Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 394 of 402
Found at i:35652560 original size:158 final size:158
Alignment explanation
Indices: 35652272--35652774 Score: 593
Period size: 158 Copynumber: 3.2 Consensus size: 158
35652262 CCCAATCTAA
* * * * *
35652272 GCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAATCGAGGGTTGCGGCAGCAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGCACCGAGGGTTGCGGCAGCAGGATCGA
* * * ** * *
35652335 CAGCACGCAGGGGGGACCGAGCCAATCCTCGGCTTGCGCATTCTATCTCTCCGGCCGACTGAGCG
65 CAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCT-TTCGGTCGACTGAGCG
** * *
35652400 CCCGCGTGCCCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * *
35652430 GCATAGGGAGTTCATTCCATGTGTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGCACCGAGGGTTGCGGCAGCAGGATCGAC
* * * *
35652494 AGCACGCAGAGGGGGACCGAGCCGATCCCCAGCTTGTGCATTATGCCTTTCGGTCGGCTCAGCGC
66 AGCACGCAG-GGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTTTCGGTCGACTGAGCGC
* *
35652559 CCGTACGCTCGTTTCGTGGGTTGACTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
35652588 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGCATCGAGGGTTGCGGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGCACCGAGGGTTGCGGCAGCAGGATCGA
* * *
35652651 CAGCACACAGGGGGGATCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGTCGACTGAGCG
65 CAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTTTC-GGTCGACTGAGCG
**
35652716 CCCGCACGCTCGTTTCGTGTATTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
35652746 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
35652775 TACGGAGTTC
Statistics
Matches: 289, Mismatches: 48, Indels: 15
0.82 0.14 0.04
Matches are distributed among these distances:
157 46 0.16
158 205 0.71
159 38 0.13
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGCACCGAGGGTTGCGGCAGCAGGATCGAC
AGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTTTCGGTCGACTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:35652782 original size:26 final size:26
Alignment explanation
Indices: 35652746--35652798 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35652736 ATTGGCTTAG
35652746 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
35652772 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35652798 G
1 G
35652799 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35653008 original size:12 final size:12
Alignment explanation
Indices: 35652991--35653021 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
35652981 CAAGGGTTGT
35652991 GGCAGCAGGATA
1 GGCAGCAGGATA
*
35653003 GGCAGCAGGATC
1 GGCAGCAGGATA
35653015 GGCAGCA
1 GGCAGCA
35653022 CGCAGAGGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.23, G:0.42, T:0.06
Consensus pattern (12 bp):
GGCAGCAGGATA
Found at i:35653176 original size:367 final size:353
Alignment explanation
Indices: 35652463--35653333 Score: 892
Period size: 367 Copynumber: 2.5 Consensus size: 353
35652453 TAAGCCCCAG
* * * * * * *
35652463 CCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGAGCCGATCCCCAGCT
1 CCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAG-GGGGGACCGGGCCAATCACCAGCT
* * * * * * * * *
35652528 TGTGCATTATGCCTTTC-GGTCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCAT
65 TGCGCATTCTGCCTCTCAGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTT-GGCAT
* ** * * * *
35652592 ACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGCATCGAGGG-T-T----GC------GGCAGC
129 AAGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGACCAAGGGTTGTGGCAGCAGGATAGGCAGC
* * * * * **
35652643 AGGATCGACAGCACACAGGGGGGATCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGTCG
192 AGGATCGACAGCACACAGGGGGGACCGAGCCAATCCCCAGCTTGCGCATTATGCCCCTCCGACCG
* * * * * * * * *
35652708 ACTGAGCGCCCGCACGCTCGTTTCGTGTATTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
257 ACTGAACACCCACACGCTCATTTCGTGGATTGACTTAGGCACACAGAGTTCATCCCATGTCTAAG
35652773 CATACGGAGTTCATTCCCAGTCTAAGATCAGA
322 CATACGGAGTTCATTCCCAGTCTAAGATCAGA
* *
35652805 CCGGATCGAGGGTTGCGATAGTAGGACCAACAGCAGGATCGACAGCACGCAGGGGGGATCGGGCC
1 CCGGACCGAGGGTTGCG---GT---------AGCAGGATCGACAGCACGCAGGGGGGACCGGGCC
* * **
35652870 AATCACCGGCTTGCGCATTCTGTCTCTCAGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTT
54 AATCACCAGCTTGCGCATTCTGCCTCTCAGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTT
* *
35652935 GGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCAGG
119 GGCTT-GGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAGCAGG
* * *
35653000 ATAGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCGAGCCAATCCCCGGCTTGCGCATTATGCC
183 ATAGGCAGCAGGATCGACAGCACACAG-GGGGGACCGAGCCAATCCCCAGCTTGCGCATTATGCC
*
35653065 CCTCCGACCGACTGAACACCCACACGCTCATTTCGTGGGTTGACTTAGGCACACAGAGTTCATCC
247 CCTCCGACCGACTGAACACCCACACGCTCATTTCGTGGATTGACTTAGGCACACAGAGTTCAT-C
* **
35653130 CCA-GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGA
311 CCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * *
35653172 CCGGACCGAGGGTTGCGGTAGTAGGATCGATAGCACGCAGGGGGGACCGGGCCAGTCCCCAGCTT
1 CCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCAATCACCAGCTT
** * * *
35653237 GCGCATTCTGCCTCTTTGGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTGGCGTAA
66 GCGCATTCTGCCTCTCAGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTGGCATAA
35653302 GGAGTTCATTCCATGTCTAAGCCCCAACCGGA
131 GGAGTTCATTCCATGTCTAAGCCCCAACCGGA
35653334 TTGAGCGTTG
Statistics
Matches: 432, Mismatches: 68, Indels: 46
0.79 0.12 0.08
Matches are distributed among these distances:
342 15 0.03
345 1 0.00
353 35 0.08
354 122 0.28
355 94 0.22
356 1 0.00
360 2 0.00
364 2 0.00
366 22 0.05
367 135 0.31
368 3 0.01
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.21
Consensus pattern (353 bp):
CCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCAATCACCAGCTT
GCGCATTCTGCCTCTCAGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTGGCATAA
GGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAGCAGGATAGGCAGCAGGA
TCGACAGCACACAGGGGGGACCGAGCCAATCCCCAGCTTGCGCATTATGCCCCTCCGACCGACTG
AACACCCACACGCTCATTTCGTGGATTGACTTAGGCACACAGAGTTCATCCCATGTCTAAGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGA
Found at i:35654355 original size:26 final size:26
Alignment explanation
Indices: 35654318--35654370 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35654308 GTTGACTTAG
* *
35654318 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
35654344 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
35654370 G
1 G
35654371 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:35655329 original size:158 final size:158
Alignment explanation
Indices: 35654855--35655354 Score: 523
Period size: 158 Copynumber: 3.2 Consensus size: 158
35654845 CCCAGTCTAA
* * *
35654855 GCATACAGAGTTCATTCCCA-GTCTAAGGTCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGATTGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
35654919 AGCACATAGGGGGGACCGGGCCGATCTTCGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGTGC
65 AGCACGTAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGC
35654984 CTGCACAC-CT-ATTTCGTGGGTTGGCTTAG
130 C--CACACGCTCATTTCGTGGGTTGGCTTAG
* ** * * * *
35655013 GCATAGGGAGTTCACTT-CATGTCTAAGCCCCAG-CCGAACTGAGGGTTGTGGCAGCGGGATCGG
1 GCATACGGAGTTCA-TTCCATGTCTAAG-ATCAGACCGGATTGAGGGTTGTGGCAGCAGGATCGA
* * * * * *
35655076 CAGCACGCAGAGGGGGATCGGGCCGATCC-CTGGCTTGTGCATTATGCCTCTCTGGCCGGCTCAG
64 CAGCACGTAG-GGGGGATCGGGCCGATCCTC-GGCTTGCGCATTCTACCTCTCCGGCCGGCTGAG
* * *
35655140 CACCCGA-ATGCTCATTTCGTGGGTTGACTTAG
127 CGCCC-ACACGCTCATTTCGTGGGTTGGCTTAG
* * * ** *
35655172 GCATACGGCGTTCATTCCCA-GTCTAAGATCAGATCGGATTGAGGGTTGTGGTAGCAAAATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGATTGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
35655236 AGCACGTAGGGAGGATCAGGTCGATCCTCGGCTTGCACATTCTACCTCTCCGACCGGCTGAGCGC
65 AGCACGTAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGC
*
35655301 CCACACGCTCGTTTCGTGGGTTGGCTTAG
130 CCACACGCTCATTTCGTGGGTTGGCTTAG
*
35655330 GCAT-GGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
35655355 CCATACGAAG
Statistics
Matches: 275, Mismatches: 53, Indels: 29
0.77 0.15 0.08
Matches are distributed among these distances:
156 3 0.01
157 20 0.07
158 132 0.48
159 118 0.43
160 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGATTGAGGGTTGTGGCAGCAGGATCGACA
GCACGTAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCC
CACACGCTCATTTCGTGGGTTGGCTTAG
Found at i:35655493 original size:183 final size:184
Alignment explanation
Indices: 35655181--35655537 Score: 427
Period size: 183 Copynumber: 1.9 Consensus size: 184
35655171 GGCATACGGC
** ** * * *
35655181 GTTCATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTGTGGTAGCAAAATTGACAGCACGTAGG
1 GTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGCGGCAGCAAAATTGACAGCACGCAGG
* * *
35655246 GAGGATCAGGTCGATCCTCGGCTTGCACATTCTACCTCTCCGACCGGCTGAGCGCCCACACGCTC
66 GAGGATCAGGTCGATCCCCGGCTTACACATTCTACCTCTCCGACCGACTGAGCGCCCACACGCTC
* * **
35655311 GTTTCGTGGGTTGGCTTAGGCAT-GGGAGTTCATTCCATGTCTAACCATACGAA
131 GTTCCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAACCATACGAA
**
35655364 GTTCATTCCCAGTCTAAGATCAGA-CAAAACCGAGGGTTGCGGCAGCAGGATCTG-CAGCACGCA
1 GTTCATTCCCAGTCTAAGATCAGATC-AAACCGAGGGTTGCGGCAGCAAAAT-TGACAGCACGCA
* * * * * * *
35655427 GGGGGGA-CTAGGTTGGTCCCCGGCTTACGCATTCTACCTCTCC-AGTCGACTGAGCTCCCGCAC
64 GGGAGGATC-AGGTCGATCCCCGGCTTACACATTCTACCTCTCCGA-CCGACTGAGCGCCCACAC
*
35655490 GCTCGTTCCATGGGTTGGCTTAGGCATACAGAGTTCATTCCTTGTCTA
127 GCTCGTTCCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
35655538 TTTCCCAGTC
Statistics
Matches: 145, Mismatches: 24, Indels: 9
0.81 0.13 0.05
Matches are distributed among these distances:
182 3 0.02
183 123 0.85
184 19 0.13
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (184 bp):
GTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGCGGCAGCAAAATTGACAGCACGCAGG
GAGGATCAGGTCGATCCCCGGCTTACACATTCTACCTCTCCGACCGACTGAGCGCCCACACGCTC
GTTCCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAACCATACGAA
Found at i:35655653 original size:13 final size:13
Alignment explanation
Indices: 35655635--35655660 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
35655625 CGCATTATGC
35655635 CTCTCCGATCAGT
1 CTCTCCGATCAGT
35655648 CTCTCCGATCAGT
1 CTCTCCGATCAGT
35655661 TGAGTGCCCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.15, T:0.31
Consensus pattern (13 bp):
CTCTCCGATCAGT
Found at i:35655727 original size:26 final size:26
Alignment explanation
Indices: 35655697--35655749 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35655687 GTTGACTTAG
*
35655697 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
35655723 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
35655749 G
1 G
35655750 ATCGAACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:35656586 original size:876 final size:866
Alignment explanation
Indices: 35654802--35656595 Score: 2140
Period size: 876 Copynumber: 2.1 Consensus size: 866
35654792 GCTTGTGCCT
* * *
35654802 GCACACTCATTTCATGGGTTGACTTAGGGACACGGAGTTCATCCCCAGTCTAAGCATACAGAGTT
1 GCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATACAGAGTT
* ** * * * * *
35654867 CATTCCCAGTCTAAGGTCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACATAGGGGG
65 CATTCCCAGTCTAAGATCAGACCAAATCAAAGGTTGCGACAGCAGGATCGACAGCACACAGGGGG
* * * * *
35654932 GACCGGGCCGATCTTCGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGTGCCTGCACACCTATT
130 GACC-GGACGATCCTCGGCTTACGCATTCTACCTCTCCAGCCGACTGAGCGCCTGCACACCTATT
* * *
35654997 TCGTGGGTTGGCTTAGGCATAGGGAGTTCACTTCATGTCTAAGCCCCAGCCGAACTGAGGGTTGT
194 TCATGGGTTGGCTTAGGCATAGGGAGTTCACTTCATGTCTAAGCCCCAGCCGAACCGAGGGTTAT
* ** * *
35655062 GGCAGCGGGATCGGCAGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTTGTGCATTATGCCTCT
259 GGCAGCGGGATCGGCAGCACACAGAAAGGGATCGGGCCGATCCCTGACTTATGCATTATGCCTCT
* *
35655127 CTGGCCGGCTCAGCACCCGAATGCTCATTTCGTGGGTTGACTTAGGCATACGGCGTTCATTCCCA
324 CCGGCCGGCTCAGCACCCGAATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * * * * *
35655192 GTCTAAGATCAGATCGGATTGAGGGTTGTGGTAGCAAAATTGACAGCACGTAGGGAGGATCAGGT
389 GTCTAAGATCAGACCAGACTAAGGGTTGCGATAGCAAAATCGACAGCACGAAGGGAGGATCAGGT
* * *
35655257 CGATCCTCGGCTTGCACATTCTACCTCTCCGACCGGCTGAGCGCCCACACGCTCGTTTCGTGGGT
454 CAATCCTCGGCTTGCACATTCTACCTCTCCGACCAGCTGAGCACCCACACGCTCGTTTCGTGGGT
* *
35655322 TGGCTTAGGCATGGGAGTTCATTCCATGTCTAACCATACGAAGTTCATTCCCAGTCTAAGATCAG
519 TGGCTTAGGCATAGGAGTTCATTCCATGTCTAACCATACGAAGTGCATTCCCAGTCTAAGATCAG
* ** * *
35655387 ACAAAACCGAGGGTTGCGGCAGCAGGATCTGCAGCACGCAGGGGGGACTAGGTTGGTCCCCGGCT
584 ACAAAACCGAGGGTTGCGGCAGCAGGATCTGCAGCACGCAGGGGGGACCAGGCCGATCCCCGACT
*
35655452 TACGCATTCTACCTCTCCAGTCGACTGAGCTCCCGCACGCTCGTTCCATGGGTTGGCTTAGGCAT
649 TACGCATTCTACCTCTCCAGTCGACTGAGCTCCCGCACGCTCGTTCCATGGGTTGGCTTAGGAAT
* *** * *
35655517 ACAGAGTTCATTCCTTGTCTATTTCCCAGTCGGATCGAGGGTTGTGGCAGTAGGACTGGCAGCGG
714 ACAGAGTTCATTCCATGTCTAGGCCCCAGTCGAATCGAGGGTTGTGGCAGTAGGACTGGCAGCGA
* * * * * * *
35655582 GATCGGTAGCATGCAGAGGGGGATCGAGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGATCAG
779 GATCGGCAACATGCAGAGGGGGACCGAGCTGATCCCCAGCTTGAGCATTATGCCTCTCCGACCAA
* * *** *
35655647 TCTCTCCGATCAGTTGAGTGCCC
844 CCTCTCCGACCAGTTGAACACCA
* *
35655670 GTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACAGAGTT
1 GCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCC-AGTCTAAGCATACAGAGTT
* * *
35655735 CATTCCCAGTCTAAGATC-GAACCAAATCAAAGGTTGCGACTGCAGGATCGGCAGCACGCAGGGG
65 CATTCCCAGTCTAAGATCAG-ACCAAATCAAAGGTTGCGACAGCAGGATCGACAGCACACAGGGG
* * * *
35655799 GGACC-GACGTAATCCTCGGCTTACGCATTCTGCCTTTCCAGTCGACTGAGCGCCTGCAC-GCTC
129 GGACCGGACG--ATCCTCGGCTTACGCATTCTACCTCTCCAGCCGACTGAGCGCCTGCACACCT-
*
35655862 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCA-TTCCATGTCTAAGCCCCAGCC-AGACCGAGG
191 ATTTCATGGGTTGGCTTAGGCATAGGGAGTTCACTT-CATGTCTAAGCCCCAGCCGA-ACCGAGG
* *
35655925 GTTATGGCAGC-GGATCGGCAGCACATAGAAAGGGTTCGGGCCGATCCCTGACTTATGCATTATG
254 GTTATGGCAGCGGGATCGGCAGCACACAGAAAGGGATCGGGCCGATCCCTGACTTATGCATTATG
* * * * * *
35655989 CCTCTCCGGCCTGCTCATCTCTCGCATGCTCGTTTCGTGGGTTGACTTAGGCA-ATCGGAGTTCA
319 CCTCTCCGGCCGGCTCAGCACCCGAATGCTCATTTCGTGGGTTGACTTAGGCATA-CGGAGTTCA
* **
35656053 TTCCCAGTCTAAGATCGGACCAGACTAAGGGTTGCGATAGCACGATCGACAGCACGAAGGG-GGA
383 TTCCCAGTCTAAGATCAGACCAGACTAAGGGTTGCGATAGCAAAATCGACAGCACGAAGGGAGGA
* * * * * *
35656117 -CTGGGTCAATCC-CGG-TTGCTCATTCTGCCTC-CCTGGCCAGCTGAGCACCCGCATGCTCGTT
448 TC-AGGTCAATCCTCGGCTTGCACATTCTACCTCTCC-GACCAGCTGAGCACCCACACGCTCGTT
*
35656178 TCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCATACGAAGTGCATTCCCAGTCT
511 TCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAACCATACGAAGTGCATTCCCAGTCT
*** * * * *
35656243 AAGATCAGACCGGACTGAGGGTTGCAGTAGTAGGACCAGCAGCAGGATC-GATAGCATGTAGGGG
576 AAGATCAGACAAAACCGAGGGTTGC--------G----GCAGCAGGATCTG-CAGCACGCAGGGG
* * ** * * * **
35656307 GGACCGGGCCGATCCTCGACTTGTGCATTTTGCCTCTCCGGTCGGTTGAGCTCCCGCACGCTCGT
628 GGACCAGGCCGATCCCCGACTTACGCATTCTACCTCTCCAGTCGACTGAGCTCCCGCACGCTCGT
* * * * *
35656372 TTCGTGGGTTGGCTTGGGAATACGGAGTTCATTCCATGTCTAGGCCCCAGTCGAATCGAGGTTTG
693 TCCATGGGTTGGCTTAGGAATACAGAGTTCATTCCATGTCTAGGCCCCAGTCGAATCGAGGGTTG
* * * *
35656437 TGGTAGTAGGA-TCGGCAGCGAGATCGGCAACATGTAGAGGGGGACCGGGCTGATCCTCAGCTTG
758 TGGCAGTAGGACT-GGCAGCGAGATCGGCAACATGCAGAGGGGGACCGAGCTGATCCCCAGCTTG
* * * *
35656501 AGCATTATGCCTCTCCGGCCAACCTCTCTGGCCGGTTGAACACCA
822 AGCATTATGCCTCTCCGACCAACCTCTCCGACCAGTTGAACACCA
* *
35656546 GCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
1 GCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCAGTC
35656596 GAAGATCAGA
Statistics
Matches: 776, Mismatches: 125, Indels: 42
0.82 0.13 0.04
Matches are distributed among these distances:
863 2 0.00
864 119 0.15
865 4 0.01
866 15 0.02
867 159 0.20
868 218 0.28
872 1 0.00
875 2 0.00
876 252 0.32
877 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (866 bp):
GCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACAGAGTTC
ATTCCCAGTCTAAGATCAGACCAAATCAAAGGTTGCGACAGCAGGATCGACAGCACACAGGGGGG
ACCGGACGATCCTCGGCTTACGCATTCTACCTCTCCAGCCGACTGAGCGCCTGCACACCTATTTC
ATGGGTTGGCTTAGGCATAGGGAGTTCACTTCATGTCTAAGCCCCAGCCGAACCGAGGGTTATGG
CAGCGGGATCGGCAGCACACAGAAAGGGATCGGGCCGATCCCTGACTTATGCATTATGCCTCTCC
GGCCGGCTCAGCACCCGAATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
CTAAGATCAGACCAGACTAAGGGTTGCGATAGCAAAATCGACAGCACGAAGGGAGGATCAGGTCA
ATCCTCGGCTTGCACATTCTACCTCTCCGACCAGCTGAGCACCCACACGCTCGTTTCGTGGGTTG
GCTTAGGCATAGGAGTTCATTCCATGTCTAACCATACGAAGTGCATTCCCAGTCTAAGATCAGAC
AAAACCGAGGGTTGCGGCAGCAGGATCTGCAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTA
CGCATTCTACCTCTCCAGTCGACTGAGCTCCCGCACGCTCGTTCCATGGGTTGGCTTAGGAATAC
AGAGTTCATTCCATGTCTAGGCCCCAGTCGAATCGAGGGTTGTGGCAGTAGGACTGGCAGCGAGA
TCGGCAACATGCAGAGGGGGACCGAGCTGATCCCCAGCTTGAGCATTATGCCTCTCCGACCAACC
TCTCCGACCAGTTGAACACCA
Found at i:35657259 original size:26 final size:26
Alignment explanation
Indices: 35657223--35657301 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
35657213 GTTGACTTAG
35657223 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
35657249 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
**
35657275 GCATACGGAGTTCATTTCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
35657301 G
1 G
35657302 ATCGAATCAG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:35658503 original size:26 final size:26
Alignment explanation
Indices: 35658474--35658526 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35658464 GTTGACTTAG
35658474 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
35658500 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35658526 G
1 G
35658527 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35658820 original size:159 final size:158
Alignment explanation
Indices: 35658536--35658842 Score: 366
Period size: 159 Copynumber: 1.9 Consensus size: 158
35658526 GATTGGACCG
* * ** *
35658536 GACCGAGGGTTGTGATAGCAGGATCGGCAGCACGCAAAGGGGACCAGGCTGATCCCTGGCTTGCG
1 GACCGAGGGTTGTGATAGCAGGACCGACAGCACGCAAAGGGGACCAGGCTGATCCCCAGCTTGCA
* ** * * * *
35658601 CATTCTGCCTCTCCGATCGACTGAGTGCCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
66 CATTCTACCTCTCCGATCGACTGAGCACCTGCACGCCCATTTCGTGGGTTGACTTAGGCATACGA
35658666 AGTTCATT-CCATGTCTAAGCCCCAGTCA
131 AGTTCATTCCCA-GTCTAAGCCCCAGTCA
* * * * *
35658694 GACCGAGGGTTGTGGTAGCAGGACCGACAGCACGTAGAGGGGGA-CTGGGTCGATCCCCAGCTTG
1 GACCGAGGGTTGTGATAGCAGGACCGACAGCACGCA-AAGGGGACCAGGCT-GATCCCCAGCTTG
* * * ** *
35658758 CACATTTTACCTCTCCGGTCGGCTGAGCACCTGCACGTTCATTTTGTGGGTTGACTTAGGCATAC
64 CACATTCTACCTCTCCGATCGACTGAGCACCTGCACGCCCATTTCGTGGGTTGACTTAGGCATAC
35658823 GAAGTTCATTCCCAGTCTAA
129 GAAGTTCATTCCCAGTCTAA
35658843 TATTTTAAGC
Statistics
Matches: 123, Mismatches: 23, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
158 36 0.29
159 84 0.68
160 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GACCGAGGGTTGTGATAGCAGGACCGACAGCACGCAAAGGGGACCAGGCTGATCCCCAGCTTGCA
CATTCTACCTCTCCGATCGACTGAGCACCTGCACGCCCATTTCGTGGGTTGACTTAGGCATACGA
AGTTCATTCCCAGTCTAAGCCCCAGTCA
Found at i:35659554 original size:26 final size:26
Alignment explanation
Indices: 35659524--35659576 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35659514 GTTGACTTTG
35659524 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
35659550 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
35659576 G
1 G
35659577 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:35659921 original size:26 final size:26
Alignment explanation
Indices: 35659892--35659944 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35659882 TTTGACTTAG
*
35659892 GCATACGGATTTCATCCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
* *
35659918 GCATATGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
35659944 G
1 G
35659945 ATCAAATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAGTCTAA
Found at i:35660844 original size:26 final size:26
Alignment explanation
Indices: 35660794--35660844 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
35660784 GTTTATTTAG
*
35660794 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
35660820 GCATATGGAGTTCATTCCTAATCTA
1 GCATACGGAGTTCATCCCCAATCTA
35660845 GGATCATACC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:35661182 original size:159 final size:158
Alignment explanation
Indices: 35660960--35661323 Score: 401
Period size: 158 Copynumber: 2.3 Consensus size: 158
35660950 CGCACGACCG
* * ** *
35660960 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGTCAAACAGAGGGTT
** ** * * *
35661025 GTGGCAGCGGGACCGACAGCACGCATAGGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCT
66 GCAGCAGCAAGACCAACAGCACACA-AGGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCC
* *
35661090 CT-TCGGCCGGCTCAGTGCCCGTACGCTCA
130 CTCT-GGCCGACTCAGCGCCCGTACGCTCA
* * *
35661119 TTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAAACAGAGGG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-TCAAACAGAGGG
* * * * * * *
35661182 TTGCAGCAGCAAGATCAACAGCACACAGGGGGGACCGGGTCGATCTCTTGCTTGTGCGTTCTGCC
64 TTGCAGCAGCAAGACCAACAGCACACAAGGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCC
* * *
35661247 CCTCTGGTCGACTGAGCGCCCGTATGCTCA
129 CCTCTGGCCGACTCAGCGCCCGTACGCTCA
* * *
35661277 TTTCGTGGGTTGGCTTAGGTATACAGAGTTCATTCCATGTCTAAGCA
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
35661324 TACAGAGTTC
Statistics
Matches: 168, Mismatches: 32, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
157 3 0.02
158 93 0.55
159 69 0.41
160 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGTCAAACAGAGGGTT
GCAGCAGCAAGACCAACAGCACACAAGGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCCC
TCTGGCCGACTCAGCGCCCGTACGCTCA
Found at i:35661333 original size:26 final size:26
Alignment explanation
Indices: 35661297--35661347 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
35661287 TGGCTTAGGT
35661297 ATACAGAGTTCATT-CCATGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
35661323 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
35661348 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:35662393 original size:26 final size:26
Alignment explanation
Indices: 35662363--35662415 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35662353 GTTGACTTAG
35662363 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * * *
35662389 GCATAGGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
35662415 G
1 G
35662416 ATCGAATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:35662735 original size:26 final size:25
Alignment explanation
Indices: 35662706--35662755 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
35662696 GTTTGCTTAG
*
35662706 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCA-GTCTAA
*
35662732 GCATATGAAGTTCATTCCAGTCTA
1 GCATACGAAGTTCATTCCAGTCTA
35662756 GGATTTTGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCAGTCTAA
Found at i:35663478 original size:26 final size:26
Alignment explanation
Indices: 35663428--35663478 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
35663418 GTTTATTTAG
*
35663428 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
35663454 GCATATGGAGTTCATTCCTAATCTA
1 GCATACGGAGTTCATCCCCAATCTA
35663479 GGATCATACC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:35663764 original size:159 final size:159
Alignment explanation
Indices: 35663592--35663957 Score: 382
Period size: 158 Copynumber: 2.3 Consensus size: 159
35663582 CCCACACGAC
* * ** *
35663592 CATTTCATA-GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAG
1 CATTTCA-AGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAAACAGAG
** ** * * * *
35663655 GGTTGTGGCAGCGGGACCGATAGCACGCATAGGGGGACCGGGTCGATCCCTGGCTTGCGCTTTAT
65 GGTTGCAGCAGCAAGACCAACAGCACACA-AGGGGGACCGGGTCGATCCCTGGCTTGCGCGTTAT
* *
35663720 GCCTCT-TCGGCCGACTCAGTGCCCGTACGCT
129 GCCCCTCT-GGCCGACTCAGCGCCCGTACGCT
* * *
35663751 CATTTCAAGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAAACAGAG
1 CATTTCAAGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCAAACAGAG
* * * * * *
35663814 GGTTGCAGCAGCAAGATCAACAGCACACAGGGGGGACCGGGTCGATCTCTTGCTTGTGCGTTCTG
65 GGTTGCAGCAGCAAGACCAACAGCACACAAGGGGGACCGGGTCGATCCCTGGCTTGCGCGTTATG
* * *
35663879 CCCCTCTGGTCGACTGAGCGCCCGTATGCT
130 CCCCTCTGGCCGACTCAGCGCCCGTACGCT
** * *
35663909 CATTTCGTGGGTTGGCTTAGGTATACAGAGTTCATTCCATGTCTAAGCA
1 CATTTCAAGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
35663958 TACAGAGTTC
Statistics
Matches: 168, Mismatches: 33, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.02
158 94 0.56
159 68 0.40
160 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
CATTTCAAGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAAACAGAGG
GTTGCAGCAGCAAGACCAACAGCACACAAGGGGGACCGGGTCGATCCCTGGCTTGCGCGTTATGC
CCCTCTGGCCGACTCAGCGCCCGTACGCT
Found at i:35663967 original size:26 final size:26
Alignment explanation
Indices: 35663931--35663981 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
35663921 TGGCTTAGGT
35663931 ATACAGAGTTCATT-CCATGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
35663957 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
35663982 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:35665027 original size:26 final size:26
Alignment explanation
Indices: 35664997--35665049 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35664987 GTTGACTTAG
*
35664997 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATAGGGAGTTCATCCCCAGTCTAA
* *
35665023 GCATAGGGTGTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATCCCCAGTCTAA
35665049 G
1 G
35665050 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATAGGGAGTTCATCCCCAGTCTAA
Found at i:35665376 original size:26 final size:25
Alignment explanation
Indices: 35665340--35665389 Score: 91
Period size: 26 Copynumber: 2.0 Consensus size: 25
35665330 GTTTGCTTAG
35665340 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
35665366 GCATACGGAGTTCATTCCAGTCTA
1 GCATACGGAGTTCATTCCAGTCTA
35665390 GGATTTTGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:35666404 original size:159 final size:157
Alignment explanation
Indices: 35666129--35666577 Score: 361
Period size: 159 Copynumber: 2.8 Consensus size: 157
35666119 GGGTTGCGAA
** * ** * * * * *
35666129 AGCAGGATCGGTAGCACACAGGGGGGATTGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGG
1 AGCAGGATCGACAGCACGCA-GGGGGACAGGGTCGATCCCCGGCTTGCACATTATACCTCTCCAG
* * * * * * ** * * * *
35666194 TCGGCTGAGCGCACGCACAC-CCGTTTCGTGAGTTTTCTTTGTCGTAGGGAGTTCATTCCATGTC
65 TCGGCTCAGCACCCGCACGCTCC-TTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCATGTC
* *
35666258 TAAG-TCCCAG-TCGGATTGAGGGTTGTGGC
129 TAAGAT--CAGATCGGACTGAGGGTTATGGC
* * * *
35666287 ATC-GAGA-CTGACAGCACGCACAGGGGGACAGGGTCGATCCCCGGCTTGCGCATTATGCCTCTT
1 AGCAG-GATC-GACAGCACG--CAGGGGGACAGGGTCGATCCCCGGCTTGCACATTATACCTCTC
* * ** *
35666350 CAGTCGGCTCAGCACCCGTATGCTCCTTTTTTGGGTTCACTTATGCATACGGAGTTCATTCCCA-
62 CAGTCGGCTCAGCACCCGCACGCTCCTTTCATGGGTTCACTTAGGCATACGGAGTTCATT-CCAT
35666414 GTCTAAGATCAGATCGGACTGAGGGTTATGGC
126 GTCTAAGATCAGATCGGACTGAGGGTTATGGC
* * * * * * *
35666446 AGCAGGATCGACAGCACGTAGGGGGGCCGGGTTGATCCTCGGCTTGCACATTCTACCTCTCCGGT
1 AGCAGGATCGACAGCACGCAGGGGGACAGGGTCGATCCCCGGCTTGCACATTATACCTCTCCAGT
* * * * **
35666511 TGGCTGAGCCCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
66 CGGCTCAGCACCCGCACGCTCCTTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCATGTCTA
35666576 AG
131 AG
35666578 CATACAGAGT
Statistics
Matches: 230, Mismatches: 50, Indels: 23
0.76 0.17 0.08
Matches are distributed among these distances:
156 3 0.01
157 91 0.40
158 13 0.06
159 113 0.49
160 10 0.04
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.26
Consensus pattern (157 bp):
AGCAGGATCGACAGCACGCAGGGGGACAGGGTCGATCCCCGGCTTGCACATTATACCTCTCCAGT
CGGCTCAGCACCCGCACGCTCCTTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCATGTCTA
AGATCAGATCGGACTGAGGGTTATGGC
Found at i:35667801 original size:26 final size:26
Alignment explanation
Indices: 35667772--35667824 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35667762 GTTGGCTTAG
*
35667772 GCATATAGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
*
35667798 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
35667824 G
1 G
35667825 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:35669345 original size:26 final size:26
Alignment explanation
Indices: 35669315--35669367 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35669305 GTTGACTTGG
35669315 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
* *
35669341 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
35669367 G
1 G
35669368 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCCAGTCTAA
Found at i:35669718 original size:26 final size:26
Alignment explanation
Indices: 35669682--35669734 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35669672 GTTGACTTAG
35669682 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
35669708 GCATATGGAGTTCATTCCCAGTTTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
35669734 G
1 G
35669735 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:35670200 original size:159 final size:157
Alignment explanation
Indices: 35669708--35670209 Score: 539
Period size: 158 Copynumber: 3.2 Consensus size: 157
35669698 CCCAGTCTAA
* * * *
35669708 GCATATGGAGTTCATTCCCA-GTTTAAGATCAGACCGAAGCGAGGGTTGCGGCAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGAC
* * * * * * * * *
35669772 AGCACGCAGGGGGGACCGAGTTGATCCCCGACTTGTGCATTTTGCCTCTCCGACCGACTGAGCGC
65 AGCACGCAGGGGGGATCGGGTCGAT-CCCGGCTTGCGCATTATGCCTCTCCGATCGACTAAGTG-
* *
35669837 CCAG-ACGTCCGTTTCTTGGGTTGGCTTAG
128 CCAGCACGTTCGTTTCGTGGGTTGGCTTAG
* * ** * * * *
35669866 GCATAGGGAGTTCATTCCATGGCTAAGCCCCAG-CCGGACCAAGGGTTGTGGCAGCAGGAAT-GG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGTAGG-ATCGA
* * *
35669929 CAGCACGCAGAGGGGGATCGGGTCGATCCCTGGCTTGC-CATTATGCCTCTTCGGTCGACTCAGT
64 CAGCACGCAG-GGGGGATCGGGTCGATCCC-GGCTTGCGCATTATGCCTCTCCGATCGACTAAGT
* * * * *
35669993 GCCCA-CTCGCTCATTTCGTGGGTTGACTTAT
127 G-CCAGCACGTTCGTTTCGTGGGTTGGCTTAG
* * *
35670024 GCATACGGAGTTCATTCCTTGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGACA
*
35670089 GCACGCAGGGGGGAATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGACTAAGTGC
66 GCACGCAGGGGGG-ATCGGGTCGATCC-CGGCTTGCGCATTATGCCTCTCCGATCGACTAAGTGC
**
35670154 TTGCACGTTCGTTTCGTGGGTTGGCTTAG
129 CAGCACGTTCGTTTCGTGGGTTGGCTTAG
35670183 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
35670210 CATATGGAGT
Statistics
Matches: 280, Mismatches: 52, Indels: 23
0.79 0.15 0.06
Matches are distributed among these distances:
157 13 0.05
158 173 0.62
159 94 0.34
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGACA
GCACGCAGGGGGGATCGGGTCGATCCCGGCTTGCGCATTATGCCTCTCCGATCGACTAAGTGCCA
GCACGTTCGTTTCGTGGGTTGGCTTAG
Found at i:35670219 original size:26 final size:26
Alignment explanation
Indices: 35670183--35670235 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35670173 GTTGGCTTAG
*
35670183 GCATACGGAGTTC-ATTCCATGTCTAA
1 GCATACGGAGTTCAATCCCA-GTCTAA
*
35670209 GCATATGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
35670235 G
1 G
35670236 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:35670944 original size:26 final size:26
Alignment explanation
Indices: 35670914--35670966 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35670904 GTTGACTTAG
35670914 GCATACGA-AGTTCATCCCCAGTCTAA
1 GCATA-GAGAGTTCATCCCCAGTCTAA
* *
35670940 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATAGAGAGTTCATCCCCAGTCTAA
35670966 G
1 G
35670967 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATAGAGAGTTCATCCCCAGTCTAA
Found at i:35671792 original size:26 final size:26
Alignment explanation
Indices: 35671714--35671783 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
35671704 GTTGGCTTAG
35671714 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
35671740 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
35671766 GCATACAGAGTTCATTCC
1 GCATACGGAGTTCATTCC
35671784 CAGTTTAAGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:35671887 original size:150 final size:150
Alignment explanation
Indices: 35671616--35671907 Score: 539
Period size: 150 Copynumber: 1.9 Consensus size: 150
35671606 GTTGACTTAT
35671616 GCATACAGAGTTCATTCCCAGTTTAAGATCCTCGGTTTACGCATTCTGCCTCTCTGGCCGACTGA
1 GCATACAGAGTTCATTCCCAGTTTAAGATCCTCGGTTTACGCATTCTGCCTCTCTGGCCGACTGA
35671681 ACCCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC
66 ACCCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC
35671746 GGAGTTCATTCCATGTCTAA
131 GGAGTTCATTCCATGTCTAA
* * * *
35671766 GCATACAGAGTTCATTCCCAGTTTAAGATGCTTGGTTTGCGCATTCTGCCTCTCTGGTCGACTGA
1 GCATACAGAGTTCATTCCCAGTTTAAGATCCTCGGTTTACGCATTCTGCCTCTCTGGCCGACTGA
*
35671831 ACGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC
66 ACCCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC
35671896 GGAGTTCATTCC
131 GGAGTTCATTCC
35671908 CAATCTAAGA
Statistics
Matches: 137, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
150 137 1.00
ACGTcount: A:0.19, C:0.26, G:0.23, T:0.31
Consensus pattern (150 bp):
GCATACAGAGTTCATTCCCAGTTTAAGATCCTCGGTTTACGCATTCTGCCTCTCTGGCCGACTGA
ACCCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC
GGAGTTCATTCCATGTCTAA
Found at i:35671914 original size:26 final size:26
Alignment explanation
Indices: 35671864--35671916 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35671854 GTTGGCTTAG
*
35671864 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
35671890 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
35671916 G
1 G
35671917 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:35673840 original size:12 final size:12
Alignment explanation
Indices: 35673823--35673852 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
35673813 GGGTTGTGGT
35673823 AGCAGGACCGAC
1 AGCAGGACCGAC
*
35673835 AGCAGGATCGAC
1 AGCAGGACCGAC
35673847 AGCAGG
1 AGCAGG
35673853 TAGAGGGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.27, G:0.37, T:0.03
Consensus pattern (12 bp):
AGCAGGACCGAC
Found at i:35673987 original size:171 final size:171
Alignment explanation
Indices: 35673744--35674070 Score: 447
Period size: 171 Copynumber: 1.9 Consensus size: 171
35673734 CTGAGCACCC
* * * * *
35673744 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATATCTAAGCCCCAGTCGGA
1 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATATCTAAGCCCCAGCCGAA
* * * * *
35673809 CCGAGGGTTGTGGTAGCAGGACCGACAGCAGGATCGACAGCAGGTAGAGGGGGATCGGGCTGATC
66 CCGAGGGTTGTGGCAGCAGGACCGACAGCAGGATCGACAGCAGGCAGAGGGAGACCGGCCTGATC
*
35673874 CCCAGCATGCGCATTATGCCTCTCCGGCTGGCTGAGTGCCA
131 CCCAGCATACGCATTATGCCTCTCCGGCTGGCTGAGTGCCA
* *
35673915 GCACTCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGAA
1 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATATCTAAGCCCCAGCCGAA
* * * * * ** *
35673980 TCGAGGGTTGTGGCAGTAGGATCGGCAGCAGGATTGGTAGCATGCAGAGGGAGACCGGCCTGATC
66 CCGAGGGTTGTGGCAGCAGGACCGACAGCAGGATCGACAGCAGGCAGAGGGAGACCGGCCTGATC
* *
35674045 CCCGGCTTACGCATTATGCCTCTCCG
131 CCCAGCATACGCATTATGCCTCTCCG
35674071 ATCGGCCTCT
Statistics
Matches: 133, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
171 133 1.00
ACGTcount: A:0.20, C:0.26, G:0.32, T:0.23
Consensus pattern (171 bp):
GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATATCTAAGCCCCAGCCGAA
CCGAGGGTTGTGGCAGCAGGACCGACAGCAGGATCGACAGCAGGCAGAGGGAGACCGGCCTGATC
CCCAGCATACGCATTATGCCTCTCCGGCTGGCTGAGTGCCA
Found at i:35674154 original size:25 final size:26
Alignment explanation
Indices: 35674126--35674203 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
35674116 GCTGACTTAG
* *
35674126 GCATTCAGAG-TTATCCCCAGTCTAA
1 GCATACAGAGCTTATTCCCAGTCTAA
*
35674151 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGCTTATTCCCAGTCTAA
*
35674177 GCATACGGAGCTTATTCCCAGTCTAA
1 GCATACAGAGCTTATTCCCAGTCTAA
35674203 G
1 G
35674204 ATTGGACCGG
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
25 9 0.19
26 39 0.81
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGAGCTTATTCCCAGTCTAA
Found at i:35674824 original size:342 final size:343
Alignment explanation
Indices: 35674167--35674861 Score: 907
Period size: 342 Copynumber: 2.0 Consensus size: 343
35674157 AGAGTTTATT
* * * *
35674167 CCCAGTCTAAGCATACGGAGCTTATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGAAAGT
1 CCCAGTCTAAGCATACGGAGCTTACTCCCAGTCTAAGATCGGACCAGATCGAGGGTTACGAAAGT
** * * *
35674232 AGGATCGGTAGCACGCAGGGGGGATCGGGTCGATCTTCGGCTTGCGCATTCTGCCTCTCCGACCA
66 AGGATCGACAGCACACAGGAGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCA
* * * *
35674297 GCTAAGCGCTCGTACGCCCGTTTCATGGGTTGGCTTGGGCATAAGGAGTTCATTTCATGTCTAAG
131 GCTAAGCACCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAG
** * *
35674362 CCCCAGCCAGACCGAGGATTGTGGCAATGGGACCGACAGCACGCAGAGGAGGATTGGGTCGATCC
196 CCCCAGCCAGACCGAGGATTGTGGCAACAGGACCGACAGCACGCAAAGGAGGACTGGGTCGATCC
* * * * *
35674427 CCGGCTTGTGCATTATTCCTCTTCGACCGGCTCAGTGCTCGCATGCTCGTTTCATGGGTTGACTT
261 CCGACTTGTGCATTATGCCTCTTCGACCGGCTCAGCGCTCGCACGCTCATTTCATGGGTTGACTT
35674492 AGGCATAAGAAGTTCATC
326 AGGCATAAGAAGTTCATC
* *
35674510 CCCAGTCTAAGCATACGGAG-TTCACT-GCAGTCTAAGATCGGACCAGA-CTGAGGGTTACGATA
1 CCCAGTCTAAGCATACGGAGCTT-ACTCCCAGTCTAAGATCGGACCAGATC-GAGGGTTACGAAA
*
35674572 GTAGGATCGACAGCACACAGGAGGGATCGGG-CTGATCCTCGGCTTGCGCATTCTGCCTCTCTGA
64 GTAGGATCGACAGCACACAGGAGGGATCGGGTC-GATCCTCGGCTTGCGCATTCTGCCTCTCCGA
* * * * *
35674636 CCGGTTGAGCACCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
128 CCAGCTAAGCACCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCT
* * * * * * *
35674701 AAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCATGTAAAGGGGGACTGGG-CTG
193 AAGCCCCAGCCAGACCGAGGATTGTGGCAACAGGACCGACAGCACGCAAAGGAGGACTGGGTC-G
* **
35674765 ATCCTCGACTTGTGCATTATGCCTCTTCGGTCGGCTCAGCG-TCCGCACGCTCATTTCATGGGTT
257 ATCCCCGACTTGTGCATTATGCCTCTTCGACCGGCTCAGCGCT-CGCACGCTCATTTCATGGGTT
* * * *
35674829 GACTTATGCATACGGAGTTCATT
321 GACTTAGGCATAAGAAGTTCATC
35674852 CCCAGTCTAA
1 CCCAGTCTAA
35674862 TATTAGATCA
Statistics
Matches: 303, Mismatches: 44, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
341 4 0.01
342 277 0.91
343 22 0.07
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (343 bp):
CCCAGTCTAAGCATACGGAGCTTACTCCCAGTCTAAGATCGGACCAGATCGAGGGTTACGAAAGT
AGGATCGACAGCACACAGGAGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCA
GCTAAGCACCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAG
CCCCAGCCAGACCGAGGATTGTGGCAACAGGACCGACAGCACGCAAAGGAGGACTGGGTCGATCC
CCGACTTGTGCATTATGCCTCTTCGACCGGCTCAGCGCTCGCACGCTCATTTCATGGGTTGACTT
AGGCATAAGAAGTTCATC
Found at i:35675805 original size:341 final size:343
Alignment explanation
Indices: 35675177--35675920 Score: 856
Period size: 342 Copynumber: 2.2 Consensus size: 343
35675167 TGGTCGACTG
* * * *
35675177 AGTGCCCACACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
1 AGTGCCCACACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATCTCCAGTCTAAGCAAA
* * * *
35675242 CAGAGTTCATTCCCAGTCCAAGATCGGATCGAATCAAGGGTGGCGGCAGCAGGATCAACAGCACG
66 CAGAGTTCATTCCCAGTCCAAGATCAGACCGAACCAAGGGTGGCGGCAACAGGATCAACAGCACG
* * ** * *
35675307 TAAGGGGGACCAAGTCGATCCACGGCTTGCAGACTTTACCTCTTTGGTCGGTTGAGAGCCCGCAT
131 TAAGGGGGACCAAGTCGATCCACGACTTACAGACTTTACCTCTCAGGCCGGTTGAGAGCCCGCAC
** * * **
35675372 GCCCGTTTTGCGGGTTGGCTTAGGCATAGGGACTTCATTCCATGTCTAAGCCCCAGCCGGACCGA
196 GCCCGTTTCACGGGTTGGCTTAGGCATAGGGACTTCATTCCAAGTCTAAGCCCCACCCAAACCGA
* * * **
35675437 GGGTTGTGGCAGTGGGATCGATAGCACACAGAGGGGGA-CGAGCCGATCCTCGACTTACGTATTA
261 GGGTTGTGGCAGCGGGACCGATAGCACACAGAGGGGGACCGAGCCGATCCACGACTTACACATTA
*
35675501 TGCCTCTCCTGCCAGCTC
326 TGCCTCTCCGGCCAGCTC
* * * * *
35675519 AGTGCCCCCACGCTCGTTTCATGGGTTGACTTTTGCATACGAAGTTCATCTCTAGTCTATGCAAA
1 AGTGCCCACACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATCTCCAGTCTAAGCAAA
* * * ***
35675584 CGGAGTTCATTCCCAG-CCTAAGATCAGACCGGACCAAGGGTTGCGGCAACAGGATCGGTAGCAC
66 CAGAGTTCATTCCCAGTCC-AAGATCAGACCGAACCAAGGGTGGCGGCAACAGGATCAACAGCAC
* * * *
35675648 G-AAGGGGGACC-GGGCTGATCCCCGACTTAC-G-CATTCTGCCTCTCAGGCCGGTTGAGCA-CC
130 GTAAGGGGGACCAAGTC-GATCCACGACTTACAGAC-TT-TACCTCTCAGGCCGGTTGAG-AGCC
** * *
35675708 CGCACGTTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCACCCAA
191 CGCACGCCCGTTTCACGGGTTGGCTTAGGCATAGGGACTTCATTCCAAGTCTAAGCCCCACCCAA
* * * * * * *
35675773 ACTGAGGGTTGTGGTAGCGGGACCGGTAGCACACAGAGGGGGACCGGGTCGATCCACGGCTTGCA
256 ACCGAGGGTTGTGGCAGCGGGACCGATAGCACACAGAGGGGGACCGAGCCGATCCACGACTTACA
* *
35675838 CATTATGCCTCTTCGGTCAGCTC
321 CATTATGCCTCTCCGGCCAGCTC
* * * * *
35675861 AGTGCCCGCACACTCATTTCGTGGGTTGACTTATACATACGGAGTTCAT-TCCAGTCTAAG
1 AGTGCCCACACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATCTCCAGTCTAAG
35675921 ATCGGACCGG
Statistics
Matches: 333, Mismatches: 63, Indels: 13
0.81 0.15 0.03
Matches are distributed among these distances:
339 1 0.00
340 5 0.02
341 142 0.43
342 185 0.56
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (343 bp):
AGTGCCCACACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATCTCCAGTCTAAGCAAA
CAGAGTTCATTCCCAGTCCAAGATCAGACCGAACCAAGGGTGGCGGCAACAGGATCAACAGCACG
TAAGGGGGACCAAGTCGATCCACGACTTACAGACTTTACCTCTCAGGCCGGTTGAGAGCCCGCAC
GCCCGTTTCACGGGTTGGCTTAGGCATAGGGACTTCATTCCAAGTCTAAGCCCCACCCAAACCGA
GGGTTGTGGCAGCGGGACCGATAGCACACAGAGGGGGACCGAGCCGATCCACGACTTACACATTA
TGCCTCTCCGGCCAGCTC
Found at i:35676081 original size:26 final size:26
Alignment explanation
Indices: 35676052--35676104 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
35676042 GTTCGCTTAG
*
35676052 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
* *
35676078 GCATATAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
35676104 G
1 G
35676105 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:35677316 original size:26 final size:26
Alignment explanation
Indices: 35677286--35677338 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35677276 GTTGACTTAG
35677286 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
35677312 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35677338 G
1 G
35677339 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35677801 original size:158 final size:157
Alignment explanation
Indices: 35677312--35678128 Score: 619
Period size: 158 Copynumber: 5.2 Consensus size: 157
35677302 CCCAGTCTAA
* * * * *
35677312 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGACCGAATCGAGGGTTGTGGCAGTAGGATCGAC
1 GCATAGGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAAGGTTGTGGCAGCAGGATCGAC
* * * * *
35677376 AGCACGCAGGGGGGATCGGGCCGAT-CCTCGGCTTACGCATTCTACCTCTCCGGTCGGTTGAGAG
65 AGCACGCAGGGGGGA-CGGGCTGATCCCT-GGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
*
35677440 CCCGCACGC-CTGTTTCGTAGGTTGGCTTAG
128 CCCGCACGCTC-GTTTCGTGGGTTGGCTTAG
** ** * * * * *
35677470 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TTGAACCGAGGGTTGTGGCAGCGGGACCAAC
1 GCATAGGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAAGGTTGTGGCAGCAGGATCGAC
* * ** * * ** *
35677534 AGCACGCAGAGGGGACTGAATCGATCCC-GGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCGC
65 AGCACGCAGGGGGGACGGGCT-GATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* * * * * *
35677598 CTGTATGCTCATTTCGTGGGTTGACTTAT
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
35677627 GCATATGAAATTCATTCCCA-GTCTAAGATCGGACTGGACCGAAGGTTGCGGCAGCAGGATCGAC
1 GCATAGGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAAGGTTGTGGCAGCAGGATCGAC
* * * *
35677691 AGCACGTAGGGGGGATCGGGCTGATCCCTAGCTTGTGCATTCTGCCTCTACGGTCGGCTGAGCGC
65 AGCACGCAGGGGGGA-CGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* * *
35677756 CCGTACGCCCGTTTTGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
** ** * * * * * *
35677785 GCATAGGGAGTTCATTCCATGTCTAAGCCCCTACCGGACC-AAGGGTTGTAGTACCGGGACCGAT
1 GCATAGGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAA-GGTTGTGGCAGCAGGATCGAC
* * * * * * * * * *
35677849 ATCACGTAGAGAGGGACTGGGCTGATCCC-AGCTTGCCCATTATACCTCTTCGGTCAGCTCAGCG
65 AGCACGCAG-GGGGGAC-GGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
* * * *
35677913 CCCGCACGCTCATTTCATGGGTTGACTTAT
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * *
35677943 GCATACGGAATTCATTCCCA-GTCTAAGATCAGACCAGACCAAAGGTTTTCGGTAGCAGGATTGA
1 GCATAGGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAAGGTTGT-GGCAGCAGGATCGA
* * * ** * *
35678007 CAGCATGCAGGGGGGACCAGGTTGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAACG
64 CAGCACGCAGGGGGGA-CGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
* * * *
35678072 CCCGCACGCTTGTCTCCTGGGTTGGCTTAA
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
35678102 GCAT-GCGGAGTTCATTCCATGTCTAAG
1 GCATAG-GGAGTTCATTCCATGTCTAAG
35678129 TATACGAAGT
Statistics
Matches: 506, Mismatches: 133, Indels: 39
0.75 0.20 0.06
Matches are distributed among these distances:
156 2 0.00
157 120 0.24
158 274 0.54
159 110 0.22
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATAGGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAAGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGACGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:35679250 original size:26 final size:26
Alignment explanation
Indices: 35679219--35679271 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35679209 GTTGACTTAG
*
35679219 GCATACAGATTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
35679245 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
35679271 G
1 G
35679272 ATCGAACAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:35679574 original size:159 final size:158
Alignment explanation
Indices: 35679391--35679746 Score: 376
Period size: 158 Copynumber: 2.2 Consensus size: 158
35679381 CCCATTTCGC
* * * * * * *
35679391 GGGTTGGCTTAGGCTTAGGGAGTTCATTCCATGTCTATGCCCCA-ATCGGATCGAGGGTTGTGGC
1 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCAGATCGGACCAAGGGTTGTGAC
* * * *
35679455 AGCAGGACCGGCAGCACGTCAAGTGGGAC-CGAGCCAATCCCCAACTTGTGCATTATGCCTCTTC
65 AGCAGGACCGACAGCACG-CAAGGGGGACTCG-GCCAATCCCCAACTTGCGCATTATGCCTCTCC
* *
35679519 GGCCGGCTCAGTGCCAGCGCACTCGTTTCAT
128 GGCCGGCTCAGCGCCAGCACACTCGTTTCAT
* * *
35679550 GGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATCAGATCGGACCAAGGGTTGTGAC
1 GGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGATCGGACCAAGGGTTGTGAC
* * * * * * *
35679614 AGCAGGATCGACAGCACGCAGGGGGGACTCGGTCGATCCCCAGCTTGCGTATTCTGCCTCTCCGG
65 AGCAGGACCGACAGCACGCAAGGGGGACTCGGCCAATCCCCAACTTGCGCATTATGCCTCTCCGG
* * * * * * **
35679679 TCGGTTGAGCGCCCGTACGCTCGTTTTGT
130 CCGGCTCAGCGCCAGCACACTCGTTTCAT
35679708 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
35679747 CATATGGAGT
Statistics
Matches: 160, Mismatches: 33, Indels: 9
0.79 0.16 0.04
Matches are distributed among these distances:
157 3 0.02
158 89 0.56
159 65 0.41
160 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGATCGGACCAAGGGTTGTGACA
GCAGGACCGACAGCACGCAAGGGGGACTCGGCCAATCCCCAACTTGCGCATTATGCCTCTCCGGC
CGGCTCAGCGCCAGCACACTCGTTTCAT
Found at i:35679770 original size:26 final size:26
Alignment explanation
Indices: 35679720--35679772 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35679710 GTTGGCTTAG
*
35679720 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
35679746 GCATATGGAGTTCATTCTCA-ATCTAA
1 GCATACGGAGTTCATTC-CATATCTAA
35679772 G
1 G
35679773 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:35681177 original size:26 final size:26
Alignment explanation
Indices: 35681148--35681200 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35681138 ATTAACTTAG
* *
35681148 GCATTCGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
35681174 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35681200 G
1 G
35681201 ATTGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35681598 original size:20 final size:20
Alignment explanation
Indices: 35681573--35681643 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 20
35681563 TATGGCAGCA
*
35681573 GGATCGACAGCACGTAGGAG
1 GGATCGACAGCACGTAGGGG
** *
35681593 GGATCGGTAGCATGTAGGGG
1 GGATCGACAGCACGTAGGGG
* * *
35681613 GGATTGACACCACATAGGGG
1 GGATCGACAGCACGTAGGGG
*
35681633 GGATCGGCAGC
1 GGATCGACAGC
35681644 CGGATCGAGG
Statistics
Matches: 38, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.25, C:0.18, G:0.42, T:0.14
Consensus pattern (20 bp):
GGATCGACAGCACGTAGGGG
Found at i:35682279 original size:159 final size:159
Alignment explanation
Indices: 35682000--35682287 Score: 443
Period size: 159 Copynumber: 1.8 Consensus size: 159
35681990 GGGGAACGGG
* *
35682000 TCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCAGACTGAGCACCCGCACGCCCATTTCATGGG
1 TCGATCCCCAGCTTGCGCATTATACCTCTCCGGCAGACTGAGCACCCGCACGCCCATTTCATGGG
* * **
35682065 TTGGCTTAGGCATAGGGAATTCATTCCATGTCTAAGCCCCAGTAGGAGCGGGGGTTGTAGCAGCG
66 TTGGCTTAGGCATAGCGAATTCATTCCATGTCTAAGCCCCAGTAGGACCAAGGGTTGTAGCAGCG
35682130 GGTCCGACAGCACGTAGAGGGGGACCGAT
131 GGTCCGACAGCACGTAGAGGGGGACCGAT
* * * * *
35682159 TCGATCCCCAGCTTGCGCATTATGCCTCTCTGGCCGACTGAGCACCCGCACGCTCATTTCATGGT
1 TCGATCCCCAGCTTGCGCATTATACCTCTCCGGCAGACTGAGCACCCGCACGCCCATTTCATGGG
* *
35682224 TTGGCTTAGGCATA-CGAAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTTGTGGCAGC
66 TTGGCTTAGGCATAGCGAA-TTCATTCCATGTCTAAGCCCCAGTAGGACCAAGGGTTGTAGCAGC
35682288 AGGACTGGTA
Statistics
Matches: 115, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
158 3 0.03
159 112 0.97
ACGTcount: A:0.19, C:0.30, G:0.28, T:0.23
Consensus pattern (159 bp):
TCGATCCCCAGCTTGCGCATTATACCTCTCCGGCAGACTGAGCACCCGCACGCCCATTTCATGGG
TTGGCTTAGGCATAGCGAATTCATTCCATGTCTAAGCCCCAGTAGGACCAAGGGTTGTAGCAGCG
GGTCCGACAGCACGTAGAGGGGGACCGAT
Found at i:35682446 original size:26 final size:26
Alignment explanation
Indices: 35682417--35682469 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35682407 GTTGAATTAG
*
35682417 GCATACGGAGTTCATCCCCCATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
35682443 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
35682469 G
1 G
35682470 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:35684185 original size:24 final size:24
Alignment explanation
Indices: 35684143--35684194 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
35684133 CTTAGGCATA
35684143 ACGGAGTCATTCCATGTCTAAGCT
1 ACGGAGTCATTCCATGTCTAAGCT
*
35684167 ACGGAGTTCATTCTA-GTCTAAGCT
1 ACGGAG-TCATTCCATGTCTAAGCT
35684191 -CGGA
1 ACGGA
35684195 CGGACCGAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 4 0.15
24 15 0.58
25 7 0.27
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (24 bp):
ACGGAGTCATTCCATGTCTAAGCT
Found at i:35684860 original size:157 final size:157
Alignment explanation
Indices: 35684375--35684875 Score: 497
Period size: 159 Copynumber: 3.2 Consensus size: 157
35684365 CCCAGTCTAA
* * * * *
35684375 GCATACGGAGTTCATTCTGA-GTCTAAGATCGGACTAGACTGAGGGTTACGGTAGCAGGATCGAT
1 GCATACGGAGTTCATTC-CATGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCAGGATCGAT
* * * * *
35684439 AGCACGTAAGGGGGACCAGGCCGATCTCTGCCTTAAGCATTCTACCTCTCCGATCGGCTGAGCAC
65 AGCACGTAAGGGGGA-CAGGTCGATCCCTGGCTTAAGCATTCTACCTCTTCGATCGGCTGAGCGC
* * *
35684504 TCGTACGCCCGTTTCATGGGTTGGCTTAG
129 CCGAACGCTCGTTTCATGGGTTGGCTTAG
* ** * * *
35684533 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTATGGCAGCAGGATCGGT
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACTGGACCGAGGGTTACGGCAGCAGGATCGAT
* * * * * ** * * * * * *
35684597 AGAACATAGAGGGGGACCGGTCTAATCCCTAGCTTGCGCATTATGCCTCTTCGGTCAGCTCAACG
65 AGCACGTA-AGGGGGACAGGTC-GATCCCTGGCTTAAGCATTCTACCTCTTCGATCGGCTGAGCG
* *
35684662 CCCGAACGGTCGTTTCATGGGTTGACTTAG
128 CCCGAACGCTCGTTTCATGGGTTGGCTTAG
* *
35684692 GCATACGGAGTTCATTCC-TAGTCTAAGATCAGATTGGACCGAGGGTTGCGGCAGCAGGATCGAT
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCAGGATCGAT
* * * * * *
35684756 AGCACGT-AGGGGGATCGGGTCGGTCCCCGGCTTATGCATTCTACCTTTTCGATCGGCTGAGTGC
65 AGCACGTAAGGGGGA-CAGGTCGATCCCTGGCTTAAGCATTCTACCTCTTCGATCGGCTGAGCGC
* * *
35684820 CCGCACGCTCGTTTCGTGGGTTGGTTTAG
129 CCGAACGCTCGTTTCATGGGTTGGCTTAG
*
35684849 GCATACCGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
35684876 CCAACAGAGT
Statistics
Matches: 270, Mismatches: 65, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
157 85 0.31
158 68 0.25
159 117 0.43
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCAGGATCGATA
GCACGTAAGGGGGACAGGTCGATCCCTGGCTTAAGCATTCTACCTCTTCGATCGGCTGAGCGCCC
GAACGCTCGTTTCATGGGTTGGCTTAG
Found at i:35685074 original size:26 final size:26
Alignment explanation
Indices: 35685045--35685097 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35685035 GTTGACTTAG
35685045 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
35685071 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
35685097 G
1 G
35685098 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:35685098 original size:196 final size:195
Alignment explanation
Indices: 35684743--35685129 Score: 474
Period size: 196 Copynumber: 2.0 Consensus size: 195
35684733 AGGGTTGCGG
* * * ** * *
35684743 CAGCAGGATCGATAGCACGTAGGGGGATCGGGTCGGTCCCCGGCTTATGCATTCTACCTTTTCGA
1 CAGCAGGATCGATAGCACGCAGGGGGATCGAGCCAATCCCCAGCTTATGCATTCTACCTTCTCGA
* * ** * *
35684808 TCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGTTTAGGCATACCGAGTTCATTCCATGTCT
66 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACCGAGTTCATCCCATATCT
* * * * *
35684873 AAGCCAACAGAGTTCATTCCTAGTCTAAGATCGGACCGGACCAAGGTTTGCTACAGCAGGACCAA
131 AAGCCAACAGAGTTCATTCCCAATCTAAGATCGAACCGGACCAAGGGTTGCGACAGCAGGACCAA
* * *
35684938 CAGCAGGATCGGTAGCACGCAGGGGGGATCGAGCCAATCCCCAGCTTGTGTATTCTACC-TCTCT
1 CAGCAGGATCGATAGCACGCA-GGGGGATCGAGCCAATCCCCAGCTTATGCATTCTACCTTCTC-
* * * *
35685002 GACCGGTTGAGCGCTCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-A
64 GACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACCGAGTTCAT-CCCATA
* *
35685066 TCTAAG-CATACGGAGTTCATTCCCAATCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGA
128 TCTAAGCCA-ACAGAGTTCATTCCCAATCTAAGATCGAACCGGACCAAGGGTTGCGACAGCAGGA
35685130 TCGGCAGCAC
Statistics
Matches: 161, Mismatches: 27, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
195 24 0.15
196 134 0.83
197 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (195 bp):
CAGCAGGATCGATAGCACGCAGGGGGATCGAGCCAATCCCCAGCTTATGCATTCTACCTTCTCGA
CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACCGAGTTCATCCCATATCT
AAGCCAACAGAGTTCATTCCCAATCTAAGATCGAACCGGACCAAGGGTTGCGACAGCAGGACCAA
Found at i:35685269 original size:197 final size:197
Alignment explanation
Indices: 35685002--35685385 Score: 588
Period size: 197 Copynumber: 1.9 Consensus size: 197
35684992 CTACCTCTCT
* * * * *
35685002 GACCGGTTGAGCGCTCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAAT
1 GACCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAAT
* * *
35685067 CTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGATC
66 CTAAGCATACGGAATTCATTCCCAATCGAAGATCGAACCGGACCGACGGTTGCGACAGCAGGATC
* *
35685132 GGCAGCACGCAGGGGGGACCAGACCGATCCCTGACTTGCGCATTCTGCCTCTCCGATTGGCTTCT
131 GGCAGCACGCAGGGGGGACCAGAACGATCCCTGACTTACGCATTCTGCCTCTCCGATTGGCTTCT
35685197 TC
196 TC
* *
35685199 GACCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGT
1 GACCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAAT
* * *
35685264 CTAAGCATACGGAATTCATTCCCAGTCGAAGATCGAACTGGACCGACGGTTGCGGCAGCAGGATC
66 CTAAGCATACGGAATTCATTCCCAATCGAAGATCGAACCGGACCGACGGTTGCGACAGCAGGATC
* * ** *
35685329 GGCAGCATGCAGTGGGGACTGGAACGATCCCTGACTTACGCATTCTGGCTCTCCGAT
131 GGCAGCACGCAGGGGGGACCAGAACGATCCCTGACTTACGCATTCTGCCTCTCCGAT
35685386 CGGTTGAGCG
Statistics
Matches: 167, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
197 167 1.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.22
Consensus pattern (197 bp):
GACCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAAT
CTAAGCATACGGAATTCATTCCCAATCGAAGATCGAACCGGACCGACGGTTGCGACAGCAGGATC
GGCAGCACGCAGGGGGGACCAGAACGATCCCTGACTTACGCATTCTGCCTCTCCGATTGGCTTCT
TC
Found at i:35686730 original size:26 final size:26
Alignment explanation
Indices: 35686680--35686732 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35686670 GTTGGCTTAG
*
35686680 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
35686706 GCATGCGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
35686732 G
1 G
35686733 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:35686857 original size:184 final size:184
Alignment explanation
Indices: 35686530--35686891 Score: 474
Period size: 184 Copynumber: 2.0 Consensus size: 184
35686520 AGGCATACGA
* * * *
35686530 AGTTCATTCCCAGTCTAAGAGCAAACCAGACCGAGGGTTGTGATAGTAGGATTGACAACACGCAG
1 AGTTCATTCCCAATCTAAGAGCAAACCAGACCGAGGGTTGCGACAGTAGGATCGACAACACGCAG
* * *
35686595 GGGGGACTGGGCCAATCCCTGGATTACACATTCTTCCTCTCCAATTGGCTGAGCGCCCACACACT
66 GGGGGACTGGGCCAATCCCCGGATTACACATTCTGCCTCTCCAATCGGCTGAGCGCCCACACACT
*
35686660 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATGCGG
131 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGCATGCGG
* * ** * * * *
35686714 AGTTCATTCCCAATCTAAGATCAGACTGGATCGAGGGTTGCGGCAGTAGGATCGACAGCACGTAG
1 AGTTCATTCCCAATCTAAGAGCAAACCAGACCGAGGGTTGCGACAGTAGGATCGACAACACGCAG
* * * * * * * *
35686779 GGGGGA-TCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGC
66 GGGGGACT-GGGCCAATCCCCGGATTACACATTCTGCCTCTCCAATCGGCTGAGCGCCCACACAC
* *
35686843 TCTTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGC
130 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGC
35686892 CCCAGCCAAA
Statistics
Matches: 151, Mismatches: 26, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
183 1 0.01
184 150 0.99
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (184 bp):
AGTTCATTCCCAATCTAAGAGCAAACCAGACCGAGGGTTGCGACAGTAGGATCGACAACACGCAG
GGGGGACTGGGCCAATCCCCGGATTACACATTCTGCCTCTCCAATCGGCTGAGCGCCCACACACT
CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGCATGCGG
Found at i:35688107 original size:26 final size:26
Alignment explanation
Indices: 35688078--35688130 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35688068 GTTGACTTAG
35688078 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
35688104 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
35688130 G
1 G
35688131 ATCAAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:35688508 original size:26 final size:26
Alignment explanation
Indices: 35688461--35688510 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
35688451 GACTTAGGCA
**
35688461 TACGGAGTTCATCCCCGGTCTAAGCT
1 TACGGAGTTCATCCCCAATCTAAGCT
* *
35688487 TACGGAGTTCATTCCTAATCTAAG
1 TACGGAGTTCATCCCCAATCTAAG
35688511 ATGGGACTGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAATCTAAGCT
Found at i:35689657 original size:26 final size:26
Alignment explanation
Indices: 35689621--35689673 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35689611 GTTGACTTAG
35689621 GCATACGGAGTTCATCCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* *
35689647 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
35689673 G
1 G
35689674 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:35690113 original size:157 final size:157
Alignment explanation
Indices: 35689647--35690138 Score: 466
Period size: 159 Copynumber: 3.1 Consensus size: 157
35689637 CCCAGCCTAA
* *
35689647 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGATTGAGGGTT--ACAGTAGCAGGATCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGATCGAGGGTTGGACAGTA--A-GATCG
* * * * * * * *
35689709 ACAGCATGCAGGGGGGACCGAGCTGATCCTCGACTTGCGCATTCTGT-CTCTCCGGCCGGCTGAG
62 ACAGCACGTAGAGGGGACTGGGCTGATCCTCGGCTTGCGCATTCT-TCCTCTCCGACCGGTTGAG
*
35689773 CGCCCGCACACCCATTTCGTGGGTTGGCTTAG
126 CGCCCGCACGCCCATTTCGTGGGTTGGCTTAG
* ** * * ***
35689805 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCAGATCGAGGGTTGTGGCAGCGGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGATCGAGGGTTG-GACAGTAAGATC-G
* * * * * *
35689867 GCAGCACGTAGAGGAGGACCT-GGCCGATCCTCGGCTTGGGCATTATGCCTCTTCGACCGGCTT-
62 ACAGCACGTAGAGG-GGA-CTGGGCTGATCCTCGGCTTGCGCATTCTTCCTCTCCGACCGG-TTG
* * * *
35689930 AGCACCCGCACGCTCATTTTGTGGGTTGACTTAG
124 AGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAG
* *
35689964 GCTTACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGA-GGTTGCGACAGTAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTG-GACAGTAAGATCGACA
* *
35690028 GCACGTAGAGGGGATTGGGCTGATCC-CTGGCTTGCGCATTCTTCCTCTCCGACCGGTTGAACGC
65 GCACGTAGAGGGGACTGGGCTGATCCTC-GGCTTGCGCATTCTTCCTCTCCGACCGGTTGAGCGC
*
35690092 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCCCATTTCGTGGGTTGGCTTAG
*
35690121 GCATACAGAGTTCATTCC
1 GCATACGGAGTTCATTCC
35690139 ATATCTAAGC
Statistics
Matches: 262, Mismatches: 55, Indels: 35
0.74 0.16 0.10
Matches are distributed among these distances:
156 4 0.02
157 83 0.32
158 73 0.28
159 93 0.35
160 6 0.02
161 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGGACAGTAAGATCGACAG
CACGTAGAGGGGACTGGGCTGATCCTCGGCTTGCGCATTCTTCCTCTCCGACCGGTTGAGCGCCC
GCACGCCCATTTCGTGGGTTGGCTTAG
Found at i:35690307 original size:185 final size:183
Alignment explanation
Indices: 35689967--35690714 Score: 446
Period size: 184 Copynumber: 4.1 Consensus size: 183
35689957 GACTTAGGCT
* *
35689967 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGTTGCGACAGTAAGATCGATAGCAC
1 TACGGAGTTCATTCCCAGTATAAGATCAGACCAGATCGAGGTTGCGACAGTAAGATCGACAGCAC
* ** * * * * *
35690032 GTAGAGGGGATTGGGCTGATCCCTGGCTTGCGCATTCTTCCTCTCCGACCGGTTGAACGCCCGCA
66 ATAGAGGGGACCGAGCCGATCCCTGGCTTGCGAATTCTGCCTCTCCGACCGGCTGAACGCCCGCA
* * *
35690097 CGCCCGTTTCGTGGGTTGGCTTAGGCATAC-AGAGTTCATTCCATATCTAAGCA
131 CGCCCGTTTCATGGGTTGGCTTAGGCAAACGA-AGTTCACTCCATATCTAAGCA
* * * *
35690150 TACGGAGTTCATTCCCAGTATATGATCAGACCAGATCGAGGGTTGC-AGCAGTAGGATCGGCAGT
1 TACGGAGTTCATTCCCAGTATAAGATCAGACCAGATCGA-GGTTGCGA-CAGTAAGATCGACAGC
* * *** *
35690214 ACATAGGAGGGGACCGAGCCGATCCTTGGCTTGTGAATTCTGCCTCTCCGGTTGGCTGAGCGCCC
64 ACATA-GAGGGGACCGAGCCGATCCCTGGCTTGCGAATTCTGCCTCTCCGACCGGCTGAACGCCC
* ** *
35690279 TCACGCTTGTTTCATGGGTTGGCTTAGGCAAACGAAGTTCACTCCATGTCT-A--A
128 GCACGCCCGTTTCATGGGTTGGCTTAGGCAAACGAAGTTCACTCCATATCTAAGCA
* ** * * ** * * **
35690332 TTCCCAGTTGGATT--GAGGT-TGTGGT-AG--CAGGA-CCA----GC-A-A-TGGGATCGACAG
1 TACGGAGTT-CATTCCCA-GTATAAGATCAGACCA-GATCGAGGTTGCGACAGTAAGATCGACAG
* * * * * * * * * *
35690383 CATGCAGAG-GGGGACCGGGCTGAT-CTTCGGCTTGCGCATTATGCCTCTCCGATCGGTTGAGCA
63 CA--CATAGAGGGGACCGAGCCGATCCCT-GGCTTGCGAATTCTGCCTCTCCGACCGGCTGAACG
* * * * * * * * *
35690446 CCCGCACGCTCTTTTCCTAGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCA
125 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCAAACGAAGTTCA-CTCCATATCTAAGCA
* * * * * **
35690505 TATGGAGTTCATTCCCAGTCTAAGATCAGA-CTGAACCGAGGGTTGC-AGCAGTAGGATCGGTAG
1 TACGGAGTTCATTCCCAGTATAAGATCAGACCAG-ATCGA-GGTTGCGA-CAGTAAGATCGACAG
** * * * * * * * *
35690568 CACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGGCC
63 CACATAGAGGGGACCGAGCCGATCCCTGGCTTGCGAATTCTGCCTCTCCGACCGGCTGAACGCCC
** * * * * * *
35690633 GCACGCCCGTTTTGTGGGTTGGCTTAGGCAGAGGGAGTTCATTCCATGTTTAAGCA
128 GCACGCCCGTTTCATGGGTTGGCTTAGGCAAACGAAGTTCACTCCATATCTAAGCA
* *
35690689 TACAGAGTTCATTCCCAGTCTAAGAT
1 TACGGAGTTCATTCCCAGTATAAGAT
35690715 TTTGAGCCAG
Statistics
Matches: 437, Mismatches: 96, Indels: 63
0.73 0.16 0.11
Matches are distributed among these distances:
169 3 0.01
170 92 0.21
171 7 0.02
172 6 0.01
173 11 0.03
174 4 0.01
175 3 0.01
176 2 0.00
177 2 0.00
178 4 0.01
179 2 0.00
180 2 0.00
181 5 0.01
182 12 0.03
183 47 0.11
184 133 0.30
185 101 0.23
186 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (183 bp):
TACGGAGTTCATTCCCAGTATAAGATCAGACCAGATCGAGGTTGCGACAGTAAGATCGACAGCAC
ATAGAGGGGACCGAGCCGATCCCTGGCTTGCGAATTCTGCCTCTCCGACCGGCTGAACGCCCGCA
CGCCCGTTTCATGGGTTGGCTTAGGCAAACGAAGTTCACTCCATATCTAAGCA
Found at i:35690512 original size:26 final size:26
Alignment explanation
Indices: 35690476--35690528 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35690466 GTTGACTTAG
35690476 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
35690502 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35690528 G
1 G
35690529 ATCAGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35691616 original size:158 final size:158
Alignment explanation
Indices: 35691312--35691877 Score: 514
Period size: 158 Copynumber: 3.6 Consensus size: 158
35691302 ACTATCTGTT
* * * * * *
35691312 CGATCCTCAGCTTACACATCCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
1 CGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
* ** * * * * *
35691377 TGACTTAGGCATATGGAGTTCATTCCCAATCTAAG-ATCGGATCAAACCAAGGGTTGTGGCAGCA
66 TGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCCCCAG-CCGAATCGAGGGTTGTGGCAGCA
* * * *
35691441 GGATCGGCAGCACGCAGAGGGGACCGGGC
130 GGATCGACAGAATGCAGAGGGGACTGGGC
* * * * *
35691470 CGATCCCTAGCTTGCGCATTCTGCTTCTCCGATCGGCTGAGCGCCCGCTCGCCCATTTCATGGGT
1 CGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
* * * *
35691535 TGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCGAATCGAGGGTTGTGGCAGCG
66 TGACTTAGGCATACGGAGTTCATTCCCA-ATCTAAGCCCCAGCCGAATCGAGGGTTGTGGCAGCA
*
35691599 GGACCGACAGAATGCAGAGGGAGACTGGGC
130 GGATCGACAGAATGCAGAGGG-GACTGGGC
* * * * * * ** * *
35691629 CGATCCCCGGCTTGCGCATTATGCCTCTTCGA-CGGCTCAACGCCTGCACGCTTGTTTTGTGAGT
1 CGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
* * * ** * * ** * *
35691693 TAACTTATGCATACGGAGTTCATTCCCAATCTAAGATCGGATCAG-ATCGAGGGTTGCAGTAGTA
66 TGACTTAGGCATACGGAGTTCATTCCCAATCTAAG-CCCCAGCCGAATCGAGGGTTGTGGCAGCA
* *
35691757 GGATCAACAGCACAT--AGAGGGGGACTGGGT
130 GGATCGACAG-A-ATGCAGA-GGGGACTGGGC
* * * **
35691787 CGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGTTAAGCGCCCGCACGCTTGTTTCGTGGGT
1 CGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
*
35691852 TGGCTTAGGCATACGGAGTTCATTCC
66 TGACTTAGGCATACGGAGTTCATTCC
35691878 ATGTCTAAGC
Statistics
Matches: 327, Mismatches: 72, Indels: 17
0.79 0.17 0.04
Matches are distributed among these distances:
157 3 0.01
158 226 0.69
159 96 0.29
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
CGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCCCCAGCCGAATCGAGGGTTGTGGCAGCAG
GATCGACAGAATGCAGAGGGGACTGGGC
Found at i:35692607 original size:26 final size:26
Alignment explanation
Indices: 35692571--35692623 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35692561 GTTGGCTTAG
35692571 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
35692597 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35692623 G
1 G
35692624 ATTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35693528 original size:158 final size:158
Alignment explanation
Indices: 35693263--35693803 Score: 475
Period size: 158 Copynumber: 3.4 Consensus size: 158
35693253 CTCTTTGGTC
* * * * * * *
35693263 GGCTGAGCGCCCGCATGCTCGTTTTGTGGGTTGACTTAGGCATACAGACTTCATTCCCA-GTCTA
1 GGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTA
* * * * * ** *
35693327 AGATCGGATC-AGACTGAGGGTTGTGGCAGTAGGATCGGTAGCACGCAGGGGGGACCGGGCCGAT
65 AGACCAGACCGA-ACCGAGGGTTGTCGCAGTAGGATCGACAGCACGCAGGGAGGACCGGGCCGAT
*
35693391 CCCCGGCTTACGCATTCTGCCTCTCCGACT
129 CCCCGGCTTACGCATTATGCCTCTCCGACT
* * ** * * *
35693421 GGCTGAGCGCCCGTTCGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
1 GGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * *
35693486 GCCCCAG-CCGAATCGAGGGTTGTCGCAGTGGGACCGACAGCACGCAGAGGAGGATCGGGCCGAT
66 G-ACCAGACCGAACCGAGGGTTGTCGCAGTAGGATCGACAGCACGCAG-GGAGGACCGGGCCGAT
* ** * *
35693550 CCTCGGCTTGTGCATTATGCCTCTTCG-GT
129 CCCCGGCTTACGCATTATGCCTCTCCGACT
* * * * *
35693579 CGGCTCAGCACCCGCACGCTCGTTTTGTGAGTTGACTTATGCATACGGAGTTCATTCC-TAGTCT
1 -GGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCT
*** ** * * * * * * *
35693643 AAGATTGGATTGAACCGAGGGTTG-CAACAGCAGGATCAACAGCACGTAGGGTGGACCAGACCGA
64 AAGACCAGACCGAACCGAGGGTTGTC-GCAGTAGGATCGACAGCACGCAGGGAGGACCGGGCCGA
* *
35693707 TCCCCTGC-TAGCGCATTTTGCCTCTCCGACT
128 TCCCCGGCTTA-CGCATTATGCCTCTCCGACT
* *
35693738 GGATAAGCACCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
1 GGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
35693803 G
66 G
35693804 TATACGAAGT
Statistics
Matches: 301, Mismatches: 71, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
157 4 0.01
158 174 0.58
159 123 0.41
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GACCAGACCGAACCGAGGGTTGTCGCAGTAGGATCGACAGCACGCAGGGAGGACCGGGCCGATCC
CCGGCTTACGCATTATGCCTCTCCGACT
Found at i:35694525 original size:26 final size:26
Alignment explanation
Indices: 35694489--35694541 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35694479 GTTGGCTTAG
35694489 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
35694515 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35694541 G
1 G
35694542 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35696229 original size:26 final size:26
Alignment explanation
Indices: 35696199--35696249 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
35696189 TGGCATAGGG
*
35696199 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGAAGTTCATTCCCA-GTCTAAGC
35696225 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
35696250 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:35696884 original size:26 final size:26
Alignment explanation
Indices: 35696847--35696899 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35696837 GTTGACTTCG
*
35696847 GCATACGTAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
35696873 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35696899 G
1 G
35696900 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35697231 original size:25 final size:26
Alignment explanation
Indices: 35697202--35697253 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
35697192 GTTGACTTAG
35697202 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35697227 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35697253 G
1 G
35697254 ATCAAATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35697518 original size:26 final size:26
Alignment explanation
Indices: 35697489--35697541 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35697479 GTTGACTTAG
* *
35697489 GCATACGGAGTTCATCCCCAGTGTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
35697515 GCATACATAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
35697541 G
1 G
35697542 ATCGAACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:35697998 original size:26 final size:26
Alignment explanation
Indices: 35697962--35698014 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35697952 GTTGGCTTTG
35697962 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
35697988 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35698014 G
1 G
35698015 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35698373 original size:25 final size:25
Alignment explanation
Indices: 35698339--35698389 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
35698329 GTTGACTTAG
*
35698339 GCATATGGAGTTCATCCCAGTCTAA
1 GCATAGGGAGTTCATCCCAGTCTAA
*
35698364 GCATAGGGAGTTCATTCCAGTCTAA
1 GCATAGGGAGTTCATCCCAGTCTAA
35698389 G
1 G
35698390 ATCGAATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (25 bp):
GCATAGGGAGTTCATCCCAGTCTAA
Found at i:35698831 original size:26 final size:26
Alignment explanation
Indices: 35698801--35698871 Score: 133
Period size: 26 Copynumber: 2.7 Consensus size: 26
35698791 GTTGCCTTAG
35698801 GCATATGGAGTTCATTCCATGTATAA
1 GCATATGGAGTTCATTCCATGTATAA
35698827 GCATATGGAGTTCATTCCATGTATAA
1 GCATATGGAGTTCATTCCATGTATAA
*
35698853 GCATACGGAGTTCATTCCA
1 GCATATGGAGTTCATTCCA
35698872 GTCTAAGATT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCATGTATAA
Found at i:35699596 original size:26 final size:26
Alignment explanation
Indices: 35699547--35699597 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
35699537 GTTGGCTTAG
**
35699547 GCATACGGAGTTCATTCCTTGTCTAT
1 GCATACGGAGTTCATTCCCAGTCTAT
*
35699573 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
35699598 AGATTTTGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.35
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAT
Found at i:35700253 original size:722 final size:721
Alignment explanation
Indices: 35698827--35700323 Score: 2338
Period size: 722 Copynumber: 2.1 Consensus size: 721
35698817 CCATGTATAA
* * *
35698827 GCATATGGAGTTCATTCCATGTATAAGCATACGGAGTTCATT-CCAGTCTAAGATTTTGAGCCAT
1 GCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTTTGAGCCAT
* *
35698891 CATGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTTTCGCTCGGGGCACCATCGTCG
66 CATGCACATGCTGGGCTCAGGCATGTGCTGGTGTCACATTTTTTTCGCTCGGGGCACCATCGTCG
* *
35698956 GAGCATCGCCGGAGAGCCTAACCGGCGGCATTAGGGGTTCCGACGATTGGGGGGGCCGGGGGGGT
131 GAGCATCGCCAGAGAGCCTAACCGACGGCATTAGGGGTTCCGACGATTGGGGGGGCCGGGGGGGT
* *
35699021 GCCCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
196 GCACCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
35699086 ACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGGTTTTATAGGTTTGCTGCCAGTAGCCAT
261 ACCTTGAGAAATCACACCCCCTTAAAGAGCATTTGAGGTTTTATAGGTTTGCTGCCAGTAGCCAT
*
35699151 TAAAGCGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCCAGTTTTT
326 TAAAGCGTCTGAAATGGGGACACTTTTTTCAAACGGACACAAAATCTTCTCCACTTCCAGTTTTT
* * *
35699216 AGCTTAGTTTTTTTGTACATGCCAAAAAAAATACAAGGATCACCTCTACCAAATTTGGTGACAAA
391 AGCTGAATTTTTTTGTACATGCCAAAAAAAATACAAGGATCACCTCTACCAAATTTCGTGACAAA
* * *
35699281 AATCCTTCTAAAAAAATTTTAGAAAATCTCGAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAG
456 AATCCTTCTAAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAG
*
35699346 AAAACGGGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAA
521 AAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAA
35699411 GCCACAAAAATGGCATTGGCACATGGCAGAATATAAGATGTGCTTGAACCCACCTACCACCCGTT
586 GCCACAAAAATGGCATTGGCACATGGCAGAATATAAGATGTGCTTGAACCCACCTACCACCCGTT
*
35699476 TCGATCCCGGCTTGCGCATCCTGCCTCTCCGGCCGGCTGAGCCCCGCACCTCGTTTCGTGGGTTG
651 TCGATCCCGGCTTACGCATCCTGCCTCTCCGGCCGGCTGAGCCCCGCACCTCGTTTCGTGGGTTG
*
35699541 GCTTAG
716 ACTTAG
* *
35699547 GCATACGGAGTTCATTCCTTGTCTATGCATATGGAGTTCATTCCCAGTCTAAGATTTTGAGCCA-
1 GCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTTTGAGCCAT
*
35699611 CGGTGCACATGCTAGGGCTCAGGCATGTGCTGGTGTCACATTTTTTTCGCTC-GGGCACCAATCG
66 C-ATGCACATGCT-GGGCTCAGGCATGTGCTGGTGTCACATTTTTTTCGCTCGGGGCACC-ATCG
* *
35699675 TCGGAGCATCGTCAGAGAGCCTAACCGACGGCAATTGGGGGTTCCGACGATT-GGGGGGCCGGGG
128 TCGGAGCATCGCCAGAGAGCCTAACCGACGGC-ATTAGGGGTTCCGACGATTGGGGGGGCCGGGG
* *
35699739 GAGTGTG-AGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCT
192 G-G-GTGCACCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
** **
35699803 TGTCAAACCTTGAGAAATTGCACCCCCTTAAAGAGCATTTGAGGTTTTATAGGTTTGCTGCCAGT
255 CATCAAACCTTGAGAAATCACACCCCCTTAAAGAGCATTTGAGGTTTTATAGGTTTGCTGCCAGT
* * **
35699868 AGCCGTTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAACGGACACAAAATCTTCTCCACTTTGA
320 AGCCATTAAAGCGTCTGAAATGGGGACACTTTTTTCAAACGGACACAAAATCTTCTCCACTTCCA
* *
35699932 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTACCAAATTTTCG
385 GTTTTTAGCTGAATTTTTTTGTACATGCCAAAAAAAATACAAGGATCACCTCTACCAAA-TTTCG
* * *
35699997 -GACAAAACTCTTTCTAAAATAATTTTAAAAAATC-CTGAACCACAAAAAGTTTCAAAAATCGTG
449 TGACAAAAATCCTTCTAAAAAAATTTTAAAAAATCTC-GAACCACAAAAAGTTTCAAAAATCGTG
35700060 AAAAATAGAAAAC-GGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGA
513 AAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGA
*
35700124 ATTTACAAGCCATAAAAATGGCATT-GC-CATGGCAGAAATATAAAGATGTGCTTGAACCCACCT
578 ATTTACAAGCCACAAAAATGGCATTGGCACATGGCAG-AATAT-AAGATGTGCTTGAACCCACCT
* * * *
35700187 ACCACCCG-TTCGATCCCCGGCTTACGCATCCTGCCTCTCTGGTC-GTTGAGTGCCCGCACGCTC
641 ACCACCCGTTTCGAT-CCCGGCTTACGCATCCTGCCTCTCCGGCCGGCTGAG-CCCCGCAC-CTC
*
35700250 GTTTTGTGGGTTGACTTAG
703 GTTTCGTGGGTTGACTTAG
* *
35700269 GCATACGAAGTTCATCCCCA-GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
1 GCATACGGAGTTCAT-TCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
35700324 CAGACCAGAC
Statistics
Matches: 712, Mismatches: 50, Indels: 28
0.90 0.06 0.04
Matches are distributed among these distances:
719 8 0.01
720 56 0.08
721 175 0.25
722 305 0.43
723 165 0.23
724 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (721 bp):
GCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTTTGAGCCAT
CATGCACATGCTGGGCTCAGGCATGTGCTGGTGTCACATTTTTTTCGCTCGGGGCACCATCGTCG
GAGCATCGCCAGAGAGCCTAACCGACGGCATTAGGGGTTCCGACGATTGGGGGGGCCGGGGGGGT
GCACCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTTGAGAAATCACACCCCCTTAAAGAGCATTTGAGGTTTTATAGGTTTGCTGCCAGTAGCCAT
TAAAGCGTCTGAAATGGGGACACTTTTTTCAAACGGACACAAAATCTTCTCCACTTCCAGTTTTT
AGCTGAATTTTTTTGTACATGCCAAAAAAAATACAAGGATCACCTCTACCAAATTTCGTGACAAA
AATCCTTCTAAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAG
AAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAA
GCCACAAAAATGGCATTGGCACATGGCAGAATATAAGATGTGCTTGAACCCACCTACCACCCGTT
TCGATCCCGGCTTACGCATCCTGCCTCTCCGGCCGGCTGAGCCCCGCACCTCGTTTCGTGGGTTG
ACTTAG
Found at i:35700760 original size:158 final size:156
Alignment explanation
Indices: 35700295--35700796 Score: 517
Period size: 158 Copynumber: 3.2 Consensus size: 156
35700285 CCCAGTCTAA
*
35700295 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGAT-GG-
* * * * * * *
35700359 AAGCACGCAAGGGGAACGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAGCTGGCTGAGCGC
63 AAGAACACAGGGGGGACGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGTGC
** *
35700424 CTGTGCGCTCGTTTCGTGGGTTGGCATAG
128 CTGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * * *
35700453 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGACTGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGCGGTAGCAGGA-TGGA
* * * * * * * *
35700517 AGTACACAGAGGGGGCCTGGGCCGATCCTCGGCTTGTGCATTATGCCTCTCC-GATCGGTTCAGT
64 AGAACACAG-GGGGGAC-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAG-CCGGCTGAGT
* * **
35700581 GCCTGCACGCTCATTTTGTGGGTTAACTTAG
126 GCCTGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** *
35700612 GCATACAGAGTTCATTCCCA-GTCTAAGATTGGACCAGATCGAGGGTTGCGGTAGCAGGATGGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATGGA-
* * *
35700676 AGAACATAGGGGGGACGAGGCCAATCCCCGGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGTGC
64 AGAACACAGGGGGGACG-GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGTGC
*
35700741 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CTGCACGCTCGTTTCGTGGGTTGGCTTAG
35700770 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
35700797 CATGCAGAGT
Statistics
Matches: 272, Mismatches: 60, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 13 0.05
158 144 0.53
159 112 0.41
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATGGAAG
AACACAGGGGGGACGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGTGCCTG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:35701987 original size:26 final size:26
Alignment explanation
Indices: 35701935--35701987 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35701925 GTTGACTTAG
*
35701935 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
35701961 GCATATGGAGTTCATTCCCAATTTAA
1 GCATACGGAGTTCATCCCCAATCTAA
35701987 G
1 G
35701988 ATCCGATCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:35702251 original size:159 final size:158
Alignment explanation
Indices: 35701997--35702464 Score: 465
Period size: 159 Copynumber: 3.0 Consensus size: 158
35701987 GATCCGATCG
* ** * * * * *
35701997 AACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGA-GGGGACCGGGCCGATCCCCGGCTTGC
1 AACCGAGGGTTGTGGCAATAGGACCGACAACACGTAAAGGGGGACCGGGCTGATCCCCGGCTTGC
** * * * * *
35702061 GCATTCTTTCTCTCCGGTCGGCGGAGTGCCCGTACACCCGTTTCGTGGGTTGGCTTAGGCATAGG
66 GCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACG
35702126 GAGTTCATTCCACGTCTAAGCCCCAGCC
131 GAGTTCATTCCACGTCTAAGCCCCAGCC
* *
35702154 AGACCGAGGGTTGTGGCAATGGGACCGGCAACACGTAAAGGGGGACCGGGCTGATCCCCGGCTTG
1 A-ACCGAGGGTTGTGGCAATAGGACCGACAACACGTAAAGGGGGACCGGGCTGATCCCCGGCTTG
* * * * * * *
35702219 CGCATTATGCCTCTCCGGTCAGCTTAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
65 CGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATAC
* * ** * *
35702284 AGAGTTCATTCC-CAGTCTAAGATCGGATCG
130 GGAGTTCATTCCAC-GTCTAAG-CCCCAGCC
* * * * ** * * * *
35702314 AACCGAGGGTTGTGGCAGTAGGATCGACAGCATGTAGGGGGGGATCGGG-TCGGTCCCCGCCATG
1 AACCGAGGGTTGTGGCAATAGGACCGACAACACGTAAAGGGGGACCGGGCT-GATCCCCGGCTTG
* * * * *
35702378 TGCATTCTACCTCTCCGGTTGGCTGATCCCCCGCACACTCGTTCCGTGGGTTGGCTTAGGCATAC
65 CGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATAC
*
35702443 GGAGTTCATTCCATGTCTAAGC
130 GGAGTTCATTCCACGTCTAAGC
35702465 ATACGAAGTT
Statistics
Matches: 249, Mismatches: 56, Indels: 11
0.79 0.18 0.03
Matches are distributed among these distances:
157 1 0.00
158 30 0.12
159 214 0.86
160 4 0.02
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.22
Consensus pattern (158 bp):
AACCGAGGGTTGTGGCAATAGGACCGACAACACGTAAAGGGGGACCGGGCTGATCCCCGGCTTGC
GCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCACGTCTAAGCCCCAGCC
Found at i:35703284 original size:157 final size:155
Alignment explanation
Indices: 35703062--35703488 Score: 500
Period size: 157 Copynumber: 2.7 Consensus size: 155
35703052 AGCACGTAGT
* ** * * * *
35703062 GGGGGACCGGAGTCGATCCTCGGCTTGCGCATTATGCCTCTTCGGTTGGCTCAGCACCCGTACGC
1 GGGGGACTGG-GTCGATCCTC-GCTTATGCATTCTGCCTCTTCGGCTGGCTGAGCACCCGCACGC
35703127 TCGTTTCATGGGTTGACTTATGCATACTGAGTTCATTCCCAGTCTAAGATCGAA-CTAGACCGAG
64 TCGTTTCATGGGTTGACTTATGCATAC-GAGTTCATTCCCAGTCTAAGATCGAATC-AGACCGAG
* * * *
35703191 GGTTGTGGCAGTAGGATCGATAGCATGCA
127 GGTTGCGGCAGCAGGATAGATAGCACGCA
*
35703220 GGGGGACTGGGTCGATCCTCGACTTATGCATTCTGCCTCTTCGACTGGCTGAGCACCCGCACGCT
1 GGGGGACTGGGTCGATCCTCG-CTTATGCATTCTGCCTCTTCGGCTGGCTGAGCACCCGCACGCT
* * *
35703285 CGTTTCATGGGTTGACTTATGCATACGAAGTTGATTCCCAGTCTAAGATCGGATCGGACCGAGGG
65 CGTTTCATGGGTTGACTTATGCATACG-AGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGG
*
35703350 TTGCGGCAGCAGGATAGATAGCACGTA
129 TTGCGGCAGCAGGATAGATAGCACGCA
* * * * * * *
35703377 GGGGAGA-TCGGGTCGGTCCCCGCATCTGCATTCTGCCTCTCCGGCTGGCTGAGCCCCCGCACAC
1 GGGG-GACT-GGGTCGATCCTCGCTTATGCATTCTGCCTCTTCGGCTGGCTGAGCACCCGCACGC
* * * *
35703441 TCATTTCGTGGGTTGTCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
64 TCGTTTCATGGGTTGACTTATGCATAC-GAGTTCATTCCCA-GTCTAAG
35703489 CATACGAAGT
Statistics
Matches: 233, Mismatches: 29, Indels: 15
0.84 0.10 0.05
Matches are distributed among these distances:
156 5 0.02
157 204 0.88
158 24 0.10
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (155 bp):
GGGGGACTGGGTCGATCCTCGCTTATGCATTCTGCCTCTTCGGCTGGCTGAGCACCCGCACGCTC
GTTTCATGGGTTGACTTATGCATACGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTT
GCGGCAGCAGGATAGATAGCACGCA
Found at i:35703492 original size:26 final size:26
Alignment explanation
Indices: 35703462--35703514 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35703452 GTTGTCTTAG
*
35703462 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
35703488 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
35703514 G
1 G
35703515 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:35703647 original size:184 final size:183
Alignment explanation
Indices: 35703305--35703673 Score: 458
Period size: 184 Copynumber: 2.0 Consensus size: 183
35703295 GTTGACTTAT
* * * *
35703305 GCATACGAAGTTGATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATAGATA
1 GCATACGAAGTTGATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCAGGATAGACA
* * * * *
35703370 GCACGTAGGGGAGATCGGGTCGGTCCCCGCATCTGCATTCTGCCTCTCCGGCTGGCTGAGCCCCC
66 GAACGAAGAGGAGATCGGGTCGATCCCCGCATCTGCATTCTGCCTCTCCGACTGGCTGAGCCCCC
*
35703435 GCACACTCATTTCGTGGGTTGTCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 GCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * *
35703488 GCATACGAAGTTTATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGTAGCAGGATCGGCC
1 GCATACGAAGTTGATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCAGGAT-AGAC
* * * *
35703553 A-AACGCAAGAGG-GATCGGG-CTGATCCCTGGCTTGTGCATTCTGCCTCTCTGACTGGCTGAGC
65 AGAACG-AAGAGGAGATCGGGTC-GATCCC-CGCATCTGCATTCTGCCTCTCCGACTGGCTGAGC
* * * * *
35703615 GCCCGCAC-GTCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAA
127 CCCCGCACACT-CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
35703672 GC
1 GC
35703674 CCCAGTCAGA
Statistics
Matches: 158, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
182 1 0.01
183 71 0.45
184 86 0.54
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (183 bp):
GCATACGAAGTTGATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCAGGATAGACA
GAACGAAGAGGAGATCGGGTCGATCCCCGCATCTGCATTCTGCCTCTCCGACTGGCTGAGCCCCC
GCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:35704337 original size:26 final size:26
Alignment explanation
Indices: 35704308--35704384 Score: 109
Period size: 26 Copynumber: 3.0 Consensus size: 26
35704298 TGACTTAGGA
35704308 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
35704334 ATACGGAGTTCATCCCCAGTCTAAAC
1 ATACGGAGTTCATCCCCAGTCTAAGC
* * * *
35704360 ATACGAAGTTTATTCCCAATCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
35704385 ATCAAACTAG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:35704739 original size:158 final size:157
Alignment explanation
Indices: 35704379--35704857 Score: 456
Period size: 158 Copynumber: 3.0 Consensus size: 157
35704369 TTATTCCCAA
* * *
35704379 TCTAAGATCAAACTAGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGCA-AGGGGGACCGAG-
1 TCTAAGATCAAACCAGACTGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGAGGGGGACCGGGC
* * *
35704442 TCGATCCCCGGCTTACGCATTCTACCTCTCCGGCTGGCTGAGCGCCCGCAC-ATCCGTTTCG-TG
66 T-GATCCCCGACTTACGCATTCTGCCTCTCCGG-TGGCTGAGCGCCCGCACGCT-CGTTT-GATG
* **
35704505 GTTTAGCTTAGGCATAGGGAGTTCATTCCATG
127 GTTGA-CTTAGGCATACAGAGTTCATTCCATG
* * ** * * * * *
35704537 TCTAAG-CCGTAGTCGGACTGAGGGTTGTGGCAG-CGAGA-CTGACAGTACGCAGAGGGGGATCG
1 TCTAAGATC-AAACCAGACTGAGGGTTGCGGCAGTAG-GATC-GACAGCACGCAGAGGGGGACCG
* * * * * *
35704599 GGCTGATCCCCGACTTACGCATTATGCCTCTTCGGTGGCTCAGCGCCTGAACGCTCATTTGATAG
63 GGCTGATCCCCGACTTACGCATTCTGCCTCTCCGGTGGCTGAGCGCCCGCACGCTCGTTTGAT-G
35704664 GTTGACTTAGGCATACAGAGTTCATTCCCA-G
127 GTTGACTTAGGCATACAGAGTTCATT-CCATG
* * *
35704695 TCTAAGATCAAACCAGACTGAGGGTTGCGACAGTAGGATCGACAGCACACAG-GGGGG-CCAGGC
1 TCTAAGATCAAACCAGACTGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGAGGGGGACCGGGC
* * * * * * *
35704758 CGATCCCTGACTTGCGCATTCTGCCTCTCCGATCGGTTGAGCCCCCGCACGCTCGTTTCATGGGT
66 TGATCCCCGACTTACGCATTCTGCCTCTCCGGT-GGCTGAGCGCCCGCACGCTCGTTTGAT-GGT
* *
35704823 TGGCTTAGGCATACAGAGTTTATTCCATG
129 TGACTTAGGCATACAGAGTTCATTCCATG
35704852 TCTAAG
1 TCTAAG
35704858 CATACGGAGT
Statistics
Matches: 255, Mismatches: 52, Indels: 29
0.76 0.15 0.09
Matches are distributed among these distances:
156 34 0.13
157 61 0.24
158 110 0.43
159 49 0.19
160 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
TCTAAGATCAAACCAGACTGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGAGGGGGACCGGGC
TGATCCCCGACTTACGCATTCTGCCTCTCCGGTGGCTGAGCGCCCGCACGCTCGTTTGATGGTTG
ACTTAGGCATACAGAGTTCATTCCATG
Found at i:35704860 original size:26 final size:26
Alignment explanation
Indices: 35704831--35704883 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35704821 GTTGGCTTAG
*
35704831 GCATACAGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
35704857 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
35704883 G
1 G
35704884 ATCGGGTCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:35705225 original size:26 final size:26
Alignment explanation
Indices: 35705196--35705248 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
35705186 GTTGACTTAG
*
35705196 GCATATAGAGTTCA-TCCACAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
* *
35705222 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
35705248 G
1 G
35705249 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:35705511 original size:158 final size:159
Alignment explanation
Indices: 35705222--35705723 Score: 438
Period size: 158 Copynumber: 3.2 Consensus size: 159
35705212 CACAGTCTAA
* * * * * *
35705222 GCATACGGAGTTTATTCCCA-GTCTAAG-ATCGGATCAGACCGAGGGTTGC-AGCAGCAGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCAAGGGTTGCGA-CAGCAGGACCG
* * * * * *
35705284 ACAGCACGC-AGGGGGGACTGGGC-CGATCC-CCATCTTGCGCATTCTACCTCTCCGGCTGGCT-
64 ACAGCAC-CTAGGGGGGAC-CGGCTCGATCCTCGA-CTTGCGCATTATGCCTCTCCGACCGGCTC
*
35705345 AAGTGCCCGCACGCCTGTTTCGTGGGTTGGCTTAG
126 AA-CGCCCGCACGCCTGTTTCGTGGGTTGGCTTAG
* * ** * * ** *
35705380 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGTAGCTGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTGCGACAGCAGGACCGAC
* *
35705444 AGTACCTAGAGGGGGACCGG-TCGATCC-CTGACTTGCGTATTATGCCTCTCCGACCGGCTCAAC
66 AGCACCTAG-GGGGGACCGGCTCGATCCTC-GACTTGCGCATTATGCCTCTCCGACCGGCTCAAC
* * * * *
35705507 GCCCGAACACTTGTTTCATGGGTTGACTTAG
129 GCCCGCACGCCTGTTTCGTGGGTTGGCTTAG
* * * * *
35705538 GAATACAGAGTTCATTCCCA-GTCTAAG-ATCGGACCAGACCAAGGGTTGCGACAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCAAGGGTTGCGACAGCAGGACCGA
* * * * * *
35705601 TAGCACGTAGGGGGGACCGGCTCGATCCTCGACTTGTGCATTCTGCCTCTCCGACCGGCTGAGCG
65 CAGCACCTAGGGGGGACCGGCTCGATCCTCGACTTGCGCATTATGCCTCTCCGACCGGCTCAACG
*
35705666 -CCGCATG-CTCGTTTCGTGGGTTGGCTTAG
130 CCCGCACGCCT-GTTTCGTGGGTTGGCTTAG
*
35705695 GCAGACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
35705724 TATGAAGTTC
Statistics
Matches: 271, Mismatches: 58, Indels: 30
0.75 0.16 0.08
Matches are distributed among these distances:
156 4 0.01
157 57 0.21
158 194 0.72
159 16 0.06
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTGCGACAGCAGGACCGAC
AGCACCTAGGGGGGACCGGCTCGATCCTCGACTTGCGCATTATGCCTCTCCGACCGGCTCAACGC
CCGCACGCCTGTTTCGTGGGTTGGCTTAG
Found at i:35706237 original size:158 final size:157
Alignment explanation
Indices: 35705937--35706431 Score: 473
Period size: 158 Copynumber: 3.1 Consensus size: 157
35705927 CTAAGAGTAA
* * * *
35705937 GGAGTTCATTCCCA-GTCTAAGATCAAATCAGACC-AAGGGTTGCGACAGCAAGATC-AGCAGCT
1 GGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAA-GGTTGCGACAGCAAGATCGA-CAGCA
* * * * * * * * * *
35705999 CGCAGGGGGGACCGCGCCAATCCCCGGCTTGCGTATTTTGCCTCTCCGACCGGCTGAGCACCCGC
63 CGCAGGGGAGACCGAGCCGATCACTGACTTACGCATTATGCCTCTCCGA-CGGCTGAGCGCCCGC
* * * * *
35706064 ACGCCCGTTTTGTGGGTTGGCTTAAGCATAG
127 ACGCTCATTTCGTGGGTTGGCTTAGGCATAC
* * * **
35706095 GGAGTTCATTCCATGTCTAAG-TCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGA-CTGACAGCA
1 GGAGTTCATTCCATGTCTAAGAT--CAGACCGGACCGAAGGTTGCGACAGCAAGATC-GACAGCA
* * * *
35706157 CGCAGAGGGAGATCGAGTCGATCACTGACTTACGCATTATGCCTCTCCGACGGCTCAACGCCCGC
63 CGCAG-GGGAGACCGAGCCGATCACTGACTTACGCATTATGCCTCTCCGACGGCTGAGCGCCCGC
*
35706222 ACGCTCATTTCGTGGGTTGACTTAGGCATAC
127 ACGCTCATTTCGTGGGTTGGCTTAGGCATAC
* *
35706253 GGAGTTCATTCCCA-GTCTAAGATCAGACCGTACTGAAGGTTGCGACAGCAAGATCGACAGCACG
1 GGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAAGGTTGCGACAGCAAGATCGACAGCACG
* * * * * * * * * **
35706317 CAGGGGGGACCGGGCCGGTCCCTGGCTTGCGCATTTTGCCTCTCCAGCCGGTTGAGCGCCCATAC
65 CAGGGGAGACCGAGCCGATCACTGACTTACGCATTATGCCTCTCC-GACGGCTGAGCGCCCGCAC
35706382 GCTCATTTCGTGGGTTGGCTTAGGCATAC
129 GCTCATTTCGTGGGTTGGCTTAGGCATAC
35706411 GGAGTTCATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
35706432 CATACGAAGT
Statistics
Matches: 272, Mismatches: 52, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
157 44 0.16
158 186 0.68
159 42 0.15
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
GGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAAGGTTGCGACAGCAAGATCGACAGCACGC
AGGGGAGACCGAGCCGATCACTGACTTACGCATTATGCCTCTCCGACGGCTGAGCGCCCGCACGC
TCATTTCGTGGGTTGGCTTAGGCATAC
Found at i:35706436 original size:26 final size:26
Alignment explanation
Indices: 35706405--35706457 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35706395 GTTGGCTTAG
*
35706405 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
35706431 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
35706457 G
1 G
35706458 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:35706631 original size:26 final size:26
Alignment explanation
Indices: 35706601--35706653 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35706591 GTTGACTTAG
35706601 GCATAC-GAAATTCATCCCCAGTCTAA
1 GCATACAG-AATTCATCCCCAGTCTAA
* *
35706627 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
35706653 G
1 G
35706654 ATCAAATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAATTCATCCCCAGTCTAA
Found at i:35706777 original size:696 final size:693
Alignment explanation
Indices: 35705119--35706970 Score: 2306
Period size: 709 Copynumber: 2.6 Consensus size: 693
35705109 GAGGGAGACT
* * * ** * * *
35705119 AGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGATCGACTGAGCGGCCATACACTCGTTTCGT
1 AGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGTACGCTCGTTTCGT
* * * *
35705184 GGGTTGACTTAGGCATA-TAGAGTTCATCCACAGTCTAAGCATACGGAGTTTATTCCCAGTCTAA
66 GGGTTGACTTAGGCATACGA-AGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
** * *
35705248 GATCGGATCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGGACTGGGCCGATCC
130 GATCAAATCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGAC-GGGCCGATCC
** * * * * * * * *
35705313 CCATCTTGCGCATTCTACCTCTCCGGCTGGCTAAGTGCCCGCACGCCTGTTTCGTGGGTTGGCTT
194 CCGGCTTGCGTATTTTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTT
* * * *
35705378 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGTAGCTGGACCGA
259 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACTGA
* * *
35705443 CAGTACCTAGAGGGGGACCGGTCGATCCCTGACTTGCGTATTATGCCTCTCCGACCGGCTCAACG
324 CAGAACC-AGAGGGAGACCGGTCGATCCCTGACTTGCGCATTATGCCTCTCCGA-CGGCTCAACG
* * * * * *
35705508 CCCGAACACTTGTTTCATGGGTTGACTTAGGAATACAGAGTTCATTCCCAGTCTAAGATCGGACC
387 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * *
35705573 AGACCAAGGGTTGCGACAGCAGGATCGATAGCACGTAGGGGGGACCGGCTCGATCCTCGACTTGT
452 AGACCAAGGGTTGCGACAGCAAGATCGACAGCACGCAGGGGGGACCGGCTCGATCCTCGACTTGC
*
35705638 GCATTCTGCCTCTCCGACCGGCTGAGCGCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCAGACGG
517 GCATTCTGCCTCTCCGACCGGCTGAGCGCCGCATGCTCATTTCGTGGGTTGGCTTAGGCAGACGG
* * *
35705703 AGTTCATTCCATGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTT
582 AGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
* * * *
35705768 ACGGTAGCAGGAGCAGCAGCATGATCAGCAGCACGTAGGGAAGGATC
647 ACGGTAGCAGGACCAACAGCAGGATCAGCAGCACGCAGGGAAGGATC
* * * *
35705815 GGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGGCCTCTCTGACCGGTTGAGTGCCTGT
1 AGGCCGATCCCTGGCTTGTGCATTCTG-----CC--T----CTC-C-GATCGGTTGAGCGCCCGT
* * *
35705880 ACGCTCGTTTTGTGGGTTGACTTAGGTATACGGAGTTCATCCCCAGTCTAAG-AGTA-AGGAGTT
53 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA-TACA-GAGTT
* * * * *
35705943 CATTCCCAGTCTAAGATCAAATCAGACCAAGGGTTGCGACAGCAAGATCAGCAGCTCGCAGGGGG
116 CATTCCCAGTCTAAGATCAAATCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGG
* * *
35706008 GACCGCGCCAATCCCCGGCTTGCGTATTTTGCCTCTCCGACCGGCTGAGCACCCGCACGCCCGTT
181 GA-CGGGCCGATCCCCGGCTTGCGTATTTTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTT
* * *
35706073 TTGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGTCCCAGCCGGACCGAGGGTTGT
245 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGT
* * * *
35706138 GGCAGCGGGACTGACAGCACGCAGAGGGAGATCGAGTCGATCACTGACTTACGCATTATGCCTCT
310 GGCAGCGGGACTGACAGAAC-CAGAGGGAGACCG-GTCGATCCCTGACTTGCGCATTATGCCTCT
* *
35706203 CCGACGGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
373 CCGACGGCTCAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
*
35706268 TCTAAGATCAGACC-GTACTGAA-GGTTGCGACAGCAAGATCGACAGCACGCAGGGGGGACCGGG
438 TCTAAGATCAGACCAG-AC-CAAGGGTTGCGACAGCAAGATCGACAGCACGCAGGGGGGACC-GG
* * * *
35706331 C-CGGTCC-CTGGCTTGCGCATTTTGCCTCTCC-AGCCGGTTGAGCGCC-CATACGCTCATTTCG
500 CTCGATCCTC-GACTTGCGCATTCTGCCTCTCCGA-CCGGCTGAGCGCCGCAT--GCTCATTTCG
*
35706392 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
561 TGGGTTGGCTTAGGCAGACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
* * * * *
35706457 GATC-GAACCGGACCGAGGGTTACGGTAGTAGGACCAACAGTAGGATCGGTAGCACGCAGGGAGG
626 GATCAG-ACCGGACCGAGGGTTACGGTAGCAGGACCAACAGCAGGATCAGCAGCACGCAGGGAAG
35706521 GATC
690 GATC
* *
35706525 AGGCCGATCCCTGGCTTGTGCATTCTG-CTATCCGATCGGTTGAGCGCCCGTACGCTCGTTTCAT
1 AGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGTACGCTCGTTTCGT
*
35706589 GGGTTGACTTAGGCATACGAAATTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAG
66 GGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAG
** * * *
35706654 ATCAAATTGGATCGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAGGGGGGATCGGGCCGATCCC
131 ATCAAATCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGA-CGGGCCGATCCC
* *
35706719 CGGCTTGCGTATTTTGCCTCTCCGACCGGTTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTA
195 CGGCTTGCGTATTTTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTA
* *
35706784 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACTGGC
260 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACTGAC
* * * * * * * * * * *
35706849 AGAATACAGAGGGTGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCA
325 AGAA-CCAGAGGGAGACC-GGTCGATCCCTGACTTGCGCATTATGCCTCTCC-GACGGCTCAACG
* *
35706914 CCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
387 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
35706971 CATACGGAGT
Statistics
Matches: 988, Mismatches: 135, Indels: 65
0.83 0.11 0.05
Matches are distributed among these distances:
696 323 0.33
697 60 0.06
698 2 0.00
701 2 0.00
702 1 0.00
703 1 0.00
704 1 0.00
707 3 0.00
708 8 0.01
709 396 0.40
710 191 0.19
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (693 bp):
AGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGTACGCTCGTTTCGT
GGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAG
ATCAAATCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGACGGGCCGATCCCC
GGCTTGCGTATTTTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACTGACA
GAACCAGAGGGAGACCGGTCGATCCCTGACTTGCGCATTATGCCTCTCCGACGGCTCAACGCCCG
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
CAAGGGTTGCGACAGCAAGATCGACAGCACGCAGGGGGGACCGGCTCGATCCTCGACTTGCGCAT
TCTGCCTCTCCGACCGGCTGAGCGCCGCATGCTCATTTCGTGGGTTGGCTTAGGCAGACGGAGTT
CATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGG
TAGCAGGACCAACAGCAGGATCAGCAGCACGCAGGGAAGGATC
Found at i:35706974 original size:26 final size:26
Alignment explanation
Indices: 35706944--35706995 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35706934 GTTGGCTTAG
35706944 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
35706970 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35706996 AAGTTTAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35707683 original size:158 final size:159
Alignment explanation
Indices: 35707378--35707723 Score: 446
Period size: 158 Copynumber: 2.2 Consensus size: 159
35707368 TCCCCAGTCT
* * *
35707378 AAGCACACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTGCGGCAGCGGGACTGG
1 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTGCGACAGCAGGACTGG
** * * * *
35707443 CAGCACGTAGAGGGGGACCGGGTCGATCTTCGACTTGCGCATTATGCCTCTTCGGCCGGCTCAGC
66 CAGCACGTAGAGGGGGACCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCGACCGACTCAGC
35707508 GCCCGCACGCTCCTTTCGTGGGTTGACTG
131 GCCCGCACGCTCCTTTCGTGGGTTGACTG
*** * * * *
35707537 AAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACTGAA-GGTTGTGACAGCAGGATTG
1 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGAC-CAAGGGTTGCGACAGCAGGACTG
* *
35707601 GCAGCACGTAG-GGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGACTGAG
65 GCAGCACGTAGAGGGGGACCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCGACCGACTCAG
* * * *
35707665 TGCCCGCACGCTCGTTTCGTGGGTTGGCTT
130 CGCCCGCACGCTCCTTTCGTGGGTTGACTG
*
35707695 AGGCATACGGAGTTCATT-CCATGTCTAAG
1 AAGCATACGGAGTTCATTCCCA-GTCTAAG
35707724 CCCCAGTCGG
Statistics
Matches: 162, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
157 3 0.02
158 95 0.59
159 62 0.38
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (159 bp):
AAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTGCGACAGCAGGACTGG
CAGCACGTAGAGGGGGACCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCGACCGACTCAGC
GCCCGCACGCTCCTTTCGTGGGTTGACTG
Found at i:35707910 original size:26 final size:26
Alignment explanation
Indices: 35707880--35707932 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35707870 GTTGACTTAG
35707880 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* **
35707906 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
35707932 G
1 G
35707933 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:35709038 original size:26 final size:26
Alignment explanation
Indices: 35708987--35709038 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
35708977 TTGACTTAGA
* *
35708987 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAATATAAG
* *
35709013 CATATGGAGTTCATTCCCAATATAAG
1 CATACGGAGTTCATCCCCAATATAAG
35709039 ATCAGATCAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAATATAAG
Found at i:35709196 original size:367 final size:363
Alignment explanation
Indices: 35707537--35709218 Score: 1383
Period size: 367 Copynumber: 4.6 Consensus size: 363
35707527 GGGTTGACTG
* * * * *
35707537 AAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACTGAAGGTTGTGACAGCAGGATTGG
1 AAGCATACGGAGTTCATTCCCAGTCTAAGA-TCGATCAGAC-GAGGGTTGCGACAGCAGGATCGA
* * * * ** * *
35707602 CAGCACGTAGGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGACTGAGTG
64 CAGCACGTAGGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGGTCGGCTGAGCG
* *
35707667 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTC
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG-CCCAGTC
** * * * *
35707732 GGACCGAGGGTTGTGGTAGCAG-GGCTAGCAGTGGGATCGGCAGCCCACAGAGGGGGACCGGGCT
193 GGACCGAGGGTTGTGGTAGCAGAACCGA-CAGCGAGATCGGCAGCACACAGAGGGGGACCGGGCT
* * ** * * * *
35707796 GATCC-TCTGCTTGCGCATTATGCCTCTTCAATTGCTCTTCGATCGACTGAGCACCCTGTACGCT
257 GAACCTTCAGCTTGCGCATTATGCCTCTTCGGTGGCTC-TCGACCGGCTGAGCA-CCTGCACGCT
35707860 CGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCT
320 CGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCT
* * *
35707904 AAGCATACGGAGTTCATTGCCAGTCTAAGATCGAACCAGATCGAGGGTTGCGACAGCAGGATTGA
1 AAGCATACGGAGTTCATTCCCAGTCTAAGATCG-ATCAGA-CGAGGGTTGCGACAGCAGGATCGA
* * *
35707969 TAGCACGTAGGGGGGACC-AGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCAGGTCGGCTGAGC
64 CAGCACGTAGGGGGGACCGA-GCCGATCCCCGGCTTACGCATTCTGCCTCTCTGGTCGGCTGAGC
*
35708033 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCTAGC
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCC-AGT
* * * * * * * * * *
35708098 CAGACCGAGGGTTGTGGCAGCAGGATCGACAACGGGATGGGCAGCGCGCAGAGAGGGACCGGGCT
192 CGGACCGAGGGTTGTGGTAGCAGAACCGACAGCGAGATCGGCAGCACACAGAGGGGGACCGGGCT
* * * * * * * * *
35708163 GATCCCT-GGCCTGTGCATTATGCCTATTC----G-----G-CCGGTTGAGCACCTGAACGCTTG
257 GAACCTTCAGCTTGCGCATTATGCCTCTTCGGTGGCTCTCGACCGGCTGAGCACCTGCACGCTCG
*
35708217 TTTCATGGGTTGACTTA-GCAATACAGAGTTCATTCCCAGTCT
322 TTTCATGGGTTGACTTAGGC-ATACAGAGTTCATCCCCAGTCT
* * * *
35708259 AAGCATACGGTGTTCATTCCCAGTCTAAGATCGATCGGACCGAGGGCTTGTGACAGCCA-GATAG
1 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGATCAGA-CGAGGG-TTGCGACAG-CAGGAT-C
* * * * * * *
35708323 GA-TGCACGCA--GGGGACCGAAGCCGATTGCCCCGGC-TAGCACATTTTGCCTCTAATAGTTGG
62 GACAGCACGTAGGGGGGACCG-AGCCGA-T-CCCCGGCTTA-CGCATTCTGCCTCT-CTGGTCGG
* * *
35708384 CTTGAGCCGCCTGCCACGCTAC-TATCATGGGTTGGCTTAGGCATATGGTGTTCATCTCCATGTC
122 C-TGAG-CGCCCG-CACGCT-CGTTTCATGGGTTGGCTTAGGCATATGGAGTTCAT-TCCATGTC
* * * *
35708448 TAAGCCCATAGTCCGGACCGATAAGGGTTTACTGATTAGGCA-AGACCGGCAGCGAG-TCGACCA
182 TAAGCCC--AGT-CGGACCG---AGGG-TT-GTG-GTA-GCAGA-ACCGACAGCGAGATCG-GCA
* * * * ** * *
35708511 GCACATATAGAGGGGACTGGGCT-AA--TTGCTCGACTTTTGCATTATGCCTCTCCGGCCGGCCT
235 GCACACAGAG-GGGGACCGGGCTGAACCTT-C-AG-CTTGCGCATTATGCCTCTTCGG-TGG-CT
* * * * * * *
35708573 CTAACGATCGGCTGAAGCGCCCGCACG-T-TTTTCGTGGGTTGACTTTGGCA-GCAGAGTTCATT
294 CT--CGACCGGCTG-AGCACCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCA-T
35708635 CCCCAGTCT
355 CCCCAGTCT
* * * ** * ** * *
35708644 AAGCCTACGAAGTTCATTCCCAGTCTAAGATTAGGCCGGACTGAGGGTTGCGGTAACAGGATCTA
1 AAGCATACGGAGTTCATTCCCAGTCTAAGA-TCGATCAGAC-GAGGGTTGCGACAGCAGGATCGA
* * * * * * *
35708709 TAGCACATAGGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTACCTCTC-GGCCGACTGAGCG
64 CAGCACGTAGGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGGTCGGCTGAGCG
* * * *
35708773 CCTGCACGCTCGTTACGTGGGTTGGCTTAGGCATATGGAGTTCATTGCATGTCTAAGCCTCAGTC
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCC-CAGTC
* * * *
35708838 GGACCGAGGGTTGTGGTAGCAGAACCGATAGCGAGATCGGTAGCACGCAGAGGGGGACCTGGCT-
193 GGACCGAGGGTTGTGGTAGCAGAACCGACAGCGAGATCGGCAGCACACAGAGGGGGACCGGGCTG
* * *
35708902 AACCTTCAGCTTGCGCATTATGCCTCTTCGGTCGGCCTCTCGGCCGGTTGAGCACCTGCATGCTC
258 AACCTTCAGCTTGCGCATTATGCCTCTTCGGT-GG-CTCTCGACCGGCTGAGCACCTGCACGCTC
* * *
35708967 ATTTCATGGGTTGACTTAGACATACGGAGTTCATCCCCAGTCT
321 GTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCT
* * * * *
35709010 AAGCATATGGAGTTCATTCCCAATATAAGATCAGATCAGATCGAGGGTTGCGATAGGAGGATCGA
1 AAGCATACGGAGTTCATTCCCAGTCTAAGATC-GATCAGA-CGAGGGTTGCGACAGCAGGATCGA
* * * * ** * * *
35709075 CAGCACGCAGAGGGGATCGATCCGATCCCCAACTTACGCATTCTACCTCTCTGGTCGGTTGAGCA
64 CAGCACGTAGGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGGTCGGCTGAGCG
* * * * *
35709140 TCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG-CCCAGTC
* *
35709205 GAACCAAGGGTTGT
193 GGACCGAGGGTTGT
35709219 AGCAGCGGGA
Statistics
Matches: 1050, Mismatches: 190, Indels: 150
0.76 0.14 0.11
Matches are distributed among these distances:
353 7 0.01
354 17 0.02
355 99 0.09
356 31 0.03
357 6 0.01
358 4 0.00
359 5 0.00
360 37 0.04
361 16 0.02
362 3 0.00
363 7 0.01
364 9 0.01
365 9 0.01
366 126 0.12
367 350 0.33
368 22 0.02
369 25 0.02
370 28 0.03
371 13 0.01
372 18 0.02
373 4 0.00
376 7 0.01
377 4 0.00
378 14 0.01
379 36 0.03
380 6 0.01
381 4 0.00
382 3 0.00
384 29 0.03
385 70 0.07
386 24 0.02
387 17 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (363 bp):
AAGCATACGGAGTTCATTCCCAGTCTAAGATCGATCAGACGAGGGTTGCGACAGCAGGATCGACA
GCACGTAGGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGGTCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCAGTCGGA
CCGAGGGTTGTGGTAGCAGAACCGACAGCGAGATCGGCAGCACACAGAGGGGGACCGGGCTGAAC
CTTCAGCTTGCGCATTATGCCTCTTCGGTGGCTCTCGACCGGCTGAGCACCTGCACGCTCGTTTC
ATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCT
Found at i:35709531 original size:26 final size:26
Alignment explanation
Indices: 35709491--35709543 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35709481 GGTGGCTTAG
*
35709491 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGGTCATTCCCA-GTCTAA
35709517 GCATACGGAGGTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
35709543 G
1 G
35709544 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:35711278 original size:26 final size:26
Alignment explanation
Indices: 35711242--35711293 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
35711232 GTTGACTTAG
35711242 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
35711268 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35711294 ATCAGACTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35712637 original size:159 final size:159
Alignment explanation
Indices: 35712102--35712638 Score: 501
Period size: 159 Copynumber: 3.4 Consensus size: 159
35712092 TGGTCGGCTG
* *
35712102 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCA
1 AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * ** *
35712167 GATTAGACCAAGGGTTGTGGCAGCAGGATCGGTAGCACGTAG-GGGGGACCGGGCCGATCCCCGG
66 GATCAGATCAAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGGACTGGGCCGATCCCCGG
* * * ** *
35712231 CTTGTGCATTCTGCTTCTTCGATCGACTG
131 CTTGCGCATTCTGCCTCTTCGACCGGTTA
* * * * * **
35712260 AGCGCCCGCTCGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCC
1 AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-AT
* * * * * * * * * *
35712324 CAG--CCGAATCGAGGGTTATGGCAGCGGGACCGACAGAACGCAGAGGGAGACTGGGCCAATCCT
64 CAGATCAG-ATCAAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGGACTGGGCCGATCCC
* * * *
35712387 TGGCTTACGCATTATGCCTCTTCGACCGGCTCA
128 CGGCTTGCGCATTCTGCCTCTTCGACCGG-TTA
* * * * * * * *
35712420 A-CGCCTGCATGCTTGTTTCATGAGTTAACTTATGCATACGGAGTTAATTCCCAATCTAAGATCA
1 AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
** * * * * **
35712484 GATCAGATCAAGGGTTGCAGTAGTAGGATCAACAGCATGTAGAGGGGGACTGGGCCGATCCCCAA
66 GATCAGATCAAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGGACTGGGCCGATCCCCGG
*
35712549 CTTGCGCATTCTGCCTCTCCGACCGGTTA
131 CTTGCGCATTCTGCCTCTTCGACCGGTTA
* * *
35712578 AGCACCTGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
1 AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
35712639 GATACGGAGT
Statistics
Matches: 291, Mismatches: 78, Indels: 19
0.75 0.20 0.05
Matches are distributed among these distances:
157 4 0.01
158 89 0.31
159 192 0.66
160 6 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
GATCAGATCAAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGGACTGGGCCGATCCCCGG
CTTGCGCATTCTGCCTCTTCGACCGGTTA
Found at i:35713353 original size:26 final size:26
Alignment explanation
Indices: 35713317--35713369 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35713307 GGTTGGCTTG
35713317 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
35713343 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
35713369 G
1 G
35713370 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:35714414 original size:159 final size:156
Alignment explanation
Indices: 35713969--35714543 Score: 443
Period size: 158 Copynumber: 3.6 Consensus size: 156
35713959 ACCACCTATT
* * ** * * * *
35713969 CGATCCCTGGCTTGCGCATCCTACCTCTTTGGTCGGCTGAGCGCCCGCATGCTCGTTTTGTGGGT
1 CGATCCCCGACTTGCGCATTATGCCTCTTCGGTTGGCTGAGCGCCCGCACGCTCGTTTTGTGGGT
* * * * *
35714034 TGACTTAGGCATACGGACTTCATTCCCAGTCTAAGATTGGATCAGACTAAGGGTTGTGGTAGTAG
66 TGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGATTGGATCA-ACCAAGGGTTGTAGCAGCAG
* * *
35714099 GATCAGTAGCACGTAGGGAGGACCGGGC
129 GATCGGCAGCACGTAGGGGGGACCGGGC
* * * ** * ** * * *
35714127 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGTTGAGCGCCCGTTCGCCCATTTCGTGGGT
1 CGATCCCCGACTTGCGCATTATGCCTCTTCGGTTGGCTGAGCGCCCGCACGCTCGTTTTGTGGGT
* * ***** * * *
35714192 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAAATCGAGGGTTGTCA-CAGCA
66 TGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGATTGGATC-AACCAAGGGTTGT-AGCAGCA
* *
35714256 GGACCGGCAGCACGTAGAGGGGGATCGGGC
128 GGATCGGCAGCACGTAG-GGGGGACCGGGC
* * * * *
35714286 CGATCCTCGACTTGTGCATTATGCCTCTTCGGTTGGCTCAGCGCCTGCACGCTCGTTTTGTGAGT
1 CGATCCCCGACTTGCGCATTATGCCTCTTCGGTTGGCTGAGCGCCCGCACGCTCGTTTTGTGGGT
* * * *
35714351 TGACTTATGTATACAGAGTTCATTCCTAGTCTAAGGTTGGATCGAACCAAGGGTTGTAGCAGCAG
66 TGACTTAGGCATACGGAGTTCATTCC-AGTCTAAGATTGGATC-AACCAAGGGTTGTAGCAGCAG
* * *
35714416 GATCGACAACACGTAGGGGGGACCGGAC
129 GATCGGCAGCACGTAGGGGGGACCGGGC
* * * * *** * * * * **
35714444 CGGTCCCCTG-CTAGCGCATTTTGCCTCTCCGACCGACTAAGCACCCGCACGCTTGTTTCATGGG
1 CGATCCCC-GACTTGCGCATTATGCCTCTTCGGTTGGCTGAGCGCCCGCACGCTCGTTTTGTGGG
* * *
35714508 TTGGCTTAGGCATATGGAGTTCAGTCCATGTCTAAG
65 TTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAG
35714544 TATAGGAAGT
Statistics
Matches: 316, Mismatches: 93, Indels: 16
0.74 0.22 0.04
Matches are distributed among these distances:
157 4 0.01
158 190 0.60
159 121 0.38
160 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (156 bp):
CGATCCCCGACTTGCGCATTATGCCTCTTCGGTTGGCTGAGCGCCCGCACGCTCGTTTTGTGGGT
TGACTTAGGCATACGGAGTTCATTCCAGTCTAAGATTGGATCAACCAAGGGTTGTAGCAGCAGGA
TCGGCAGCACGTAGGGGGGACCGGGC
Found at i:35715274 original size:26 final size:24
Alignment explanation
Indices: 35715234--35715284 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 24
35715224 GTTGGCTTAG
35715234 GCATACGGTTCATT-CCATGTCTAA
1 GCATACGGTTCATTCCCA-GTCTAA
35715258 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAC-G-GTTCATTCCCAGTCTAA
35715284 G
1 G
35715285 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 6 0.25
25 1 0.04
26 14 0.58
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (24 bp):
GCATACGGTTCATTCCCAGTCTAA
Found at i:35715915 original size:729 final size:734
Alignment explanation
Indices: 35714647--35715989 Score: 1951
Period size: 729 Copynumber: 1.8 Consensus size: 734
35714637 ACCATCGCGG
** * *
35714647 GAGAGCCTAACCGGTGGCACTAGGGGTTCCGACGATTGGGGGGGCTGGGGGGGTGTGCGAACTTG
1 GAGAGCCTAACCGGCAGCACTAGGGGTTCCGACGATTGGGGGGGC-GAGGGGGTGTGCGAACATG
* * * *
35714712 ATCTGTGATGGGTGCTGGTAATTGACCGTTATTTTGACCCCTTATCCCTCATCAAACCTCATGAA
65 ATCTGCGATGGGTGCTGGTAATTGACCCTTATGTTGACCCCCTATCCCTCATCAAACCTCATGAA
* * *
35714777 CTCACACCCCCTTAAAGGGCATTTGAGATTTTGTAACTTTGCTGCCAGTAGCCATTAAAGTTTCT
130 CTCACACCCCCTTAAAGAGCATTTGAGATTTTATAACTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
35714842 GGAAATGGGGACACCTTTTTCAACGGTCACAAAATCTCTTCTCCACTTCGCGTTTCTAGCTGAAT
195 GGAAATGGGGACACCTTTTTCAACGATCACAAAA-CTCTTCACCACTTCGAGTTTCTAGCTGAAT
* *
35714907 TTTTTTGTACATGCCAAAAAAAAAAATACAAGGATCATTCTACCAAATTTTGGGGCAAAACCCTT
259 TTTTTGGTACATGCC--AAAAAAAAATACAAGGATCACTCTACCAAATTTTGGGGCAAAACCCTT
* ** *
35714972 TCTAAAAAAAATTTTAAAAAATCCCGAACGCGAAAAAGTTTTGAAAATCATGAAAATAGAAAACG
322 TCTAAAAAAAATTTTAAAAAATCCCAAACGCGAAAAAGTTTCAAAAATCATGAAAATAAAAAACG
* *
35715037 GGTTGTCTTGCCATAAAACTTCACATGAAGGTTTAGGGGACCATTGTATGATTTACAAAGCCTAA
387 GGTCGTCTTGCCATAAAACTTCACATGAAGGCTTAGGGGACCATTGTATGATTTACAAAGCCTAA
* **
35715102 AAATGGCATTGGCACGCCAGAAATATGAAGATGTGCTTGAACCCCACCTACCACCTGTTCGATCC
452 AAATGGCATTGGCACGCCAAAAATATGAAGATGCACTTGAACCCCACCTACCACCTGTTCGATCC
* *
35715167 CCGACTTGCACATCCTGCCTCTCTGGTCAGCTGAGCGCCCACACGCTCGTTTTGTGGGTTGGCTT
517 CCGACTTGCACATCCTGCCTCTCTGGTCAGCTGAGCGCCCACACGCTCATTTTGTGGGTTGACTT
35715232 AGGCATA-CG-GTTCATT-CCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGC
582 AGGCATATCGAGTTCATTCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGC
35715294 CATGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATCGTTTTTGCTCGGGGCACCATCG
646 CATGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATCGTTTTTGCTCGGGGCACCATCG
35715359 CTGGAGCATTGCCAAAGCATCGCC
711 CTGGAGCATTGCCAAAGCATCGCC
* *
35715383 GAGAGCCTAACCGGCAGCATTAGGGGTTCCGACGATT-GGGGGGC-AGGGGGTGTGCGCACATGA
1 GAGAGCCTAACCGGCAGCACTAGGGGTTCCGACGATTGGGGGGGCGAGGGGGTGTGCGAACATGA
* * * *
35715446 TGTGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGA-GAA
66 TCTGCGATGGGTGCTGGTAATTGACCCTTATGTTGACCCCCTATCCCTCATCAAACCTC-ATGAA
**
35715510 CTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
130 CTCACACCCCCTTAAAGAGCATTTGAGATTTTATAACTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * * *
35715575 -GAAATGGTGACACTTTTTTCAAACGATCACAAAA-TCTTCACCACTTTGATTTTTTAGCTGAAT
195 GGAAATGGGGACACCTTTTTC-AACGATCACAAAACTCTTCACCACTTCGAGTTTCTAGCTGAAT
*
35715638 TTTTTGGTGCAAT-CC-AAAAAAAATACAAGGATCACCTCTACCAAA-TTTGGGGACAAAACCCT
259 TTTTTGGTAC-ATGCCAAAAAAAAATACAAGGATCA-CTCTACCAAATTTTGGGG-CAAAACCCT
*
35715700 TTCT-AAAAAAATTTTAAAAAATCCCAAAC-CGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAA
321 TTCTAAAAAAAATTTTAAAAAATCCCAAACGCG-AAAAAGTTTCAAAAATCATG-AAAATAAAAA
* *
35715763 ACGGGTCGTCTTGCCATGAAACTTCACATGAAGGCTTGGGGGACCATTGTATGAATTTAC-AAGC
384 ACGGGTCGTCTTGCCATAAAACTTCACATGAAGGCTTAGGGGACCATTGTATG-ATTTACAAAGC
* * *
35715827 CATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGCACTTGAA-CCCACCTACCACTTGTTC
448 C-TAAAAATGGCATTGGCACGCCAAAAATATGAAGATGCACTTGAACCCCACCTACCACCTGTTC
* * * * ** * *
35715891 GATCCCCGGCTTGCGCATCCTGCCTTTTTGGTCAGCTGAGCGCCTGCATGCTCATTTTGTTGGTT
512 GATCCCCGACTTGCACATCCTGCCTCTCTGGTCAGCTGAGCGCCCACACGCTCATTTTGTGGGTT
*
35715956 GACTTAGGCATATGGAGTTCATTCCCAGTCTAAG
577 GACTTAGGCATATCGAGTTCATTCCCAGTCTAAG
35715990 ATAAGATAGG
Statistics
Matches: 539, Mismatches: 56, Indels: 29
0.86 0.09 0.05
Matches are distributed among these distances:
727 2 0.00
728 67 0.12
729 169 0.31
730 46 0.09
731 48 0.09
732 23 0.04
733 142 0.26
734 1 0.00
735 7 0.01
736 34 0.06
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Consensus pattern (734 bp):
GAGAGCCTAACCGGCAGCACTAGGGGTTCCGACGATTGGGGGGGCGAGGGGGTGTGCGAACATGA
TCTGCGATGGGTGCTGGTAATTGACCCTTATGTTGACCCCCTATCCCTCATCAAACCTCATGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTATAACTTTGCTGCCAGTAGCCATTAAAGTGTCTG
GAAATGGGGACACCTTTTTCAACGATCACAAAACTCTTCACCACTTCGAGTTTCTAGCTGAATTT
TTTGGTACATGCCAAAAAAAAATACAAGGATCACTCTACCAAATTTTGGGGCAAAACCCTTTCTA
AAAAAAATTTTAAAAAATCCCAAACGCGAAAAAGTTTCAAAAATCATGAAAATAAAAAACGGGTC
GTCTTGCCATAAAACTTCACATGAAGGCTTAGGGGACCATTGTATGATTTACAAAGCCTAAAAAT
GGCATTGGCACGCCAAAAATATGAAGATGCACTTGAACCCCACCTACCACCTGTTCGATCCCCGA
CTTGCACATCCTGCCTCTCTGGTCAGCTGAGCGCCCACACGCTCATTTTGTGGGTTGACTTAGGC
ATATCGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCATGG
TGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATCGTTTTTGCTCGGGGCACCATCGCTGGA
GCATTGCCAAAGCATCGCC
Found at i:35716971 original size:26 final size:26
Alignment explanation
Indices: 35716941--35716991 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
35716931 TGGCATAGGG
*
35716941 ATACGGAGTTCATT-CCACGTCTAAGC
1 ATACGAAGTTCATTCCCA-GTCTAAGC
35716967 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
35716992 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:35717624 original size:26 final size:26
Alignment explanation
Indices: 35717587--35717639 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35717577 GTTGACTTCG
*
35717587 GCATACGTAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
35717613 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35717639 G
1 G
35717640 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35717838 original size:12 final size:12
Alignment explanation
Indices: 35717821--35717849 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
35717811 AGGGTTGTGC
35717821 CAGCAGGATCGA
1 CAGCAGGATCGA
35717833 CAGCAGGATCGA
1 CAGCAGGATCGA
35717845 CAGCA
1 CAGCA
35717850 TGCAGAGAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.34, C:0.28, G:0.31, T:0.07
Consensus pattern (12 bp):
CAGCAGGATCGA
Found at i:35717988 original size:25 final size:26
Alignment explanation
Indices: 35717954--35718005 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
35717944 GTTGACTTAG
35717954 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35717979 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35718005 G
1 G
35718006 ATCAAATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35718760 original size:26 final size:26
Alignment explanation
Indices: 35718724--35718776 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35718714 GTTGGCTTTG
35718724 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
35718750 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35718776 G
1 G
35718777 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35719133 original size:26 final size:25
Alignment explanation
Indices: 35719103--35719154 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
35719093 GTTGACTTAG
*
35719103 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATAGGGAGTTCATCCC-AGTCTAA
*
35719129 GCATAGGGAGTTCATTCCAGTCTAA
1 GCATAGGGAGTTCATCCCAGTCTAA
35719154 G
1 G
35719155 ATCGAATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (25 bp):
GCATAGGGAGTTCATCCCAGTCTAA
Found at i:35721046 original size:26 final size:26
Alignment explanation
Indices: 35721007--35721062 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
35720997 TGGGTTGACT
*
35721007 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
*
35721033 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
35721059 TAAG
1 TAAG
35721063 ATCAGATCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:35721308 original size:159 final size:156
Alignment explanation
Indices: 35721104--35721539 Score: 412
Period size: 159 Copynumber: 2.8 Consensus size: 156
35721094 ATTGGCAAGC
* ** * *
35721104 ACGCAAGGGGGACCGGGTCGATCCTCGGCTTGTGCATTCTACCTCTCCGGCTGGCTGAGCGCCCG
1 ACGCAAGAGGGACCGGACCGATCCTCGGCTTGTGCATTCTGCCTCTCC-GCTGGCTGAGTGCCCG
* * *
35721169 TACGCTCGTTTCATGGGTTGGCATAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGCCAGAA
65 CACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCA-CCAGAA
* * ** ** *
35721234 CGAGGGTTGTGGCAGTGGGACCGGTAGC
129 CGAGGGTTGCGACAGCAGGACCGACAGA
* * * *
35721262 ACGC-AGAAGGGACCCGGACCGATCCTCGGCTTGTGCATTATGCCTCTCCGATCGGTTCAGTGCC
1 ACGCAAG-AGGGA-CCGGACCGATCCTCGGCTTGTGCATTCTGCCTCTCCGCT-GGCTGAGTGCC
* ** * ****
35721326 CGCACGCTCATTTCGTGGGTTAACTTAGGCATA-CAGAGTTCATTCCCA-GTCTAAGATTGTACC
63 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGA-AGTTCATT-CCATGTCTAAG-CCCCACC
* * *
35721389 AGATCGAGGGTTGCGATAGCAGGATCGACAGA
125 AGAACGAGGGTTGCGACAGCAGGACCGACAGA
* * * * * * * *
35721421 ACGTAAGGGGGACGGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTGCAGCCGGCTGAGTGCCCG
1 ACGCAAGAGGGACCGGACCGATCCTCGGCTTGTGCATTCTGCCTCT-CCGCTGGCTGAGTGCCCG
35721486 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG-AGTTCATTCCATGTCTAAGC
65 CACGCTCGTTTCGTGGGTTGGCTTAGGCATA-GGAAGTTCATTCCATGTCTAAGC
35721540 ATGCAGAGTT
Statistics
Matches: 220, Mismatches: 47, Indels: 23
0.76 0.16 0.08
Matches are distributed among these distances:
157 5 0.02
158 94 0.43
159 115 0.52
160 6 0.03
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (156 bp):
ACGCAAGAGGGACCGGACCGATCCTCGGCTTGTGCATTCTGCCTCTCCGCTGGCTGAGTGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCACCAGAACG
AGGGTTGCGACAGCAGGACCGACAGA
Found at i:35722734 original size:26 final size:26
Alignment explanation
Indices: 35722682--35722734 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35722672 GTTGACTTAG
*
35722682 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
35722708 GCATATGGAGTTCATTCCCAATTTAA
1 GCATACGGAGTTCATCCCCAATCTAA
35722734 G
1 G
35722735 ATCCGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:35723103 original size:159 final size:159
Alignment explanation
Indices: 35722708--35723111 Score: 381
Period size: 159 Copynumber: 2.5 Consensus size: 159
35722698 CCCAGTCTAA
* * * * * *
35722708 GCATATGGAGTTCATTCCCAATTTAAGATCCGACCGAACTGAGGGTTGCGACAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCCGACCGGACTGAGGGTTGTGGCAGTAGGATCGACA
* * * * ** * *
35722773 GCACGCA-GAGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTTTCTCTCCGATCGGCAAAGTGC
66 GCACGCAGGGGGGGATCGGGTCAATCCCTGGCTTGCGCATTATGCCTCTCCGATCAGCAAAGCGC
* ** *
35722837 CCGCATGCCCATTTTGTGGGTTGGCTTAG
131 CCGCACGCCCATTTCATGGGTTGACTTAG
* * * * * *
35722866 GCGTAGGGAGTTCATT-CCATGTCTAAG-CCCTAGCCAGACTGAGGGTTGTGGCAGT-GGCACCG
1 GCATATGGAGTTCATTCCCA-GTCTAAGATCCGA-CCGGACTGAGGGTTGTGGCAGTAGG-ATCG
* * * * * *
35722928 GCAACACGTAGAGGGGGACCGGGTCAAT-CCTCGGCTTGCGCATTATGCCTCTCC-AGTCAGCTT
63 ACAGCACGCAGGGGGGGATCGGGTCAATCCCT-GGCTTGCGCATTATGCCTCTCCGA-TCAGC-A
* *
35722991 AA-CGCCCGCACGCTCGTTTCATGGGTTGACTTAG
125 AAGCGCCCGCACGCCCATTTCATGGGTTGACTTAG
* * * *
35723025 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTATGGCAGTAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCCGACCGGACTGAGGGTTGTGGCAGTAGGATCGACA
35723090 GCACGCAGGGGGGGATCGGGTC
66 GCACGCAGGGGGGGATCGGGTC
35723112 GGTCCCTGCC
Statistics
Matches: 189, Mismatches: 47, Indels: 19
0.74 0.18 0.07
Matches are distributed among these distances:
157 8 0.04
158 50 0.26
159 122 0.65
160 9 0.05
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (159 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCCGACCGGACTGAGGGTTGTGGCAGTAGGATCGACA
GCACGCAGGGGGGGATCGGGTCAATCCCTGGCTTGCGCATTATGCCTCTCCGATCAGCAAAGCGC
CCGCACGCCCATTTCATGGGTTGACTTAG
Found at i:35723213 original size:26 final size:26
Alignment explanation
Indices: 35723184--35723236 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35723174 GTTGGCTTAG
*
35723184 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
35723210 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
35723236 G
1 G
35723237 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:35723365 original size:184 final size:185
Alignment explanation
Indices: 35723033--35723395 Score: 484
Period size: 184 Copynumber: 2.0 Consensus size: 185
35723023 AGGCATATGG
* * * * *
35723033 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTATGGCAGTAGGATCGACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTATGACAGCAGGATCGACAGCACGCAG
* * * ***
35723098 GGGGGGATCGGGTCGGTCCCTGCCATATGCATTCTGCCTCTCCGGTTGGCTGAGCCCCCGCACAG
66 GGGGGGACCGGGTCGATCCCTGCCATACGCATTCTGCCTCTCCGACCGGCTGAGCCCCCGCACAG
*
35723163 TCGTTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGA
131 TCATTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGA
*
35723218 AGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTACT-ACAGCAGGATCGACAGCACGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTA-TGACAGCAGGATCGACAGCACGCA
* * * *
35723282 -GGGGGGACCGGG-CTGAT-CCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCA
65 GGGGGGGACCGGGTC-GATCCCT-GCCATACGCATTCTGCCTCTCCGACCGGCTGAGCCCCCGCA
* *
35723344 C-GCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
128 CAG-TCATTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
35723396 CCCAGCCAGA
Statistics
Matches: 155, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
183 5 0.03
184 93 0.60
185 56 0.36
186 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (185 bp):
AGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTATGACAGCAGGATCGACAGCACGCAG
GGGGGGACCGGGTCGATCCCTGCCATACGCATTCTGCCTCTCCGACCGGCTGAGCCCCCGCACAG
TCATTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGA
Found at i:35723588 original size:26 final size:27
Alignment explanation
Indices: 35723547--35723601 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 27
35723537 CGTGAGTTGA
35723547 CTTAGGCATACAGAGTTCATCCCCAGT
1 CTTAGGCATACAGAGTTCATCCCCAGT
* * *
35723574 CTTA-GCATACGGAGTTCATTCCTAGT
1 CTTAGGCATACAGAGTTCATCCCCAGT
35723600 CT
1 CT
35723602 AAGATCAGAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (27 bp):
CTTAGGCATACAGAGTTCATCCCCAGT
Found at i:35724097 original size:159 final size:159
Alignment explanation
Indices: 35723574--35724121 Score: 507
Period size: 159 Copynumber: 3.5 Consensus size: 159
35723564 CATCCCCAGT
* * * * *
35723574 CTTA-GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAACAAGAT
1 CTTATGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAACAGGAT
* * * ** *
35723638 CGGCAGCACGCA-GGGGGGATCGAGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGGCCGGCTG
66 CGACAGCACGCAGGGGGGGATCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGGCTG
* * * * * *
35723702 AGTGCCCGCCCTCCCATTTCGTAGGTTGG
131 AGTACCCGCACGCTCGTTTCGTAGGTTGA
* * * ** * * *
35723731 CTTAGGCATATGGAGCTCATT-CCATGTCTAAG-CCCCAGCCGAACCGAGGGTTGTGGCAAC-GA
1 CTTATGCATATGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCAAGGGTTGCGGCAACAG-
* * * * * * * *
35723793 AATCGATAGCACGTAGTGGGGGACCGGGTCGAT-CCTCGGCTTGTGCATTATGCCTCTTCGGTTG
63 GATCGACAGCACGCAGGGGGGGATCGGGTCGATCCCT-GGCTTGTGCATTCTGCCTCTCCGGTCG
* * * * *
35723857 GCTCAGCAACCGCACGCTCGTTTCATGGGTTGA
127 GCTGAGTACCCGCACGCTCGTTTCGTAGGTTGA
* * * * * * *
35723890 CTTATGCATACT-GAGTTCGTTCCTAGTCTAAGATCGAACCAGATCAAGGGTTGTGGCAGCAGGA
1 CTTATGCATA-TGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAACAGGA
* * * *
35723954 TCGACAGCACGCAGGGGGGGATTGGGTCGATCCCTGACTTATGCATTCTGCCTCTCCGATCGGCT
65 TCGACAGCACGCAGGGGGGGATCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGGCT
35724019 GAGTACCCGCACGCTCGTTTCGTAGGTTGA
130 GAGTACCCGCACGCTCGTTTCGTAGGTTGA
* * * * *
35724049 CTTATGCATATGGAGTTGATTCCCAGTCTAAGAGCGGATCGGACCAAGGGTTGCGGCAGCATGAT
1 CTTATGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAACAGGAT
*
35724114 AGACAGCA
66 CGACAGCA
35724122 TTCTGCCTCT
Statistics
Matches: 305, Mismatches: 74, Indels: 22
0.76 0.18 0.05
Matches are distributed among these distances:
157 8 0.03
158 56 0.18
159 232 0.76
160 9 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
CTTATGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAACAGGAT
CGACAGCACGCAGGGGGGGATCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGGCTG
AGTACCCGCACGCTCGTTTCGTAGGTTGA
Found at i:35724207 original size:26 final size:26
Alignment explanation
Indices: 35724177--35724229 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35724167 GTTGTCTTAG
*
35724177 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGAAGTTTATTCCCA-GTCTAA
35724203 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTTATTCCCAGTCTAA
35724229 G
1 G
35724230 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTTATTCCCAGTCTAA
Found at i:35725052 original size:26 final size:27
Alignment explanation
Indices: 35725023--35725076 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
35725013 GTTGACTTAG
35725023 GCATA-CGGAGTACATCCCCAGTCTAA
1 GCATATCGGAGTACATCCCCAGTCTAA
* ** *
35725049 GCATATGGGAGTTTATTCCCAGTCTAA
1 GCATATCGGAGTACATCCCCAGTCTAA
35725076 G
1 G
35725077 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 5 0.22
27 18 0.78
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (27 bp):
GCATATCGGAGTACATCCCCAGTCTAA
Found at i:35726231 original size:158 final size:157
Alignment explanation
Indices: 35725939--35726431 Score: 414
Period size: 157 Copynumber: 3.1 Consensus size: 157
35725929 CCAAGTATAT
* * * * * * *
35725939 GGAGTTTATTCCCA-GTCTAAGATCAGATCAGACCGAGGGTTG-CAGCAGCAGGATCGAAAGCAC
1 GGAGTTCATT-CCATGTCTAAGACCAGACCAGACCAAGGGTTGTGA-CAGCAGGACCGACAGCAC
* * * * * * * * *
35726002 GTAGGGGGACTGGGCT-GATCC-CCATCTTGCGCATTCTACCTCTTCG-GCTGGCTGAGTGCTCA
64 CTAGGGGGAC-CGACTCGATCCTCGA-CTTGCGCATTATGCCTCTCCGATC-GGCTGAGTGCCCA
*
35726064 CACGCTTGTTTCGTGGGTTGGCTTAGGCAAGG
126 CACGCTTGTTTCGTGGGTTGGCTTAGGCAAGC
* * * * *
35726096 GGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCAAGGGTTGTGGCAGCTGGACCGGCAGCACC
1 GGAGTTCATTCCATGTCTAAG-ACCAGACCAGACCAAGGGTTGTGACAGCAGGACCGACAGCACC
* * *
35726160 TAGAGGGGGACCG-GTCGATCC-CTGACTTGCGCATTATGCCTCTCCGATCGGCTCAGTGCCCAA
65 T--AGGGGGACCGACTCGATCCTC-GACTTGCGCATTATGCCTCTCCGATCGGCTGAGTGCCCAC
* * *
35726223 ACGCTTGTTTCATGGGTTGACTTAGG-AATAC
127 ACGCTTGTTTCGTGGGTTGGCTTAGGCAA-GC
* *** * * * *
35726254 AGAGTTCATTCCCA-GTCTAAGATTGGACCAGACCAAGGGTTGTGATAGCAGGATCGATAGCACG
1 GGAGTTCATT-CCATGTCTAAGACCAGACCAGACCAAGGGTTGTGACAGCAGGACCGACAGCACC
* * * * * *
35726318 TAGGGGGACCGACTCGATCCTCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCATG
65 TAGGGGGACCGACTCGATCCTCGACTTGCGCATTATGCCTCTCCGATCGGCTGAGTGCCCACACG
*
35726383 CTCGTTTCGTGGGTTGGCTTAGGC-AGAC
130 CTTGTTTCGTGGGTTGGCTTAGGCAAG-C
35726411 GGAGTTCATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
35726432 GATATGAAGT
Statistics
Matches: 266, Mismatches: 54, Indels: 32
0.76 0.15 0.09
Matches are distributed among these distances:
156 16 0.06
157 127 0.48
158 110 0.41
159 13 0.05
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GGAGTTCATTCCATGTCTAAGACCAGACCAGACCAAGGGTTGTGACAGCAGGACCGACAGCACCT
AGGGGGACCGACTCGATCCTCGACTTGCGCATTATGCCTCTCCGATCGGCTGAGTGCCCACACGC
TTGTTTCGTGGGTTGGCTTAGGCAAGC
Done.