Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 393 of 402
Found at i:35570479 original size:26 final size:26
Alignment explanation
Indices: 35570450--35570502 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35570440 GTTGACTTAG
*
35570450 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
35570476 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
35570502 G
1 G
35570503 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:35570961 original size:26 final size:26
Alignment explanation
Indices: 35570925--35570977 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35570915 GTTGGCTTAG
35570925 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
35570951 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35570977 G
1 G
35570978 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35571084 original size:184 final size:184
Alignment explanation
Indices: 35570775--35571136 Score: 485
Period size: 184 Copynumber: 2.0 Consensus size: 184
35570765 AGGCATACGA
* * *
35570775 AGTTCATTCCTAGTCTAAGATCGAACCAGACCAAGGGTTGTGATAGTAGGATCGACAACACGCAG
1 AGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGCGACAGTAGGATCGACAACACGCAG
* * * * *
35570840 GGGGGACTAGGCCAATCCCTGGATTACGCATTCTTCCTTTCTGACCGGCTAAGTGCCCGCACACT
66 GGGGGACTAGGCCAATCCCCGGATTACGCATTCTGCCTCTCCGACCGGCTAAGCGCCCGCACACT
*
35570905 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATGCGG
131 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGCATGCGG
** * * *
35570959 AGTTCATTCCCAGTCTAAGATC-AGACTGGACCGAGGGTTGCGACAGTAGGATCGACAGCACGTA
1 AGTTCATTCCCAGTCTAAGATCGA-ACCAGACCAAGGGTTGCGACAGTAGGATCGACAACACGCA
* * * * * * * *
35571023 GGGGGGA-TCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACG
65 GGGGGGACT-AGGCCAATCCCCGGATTACGCATTCTGCCTCTCCGACCGGCTAAGCGCCCGCACA
*
35571087 CTCTTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGC
129 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGC
35571137 CCCAGCCAGA
Statistics
Matches: 153, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
183 2 0.01
184 151 0.99
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (184 bp):
AGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGCGACAGTAGGATCGACAACACGCAG
GGGGGACTAGGCCAATCCCCGGATTACGCATTCTGCCTCTCCGACCGGCTAAGCGCCCGCACACT
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGCATGCGG
Found at i:35572754 original size:26 final size:26
Alignment explanation
Indices: 35572707--35572756 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
35572697 GACTTAGGCA
*
35572707 TACGGAGTTCATCCCCAGTCTAAGCT
1 TACGGAGTTCATCCCCAATCTAAGCT
* *
35572733 TACGGAGTTCATTCCTAATCTAAG
1 TACGGAGTTCATCCCCAATCTAAG
35572757 ATGGGACCGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAATCTAAGCT
Found at i:35573196 original size:158 final size:157
Alignment explanation
Indices: 35572733--35573231 Score: 470
Period size: 158 Copynumber: 3.2 Consensus size: 157
35572723 AGTCTAAGCT
* ** **
35572733 TACGGAGTTCATTCC-TAATCTAAGATGGGACCGAACCGAGGGTTGCAACAGTAGGATC-AGCAG
1 TACGGAGTTCATTCCAT-GTCTAAGATCCGACCG-ACCGAGGGTTGCGGCAGTAGGATCGA-CAG
* * * * * * * * *
35572796 CATGCAGGGGGGACCGGG-TCGATTCCCGACTTGCGCATTCTACCTCTCTGGTAGACAGAGCGCC
63 CACGCAAGGGGGATCGGGCT-GATCCCCGACTTGCGCATTCTGCCTCTCTGATCGGCTGAGCGCC
* * *
35572860 CGCGCGCCCGTTTCATGGTTTGGCTTAGGCA
127 CGCACGCTCGTTTCATGGGTTGGCTTAGGCA
* * * * * * * * *
35572891 TAGGGAGTTTATTGCATGTCTAAGACCCAGTCGGACCGAGGGTTGTGGCAG-CGAGATCGGCAGC
1 TACGGAGTTCATTCCATGTCTAAGATCC-GACCGACCGAGGGTTGCGGCAGTAG-GATCGACAGC
* * * * * * *
35572955 ACGCGGAGGGGGATCGGGCCGATCCCCGACTTGTGCATTATGCCTCTTTGA-CAGGCTCAGTGCC
64 ACGC-AAGGGGGATCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCTGATC-GGCTGAGCGCC
* * * *
35573019 CACACGCTCATTTCATGGGTTGACTTATGCA
127 CGCACGCTCGTTTCATGGGTTGGCTTAGGCA
* *
35573050 TACGGAGTTCATTCCCA-GTCTAAGATCTGACCAGACCGAGGGTTGCGGCAGTAGGATCGACAAC
1 TACGGAGTTCATT-CCATGTCTAAGATCCGACC-GACCGAGGGTTGCGGCAGTAGGATCGACAGC
*
35573114 ACGCAAGGGGGATCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCG
64 ACGCAAGGGGGATCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCTGATCGGCTGAGCGCCCG
* *
35573179 TACGCTCGTTTCGTGGGTTGGCTTAGGCA
129 CACGCTCGTTTCATGGGTTGGCTTAGGCA
* *
35573208 TATGAAGTTCATTCCATGTCTAAG
1 TACGGAGTTCATTCCATGTCTAAG
35573232 CATACGAAGT
Statistics
Matches: 265, Mismatches: 64, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
157 4 0.02
158 138 0.52
159 120 0.45
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
TACGGAGTTCATTCCATGTCTAAGATCCGACCGACCGAGGGTTGCGGCAGTAGGATCGACAGCAC
GCAAGGGGGATCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCTGATCGGCTGAGCGCCCGCA
CGCTCGTTTCATGGGTTGGCTTAGGCA
Found at i:35573241 original size:26 final size:26
Alignment explanation
Indices: 35573205--35573257 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35573195 GTTGGCTTAG
*
35573205 GCATATGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
35573231 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
35573257 G
1 G
35573258 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:35573931 original size:26 final size:26
Alignment explanation
Indices: 35573895--35573947 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35573885 GTTGACTTAG
35573895 GCATACGGAGTTCATCCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* *
35573921 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
35573947 G
1 G
35573948 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:35574401 original size:157 final size:158
Alignment explanation
Indices: 35573921--35574748 Score: 591
Period size: 159 Copynumber: 5.2 Consensus size: 158
35573911 CCCAGCCTAA
* * *
35573921 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGTAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCAGGATCGACA
* * *
35573986 GCACGCAG-GGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGTCTCTCCGG-CTGGCTGAGCGC
66 GCACGCAGAGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTC-GGCTGAGCGC
*
35574049 CCGCACGCCCATTTCATGGGTTGGCTTAG
130 CCGCACGCTCATTTCATGGGTTGGCTTAG
* * ** * * ** *
35574078 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCGGATCGAGGGTTGTGGTAGCGGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGATCGAGGGTTGCGACAGCAGGATC-G
* * * * * * * *
35574140 GCAGCACGTAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCAGGCCTGCTCAA
63 ACAGCACGCAGA-GGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAG
* * * * * *
35574205 TGCCCGTACACTTATTTTATGGGTTGACTTAG
127 CGCCCGCACGCTCATTTCATGGGTTGGCTTAG
* * * *
35574237 GCTTACGGAGTTCATTCCCAGTCTAAGATCGGACCTGATCGA-GGTTGCGACAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCAGGATCGACA
* * * * *
35574301 GCACGCAGAAGGGATCGGGCTGATCC-CTGGCTTGCGCATTCTGTCTCTCCGGTCGGTTGAGCGC
66 GCACGCAGAGGGGACCGGGCCGATCCTC-GGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* * *
35574365 CCGCACGCTCGTTTCGTGGGTTGGCTTAT
130 CCGCACGCTCATTTCATGGGTTGGCTTAG
* * * * *
35574394 GCATACGGAGTTCATTCCCAGTATATGATCAGATCGGA-CTGAGGGTTGC-AGCAGTAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATC-GAGGGTTGCGA-CAGCAGGATCGA
** ** * * *** *
35574457 CAATACATAGGAGGGGACCGAGCCGATCCTTGGCTTGTTAATTCTGCCTCTCCGGTCGACTGAGC
64 CAGCACGCA-GAGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
* ** ** *
35574522 ACCCTTACGCTTGTTTCGTGGGTTGGCTTAG
128 GCCCGCACGCTCATTTCATGGGTTGGCTTAG
* * ** * * *
35574553 GCATACGGAGTTCACT-CCATGTCTAA-TTCCCATTCGAATTGAGGTTGTGGTAGCAGGACCAGC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGATCGAGG--GT--T-GC--GA-CAGC
* * * * * * * *
35574616 AATGGGATCGGCAGCATGCAAAGGGGGACCGGGCTGATCTTCAGCTTGAGCATTATGCCTCTCCG
56 -A--GGATCGACAGCACGCAGA-GGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCG
* * * * * * *
35574681 ATCGGTTGAGCACCCGTACGCT-TTTTCCTGGGTTGACTTAG
117 GTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAG
*
35574722 GCATACGGAGTTCATCCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
35574749 CATATGGAGT
Statistics
Matches: 511, Mismatches: 128, Indels: 51
0.74 0.19 0.07
Matches are distributed among these distances:
156 7 0.01
157 148 0.29
158 47 0.09
159 192 0.38
160 6 0.01
161 2 0.00
163 1 0.00
164 2 0.00
167 4 0.01
168 1 0.00
169 37 0.07
170 64 0.13
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGAGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
CGCACGCTCATTTCATGGGTTGGCTTAG
Found at i:35574475 original size:316 final size:316
Alignment explanation
Indices: 35573924--35574493 Score: 744
Period size: 316 Copynumber: 1.8 Consensus size: 316
35573914 AGCCTAAGCA
* * *
35573924 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGTAGGATTGACAGCA
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAAGATCGACAGCA
*
35573989 CGCAGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGTCTCTCCGGCTGGCTGAGCGCCCGCA
66 CGCAGAGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGTCTCTCCGGCTGGCTGAGCGCCCGCA
* * *
35574054 CGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCG
131 CGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGCACCAGTCGGATCG
** * * * * * *
35574119 AGGGTTGTGGTAGCGGGACTGGCAGCACGTAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATT
196 AGGGTTGCAGCAGCAGGACTGACAACACATAGAGGGGGACCGAGCCGATCCTCGGCTTGCGCATT
35574184 ATGCCTCTCAGGCCTGCTCAATGCCCGTACACTTATTTTATGGGTTGACTTAGGCT
261 ATGCCTCTCAGGCCTGCTCAATGCCCGTACACTTATTTTATGGGTTGACTTAGGCT
* * *
35574240 TACGGAGTTCATTCCCAGTCTAAGATCGGACCTGATCGA-GGTTGCGACAGCAAGATCGATAGCA
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAAGATCGACAGCA
*
35574304 CGCAGAAGGGATCGGG-CTGATCC-CTGGCTTGCGCATTCTGTCTCTCCGG-TCGGTTGAGCGCC
66 CGCAG-AGGGATCGGGTC-GATCCTC-GGCTTGCGCATTCTGTCTCTCCGGCT-GGCTGAGCGCC
* * * * * *
35574366 CGCACGCTCGTTTCGTGGGTTGGCTTATGCATACGGAGTTCATTCCCA-GTATATG-ATCAGATC
127 CGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTATAAGCACCAG-TC
* * *
35574429 GGA-CTGAGGGTTGCAGCAGTAGGA-TCGACAATACATAG-GAGGGGACCGAGCCGATCCTTGGC
190 GGATC-GAGGGTTGCAGCAGCAGGACT-GACAACACATAGAG-GGGGACCGAGCCGATCCTCGGC
35574491 TTG
252 TTG
35574494 TTAATTCTGC
Statistics
Matches: 217, Mismatches: 28, Indels: 18
0.83 0.11 0.07
Matches are distributed among these distances:
315 35 0.16
316 179 0.82
317 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (316 bp):
TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAAGATCGACAGCA
CGCAGAGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGTCTCTCCGGCTGGCTGAGCGCCCGCA
CGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGCACCAGTCGGATCG
AGGGTTGCAGCAGCAGGACTGACAACACATAGAGGGGGACCGAGCCGATCCTCGGCTTGCGCATT
ATGCCTCTCAGGCCTGCTCAATGCCCGTACACTTATTTTATGGGTTGACTTAGGCT
Found at i:35574751 original size:26 final size:26
Alignment explanation
Indices: 35574722--35574774 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35574712 GTTGACTTAG
35574722 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
35574748 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35574774 G
1 G
35574775 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35575850 original size:158 final size:159
Alignment explanation
Indices: 35575608--35576130 Score: 380
Period size: 159 Copynumber: 3.3 Consensus size: 159
35575598 CCCGCACGCT
* *
35575608 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGG
1 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAGACCAAGGG
* * * * *
35575673 TTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGACCGGACCGATCCCC-AGCTTGCGCATTCTG
66 TTGTGGCAGCAGGACCGACAGAACACAGAGGGAGACCGGACCGATCCCCGA-CTTGCGCATTATG
* *
35575736 CTTCTTCGATCGGCTGAGCCCCCGCTCACC
130 CCTCTTCGACCGGCTGAGCCCCCGCTCACC
* * * ***
35575766 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CC-GAATTGA
1 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGACCAG-ACCAA
* * *
35575828 GGGTTGTGGCAGCGGGACCGACAGAACACAGAGGGAGACTGGGCCGATCCCCGACTTGCGCATTA
63 GGGTTGTGGCAGCAGGACCGACAGAACACAGAGGGAGACCGGACCGATCCCCGACTTGCGCATTA
* * * * *
35575893 TGCCTCTTCGACCGGCTCAACGCCTG-T-ACTTT
128 TGCCTCTTCGACCGGCTGAGCCCCCGCTCAC--C
** * * * * * * * * * *
35575925 TGTTTCATGAGTTAACTTATGCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGATCGAGGG
1 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAGACCAAGGG
** * * * * * ** * * * *
35575990 TTGCAGTAGTAGGATCAACAGCACGTAGAGGGGGACTGGGCCGATCCCC-AGCTTGCGCATTCTG
66 TTGTGGCAGCAGGACCGACAGAACACAGAGGGAGACCGGACCGATCCCCGA-CTTGCGCATTATG
* * * * * * *
35576054 CCTCTCCGACCGGTTAAGCGCCCGCACGCT
130 CCTCTTCGACCGGCTGAGCCCCCGCTCACC
** * *
35576084 TGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
1 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
35576131 CATACGGAGT
Statistics
Matches: 290, Mismatches: 61, Indels: 27
0.77 0.16 0.07
Matches are distributed among these distances:
157 6 0.02
158 78 0.27
159 200 0.69
160 5 0.02
161 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (159 bp):
CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAGACCAAGGG
TTGTGGCAGCAGGACCGACAGAACACAGAGGGAGACCGGACCGATCCCCGACTTGCGCATTATGC
CTCTTCGACCGGCTGAGCCCCCGCTCACC
Found at i:35576851 original size:26 final size:26
Alignment explanation
Indices: 35576815--35576867 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35576805 GTTGGCTTAG
35576815 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
35576841 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35576867 G
1 G
35576868 ATTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35577560 original size:730 final size:730
Alignment explanation
Indices: 35576234--35577571 Score: 2013
Period size: 729 Copynumber: 1.8 Consensus size: 730
35576224 ACCATCGTGA
* * *
35576234 GAGAGCTTAACCGGCGACATTGGGGGTTCCAACGATTAGGGGGGCCGGGGGGTGTGCGAGCATGA
1 GAGAGCCTAACCGGCGACATTAGGGGTTCC-ACGATTAGGGGGGACGGGGGGTGTGCGAGCATGA
** * * *
35576299 TGTGTGATGGGTGCTGGTAGTTGGCCCTTATTTTGACCCCCTATCCCTCATCAAACCTCGAGAAC
65 TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCCATCCCTCATCAAACCTCGAGAAC
* * * *
35576364 TCACACCCCCTTAAAGGGCATTTGAGATTTTGTAGCTTTGCTGCCAGTAGCCATTAAAGTTTCTA
130 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGCTTTGCAGCCAGTAGCCATTAAAGTGTCTA
* * * *
35576429 AAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTTGCGTTTATAGCTGAATTGT
195 AAATGGGGACACTTTTTTCAAACGATCACAAAATCTTCACCACTTCGAGTTTATAGCTGAATTGT
* * *
35576494 TTTGTACATGCCAAAAAAAATACAAGGATCTCCTCTACCAAATTTTGGCACAAAACTCTTTCTAA
260 TTTGTACAAGCCAAAAAAAATACAAGGATCTCCTCTACCAAATTTGGGCACAAAACCCTTTCTAA
* * * *
35576559 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGT
325 AAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGGGTCGT
* *
35576624 CTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCTATACAAATG
390 CTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
35576689 CCATTGGCACACCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCTGTTCGATTCCTGGCT
455 CCATTGGCACACCAAAAATATGAAGATGCGCTTGAACCCACCTACCACCTATTCGATCCCCGGCT
* * *
35576754 TGCACATCCTGCCTCTCTGGTTGGCTGAGCGCCCACAAGCTCGTTTCGTGGGTTGGCTTAGGCAT
520 TGCACATCCTGCCTCTCTGGTTGGCTGAGCGCCCACAAGCTCATTTCATGGGTTGACTTAGGCAT
35576819 ACGGAGTTCATTCC-ATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTTTAAGCCATGGT
585 ACGGAGTTCATTCCTA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTTTAAGCCATGGT
35576883 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTGCCCGGGCACCATCGCCGGAGC
649 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTGCCCGGGCACCATCGCCGGAGC
35576948 ATTGCCAAAGCATCGTC
714 ATTGCCAAAGCATCGTC
* * *
35576965 GAGAGCCTAACCGGCGGCATTAGGGGTT-C-CGATTATTGGGGGATGGGGGGTGTGCGCA-CATG
1 GAGAGCCTAACCGGCGACATTAGGGGTTCCACGATTA-GGGGGGACGGGGGGTGTGCG-AGCATG
* *
35577027 ATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAATCCTCGAGAA
64 ATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCCATCCCTCATCAAACCTCGAGAA
*
35577092 CTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCAGCCAGTAGCCATTAAAGTGTCT
129 CTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGCTTTGCAGCCAGTAGCCATTAAAGTGTCT
* * * * *
35577157 GAAATGGTGACACTTTTTTCAAACGATCACAAAATCTTCACCACTTCGATTTTTTAGCTGAATTT
194 AAAATGGGGACACTTTTTTCAAACGATCACAAAATCTTCACCACTTCGAGTTTATAGCTGAATTG
* * *
35577222 TTTTGTGCAAGCCAGAAAAAATACAAGGAT-TACCTCTACCAAATTTGGGGACAAAACCCTTTCT
259 TTTTGTACAAGCCAAAAAAAATACAAGGATCT-CCTCTACCAAATTTGGGCACAAAACCCTTTCT
*
35577286 AAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGGGT
323 -AAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGGGT
* *
35577351 CGTCTTGCCACGAAACTTCACATGAAGGCTTGGGGGACCATTGTATGAATTTACAGGCCATAAAA
387 CGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAA
* *** *
35577416 ATGGCATTGGCATGGCAAAAATATGAAGATGCGCTTGAACCCACCTACCACTTATTCGATCCCCG
452 ATGCCATTGGCACACCAAAAATATGAAGATGCGCTTGAACCCACCTACCACCTATTCGATCCCCG
* * ** * *
35577481 GCTTGCGCATCCTGCCTCTTTGG-TGGACTGAGCGCCTGCATGCTCATTTTATGGGTTGACTTAG
517 GCTTGCACATCCTGCCTCTCTGGTTGG-CTGAGCGCCCACAAGCTCATTTCATGGGTTGACTTAG
*
35577545 GCATATGGAGTTCATTCCTAGTCTAAG
581 GCATACGGAGTTCATTCCTAGTCTAAG
35577572 ATAAGATAGG
Statistics
Matches: 539, Mismatches: 62, Indels: 13
0.88 0.10 0.02
Matches are distributed among these distances:
728 7 0.01
729 254 0.47
730 252 0.47
731 26 0.05
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (730 bp):
GAGAGCCTAACCGGCGACATTAGGGGTTCCACGATTAGGGGGGACGGGGGGTGTGCGAGCATGAT
GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCCATCCCTCATCAAACCTCGAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTATAGCTTTGCAGCCAGTAGCCATTAAAGTGTCTAA
AATGGGGACACTTTTTTCAAACGATCACAAAATCTTCACCACTTCGAGTTTATAGCTGAATTGTT
TTGTACAAGCCAAAAAAAATACAAGGATCTCCTCTACCAAATTTGGGCACAAAACCCTTTCTAAA
AAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGGGTCGTC
TTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGC
CATTGGCACACCAAAAATATGAAGATGCGCTTGAACCCACCTACCACCTATTCGATCCCCGGCTT
GCACATCCTGCCTCTCTGGTTGGCTGAGCGCCCACAAGCTCATTTCATGGGTTGACTTAGGCATA
CGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTTTAAGCCATGGTGC
ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTGCCCGGGCACCATCGCCGGAGCAT
TGCCAAAGCATCGTC
Found at i:35578090 original size:26 final size:26
Alignment explanation
Indices: 35578060--35578109 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
35578050 GACTTAGGCA
35578060 TACAGAGTTCATCCCCAGTCTAAGCG
1 TACAGAGTTCATCCCCAGTCTAAGCG
*
35578086 TACAGAGTTCATTCCCAGTCTAAG
1 TACAGAGTTCATCCCCAGTCTAAG
35578110 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (26 bp):
TACAGAGTTCATCCCCAGTCTAAGCG
Found at i:35578561 original size:26 final size:26
Alignment explanation
Indices: 35578511--35578561 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
35578501 TGGCATAGGG
* *
35578511 ATACGGAGTTCATTCCATGTGTAAGC
1 ATACGAAGTTCATTCCATGTCTAAGC
35578537 ATACGAAGTTCATTCCCA-GTCTAAG
1 ATACGAAGTTCATT-CCATGTCTAAG
35578562 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCATGTCTAAGC
Found at i:35579546 original size:25 final size:26
Alignment explanation
Indices: 35579512--35579563 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
35579502 GTTGACTTAG
35579512 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35579537 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35579563 G
1 G
35579564 ATCAAATTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35581162 original size:26 final size:26
Alignment explanation
Indices: 35581125--35581177 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35581115 GTTGACTTAG
35581125 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
35581151 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
35581177 G
1 G
35581178 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:35581442 original size:159 final size:159
Alignment explanation
Indices: 35581151--35581652 Score: 550
Period size: 159 Copynumber: 3.2 Consensus size: 159
35581141 CCCAGTCTAA
35581151 GCATACGGAGTTCATTCC-TAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * *
35581215 AAGCATGCA-AGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCTGGCTGAGC
65 -AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* *
35581279 GCCCGTACGCTCGTTTCGTGGGTTGGCATAG
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * *
35581310 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * * * * *
35581374 AGCACGCAGAAGGGGCCCGGGCCGATCCTCGGCTTGTGCATTATGCCTCTCCGATCGGTTCAGTG
65 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * **
35581439 CCCGCACGCTCATTTCATGGGTTAACTTAG
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * *
35581469 GCATACAGAGTTCATTCCCA-GTCTAAGATTGGACCAGATCGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGC
* ** * *
35581533 AGAACATAG-GGGGGACGGGGCCGATCCCCGGCTTGCGCATTCTG-CTCTGC-AGCCGGCTGAGC
65 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CCGGCTGAGC
35581595 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
35581626 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
35581653 CATGCAGAGT
Statistics
Matches: 276, Mismatches: 60, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
156 4 0.01
157 60 0.22
158 37 0.13
159 168 0.61
160 7 0.03
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.22
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
GCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:35583162 original size:26 final size:26
Alignment explanation
Indices: 35583112--35583164 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35583102 GTTGGCTTAG
* *
35583112 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
35583138 GCATACGAAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
35583164 G
1 G
35583165 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:35583505 original size:27 final size:26
Alignment explanation
Indices: 35583475--35583529 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
35583465 CATGAGTTGA
35583475 CTTAGGCATACAGAGTTCATCCCCAGT
1 CTTA-GCATACAGAGTTCATCCCCAGT
** * *
35583502 CTTAGCATATGGAGTTCATTCCTAGT
1 CTTAGCATACAGAGTTCATCCCCAGT
35583528 CT
1 CT
35583530 AAGATCGGAC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (26 bp):
CTTAGCATACAGAGTTCATCCCCAGT
Found at i:35583874 original size:158 final size:158
Alignment explanation
Indices: 35583709--35584010 Score: 396
Period size: 158 Copynumber: 1.9 Consensus size: 158
35583699 GAACCAAGGT
*
35583709 TTGTGGCAAC-AGAACCGATAGCACGTAGTGAGGGAAC-GGGTCGATCCTCAG-C-TACGCATTA
1 TTGTGGCAACAAG-ACCGACAGCACGTAG-G-GGGAACTGGGTCGATCC-CAGACTTACGCATTA
* ** * *
35583770 AACCTCTTCGGTTGGCTTAGCACCCGCACGCTCGTTTCATGGGTTGACTTATGCATACTGAGTTC
62 AACCTCTCCGACTGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTC
35583835 ATTCCCAGTCTAAGATCGAACAAGACCGAGGG
127 ATTCCCAGTCTAAGATCGAACAAGACCGAGGG
* * * * * ***
35583867 TTGTGGCAGCAAGATCGACAGCACGTAGGGGGGACTGGGTCGATCCCCGACTTATGCATTCTGCC
1 TTGTGGCAACAAGACCGACAGCACGTAGGGGGAACTGGGTCGATCCCAGACTTACGCATTAAACC
* *
35583932 TCTCCGACTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTGATTC
66 TCTCCGACTGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTC
35583997 CCAGTCTAAGATCG
131 CCAGTCTAAGATCG
35584011 GATTGGACCG
Statistics
Matches: 124, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
156 7 0.06
157 12 0.10
158 103 0.83
159 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (158 bp):
TTGTGGCAACAAGACCGACAGCACGTAGGGGGAACTGGGTCGATCCCAGACTTACGCATTAAACC
TCTCCGACTGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTC
CCAGTCTAAGATCGAACAAGACCGAGGG
Found at i:35584020 original size:158 final size:157
Alignment explanation
Indices: 35583782--35584163 Score: 457
Period size: 157 Copynumber: 2.4 Consensus size: 157
35583772 CCTCTTCGGT
* *
35583782 TGGCTTAGCACCCGCACGCTCGTTTCATGGGTTGACTTATGCATACTGAGTTCATTCCCAGTCTA
1 TGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTA
* * * * * *
35583847 AGATCGAACAAGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGTAGGGGGGA-CTGGGTCGAT
66 AGATCGAACAAGACCGA-AGTTGTGACAACAAGATAGACAGCACGCAGGGGGGATC-AGGTCGAT
*
35583911 CCCCGACTTATGCATTCTGCCTCTCCGAC
129 CCCCGACATATGCATTCTGCCTCTCCGAC
* *
35583940 TGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTGATTCCCAGTCTA
1 TGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTA
* *** * * *
35584005 AGATCGGATTGGACCGAAGTTGTGACAACAGGATAGATAGCACGCAGGGGGGATCAGGTCGGTCC
66 AGATCGAACAAGACCGAAGTTGTGACAACAAGATAGACAGCACGCAGGGGGGATCAGGTCGATCC
* *
35584070 CCGGCATGTGCATTCTGCCTCTCCGAC
131 CCGACATATGCATTCTGCCTCTCCGAC
** * * * *
35584097 CAGTTGAGC-CCTTGCACAG-TCGTTTCATGGGTTGTCTTAGGCATACGGAGTTCATT-CCATGT
1 TGGCTGAGCACC-CGCAC-GCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GT
35584159 CTAAG
63 CTAAG
35584164 CATACAAAGT
Statistics
Matches: 192, Mismatches: 28, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
156 5 0.03
157 111 0.58
158 76 0.40
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (157 bp):
TGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTA
AGATCGAACAAGACCGAAGTTGTGACAACAAGATAGACAGCACGCAGGGGGGATCAGGTCGATCC
CCGACATATGCATTCTGCCTCTCCGAC
Found at i:35584929 original size:26 final size:26
Alignment explanation
Indices: 35584893--35584964 Score: 99
Period size: 26 Copynumber: 2.8 Consensus size: 26
35584883 TAGGCAAACT
*
35584893 GAGTTCATCCCCAGTCTAAGCATATG
1 GAGTTCATCCCCAGTCTAAGCATACG
* *
35584919 GAGTTCATCCCTAGTCTAGGCATACG
1 GAGTTCATCCCCAGTCTAAGCATACG
* *
35584945 GAGTTCATTCCCAGTGTAAG
1 GAGTTCATCCCCAGTCTAAG
35584965 ATCAAATCGG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (26 bp):
GAGTTCATCCCCAGTCTAAGCATACG
Found at i:35586639 original size:158 final size:157
Alignment explanation
Indices: 35586167--35586651 Score: 483
Period size: 158 Copynumber: 3.1 Consensus size: 157
35586157 AAGAGGACGA
* * * * * **
35586167 AGTTCATTCCCAGTCTAAGACAAGACCAAACCGAAGGTTGCGATAGCAGGATTGGTAGCACGCAG
1 AGTTCATTCCCAGTCTAACAC-AGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAG
* * * * * *
35586232 GGGGGACTGGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGGGCGACTGAGCGCCCGCACAC-
65 GGGGGACCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCT
*
35586296 CTGTTTCGTGGGTTGGCTTAGGCATAGGG
130 C-GTTTCGTGGGTTGGCTTAGGCATACGG
* * * * *
35586325 AGTTCATT-CCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGCA-GAACTGACAGCACG
1 AGTTCATTCCCA-GTCTAA--CACAGACCAGACCGAGGGTTGCGACAGCAGGATC-GACAGCACG
* * * * * * * *
35586387 CAGAGGGGGACCGAGCCGATCCCTAGCTTGTGCATTATGCCTCTTCGGCCTGCTCAGTGCCCGGA
62 CAG-GGGGGACCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCA
* *
35586452 CGCTCGTTTCGTGGGTTGACTTATGCATACGG
126 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * * *
35586484 AGTTCATTCCCAGTCTAACATCGGACCAGATCGAGGGTTGCAACAGCAGGATCGACAGCACGTAG
1 AGTTCATTCCCAGTCTAACA-CAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAG
** ** * ** * *
35586549 GGGGGACCGGGCCGATCATTGGCTTACGCATTCTGCTTCTCCGATCGGCTGAGCACCCGTACGCT
65 GGGGGACCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCT
35586614 CGTTTCGTGGGTTGGCTTAGGCATACGG
130 CGTTTCGTGGGTTGGCTTAGGCATACGG
*
35586642 AGTTTATTCC
1 AGTTCATTCC
35586652 ATGACTAAGC
Statistics
Matches: 260, Mismatches: 57, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
157 6 0.02
158 127 0.49
159 119 0.46
160 8 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
AGTTCATTCCCAGTCTAACACAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGG
GGGGACCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGGCTTAGGCATACGG
Found at i:35587198 original size:354 final size:355
Alignment explanation
Indices: 35586538--35587370 Score: 933
Period size: 354 Copynumber: 2.3 Consensus size: 355
35586528 AGCAGGATCG
*** * *
35586538 ACAGCACGTAG-GGGGGACCGGGCCGATCATTGGCTTACGCATTCTGCTTCTCCGATCGGCTGAG
1 ACAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAG
* * * * * * * *
35586602 CACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGACTAAGCATACG
66 CGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCA-GTCTAAGCATACG
* **
35586667 GAGTTCATTCCCAGTCTAAGATTGGACCGAAGTGAGGGTTACGGTGGCAGGACCAGCAGCAGGAT
130 GAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTT---GTGGCAGGA-CA-CAGCAGGAT
* * *
35586732 CGGTAGCACGCAGGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCAGGCTGGCTG
190 CGGTAGCACCCAGGGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCAGGCTGGCTG
* * *
35586797 AGTGCTCGTACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCC
255 AGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCC
35586862 AGCCAGACCGAGGGATGTGGCAGCAGGACCGGCAGC
320 AGCCAGACCGAGGGATGTGGCAGCAGGACCGGCAGC
* * * *
35586898 GAGATCAGTAGCACGTAGAGGGGGACCAGGCTGATCCCCGGCTTATGCATTATGCCTCTCCGGTC
1 ---A-C---AGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTC
* * *
35586963 GGTTGAGCGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCAGTCTAAG
59 GGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAG
* *
35587028 CATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG-T-T-GC-GG-CA-A-CAGGA
124 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCAGGACACAGCAGGA
* * * * *
35587086 TCGGTAGCACCCA-GGGGGGACCGAGCCGATCCCTGGCTTACGCATTTTGCCTTTCCGG-TCGGC
189 TCGGTAGCACCCAGGGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCAGGCT-GGC
* * * **
35587149 TGAGCGCCCGCACGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
253 TGAGCGCCCGCACACTC-ATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
** * * *
35587213 CCCAGTTAGACCGAGGGTTGTGGTAGCGGGACCGGCAGC
317 CCCAGCCAGACCGAGGGATGTGGCAGCAGGACCGGCAGC
* * * *
35587252 ACA-CA---A-AGAGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTCAG
1 ACAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAG
* * *
35587312 CGCCCGCACGCTCATTTCATGGGTTGACTTATGCATTCGGAGTTCATTCCCAATCTAAG
66 CGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCAGTCTAAG
35587371 AGCAGACCAA
Statistics
Matches: 402, Mismatches: 60, Indels: 36
0.81 0.12 0.07
Matches are distributed among these distances:
342 87 0.22
343 12 0.03
346 2 0.00
347 1 0.00
350 1 0.00
351 1 0.00
353 2 0.00
354 129 0.32
355 17 0.04
356 1 0.00
358 2 0.00
360 2 0.00
361 2 0.00
362 1 0.00
363 1 0.00
364 1 0.00
366 1 0.00
367 54 0.13
368 85 0.21
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (355 bp):
ACAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAG
CGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACGG
AGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCAGGACACAGCAGGATCGGTAG
CACCCAGGGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCAGGCTGGCTGAGCGCC
CGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAG
ACCGAGGGATGTGGCAGCAGGACCGGCAGC
Found at i:35587315 original size:159 final size:158
Alignment explanation
Indices: 35587027--35587531 Score: 482
Period size: 159 Copynumber: 3.2 Consensus size: 158
35587017 CCCAGTCTAA
* * * ** * * * *
35587027 GCATATGGAGTTCATTCCCA-GTCTAAG-ATCGGACCGGACCGAGGGTTGCGGCAACAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAAACCGAGGGTTGTGGCAGCAGGACCGA
* * * * * * *
35587090 TAGCACCCAGGGGGGACCGAGCCGATCCCTGGCTTACGCATTTTGCCT-TTCCGGTCGGCTGAGC
65 CAGCACACAAGAGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTT-CGGTCGGCTGAGC
*
35587154 GCCCGCACGCCTGTTTCGTGGGTTGGCTTAG
129 GCCCGCACG-CTGTTTCATGGGTTGGCTTAG
* * ** * * * *
35587185 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TTAGACCGAGGGTTGTGGTAGCGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCGAGGGTTGTGGCAGCAGGACCGAC
* *
35587249 AGCACACAAAGAGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTCAGCG
66 AGCACAC-AAGAGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCG
* * *
35587314 CCCGCACGCTCATTTCATGGGTTGACTTAT
130 CCCGCACGCT-GTTTCATGGGTTGGCTTAG
* * * *
35587344 GCATTCGGAGTTCATTCCCA-ATCTAAG-AGCAGACCAAACCGAGGGTTGTGGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAAACCGAGGGTTGTGGCAGCAGGACCGA
** * * * * * * **
35587407 CAGCATGCAGGGGGTGATCGGGTCGATCCTTGGCTTGCGCATTCTGCCTCTCCGGTCAACTGAGC
65 CAGCACACAAGAGG-GACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGC
* *
35587472 GCCTGCACGTTTGTTTCATGGGTTGGCTTAG
129 GCCCGCACG-CTGTTTCATGGGTTGGCTTAG
35587503 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
35587532 TACGGACTTC
Statistics
Matches: 280, Mismatches: 56, Indels: 20
0.79 0.16 0.06
Matches are distributed among these distances:
157 3 0.01
158 62 0.22
159 208 0.74
160 7 0.03
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCGAGGGTTGTGGCAGCAGGACCGAC
AGCACACAAGAGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGC
CCGCACGCTGTTTCATGGGTTGGCTTAG
Found at i:35587533 original size:26 final size:26
Alignment explanation
Indices: 35587503--35587555 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35587493 GTTGGCTTAG
*
35587503 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGACTTCATTCCCA-GTCTAA
35587529 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
35587555 G
1 G
35587556 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:35588362 original size:26 final size:26
Alignment explanation
Indices: 35588333--35588385 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35588323 GTTGGCTTAG
*
35588333 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCAT-TCTAA
35588359 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCATTCTAA
35588385 G
1 G
35588386 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCATTCTAA
Found at i:35588559 original size:26 final size:26
Alignment explanation
Indices: 35588530--35588582 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35588520 GTTGGCTTAG
*
35588530 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
35588556 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
35588582 G
1 G
35588583 ATTTTGAGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:35589640 original size:26 final size:26
Alignment explanation
Indices: 35589604--35589656 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35589594 GTTGACTTAG
*
35589604 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
35589630 GCATATGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
35589656 G
1 G
35589657 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:35589775 original size:185 final size:185
Alignment explanation
Indices: 35589478--35589816 Score: 475
Period size: 185 Copynumber: 1.8 Consensus size: 185
35589468 TAAGCCCCAG
** * * * *
35589478 TCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGACCGGGTCGATCCTCGGCT
1 TCGGACCGAGGGTTACGACAGCAGGACCGACAGCACGTAAAGGGGGACCGGGCCGATCCCCGGCT
*
35589543 TACGCATTATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
66 TACGCATTATGCCTCTCCGATCGACTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
35589608 ACGAAGTTCATCCCCA-GTCTAAGCATATGAAGTTCATTCCCAATCTAAGATCAGA
131 ACGAAGTTCAT-CCCATGTCTAAGCATATGAAGTTCATTCCCAATCTAAGATCAGA
* **
35589663 TCGGACCGAGGGTTACGACAGCAGGATCGACAGCACGTAAAGGGGGATTGGGCCGATCCCCGGCT
1 TCGGACCGAGGGTTACGACAGCAGGACCGACAGCACGTAAAGGGGGACCGGGCCGATCCCCGGCT
** * * * *
35589728 TGTGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCATGAC-CGTTTCGTGGGTTGGCTTAGGCA
66 TACGCATTATGCCTCTCCGATCGACTCAGCGCCCGCACG-CTCGTTTCGTGGGTTGACTTAGGCA
* * *
35589792 TAGGGAGTTCATTCCATGTCTAAGC
130 TACGAAGTTCATCCCATGTCTAAGC
35589817 CCCAGTGGGA
Statistics
Matches: 133, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
184 3 0.02
185 129 0.97
186 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (185 bp):
TCGGACCGAGGGTTACGACAGCAGGACCGACAGCACGTAAAGGGGGACCGGGCCGATCCCCGGCT
TACGCATTATGCCTCTCCGATCGACTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
ACGAAGTTCATCCCATGTCTAAGCATATGAAGTTCATTCCCAATCTAAGATCAGA
Found at i:35589813 original size:344 final size:342
Alignment explanation
Indices: 35589186--35591657 Score: 1781
Period size: 344 Copynumber: 7.3 Consensus size: 342
35589176 TACCACCCGT
* * ** * * *
35589186 TCGATCCCCGGCTTACGCATCCTGCCTCT-CTAGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
1 TCGATCCTCGACTTACGCATTATGCCTCTCCGA-TCGGCTCAGCGCCCGCACGCTCGTTTCATGG
* * * * * *
35589250 GTTGACATAGGCATACGGACTTCATCCCCAGTCTAAGCATACAGAGTTCATT-CTAGTCTAAGAT
65 GTTGACTTAGGCATACGAAGTTCAT-CCCAGTCTAAGCATAGA-AGTTCATTCCCAATCTAAGAT
* * * * * ** * * * * * *
35589314 CAAACCAGATCAAGGGTTGTGGCAGTGGGACCGGCAGCAACGCAGAA-GTGGACCAGGCCGATCC
128 CAGATCGGACCAAGGGTTGCGGCAGCAGGATCGACAGC-ACGTA-AAGGGGGATCGGGCCGATCC
* * * * * ** * * ** * *
35589378 TCGACTTGTGCATTGTGCCTCTTC-AGCCGGGTTAGTGCCTACACGCCCGTTTTGTGGGATGGCT
191 CCGGCTTGCGCATTCTGCCTCTTCGA-TCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCT
*
35589442 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCG
255 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCG
*
35589507 ACAGCACGTAGAGGGGGACCGGG
320 ACAGCACGCAGAGGGGGACCGGG
* *
35589530 TCGATCCTCGGCTTACGCATTATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCGTGGG
1 TCGATCCTCGACTTACGCATTATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCATGGG
35589595 TTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATGAAGTTCATTCCCAATCTAAGATC
66 TTGACTTAGGCATACGAAGTTCAT-CCCAGTCTAAGCATA-GAAGTTCATTCCCAATCTAAGATC
* * * *
35589660 AGATCGGACCGAGGGTTACGACAGCAGGATCGACAGCACGTAAAGGGGGATTGGGCCGATCCCCG
129 AGATCGGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGTAAAGGGGGATCGGGCCGATCCCCG
* * * *
35589725 GCTTGTGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCATGACCGTTTCGTGGGTTGGCTTAGG
194 GCTTGCGCATTCTGCCTCTTCGATCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGG
* *
35589790 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGTGGGACTGAGGGTTGTGGCAGCGGGACC-AGCA
259 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGA-CA
* * *
35589854 GCATGCAGAAGGGGACCGGT
323 GCACGCAGAGGGGGACCGGG
* * * ** * * *
35589874 TCGATCCTCGACCTATGCATTATGCCCCTCCGGCCTGCTCAGCACCCGCACGCTCGTTTCGTGGG
1 TCGATCCTCGACTTACGCATTATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCATGGG
* *
35589939 TTGACTTAGGCATACGAAGTTCATCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTA
66 TTGACTTAGGCATACGAAGTTCATCCCAGTCTAAGCATA-GAAGTTCATTCCCAATCTAAGATCA
* * * * * * * ** *
35590004 GATCGGATCAAGGGTTGCGGCAACAAGATCAATAGTATGT-GGGGGGGATCGGGCTGATCCCCGG
130 GATCGGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGTAAAGGGGGATCGGGCCGATCCCCGG
* * * * * *
35590068 CTTGCGCATTCTGCCTCTCCGATC-AGCTGAGTGCTCGTACGCCCTTTTCGTGGGTTGGCTGAGG
195 CTTGCGCATTCTGCCTCTTCGATCGA-CTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGG
* *
35590132 CATAGGGAGTTCATTCCATGTCTCAGCCCC-GTCGGACCGAGGGTTGTGGCAGCGGGACC-AGTA
259 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGA-CA
*
35590195 GCACGCAAAGGGGGACCGGG
323 GCACGCAGAGGGGGACCGGG
* * * * * * * * * *
35590215 CCGATCCCCGATTTACGCATTATGCCTCTTCGGTCGGGTTAGCAG-TCGTACGCCCGTTTCATGG
1 TCGATCCTCGACTTACGCATTATGCCTCTCCGATCGGCTCAGC-GCCCGCACGCTCGTTTCATGG
* * * * *
35590279 GTTG-GTTAGGCATAGGGAGTTCATTCCA-TGT---C-T--AAG------CCC---C--AG-T--
65 GTTGACTTAGGCATACGAAGTTCATCCCAGTCTAAGCATAGAAGTTCATTCCCAATCTAAGATCA
* * * * * * * ** *
35590322 G---GGACCGAGGGTTGTGGCAGCGGGA-CCAGCAGCATGCAGAA-GGGGACCGGTTCGATCCTC
130 GATCGGACCAAGGGTTGCGGCAGCAGGATCGA-CAGCACGTA-AAGGGGGATCGGGCCGATCCCC
* ** * * * * * * * *
35590382 GACTTATGCATTATGCCCCTCCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
193 GGCTTGCGCATTCTGCCTCTTCGATCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
* * * *
35590447 GCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGAT
258 GCATAGGGAGTTCAT-TCCA---T--G--T-CTAAG--C---CCCAGTC---G----GA-C----
* * * ** * * *
35590512 CGAGCGTTGCGGCAACAAGATCGACAGCATGTAG-GGGGGACCGGG
297 CGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGG
* * * * * * * *
35590557 CCGATCCTCGGCTTACGCATTCTGCCTCTCCGATCAGCTGAGCGCTCGTACGC-CTTTTTCATGG
1 TCGATCCTCGACTTACGCATTATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTC-GTTTCATGG
* * * * *
35590621 GTTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGC---------C---CCC-A-C------C
65 GTTGACTTAGGCATACGAAGTTCATCCCA-GTCTAAGCATAGAAGTTCATTCCCAATCTAAGATC
* * * * * * * *
35590666 --A---GACCAAGGGTTGTGGTAGCGGGA-CTGGCAGCACGCAAAGGGGGACCAGGTCGATCCCC
129 AGATCGGACCAAGGGTTGCGGCAGCAGGATC-GACAGCACGTAAAGGGGGATCGGGCCGATCCCC
* * * * * * * * * *
35590725 GGTTTACGCATTATGCCTTTTTGGTC-AGGTTAGCGGCCGCACGCCCATTTCGTGGGTTGGCTTA
193 GGCTTGCGCATTCTGCCTCTTCGATCGA-CTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTA
* * *
35590789 GGCATAGGGAGTTCATTTCGTGTCTAAGCCCCAG-CGGGACCGAGGGTTGTGGCAGCGGGATCGA
257 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACCGAGGGTTGTGGCAGCGGGACCGA
*
35590853 CAGCACGCAGAGAGGGACCGGG
321 CAGCACGCAGAGGGGGACCGGG
* * * * *
35590875 TCGATCCTTGACTTACGGATTATGCCTCTCC-AGTCGGCTCAGCGCCCGTACGCTCATTTTATGG
1 TCGATCCTCGACTTACGCATTATGCCTCTCCGA-TCGGCTCAGCGCCCGCACGCTCGTTTCATGG
* *
35590939 GTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGTATACAGAGTTCATTCCCAATCTAAGAT
65 GTTGACTTAGGCATACGAAGTTCAT-CCCAGTCTAAGCATAGA-AGTTCATTCCCAATCTAAGAT
* * * ** * * * *
35591004 CAGATCAGACC----G-AG-GGCAGTAAAAGCGACAACACGT-AGGGGGGATCGGGTCGATCCCC
128 CAGATCGGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGTAAAGGGGGATCGGGCCGATCCCC
* * * *
35591062 GGCTTGTGCATTCTGCCTCTTCTATCGGCTGAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAG
193 GGCTTGCGCATTCTGCCTCTTCGATCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
* * * * *
35591127 GCATAGGGAATTCATTCCATGGCTAAGCTCCAGTCGGACCGAAGGTTGTGGCAGCGGGACCCAAC
258 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGA-CCGAC
* * *
35591192 AGCACGTAGAAGGGGACCGGT
322 AGCACGCAGAGGGGGACCGGG
* * *
35591213 TCGATCCTCGACTTACGCATTATGCCTCTCCGACCGGCTCATCACCCGCACGCTCGTTTCATGGG
1 TCGATCCTCGACTTACGCATTATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCATGGG
* *
35591278 TTGACTTAGGCATACGAAGTTCATCCCTAGTCTAAGCATACGAAGTCCATTCCCAATCTAAGATT
66 TTGACTTAGGCATACGAAGTTCATCCC-AGTCTAAGCATA-GAAGTTCATTCCCAATCTAAGATC
* * * * * * * *
35591343 GGATCGGATCGAA-GGTTGCGGTAACAAGATCGACAGGATGTAAGGGGGGATCGGGCCGATCCCC
129 AGATCGGA-CCAAGGGTTGCGGCAGCAGGATCGACAGCACGTAAAGGGGGATCGGGCCGATCCCC
* * * * * * *
35591407 GGCTTGCGCATTCTACCTCTCCGATC-AGCTGAGCACCCGTACGCCCTTTTCTTGGGTTGGCTGA
193 GGCTTGCGCATTCTGCCTCTTCGATCGA-CTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTA
* * * *
35591471 GGCATAGGGAGTTCATTCCATGTCGAAGCCCCCGCCGGACCGAGGGTTGTGGCAGCTGGACCTG-
257 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACC-GA
*
35591535 CAACACGCAG-GGGGGACCGGG
321 CAGCACGCAGAGGGGGACCGGG
* ** * * * * * *
35591556 TCGATCCCCTTCTTGCGCATTCTGTCTCTCCGGTCGGCTGAGCGCCCGCACGCCCGTTTCATGGG
1 TCGATCCTCGACTTACGCATTATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCATGGG
* * * *
35591621 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
66 TTGACTTAGGCATACGAAGTTCATCCCA-GTCTAAGC
35591658 CCCAACCGGA
Statistics
Matches: 1698, Mismatches: 328, Indels: 205
0.76 0.15 0.09
Matches are distributed among these distances:
314 2 0.00
315 23 0.01
316 76 0.04
317 31 0.02
318 89 0.05
319 4 0.00
320 2 0.00
321 3 0.00
322 3 0.00
323 1 0.00
324 1 0.00
325 3 0.00
326 4 0.00
327 1 0.00
328 2 0.00
329 5 0.00
330 3 0.00
331 6 0.00
332 5 0.00
333 1 0.00
334 5 0.00
335 2 0.00
336 1 0.00
337 124 0.07
338 151 0.09
339 10 0.01
340 21 0.01
341 101 0.06
342 173 0.10
343 316 0.19
344 355 0.21
345 172 0.10
346 1 0.00
348 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (342 bp):
TCGATCCTCGACTTACGCATTATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCATGGG
TTGACTTAGGCATACGAAGTTCATCCCAGTCTAAGCATAGAAGTTCATTCCCAATCTAAGATCAG
ATCGGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGTAAAGGGGGATCGGGCCGATCCCCGGC
TTGCGCATTCTGCCTCTTCGATCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCA
TAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCA
CGCAGAGGGGGACCGGG
Found at i:35589982 original size:25 final size:26
Alignment explanation
Indices: 35589948--35589999 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
35589938 GTTGACTTAG
35589948 GCATACGAAGTTCA-TCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
35589973 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
35589999 G
1 G
35590000 ATTAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:35590268 original size:158 final size:158
Alignment explanation
Indices: 35590046--35590963 Score: 632
Period size: 159 Copynumber: 5.6 Consensus size: 158
35590036 TAGTATGTGG
* * * * * * *
35590046 GGGGGATCGGG-CTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCAGCTGAGTGCTCGTACGC
1 GGGGGACCGGGTC-GATCCTCGACTTACGCATTATGCCTCTCCGATCAGCTTAGCGCTCGTACGC
* * *
35590110 CCTTTTCGTGGGTTGGCTGAGGCATAGGGAGTTCATTCCATGTCTCAGCCCCGTCGGACCGAGGG
65 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCGTCGGACCGAGGG
*
35590175 TTGTGGCAGCGGGACCAGTAGCACGCAAA
130 TTGTGGCAGCGGGACCAGCAGCACGCAAA
* * * * * * *
35590204 GGGGGACCGGGCCGATCCCCGATTTACGCATTATGCCTCTTCGGTCGGGTTAGCAG-TCGTACGC
1 GGGGGACCGGGTCGATCCTCGACTTACGCATTATGCCTCTCCGATCAGCTTAGC-GCTCGTACGC
* *
35590268 CCGTTTCATGGGTTGG-TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTGGGACCGAGG
65 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC-GTCGGACCGAGG
*
35590332 GTTGTGGCAGCGGGACCAGCAGCATGCAGAA
129 GTTGTGGCAGCGGGACCAGCAGCACGCA-AA
* * * * * * * * *
35590363 -GGGGACCGGTTCGATCCTCGACTTATGCATTATGCCCCTCCGACCGGCTCAGCGCCCGCACGCT
1 GGGGGACCGGGTCGATCCTCGACTTACGCATTATGCCTCTCCGATCAGCTTAGCGCTCGTACGCC
* * * * ** ***
35590427 CGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCA-GTCTAAGCATACGAAGTTCATTCC
66 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC---C-CCG-TC-GGAC
* * * * * *
35590491 CAGTCTAAGATCAGATCGGATCGAGCGTTG-CGGCAACAAGATCGACAGCATGTAG
124 C-G---AGGGT-TG-T-GG--C-AGCG-GGAC--CAGC-AG--C-AC-GCA---AA
* * * *
35590546 GGGGGACCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGATCAGCTGAGCGCTCGTACGCC
1 GGGGGACCGGGTCGATCCTCGACTTACGCATTATGCCTCTCCGATCAGCTTAGCGCTCGTACGCC
** * * ** * *
35590611 TTTTTCATGGGTTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCCACCAGACCAAGGG
66 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCCGTCGGACCGAGGG
* **
35590676 TTGTGGTAGCGGGACTGGCAGCACGCAAA
130 TTGTGGCAGCGGGACCAGCAGCACGCAAA
* * ** * ** * * *
35590705 GGGGGACCAGGTCGATCCCCGGTTTACGCATTATGCCTTTTTGGTCAGGTTAGCGGC-CGCACGC
1 GGGGGACCGGGTCGATCCTCGACTTACGCATTATGCCTCTCCGATCAGCTTAGC-GCTCGTACGC
* * *
35590769 CCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCGTGTCTAAGCCCCAG-CGGGACCGAG
65 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC-GTC-GGACCGAG
* *
35590833 GGTTGTGGCAGCGGGATC-GACAGCACGCAGA
128 GGTTGTGGCAGCGGGACCAG-CAGCACGCAAA
* * * * * *
35590864 GAGGGACCGGGTCGATCCTTGACTTACGGATTATGCCTCTCC-AGTCGGCTCAGCGCCCGTACGC
1 GGGGGACCGGGTCGATCCTCGACTTACGCATTATGCCTCTCCGA-TCAGCTTAGCGCTCGTACGC
* * ** * * *
35590928 TCATTTTATGGGTTGACTTAGGCATACGAAGTTCAT
65 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
35590964 CCCCAGTCTA
Statistics
Matches: 583, Mismatches: 134, Indels: 85
0.73 0.17 0.11
Matches are distributed among these distances:
157 34 0.06
158 169 0.29
159 227 0.39
160 5 0.01
162 5 0.01
163 3 0.01
164 3 0.01
165 1 0.00
166 2 0.00
167 1 0.00
168 4 0.01
169 6 0.01
170 1 0.00
171 2 0.00
172 2 0.00
173 2 0.00
174 6 0.01
175 4 0.01
176 3 0.01
177 2 0.00
179 3 0.01
180 2 0.00
181 3 0.01
182 1 0.00
183 4 0.01
184 87 0.15
185 1 0.00
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GGGGGACCGGGTCGATCCTCGACTTACGCATTATGCCTCTCCGATCAGCTTAGCGCTCGTACGCC
CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCGTCGGACCGAGGGT
TGTGGCAGCGGGACCAGCAGCACGCAAA
Found at i:35590483 original size:26 final size:26
Alignment explanation
Indices: 35590447--35590499 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35590437 GTTGACTTAG
35590447 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
35590473 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
35590499 G
1 G
35590500 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:35591337 original size:26 final size:26
Alignment explanation
Indices: 35591287--35591339 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35591277 GTTGACTTAG
* *
35591287 GCATACGAAGTTCATCCCTAGTCTAA
1 GCATACGAAGTCCATCCCTAATCTAA
35591313 GCATACGAAGTCCATTCCC-AATCTAA
1 GCATACGAAGTCCA-TCCCTAATCTAA
35591339 G
1 G
35591340 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTCCATCCCTAATCTAA
Found at i:35591800 original size:159 final size:157
Alignment explanation
Indices: 35591385--35591969 Score: 565
Period size: 158 Copynumber: 3.7 Consensus size: 157
35591375 ACAGGATGTA
* * * * *
35591385 AGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGATC-AGCTGAGCACCCGTAC
1 AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGA-CTGAGCGCCCGCAC
* * * * * **
35591449 GCCCTTTTCTTGGGTTGGCTGAGGCATAGGGAGTTCATTCCATGTCGAAGCCCCCGCCGGACCGA
65 GCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGA
*
35591514 GGGTTGTGGCAGCTGGACCTGCAA-CACGC
130 GGGTTGTGGCAGCAGGACC-G-AAGCACGC
* ** * ** *
35591543 AGGGGGGACCGGGTCGATCCCCTTCTTGCGCATTCTGTCTCTCCGGTCGGCTGAGCGCCCGCACG
1 AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACG
* *
35591608 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAG
66 CCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAG
* *
35591673 GGTTGTGGCAGCGGGACCGATAGCACAC
131 GGTTGTGGCAGCAGGACCGA-AGCACGC
* * * * * * *
35591701 AGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGACTCAGTGCTCGCAC
1 AG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCAC
* ** * ** * **
35591766 GCTCGTTTCGTGGGTTAACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGATT
65 GCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGACC
* * * ** *
35591829 GAGGGGTGCGGCA-TAGGTTCGACAGCATGC
128 GAGGGTTGTGGCAGCAGGACCGA-AGCACGC
** * * *
35591859 AGGGTTGACCGGGCCAATCCCCGGCTT-CGCATTCCGCCTCTCCGGCCGACTGAGC-CCTCGCAC
1 AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCC-CGCAC
35591922 -CCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
65 GCC-CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
35591970 CGCATACGGA
Statistics
Matches: 352, Mismatches: 66, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
155 5 0.01
156 66 0.19
157 22 0.06
158 150 0.43
159 106 0.30
160 3 0.01
ACGTcount: A:0.16, C:0.30, G:0.31, T:0.23
Consensus pattern (157 bp):
AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACG
CCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAG
GGTTGTGGCAGCAGGACCGAAGCACGC
Found at i:35592707 original size:26 final size:26
Alignment explanation
Indices: 35592670--35592722 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
35592660 GTTGACTTAG
35592670 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
35592696 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
35592722 G
1 G
35592723 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.80
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:35593875 original size:26 final size:26
Alignment explanation
Indices: 35593826--35593878 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35593816 GTTGGCTTAG
*
35593826 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
35593852 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
35593878 G
1 G
35593879 ATCGTACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:35594237 original size:26 final size:26
Alignment explanation
Indices: 35594207--35594258 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
35594197 GTTGACTTAG
* *
35594207 GCATATAGAGTTCATCCCCATTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
35594233 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
35594259 CATCGGACTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:35594524 original size:380 final size:380
Alignment explanation
Indices: 35593812--35594843 Score: 1088
Period size: 380 Copynumber: 2.7 Consensus size: 380
35593802 CACTCGTTTT
* * ** * ** *
35593812 ATGGGTTGGCTTAGGCATACGGAGTTCAT-TTCATGTCTAAGCATATGGAGTTCATTCCCAGTCT
1 ATGGGTTGACTTAGGCATACAGAGTTCATCCCCA-ATCTAAGCATACAGAGTTCATTCCCAATCT
* * * ** ** * ** * * * *
35593876 AAGATCGTACCGGACCAAATGTTGTGGTAGTAAGACCAGTAGCAGGATCGACAGCACGCAATGGG
65 AACATCGGATCGGACTGAGGGTTGCGACAGTAGGACCAGCAACAAGATCGACAGCACGC-A-GGG
* * * * * * * * * * * **
35593941 -GGATCGAGCCGATCCTC-GACTTGCGAATTCTACCTCTTCGGTCGGCTGAGCAACCGCACACTT
128 TGGACCGAGCCAATCCCCAG-CTTGCGCATTCTACCTCTCCAGTCAGCTAAGTACCCGCACGCCC
** * * *
35594004 GTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGT
192 GTTTCATGAATTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGT
* ** * **
35594069 TGTGGCAGCAAGACCGGAAGCGGGATCAGCAGCACGTAGAGGGGGACCGGGCTGATCCTTGACTT
257 TGTGGCAGCAGGACTAGAAGCGGGATCAGCAGCACGTAGAGGGGGACCGAGCTGATCCCCGACTT
* * * * *
35594134 GCATATTATGCCTCTCTAG-ACGGCCTCTCCGGTCGACTGAGCACCCATACGCTCGTTTC
322 GCACATTATGCCACT-TAGAACGGCCTCTCCGGTCGACTAAGCACCCACACGCTCATTTC
* *
35594193 ATGGGTTGACTTAGGCATATAGAGTTCATCCCCATTCTAAGCATACAGAGTTCATTCCCAATCTA
1 ATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAATCTA
* * * ** * * *
35594258 ACATCGGA-CTGGAGC-GAGGGTTGTGGCGGTAGGACCAGCAGTAGGATCGGCAGCACGTAGGGT
66 ACATCGGATC-GGA-CTGAGGGTTGCGACAGTAGGACCAGCAACAAGATCGACAGCACGCAGGGT
** * * * *
35594321 GGACCGAGCCAATCCTTAGCTTGCGCATTCTGCCTCTCCGGTCAGCTAAGTGCCTGCACGCCCGT
129 GGACCGAGCCAATCCCCAGCTTGCGCATTCTACCTCTCCAGTCAGCTAAGTACCCGCACGCCCGT
* * *
35594386 TTCGTGAATTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTG
194 TTCATGAATTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTG
* * *
35594451 TGGCAGCAGGACTAGCAGTGGGATC-GACAGCACGTAGAGGGGGACCGAGCTGATCCCCGGCTTG
259 TGGCAGCAGGACTAGAAGCGGGATCAG-CAGCACGTAGAGGGGGACCGAGCTGATCCCCGACTTG
* * * * *
35594515 CACATTATGCCACTTCGAACGTCCTCTTCGGTCGACTAAGCGCCCACATGCTCATTTC
323 CACATTATGCCACTTAGAACGGCCTCTCCGGTCGACTAAGCACCCACACGCTCATTTC
* * * *
35594573 ATGGGTTGACTTAGGCATACGGAGTTTATCTCCAATCTAAGCATACGGAGTTCATTCCCAATCTA
1 ATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAATCTA
* * *
35594638 AGATCGGATCGGACTGAGGGTTGCGATAGTAGGACCAGCAACAAGATCGACAGCATGCAGGGTGG
66 ACATCGGATCGGACTGAGGGTTGCGACAGTAGGACCAGCAACAAGATCGACAGCACGCAGGGTGG
* * * * * *
35594703 ATCGGGCCGATCCCCAGCTTGTGCATTCTACCTCTCCAGTCGGCTGAGTACCCGCACGCCCGTTT
131 ACCGAGCCAATCCCCAGCTTGCGCATTCTACCTCTCCAGTCAGCTAAGTACCCGCACGCCCGTTT
** *
35594768 CATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTG
196 CATGAATTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTG
*
35594833 GCAGCGGGACT
261 GCAGCAGGACT
35594844 GACAGCATGT
Statistics
Matches: 543, Mismatches: 99, Indels: 19
0.82 0.15 0.03
Matches are distributed among these distances:
379 7 0.01
380 436 0.80
381 97 0.18
382 3 0.01
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (380 bp):
ATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAATCTA
ACATCGGATCGGACTGAGGGTTGCGACAGTAGGACCAGCAACAAGATCGACAGCACGCAGGGTGG
ACCGAGCCAATCCCCAGCTTGCGCATTCTACCTCTCCAGTCAGCTAAGTACCCGCACGCCCGTTT
CATGAATTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTG
GCAGCAGGACTAGAAGCGGGATCAGCAGCACGTAGAGGGGGACCGAGCTGATCCCCGACTTGCAC
ATTATGCCACTTAGAACGGCCTCTCCGGTCGACTAAGCACCCACACGCTCATTTC
Found at i:35594623 original size:26 final size:26
Alignment explanation
Indices: 35594587--35594639 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35594577 GTTGACTTAG
*
35594587 GCATACGGAGTTTA-TCTCCAATCTAA
1 GCATACGGAGTTCATTC-CCAATCTAA
35594613 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
35594639 G
1 G
35594640 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:35595865 original size:159 final size:157
Alignment explanation
Indices: 35595512--35595887 Score: 377
Period size: 158 Copynumber: 2.4 Consensus size: 157
35595502 TAAGCATGCA
* * * *
35595512 GAGTTCATTCCCAGTCTAAGATCGGATCGGATAGAGGGTTGTGACAGCAGGATCGACAGCACGCA
1 GAGTTCATT-CCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA
* * * *
35595577 GGGGGGACCAGGCTGATCCTCGGCTTGCTCATTCTGCCTCTTCGATCGACTGAACGCCCGCACGC
65 GGGGGGACCAGGCTGATCCTCGGCTTGCTCATTATGCCTCTTCGACCGACTCAACGCCCACACGC
* * * *
35595642 CCGTTTCGTGGGTTGGCTTAGGCATAGG
130 CCATTTCATGGGTTGACTTAGGCATACG
* * * * * *
35595670 GAGGTCATTCCATGTCTAAG--CCGTAGCCAGATCGAGGGTTATGGCAGCGGGA-CTGGCAGCAC
1 GAGTTCATTCCA-GTCTAAGATCAG-A-CCGGATCGAGGGTTGTGGCAGCAGGATC-GACAGCAC
* * * **
35595732 GTAGAGGGGGACCAAG-TCGATCCTCGGCTTGC-CATTATGCCTC-TCTGACCGATTCAGTGCCC
62 GCAG-GGGGGACCAGGCT-GATCCTCGGCTTGCTCATTATGCCTCTTC-GACCGACTCAACGCCC
***
35595794 ACACTTTCATTTCATGGGTTGACTTTAGGCATACG
124 ACACGCCCATTTCATGGGTTGAC-TTAGGCATACG
*
35595829 GAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAG
1 GAGTTCATTCC-AGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGACAG
35595888 TAGGATTGGC
Statistics
Matches: 174, Mismatches: 32, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
156 2 0.01
157 7 0.04
158 83 0.48
159 77 0.44
160 3 0.02
161 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
GAGTTCATTCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG
GGGGGACCAGGCTGATCCTCGGCTTGCTCATTATGCCTCTTCGACCGACTCAACGCCCACACGCC
CATTTCATGGGTTGACTTAGGCATACG
Found at i:35596040 original size:25 final size:26
Alignment explanation
Indices: 35596006--35596057 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
35595996 GTTGACTTTG
*
35596006 GCATACGGAGTTCA-TCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35596031 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35596057 G
1 G
35596058 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35596241 original size:26 final size:26
Alignment explanation
Indices: 35596203--35596252 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
35596193 GGCTTAGGTA
*
35596203 TACGGAGTTCATTC-CACGTCTAAGCG
1 TACGGAGTGCATTCTCA-GTCTAAGCG
35596229 TACGGAGTGCATTCTCAGTCTAAG
1 TACGGAGTGCATTCTCAGTCTAAG
35596253 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (26 bp):
TACGGAGTGCATTCTCAGTCTAAGCG
Found at i:35596951 original size:26 final size:26
Alignment explanation
Indices: 35596922--35596974 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35596912 GCTAACTTAG
35596922 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
35596948 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
35596974 G
1 G
35596975 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:35597473 original size:26 final size:26
Alignment explanation
Indices: 35597423--35597475 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35597413 GTTGGCTTAG
*
35597423 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
35597449 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
35597475 G
1 G
35597476 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:35597667 original size:195 final size:196
Alignment explanation
Indices: 35597387--35597841 Score: 707
Period size: 195 Copynumber: 2.3 Consensus size: 196
35597377 TCCGGCCAAT
* *
35597387 TGAGCGTCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
* * * *
35597452 TATGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGACTAGCAGCA
66 TATAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGACCAACAGCA
* * **
35597517 GGATCGACAACATGCAGGGGGGACC-GAGGCCATCCCTGACTTGCACATTCTGCCACTCCAGTTG
131 GGATCGACAACACGCAGGGGGGACCAG-GGCCATCCCCGACTTGCACATTCTGCCACTCCAGCCG
35597581 GC
195 GC
35597583 TGAGCGCCCGCACGCTCGTTTCGTGGG-TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
** *
35597647 TATAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTTTGGCAGTAGGACCAACAGCA
66 TATAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGACCAACAGCA
* * * * **
35597712 GGATCGATAGCACGCAGGGGGGACCAGGGCCATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGG
131 GGATCGACAACACGCAGGGGGGACCAGGGCCATCCCCGACTTGCACATTCTGCCACTCCAGCCGG
35597777 C
196 C
*
35597778 TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
35597842 CCCAGCCGAA
Statistics
Matches: 237, Mismatches: 20, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
195 175 0.74
196 62 0.26
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (196 bp):
TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
TATAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGACCAACAGCA
GGATCGACAACACGCAGGGGGGACCAGGGCCATCCCCGACTTGCACATTCTGCCACTCCAGCCGG
C
Found at i:35598534 original size:26 final size:26
Alignment explanation
Indices: 35598498--35598550 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35598488 CTTGGCTTAG
*
35598498 GCATATGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
35598524 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
35598550 G
1 G
35598551 ATTTTGATCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:35599257 original size:26 final size:28
Alignment explanation
Indices: 35599221--35599274 Score: 85
Period size: 26 Copynumber: 2.0 Consensus size: 28
35599211 GCTTAGGCCA
35599221 ATACGGAGTTCATC-C-CCAATCTAAGC
1 ATACGGAGTTCATCACACCAATCTAAGC
*
35599247 ATACGGAGTTCATCACACCAGTCTAAGC
1 ATACGGAGTTCATCACACCAATCTAAGC
35599275 CTCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 14 0.56
27 1 0.04
28 10 0.40
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (28 bp):
ATACGGAGTTCATCACACCAATCTAAGC
Found at i:35600142 original size:26 final size:26
Alignment explanation
Indices: 35600106--35600158 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35600096 TTTGACTTAG
35600106 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
35600132 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35600158 G
1 G
35600159 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35600419 original size:159 final size:158
Alignment explanation
Indices: 35600129--35600635 Score: 608
Period size: 159 Copynumber: 3.2 Consensus size: 158
35600119 ATCCCCAGTC
* * *
35600129 TAAGCATATGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATT
1 TAAGCATATGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATT
* * * * *
35600193 GACAGCACACAGGGGGGACCGGGTCGATCCCCAACTTGCGCATTCTACCTCTCCAGCCGGCTGAG
65 GACAGCTCATAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTACCTCTCCGGCCGGCTGAG
*
35600258 CGCCCGCACGCCCGTTTCATGGGTTGGCT
130 CGCCCGCACGCTCGTTTCATGGGTTGGCT
* ** * * *
35600287 TAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGTAGCGGGACT
1 TAAGCATATGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGCGGTAGCAGGATT
* * * * * *
35600351 GGCAGCTCATAGAGGGGGATCGGGTCGATCCCCAGCTTACGCATTTTGCCTCTTCGGCCGGCTTA
65 GACAGCTCATAG-GGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTACCTCTCCGGCCGGCTGA
* ** *
35600416 GCGCCCGCACGCTCGTTTCGTAAGTTGACT
129 GCGCCCGCACGCTCGTTTCATGGGTTGGCT
* * * *
35600446 TATGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGGATTG
1 TAAGCATATGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATTG
*
35600511 ACAGCTCATAGTGGGGGATCGAG-CTGAT-CCCAGACTTGCGCATTCTACCTCTCCGGCCGGCTG
66 ACAGCTCATAG-GGGGGATCGGGTC-GATCCCCAG-CTTGCGCATTCTACCTCTCCGGCCGGCTG
* * *
35600574 AGCGCCCGCACGTTCGTTTTAATGGGTTAGCT
128 AGCGCCCGCACGCTCG-TTTCATGGGTTGGCT
* *
35600606 TAGGCATATGGAGTTCGTTCCATGTCTAAG
1 TAAGCATATGGAGTTCATTCCATGTCTAAG
35600636 CATATGGAGT
Statistics
Matches: 289, Mismatches: 53, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
157 3 0.01
158 65 0.22
159 186 0.64
160 35 0.12
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
TAAGCATATGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATTG
ACAGCTCATAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGC
GCCCGCACGCTCGTTTCATGGGTTGGCT
Found at i:35600645 original size:26 final size:26
Alignment explanation
Indices: 35600609--35600667 Score: 118
Period size: 26 Copynumber: 2.3 Consensus size: 26
35600599 GTTAGCTTAG
35600609 GCATATGGAGTTCGTTCCATGTCTAA
1 GCATATGGAGTTCGTTCCATGTCTAA
35600635 GCATATGGAGTTCGTTCCATGTCTAA
1 GCATATGGAGTTCGTTCCATGTCTAA
35600661 GCATATG
1 GCATATG
35600668 AGCCATGGTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCGTTCCATGTCTAA
Found at i:35602066 original size:26 final size:26
Alignment explanation
Indices: 35602030--35602082 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35602020 GTTGACTTAG
*
35602030 GCATATGGAGTTAA-TCTCCAGTCTAA
1 GCATACGGAGTTAATTC-CCAGTCTAA
*
35602056 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
35602082 G
1 G
35602083 ATTAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:35602103 original size:366 final size:355
Alignment explanation
Indices: 35601600--35602279 Score: 875
Period size: 355 Copynumber: 1.9 Consensus size: 355
35601590 CCAATCCCCA
* * * ** *
35601600 GCTTGCGCATTCTGCCTCTCCGACCGGTTGGGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGG
1 GCTTGCGCATTATGCCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGG
* * *
35601665 CATACGGAGTTTATTCCATGTCTAAGCATACTGAGTTCATTCCCAATCTAAGATTGAACTGATCA
66 CATACGGAGTTAATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTGAACTGACCA
* *
35601730 GAGGGTTGCGGTAGCAGGACCAATAGCAGGATCGACAACACGCAGGGGGG-ACGGGTCGATCCTC
131 GAGGGTTGC-G--GCA-G-----T---AGGATCGACAACACGCAGGGGGGCACGGGCCGATCCCC
* * * * * *
35601794 GACTTGCGCATTCTGCCTCTTCG-GCTGGCTGAGTGCCCGTACGCTCATTTCATGGGTTGGCTTA
184 GACTTGCGCATTCTGCCTCTACGATC-GGCTCAGAGCCCGCACGCTCATTTCATGGGTGGGCTTA
* ** *
35601858 GGCATACAGAGTTCATTCCATGCCTAAGCCCCAGCTGGACTGAGGGTTGTGGCAGCCGGACCGGT
248 GGCATACAGACTTCATTCCATGCCTAAGCCCCAGCTGGACCAAGGGTTGTGGCAGCAGGACCGGT
35601923 AGTGGGATCGACAGCACGTAGAGGGGGACCGGGCTGATCTGTG
313 AGTGGGATCGACAGCACGTAGAGGGGGACCGGGCTGATCTGTG
*
35601966 GCTTGCGCATTATGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGG
1 GCTTGCGCATTATGCCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGG
* *
35602031 CATATGGAGTTAATCTCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT-AGACTGGA
66 CATACGGAGTTAAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTGA-ACT-GA
* * * *
35602094 CCA-AGGGTTGCGGCAGTAGGTTCGACAGCACGCAGGGGGGCCCGGGCCGATCCCCGGCTTGCGC
128 CCAGAGGGTTGCGGCAGTAGGATCGACAACACGCAGGGGGGCACGGGCCGATCCCCGACTTGCGC
* * ** *
35602158 ATTTTGCCTCTACGATCGGCTCAGAGCCCGCACGCTCATTTCGTGGGTGGGCTTAGGCATAGGGT
193 ATTCTGCCTCTACGATCGGCTCAGAGCCCGCACGCTCATTTCATGGGTGGGCTTAGGCATACAGA
*
35602223 CTTCATTCCATGTCTAAGCCCCAGCTGGACCAAGGGTTGTGGCAGCAGGACCGGTAG
258 CTTCATTCCATGCCTAAGCCCCAGCTGGACCAAGGGTTGTGGCAGCAGGACCGGTAG
35602280 CATGCAGAGG
Statistics
Matches: 275, Mismatches: 34, Indels: 21
0.83 0.10 0.06
Matches are distributed among these distances:
354 21 0.08
355 123 0.45
356 1 0.00
357 1 0.00
362 1 0.00
363 3 0.01
365 2 0.01
366 115 0.42
367 8 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (355 bp):
GCTTGCGCATTATGCCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGG
CATACGGAGTTAATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTGAACTGACCA
GAGGGTTGCGGCAGTAGGATCGACAACACGCAGGGGGGCACGGGCCGATCCCCGACTTGCGCATT
CTGCCTCTACGATCGGCTCAGAGCCCGCACGCTCATTTCATGGGTGGGCTTAGGCATACAGACTT
CATTCCATGCCTAAGCCCCAGCTGGACCAAGGGTTGTGGCAGCAGGACCGGTAGTGGGATCGACA
GCACGTAGAGGGGGACCGGGCTGATCTGTG
Found at i:35602377 original size:159 final size:158
Alignment explanation
Indices: 35602089--35602377 Score: 355
Period size: 159 Copynumber: 1.8 Consensus size: 158
35602079 TAAGATTAGA
* ** * *
35602089 CTGGACCAAGGGTTGCGGCAGTAGGTTCGACAGCACGCAGGGGGGCCCGGGCCGATCCCCGGCTT
1 CTGGACCAAGGGTTGCGGCAGCAGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGATT
* * *
35602154 GCGCATTTTGCCTCTACGATCGGCTCAGAGCCCGCACGCTCATTTCGTGGGTGGGCTTAGGCATA
66 GCACATTTTGCCTCTACGATCGGCTCAGAGCCCCCACGCTCATTTCGTGGGTGGACTTAGGCATA
35602219 GGGTCTTCATTCCATGTCTAAGCCCCAG
131 GGGTCTTCATTCCATGTCTAAGCCCCAG
* ** * * *
35602247 CTGGACCAAGGGTTGTGGCAGCAGGACCGGTAGCATGCAGAGGGGGATCGGGTCGATCCCCGGAT
1 CTGGACCAAGGGTTGCGGCAGCAGGACCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCGGAT
* * * * * * * *
35602312 TGCATATTTTGCCTC-ATCGGTCGGCTCAGCGCCCCCGCGCTCGTTTTGTGGGTTGACTTATGCA
65 TGCACATTTTGCCTCTA-CGATCGGCTCAGAGCCCCCACGCTCATTTCGTGGGTGGACTTAGGCA
35602376 TA
129 TA
35602378 CAGAGTTCAT
Statistics
Matches: 107, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
158 34 0.32
159 73 0.68
ACGTcount: A:0.16, C:0.28, G:0.33, T:0.23
Consensus pattern (158 bp):
CTGGACCAAGGGTTGCGGCAGCAGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGATT
GCACATTTTGCCTCTACGATCGGCTCAGAGCCCCCACGCTCATTTCGTGGGTGGACTTAGGCATA
GGGTCTTCATTCCATGTCTAAGCCCCAG
Found at i:35602562 original size:26 final size:26
Alignment explanation
Indices: 35602532--35602584 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35602522 GTTGGCTTAG
35602532 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
35602558 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
35602584 G
1 G
35602585 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:35603915 original size:343 final size:342
Alignment explanation
Indices: 35603239--35603971 Score: 889
Period size: 342 Copynumber: 2.1 Consensus size: 342
35603229 TGAGCGCCTG
* * *
35603239 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAACCCCAGTCAAAGCATACGTAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCAAAGCACACGGAGTTC
* ** * * *
35603304 ATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGATAGCAGAATCAGCAGCATACAGGGGGG
66 ATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAGAATCAGCAGCATACAAGGGGG
* * * * ** * *
35603369 ATCGGGTCGATCCCCGACTTATGCATTATGCCTCTCTGATTGACTGAGTGCCCGCAGCTAGTTTC
131 ATCAGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACCGACTGAGCGCCCACAGCTAGTTTC
* * **
35603434 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGACTTTTGG
196 ATGGGTTGGCTTAGGCATAGGAAGGTCATTCCATGTCTAAGCCCCAGCCAAACCGAGACTTTTGG
* * * *
35603499 CAGCGGGATCGACAGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTTC
261 CAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCCAATCCCCGGCTTGCACATTATGCCTCTTC
*
35603564 GATCGGCTCAGCACCCA
326 GATCGGCTCAACACCCA
* * * *
35603581 CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCACATGGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCAAAGCACACGGAGTTC
* * * * * **
35603646 ATTCCCAGTCTAAGATCAGATCAAACCGCGGGTTGCGGCAGTAGGATCCA-CAGCATGTAAGGGG
66 ATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAGAAT-CAGCAGCATACAAGGGG
* * * *
35603710 GATCAGGCCGATCCCCTG-CTTGCGCATTCTGCCTCTCCGACCGATTGAGCGCCCACACGCTCGT
130 GATCAGGCCGATCCCC-GACTTACGCATTATGCCTCTCCGACCGACTGAGCGCCCACA-GCTAGT
* * * *
35603774 TTCGTGGGTTGGCTTAGGCATAGGAAGGTCATTCCATGTCTAAGCCCCAGTCAAACTGAG-GTTT
193 TTCATGGGTTGGCTTAGGCATAGGAAGGTCATTCCATGTCTAAGCCCCAGCCAAACCGAGACTTT
* * *
35603838 GTGGCAGCAGGACCGACAGCATGCAGAGGGGGATCGGGCCAATCCTCGGCTTGCTCATTATGCCT
258 -TGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCCAATCCCCGGCTTGCACATTATGCCT
* * **
35603903 CTTCGGTCGGCTCAACGCCTG
322 CTTCGATCGGCTCAACACCCA
* * * * *
35603924 TACACTCGTTTCAT-GGTTGACTTATGCATACAGAGTTCATTCCCAGTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTC
35603972 GAAGATCAAA
Statistics
Matches: 328, Mismatches: 59, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
342 184 0.56
343 144 0.44
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.24
Consensus pattern (342 bp):
CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCAAAGCACACGGAGTTC
ATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAGAATCAGCAGCATACAAGGGGG
ATCAGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACCGACTGAGCGCCCACAGCTAGTTTC
ATGGGTTGGCTTAGGCATAGGAAGGTCATTCCATGTCTAAGCCCCAGCCAAACCGAGACTTTTGG
CAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCCAATCCCCGGCTTGCACATTATGCCTCTTC
GATCGGCTCAACACCCA
Found at i:35604156 original size:26 final size:26
Alignment explanation
Indices: 35604109--35604158 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
35604099 AGCTTAGGCA
* *
35604109 TACGGAGTTTATTCCATGTCTAAGCG
1 TACGGAGTTCATTCCATATCTAAGCG
35604135 TACGGAGTTCATTCCCA-ATCTAAG
1 TACGGAGTTCATT-CCATATCTAAG
35604159 ATTTTAAGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCATATCTAAGCG
Found at i:35605393 original size:26 final size:26
Alignment explanation
Indices: 35605353--35605405 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35605343 GTTGACTTAG
*
35605353 GCATATAGAGCTCATCCCCAGTCTAA
1 GCATATAGAGCTCATCCCCAGACTAA
* *
35605379 GCATATAGAGTTCATTCCCAGACTAA
1 GCATATAGAGCTCATCCCCAGACTAA
35605405 G
1 G
35605406 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATATAGAGCTCATCCCCAGACTAA
Found at i:35605511 original size:184 final size:184
Alignment explanation
Indices: 35605202--35605564 Score: 512
Period size: 184 Copynumber: 2.0 Consensus size: 184
35605192 TATGCATACG
* ** * * *
35605202 GAGTTCATTCCCAGTCTAAGATCGGATTAGACCGAGGGTTGCGGCAGTAGGATCGATAGCACGCA
1 GAGTTCATTCCCAGACTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCA
* * * *
35605267 CGGGGGACTGGGTCGATCCCTGGCTTGCGCATTCTACCTCTCCGACCGACTAAGCGCCCGCACGC
66 AGGGGGACCGGGTCGATCCCTGACTTGCGCATTATACCTCTCCGACCGACTAAGCGCCCGCACGC
35605332 TTGTTTCGTGGGTTGACTTAGGCATATAGAGCTCATCCCCA-GTCTAAGCATATA
131 TTGTTTCGTGGGTTGACTTAGGCATATAGAGCTCAT-CCCATGTCTAAGCATATA
*
35605386 GAGTTCATTCCCAGACTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGACTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCA
* * * * *
35605451 AGGGGGACCGGGTCGATCCCTGACTTGCGTATTATGCCTCTCCGACTGGCTGAGCGCCCGCACGC
66 AGGGGGACCGGGTCGATCCCTGACTTGCGCATTATACCTCTCCGACCGACTAAGCGCCCGCACGC
* * * * * *
35605516 TTGTTTTGTGGGTTGGCTTAGGCTTATGGAGTTCATTCCATGTCTAAGC
131 TTGTTTCGTGGGTTGACTTAGGCATATAGAGCTCATCCCATGTCTAAGC
35605565 CCCAGCCGGA
Statistics
Matches: 156, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
183 3 0.02
184 153 0.98
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (184 bp):
GAGTTCATTCCCAGACTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCA
AGGGGGACCGGGTCGATCCCTGACTTGCGCATTATACCTCTCCGACCGACTAAGCGCCCGCACGC
TTGTTTCGTGGGTTGACTTAGGCATATAGAGCTCATCCCATGTCTAAGCATATA
Found at i:35605679 original size:157 final size:158
Alignment explanation
Indices: 35605412--35605845 Score: 482
Period size: 157 Copynumber: 2.7 Consensus size: 158
35605402 TAAGATCGGA
* * *
35605412 CCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAAGGGGGACCGGGTCGATCCCTGACTT
1 CCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCTGACTT
* * * * * *
35605477 GCGTATTATGCCTCTCCGACTGGCTGAGCGCCCGCACGCTTGTTTTGTGGGTTGGCTTAGGCTTA
66 GCGCATTATGCCTCTCCGACAGGCTAAGCGCCCGCACGCTCGTTTTGTGGGTTAGCTTAGGC-AA
35605542 T-GGAGTTCATTCCATGTCTAAGCCCCAG
130 TGGGAGTTCATTCCATGTCTAAGCCCCAG
* * * * * *
35605570 CCGGACCGAAGGTTGTGGCAGTAGGATCGGCAGCATG-TAGGGGGCCCGGGCCGATCCCTGACTT
1 CCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCTGACTT
*
35605634 GCGCATTCTGCCTCTCCGACAGGCTAAGCGCCCGCACGGC-CGTTTTGTGGGTTAGCTTAGGCAA
66 GCGCATTATGCCTCTCCGACAGGCTAAGCGCCCGCAC-GCTCGTTTTGTGGGTTAGCTTAGGCAA
35605698 TGGGAGTTCATTCCATGTCTAAGCCCCAG
130 TGGGAGTTCATTCCATGTCTAAGCCCCAG
* * * ** * * * * *
35605727 TCGGACCGAGGGTTGTGGCAAC-GAGACCGGTAGCACACAGAGGGGAATCAGGCCGATCCCTGGC
1 CCGGACCGAGGGTTGTGGCAGCAG-GATCGACAGCACGCA-AGGGGGACCGGGCCGATCCCTGAC
* * * * * * * *
35605791 TTGCACATTATGCCTTTTCGGCCGGCTCAA-TGCCCGCACGCTTGTTTCGTGGGTT
64 TTGCGCATTATGCCTCTCCGACAGGCT-AAGCGCCCGCACGCTCGTTTTGTGGGTT
35605846 GACTTATGCT
Statistics
Matches: 230, Mismatches: 39, Indels: 13
0.82 0.14 0.05
Matches are distributed among these distances:
156 3 0.01
157 131 0.57
158 35 0.15
159 59 0.26
160 2 0.01
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.23
Consensus pattern (158 bp):
CCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCTGACTT
GCGCATTATGCCTCTCCGACAGGCTAAGCGCCCGCACGCTCGTTTTGTGGGTTAGCTTAGGCAAT
GGGAGTTCATTCCATGTCTAAGCCCCAG
Found at i:35606046 original size:26 final size:26
Alignment explanation
Indices: 35606010--35606062 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35606000 GTTGGCTTAG
35606010 GCATACGGAGTTCATT-CTATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
35606036 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
35606062 G
1 G
35606063 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:35606343 original size:26 final size:26
Alignment explanation
Indices: 35606294--35606346 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35606284 GTTGGCTTAG
* * **
35606294 GCATACGGAGTTCATTCCGTGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
35606320 GCATACGAAGTTCATACCCAGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
35606346 G
1 G
35606347 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATACCCAGTCTAA
Found at i:35607348 original size:159 final size:158
Alignment explanation
Indices: 35606964--35607465 Score: 410
Period size: 158 Copynumber: 3.2 Consensus size: 158
35606954 CCCAATCTAA
* ** *
35606964 GCATACGGAGTTCATTGCCAGTCTAAGATTGGACCGGATCGAGGGTTACGG-TAGCAGGATCGGT
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGACCGGA-CGAGGGTTGTGGCT-GCAGGATCGGC
* * * * * *
35607028 AGCACGTA-AGGGGGA-TCGGGTCGATCCTCAGCTTACGTATTCTACCTCTTCGGCCGGTTGAGC
63 AGCACGTAGAGGGGGACT-GGGTCGATCCCCAGCTTACGCATTATACCTCTCCGGCCGGGTCAGC
35607091 ACCCCGCACACACATTTCGTGGGTTGGCGTAG
127 ACCCCGCACACACATTTCGTGGGTTGGCGTAG
* ** * * *
35607123 GCATAGGGAGTTCATTCCATGTCTAAGCCCAG-CTGGACGGAGGGTTGTGGCAGC-GCGATCGGC
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGGACCGGAC-GAGGGTTGTGGCTGCAG-GATCGGC
* * * *
35607186 AGCACGCAGAGGGGGACTGGGTCGATCCCCGGCTTGCGCATTATACCTCTCCGGTCGGGTCAGC-
63 AGCACGTAGAGGGGGACTGGGTCGATCCCCAGCTTACGCATTATACCTCTCCGGCCGGGTCAGCA
* * * *** *
35607250 GCCTGCTCACTTGTTTCGTGGGTT-GAGTGAG
128 CCCCGCACACACATTTCGTGGGTTGGCGT-AG
* * *
35607281 GCATATGGAGTTCATTCCCAGTCTATGATCGGACCGGAGCGAGGGTTGTGGCTGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGACCGGA-CGAGGGTTGTGGCTGCAGGATCGGCA
* * * * * * ** ** * *
35607346 GCATGTAG-GGGGGACTGGGTCAATCCCCAGCTTACACATTCTGCCTTTCCGATCGACTGAGC-G
64 GCACGTAGAGGGGGACTGGGTCGATCCCCAGCTTACGCATTATACCTCTCCGGCCGGGTCAGCAC
* * * *
35607409 CCCGCACGCTCATTTCGTGGGTTGACTTAG
129 CCCGCACACACATTTCGTGGGTTGGCGTAG
* *
35607439 GCATACAGAGTTCATCCCTAGTCTAAG
1 GCATACGGAGTTCATTCC-AGTCTAAG
35607466 CATACAGAGT
Statistics
Matches: 270, Mismatches: 60, Indels: 27
0.76 0.17 0.08
Matches are distributed among these distances:
157 7 0.03
158 158 0.59
159 102 0.38
160 3 0.01
ACGTcount: A:0.19, C:0.25, G:0.32, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACGAGGGTTGTGGCTGCAGGATCGGCAGC
ACGTAGAGGGGGACTGGGTCGATCCCCAGCTTACGCATTATACCTCTCCGGCCGGGTCAGCACCC
CGCACACACATTTCGTGGGTTGGCGTAG
Found at i:35607475 original size:26 final size:26
Alignment explanation
Indices: 35607439--35607491 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35607429 GTTGACTTAG
35607439 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
35607465 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
35607491 G
1 G
35607492 ATCGGATCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:35607826 original size:500 final size:500
Alignment explanation
Indices: 35606882--35607843 Score: 1098
Period size: 500 Copynumber: 1.9 Consensus size: 500
35606872 ATTGGCGCCG
* * * *
35606882 CATTCTGCCTCTCTGGTCGGCTGAGCGCCCGCCCCTCGTTTCGTGGGTTGACTTAGGCATACAGA
1 CATTCTGCCTCTCCGATCGACTGAGCGCCCGCCCCTCATTTCGTGGGTTGACTTAGGCATACAGA
* * * * * *
35606947 GTTCATCCCCAATCTAAGCATACGGAGTTCATTGCCAGTCTAAGATTGGACCGGATCGAGGGTTA
66 GTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCAAGGATTA
** * * * * * *
35607012 CGGTAGCAGGATCGGTAGCACGTAAGGGGGATCGGGTCGATCCTCAGCTTACGTATTCTACCTCT
131 CGACAACAGGATCGGCAGCACGCAAGGGGGACCGGGTCGATCCCCAGCTTACGCATTCTACCTCT
* * *
35607077 TCGGCCGGTTGAGCACCCCGCACACACATTTCGTGGGTTGGCGTAGGCATAGGGAGTTCATTCCA
196 TCGACCGGCTGAGCACCCCGCACACACATTTCGTGGGTTAGCGTAGGCATAGGGAGTTCATTCCA
* * * * * * **
35607142 TGTCTAAGCCCAGCTGGACGGAGGGTTGTGGCAGCGCGATCGGCAGCACGCAGAGGGGGACTGGG
261 TCTCTAAGCCCAGCCGGACCGAGGGTTGTGGCAGCGCGATCGGAAGCACGCAGAGGGAGACCGAC
* * * * *
35607207 TCGATCCCCGGCTTGCGCATTATACCTCTCCGGTCGGGTCAGCGCCTGCTCACTTGTTTCGTGGG
326 TCGATCCCCAGCTTGCGCATTATACCTCTCCGGTCGGCTCAGCGCCGGCTCACTCGTTTCATGGG
* * * * * * *
35607272 TTGAGTGAGGCATATGGAGTTCATTCCCAGTCTATGATCGGACCGGAGCGAGGGTTGTGGCT-GC
391 TTGACTGAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAG-TAGC
35607336 AGGATCGACAGCATGTAGGGGGGACTGGGTCAATCCCCAGCTTACA
455 AGGATCGACAGCATGTAGGGGGGACTGGGTCAATCCCCAGCTTACA
* *
35607382 CATTCTGCCTTTCCGATCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAG
1 CATTCTGCCTCTCCGATCGACTGAGCGCCCGC-CCCTCATTTCGTGGGTTGACTTAGGCATACAG
* * * **
35607447 AGTTCATCCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCATTTCAAGGATT
65 AGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCAAGGATT
** * * * ** * *
35607512 GTGACAACAGGATCGGCAGCATGCAGGGGGGACCAGGG-C-ATTCCCCGGCTTGTGCATTTTGCC
130 ACGACAACAGGATCGGCAGCACGCAAGGGGGACC-GGGTCGA-TCCCCAGCTTACGCATTCTACC
* * * *
35607575 TC-TCTGATCGGCTGAGCGCCCGCGCACAC-GA-TTCGTGGGTTAGCTTAGGCATAGGGAGTTCA
193 TCTTC-GACCGGCTGAGCACCC-CGCACACACATTTCGTGGGTTAGCGTAGGCATAGGGAGTTCA
* * * *
35607637 TTCCATCTCTCAGCCTTAGCCGGACCGAGGGTTGTGGCAAG-GGGATCGGAAGCACG-TGAGGGA
256 TTCCATCTCTAAGCC-CAGCCGGACCGAGGGTTGTGGC-AGCGCGATCGGAAGCACGCAGAGGGA
* * * * * *
35607700 GACCGAACT-GATCCTCAGCTTGCGCATTATTCCTCTTCGGTTGGCTCAGCGTCGGCAT-GCTCG
319 GACCG-ACTCGATCCCCAGCTTGCGCATTATACCTCTCCGGTCGGCTCAGCGCCGGC-TCACTCG
* * *
35607763 TTTCATGGGTTGACTTATGCATACGGAGTTCATTCCGAGTCTAAGATCAGACCAGACCGAGGGTT
382 TTTCATGGGTTGACTGAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
35607828 GTAGTAGCAGGATCGA
447 GTAGTAGCAGGATCGA
35607844 TAGGGGGGAT
Statistics
Matches: 378, Mismatches: 74, Indels: 20
0.80 0.16 0.04
Matches are distributed among these distances:
499 1 0.00
500 192 0.51
501 173 0.46
502 12 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (500 bp):
CATTCTGCCTCTCCGATCGACTGAGCGCCCGCCCCTCATTTCGTGGGTTGACTTAGGCATACAGA
GTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCAAGGATTA
CGACAACAGGATCGGCAGCACGCAAGGGGGACCGGGTCGATCCCCAGCTTACGCATTCTACCTCT
TCGACCGGCTGAGCACCCCGCACACACATTTCGTGGGTTAGCGTAGGCATAGGGAGTTCATTCCA
TCTCTAAGCCCAGCCGGACCGAGGGTTGTGGCAGCGCGATCGGAAGCACGCAGAGGGAGACCGAC
TCGATCCCCAGCTTGCGCATTATACCTCTCCGGTCGGCTCAGCGCCGGCTCACTCGTTTCATGGG
TTGACTGAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGTAGCA
GGATCGACAGCATGTAGGGGGGACTGGGTCAATCCCCAGCTTACA
Found at i:35608153 original size:26 final size:26
Alignment explanation
Indices: 35608116--35608168 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
35608106 GTTGACTTAG
35608116 GCATACAGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
35608142 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
35608168 G
1 G
35608169 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:35609188 original size:26 final size:26
Alignment explanation
Indices: 35609159--35609214 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
35609149 TGGGTTGACT
*
35609159 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
* *
35609185 TAAGCATATAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
35609211 TAAG
1 TAAG
35609215 ATTGAACTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:35609742 original size:26 final size:26
Alignment explanation
Indices: 35609664--35609733 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
35609654 GTTGGCTTAG
35609664 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
35609690 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
35609716 GCATACGGGGTTCATTCC
1 GCATACGGAGTTCATTCC
35609734 CAATCTAAGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:35611583 original size:20 final size:21
Alignment explanation
Indices: 35611518--35611581 Score: 119
Period size: 21 Copynumber: 3.0 Consensus size: 21
35611508 TGTGGCAGCA
35611518 GGATCGACAGCACGCAGAGGG
1 GGATCGACAGCACGCAGAGGG
35611539 GGATCGACAGCACGCAGAGGG
1 GGATCGACAGCACGCAGAGGG
*
35611560 GGATCGACAGCACGTAGAGGG
1 GGATCGACAGCACGCAGAGGG
35611581 G
1 G
35611582 ATAAAACGGG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.28, C:0.22, G:0.44, T:0.06
Consensus pattern (21 bp):
GGATCGACAGCACGCAGAGGG
Found at i:35611817 original size:26 final size:26
Alignment explanation
Indices: 35611787--35611839 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35611777 GTTGACTTAG
35611787 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCACTCCC-AGTCTAA
*
35611813 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
35611839 G
1 G
35611840 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:35612656 original size:26 final size:26
Alignment explanation
Indices: 35612627--35612680 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
35612617 GTTGGCTTAG
35612627 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
35612653 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35612679 GC
1 GC
35612681 TCAGACCGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35613012 original size:26 final size:26
Alignment explanation
Indices: 35612982--35613034 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35612972 GTTGACTTAT
*
35612982 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
35613008 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35613034 G
1 G
35613035 ATTTTTAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35613472 original size:26 final size:26
Alignment explanation
Indices: 35613435--35613487 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35613425 GTTGACTTAG
35613435 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
35613461 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
35613487 G
1 G
35613488 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:35613512 original size:15 final size:16
Alignment explanation
Indices: 35613492--35613523 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
35613482 TCTAAGATCA
35613492 GATCGACAGCA-GCAG
1 GATCGACAGCACGCAG
35613507 GATCGACAGCACGCAG
1 GATCGACAGCACGCAG
35613523 G
1 G
35613524 GGGGATCGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.31, C:0.28, G:0.34, T:0.06
Consensus pattern (16 bp):
GATCGACAGCACGCAG
Found at i:35613810 original size:26 final size:26
Alignment explanation
Indices: 35613780--35613832 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35613770 GTTGACTTAG
35613780 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
** * *
35613806 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
35613832 G
1 G
35613833 ATCGAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:35615036 original size:26 final size:26
Alignment explanation
Indices: 35614998--35615050 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35614988 GGGTTGACTG
*
35614998 AGGCATACGGAGTTCATCCCCAGTCT
1 AGGCATACAGAGTTCATCCCCAGTCT
*
35615024 AGGCATACAGAGTTCATTCCCAGTCT
1 AGGCATACAGAGTTCATCCCCAGTCT
35615050 A
1 A
35615051 AGATCAGACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
AGGCATACAGAGTTCATCCCCAGTCT
Found at i:35616049 original size:158 final size:157
Alignment explanation
Indices: 35615816--35616158 Score: 388
Period size: 158 Copynumber: 2.2 Consensus size: 157
35615806 ACTCCGTAAG
* * ** *
35615816 CTTAGATAT-GGAATGAACTCCATATGCGTAAGCTAACCCAGGAAACAAGCGTGCGTGCGCTCAG
1 CTTAGAT-TGGGAATGAACTCCGTATGCATAAGCTAACCCACAAAACAAGCGTGCGGGCGCTCAG
* * * * * * *
35615880 CCGGCCAGAGAGGTAGAATGCGCAAGCTGGGGATTGACTCGGTCCCCCCTACGTGCTGTCAATCT
65 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTACATGCTGCCAATCC
* * * *
35615945 TGCTGCTGC-AACCCT-TGATCCGGTTCGAT
130 TGCTG-T-CAAACCCTCAG-TCCAGTCCAAT
* *
35615974 CTTAGATTGGGAATGAACTCCGTATGCATAAG-TCAACCCACAAAACGAGCGTGCGGGCGCTGAG
1 CTTAGATTGGGAATGAACTCCGTATGCATAAGCT-AACCCACAAAACAAGCGTGCGGGCGCTCAG
* * * *
35616038 CCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTGCCAATCC
65 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTACATGCTGCCAATCC
35616103 TGCTGTCATAACCCTCAGTCCAGTCCAAT
130 TGCTGTCA-AACCCTCAGTCCAGTCCAAT
* *
35616132 CTTAGACTGGGAATGAACTTCGTATGC
1 CTTAGATTGGGAATGAACTCCGTATGC
35616159 TTAGACTGGG
Statistics
Matches: 156, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
156 1 0.01
157 3 0.02
158 151 0.97
159 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGATTGGGAATGAACTCCGTATGCATAAGCTAACCCACAAAACAAGCGTGCGGGCGCTCAGC
CGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTACATGCTGCCAATCCT
GCTGTCAAACCCTCAGTCCAGTCCAAT
Found at i:35616168 original size:26 final size:26
Alignment explanation
Indices: 35616132--35616184 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35616122 CCAGTCCAAT
*
35616132 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35616158 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35616184 C
1 C
35616185 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35617755 original size:26 final size:26
Alignment explanation
Indices: 35617726--35617778 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35617716 CTGGTCTGAT
*
35617726 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
35617752 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
35617778 C
1 C
35617779 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:35617830 original size:356 final size:364
Alignment explanation
Indices: 35617325--35618045 Score: 789
Period size: 356 Copynumber: 2.0 Consensus size: 364
35617315 GTGTTGTCGA
*
35617325 TCCTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGAAATGAACTCCATATGCTTAGAC
1 TCCTGCTACCGTAACCCTCAGTCCGGTCCGATCTTAGACTGGAAATGAACTCCATATGCTTAGAC
* * *
35617390 TGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGA
66 TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCT-AGCC-GTCGA
* * * * *
35617455 AGGGGTCGACTGAAGAGGCATAATGCATAAGTCGGGGATCAGCCTGGTCCCCCTCTACGTTCTGC
129 A--GGCCGACTGAAGAGGCATAATGCATAAGCCGAGGATCAGCCTGCTCCCCCTCTACGTGCTGC
**** *
35617520 CAGTCCTACTGCCACAACCCTCGATCCGGTTGGGGTTTAGACAAGGAATGAAC-TCCGTATGCCT
192 CAGTCCTACTGCCACAACCCTCGATCAAACTGGGGCTTAGACAAGGAATGAACTTCC-TATGCCT
* * * * * *
35617584 AAGTCAACCCACGAAATGATCGTACGGGGGCTCAGCTGGCCGGAGAGGTAGAATGCGTAAGCCGG
256 AAGTCAACCCACGAAACGAGCGTACGGGGGCTCAGCCGACCGAAGAGGTAGAATGCGTAAGCCAG
* * *
35617649 GGATCAGCCCGGTCACCCCCTGCGAGCTGCTGATCCTGCTGCTGG
321 GGATCAGCCCAGTC-CCCCCTGCGAGCTACCGATCCTGCTGCTGG
* ** * * * **
35617694 TCCTGCTGCCGTAACTTTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC
1 TCCTGCTACCGTAACCCTCAGTCCGGTCCGATCTTAGACTGGAAATGAACTCCATATGCTTAGAC
* *
35617759 AT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTG-TGG-G-T-G-C-T-G-A
66 -TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTAGCCGTCGAA
* * ** * ** *
35617815 -GCCGACTGGAGAGGCATAATGCGTAAGCCGAGGATTGGCCTGCTCCTCCTCTGTGTGCTGTCAG
130 GGCCGACTGAAGAGGCATAATGCATAAGCCGAGGATCAGCCTGCTCCCCCTCTACGTGCTGCCAG
** * * *
35617879 TCCTGTTGCCACAACTCTCGGTCAAACTGGGGCTTAGACATGGAATGAACTTCCTATGCCTAAGT
195 TCCTACTGCCACAACCCTCGATCAAACTGGGGCTTAGACAAGGAATGAACTTCCTATGCCTAAGT
* * ** * * *
35617944 CAACCCATGAAACGGGCGTGTGGGTGCTTAGCCGACCGAAGAGGTAGAATGTGTAAGCCAGGGAT
260 CAACCCACGAAACGAGCGTACGGGGGCTCAGCCGACCGAAGAGGTAGAATGCGTAAGCCAGGGAT
* * * *
35618009 CGGCCTAGTCCCCCTTGCGTGCTACCGATCCTGCTGC
325 CAGCCCAGTCCCCCCTGCGAGCTACCGATCCTGCTGC
35618046 CGCAACCCTC
Statistics
Matches: 293, Mismatches: 57, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
355 23 0.08
356 161 0.55
357 3 0.01
359 1 0.00
360 1 0.00
361 1 0.00
363 1 0.00
364 1 0.00
366 1 0.00
367 1 0.00
368 2 0.01
369 96 0.33
370 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (364 bp):
TCCTGCTACCGTAACCCTCAGTCCGGTCCGATCTTAGACTGGAAATGAACTCCATATGCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTAGCCGTCGAAG
GCCGACTGAAGAGGCATAATGCATAAGCCGAGGATCAGCCTGCTCCCCCTCTACGTGCTGCCAGT
CCTACTGCCACAACCCTCGATCAAACTGGGGCTTAGACAAGGAATGAACTTCCTATGCCTAAGTC
AACCCACGAAACGAGCGTACGGGGGCTCAGCCGACCGAAGAGGTAGAATGCGTAAGCCAGGGATC
AGCCCAGTCCCCCCTGCGAGCTACCGATCCTGCTGCTGG
Found at i:35619107 original size:26 final size:26
Alignment explanation
Indices: 35619068--35619120 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35619058 CTGATTTGAC
35619068 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
35619094 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
35619120 C
1 C
35619121 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:35624953 original size:26 final size:26
Alignment explanation
Indices: 35624917--35624969 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35624907 CCGATTCGAT
* *
35624917 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* *
35624943 CTTAGATTGGGGATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
35624969 C
1 C
35624970 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:35625688 original size:26 final size:26
Alignment explanation
Indices: 35625650--35625702 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35625640 GGCTCAAAAT
35625650 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35625676 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35625702 C
1 C
35625703 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35627230 original size:26 final size:26
Alignment explanation
Indices: 35627192--35627244 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35627182 CCGGTTTGAT
*
35627192 CTTATACTAGGAATGAACTAT-GTATG
1 CTTAGACTAGGAATGAACT-TCGTATG
*
35627218 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
35627244 C
1 C
35627245 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:35627642 original size:486 final size:490
Alignment explanation
Indices: 35626950--35627925 Score: 1178
Period size: 486 Copynumber: 2.0 Consensus size: 490
35626940 CAGCCGAAGG
* *
35626950 GGCATAATGCACAAGTCGGGGATCAACCCGATCCCCCTCTGCGTGCTATCGATCTCGCTGCCACA
1 GGCATAATGCACAAGTCAGGGATCAACCCGATCCCCCTCCGCGTGCTATCGATCTCGCTGCCACA
*
35627015 ACCCTAGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTAGGCATAAGCCAACCCACGAAAC
66 ACCCTAGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTAGGCATAAGCCAACCCACGAAAC
* * * * * * * *
35627080 GGGCATGCGGGCGCTCAGCCGGTCGGAGAGGTAGAATGCGTAAGTCAGGGATCGACCCGATCCCT
131 GGGCATACGGGCACTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCC
* * * * * *
35627145 CCTATGTGCTGTCGATCCTGCTGCCGCAACCC-CTAGTCCGGTTTGATCTTATACTAGGAATGAA
196 CCTACGTGCTGTCGATCCTACTGCCACAACCCTC-AGTCCGATTCGATCTTAGACTAGGAATGAA
* * * * *
35627209 CTATGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGG
260 CTACGTATGATTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAG
*** * *
35627274 GCGCTCAGTTGACT-GGAGAGGCTGATCAAAGAGGCATAATGCGAAAACCGGGGATC-A-A-CCC
325 GCGCTCAACCG-CTCGGAGAGGCCGATCAAAGAGGCATAATGCGAAAACCGAGGATCAACACCCC
* * * * *
35627335 -CTGCATGTTGTCGATCCCGCTG-CCACTCCTGCTACCATAACCCTCGGTCC-GATTGGGGCTTA
389 TCTGCATGCTGCCGATCCCACTGTCCA-TCCTGCTACCACAACCCTCGGTCCAG-CTGGGGCTTA
*
35627397 GACATGGAATGAACTCCGTATGCCTGAGCCAACCAGAGA
452 GACATGGAATGAACTCCGTATGCCTAAGCCAACCAGAGA
* ** * * * *
35627436 GGCATAATGCGCAAGTCAGGGATCGGCTCGATCCCCTTCCGCGTGCTGTCGATC-CTGCTGCCAT
1 GGCATAATGCACAAGTCAGGGATCAACCCGATCCCCCTCCGCGTGCTATCGATCTC-GCTGCCAC
* * * *
35627500 AACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
65 AACCCTAGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTAGGCATAAGCCAACCCACGAAA
* * * * *
35627565 CGGGCGTACGGGCACTCAGTCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATTGACCCGGTCCC
130 CGGGCATACGGGCACTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCC
* * * * * * *
35627630 CCCTGCGTGCTGTCGATCCTACTGTCACAAGCCTCGGTCTGATTCGATCTTAGACTGGGGATGAA
195 CCCTACGTGCTGTCGATCCTACTGCCACAACCCTCAGTCCGATTCGATCTTAGACTAGGAATGAA
* * * **
35627695 CTCCGTATGATTGGACTGGGGATGAACTTCGTATGCCTAAGTTAACCCACGAAACGAGCGTACAG
260 CTACGTATGATTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAG
* * * * **
35627760 GCGCTCAACCGGTCGGAGAGGCCGGTCGAAGAGGCATAATGCGCAAGTCGAGGATCAACCCGATC
325 GCGCTCAACCGCTCGGAGAGGCCGATCAAAGAGGCATAATGCGAAAACCGAGGATCAA--C-A-C
* *
35627825 CCCTTCTGCATGCTGCCGATCCCACTGTCGATCCTGCTGCCACAACCCTCGGTCCAGCTGGGGCT
386 CCC-TCTGCATGCTGCCGATCCCACTGTCCATCCTGCTACCACAACCCTCGGTCCAGCTGGGGCT
35627890 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
450 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
35627926 CACAAAATGA
Statistics
Matches: 407, Mismatches: 69, Indels: 19
0.82 0.14 0.04
Matches are distributed among these distances:
485 2 0.00
486 313 0.77
487 2 0.00
491 1 0.00
493 3 0.01
495 83 0.20
496 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (490 bp):
GGCATAATGCACAAGTCAGGGATCAACCCGATCCCCCTCCGCGTGCTATCGATCTCGCTGCCACA
ACCCTAGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTAGGCATAAGCCAACCCACGAAAC
GGGCATACGGGCACTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCC
CCTACGTGCTGTCGATCCTACTGCCACAACCCTCAGTCCGATTCGATCTTAGACTAGGAATGAAC
TACGTATGATTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGG
CGCTCAACCGCTCGGAGAGGCCGATCAAAGAGGCATAATGCGAAAACCGAGGATCAACACCCCTC
TGCATGCTGCCGATCCCACTGTCCATCCTGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACA
TGGAATGAACTCCGTATGCCTAAGCCAACCAGAGA
Found at i:35628153 original size:159 final size:159
Alignment explanation
Indices: 35627864--35628156 Score: 374
Period size: 159 Copynumber: 1.8 Consensus size: 159
35627854 GATCCTGCTG
* *
35627864 CCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * ** * * *
35627929 AAAATGAGCGTTCGGGTGCTCAACCTACCGGAGAGGCAGAATGCACAAGCTGGGGATCAGCCCGA
66 AAAACGAGCGTACGGGCACTCAACCTACCGGAGAGGCAGAATCCACAAGCCGAGGATCAGCCCGA
35627994 TCCCTCTCTGCGTGCTGTAAGACCCGCTA
131 TCCCTCTCTGCGTGCTGTAAGACCCGCTA
* * *
35628023 CCACAACCCTCGATCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * *** **
35628088 GAAACGGGCGTACGGGCACTC-AGCTGGTTGGAGAGGCAGAATCCGTAAGCCGAGGATC-GACCC
66 AAAACGAGCGTACGGGCACTCAACCT-ACCGGAGAGGCAGAATCCACAAGCCGAGGATCAG-CCC
35628151 GATCCC
129 GATCCC
35628157 CTTACATGCT
Statistics
Matches: 112, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
158 4 0.04
159 108 0.96
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.17
Consensus pattern (159 bp):
CCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
AAAACGAGCGTACGGGCACTCAACCTACCGGAGAGGCAGAATCCACAAGCCGAGGATCAGCCCGA
TCCCTCTCTGCGTGCTGTAAGACCCGCTA
Found at i:35628233 original size:26 final size:26
Alignment explanation
Indices: 35628204--35628254 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
35628194 TCGATCTGAT
*
35628204 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
35628230 CTTAGACTGGGGATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCTGTAT
35628255 TCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:35628425 original size:527 final size:525
Alignment explanation
Indices: 35627433--35628808 Score: 1627
Period size: 527 Copynumber: 2.6 Consensus size: 525
35627423 AGCCAACCAG
* * * * * * * * *
35627433 AGAGGCATAATGCGCAAG-TCAGGGATCGGCTCGATCCCCTTCCGCGTGCTGT-CGATCCTGCTG
1 AGAGGCAGAATGCACAAGCT-AGGGATCAGCCCGATCCCCCTCTGCGTGCTGTAAGA-CCCGCTA
* * *
35627496 CCATAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
64 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * *
35627561 GAAACGGGCGTACGGGCACTCAG-TCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATTGACCCG
129 GAAACGGGCGTACGGGCACTCAGCT-GGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCG
* * * * * * *
35627625 GTCCCCCCTGCGTGCTGTCGATCCTACTGTCACAAGCCTCG-GTCTGATTCGATCTTAGACTGGG
193 AT-CCCCTTACGTGCTGTCGATCCTACTGTCGCAACCCTCGATTC-GATT-GATCTTAGATTGGG
* * *
35627689 GATGAACTCCGTATGATTGGACTGGGGATGAACT-TCGTATGCCTAAGTTAACCCACGAAACGAG
255 AATGAACTCCGTATGATTAGACTGGGGATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAG
* ** ** * *
35627753 CGTACAGGCGCTCAACCGGTCGGAGAGGCCGGTCGAAGAGGCATAATGCGCAAGTCGAGGATCAA
319 CGTACAGGCACTCAACCAATCGGAGAGGCCGACCGAAGAGGAATAATACGCAAGTCGAGGATCAA
* * *
35627818 CCCGATCCCCTTCTGCATGCTGCCGATCCCACTGTCGATCCTGCTGCCACAACCCTCGGTCCAGC
384 CCCGATCCCCTTCTACATGCTGCAGATCCCACTGTCGATCCTACTGCCACAACCCTCGGTCCAGC
* * * ***
35627883 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTTCGGGTGC
449 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACCGACAC
* *
35627948 TCAACCTACCGG
514 TCAACCGACCGA
* *
35627960 AGAGGCAGAATGCACAAGCTGGGGATCAGCCCGATCCCTCTCTGCGTGCTGTAAGACCCGCTACC
1 AGAGGCAGAATGCACAAGCTAGGGATCAGCCCGATCCCCCTCTGCGTGCTGTAAGACCCGCTACC
* *
35628025 ACAACCCTCGATCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
66 ACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
* * * *
35628090 AACGGGCGTACGGGCACTCAGCTGGTTGGAGAGGCAGAATCCGTAAGCCGAGGATCGACCCGATC
131 AACGGGCGTACGGGCACTCAGCTGGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATC
* *
35628155 CCCTTACATGCTGTCGATCCTACTGTCGTAACCCTCGATTCGATCTGATCTTAGATTGGGAATGA
196 CCCTTACGTGCTGTCGATCCTACTGTCGCAACCCTCGATTCGAT-TGATCTTAGATTGGGAATGA
* * * * * *
35628220 ACTCTGTATGCTTAGACTGGGGATGAACTCTGTATTCCTAAGTCACCCCACGAAACGAGTGTACG
260 ACTCCGTATGATTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACA
* * * * *
35628285 GGCACTCAGCCAATCGGAGAGGCTGACCGGAGAGGAATAATACGTAAGTCGGGGATCAACCC-AG
325 GGCACTCAACCAATCGGAGAGGCCGACCGAAGAGGAATAATACGCAAGTCGAGGATCAACCCGA-
* * * *** * * *
35628349 TCCTCC-TGTACGTGCTGTAGATCCTGTTCGTCGGTCTTACTGCCACAACCCTCTGTCC-GACTG
389 TCC-CCTTCTACATGCTGCAGATCCCACT-GTCGATCCTACTGCCACAACCCTCGGTCCAG-CTG
* *
35628412 GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACCGACACTG
451 GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACCGACACTC
**
35628477 AGTCGACCGA
516 AACCGACCGA
* * * * * * * *
35628487 AGAGGCATAATGCATAAGCTAGGGATTAGCCTGGTCCCCCTCTGCGTGCTGTCAGTCTCGCTACC
1 AGAGGCAGAATGCACAAGCTAGGGATCAGCCCGATCCCCCTCTGCGTGCTGTAAGACCCGCTACC
* *
35628552 ACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
66 ACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
* * * * * * * *
35628617 AACGGGCGTACGGGCGCTCTGCCGATCGAAGAGGCAGAATGCGCAAG-CTAGGGATCGGCCTGGT
131 AACGGGCGTACGGGCACTCAGCTGGTCGAAGAGGCAGAATGCGCAAGCCGA-GGATCGACC-CGA
* * * *
35628681 TCCCCTTACGTGCTGTCGATCCTGCTATCGCAACCCTCGATGCGGTTTGATCTTAGATTGGGAAT
194 TCCCCTTACGTGCTGTCGATCCTACTGTCGCAACCCTCGATTC-GATTGATCTTAGATTGGGAAT
* * *
35628746 GAACTCCATATGGTTAGACTGGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGC
258 GAACTCCGTATGATTAGACTGGGG-ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGC
35628809 ATGTGGGGGC
Statistics
Matches: 719, Mismatches: 116, Indels: 26
0.84 0.13 0.03
Matches are distributed among these distances:
525 1 0.00
526 177 0.25
527 423 0.59
528 82 0.11
529 36 0.05
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (525 bp):
AGAGGCAGAATGCACAAGCTAGGGATCAGCCCGATCCCCCTCTGCGTGCTGTAAGACCCGCTACC
ACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
AACGGGCGTACGGGCACTCAGCTGGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATC
CCCTTACGTGCTGTCGATCCTACTGTCGCAACCCTCGATTCGATTGATCTTAGATTGGGAATGAA
CTCCGTATGATTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACAG
GCACTCAACCAATCGGAGAGGCCGACCGAAGAGGAATAATACGCAAGTCGAGGATCAACCCGATC
CCCTTCTACATGCTGCAGATCCCACTGTCGATCCTACTGCCACAACCCTCGGTCCAGCTGGGGCT
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACCGACACTCAACCG
ACCGA
Found at i:35628680 original size:159 final size:158
Alignment explanation
Indices: 35628391--35628697 Score: 434
Period size: 159 Copynumber: 1.9 Consensus size: 158
35628381 GGTCTTACTG
* *
35628391 CCACAACCCTCTGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * *
35628456 GAAACGAGCGTACCGACACTGAGTCGACCGAAGAGGCATAATGCATAAGCTAGGGATTAGCCTGG
66 GAAACGAGCGTACCGACACTCAGCCGACCGAAGAGGCAGAATGCACAAGCTAGGGATCAGCCTGG
*
35628521 TCCCCCTCTGCGTGCTGTCAGTCTCGCTA
131 TCCCCCT-TACGTGCTGTCAGTCTCGCTA
* *
35628550 CCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * * * * *
35628615 GAAACGGGCGTACGGGCGCTCTGCCGATCGAAGAGGCAGAATGCGCAAGCTAGGGATCGGCCTGG
66 GAAACGAGCGTACCGACACTCAGCCGACCGAAGAGGCAGAATGCACAAGCTAGGGATCAGCCTGG
*
35628680 TTCCCCTTACGTGCTGTC
131 TCCCCCTTACGTGCTGTC
35628698 GATCCTGCTA
Statistics
Matches: 129, Mismatches: 19, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
158 10 0.08
159 119 0.92
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
GAAACGAGCGTACCGACACTCAGCCGACCGAAGAGGCAGAATGCACAAGCTAGGGATCAGCCTGG
TCCCCCTTACGTGCTGTCAGTCTCGCTA
Found at i:35629506 original size:26 final size:25
Alignment explanation
Indices: 35629457--35629507 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
35629447 GCTCGAAATA
* *
35629457 TTAGACTGGAATGAACTTCGTATGC
1 TTAGACTGGAATGAACTCCATATGC
35629482 TTAGACATGGAATGAACTCCATATGC
1 TTAGAC-TGGAATGAACTCCATATGC
35629508 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (25 bp):
TTAGACTGGAATGAACTCCATATGC
Found at i:35629843 original size:159 final size:157
Alignment explanation
Indices: 35629480--35629925 Score: 412
Period size: 157 Copynumber: 2.8 Consensus size: 157
35629470 AACTTCGTAT
* *
35629480 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACTCACGAAACGAGGGTGCAGACGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACGCTCAA
* ** * * *
35629545 TCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACTTGCTGTCGATCC
66 TCGGCCAAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTATCGATCC
** ** * *
35629610 TGCTGCCACAACCCTTGGTCCGGTCGA
131 CACTGCCACAACCCTCAGTCAGCTCGA
* ** * * * * *
35629637 ACTTAGACTAT-GAATGAACTCTGTATGCGTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT-G
1 GCTTAGAC-ATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACGCTCA
* * * * * * *
35629700 AGCTGGCCAAAGAGGCATAATGTGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTATCGG
65 ATC-GGCCAAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCC-CTACGTGCTATCGA
* * *
35629765 TCCCACTGCCATAACCCTCAGTCTAGCTGGG
128 TCCCACTGCCACAACCCTCAGTC-AGCTCGA
* * * * ** *
35629796 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCTGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACGCTCAA
* * * * * * *
35629861 TCAGCCGAAGAGGTAGAATACGCAAGCCGAGGATC-GACCCGATCCCCCCTGCGTGCTGTCGATC
66 TCGGCCAAAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCCGATCCCCCCTACGTGCTATCGATC
35629925 C
130 C
35629926 TGCTCCCGCA
Statistics
Matches: 227, Mismatches: 55, Indels: 13
0.77 0.19 0.04
Matches are distributed among these distances:
156 2 0.01
157 88 0.39
158 48 0.21
159 88 0.39
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACGCTCAA
TCGGCCAAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTATCGATCC
CACTGCCACAACCCTCAGTCAGCTCGA
Found at i:35629996 original size:26 final size:26
Alignment explanation
Indices: 35629955--35630007 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35629945 CCAGTTCAAT
*
35629955 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35629981 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
35630007 C
1 C
35630008 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35630646 original size:26 final size:26
Alignment explanation
Indices: 35630608--35630660 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35630598 TCAGTCTGAT
35630608 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
35630634 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
35630660 C
1 C
35630661 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:35631145 original size:26 final size:26
Alignment explanation
Indices: 35631109--35631161 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35631099 CTGGTCTGAT
* *
35631109 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35631135 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35631161 C
1 C
35631162 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35631516 original size:26 final size:26
Alignment explanation
Indices: 35631466--35631517 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35631456 GATCCGATCT
**
35631466 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
35631492 TTAGACAT-GGAATGAACTCCATATGC
1 TTAGAC-TGGGAATGAACTCCATATGC
35631518 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:35632699 original size:26 final size:26
Alignment explanation
Indices: 35632662--35632713 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35632652 GCTCAAAATA
35632662 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
35632688 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
35632714 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:35633186 original size:157 final size:157
Alignment explanation
Indices: 35632687--35633186 Score: 492
Period size: 158 Copynumber: 3.2 Consensus size: 157
35632677 ACTCCGTATG
* * *
35632687 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACGTGCGGGCGTTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
** * *
35632752 CGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTTTTGATCCT
66 CGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTTGCGTGC-TTCGATCCT
* * * *
35632817 GCTTG-TGTAACCCTCAGT-CTGATCTGAT
130 GC-TGCCGCAACCCTCGGTCCGGATC-GAT
** * * * * *
35632845 CTTAGAC-TGGGAATGAACTCTATATTCATAAGTCAA-CCACGAAATGAGCGTGCGGGTGCTGAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * *
35632908 CCGATC-GATGAGGCATAATGCGTAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTACCAGT
65 CCGATCGGA-GAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCT-TGCGTGCTTCGA-T
* * * * **
35632972 CCTGCTGCCACAACCCTCGGTCTGGCTGGGG
127 CCTGCTGCCGCAACCCTCGGTCCGGATCGAT
* * * * * **
35633003 CTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAACGGGCATGTAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * *
35633068 CGATCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCCCGGTCCCTCTTGCATGCTGTCGATCCT
66 CGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTTGCGTGCT-TCGATCCT
*
35633133 GCTGCCGCAA-CCTCGGTCCGGTTCGAT
130 GCTGCCGCAACCCTCGGTCCGGATCGAT
*
35633160 CTTAGAC-TGGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
35633187 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 60, Indels: 23
0.77 0.17 0.06
Matches are distributed among these distances:
156 3 0.01
157 101 0.37
158 102 0.38
159 63 0.23
160 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTTGCGTGCTTCGATCCTG
CTGCCGCAACCCTCGGTCCGGATCGAT
Found at i:35633850 original size:159 final size:155
Alignment explanation
Indices: 35633273--35634014 Score: 636
Period size: 158 Copynumber: 4.7 Consensus size: 155
35633263 CTGACCTGAG
* * *
35633273 AGGCATAATGCACAAGCCGGGGATCGGCCCGATCACCCCTGCGTGCTGTCGATCCTGCTGCCACA
1 AGGCATAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACA
* * * *
35633338 ACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAAT
66 ACCCTCG-TCCG-GCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA-CCATGAAAT
* * * * * *
35633403 GAGTGTGTGGGCGCTGAGTCAATCGAAG
128 GAGCGTGCGGGTGCTCAGCCAATCGAAA
* * ** *
35633431 ATGCATAATGCGCAAGCTAGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTGCCAC
1 AGGCATAATGCACAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGATCCTGCTGCCAC
** *** * *
35633496 AACCCTCGGTCCGGCTGGGGCTTAGACAT-GGAATGAACTTTTTATGCCTAAG-CTAACCTTGAA
65 AACCCTC-GTCCGGCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTC-AACCATGAA
* *
35633559 ATGGGCGTGCGGGTGCTCACCCAATCGAAA
126 ATGAGCGTGCGGGTGCTCAGCCAATCGAAA
* * * * * * * * ***
35633589 AGGCAGAATGCATAAGACAGGGACCGGCCCGGT-CCCCCTACGTGCTTTCGATCCTGCTTG-TGT
1 AGGCATAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGC-TGCCAC
* * *
35633652 AACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGGAA
65 AACCCTCG-TCCG-GCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA-CCATGAAA
* * * * *
35633717 CGAGCGTGCGGGTGCTGAACCGATCGATA
127 TGAGCGTGCGGGTGCTCAGCCAATCGAAA
* * * * * *
35633746 AGGCATAATACATAAGCCGGGGATTGACCTGGTCCCCCTCTGCGTGCCGCCGATCCTGCTGCCAC
1 AGGCATAATGCACAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGATCCTGCTGCCAC
** * *
35633811 AACCCTCAGTCCGGCTGGGGCTTAGACAT-GGAATGAACTCTC-TATG-ACTAAGCCAACCTTGA
65 AACCCTC-GTCCGGCT-GATCTTAGAC-TGGGAATGAACTC-CGTATGCA-TAAGTCAACCATGA
*
35633873 AATGGGCGTGCGGGTGCTCAGCCAA-CTGAAA
125 AATGAGCGTGCGGGTGCTCAGCCAATC-GAAA
* * * * * ** *
35633904 AGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCACTACGTGCTACCGATCCTGCTGCCGCA
1 AGGCATAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACA
* *
35633969 ACCCTCTGCCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
66 ACCCTC-GTCCGG-CTGATCTTAGACTGGGAATGAACTCCGTATGC
35634015 TTAGACTAGG
Statistics
Matches: 460, Mismatches: 100, Indels: 48
0.76 0.16 0.08
Matches are distributed among these distances:
155 2 0.00
156 58 0.13
157 121 0.26
158 153 0.33
159 121 0.26
160 5 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (155 bp):
AGGCATAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACA
ACCCTCGTCCGGCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCATGAAATGAG
CGTGCGGGTGCTCAGCCAATCGAAA
Found at i:35633906 original size:315 final size:315
Alignment explanation
Indices: 35633273--35634014 Score: 979
Period size: 315 Copynumber: 2.3 Consensus size: 315
35633263 CTGACCTGAG
* * * * * *
35633273 AGGCATAATGCACAAGCCGGGGATCGGCCCGATCACCCCTGCGTGCTGTCGATCCTGCTGCCACA
1 AGGCAGAATGCACAAGACGGGGATCGGCCCGGTC-CCCCTACGTGCTATCGATCCTGCTGCCGCA
* * *
35633338 ACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAAT
65 ACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAAC
* * ** * * * *
35633403 GAGTGTGTGGGCGCTGAGTCAATCGAAGATGCATAATGCGCAAGCTAGGGATCGACCCGGTCCCC
130 GAGCGTGCGGGCGCTGAACCAATCGAAGAGGCATAATACACAAGCCAGGGATCGACCCGGTCCCC
* * * *
35633468 CTCTGCGTGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAA
195 CTCTGCGTGCCGCCGATCCTGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAA
* * * *
35633533 CTTTTTATGCCTAAGCTAACCTTGAAATGGGCGTGCGGGTGCTCACCCAATCGAAA
260 CTCTCTATGACTAAGCCAACCTTGAAATGGGCGTGCGGGTGCTCACCCAATCGAAA
* * * * * *
35633589 AGGCAGAATGCATAAGACAGGGACCGGCCCGGTCCCCCTACGTGCTTTCGATCCTGCTTG-TGTA
1 AGGCAGAATGCACAAGACGGGGATCGGCCCGGTCCCCCTACGTGCTATCGATCCTGC-TGCCGCA
*
35633653 ACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGGAAC
65 ACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAAC
* * * * * *
35633718 GAGCGTGCGGGTGCTGAACCGATCGATA-AGGCATAATACATAAGCCGGGGATTGACCTGGTCCC
130 GAGCGTGCGGGCGCTGAACCAATCGA-AGAGGCATAATACACAAGCCAGGGATCGACCCGGTCCC
35633782 CCTCTGCGTGCCGCCGATCCTGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGA
194 CCTCTGCGTGCCGCCGATCCTGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGA
*
35633847 ACTCTCTATGACTAAGCCAACCTTGAAATGGGCGTGCGGGTGCTCAGCCAA-CTGAAA
259 ACTCTCTATGACTAAGCCAACCTTGAAATGGGCGTGCGGGTGCTCACCCAATC-GAAA
* * * *
35633904 AGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCACTACGTGCTACCGATCCTGCTGCCGCA
1 AGGCAGAATGCACAAGACGGGGATCGGCCCGGTCCCC-CTACGTGCTATCGATCCTGCTGCCGCA
* * * *
35633969 ACCCTCTG-CCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
65 ACCCTC-GATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
35634015 TTAGACTAGG
Statistics
Matches: 368, Mismatches: 52, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
314 1 0.00
315 275 0.75
316 91 0.25
317 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (315 bp):
AGGCAGAATGCACAAGACGGGGATCGGCCCGGTCCCCCTACGTGCTATCGATCCTGCTGCCGCAA
CCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACG
AGCGTGCGGGCGCTGAACCAATCGAAGAGGCATAATACACAAGCCAGGGATCGACCCGGTCCCCC
TCTGCGTGCCGCCGATCCTGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAAC
TCTCTATGACTAAGCCAACCTTGAAATGGGCGTGCGGGTGCTCACCCAATCGAAA
Found at i:35634017 original size:26 final size:26
Alignment explanation
Indices: 35633988--35634040 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35633978 CCGGTCCGAT
35633988 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
35634014 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
35634040 C
1 C
35634041 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:35634749 original size:26 final size:26
Alignment explanation
Indices: 35634711--35634763 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35634701 GGCTCAAAAT
*
35634711 CTTAGGCTGGGAATGAACTCTGTATG
1 CTTAGGCTGGGAATGAACTCCGTATG
35634737 CTTAGGCAT-GGAATGAACTCCGTATG
1 CTTAGGC-TGGGAATGAACTCCGTATG
35634763 C
1 C
35634764 CTAAGTCACC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGGCTGGGAATGAACTCCGTATG
Found at i:35635080 original size:159 final size:158
Alignment explanation
Indices: 35634743--35635100 Score: 352
Period size: 158 Copynumber: 2.3 Consensus size: 158
35634733 TATGCTTAGG
* *
35634743 CATGGAATGAACTCCGTATGCCTAAGTC-ACCCTACGAAACGAGCGTGCGGTTGCTCAGCTGACC
1 CATGGAATGAACTCCGTATGCCTAAGTCAACCC-ACGAAACGAGCGTGCGGTCGCTCAGCCGACC
* * * *
35634807 GAAAAGGCAGAATGTGCAAGCCGGGGATCGACTAGATCCCCCCTGCGTGCTGTCGATCCTGCTAC
65 GAAAAGGCAGAATGCGCAAGCCGAGGATCGACCAGATCCCCCCTGCGTGCTGCCGATCCTGCTAC
* * *
35634872 CGCAACCCTCGGTCAGATCCGATCTTAGA
130 CACAACCCTCGGTCAGATCCGAGCTTAAA
** * * *
35634901 C-TGGGAATGAACTTTGTATGCATAAGTCAACCCACGAAACGAGTGTGCAGG-CGC-CAAGCCGG
1 CAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGTCGCTC-AGCCGA
* * * * * *
35634963 TCGAAGAGGCATAATGCGCAAGCCGAGGA-CTGACCCGGTCCCCCTCTGCGTGCTGCCGGTCCTG
63 CCGAAAAGGCAGAATGCGCAAGCCGAGGATC-GACCAGATCCCCC-CTGCGTGCTGCCGATCCTG
* * * * *
35635027 CTGCCACAACCTTCGGTCCGA-CTGGGGCTTAAA
126 CTACCACAACCCTCGGTCAGATC-CGAGCTTAAA
* *
35635060 CATGGAATGAACTCCCTATGCCTCAA-CCAACCCACGAAACG
1 CATGGAATGAACTCCGTATGCCT-AAGTCAACCCACGAAACG
35635101 GGTTTACGGG
Statistics
Matches: 161, Mismatches: 30, Indels: 17
0.77 0.14 0.08
Matches are distributed among these distances:
157 3 0.02
158 78 0.48
159 77 0.48
160 3 0.02
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (158 bp):
CATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTCGCTCAGCCGACCG
AAAAGGCAGAATGCGCAAGCCGAGGATCGACCAGATCCCCCCTGCGTGCTGCCGATCCTGCTACC
ACAACCCTCGGTCAGATCCGAGCTTAAA
Found at i:35635241 original size:26 final size:26
Alignment explanation
Indices: 35635212--35635264 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35635202 CCTATCCGAT
35635212 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35635238 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35635264 C
1 C
35635265 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35636821 original size:26 final size:26
Alignment explanation
Indices: 35636783--35636835 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35636773 GGCTCAAAAT
35636783 CTTAGAATAGGAATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
35636809 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGA-ATAGGAATGAACTCCGTATG
35636835 C
1 C
35636836 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGAATAGGAATGAACTCCGTATG
Found at i:35637163 original size:159 final size:157
Alignment explanation
Indices: 35636808--35637273 Score: 444
Period size: 159 Copynumber: 2.9 Consensus size: 157
35636798 AACTCCGTAT
* * *
35636808 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
35636873 -CAGGCCGGAGAGGCAGAATGCACAAGTTGGGGATCGGCCTAGTCCCCC-CTACGTGTTGTCAAT
66 CCA--CCGGAGAGGCAGAATGCGCAAGTCGAGAATCGGCC-GGTCCCCCTCTACGTGCTGTCAAT
** * *
35636936 CCTGCTACCACAACCCTCAGTCTAGTCGGA
128 CCCACTACCACAACCCTCAGTCGACTCGGA
* * * * * *
35636966 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
35637030 GCCATCCGGAGAGGCATAATGCGCAAGTCGAGAATCAGCTCGGTCCCCCTCTATGTGCTGTCGAT
65 GCCA-CCGGAGAGGCAGAATGCGCAAGTCGAGAATCGGC-CGGTCCCCCTCTACGTGCTGTCAAT
* * *
35637095 CCCACTGCCACAACCCTCGGTTCGACT-GGG
128 CCCACTACCACAACCCTCAG-TCGACTCGGA
* * **
35637125 GCTTAGACATGGAATGAACTTCC-TATGCCTAAGCCAACCAACGAAACGGGCGTGCGAACGCTCA
1 GCTTAGACATGGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
35637189 GCCGACCGGAGAGGTAGAATGCGCAAGCCGAGAATCGGCCCGATCCCCCTGT--GTGCTATCGAT
65 GCC-ACCGGAGAGGCAGAATGCGCAAGTCGAGAATCGG-CCGGTCCCCCTCTACGTGCTGTCAAT
*
35637252 CCTACTACCGA-AACCCTCAGTC
128 CCCACTACC-ACAACCCTCAGTC
35637274 CAGTCTAATC
Statistics
Matches: 251, Mismatches: 47, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
156 2 0.01
157 26 0.10
158 90 0.36
159 123 0.49
160 10 0.04
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCACCGGAGAGGCAGAATGCGCAAGTCGAGAATCGGCCGGTCCCCCTCTACGTGCTGTCAATCCC
ACTACCACAACCCTCAGTCGACTCGGA
Found at i:35637319 original size:26 final size:26
Alignment explanation
Indices: 35637283--35637338 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
35637273 CCAGTCTAAT
* *
35637283 CTTATACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35637309 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35637335 CTTA
1 CTTA
35637339 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35638328 original size:26 final size:26
Alignment explanation
Indices: 35638299--35638351 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35638289 CTGGTTCGAT
*
35638299 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35638325 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35638351 C
1 C
35638352 CTAAGTCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35638533 original size:26 final size:26
Alignment explanation
Indices: 35638495--35638550 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
35638485 CCGGTTCAAT
*
35638495 CATAGACAGGGAATGAACTCTGTATG
1 CATAGACAGGGAATGAACTCCGTATG
*
35638521 CATAGACATGGAATGAACTCCGTATG
1 CATAGACAGGGAATGAACTCCGTATG
35638547 CATA
1 CATA
35638551 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23
Consensus pattern (26 bp):
CATAGACAGGGAATGAACTCCGTATG
Found at i:35638605 original size:196 final size:196
Alignment explanation
Indices: 35638267--35638644 Score: 483
Period size: 196 Copynumber: 1.9 Consensus size: 196
35638257 ATGCTATCGA
* * * * * *
35638267 TCCTGCTATCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
1 TCCTGCTACCGCAACCCTCGGTCCGGTTCAATCATAGACAGGGAATGAACTTCGTATGCATAGAC
* * * * * * *
35638332 TGGGGATGAACTCCGTATGCCTAAGTCATCACATGAAACGAGCGTACGGGCACTCAGTCGGTCGG
66 TGGGAATGAACTCCGTATGCATAAGCCAACACATGAAACGAGCATACGGGCACTCAGTCGGCCGA
* *
35638397 AGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCAATCCTGTTGCTA
131 AGAGGCAGAATGCACAAGCCAGGGACCGACCCGATCCCCCCTACGTGCTGTCAATCCTGTTGCTA
35638462 G
196 G
*
35638463 TCCTGCTACCGTAACCCTCGGTCCGGTTCAATCATAGACAGGGAATGAAC-TCTGTATGCATAGA
1 TCCTGCTACCGCAACCCTCGGTCCGGTTCAATCATAGACAGGGAATGAACTTC-GTATGCATAGA
* ** *
35638527 CAT-GGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCATGTGGGCGCTCAGAT-GGC
65 C-TGGGAATGAACTCCGTATGCATAAGCCAACACATGAAACGAGCATACGGGCACTCAG-TCGGC
* * * * *
35638590 CGAAGAGGTAGAATGCGCAAGCCGGGGACCGGCCCGATCCCCCCTATGTGCTGTC
128 CGAAGAGGCAGAATGCACAAGCCAGGGACCGACCCGATCCCCCCTACGTGCTGTC
35638645 GATCTTACTG
Statistics
Matches: 154, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
195 2 0.01
196 150 0.97
197 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (196 bp):
TCCTGCTACCGCAACCCTCGGTCCGGTTCAATCATAGACAGGGAATGAACTTCGTATGCATAGAC
TGGGAATGAACTCCGTATGCATAAGCCAACACATGAAACGAGCATACGGGCACTCAGTCGGCCGA
AGAGGCAGAATGCACAAGCCAGGGACCGACCCGATCCCCCCTACGTGCTGTCAATCCTGTTGCTA
G
Found at i:35638948 original size:159 final size:158
Alignment explanation
Indices: 35638523--35638958 Score: 444
Period size: 159 Copynumber: 2.8 Consensus size: 158
35638513 TCTGTATGCA
* * * **
35638523 TAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCATGTGGGCGCTCAGATG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
* * * *
35638588 GCCGAAGAGGTAGAATGCGCAAGCCGGGGACCGGCCCGATCCCCCCTATGTGCTGTCGATCTTAC
66 GTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTATGTGCTGTCGATCCTAC
* * * *
35638653 TGCCACAACCCTCAGTCTGGTCTGATCT
131 TACCACAACCCTCAGTCTCGACTGAGCT
* * * * * * *
35638681 TAGAC-TAGAAATGAACTCCGTATACCTAAGTCAACCCACGAAATGAGCGTTCGGGCGCTGAGCC
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
* ** * * * * * * * * *
35638745 GATTTGAGAGGCATAATGCACAAGCCGTGGTTCGACCCAATCCCCCTCTGTGTGCTGTCGGTCCT
65 GGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTATGTGCTGTCGATCCT
* * *
35638810 GCTACCACAACCCTCGGTC-CGACTGGGGCT
129 ACTACCACAACCCTCAGTCTCGACT-GAGCT
* * * *
35638840 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGACACGGGCGTGCGAGCGCTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
* * * *
35638905 GTCGGAGAGGTAGAATGTGCAACCCGGGGATCGGCCCGGTCCCCCCTACGTGCT
66 GTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTATGTGCT
35638959 CCCGATCTTG
Statistics
Matches: 213, Mismatches: 61, Indels: 8
0.76 0.22 0.03
Matches are distributed among these distances:
157 1 0.00
158 93 0.44
159 118 0.55
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
GTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTATGTGCTGTCGATCCTAC
TACCACAACCCTCAGTCTCGACTGAGCT
Found at i:35639022 original size:158 final size:156
Alignment explanation
Indices: 35638523--35639014 Score: 480
Period size: 158 Copynumber: 3.1 Consensus size: 156
35638513 TCTGTATGCA
* * * **
35638523 TAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCATGTGGGCGCTCAGATG
1 TAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
* * * *
35638588 GCCGAAGAGGTAGAATGCGCAAGCCGGGGACCGGCCCGATCCCCCCTATGTGCTGTCGATCTTAC
65 GTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTATGTGCTGTCGATCTTGC
* *
35638653 TGCCACAACCCTCAGTCTGGTCTGATCT
130 TACCACAACCCTCGGTCTGGTC-GATCT
* * * * * * *
35638681 TAGACTAGAAATGAACTCCGTATACCTAAGTCAACCCACGAAATGAGCGTTCGGGCGCTGAGCCG
1 TAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
* ** * * * * * * * * * *
35638746 ATTTGAGAGGCATAATGCACAAGCCGTGGTTCGACCCAATCCCCCTCTGTGTGCTGTCGGTCCTG
65 GTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTATGTGCTGTCGATCTTG
* * * **
35638811 CTACCACAACCCTCGGTCCGACTGGGGCT
129 CTACCACAACCCTCGGTCTG-GTCGATCT
* * * *
35638840 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGACACGGGCGTGCGAGCGCTCAGCCG
1 TAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * **
35638905 GTCGGAGAGGTAGAATGTGCAACCCGGGGATCGGCCCGGTCCCCCCTACGTGCTCCCGATCTTGC
65 GTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTATGTGCTGTCGATCTTGC
**
35638970 TACCGTAACCCTCGGTCTGGTTCGATCT
130 TACCACAACCCTCGGTCTGG-TCGATCT
35638998 TAGACTGGGAATGAACT
1 TAGACT-GGAATGAACT
35639015 TTGTATGCTT
Statistics
Matches: 255, Mismatches: 73, Indels: 12
0.75 0.21 0.04
Matches are distributed among these distances:
157 2 0.01
158 132 0.52
159 119 0.47
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
TAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGG
TCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTATGTGCTGTCGATCTTGCT
ACCACAACCCTCGGTCTGGTCGATCT
Found at i:35639047 original size:26 final size:26
Alignment explanation
Indices: 35638996--35639048 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35638986 CTGGTTCGAT
***
35638996 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35639022 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
35639048 C
1 C
35639049 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35639669 original size:684 final size:677
Alignment explanation
Indices: 35637961--35639761 Score: 1943
Period size: 697 Copynumber: 2.6 Consensus size: 677
35637951 CCTGTTGCTG
* * *
35637961 CAACCCTCAGTCTGGTCCGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAA
1 CAACCCTCAGTCTGGTCTGATCTTAGATTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAA
** * * * *
35638026 ACGAGCGTTCGGATGCTGTGCCGGTCGGAGAGGCATAATGTGCAAGCCGGGGATCAACCCGATCC
66 ACGAGCGTTCGGGCGCTGAGCCAGTC-GAGAGGCATAATGTGCAAGCCGAGGATCAGCCCGATCC
* * * * * *
35638091 CTCTCTACGTGATG-CTGATCCCACCGCCACAACCCTCAGTCCGGCTGGGGCCTAGACATGGAAT
130 CT-T-TACGTGCTGTCAG-TCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAAT
* * * *
35638155 GAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGTGTTCAGCC-GATTGGAGAGGC
192 GAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGGATCGGAGAGGC
* *
35638219 AGAATGCGTAAGTCGAGGATCGGTCCGATCCCCCCTGCATGCTATCGATCCTGCTATCGCAACCC
257 AGAATGCGTAAGTCGGGGATCGGCCCG-TCCCCCCTGCATGCTATCGATCCTGCTATCGCAACCC
35638284 TCGGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTA
321 TCGGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTA
* * * * *
35638349 TGCCTAAGTCATCACATGAAACGAGCGTACGGGCACTCAGTCGGTCGGAGAGGCAGAATGCACAA
386 TGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCACTCAGTCGGTCGGAGAGGCAGAATGCACAA
* * **
35638414 GCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCAATCCTGTTGCTAGTCCTGCTACCGTAACC
451 GCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCAATCCCGCTGCTAGTCCTGCTACCACAACC
35638479 CTCGGTCCGGTTCAATCATAGACAGGGAATGAACTCTGTATGCATAGACATGGAATGAACTCCGT
516 CTCGGTCCGG-T--AT-AT--A-AGGG-A-G-A--C--T-T--ATAGACATGGAATGAACTCCGT
** * *
35638544 ATGCATAAGCCAACCCATGAAACGAGCATGTGGGCGCTCAGATGGCCGAAGAGGTAGAATGCGCA
564 ATGCATAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGACGGCCGAAGAGGTAGAATGCGCA
* * *
35638609 AGCCGGGGACCGGCCCGATCCCCCCTATGTGCTGTCGATCTTACTGCCA
629 AGCCGGGGACCGGCCCGATCCCCCCTATGAGCTGTCGATCCTACTACCA
* * * *
35638658 CAACCCTCAGTCTGGTCTGATCTTAGACTAGAAATGAACTCCGTATACCTAAGTCAACCCACGAA
1 CAACCCTCAGTCTGGTCTGATCTTAGATTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAA
* * * ** * * *
35638723 ATGAGCGTTCGGGCGCTGAGCCGATTTGAGAGGCATAATGCACAAGCCGTGGTTC-GACCCAATC
66 ACGAGCGTTCGGGCGCTGAGCC-AGTCGAGAGGCATAATGTGCAAGCCGAGGATCAG-CCCGAT-
* ** * * * *
35638787 CCCCTCTGTGTGCTGTCGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAAT
128 -CCCTTTACGTGCTGTCAGTCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAAT
* * * *
35638852 GAACTCCCTATGCCTAAGCCAACCCATGACACGGGCGTGCGAGCGCTCAGCCGG-TCGGAGAGGT
192 GAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGGATCGGAGAGGC
* * ** * * ** * * *
35638916 AGAATGTGCAACCCGGGGATCGGCCCGGTCCCCCCTACGTGCTCCCGATCTTGCTACCGTAACCC
257 AGAATGCGTAAGTCGGGGATCGGCCC-GTCCCCCCTGCATGCTATCGATCCTGCTATCGCAACCC
* *
35638981 TCGGTCTGGTTCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGGATGAACTCCATA
321 TCGGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTA
*
35639046 TGCCTAAGTCAACCCACAAAACGAGCGTGCGAGCACTCAGTCGACGGAGAGGCCGGTCGGAGAGG
386 TGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCACTCAGT------------CGGTCGGAGAGG
* ** * * * * *
35639111 CATAATGCGTAAGCCGGGGATC-AGCCTGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCTGGTC
439 CAGAATGCACAAGCCAGGGATCGA-CCCGATCCCCC-CTGCGTGCTGTCAATCCCGCTGCTAGTC
* * *
35639175 CTGCTGCCACAACCCTCTGTCC-G-AT-T-A-GG-G-C-T-TAGACATGGATTGAACTCCGTATG
502 CTGCTACCACAACCCTCGGTCCGGTATATAAGGGAGACTTATAGACATGGAATGAACTCCGTATG
* * * * *
35639231 CCTAGGCCAACCCACAAAACGAGCGTGCGGGCGCTCA-ACCGGTCGGAGAGGTAGAATGCGCAAG
567 CATAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGA-CGGCCGAAGAGGTAGAATGCGCAAG
* ** * * *
35639295 TCGGGGATTGG-CCGATGCCCCCTGTGAGCTGTCGATCCTACTACCG
631 CCGGGGACCGGCCCGATCCCCCCTATGAGCTGTCGATCCTACTACCA
* *
35639341 TAACCCTCGGT-TCGGTCTGATCTTAGATTAGGAAT-AACTCTGTATGCC-AAGTCAACCCACGA
1 CAACCCTCAGTCT-GGTCTGATCTTAGATTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGA
* * * * * *
35639403 AACGAGTGTGCGGGCGATGAGCCAGCCGAAGAGGGATAATGTGCAAGCCGAGGATCAGCTCGATC
65 AACGAGCGTTCGGGCGCTGAGCCAGTCG-AGAGGCATAATGTGCAAGCCGAGGATCAGCCCGATC
* * *
35639468 TGCCTTTACATGCCGTCAGTCCCGCTGCCACAA-CCTCAGTCCGATTGGGGGCTTAGACATGGAA
129 --CCTTTACGTGCTGTCAGTCCCGCTGCCACAACCCTCAGTCCGACT-GGGGCTTAGACATGGAA
* *
35639532 TGAACTCCCTATGCCTAAGCCAAAACCATGAAACGTGCGTGCCGGGTGCTCAGCCGGATCGGAGA
191 TGAACTCCCTATGCCTAAGCC-AACCCATGAAACGGGCGTG-CGGGTGCTCAGCCGGATCGGAGA
** * *
35639597 GGCAGAATGCGTAAGTCGGGGATCGGCCCAGTCAACCCTGCATGCTATCGATCCTGCTGTCACAA
254 GGCAGAATGCGTAAGTCGGGGATCGGCCC-GTCCCCCCTGCATGCTATCGATCCTGCTATCGCAA
* *
35639662 CCCTCGGTCTGG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTT
318 CCCTCGGTCTGGTTC-GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTC
* *
35639726 CGTATGCCTAAGTCAACCCACGAAATGAGCATGCGA
382 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGA
35639762 ACGCTCAGCC
Statistics
Matches: 919, Mismatches: 153, Indels: 77
0.80 0.13 0.07
Matches are distributed among these distances:
679 1 0.00
680 13 0.01
681 120 0.13
682 29 0.03
683 74 0.08
684 229 0.25
687 1 0.00
691 1 0.00
695 1 0.00
697 352 0.38
698 7 0.01
699 5 0.01
703 1 0.00
705 2 0.00
708 1 0.00
709 40 0.04
710 42 0.05
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (677 bp):
CAACCCTCAGTCTGGTCTGATCTTAGATTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAA
ACGAGCGTTCGGGCGCTGAGCCAGTCGAGAGGCATAATGTGCAAGCCGAGGATCAGCCCGATCCC
TTTACGTGCTGTCAGTCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAAC
TCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGGATCGGAGAGGCAGAA
TGCGTAAGTCGGGGATCGGCCCGTCCCCCCTGCATGCTATCGATCCTGCTATCGCAACCCTCGGT
CTGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCT
AAGTCAACCCACGAAACGAGCGTGCGAGCACTCAGTCGGTCGGAGAGGCAGAATGCACAAGCCAG
GGATCGACCCGATCCCCCCTGCGTGCTGTCAATCCCGCTGCTAGTCCTGCTACCACAACCCTCGG
TCCGGTATATAAGGGAGACTTATAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACAAAA
CGAGCATGCGGGCGCTCAGACGGCCGAAGAGGTAGAATGCGCAAGCCGGGGACCGGCCCGATCCC
CCCTATGAGCTGTCGATCCTACTACCA
Found at i:35639716 original size:26 final size:26
Alignment explanation
Indices: 35639680--35639732 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35639670 CTGGTCTGAT
35639680 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
35639706 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35639732 C
1 C
35639733 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35641477 original size:24 final size:24
Alignment explanation
Indices: 35641450--35641496 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
35641440 GGTCCGATAT
35641450 TAGACT-GGGATGAACTCCGTAGCC
1 TAGACTGGGGAT-AACTCCGTAGCC
*
35641474 TAGATTGGGGATAACTCCGTAGC
1 TAGACTGGGGATAACTCCGTAGC
35641497 TAAGTCACCC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (24 bp):
TAGACTGGGGATAACTCCGTAGCC
Found at i:35642136 original size:159 final size:158
Alignment explanation
Indices: 35641835--35642336 Score: 517
Period size: 159 Copynumber: 3.2 Consensus size: 158
35641825 CTCCTTATGG
* * * * * * *
35641835 TTAGACATGGAATGAACTCTGTATGCCTAAGCGAACCCACGAAACGAGCATGCAGGCGCTCAACT
1 TTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
* * * * * *
35641900 GGCCAGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATTCCCGCT-TGCGTGTTGTCGATCC
65 GACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGA-TCCCCCTCTGCGTGCTGTCGATCC
* * * * *
35641964 TACTGCTGTAACCCTCAGTCCGATCTGATC
129 TGCTGCCGCAACCCTCGGTTCGATCTGATC
* * * * * *
35641994 TGAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTATTGAGCC
1 TTAGACTGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
* * * *
35642059 GACCGGAGAGGCATAATGTGCAAGCCTGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCT
65 GACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCCT
* * *
35642124 GCTGCCACAACCCTTGGTTTGA-CTAGGA-C
130 GCTGCCGCAACCCTCGGTTCGATCT--GATC
* * * *
35642153 TTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
1 TTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
* * * **
35642218 GGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCTCGATCCCCC-CTATGTGCTGTCGATCCT
65 GACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCCT
* *
35642282 GCTACCGCAACCCTCGGTTCGATCCGATC
130 GCTGCCGCAACCCTCGGTTCGATCTGATC
* *
35642311 TTAAAGTAGGAATGAACTCCGTATGC
1 TTAGACT-GGAATGAACTCCGTATGC
35642337 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 59, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 66 0.24
159 202 0.73
160 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
TTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCG
ACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCCTG
CTGCCGCAACCCTCGGTTCGATCTGATC
Found at i:35642339 original size:26 final size:26
Alignment explanation
Indices: 35642310--35642362 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35642300 TCGATCCGAT
*
35642310 CTTAAAGTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
* * *
35642336 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
35642362 C
1 C
35642363 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:35652282 original size:26 final size:26
Alignment explanation
Indices: 35652246--35652298 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35652236 GTTGACTTAG
35652246 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
35652272 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
35652298 G
1 G
35652299 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Done.