Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 395 of 402
Found at i:35726930 original size:158 final size:157
Alignment explanation
Indices: 35726634--35727129 Score: 421
Period size: 158 Copynumber: 3.1 Consensus size: 157
35726624 CTAAGAGTAA
* * * * *
35726634 GGAGTTCATTCCCA-GTCTAAG-ATCAAATCGGACC-AAGGGTTGCGACAGCAGGATC-AGCAGC
1 GGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAA-GGTTGCGACAGCAAGACCGA-CAGC
* * * * * * * * * * *
35726695 TCGCAGGGGGGACCGCGCCAATCCCCGGCTTGCGCATTTTGCCTCTCCGATCGGCTGAGCACCCA
63 ACGCA-GGGGGACCGAGTCGATCACCGACTTACGCATTATGCCTCTCCGAT-GGCTGAACGCCCG
* *
35726760 CACGCCCGTTTTGTGGGTTGGCTTAGGCATAG
126 CACGCTCGTTTTGTGGGTTGGCTTAGGCATAC
* * * * ** **
35726792 GGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGTAGCGGGACCGACAGCACG
1 GGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAAGGTTGCGACAGCAAGACCGACAGCACG
* * * *
35726856 TAGAGGGAGATCGAGTCGATCACTGACTTACGCATTATGCCTCTCCGATGGCTCAACGCCCGCAC
66 CAG-GGG-GACCGAGTCGATCACCGACTTACGCATTATGCCTCTCCGATGGCTGAACGCCCGCAC
* *
35726921 GCTCATTTTGTGGGTTGACTTAGGCATAC
129 GCTCGTTTTGTGGGTTGGCTTAGGCATAC
* * * * *
35726950 GGAGTTCATTCCCA-GTCTGAG-ATCAGACCGTACTGAAGGTTGCGACAGCAAGATCGACAGCAC
1 GGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAAGGTTGCGACAGCAAGACCGACAGCAC
* * * * * * ** * * *
35727013 GCAGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTACCTTTCCAGCCGGTTGAACGCCCGTAT
65 GCAGGGGGACCGAGTCGATCACCGACTTACGCATTATGCCTCTCC-GATGGCTGAACGCCCGCAC
*
35727078 GCTCGTTTCGTGGGTTGGCTTAGGCATAC
129 GCTCGTTTTGTGGGTTGGCTTAGGCATAC
35727107 GGAGTTCATTCCATGTCTAAGCA
1 GGAGTTCATTCCATGTCTAAGCA
35727130 TACGAAGTTC
Statistics
Matches: 267, Mismatches: 60, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
156 33 0.12
157 65 0.24
158 130 0.49
159 39 0.15
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAAGGTTGCGACAGCAAGACCGACAGCACG
CAGGGGGACCGAGTCGATCACCGACTTACGCATTATGCCTCTCCGATGGCTGAACGCCCGCACGC
TCGTTTTGTGGGTTGGCTTAGGCATAC
Found at i:35727138 original size:26 final size:26
Alignment explanation
Indices: 35727101--35727153 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35727091 GTTGGCTTAG
*
35727101 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
35727127 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
35727153 G
1 G
35727154 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:35727327 original size:26 final size:26
Alignment explanation
Indices: 35727297--35727349 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35727287 GTTGACTTAG
*
35727297 GCATACGGAATTCATCCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
* *
35727323 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
35727349 G
1 G
35727350 ATCAAATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAATTCATCCCCAGTCTAA
Found at i:35727650 original size:696 final size:692
Alignment explanation
Indices: 35725878--35727666 Score: 2194
Period size: 696 Copynumber: 2.6 Consensus size: 692
35725868 AACTGAGCGG
* * * *
35725878 CCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCCAAGTATATGGAG
1 CCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG-ATA-AGAG
* * * * * *
35725943 TTTATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCAGCAGCAGGATCGAAAGCACGTA-GG
64 TTCATTCCCAGTCTAAGATCAAATCGGACCGAGGGTTGCGGCAGCAGGATCGGAAGCACGCAGGG
* ** * * * * * * **
35726007 GGGACTGGGCTGATCCCCATCTTGCGCATTCTACCTCTTCGGCTGGCTGAGTGCTCACACGCTTG
129 GGGAC-GGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGGCCGGCTGAGCGCCCACACGCCCG
* * *
35726072 TTTCGTGGGTTGGCTTAGGCAAGGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTT
193 TTTCGTGGGTTGGCTTAGGCTA-GGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTT
* *
35726137 GTGGCAGCTGGACCGGCAGCACCTAGAGGGGGACC-GGTCGATCCCTGACTTGCGCATTATGCCT
257 GTGGCAGCGGGACCGGCAGCACC-AGAGGGAGACCGGGTCGATCCCTGACTTGCGCATTATGCCT
* ** * * *
35726201 CTCCGATCGGCTCAGTGCCCAAACGCTTGTTTCATGGGTTGACTTAGGAATACAGAGTTCATTCC
321 CTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
** * * * * *
35726266 CAGTCTAAGATTGGACCAGACCAAGGGTTGTGATAGCAGGATCGATAGCACGTAGGGGGACCGAC
386 CAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAAGATCGACAGCACGCAGGGGGACCGAC
* * * * * *
35726331 TCGATCCTCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCATGCTCGTTTCGTGGG
451 TCGATCCCCGACTTGCGCATTCTACCTCTCCGACCGGCTGAACGCCCGCATGCTCGTTTCGTGGG
* * *
35726396 TTGGCTTAGGCAGACGGAGTTCATTCCATGTCTAAGGATATGAAGTTCATTCTCAGTCTAAGATC
516 TTGGCTTAGGCAGACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
* * * * * * *
35726461 GGACTGGATCGAGGGTTGCGGTAGCAGGAGCAGCAGCATGATCAGCAGCACATAGGGAGGGATCG
581 GAACCGGACCGAGGGTTACGGTAGCAGGACCAGCAGCAGGATCAGCAGCACACAGGGAGGGATCG
*
35726526 AGCCGATCCCTAGCTTGTGCATTCTGCCTCTCCGACTGATTGAGTGC
646 AGCCGATCCCTAGCTTGTGCATTCTGCCTATCCGACTGATTGAGTGC
* * * * *
35726573 CTATACGCTCGTTTTATGGGTTGACTTAGGTATACGGAGTTCATCCCCAATCTAAGAGTAAGGAG
1 CCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGA-TAA-GAG
* * * * *
35726638 TTCATTCCCAGTCTAAGATCAAATCGGACCAAGGGTTGCGACAGCAGGATCAGCAGCTCGCAGGG
64 TTCATTCCCAGTCTAAGATCAAATCGGACCGAGGGTTGCGGCAGCAGGATCGGAAGCACGCAGGG
* * ** *
35726703 GGGACCGCGCCAATCCCCGGCTTGCGCATTTTGCCTCTCCGATCGGCTGAGCACCCACACGCCCG
129 GGGA-CGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGGCCGGCTGAGCGCCCACACGCCCG
*
35726768 TTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTT
193 TTTCGTGGGTTGGCTTAGGC-TAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTT
* * * * * * *
35726833 GTGGTAGCGGGACCGACAGCACGTAGAGGGAGATCGAGTCGATCACTGACTTACGCATTATGCCT
257 GTGGCAGCGGGACCGGCAGCAC-CAGAGGGAGACCGGGTCGATCCCTGACTTGCGCATTATGCCT
* * **
35726898 CTCCGAT-GGCTCAACGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCC
321 CTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
* *
35726962 CAGTCTGAGATCAGACC-GTACTGAA-GGTTGCGACAGCAAGATCGACAGCACGCAGGGGGACCG
386 CAGTCTAAGATCAGACCAG-AC-CAAGGGTTGCGACAGCAAGATCGACAGCACGCAGGGGGACCG
** * * *
35727025 GGTCGATCCCCGACTTGCGCATTCTACCTTTCC-AGCCGGTTGAACGCCCGTATGCTCGTTTCGT
449 ACTCGATCCCCGACTTGCGCATTCTACCTCTCCGA-CCGGCTGAACGCCCGCATGCTCGTTTCGT
*
35727089 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
513 GGGTTGGCTTAGGCAGACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
* * * * *
35727154 ATCGAACCGGACCGAGGGTTATGGTAGCAGGACCAGCAGTAGGATCGGTAGCATACAGGGAGGGA
578 ATCGAACCGGACCGAGGGTTACGGTAGCAGGACCAGCAGCAGGATCAGCAGCACACAGGGAGGGA
* * *
35727219 TCGGGCCGATCCCTAGCTTGTGCATTCTG-CTATCC-AGTCGGTTGAGTGC
643 TCGAGCCGATCCCTAGCTTGTGCATTCTGCCTATCCGACT-GATTGAGTGC
* * * *
35727268 CCGCATGCTTGTTTCATGGGTTGACTTAGGCATACGGAATTCATCCCCAGTCTAAGCATACAGAG
1 CCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG-ATA-AGAG
* * * *
35727333 TTCATTCCCAGTCTAAGATCAAATTGGATCGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAGGG
64 TTCATTCCCAGTCTAAGATCAAATCGGACCGAGGGTTGCGGCAGCAGGATCGGAAGCACGCAGGG
* * * * *
35727398 GGGATCGGGCCGATCCCTGGCTTACGCATTTTGCCTCTCCGGCCGGTTGAGCGCCCGCACACCCG
129 GGGA-CGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGGCCGGCTGAGCGCCCACACGCCCG
35727463 TTTCGTGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTT
193 TTTCGTGGGTTGGCTTAGGC-TAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTT
* * * * * * *
35727528 GTGGCAGCGGGACTGGCAGAACACAAAGGGTGACCGGGCCGATCCC-CAGCTTGCGCATTCTGCC
257 GTGGCAGCGGGACCGGCAGCAC-CAGAGGGAGACCGGGTCGATCCCTGA-CTTGCGCATTATGCC
* * * * * *
35727592 TCTCCGGTCGACTGAGCACCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-
320 TCTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
35727656 CCATGTCTAAG
385 CCA-GTCTAAG
35727667 CATACGGAGT
Statistics
Matches: 923, Mismatches: 155, Indels: 31
0.83 0.14 0.03
Matches are distributed among these distances:
694 4 0.00
695 403 0.44
696 479 0.52
697 37 0.04
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (692 bp):
CCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATAAGAGTT
CATTCCCAGTCTAAGATCAAATCGGACCGAGGGTTGCGGCAGCAGGATCGGAAGCACGCAGGGGG
GACGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGGCCGGCTGAGCGCCCACACGCCCGTTT
CGTGGGTTGGCTTAGGCTAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGG
CAGCGGGACCGGCAGCACCAGAGGGAGACCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCG
ATCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
TAAGATCAGACCAGACCAAGGGTTGCGACAGCAAGATCGACAGCACGCAGGGGGACCGACTCGAT
CCCCGACTTGCGCATTCTACCTCTCCGACCGGCTGAACGCCCGCATGCTCGTTTCGTGGGTTGGC
TTAGGCAGACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACC
GGACCGAGGGTTACGGTAGCAGGACCAGCAGCAGGATCAGCAGCACACAGGGAGGGATCGAGCCG
ATCCCTAGCTTGTGCATTCTGCCTATCCGACTGATTGAGTGC
Found at i:35727670 original size:26 final size:26
Alignment explanation
Indices: 35727640--35727692 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35727630 GTTGGCTTAG
35727640 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
35727666 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35727692 G
1 G
35727693 AGTTTAATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35728399 original size:158 final size:159
Alignment explanation
Indices: 35728080--35728419 Score: 364
Period size: 158 Copynumber: 2.1 Consensus size: 159
35728070 GTCTAAGTAC
* * *
35728080 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCGGGACTGGCAGCAC
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAACAGGACTGCCAGCAC
* * * * * *
35728145 GTAGAGGGGGACCGGGCCGATCTCTGACTTGCGCATTATGCCTCTTCAGTCGGCTCAGCGCCCGC
66 GTAGAGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCAGCCGACTCAGCGCCCGC
35728210 ACGCTCCTTTCATGGGTTGACTGAAGCAT
131 ACGCTCCTTTCATGGGTTGACTGAAGCAT
* ** * * * *
35728239 ACGGAGTTCATTCCCAGTTTAAGATTGGATCAGACTGAA-GGTTGTGACAACAGGATTGCCAGCA
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-CAAGGGTTGCGACAACAGGACTGCCAGCA
* * ** * * *
35728303 CGTAGA-GGGGATCGGGTCGATCCCCGGTTTACGCATTTTGCCTCTCC-GACCGACTGAGTGCCC
65 CGTAGAGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCAG-CCGACTCAGCGCCC
* * * * *
35728366 GCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
129 GCACGCTCCTTTCATGGGTTGACTGAAGCAT
*
35728397 ACGGAGTTC-TTTCCATGTCTAAG
1 ACGGAGTTCATTCCCA-GTCTAAG
35728420 CCCCAGTCGG
Statistics
Matches: 148, Mismatches: 30, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
157 6 0.04
158 83 0.56
159 57 0.39
160 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAACAGGACTGCCAGCAC
GTAGAGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCAGCCGACTCAGCGCCCGC
ACGCTCCTTTCATGGGTTGACTGAAGCAT
Found at i:35728612 original size:26 final size:26
Alignment explanation
Indices: 35728576--35728628 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35728566 CTTGACTTAG
35728576 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* **
35728602 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
35728628 G
1 G
35728629 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:35728960 original size:26 final size:26
Alignment explanation
Indices: 35728930--35728982 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35728920 GTTGACTTAG
35728930 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
35728956 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
35728982 G
1 G
35728983 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:35729350 original size:721 final size:720
Alignment explanation
Indices: 35728233--35729893 Score: 1948
Period size: 721 Copynumber: 2.3 Consensus size: 720
35728223 GGGTTGACTG
* * * * * * *
35728233 AAGCATACGGAGTTCATTCCCAGTTTAAGATTGGATCAGACTGAAGGTTGTGACAACAGGATTGC
1 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCAGGATAGA
* * * * * * * * *
35728298 CAGCACGTAGAGGGGATCGGGTCGATCCCCGGTTTACGCATTTTGCCTCTCCGACCGACTGAGTG
66 CAGCACGCAGAGGGGATCGAGCCGATCCCCGG-CTACGCATTCTGCCTCTCTGGCCGGCTGAGCG
* * *
35728363 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCTTTCCATGTCTAAGCCCCAGTC
130 -CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * * * * * ** * * * *
35728428 GGACCAAGGGTTGTGGTAGCAGGGCTAGCAGTGGGATTGGTAGCCCGTAGAGGGGGATCGGGCTG
194 GGACCAAGGGTTATGATAGCAGGACCAGCAGCGAGATCGACAGCACATAGAGGGGGACCGGGCTA
* * * * * * * * *
35728493 ATTCCCGGCTTGCGCATTATGCCTCTTCAATCGGCTTTTCGATCGACTGAGCACCCGTATGCTCA
259 ATGCCCGACTTGCGCATTATGCCTCTCCAACCGCCTCTACGATCGACTGAGCACCCGCACGCTCA
* *
35728558 TTTCGTGGCTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTGCCAG
324 TTTCGTGGCTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAA
* *
35728623 TCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAGGATCGATAGCACGTAGGGGGGACCAGGCC
389 TCTAAGATCAGACCAAACCGAGGGTTACGACAACAGGATCGATAGCACGTAGGGGGGACCAGGCC
* ** *
35728688 GATCCCTAGCTTGCGCATTCTACCTCTCAGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTT
454 GATCCCTAGCTTACGCATTCTACCTCTCAGGCCGACTGAGCGCCCGCACGCTCGTTACATGGGTT
* * * *
35728753 GGCTTAGGCATACGAAGTTCATTCCATGTTTAAGCCCTAGCCAGACTGAGGGTTGTGGCAGCAGG
519 AGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAGCAGA
* * * * *
35728818 ACCGACAGCGGGATGGGCAGCAAGCAGAGGGGGACCGGGCTGATCC-CTGGCTTGCGCATTA-T-
584 ACCAACAGCGAGATCGGCAGCAAGCAGAGGGGG--CGGGCTAATCCTC-GGCTTGCACATTACTC
* * *
35728880 GCC-ATCCGACCGGTTGAGCACCTGAATGCTTGTTTCATGGGTTGACTTAGGCATACAGAGTTCA
646 GCCTATCCGACCGGTTGAGCACCTGAACGCTCGTTTCATGGGTTGACTTAGACATACAGAGTTCA
*
35728944 TTCCCAGTCT
711 TCCCCAGTCT
* * *
35728954 AAGCATACGGTGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGACAGCAGGATAGG
1 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCAGGATAGA
* * * * *
35729019 TAGCATGCAGGGGGGATCGAGCCGATCCCCGGCTAGCACATTCTGCCTCTCTGGCTGGCTGAGCG
66 CAGCACGCAGAGGGGATCGAGCCGATCCCCGGCTA-CGCATTCTGCCTCTCTGGCCGGCTGAGCG
* *
35729084 CCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGTGTTCATTCCATGTCTAAGCCCTAGCC
130 CC-GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
* *
35729149 GGACCGAGGGTTATGATAGCAGGACCGGCAGCGAG-TCGACAGCACATAGAGGGGGACCGGGCTA
194 GGACCAAGGGTTATGATAGCAGGACCAGCAGCGAGATCGACAGCACATAGAGGGGGACCGGGCTA
* ** ** * * *
35729213 ATGCTCGACTTTTGCATTATGCCTCTCCGGCCAGCCTCTACGATCGGCTGAGCGCCCGCACGCTT
259 ATGCCCGACTTGCGCATTATGCCTCTCCAACC-GCCTCTACGATCGACTGAGCACCCGCACGCTC
* * * * *
35729278 GTTTCGTGGGTTGACTTAGGCATGCAGAGTTCATCCCCAGTCTAAGCCTATGGAGTTCATTCCCA
323 ATTTCGTGGCTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
* ** ** * * *
35729343 ATCTAAGATTAGGTCGGACTGAGGGTTACGGCAACAGGATCGATAGCACGTAGGGGGGACCGGGC
388 ATCTAAGATCAGACCAAACCGAGGGTTACGACAACAGGATCGATAGCACGTAGGGGGGACCAGGC
* * * *
35729408 CGATCCCTGGCTTACGCATTCTACCTCTCTGGTCGACTGAGCGCCCGCACGCTCGTTACGTGGGT
453 CGATCCCTAGCTTACGCATTCTACCTCTCAGGCCGACTGAGCGCCCGCACGCTCGTTACATGGGT
* * * * * *
35729473 TAGCTTAGGCATATGGAGTTCATTGCATGTCTAAGCCTTAGCCGGACCGAGGGTTGTGGTAGCAG
518 TAGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAGCAG
* * *
35729538 AACCAACAGCGAGATCGGCAGCACGCAGAGGGGGCTGGCTAATCTTCGGCTTGCACATTATGCCT
583 AACCAACAGCGAGATCGGCAGCAAGCAGAGGGGGCGGGCTAATCCTCGGCTTGCACATTA-----
* * *
35729603 CTTCGGTCGGCCTCTCCGACCGGTTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGACATA
643 ---C--TC-GCCTATCCGACCGGTTGAGCACCTGAACGCTCGTTTCATGGGTTGACTTAGACATA
*
35729668 CGGAGTTCATCCCCAGTCT
702 CAGAGTTCATCCCCAGTCT
* * * * * * * *
35729687 AACCATATGGAGTTCATTCCCAATCTAAGGTCAGATCAGACCGAGGGTTGCGATAGCAGGATCGA
1 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCAGGATAGA
* ** *
35729752 CAGCACGCAGAGGGGATC-AGTCTGATCCCCAACTTACGCATTCTACCTCTCTGGCCGGCTGAGC
66 CAGCACGCAGAGGGGATCGAG-CCGATCCCCGGC-TACGCATTCTGCCTCTCTGGCCGGCTGAGC
* *
35729816 GTCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
129 G-CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
35729881 CGGACCAAGGGTT
193 CGGACCAAGGGTT
35729894 GTAGCAGCAG
Statistics
Matches: 783, Mismatches: 136, Indels: 30
0.83 0.14 0.03
Matches are distributed among these distances:
719 20 0.03
720 50 0.06
721 467 0.60
730 1 0.00
732 5 0.01
733 236 0.30
734 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (720 bp):
AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCAGGATAGA
CAGCACGCAGAGGGGATCGAGCCGATCCCCGGCTACGCATTCTGCCTCTCTGGCCGGCTGAGCGC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
ACCAAGGGTTATGATAGCAGGACCAGCAGCGAGATCGACAGCACATAGAGGGGGACCGGGCTAAT
GCCCGACTTGCGCATTATGCCTCTCCAACCGCCTCTACGATCGACTGAGCACCCGCACGCTCATT
TCGTGGCTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATC
TAAGATCAGACCAAACCGAGGGTTACGACAACAGGATCGATAGCACGTAGGGGGGACCAGGCCGA
TCCCTAGCTTACGCATTCTACCTCTCAGGCCGACTGAGCGCCCGCACGCTCGTTACATGGGTTAG
CTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAGCAGAAC
CAACAGCGAGATCGGCAGCAAGCAGAGGGGGCGGGCTAATCCTCGGCTTGCACATTACTCGCCTA
TCCGACCGGTTGAGCACCTGAACGCTCGTTTCATGGGTTGACTTAGACATACAGAGTTCATCCCC
AGTCT
Found at i:35729698 original size:26 final size:26
Alignment explanation
Indices: 35729664--35729714 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
35729654 TTGACTTAGA
*
35729664 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCCAATCTAAC
* *
35729690 CATATGGAGTTCATTCCCAATCTAA
1 CATACGGAGTTCATCCCCAATCTAA
35729715 GGTCAGATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAATCTAAC
Found at i:35729749 original size:366 final size:366
Alignment explanation
Indices: 35728236--35729905 Score: 1731
Period size: 367 Copynumber: 4.6 Consensus size: 366
35728226 TTGACTGAAG
* ** * * * * * **
35728236 CATACGGAGTTCATTCCCAGTTTAAGATTGGATCAGACTGAAGGTTGTGACAACAGGATTGCCAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGATAG
* * * * * * * * *
35728301 CACGTAGAGGGGATCGGGTCGATCCCCGGTTTACGCATTTTGCCTCTCCGACCGACTGAGTGCCC
66 CACGTAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCTGGCCGGCTGAGCGCCC
* * * *
35728366 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCTTTCCATGTCTAAGCCCCAGTCGGA
131 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGA
* * * * * * * * * * *
35728431 CCAAGGGTTGTGGTAGCAGGGCTAGCAGTGGGATTGGTAGCCCGTAGAGGGGGATCGGGCTGATT
196 CCGAGGGTTGTGGTAGCAGGACCAACAGCGAGATCGGCAGCACGCAGAGGGGGA-CGGGCT-AAT
** * * * * * * *
35728496 CCCGGCTTGCGCATTATGCCTCTTCAATCGG-CTTTTCGATCGACTGAGCACCCGTATGCTCATT
259 CCCGGCTTGCGCATTATGCCTCTTCGGTCGGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTT
* * *
35728560 TCGTGGCTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
324 TCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAC
* * *
35728603 CATACGGAGTTCATTGCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAGGATCGATAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGATAG
* * ** * * *
35728668 CACGTAGGGGGGACCAGGCCGATCCCTAGCTTGCGCATTCTACCTCTCAGGCCGGTTGAGCGCCC
66 CACGTAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCTGGCCGGCTGAGCGCCC
* * *
35728733 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTTTAAGCCCTAGCCAGA
131 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGA
* * * * * * *
35728798 CTGAGGGTTGTGGCAGCAGGACCGACAGCGGGATGGGCAGCAAGCAGAGGGGGACCGGGCTGATC
196 CCGAGGGTTGTGGTAGCAGGACCAACAGCGAGATCGGCAGCACGCAGAGGGGGA-CGGGCTAATC
* * * * * *
35728863 CCTGGCTTGCGCATTA-----------T--GCC-ATCCGACCGGTTGAGCACCTGAATGCTTGTT
260 CC-GGCTTGCGCATTATGCCTCTTCGGTCGGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTT
* *
35728914 TCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
324 TCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAC
* * * * * *
35728957 CATACGGTGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGACAGCAGGATAGGTAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGATAG
* * * * * *
35729022 CATGCAGGGGGGATCGAGCCGATCCCCGGC-TAGCACATTCTGCCTCTCTGGCTGGCTGAGCGCC
66 CACGTAGGGGGGATCGGGCCGATCCCCGGCTTA-CGCATTCTACCTCTCTGGCCGGCTGAGCGCC
* *
35729086 TGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGTGTTCATTCCATGTCTAAGCCCTAGCCGG
130 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGG
* * ** * **
35729151 ACCGAGGGTTATGATAGCAGGACCGGCAGCGAG-TCGACAGCACATAGAGGGGGACCGGGCTAAT
195 ACCGAGGGTTGTGGTAGCAGGACCAACAGCGAGATCGGCAGCACGCAGAGGGGGA-CGGGCTAAT
* * ** * * * * * * *
35729215 GCTCGACTTTTGCATTATGCCTCTCCGGCCAGCCTCTACGATCGGCTGAGCGCCCGCACGCTTGT
259 -CCCGGCTTGCGCATTATGCCTCTTCGGTCGGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGT
* *
35729280 TTCGTGGGTTGACTTAGGCATGCAGAGTTCATCCCCAGTCTAAGC
323 TTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA-C
* * * * * * * * *
35729325 C-TATGGAGTTCATTCCCAATCTAAGATTAGGTCGGACTGAGGGTTACGGCAACAGGATCGATAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGATAG
* * * *
35729389 CACGTAGGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTACCTCTCTGGTCGACTGAGCGCCC
66 CACGTAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCTGGCCGGCTGAGCGCCC
* * * * * *
35729454 GCACGCTCGTTACGTGGGTTAGCTTAGGCATATGGAGTTCATTGCATGTCTAAGCCTTAGCCGGA
131 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGA
* *
35729519 CCGAGGGTTGTGGTAGCAGAACCAACAGCGAGATCGGCAGCACGCAGAGGGGG-CTGGCTAATCT
196 CCGAGGGTTGTGGTAGCAGGACCAACAGCGAGATCGGCAGCACGCAGAGGGGGACGGGCTAATC-
* * * * *
35729583 TCGGCTTGCACATTATGCCTCTTCGGTCGGCCTCTCCGACCGGTTGAGCGCCTGCACGCTCGTTT
260 CCGGCTTGCGCATTATGCCTCTTCGGTCGGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTT
* *
35729648 CATGGGTTGACTTAGACATACGGAGTTCATCCCCAGTCTAAC
325 CATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAC
* * * * *
35729690 CATATGGAGTTCATTCCCAATCTAAGGTCAGATCAGACCGAGGGTTGCGATAGCAGGATCGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGATAG
* * * * * ** *
35729755 CACGCAGAGGGGATCAGTCTGATCCCCAACTTACGCATTCTACCTCTCTGGCCGGCTGAGCGTCC
66 CACGTAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCTGGCCGGCTGAGCGCCC
* * *
35729820 GCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
131 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGA
* * *
35729885 CCAAGGGTTGTAGCAGCAGGA
196 CCGAGGGTTGTGGTAGCAGGA
35729906 TCAGCAGCAC
Statistics
Matches: 1071, Mismatches: 209, Indels: 47
0.81 0.16 0.04
Matches are distributed among these distances:
353 36 0.03
354 257 0.24
355 1 0.00
356 1 0.00
365 3 0.00
366 285 0.27
367 468 0.44
368 20 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (366 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGATAG
CACGTAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGA
CCGAGGGTTGTGGTAGCAGGACCAACAGCGAGATCGGCAGCACGCAGAGGGGGACGGGCTAATCC
CGGCTTGCGCATTATGCCTCTTCGGTCGGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTC
ATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAC
Found at i:35730163 original size:158 final size:157
Alignment explanation
Indices: 35729690--35730190 Score: 454
Period size: 158 Copynumber: 3.2 Consensus size: 157
35729680 CCAGTCTAAC
* * * * *
35729690 CATATGGAGTTCATTCCCA-ATCTAAGGTCAGATCAGACCGAGGGTTGC-GATAGCAGGATCGAC
1 CATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGCAG-CAGCAGGATCGAC
* * * * * ** * * * * *
35729753 AGCACGCAGAGGGGATCAGTCTGATCCCCAACTTACGCATTCTACCTCTCTGGCCGGCTGAGCGT
64 AGCACGTAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTC-CGCCAGCTGAGCGC
* *
35729818 CCGCACGCCCGTTTCATGGGTTGGCTTAGG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAGG
* ** * * *
35729848 CATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCAAGGGTTGTAGCAGCAGGATC-AGC
1 CATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGA-C
* * * * * * * * * * * *
35729911 AGCACGTAGAGGGGGGCTGAGCTGATCCCTGGCTTGTGCATTATGCCTCTTCGGCTAGGTCAACC
64 AGCACGTAG-GGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTC-TCCGCCAGCTGAGCG
* * * *
35729976 CCCCCACGCTTGTTTCGCGGGTTGACTTAGG
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
* * *
35730007 CATACGTAGTTCATTCCCA-GTCTAAGATCAGACCAGATCGAGGGTTGCAGCAGCAGGATCGATA
1 CATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACA
* * * *
35730071 GCATGTAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCAGTCAGCTGAGCGCC
65 GCACGTAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCC-GCCAGCTGAGCGCC
35730136 CGCACGCTCGTTTCGTGGGTTGGCTTAGG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAGG
35730165 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATGTCTAAG
35730191 CATACGGAGG
Statistics
Matches: 265, Mismatches: 67, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
157 9 0.03
158 138 0.52
159 112 0.42
160 6 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
CATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAG
CACGTAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGCCAGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAGG
Found at i:35730204 original size:26 final size:26
Alignment explanation
Indices: 35730164--35730216 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35730154 GTTGGCTTAG
*
35730164 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGGTCATTCCCA-GTCTAA
35730190 GCATACGGAGGTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
35730216 G
1 G
35730217 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:35730914 original size:26 final size:26
Alignment explanation
Indices: 35730884--35730936 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35730874 GTTGACTTAG
35730884 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
35730910 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35730936 G
1 G
35730937 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35731273 original size:159 final size:158
Alignment explanation
Indices: 35730910--35731273 Score: 360
Period size: 159 Copynumber: 2.3 Consensus size: 158
35730900 CCCAGTCTAA
* *
35730910 GCATATGGAGTTCATTCCCAGTCTAAGATCAGA-TCGGACCGAGGGTTACGACAGCATGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTACGACAGCATGACCGGC
* * * * * ** * * *
35730974 AGCATGTAAGGGGGACCTAGTCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGC
65 AGCATGCAAAGGGGACCTAGGCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGACTCAGCAC
* * * *
35731039 CTGCATGCCCATTTTGTGGGTTGGCTTAG
130 CAGCAAGCCCATTTCGTGGGTTGACTTAG
* ** *** * * *
35731068 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAAACCGAGGGTTATGGCAGTGA-GACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGACCGAGGGTTACGACAG-CATGACCG
* * **
35731130 GCAGCATGCAGAAGGGGA-TTGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGACTCA
63 GCAGCATGCA-AAGGGGACCTAGGC-GATCCCCAGCTTGCGCATTATGCCTCTCCGACCGACTCA
*
35731194 GCACCAGCAAGCTCATTTCGTGGGTTGACTTAG
126 GCACCAGCAAGCCCATTTCGTGGGTTGACTTAG
*
35731227 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTT
35731274 GTGGTAACAG
Statistics
Matches: 162, Mismatches: 36, Indels: 15
0.76 0.17 0.07
Matches are distributed among these distances:
157 3 0.02
158 56 0.35
159 100 0.62
160 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGACAGCATGACCGGCA
GCATGCAAAGGGGACCTAGGCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGACTCAGCACC
AGCAAGCCCATTTCGTGGGTTGACTTAG
Found at i:35731782 original size:26 final size:26
Alignment explanation
Indices: 35731752--35731804 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35731742 GTTGACTTAG
*
35731752 GCATACGGAGTTCA-TCCCAAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
35731778 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
35731804 G
1 G
35731805 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:35732282 original size:26 final size:26
Alignment explanation
Indices: 35732253--35732305 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35732243 GTTGGCTTAG
35732253 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
35732279 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35732305 G
1 G
35732306 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35733167 original size:26 final size:26
Alignment explanation
Indices: 35733117--35733169 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35733107 GTTGGCTTAG
*
35733117 GCATACGGAGTTCATTCCTTATCTAA
1 GCATACGGAGTTCATTCCTCATCTAA
*
35733143 GCATATGGAGTTCATTCC-CAGTCTAA
1 GCATACGGAGTTCATTCCTCA-TCTAA
35733169 G
1 G
35733170 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTCATCTAA
Found at i:35733880 original size:26 final size:26
Alignment explanation
Indices: 35733850--35733902 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35733840 GTTGACTTAG
*
35733850 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
35733876 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
35733902 G
1 G
35733903 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:35734369 original size:26 final size:26
Alignment explanation
Indices: 35734339--35734390 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35734329 TTGGCTTAGA
*
35734339 CATACTGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
35734365 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
35734391 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:35735071 original size:159 final size:158
Alignment explanation
Indices: 35734829--35735335 Score: 460
Period size: 159 Copynumber: 3.2 Consensus size: 158
35734819 GGGCTCGGGT
* * * * * * *
35734829 CGATCCACGGCTTGCGCGTTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCGTTTCATGGGT
1 CGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * ** *
35734894 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGGTAGCGG
66 TGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGACCCAACCGGACCGAGGGTTGCAGTAGCAG
* *
35734959 GACCGACAGCACGCTGAAGGG-GACCGGGC
130 GACCGACAGCACGCAG-AGGGCGACCGAGC
* ** * * * *
35734988 TGATCCTCGGCTTGCGCATTATGATTCTTCGGCCGGCTTAGCGCTCGCACGCTCATTTCGTGGGT
1 CGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGT
* * ** *
35735053 TGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCAGTAGCAG
66 TGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGACCCAACCGGACCGAGGGTTGCAGTAGCAG
** *
35735118 GACCGGTAGCACGCAGAGGGCGATCGAGC
130 GACCGACAGCACGCAGAGGGCGACCGAGC
* ** * * * * *
35735147 CAATCCTTAGTTTGCGCATTATGCCTCTCCAGTCAGCTCAGCACCCGCACGCTCGTTTCGTGGGT
1 CGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGT
* * ** ** * * *
35735212 TGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGGTCGAGAGTTGCAGCAACAG
66 TGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGACCCAACCGGACCGAGGGTTGCAGTAGCAG
* * * * * *
35735277 GATCGATAGCAGGCAG-GGGGGACAGGGC
130 GACCGACAGCACGCAGAGGGCGACCGAGC
* *
35735305 TGATCCTCGACTTGCGCATTATGCCTCTCCG
1 CGATCCTCGGCTTGCGCATTATGCCTCTCCG
35735336 CTGGCCTATC
Statistics
Matches: 281, Mismatches: 65, Indels: 5
0.80 0.19 0.01
Matches are distributed among these distances:
158 36 0.13
159 242 0.86
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
CGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCAGTCTAAGACCCAACCGGACCGAGGGTTGCAGTAGCAGG
ACCGACAGCACGCAGAGGGCGACCGAGC
Found at i:35735433 original size:26 final size:26
Alignment explanation
Indices: 35735397--35735468 Score: 99
Period size: 26 Copynumber: 2.8 Consensus size: 26
35735387 TAGGCAAACT
35735397 GAGTTCATCCCCAGTCTAAGCATACA
1 GAGTTCATCCCCAGTCTAAGCATACA
* * *
35735423 GAGTTCATCCCTAGTCTAGGCATACG
1 GAGTTCATCCCCAGTCTAAGCATACA
* *
35735449 GAGTTCATTCCCAGTGTAAG
1 GAGTTCATCCCCAGTCTAAG
35735469 ATCAGATCGG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GAGTTCATCCCCAGTCTAAGCATACA
Found at i:35735952 original size:26 final size:26
Alignment explanation
Indices: 35735916--35735968 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35735906 GTTGGCTTAC
*
35735916 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
35735942 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
35735968 G
1 G
35735969 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:35737141 original size:158 final size:157
Alignment explanation
Indices: 35736670--35737154 Score: 499
Period size: 158 Copynumber: 3.1 Consensus size: 157
35736660 AAGAGGATGA
* * * * * *
35736670 AGTTCATTCCCAGTCTAAGATAAGACCAAACCGAAGGTTGCGGTAGCAGGATTGGCAGCACGCAG
1 AGTTCATTCCCAGTCTAACATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAG
* * * * * * *
35736735 GGGGGATCGGGCTGATCCCCGACTTGTGCATTCTGCCTCTCCGGGCGACTGAGCGCCCGCACGCC
66 GGGGGATC-GGCCGATCCCTGGCTTGTGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCT
*
35736800 CATTTCGTGGGTTGGCTTAGGCATAGGG
130 CATTTCGTGGGTTGGCTTAGGCATACGG
** * * *
35736828 AGTTCATT-CCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGTAGC-GGAACCGACAGCACG
1 AGTTCATTCCCA-GTCTAA-CATCAGACCAGACCGAGGGTTGCGGTAGCAGG-ATCGACAGCACG
* * * * * *
35736890 CAGAGGGGGATCGAGCCGATCCCTAGCTTGTGCATTATGCCTCTTCGGCCTGCTCAGTGCCCGGA
63 CAG-GGGGGATCG-GCCGATCCCTGGCTTGTGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCA
* * *
35736955 CGCTCATGTCGTGGGTTGACTTATGCATACGG
126 CGCTCATTTCGTGGGTTGGCTTAGGCATACGG
* ** *
35736987 AGTTCATTCCCAGTCTAACATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGTAG
1 AGTTCATTCCCAGTCTAACATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAG
* * ** ** * * *
35737052 GGGGGACCAGGTCGATCATTGGCTTACGCATTCTGCTTCTTCGGTCGGCTGAGCGCCCGTACGCT
66 GGGGGATC-GGCCGATCCCTGGCTTGTGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCT
*
35737117 CATTTCGTGGGTTGGCTTAGGCATACAG
130 CATTTCGTGGGTTGGCTTAGGCATACGG
*
35737145 AGTTTATTCC
1 AGTTCATTCC
35737155 ATGACTAAGC
Statistics
Matches: 262, Mismatches: 56, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
157 5 0.02
158 130 0.50
159 122 0.47
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
AGTTCATTCCCAGTCTAACATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAG
GGGGGATCGGCCGATCCCTGGCTTGTGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTC
ATTTCGTGGGTTGGCTTAGGCATACGG
Found at i:35737533 original size:25 final size:26
Alignment explanation
Indices: 35737505--35737556 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
35737495 GTTGACTTAG
35737505 GCATACGAAGTTCA-TCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
35737530 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
35737556 G
1 G
35737557 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:35737700 original size:354 final size:355
Alignment explanation
Indices: 35737041--35737873 Score: 973
Period size: 354 Copynumber: 2.3 Consensus size: 355
35737031 AGCAGGATCG
*** * *
35737041 ACAGCACGTAG-GGGGGACCAGG-TCGATCATTGGCTTACGCATTCTGCTTCTTCGGTCGGCTGA
1 ACAGCACGTAGAGGGGGACCAGGCT-GATCCCCGGCTTACGCATTCTGCCTCTTCGGTCGGTTGA
* * * * *
35737104 GCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATAC-AGAGTTTATTCCATGACTAAGCATA
65 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGA-AGTTCATCCCA-GTCTAAGCATA
**
35737168 CGGAGTTCATTCCCAGTCTAAGATTGGACCGGAGTGAGGGTTACGGTGGCAGGACCAGCAGCAGG
128 CGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTT---GTGGCAGGA-CA-CAGCAGG
* *
35737233 ATCGGTAGCACGCAGGGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCGGGCCGGT
188 ATCGGTAGCACCCAGGGGGGGATCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCGGGCCGGT
* * *
35737298 TGAGCGCCCACACGCTTGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCC
253 TGAGCACCCACACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
*
35737363 CCAGCCAGACCGAGGGATGTGGCAGCAGGATCGGCAGC
318 CCAGCCAGACCGAGGGATGTGGCAGCAGGACCGGCAGC
* * *
35737401 GAGATCGGTAGCACGTAGAGGGGGACCAGGCTGATCCCCGGCTTATGCATTATGCCTCTCCGGTC
1 ---A-C---AGCACGTAGAGGGGGACCAGGCTGATCCCCGGCTTACGCATTCTGCCTCTTCGGTC
*
35737466 GGTTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCAGTCTAAG
59 GGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCAGTCTAAG
*
35737531 CATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGG-T-T-GC-GG-CA-A-CAGGA
124 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGGACACAGCAGGA
* * * * * *
35737589 TCGGTAGCACCCA-GGGGGGAGT-GAGCCGATCCCTGGCTTACGTATTTTGCCTTTTC-GGTCGG
189 TCGGTAGCACCCAGGGGGGGA-TCGAGCCGATCCCCGACTTACGCATTCTGCC-TCTCGGGCCGG
*
35737651 TTGAGCACCCAGACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
252 TTGAGCACCCACACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
* ** * *
35737716 CCTAGTTAGACCGAGGGTTGTGGCAGCGGGACCGGCAGC
317 CCCAGCCAGACCGAGGGATGTGGCAGCAGGACCGGCAGC
* * * * * *
35737755 ACA-CA---A-AGAGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGTCGGTTCAG
1 ACAGCACGTAGAGGGGGACCAGGCTGATCCCCGGCTTACGCATTCTGCCTCTTCGGTCGGTTGAG
* * * *
35737815 CGCCCGCACGCTCATTTCATGGGTTGACTTATGCATTCGAAGTTCATTCCCAATCTAAG
66 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCA-TCCCAGTCTAAG
35737874 ATCAGACCGA
Statistics
Matches: 411, Mismatches: 49, Indels: 40
0.82 0.10 0.08
Matches are distributed among these distances:
342 87 0.21
343 12 0.03
346 2 0.00
347 1 0.00
350 1 0.00
351 1 0.00
354 130 0.32
355 21 0.05
356 1 0.00
358 2 0.00
360 2 0.00
361 2 0.00
362 1 0.00
363 1 0.00
364 1 0.00
366 1 0.00
367 56 0.14
368 87 0.21
369 2 0.00
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (355 bp):
ACAGCACGTAGAGGGGGACCAGGCTGATCCCCGGCTTACGCATTCTGCCTCTTCGGTCGGTTGAG
CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCAGTCTAAGCATACGG
AGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGGACACAGCAGGATCGGTAG
CACCCAGGGGGGGATCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCGGGCCGGTTGAGCACC
CACACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
ACCGAGGGATGTGGCAGCAGGACCGGCAGC
Found at i:35738031 original size:159 final size:159
Alignment explanation
Indices: 35737663--35738032 Score: 368
Period size: 159 Copynumber: 2.3 Consensus size: 159
35737653 GAGCACCCAG
* * * **
35737663 ACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTTAGACC
1 ACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCTAGACAGACC
* * * *
35737728 GAGGGTTGTGGCAGCGGGACCGGCAGCACACAAAGAGGGACCGGGCCGATCCCCGACTTGCGCAT
66 GAGGGTTGTGGCAGCAGGACCGACAGCACACAAAGAGGGACCAGGCCGATCCCCGACTTGCACAT
* ***
35737793 TCTGCCTCTTCGGTCGGTTCAGCGCCCGC
131 TCTGCCTCTCCGGTCAACTCAGCGCCCGC
** * * * * * * *
35737822 ACGCTCATTTCATGGGTTGACTTATGCATTCGAAGTTCATTCCCA-ATCTAAGATC-AGACCGAA
1 ACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCTAGACAG-A
* ** * * * ** ** *
35737885 CCGAGGGTTGTGGCAGCAGGATCGACAGCATGC-AGGGGGTGATCAGGTTGATCCTTGGCTTGCA
64 CCGAGGGTTGTGGCAGCAGGACCGACAGCACACAAAGAGG-GACCAGGCCGATCCCCGACTTGCA
* *
35737949 CATTCTGCCTCTCCGGTCAACTGAGCGCCTGC
128 CATTCTGCCTCTCCGGTCAACTCAGCGCCCGC
*
35737981 ACGTTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 ACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
35738033 CATACGGACT
Statistics
Matches: 164, Mismatches: 43, Indels: 8
0.76 0.20 0.04
Matches are distributed among these distances:
158 10 0.06
159 151 0.92
160 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (159 bp):
ACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCTAGACAGACC
GAGGGTTGTGGCAGCAGGACCGACAGCACACAAAGAGGGACCAGGCCGATCCCCGACTTGCACAT
TCTGCCTCTCCGGTCAACTCAGCGCCCGC
Found at i:35738036 original size:26 final size:26
Alignment explanation
Indices: 35738006--35738058 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35737996 GTTGGCTTAG
*
35738006 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGACTTCATTCCCA-GTCTAA
35738032 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
35738058 G
1 G
35738059 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:35739043 original size:26 final size:26
Alignment explanation
Indices: 35739013--35739065 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35739003 GTTGGCTTAG
*
35739013 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
35739039 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35739065 G
1 G
35739066 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35740101 original size:159 final size:160
Alignment explanation
Indices: 35739809--35740103 Score: 364
Period size: 159 Copynumber: 1.9 Consensus size: 160
35739799 CAGATCGGAT
* * *
35739809 CGAGGGTTGTGGCAGGAGAGACCAGCAGCACGCAGAGGGGGACCAGACTGATCTTCGGCTTGCGC
1 CGAGGGTTGTGGCAGCAGAGACCAGCAACACGCAGAGGGGGACCAGACTGATCCTCGGCTTGCGC
* * * * * ** * * *
35739874 ATTATGCCTCTTCGGCCGAGTTAGTGCCCGTACGCCCGTTTTGTGGGTTGGCTTAGGATTAGGGA
66 ATTATGCCTCTCCGGCCGACTCAGCGCCCGTACGCCCATTTCATGGGTTGACTTAGGATTACGAA
35739939 GTTCATTTCTTGTCTAAGCCCCAGCCAGAC
131 GTTCATTTCTTGTCTAAGCCCCAGCCAGAC
* * * *
35739969 CGAGGGTTGTGGCAGCAG-GATCGGCAACACGCAGAGGGGGACCAG-GTCGATCCTCGGCTTGTG
1 CGAGGGTTGTGGCAGCAGAGACCAGCAACACGCAGAGGGGGACCAGACT-GATCCTCGGCTTGCG
* *
35740032 CATTATGCCTCTCCGGTCTG-CTCAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCA-TAC
65 CATTATGCCTCTCCGG-CCGACTCAGCGCCCGTACGCCCATTTCATGGGTTGACTTAGG-ATTAC
35740095 GAAGTTCAT
128 GAAGTTCAT
35740104 CCCCAGTCTA
Statistics
Matches: 113, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
158 1 0.01
159 92 0.81
160 20 0.18
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (160 bp):
CGAGGGTTGTGGCAGCAGAGACCAGCAACACGCAGAGGGGGACCAGACTGATCCTCGGCTTGCGC
ATTATGCCTCTCCGGCCGACTCAGCGCCCGTACGCCCATTTCATGGGTTGACTTAGGATTACGAA
GTTCATTTCTTGTCTAAGCCCCAGCCAGAC
Found at i:35740119 original size:26 final size:26
Alignment explanation
Indices: 35740089--35740141 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35740079 GTTGACTTAG
* *
35740089 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
*
35740115 GCATACAAAGTTCATTCCCAATCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
35740141 G
1 G
35740142 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAATCTAA
Found at i:35740287 original size:184 final size:185
Alignment explanation
Indices: 35739964--35740300 Score: 432
Period size: 184 Copynumber: 1.8 Consensus size: 185
35739954 AAGCCCCAGC
* * *
35739964 CAGACCGAGGGTTGTGGCAGCAGGATCGGCAACACGCAGAGGGGGACCAGGTCGATCCTCGGCTT
1 CAGACCGAGGGTTGCGGCAGCAGGATCGACAACACGAAGAGGGGGACCAGGTCGATCCTCGGCTT
* * * *
35740029 GTGCATTATGCCTCTCCGGTCTGCTCAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATA
66 GCGCATTATGCCTCTCCGGACCGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATA
35740094 CGAAGTTCATCCCCA-GTCTAAGCATACAAAGTTCATTCCCAATCTAAGATCAGAT
131 CGAAGTTCAT-CCCATGTCTAAGCATACAAAGTTCATTCCCAATCTAAGATCAGAT
* * *
35740149 CAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAAG-GGGGGATCGGGTCGATCC-CGGCT
1 CAGACCGAGGGTTGCGGCAGCAGGATCGACAACACG-AAGAGGGGGACCAGGTCGATCCTCGGCT
* * * * * *
35740212 TGCGCATTCTGCCTCTCC-GACCGACTGAGTGCCCGCATGAC-CGTTTCATGGGTTGGCTTAGGC
65 TGCGCATTATGCCTCTCCGGACCG-CTCAGCGCCCGCACG-CTCATTTCATGGGTTGACTTAGGC
* * *
35740275 ATAGGGAGTTCATTCCATGTCTAAGC
128 ATACGAAGTTCATCCCATGTCTAAGC
35740301 CCCAGTGGGA
Statistics
Matches: 129, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
183 6 0.05
184 71 0.55
185 50 0.39
186 2 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (185 bp):
CAGACCGAGGGTTGCGGCAGCAGGATCGACAACACGAAGAGGGGGACCAGGTCGATCCTCGGCTT
GCGCATTATGCCTCTCCGGACCGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATA
CGAAGTTCATCCCATGTCTAAGCATACAAAGTTCATTCCCAATCTAAGATCAGAT
Found at i:35740354 original size:343 final size:343
Alignment explanation
Indices: 35739669--35740802 Score: 1239
Period size: 343 Copynumber: 3.3 Consensus size: 343
35739659 CCTACCACCC
** ** ** *
35739669 GTTCGATCCTCGGCTTGCACATCCTGCCTCTCTAGTCGGCTGAGCGCCCGCACGCTCGTTTCGTG
1 GTTCGATCCTCGGCTTGTGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTG
* * * * * *
35739734 GGTTGACATAGGCATACGGACTTCATCCCCAGTCTAAGCATATAGAGTTCATT-CCAGTGTAAGA
66 GGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGA
* * * * **
35739798 TCAGATCGGATCGAGGGTTGTGGCAGGAGAGA-CCAGCAGCACG-CAGAGGGGGA-CCAGACTGA
131 TCAGATCGGATCGAGGGTTGCGGCAGCAG-GATCGA-CAGCACGTAAG-GGGGGATCGGGAC-GA
** * * * * * **
35739860 TCTTCGGCTTGCGCATTATGCCTCTTCGGCCGAGTTAGTGCCCGTACGCCCGTTTTGTGGGTTGG
192 TCGCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGTGCCCGTACGCCCGTTTCATGGGTTGG
* * * * *
35739925 CTTAGG-ATTAGGGAGTTCATTTCTTGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGA
257 CTTAGGCA-TAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGA
* * * *
35739989 TCGGCAACACGCAGAGGGGGACCAG
321 -CCGCAGCATGCAGAAGGGGACC-G
* * * *
35740014 G-TCGATCCTCGGCTTGTGCATTATGCCTCTCCGGTCTGCTCAGCGCCCGTACGCTCATTTCATG
1 GTTCGATCCTCGGCTTGTGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTG
*
35740078 GGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAATCTAAGA
66 GGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGA
* * *
35740143 TCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAAGGGGGGATCGGGTCGATC-C
131 TCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAAGGGGGGATCGGGACGATCGC
* * *
35740207 CGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGTGCCCGCATGACCGTTTCATGGGTTGGCTTA
196 CGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGTGCCCGTACGCCCGTTTCATGGGTTGGCTTA
* *
35740272 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTGGGACTGAGGGTTGTGGCAGCGGGACCAGC
261 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACC-GC
35740337 AGCATGCAGAAGGGGACCG
325 AGCATGCAGAAGGGGACCG
* * *
35740356 GTTCGATCCTCGACTTATGCATTATGCCCCTCCGG-CAGGCTCAGCGCCCGCACGCTCGTTTCGT
1 GTTCGATCCTCGGCTTGTGCATTATGCCTCTCCGGTC-GGCTCAGCGCCCGCACGCTCGTTTCGT
*
35740420 GGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
65 GGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAG
* * * * * * *
35740485 ATCGGATCGGATCGAGGGTTGCGGCAACAAGATCGATAGCATGTAGGGGGGGATCGGGCCGATCG
130 ATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAAGGGGGGATCGGGACGATCG
* * * ** * ** * * *
35740550 CCGGCTTGCGCATTCTACCTTTCTGA-TTAGCTGAGCGATCATACGCCCTTTTCATGGATTGGCT
195 CCGGCTTGCGCATTCTGCCTCTCCGACCGA-CTGAGTGCCCGTACGCCCGTTTCATGGGTTGGCT
* *
35740614 GAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCCGTCGGACCGA-GGTTGTGGCAGCGGGACCG
259 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCG
*
35740678 ATAGCATGCA-AAGGGGGACCG
324 -CAGCATGCAGAA-GGGGACCG
*** * * * * * * * * * *
35740699 AACCGATCCCCAGTTTGCGCATTATGCCTCTTCGATCGGGTTAGCGGCCGCACGCCCGTTTCGTG
1 GTTCGATCCTCGGCTTGTGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTG
* * * *
35740764 GGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
66 GGTTGACTTAGGCATACGAAGTTCATCCCCA-GTCTAAGC
35740803 CCTAGTGGGA
Statistics
Matches: 669, Mismatches: 106, Indels: 30
0.83 0.13 0.04
Matches are distributed among these distances:
342 10 0.01
343 407 0.61
344 210 0.31
345 42 0.06
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (343 bp):
GTTCGATCCTCGGCTTGTGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTG
GGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGA
TCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAAGGGGGGATCGGGACGATCGC
CGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGTGCCCGTACGCCCGTTTCATGGGTTGGCTTA
GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGCA
GCATGCAGAAGGGGACCG
Found at i:35740468 original size:26 final size:26
Alignment explanation
Indices: 35740432--35740484 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35740422 GTTGACTTAG
35740432 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
35740458 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
35740484 G
1 G
35740485 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:35740792 original size:502 final size:499
Alignment explanation
Indices: 35740252--35741798 Score: 1883
Period size: 502 Copynumber: 3.1 Consensus size: 499
35740242 GCCCGCATGA
*
35740252 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTGGGACTGAGG
1 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTGGGACCGAGG
35740317 GTTGTGGCAGCGGGACCAGCAGCATGCAGAAGGGGACCGGTTCGATCCTCGACTTATGCATTATG
66 GTTGTGGCAGCGGGACCAGCAGCATGCAGAAGGGGACCGGTTCGATCCTCGACTTATGCATTATG
*
35740382 CCCCTCCGGCAGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
131 CCCCTCCGGC-GGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCAT
35740447 CCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAA
195 CCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAA
*
35740512 CAAGATCGATAGCATGTAGGGGGGGATCGGGCCGATCGCCGGCTTGCGCATTCTACCT-TTCTGA
260 CAAGATCGATAGCATGTA-GGGGGGACCGGGCCGATC-CCGGCTTGCGCATTCTACCTCTTCTGA
* *
35740576 TTAGCTGAGCGATCATACGCCCTTTTCATGGATTGGCTGAGGCATAGGGAGTTCATTCCATGTCT
323 TCAGCTGAGCGATCGTACGCCCTTTTC-TGGATTGGCTGAGGCATAGGGAGTTCATTCCATGTCT
*
35740641 AAGCCCCCGTCGGACCGA-GGTTGTGGCAGCGGGACCGATAGCATGCAAAGGGGGACCGAACCGA
387 AAGCCCCCGTCGGATCGAGGGTTGTGGCAGCGGGACCGATAGCATGCAAAGGGGGACCGAACCGA
* *
35740705 TCCCCAGTTTGCGCATTATGCCTCTTCGATCGGGTTAGCGGCCGCACGC
452 TCCCC-GTTTACGCATTATGCCTCTTCGATCGGGTTAGCGACCGCACGC
* *
35740754 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTGGGACCGAGG
1 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTGGGACCGAGG
** * *
35740819 GTTGTGGCAATGGGACCAACAGCATGCAGAAGGGGACCGATTCGATCCTCGACTTATGCATTATG
66 GTTGTGGCAGCGGGACCAGCAGCATGCAGAAGGGGACCGGTTCGATCCTCGACTTATGCATTATG
* * * ** * *
35740884 CCCCTCCGACCGACTCAGCTCCCATACGCTTGTTTCATGGGTTGACTTAGGCATACAAAGTTCAT
131 CCCCTCCG-GCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCAT
*
35740949 CCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAA
195 CCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAA
*
35741014 CAAGATCGATAGCATGTAGGGGGGACCGGGCCGATCCTCGGCTTGCGTATTCTACCTCTTC-GAT
260 CAAGATCGATAGCATGTAGGGGGGACCGGGCCGATCC-CGGCTTGCGCATTCTACCTCTTCTGAT
* *
35741078 CAGCTGAGC-ACTCGTATGGCCTTTTC-GCGAGTTGGCTGAGGCATAGGGAGTTCATTCCATGTC
324 CAGCTGAGCGA-TCGTACGCCCTTTTCTG-GA-TTGGCTGAGGCATAGGGAGTTCATTCCATGTC
* * * * * * * * * *
35741141 TAAGCCCCCGCCGAATTGATGGTTGTGGCAACGAGACCGTTAGCACGCAGAGGGGGACCGAGCCG
386 TAAGCCCCCGTCGGATCGAGGGTTGTGGCAGCGGGACCGATAGCATGCAAAGGGGGACCGAACCG
* * * * * *
35741206 ATCCCCGGTTTACGCATTATACCTCTTTGGTCGGGTTAGCAACCGTACAC
451 ATCCCC-GTTTACGCATTATGCCTCTTCGATCGGGTTAGCGACCGCACGC
** ** **
35741256 CTATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
1 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTGGGACCGAGG
* * * * ** * *
35741321 GTTGTGGTAGCGGGA-CTGACAACACGCAG-AGAGGGATTAGG-TCGATCCTCGGCTTACGCATT
66 GTTGTGGCAGCGGGACCAG-CAGCATGCAGAAG-GGGA-CCGGTTCGATCCTCGACTTATGCATT
** *
35741383 ATGCTTCTCCGGTCGGCTCAGCGTCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTT
128 ATGCCCCTCCGG-CGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTT
* * * *
35741448 CATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGA-GG--GCAG
192 CATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGG
* * ** * ** * * *
35741510 -TAGAAG--CGGCAACACATA-GGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTTCT
257 CAACAAGATCGATAGCATGTAGGGGGGACCGGGCCGAT-CCCGGCTTGCGCATTCTACCTCTTCT
* ** * * *
35741571 -ATCGGCTGAGCGCCCGTACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
321 GATCAGCTGAGCGATCGTACGCCC-TTTTCTGGATTGGCTGAGGCATAGGGAGTTCATTCCATGT
* * * * * * **
35741635 CTAAGCTCCAGTTGGATCGAGGGTTGTGGCAGCGGGACCAACAGACGTAG-AAA--GGGACCGGT
385 CTAAGCCCCCGTCGGATCGAGGGTTGTGGCAGCGGGACCGATAG-CAT-GCAAAGGGGGACCGAA
* * * * * * *
35741697 TCGATCCTCGACTTACGCATTATGCCTCTTCGACCGGCTCAGCGCCCGCACGC
448 CCGATCCCCG-TTTACGCATTATGCCTCTTCGATCGGGTTAGCGACCGCACGC
* * * * *
35741750 TCGTTTCATGGGTTGACTTAGGCATATGAAGTTCA-TCCCTAGTCTAAGC
1 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT-GTCTAAGC
35741799 ATACGGAGTC
Statistics
Matches: 893, Mismatches: 132, Indels: 48
0.83 0.12 0.04
Matches are distributed among these distances:
493 5 0.01
494 80 0.09
495 114 0.13
496 17 0.02
497 2 0.00
498 4 0.00
499 4 0.00
500 4 0.00
501 110 0.12
502 551 0.62
503 2 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (499 bp):
CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTGGGACCGAGG
GTTGTGGCAGCGGGACCAGCAGCATGCAGAAGGGGACCGGTTCGATCCTCGACTTATGCATTATG
CCCCTCCGGCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATC
CCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAAC
AAGATCGATAGCATGTAGGGGGGACCGGGCCGATCCCGGCTTGCGCATTCTACCTCTTCTGATCA
GCTGAGCGATCGTACGCCCTTTTCTGGATTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGC
CCCCGTCGGATCGAGGGTTGTGGCAGCGGGACCGATAGCATGCAAAGGGGGACCGAACCGATCCC
CGTTTACGCATTATGCCTCTTCGATCGGGTTAGCGACCGCACGC
Found at i:35740919 original size:159 final size:157
Alignment explanation
Indices: 35740592--35740938 Score: 383
Period size: 159 Copynumber: 2.2 Consensus size: 157
35740582 GAGCGATCAT
* * * *
35740592 ACGCCCTTTTCATGGATTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCCGTCGGACC
1 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACC
* * * *
35740657 GAGGTTGTGGCAGCGGGACCGATAGCATGCAAAGGGGGACCGAACCGATCCCCAGTTTGCGCATT
66 GAGGTTGTGGCAACGGGACCAACAGCATGCAAAGGGGGACCGAACCGATCCCCACTTT-CGCATT
* * * ** * * *
35740722 ATGCCTCTTCGATCGGGTTAGCGGCCGC
130 ATGCCCCTCCGACCGACTCAGCGCCCAC
* * *
35740750 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTGGGACC
1 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACC
* ** *
35740815 GAGGGTTGTGGCAATGGGACCAACAGCATGCAGAA-GGGGACCGATTCGATCCTCGACTTAT-GC
66 GA-GGTTGTGGCAACGGGACCAACAGCATGCA-AAGGGGGACCGAACCGATCC-CCACTT-TCGC
* *
35740878 ATTATGCCCCTCCGACCGACTCAGCTCCCAT
127 ATTATGCCCCTCCGACCGACTCAGCGCCCAC
** *
35740909 ACGCTTGTTTCATGGGTTGACTTAGGCATA
1 ACGCCCGTTTCATGGGTTGGCTTAGGCATA
35740939 CAAAGTTCAT
Statistics
Matches: 156, Mismatches: 29, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
158 60 0.38
159 89 0.57
160 6 0.04
161 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACC
GAGGTTGTGGCAACGGGACCAACAGCATGCAAAGGGGGACCGAACCGATCCCCACTTTCGCATTA
TGCCCCTCCGACCGACTCAGCGCCCAC
Found at i:35740964 original size:26 final size:26
Alignment explanation
Indices: 35740934--35740986 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35740924 GTTGACTTAG
35740934 GCATACAAAGTTCATCCCCAATCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
* * *
35740960 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
35740986 G
1 G
35740987 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAATCTAA
Found at i:35741397 original size:159 final size:159
Alignment explanation
Indices: 35741108--35741398 Score: 359
Period size: 159 Copynumber: 1.8 Consensus size: 159
35741098 CTTTTCGCGA
* ** *
35741108 GTTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCCGCCGAATTGATGGTTGTGGCAAC
1 GTTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAAC
** * * * * **
35741173 GAGACCGTTAGCACGCAGAGGGGGACCGAGCCGATCCCCGGTTTACGCATTATACCTCTTTGGTC
66 GAGACCGACAACACGCAGAGAGGGACAGAGCCGATCCCCGGCTTACGCATTATACCTCTCCGGTC
35741238 GGGTTAGCAACCGTACACCTATTTTGTGG
131 GGGTTAGCAACCGTACACCTATTTTGTGG
* * * *
35741267 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGC
1 GTTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAAC
* * * * * * *
35741332 GGGACTGACAACACGCAGAGAGGGATTAG-GTCGATCCTCGGCTTACGCATTATGCTTCTCCGGT
66 GAGACCGACAACACGCAGAGAGGGA-CAGAGCCGATCCCCGGCTTACGCATTATACCTCTCCGGT
35741396 CGG
130 CGG
35741399 CTCAGCGTCC
Statistics
Matches: 108, Mismatches: 23, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
159 107 0.99
160 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (159 bp):
GTTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAAC
GAGACCGACAACACGCAGAGAGGGACAGAGCCGATCCCCGGCTTACGCATTATACCTCTCCGGTC
GGGTTAGCAACCGTACACCTATTTTGTGG
Found at i:35741466 original size:26 final size:26
Alignment explanation
Indices: 35741436--35741488 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35741426 GTTGACTTAG
*
35741436 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
35741462 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
35741488 G
1 G
35741489 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:35741801 original size:26 final size:26
Alignment explanation
Indices: 35741771--35741823 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
35741761 GTTGACTTAG
* *
35741771 GCATATGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTCCATTCCC-AGTCTAA
*
35741797 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGAAGTCCATTCCCAGTCTAA
35741823 G
1 G
35741824 ATCGAATCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTCCATTCCCAGTCTAA
Found at i:35742088 original size:158 final size:158
Alignment explanation
Indices: 35741864--35742214 Score: 420
Period size: 158 Copynumber: 2.2 Consensus size: 158
35741854 ACAGCATGTA
* * * * * **
35741864 AGGGGGGATCGGGCCGATCCCTGACTTGTGCATTCTACCTCTCCGATCAGCTGAGAACCCGTACG
1 AGGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTACCTCTCCGATCAGCTAAGAACCCACACG
* ***
35741929 CCCTTTTCGTGGGTTGGCTGAGGCATAGGGAGTTCATTCCATGTCGAAGCCCCCGTCGGA-TCGA
66 CCCGTTTCGTGGGTTGGCTGAGGCATAGGGAGTTCATTCCATGTCGAAGCCCCAACCGGACT-GA
*
35741993 GGGTTGTGGCAGCTGGCCCTG-CAACACGC
130 GGGTTGTGGCAGC-GGCACTGACAACACGC
* * * **
35742022 AGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTATCTCTCTGAT-AGGCTAAGCGCCCACAC
1 AGGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTACCTCTCCGATCA-GCTAAGAACCCACAC
* *
35742086 GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGA
65 GCCCGTTTCGTGGGTTGGCTGAGGCATAGGGAGTTCATTCCATGTCGAAGCCCCAACCGGACTGA
* * *
35742151 GGGTTGTGGCAGCGGGACTGACAGCATGC
130 GGGTTGTGGCAGCGGCACTGACAACACGC
* * *
35742180 AGAGAGGGACCGAGTCGATCCCCAGCTTGTGCATT
1 AG-GGGGGACCGGGTCGATCCCCGGCTTGTGCATT
35742215 ATGCCTCTTC
Statistics
Matches: 163, Mismatches: 26, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
157 6 0.04
158 128 0.79
159 29 0.18
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22
Consensus pattern (158 bp):
AGGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTACCTCTCCGATCAGCTAAGAACCCACACG
CCCGTTTCGTGGGTTGGCTGAGGCATAGGGAGTTCATTCCATGTCGAAGCCCCAACCGGACTGAG
GGTTGTGGCAGCGGCACTGACAACACGC
Found at i:35744356 original size:26 final size:26
Alignment explanation
Indices: 35744306--35744358 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35744296 GTTGGCTTAG
* *
35744306 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
35744332 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
35744358 G
1 G
35744359 ATCGTACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:35745096 original size:26 final size:26
Alignment explanation
Indices: 35745066--35745118 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35745056 GTTGACTTAG
*
35745066 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
*
35745092 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
35745118 G
1 G
35745119 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:35745313 original size:380 final size:380
Alignment explanation
Indices: 35744284--35745321 Score: 1242
Period size: 380 Copynumber: 2.7 Consensus size: 380
35744274 TGCCTGCACA
* *
35744284 CTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACAGAGTTCATT
1 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCA-GTCTAAGCATACAGAGTTCATT
* * * * * *
35744348 CCCAATCTAAGATCGTACCGGA-TCGAAGGTTGTGGTAGTAAGA-CAGTAGCAGGATCGACAGCA
65 CCCAGTCTAAGATCGTACCGGACT-GAGGGTTGCGATAGTAGGACCAGCAGCAGGATCGACAGCA
* * * * * * * *
35744411 CGCAAGGGGGGATCGGGCCGATCCTCGGCTTACGAATTTTGCCTCTCCGGTCGACTGAGCAG-TC
129 TG-ATGGGTGGATCGGGCCGATCCCCGGCTTACGAATTCTGCCTCTCCGGTCGGCTGAG-TGCCC
* ** * * * *
35744475 GCACGCTTGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCGGA
192 GCATGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
* * ** * * * *
35744540 CCAAGGGTTGTGGCAGCAAGACTGGCAGCGGGATTGGCAGCACGTAGAGGGGGACCGAATTGATC
257 CCAAGGGTTGTGGTAGCAGGACCAGCAGCGGGATCGACAGCACGTAGAGAGGGACCGAACTGATC
* ** * * *
35744605 CTCGAATTGCGTATTATGCCTCTCTAGACGACCTCTCCAGTCGACTGAGCGCCCATACG
322 CCCGAATTGCACATTATGCCACTCCAGACGACCTCTCCAGTCGACTAAGCGCCCATACG
* * *
35744664 CTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTC
1 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATACAGAGTTCATTC
* * * * * *
35744729 CTAGTCTAAGATCGTACTGGACCGAGGGTTGCGACAGTAGGACCAGCAGTAGGATCGATAGCATG
66 CCAGTCTAAGATCGTACCGGACTGAGGGTTGCGATAGTAGGACCAGCAGCAGGATCGACAGCATG
* * * ** * * *
35744794 -TAGGGTGGACCGAGCCAATCCCTAGCTTACGGATTCTGCCTCTTCGGTCAGCTGAGTGCCCGCA
131 AT-GGGTGGATCGGGCCGATCCCCGGCTTACGAATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCA
** * * *
35744858 TGCCCGTTTCGTGAATTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCG
195 TGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCA
* * *
35744923 AGGGTTGTGGTAGCAGGACCAGCAGTGGGATCGACAGCATGTAGAGAGGGACCGAGCTGATCCCC
260 AGGGTTGTGGTAGCAGGACCAGCAGCGGGATCGACAGCACGTAGAGAGGGACCGAACTGATCCCC
* * * * *
35744988 GACTTGCACATTATGCCACTTCCA-ACGTCCTCTCCGGTCGGCTAAGCGCCCATATG
325 GAATTGCACATTATGCCAC-TCCAGACGACCTCTCCAGTCGACTAAGCGCCCATACG
* *
35745044 CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATATAGAGTTCATTC
1 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATACAGAGTTCATTC
* * * * *
35745109 CCAGTCTAAGATCGGACCGGACTGAGGGTTACGATAGCAGGACCAGCAACAGGATTGACAGCATG
66 CCAGTCTAAGATCGTACCGGACTGAGGGTTGCGATAGTAGGACCAGCAGCAGGATCGACAGCATG
* * * *
35745174 ATGGGTGGATCGGGTCGATCCCCGGCTTGCGTATTCTGCCTCTCCGATCGGCTGAGTGCCCGCAT
131 ATGGGTGGATCGGGCCGATCCCCGGCTTACGAATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCAT
* * *
35745239 GCCCGTTTCGTGGGTTGGTTTAGGCATAAGGAGTTCATTCCGTGTCTAAGCCCCAGCCAGACCAA
196 GCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAA
*
35745304 GGGTTGTGGTAGCGGGAC
261 GGGTTGTGGTAGCAGGAC
35745322 TGACAGCATA
Statistics
Matches: 548, Mismatches: 103, Indels: 14
0.82 0.15 0.02
Matches are distributed among these distances:
379 1 0.00
380 522 0.95
381 25 0.05
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (380 bp):
CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATACAGAGTTCATTC
CCAGTCTAAGATCGTACCGGACTGAGGGTTGCGATAGTAGGACCAGCAGCAGGATCGACAGCATG
ATGGGTGGATCGGGCCGATCCCCGGCTTACGAATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCAT
GCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAA
GGGTTGTGGTAGCAGGACCAGCAGCGGGATCGACAGCACGTAGAGAGGGACCGAACTGATCCCCG
AATTGCACATTATGCCACTCCAGACGACCTCTCCAGTCGACTAAGCGCCCATACG
Found at i:35745637 original size:158 final size:162
Alignment explanation
Indices: 35745407--35745766 Score: 365
Period size: 170 Copynumber: 2.2 Consensus size: 162
35745397 TTCTCGTTTA
* ** ** *
35745407 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGATTGGACCGAGCATTGCGG
1 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAACATTGCGG
* ** * *
35745472 TAGCAGGA-T-C-T-ACAGCACGTAGGGGGGACTGGGCTGATCCCCAGCTTG-GACATTTTGCCT
66 CAGCAGGACTACATCACAGCACGTAGGGGGGACTGGGCCAATCCCCAGCTTGCG-CATTCTACCT
35745532 CT-CCGTCCGGTTGAGCGCCCGCACGCTCATTTC
130 CTGCCGT-CGGTTGAGCGCCCGCACGCTCATTTC
* * * *
35745565 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATC-AATAGTTGCG
1 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAACA-TTGCG
* * *
35745629 GCAGCAGGACTAGCAGTAGGATCGACAGCACGTAGGGGGGATTTGGCCAATCCCTAGCTTGCGCA
65 GCAGCAGGACTA-C------ATC-ACAGCACGTAGGGGGGACTGGGCCAATCCCCAGCTTGCGCA
* * *
35745694 TTCTACCTCTGCGGTCGGTTGAGCGCCCGTACGCTCATTTT
122 TTCTACCTCTGCCGTCGGTTGAGCGCCCGCACGCTCATTTC
* *
35745735 GTGGGTTGGCTTTGGCATACGGAGTTCATTCC
1 ATGGGTTGGCTTAGGCATACGGAGTTCATTCC
35745767 ATGTCCAAAC
Statistics
Matches: 164, Mismatches: 23, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
157 2 0.01
158 59 0.36
159 1 0.01
161 1 0.01
168 1 0.01
170 96 0.59
171 4 0.02
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (162 bp):
ATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAACATTGCGG
CAGCAGGACTACATCACAGCACGTAGGGGGGACTGGGCCAATCCCCAGCTTGCGCATTCTACCTC
TGCCGTCGGTTGAGCGCCCGCACGCTCATTTC
Found at i:35745823 original size:170 final size:170
Alignment explanation
Indices: 35745475--35745846 Score: 403
Period size: 170 Copynumber: 2.2 Consensus size: 170
35745465 ATTGCGGTAG
* ** * *
35745475 CAGGATCTACAGCACGTAGGGGGGACTGGGCTGATCCCCAGCTTGGACATTTTGCCTCTCCGTCC
1 CAGGATCGACAGCACGTAGGGGGGACTGGGCCAATCCCCAGCTTGGACATTCTACCTCTCCGTCC
*
35745540 GGTTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAA
66 GGTTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCCAA
* * * * *
35745605 GATCAGACCGGATCAATAGTTGCGGCAGCAGGACTAGCAG
131 GACCAGACCGAACCAAGAGTTGCGGCAGCAGGACTAGCAA
* * * * *
35745645 TAGGATCGACAGCACGTAGGGGGGATTTGGCCAATCCCTAGCTTGCG-CATTCTACCTCTGCGGT
1 CAGGATCGACAGCACGTAGGGGGGACTGGGCCAATCCCCAGCTTG-GACATTCTACCTCT-CCGT
* ** *
35745709 -CGGTTGAGCGCCCGTACGCTCATTTTGTGGGTTGGCTTTGGCATACGGAGTTCATTCC-ATGTC
64 CCGGTTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTA-GTC
* * * * * * *
35745772 CAA-ACCCCAG-TCGAACCGAGGGTTGTGGCAGTAGGACTGGTAA
128 CAAGA--CCAGACCGAACCAAGAGTTGCGGCAGCAGGACTAGCAA
*
35745815 CGGGATCGACAGCACGTAGAGGGGGACTGGGC
1 CAGGATCGACAGCACGTAG-GGGGGACTGGGC
35745847 TGATCCCTGA
Statistics
Matches: 165, Mismatches: 31, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
169 2 0.01
170 146 0.88
171 17 0.10
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.23
Consensus pattern (170 bp):
CAGGATCGACAGCACGTAGGGGGGACTGGGCCAATCCCCAGCTTGGACATTCTACCTCTCCGTCC
GGTTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCCAA
GACCAGACCGAACCAAGAGTTGCGGCAGCAGGACTAGCAA
Found at i:35746403 original size:867 final size:860
Alignment explanation
Indices: 35744712--35746341 Score: 1951
Period size: 867 Copynumber: 1.9 Consensus size: 860
35744702 CCCAGTCTAA
* * * *
35744712 GCATACAGAGTTCATTCCTAGTCTAAGATCGTACTGGACCGAGGGTTGCGACAGTAGGACCAGCA
1 GCATACAGAGTTCATTCCTAGTCTAAGATCGTACCGGACCAAGAGTTGCGACAGCAGGACCAGCA
* * * * * *
35744777 GTAGGATCGATAGCATGTAGGGTGGACCGAGCCAATCCCTAGCTTACGGATTCTGCCTCTTCGGT
66 GTAGGATCGACAGCACGTAGGGGGGACCGAGCCAATCCCTAGCTTACGCATTCTACCTCTGCGGT
* * * *
35744842 CAGCTGAGTGCCCGCATGCCCGTTTCGTGAATTGGCTTAGGCATAAGGAGTTCATTCCATGTCTA
131 CAGCTGAGCGCCCGCACGCCCATTTCGTGAATTGGCTTAGGCATAAGGAGTTCATTCCATGTCCA
* * * * ** *
35744907 AGCCCCAACCGGATCGAGGGTTGTGGTAGCAGGACCAGCAGTGGGATCGACAGCATGTAGAGAGG
196 AACCCCAACCGAACCGAGGGTTGTGGCAGCAGGACCAGCAACGGGATCGACAGCACGTAGAGAGG
* *
35744972 GACCGAGCTGATCCCCGACTTGCACATTATGCCACTTCCAACGTCCTCTCCGGTCGGCTAAGCGC
261 GACCGAGCTGATCCCCGACTTGCACAATATGCCACTTCCAACGTCCTCTCCGGTCGGCTAAGAGC
*
35745037 CCATATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATATAGAG
326 CCATATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATACAGAG
* *
35745102 TTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGATAGCAGGACCAGCAACAGGATTGA
391 TTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTA-GAT---A-GACCAG--ACAGGATCGA
* * * * *
35745167 CAGCATGATGGGTGGATCGGGTCGATCCCCGGCTTGCGTATTCTGCCTCTCCGATCGGCTGAGTG
449 CAGCATGATGGGGGGACCGGCTCGATCCCCGGCTTGCGTATTCTGCCTCTCCGATCGACTGAATG
** * * * *
35745232 CCCGCATGCCCGTTTCGTGGGTTGGTTTAGGCATAAGGAGTTCATTCCGTGTCTAAGCCCCAGCC
514 CCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGGTCATTCCATGTCTAAGCCCCAACC
* * ** * * * * **
35745297 AGACCAAGGGTTGTGGTAGCGGGACTGACAGCATATAGAGAGAGACTAGGTCGATCCTTGGCTTA
579 AGACCAAGGGTTATGGCAGCCAGACTGACAGCACACAGAGAGAGACCAAGTCGATCCCCGGCTTA
** * *
35745362 CGCATTATGCCTCTCCGGTCGGCTCAGCACCCGCATTCTCGTTTAATGGGTTGACTTAGGCATAC
644 CGCATTATGCCTCTCCGACCGGCTCAGCACCCACATTCTCATTTAATGGGTTGACTTAGGCATAC
* * * * * *
35745427 GGAGTTCATTCCCAATCTAAGATTGGATTGGACCGAGCATTGCGGTAGCAGGATCTACAGCACGT
709 GGAGTTCATTCCCAATCTAAGATTGGACTGGACCGAGCATTGCGGCAACAGGACCGACAGCACGC
*** *
35745492 AGGGGGGACTGGGCTGATCCCCAGCTTGGACATTTTGCCTCTCCGTCCGGTTGAGCGCCCGCACG
774 AGGGGGGACCAAGCTGATCCCCAGCTTGGACATTATGCCTCTCCGTCCGGTTGAGCGCCCGCACG
35745557 CTCATTTCATGGGTTGGCTTAG
839 CTCATTTCATGGGTTGGCTTAG
* * * * *
35745579 GCATACGGAGTTCATTCCTAGTCTAAGATCAG-ACCGGATCAATAGTTGCGGCAGCAGGACTAGC
1 GCATACAGAGTTCATTCCTAGTCTAAGATC-GTACCGGACCAAGAGTTGCGACAGCAGGACCAGC
** *
35745643 AGTAGGATCGACAGCACGTAGGGGGGATTTG-GCCAATCCCTAGCTTGCGCATTCTACCTCTGCG
65 AGTAGGATCGACAGCACGTAGGGGGGA-CCGAGCCAATCCCTAGCTTACGCATTCTACCTCTGCG
* * * * * ** * *
35745707 GTCGGTTGAGCGCCCGTACGCTCATTTTGTGGGTTGGCTTTGGCATACGGAGTTCATTCCATGTC
129 GTCAGCTGAGCGCCCGCACGCCCATTTCGTGAATTGGCTTAGGCATAAGGAGTTCATTCCATGTC
** * ** * *
35745772 CAAACCCCAGTCGAACCGAGGGTTGTGGCAGTAGGACTGGTAACGGGATCGACAGCACGTAGAGG
194 CAAACCCCAACCGAACCGAGGGTTGTGGCAGCAGGACCAGCAACGGGATCGACAGCACGTAGAGA
* * * ** * * *
35745837 GGGACTGGGCTGATCCCTGACTTGCGTAATATGCCTC-TCCGACTGGT-CTTTCCGGTCGGCTAA
259 GGGACCGAGCTGATCCCCGACTTGCACAATATGCCACTTCCAAC--GTCCTCTCCGGTCGGCTAA
* * *
35745900 GAGCCCGTATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATC-CCTAGTCTAAGCATG
322 GAGCCCATATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCTCC-AGTCTAAGCATA
*
35745964 CAGAGTTCATTCCCAGTCTAAGATCAGATCGGA-TCGAGGGTT-G-T-GA-CAG-CAGGATCGAC
386 CAGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTAGATAGACCAGACAGGATCGAC
*
35746023 AGCATGCA-GGGGGGACCAGGCT-GATCCCCGGCTTGC-TCATTCTGCGTCTCCGATCGACTGAA
450 AGCATG-ATGGGGGGACC-GGCTCGATCCCCGGCTTGCGT-ATTCTGCCTCTCCGATCGACTGAA
* *
35746085 TGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGGTCATTCCATGTCTAAGCCGCAA
512 TGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGGTCATTCCATGTCTAAGCCCCAA
* * * * *
35746150 CCAGACCGAGGGTTATGGCAGCCAGACTGGCAGTACACAGAGGGGGACCAAGTCGATCCCCGGCT
577 CCAGACCAAGGGTTATGGCAGCCAGACTGACAGCACACAGAGAGAGACCAAGTCGATCCCCGGCT
* * * ** *
35746215 TGCG-ATTATGCCTCTCTGACCGGTTCAGTGCCCACACTT-TCATTTCATGGGTTGACTTAGGCA
642 TACGCATTATGCCTCTCCGACCGGCTCAGCACCCACA-TTCTCATTTAATGGGTTGACTTAGGCA
* * ** *
35746278 TACGGAGTTCATTCCCAGTCTAAGATTGGACTGGATCGAGGGTTGTGGCAACAGGACCGACAGC
706 TACGGAGTTCATTCCCAATCTAAGATTGGACTGGACCGAGCATTGCGGCAACAGGACCGACAGC
35746342 GAGATTGGCA
Statistics
Matches: 642, Mismatches: 111, Indels: 33
0.82 0.14 0.04
Matches are distributed among these distances:
854 102 0.16
855 169 0.26
856 4 0.01
858 3 0.00
859 2 0.00
864 1 0.00
865 1 0.00
866 8 0.01
867 348 0.54
868 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (860 bp):
GCATACAGAGTTCATTCCTAGTCTAAGATCGTACCGGACCAAGAGTTGCGACAGCAGGACCAGCA
GTAGGATCGACAGCACGTAGGGGGGACCGAGCCAATCCCTAGCTTACGCATTCTACCTCTGCGGT
CAGCTGAGCGCCCGCACGCCCATTTCGTGAATTGGCTTAGGCATAAGGAGTTCATTCCATGTCCA
AACCCCAACCGAACCGAGGGTTGTGGCAGCAGGACCAGCAACGGGATCGACAGCACGTAGAGAGG
GACCGAGCTGATCCCCGACTTGCACAATATGCCACTTCCAACGTCCTCTCCGGTCGGCTAAGAGC
CCATATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATACAGAG
TTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTAGATAGACCAGACAGGATCGACAGCATG
ATGGGGGGACCGGCTCGATCCCCGGCTTGCGTATTCTGCCTCTCCGATCGACTGAATGCCCGCAC
ACCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGGTCATTCCATGTCTAAGCCCCAACCAGACCAA
GGGTTATGGCAGCCAGACTGACAGCACACAGAGAGAGACCAAGTCGATCCCCGGCTTACGCATTA
TGCCTCTCCGACCGGCTCAGCACCCACATTCTCATTTAATGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAATCTAAGATTGGACTGGACCGAGCATTGCGGCAACAGGACCGACAGCACGCAGGGGGG
ACCAAGCTGATCCCCAGCTTGGACATTATGCCTCTCCGTCCGGTTGAGCGCCCGCACGCTCATTT
CATGGGTTGGCTTAG
Found at i:35746494 original size:26 final size:26
Alignment explanation
Indices: 35746458--35746510 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35746448 GTTGACTTAG
35746458 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
35746484 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35746510 G
1 G
35746511 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35746694 original size:26 final size:26
Alignment explanation
Indices: 35746656--35746705 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
35746646 GGCTTAGGTA
*
35746656 TACGGAGTTCATTC-CACGTCTAAGCG
1 TACGGAGTGCATTCTCA-GTCTAAGCG
35746682 TACGGAGTGCATTCTCAGTCTAAG
1 TACGGAGTGCATTCTCAGTCTAAG
35746706 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (26 bp):
TACGGAGTGCATTCTCAGTCTAAGCG
Found at i:35747403 original size:26 final size:26
Alignment explanation
Indices: 35747374--35747426 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35747364 GTTGACTTAG
35747374 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
35747400 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
35747426 G
1 G
35747427 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:35748242 original size:195 final size:195
Alignment explanation
Indices: 35747864--35748293 Score: 648
Period size: 195 Copynumber: 2.2 Consensus size: 195
35747854 TCATTTCGTG
* *
35747864 GGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGCATATGGAGTTCATTCCCAATCTAAGA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAGAGTTCATTCCCAATCTAAGA
* * * *
35747929 TCGGATCGAACCGAGGGTTGCAACAGCAGGACCAGCAGCAGGATCGACAACATGTAGGGGGGACC
66 TCAGATCGAACCAAGGGTTG-AACAGCAGGACCAGCAGCAGGATCGACAACACGCAGGGGGGACC
* *
35747994 GAGGCCATCCCCGGCTTGCGCATTCTACCTCTCCAGTCGGCTGAGCGCCCGCACGCTCGTTTCAT
130 GAGGCCATCCCCAGCTTGCGCATTCTACCTCTCCAGTCGGCTGAGCACCCGCACGCTCGTTTCAT
35748059 A
195 A
*
35748060 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAGAGTTCATTTCCAATCTAAGA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAGAGTTCATTCCCAATCTAAGA
* * * * *
35748125 TCAGATCGGACCAAGGGTTTG-GCAGTAGGACCAGCAGCAGGATCGATAGCACGCAGGGGGGACC
66 TCAGATCGAACCAAGGG-TTGAACAGCAGGACCAGCAGCAGGATCGACAACACGCAGGGGGGACC
* * **
35748189 -AGGGCCATCCCCAGCTTGCGTATTCTGCCTCTCTTGTCGGCTGAGCACCCGCACGCTCGTTTCA
130 GA-GGCCATCCCCAGCTTGCGCATTCTACCTCTCCAGTCGGCTGAGCACCCGCACGCTCGTTTCA
*
35748253 TG
194 TA
35748255 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
35748294 CCCAGTCGAA
Statistics
Matches: 213, Mismatches: 19, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
194 1 0.00
195 133 0.62
196 76 0.36
197 3 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (195 bp):
GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATAGAGTTCATTCCCAATCTAAGA
TCAGATCGAACCAAGGGTTGAACAGCAGGACCAGCAGCAGGATCGACAACACGCAGGGGGGACCG
AGGCCATCCCCAGCTTGCGCATTCTACCTCTCCAGTCGGCTGAGCACCCGCACGCTCGTTTCATA
Found at i:35748837 original size:159 final size:158
Alignment explanation
Indices: 35748537--35748839 Score: 339
Period size: 159 Copynumber: 1.9 Consensus size: 158
35748527 CACAGGATCA
* * * * *
35748537 GTAGCACGCAGGGGGGACGGAGCTGATCCTTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGC
1 GTAGCACGCAGGGGGGACGGAGCTGATCCCTAGCTTACGCATTATGCCTCTCCGATCGGCTAAGC
* * *
35748602 ACCCGCACGCCTGTTTCATGAGTTGGCTTAGGCATAGGGAGGTCATTCCATGTCTAAGCCCTAGC
66 ACCCGCACGCCTGTTTCATGAGTTGACTTAGGCATAAGGAGGTCATTCCATGTCTAAGACCTAGC
*
35748667 CGGACTGAGGGTTGTGGTAGTGGGACCG
131 CAGACTGAGGGTTGTGGTAGTGGGACCG
* * *
35748695 GTAGCACGCAGAGGGGGATCGG-GTTGATCCCTAGCTTACGCATTATGCCTCTTCGATCGGCTCA
1 GTAGCACGCAG-GGGGGA-CGGAGCTGATCCCTAGCTTACGCATTATGCCTCTCCGATCGGCTAA
** * * * *
35748759 GTGCCCGCATG-CTCGTTTCATGGGTTGACTTATGCATACAGG-GTTCATTCCCA-GTCTAAGAC
64 GCACCCGCACGCCT-GTTTCATGAGTTGACTTAGGCATA-AGGAGGTCATT-CCATGTCTAAGAC
35748821 C-AGACCAGA-TCGAGGGTTG
126 CTAG-CCAGACT-GAGGGTTG
35748840 CGACAGCAGG
Statistics
Matches: 120, Mismatches: 18, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
158 16 0.13
159 96 0.80
160 8 0.07
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
GTAGCACGCAGGGGGGACGGAGCTGATCCCTAGCTTACGCATTATGCCTCTCCGATCGGCTAAGC
ACCCGCACGCCTGTTTCATGAGTTGACTTAGGCATAAGGAGGTCATTCCATGTCTAAGACCTAGC
CAGACTGAGGGTTGTGGTAGTGGGACCG
Found at i:35748981 original size:26 final size:26
Alignment explanation
Indices: 35748951--35749003 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35748941 CTTGGCTTAG
35748951 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
35748977 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35749003 G
1 G
35749004 ATTTTGATCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35749709 original size:26 final size:26
Alignment explanation
Indices: 35749673--35749725 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35749663 GTTGACTTAG
35749673 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
35749699 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35749725 G
1 G
35749726 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35750007 original size:159 final size:159
Alignment explanation
Indices: 35749739--35750202 Score: 481
Period size: 159 Copynumber: 2.9 Consensus size: 159
35749729 GGATTGGATT
* * * * * *
35749739 GAGGGTTACGACAGCAGGATCGACAGCACGCAGTGGGGATCGGG-CAGATCCCCGGCTTGCGTAT
1 GAGGGTTGCGGCAGCAGGACCAACAGCACGCAGGGGGGATCGGGTC-GATCCCCGGCTTGCGCAT
* * * * *
35749803 TCTGCCTCTTCGGCCAGCTGAGCACCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGT
65 TCTGCCTCTTCGGCCAGATGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAGGGAGT
* *
35749868 TCATTCCATGTCTAAGCCGCA-ACCAAATC
130 TCATTCCATGTCTAAGCAGCAGACCAAACC
* *
35749897 GAGGGTTGTGGCAGCGGGACCAACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCAT
1 GAGGGTTGCGGCAGCAGGACCAACAGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCAT
* * * * * * **
35749962 TATGCTTTTTCGGCCAGATCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGT
65 TCTGCCTCTTCGGCCAGATGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAGGGAGT
* ***
35750027 TCATTCGCA-GTCTAAG-ATCAGACTGGACC
130 TCATTC-CATGTCTAAGCAGCAGACCAAACC
* * * ***
35750056 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGA-CTGGGTCGATCCCCGACTCATGCAT
1 GAGGGTTGCGGCAGCAGGACCAACAGCACGCAGGGGGGATC-GGGTCGATCCCCGGCTTGCGCAT
* * * * * * *
35750120 TCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGCTCCTTTCATGGGTTGCCTTGGGCAT-GCGGAG
65 TCTGCCTCTTCGGCCAGATGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAG-GGAG
35750184 TTCATTCCATGTCTAAGCA
129 TTCATTCCATGTCTAAGCA
35750203 TATGGAGTTC
Statistics
Matches: 249, Mismatches: 49, Indels: 15
0.80 0.16 0.05
Matches are distributed among these distances:
157 3 0.01
158 117 0.47
159 126 0.51
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (159 bp):
GAGGGTTGCGGCAGCAGGACCAACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATT
CTGCCTCTTCGGCCAGATGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAGGGAGTT
CATTCCATGTCTAAGCAGCAGACCAAACC
Found at i:35750185 original size:158 final size:156
Alignment explanation
Indices: 35749699--35750200 Score: 521
Period size: 158 Copynumber: 3.2 Consensus size: 156
35749689 CCCAGTCTAA
* * * * *
35749699 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATTGGATTGAGGGTTACGACAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACTGGATCGAGGGTTGCGGCAGCAGGATCGAC
* * *
35749763 AGCACGCAGTGGGGATCGGG-CAGATCCCCGGCTTGCGTATTCTGCCTCTTCGGCCAGCTGAGCA
65 AGCACGCAGGGGGGATCGGGTC-GATCCCCGGCTTGC--ATTCTGCCTCTTCGGCCAGATGAGCG
* *
35749827 CCCACACGC-CCATTTCATGGGTTGGCTTAG
127 CCCGCACGCTCC-TTTCATGGGTTGACTTAG
* ** *** * * * *
35749857 GCATAGGGAGTTCATTCCATGTCTAAGCCGCA-ACCAAATCGAGGGTTGTGGCAGCGGGACCAAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACTGGATCGAGGGTTGCGGCAGCAGGATCGAC
* * * *
35749921 AGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCTTTTTCGGCCAGATCAGCG
65 AGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTT--GCATTCTGCCTCTTCGGCCAGATGAGCG
* *
35749986 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
127 CCCGCACGCTCCTTTCATGGGTTGACTTAG
* *
35750016 GCATACAGAGTTCATTCGCA-GTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTC-CATGTCTAAGATCAGACTGGATCGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
35750080 AGCACGCAGGGGGGA-CTGGGTCGATCCCCGACTCATGCATTCTGCCTCTCCGGTCGGTTGAGCG
65 AGCACGCAGGGGGGATC-GGGTCGATCCCCGGCT--TGCATTCTGCCTCTTCGGCCAGATGAGCG
* *
35750144 CCCGCACGCTCCTTTCATGGGTTGCCTTGG
127 CCCGCACGCTCCTTTCATGGGTTGACTTAG
*
35750174 GCATGCGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
35750201 CATATGGAGT
Statistics
Matches: 278, Mismatches: 53, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
157 6 0.02
158 143 0.51
159 122 0.44
160 5 0.02
161 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACTGGATCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCATTCTGCCTCTTCGGCCAGATGAGCGCCCG
CACGCTCCTTTCATGGGTTGACTTAG
Found at i:35750334 original size:184 final size:184
Alignment explanation
Indices: 35750023--35750385 Score: 507
Period size: 184 Copynumber: 2.0 Consensus size: 184
35750013 TAGGCATACA
** * *
35750023 GAGTTCATTCGCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
1 GAGTTCATTCGCAGTCTAAGATCAGACCAGACCAAGGGATGCGGCAGCAGGATCGACAGCACGCA
* ** * *
35750088 GGGGGGACTGGGTCGATCCCCGACTCATGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGC
66 GGGGGGACTGGGCCGATCCCCGACTCATGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGC
* * *
35750153 TCCTTTCATGGGTTGCCTTGGGCATGCGGAGTTCATTCCATGTCTAAGCATATG
131 TCATTTCATGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATG
* * *
35750207 GAGTTCATTC-CTAGTCTAAGATC-GAACCAGATCAAGGGATGCGGTAGCAGGATCGGCAGCACG
1 GAGTTCATTCGC-AGTCTAAGATCAG-ACCAGACCAAGGGATGCGGCAGCAGGATCGACAGCACG
**
35750270 CAGGGGGGAAC-GGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCA
64 CAGGGGGG-ACTGGGCCGATCCCCGACTCATGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCA
* *
35750334 CGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
128 CGCTCATTTCATGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
35750386 CCTAGCCAGA
Statistics
Matches: 157, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
183 2 0.01
184 153 0.97
185 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (184 bp):
GAGTTCATTCGCAGTCTAAGATCAGACCAGACCAAGGGATGCGGCAGCAGGATCGACAGCACGCA
GGGGGGACTGGGCCGATCCCCGACTCATGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGC
TCATTTCATGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATG
Found at i:35750578 original size:26 final size:26
Alignment explanation
Indices: 35750542--35750594 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35750532 GTTGACTTAG
35750542 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
35750568 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
35750594 G
1 G
35750595 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:35750856 original size:159 final size:159
Alignment explanation
Indices: 35750565--35751072 Score: 490
Period size: 159 Copynumber: 3.2 Consensus size: 159
35750555 ATCCCCAGTC
* * * * ** *
35750565 TAAGCATATGGAGTTCATTCC-TAGTCTAAG-ATCAAACCGGACCGAGGGTTGCGACAGCAAG-T
1 TAAGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCAGACCGAGGGTTGCGGTAGCAAGAC
** * * * * *
35750627 TCGGTAGCACACAGGGGGGATCGGGTCGATCCCCGTCTTGCACATTCTGCCTC-TCTAGCCGGCT
65 T-GACAGCTCACAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGA-CCGGCT
*
35750691 GAGCGCCCGCACGCCCGTTTCATGGGTTGGCT
128 GAGCGCCCGCACGCTCGTTTCATGGGTTGGCT
* * * **
35750723 TAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGTAGCGGGACT
1 TAAGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGTAGCAAGACT
* * * *
35750787 GGCAGCTCACAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTTCGACCGGCTCA
66 GACAGCTCACAG-GGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGACCGGCTGA
* * * *
35750852 GCGCCCGCACGCTCATTTCGTAGGTTGACT
130 GCGCCCGCACGCTCGTTTCATGGGTTGGCT
* * * * * *
35750882 TATGCATACGGAGTTCATTCCAAGTCTAAG-ATCGGACCAGACCGAGGGTTGCGGTAGTAAGATT
1 TAAGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGTAGCAAGACT
* * ** * * * *
35750946 GACAGCTTATAGTGGGGGATCAAGCTGATCCCCGACTTGCGCATTCTACCTCTCCGGCCGGCTGA
66 GACAGCTCACAG-GGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGACCGGCTGA
* * *
35751011 GCGCCCGTACGTTCGTTTCATGGGTTAGCT
130 GCGCCCGCACGCTCGTTTCATGGGTTGGCT
* *
35751041 TAGGCATATGGAGTTCATTCC-TAGTCTAAGCA
1 TAAGCATACGGAGTTCATTCCAT-GTCTAAGCA
35751073 TACGGAGTTC
Statistics
Matches: 284, Mismatches: 58, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
158 58 0.20
159 222 0.78
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
TAAGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGTAGCAAGACT
GACAGCTCACAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGACCGGCTGAG
CGCCCGCACGCTCGTTTCATGGGTTGGCT
Found at i:35751074 original size:26 final size:26
Alignment explanation
Indices: 35751044--35751096 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35751034 GTTAGCTTAG
* * *
35751044 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
35751070 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
35751096 G
1 G
35751097 ATTGAATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:35751379 original size:699 final size:699
Alignment explanation
Indices: 35750501--35751798 Score: 1675
Period size: 699 Copynumber: 1.9 Consensus size: 699
35750491 GCGTCTCCGA
* * * * *
35750501 CCGGCTAAATGCCCACACTCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCT
1 CCGGCTAAACGCCCACACGCTCGTTTCATGGGTTGACTTAGGAATATGGAGTTCATCCCCAATCT
** * *
35750566 AAGCATATGGAGTTCATTCCTAGTCTAAGATCAAACCGGACCGAGGGTTGCGACAGCAAGTTCGG
66 AAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTGCGACAGCAAGTTCGG
* * * * * * * *
35750631 TAGCACACAGGGGGGATCGGGTCGATCCCCGTCTTGCACATTCTGCCTCT-CTAGCCGGCTGAGC
131 CAGCACACAAGGGGGACCGGGCCAATCCCCGGCTTGCACATTCTGCCTCTACGA-CCGGCTGAGA
* *
35750695 GCCCGCACGCCCGTTTCATGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
195 GCCCGCACGCCCGTTTCATGGGTGGGCTTAAGCATAGGGACTTCATTCCATGTCTAAGCCCCAGC
* * * * *
35750760 CAGACCGAGGGTTGTGGTAGCGGGACTGGCAGC-TCACAGAGGGGGATCGGGCCGATCCCCGGCT
260 CAGACCGAGGGTTGTGGCAGCAGGACCGGCAGCAT-ACAGAGGGGGATCGGGCCAATCCCCGGAT
* * * *
35750824 TGCGCATTTTGCCTCTTCGACCGGCTCAGCGCCCGCACGCTCATTTCGTAGGTTGACTTATGCAT
324 TGCGCATTTTGCCTCATCGACCGGCTCAACGCCCCCACGCTCATTTCATAGGTTGACTTATGCAT
* ** * * **
35750889 ACGGAGTTCATTCCAAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGTAAGATTGACAGCTT
389 ACGGAGTTCATTCCAAATCTAAGATCAAACCAAACCGAGGGTTGCGGTAGTAAGATCGACAGCAC
* * * * *
35750954 ATAGTGGGGGATCAAGCTGATCCCCGACTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGT
454 ATAGGGGGGGACCAAGCTGATCCCCGACTTGCGCATTCTACCTCTCCGGCCAGCTGAACGCCCGC
* ** *
35751019 ACGTTCGTTTCATGGGTTAGCTTAGGCATATGGAGTTCATTCC-TAGTCTAAGCATACGGAGTTC
519 ACGCTCACTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCATACGGAGTTC
35751083 ATTCCCAATCTAAGATTGAATCGATCAGAGGGTTGTGGTAGCAGGACCAATAGCAGGATCGACAG
583 ATTCCCAATCTAAGATTGAATCGATCAGAGGGTTGTGGTAGCAGGACCAATAGCAGGATCGACAG
35751148 CACGCAGAGGGGGACCGGGCTGATCTGCGGCTTGCGCATTATGCCTCTCTTG
648 CACGCAGAGGGGGACCGGGCTGATCTGCGGCTTGCGCATTATGCCTCTCTTG
* * *
35751200 CCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGAATATGGAGTTCATCTCCAATCT
1 CCGGCTAAACGCCCACACGCTCGTTTCATGGGTTGACTTAGGAATATGGAGTTCATCCCCAATCT
* * ** * * * *
35751265 AAGCATACAGAGTTCATTCCCAGTGTGAGATCGGACTGGACCAAGGGTTGCGGCAGTAGGTTCGG
66 AAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTGCGACAGCAAGTTCGG
* * * * *
35751330 CAGCACGCAAGGGGGCCCGGGCCAATCCCCGGCTTGCGCATTTTGCCTCTACGATCGGCTGAGAG
131 CAGCACACAAGGGGGACCGGGCCAATCCCCGGCTTGCACATTCTGCCTCTACGACCGGCTGAGAG
* * * * * * * *
35751395 CCCGCATGCTCGTTTCGTGGGTGGGCTTAGGCATAGGGTCTTTATTCCATGTCTAAGCCCTAGCT
196 CCCGCACGCCCGTTTCATGGGTGGGCTTAAGCATAGGGACTTCATTCCATGTCTAAGCCCCAGCC
* * * * * * *
35751460 GGACCGAGGGTTGTGGCAGCAGGACCGGTAGCATGCAGGGGGGGATTGGGTCAATCCTCGGATTG
261 AGACCGAGGGTTGTGGCAGCAGGACCGGCAGCATACAGAGGGGGATCGGGCCAATCCCCGGATTG
* ** * * *
35751525 CGTATTTTGCCTCATCGGTCGGCTCAACGCCCCCGCGCTCGTTTCATGGGTTGACTTATGCATAC
326 CGCATTTTGCCTCATCGACCGGCTCAACGCCCCCACGCTCATTTCATAGGTTGACTTATGCATAC
* * * * *
35751590 GGAGTTCATTCCAAATCTAAGATCAAACCAAACTGAGGGTTGTGGTAGTAGGATCGATAGCACGT
391 GGAGTTCATTCCAAATCTAAGATCAAACCAAACCGAGGGTTGCGGTAGTAAGATCGACAGCACAT
* * * * * * *
35751655 AGGGGGGGACCGAGCTGATCCCTGGCTTGTGCATTCTGCCTCTCCGGCCAGCTGAACGCCTGCAT
456 AGGGGGGGACCAAGCTGATCCCCGACTTGCGCATTCTACCTCTCCGGCCAGCTGAACGCCCGCAC
* *
35751720 GCTCACTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATT
521 GCTCACTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
* *
35751785 CCTAGTCTAAGATT
586 CCCAATCTAAGATT
35751799 TTGAGCCACG
Statistics
Matches: 499, Mismatches: 97, Indels: 6
0.83 0.16 0.01
Matches are distributed among these distances:
699 495 0.99
700 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (699 bp):
CCGGCTAAACGCCCACACGCTCGTTTCATGGGTTGACTTAGGAATATGGAGTTCATCCCCAATCT
AAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTGCGACAGCAAGTTCGG
CAGCACACAAGGGGGACCGGGCCAATCCCCGGCTTGCACATTCTGCCTCTACGACCGGCTGAGAG
CCCGCACGCCCGTTTCATGGGTGGGCTTAAGCATAGGGACTTCATTCCATGTCTAAGCCCCAGCC
AGACCGAGGGTTGTGGCAGCAGGACCGGCAGCATACAGAGGGGGATCGGGCCAATCCCCGGATTG
CGCATTTTGCCTCATCGACCGGCTCAACGCCCCCACGCTCATTTCATAGGTTGACTTATGCATAC
GGAGTTCATTCCAAATCTAAGATCAAACCAAACCGAGGGTTGCGGTAGTAAGATCGACAGCACAT
AGGGGGGGACCAAGCTGATCCCCGACTTGCGCATTCTACCTCTCCGGCCAGCTGAACGCCCGCAC
GCTCACTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
CCCAATCTAAGATTGAATCGATCAGAGGGTTGTGGTAGCAGGACCAATAGCAGGATCGACAGCAC
GCAGAGGGGGACCGGGCTGATCTGCGGCTTGCGCATTATGCCTCTCTTG
Found at i:35751773 original size:26 final size:26
Alignment explanation
Indices: 35751743--35751795 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35751733 GTTGGCTTAG
35751743 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
35751769 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
35751795 G
1 G
35751796 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:35751952 original size:15 final size:16
Alignment explanation
Indices: 35751914--35751952 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
35751904 AACTGGCGGC
35751914 ATTGGGGGTTCCGACA
1 ATTGGGGGTTCCGACA
35751930 ATTGGGGGTTCCGACA
1 ATTGGGGGTTCCGACA
35751946 ATTGGGG
1 ATTGGGG
35751953 CCCGGGAGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.18, C:0.15, G:0.41, T:0.26
Consensus pattern (16 bp):
ATTGGGGGTTCCGACA
Found at i:35753044 original size:342 final size:343
Alignment explanation
Indices: 35752466--35753202 Score: 932
Period size: 342 Copynumber: 2.2 Consensus size: 343
35752456 TGAGCGCCTG
* * * *
35752466 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAACCCCAGTCAAAGCATACGTAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCACACGGAGTTC
* * *
35752531 ATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGATAGCAGAATCAGCAGCATACAGGGGGG
66 ATTCCCAATCTAAGATCAGACCGAATCGAGGGTTGCGATAGCAGAATCAGCAGCATACAGGGGGG
* * * ** * *
35752596 ATCGGGTCGATCCCCAGCTTATGCATTCTGCCTCTTTGATCGACTGAGTGCCCGCAGCTAGTTTC
131 ATCAGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCAGCTAGTTTC
* * ** *
35752661 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGACTTT-TG
196 ATGGGTTGGCTTAGGCATAGGAAGGTCATTCCATGTCTAAGCCCCAGCCAAACCAAG-CTTTATG
* * *
35752725 GCAGCGGGATCGACAGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTT
260 GCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCAATCCCCGGCTTGCACATTATGCCTCTT
35752790 CGATCGGCTCAGCACC-CA
325 CGATCGGCTCAGCACCTCA
* ** *
35752808 CACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCACATGGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCACACGGAGTTC
* * * *
35752873 ATTCCCAATCTAAGATCAGATCGAA-CTGAGGGTTGCGGTAGTAGGATC-GACAGCACGTA-A-G
66 ATTCCCAATCTAAGATCAGACCGAATC-GAGGGTTGCGATAGCAGAATCAG-CAGCA--TACAGG
* * *
35752934 GGGGATCAGGCCGATCCCC-GCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTT
127 GGGGATCAGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCA-GCTA
* * *
35752998 GTTTCTTGGGTTGGCTTAGGCATAGGAAGGTCATTCCATGTCTAAGCCCCAGTCAAACCAAGGTT
191 GTTTCATGGGTTGGCTTAGGCATAGGAAGGTCATTCCATGTCTAAGCCCCAGCCAAACCAAGCTT
* * *
35753063 TATTGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCAATCCTCGGCTTGCGCATTATGCC
256 TATGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCAATCCCCGGCTTGCACATTATGCC
* * ** *
35753128 TTTTCGGTCGGCTCAGTGCCTGA
321 TCTTCGATCGGCTCAGCACCTCA
* * * *
35753151 -ATGCTCGTTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTAAG
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
35753203 ATCGAACTAG
Statistics
Matches: 337, Mismatches: 51, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
341 38 0.11
342 295 0.88
343 2 0.01
344 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (343 bp):
CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCACACGGAGTTC
ATTCCCAATCTAAGATCAGACCGAATCGAGGGTTGCGATAGCAGAATCAGCAGCATACAGGGGGG
ATCAGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCAGCTAGTTTC
ATGGGTTGGCTTAGGCATAGGAAGGTCATTCCATGTCTAAGCCCCAGCCAAACCAAGCTTTATGG
CAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCAATCCCCGGCTTGCACATTATGCCTCTTC
GATCGGCTCAGCACCTCA
Found at i:35754966 original size:157 final size:157
Alignment explanation
Indices: 35754674--35755246 Score: 413
Period size: 157 Copynumber: 3.6 Consensus size: 157
35754664 GACCGGGTCG
* * * * *
35754674 ATCCCCGGCTTGCGCATTATGCCTCTCCGACTGGCTGAGCGCCCGCACGCTTGTTTTGTGGGTTG
1 ATCCCCGACTTGCGCATTATGCCTCTCCGACAGGCTAAGCGCCCGCACGCTCGTTTTATGGGTTG
* * * *
35754739 GCTTAGGCTTATGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGGCAGTAGGA
66 GCTTAGACGTATGGAGTTCATTCCATGTCTAAGCCACAACCGGACCGAAGGTTGTGGCAGTAGGA
*
35754804 TCGGCAGCATGTAGGGGGCCCAGGCCA
131 CCGGCAGCATGTAGGGGGCCCAGGCCA
* *
35754831 ATCCCCGACTTGCGCATTCTGCCTCTCCGACAGGCTAAGCGTCCGCACGAC-CGTTTTATGGGTT
1 ATCCCCGACTTGCGCATTATGCCTCTCCGACAGGCTAAGCGCCCGCACG-CTCGTTTTATGGGTT
* * *
35754895 GGCTTCGACAGTA-GGAGTTCATTCCATGTCTAAGCCACAATCGGACCGAGGGTTGTGGCA--AC
65 GGCTTAGAC-GTATGGAGTTCATTCCATGTCTAAGCCACAACCGGACCGAAGGTTGTGGCAGTA-
* ** **
35754957 GAGACCGGCAGCACACAG-AGGGGGATCAGGCTG
128 G-GACCGGCAG--CA-TGTAGGGGGCCCAGGCCA
* * * * **
35754990 ATCCCCGGCTTGCACATTATGCCTCTTCGATC-GGCTCAA-CGCCCGCACGCTTGTTTCGTGGGT
1 ATCCCCGACTTGCGCATTATGCCTCTCCGA-CAGGCT-AAGCGCCCGCACGCTCGTTTTATGGGT
* * * * * * * * *
35755053 TGACTTTTG-CATACGGAGTTCATTCCCA-GTCTAAG--ATCGGATCAGACCGAGGGTTGTGGTA
64 TGGC-TTAGACGTATGGAGTTCATT-CCATGTCTAAGCCA-C-AACCGGACCGAAGGTTGTGGCA
* * * * * * *
35755114 GCAGGATCGACAGTACACTG--GGGGGACCGGGTCG
125 GTAGGACCGGCAG--CA-TGTAGGGGGCCCAGGCCA
* * * *
35755148 ATCCCC-AGCTTGCGCATTCTACCTCTCCGATC-GG-TCGAGCGCCCGCACGCTCGTTTCATGGG
1 ATCCCCGA-CTTGCGCATTATGCCTCTCCGA-CAGGCT-AAGCGCCCGCACGCTCGTTTTATGGG
* * * *
35755210 TTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGC
63 TTGGCTTAGACGTATGGAGTTCATTCCATGTCTAAGC
35755247 ATACAGAGTT
Statistics
Matches: 341, Mismatches: 53, Indels: 42
0.78 0.12 0.10
Matches are distributed among these distances:
155 1 0.00
156 1 0.00
157 122 0.36
158 92 0.27
159 113 0.33
160 11 0.03
161 1 0.00
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.24
Consensus pattern (157 bp):
ATCCCCGACTTGCGCATTATGCCTCTCCGACAGGCTAAGCGCCCGCACGCTCGTTTTATGGGTTG
GCTTAGACGTATGGAGTTCATTCCATGTCTAAGCCACAACCGGACCGAAGGTTGTGGCAGTAGGA
CCGGCAGCATGTAGGGGGCCCAGGCCA
Found at i:35755197 original size:158 final size:159
Alignment explanation
Indices: 35754587--35755245 Score: 580
Period size: 158 Copynumber: 4.2 Consensus size: 159
35754577 CCTAGTCGAA
* * * ** * *
35754587 GCATACAGAGTTCATTCCCA-GACTAAGATCAGACCGGACCGAGGGTTGCGATAGTAGGATCTGC
1 GCATACGGAGTTCATTCCCATGTCTAAGATC-GACCGGACCGAGGGTTGTGGCAGCAGGATCGGC
* *
35754651 AGCACACAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACTGGCTGAGCG
65 AGCACACAGAGGGGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACAGGCTGAGCG
* **
35754715 CCCGCACGCTTGTTTTGTGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * * *
35754745 GCTTATGGAGTTCATT-CCATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGGCAGTAGGATCGGC
1 GCATACGGAGTTCATTCCCATGTCTAAGATCGA-CCGGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * * * *
35754809 AG--CA-TGTAGGGGGCCCAGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGACAGGCTAAGC
65 AGCACACAG-AGGGGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACAGGCTGAGC
* * *
35754871 GTCCGCACGAC-CGTTTTATGGGTTGGCTTCG
129 GCCCGCACG-CTCGTTTCATGGGTTGGCTTAG
* * * * *
35754902 ACAGTA-GGAGTTCATT-CCATGTCTAAGCCA-CAATCGGACCGAGGGTTGTGGCAAC-GAGACC
1 GCA-TACGGAGTTCATTCCCATGTCTAAG--ATCGACCGGACCGAGGGTTGTGGCAGCAG-GATC
* * *
35754963 GGCAGCACACAGAGGGGGATCAGG-CTGATCCCCGGCTTGCACATTATGCCTCTTCGATC-GGCT
62 GGCAGCACACAGAGGGGGACCAGGTC-GATCCCCGGCTTGCGCATTATGCCTCTCCGA-CAGGCT
* * * * * **
35755026 CAACGCCCGCACGCTTGTTTCGTGGGTTGACTTTT
125 GAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
35755061 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCAGACCGAGGGTTGTGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCATGTCTAAGATC-GACCGGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * * *
35755125 AGTACACTG-GGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTACCTCTCCGATC-GG-TCGAG
65 AGCACACAGAGGGGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGA-CAGGCT-GAG
35755187 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
128 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
35755219 GCATACGGAGTTCATT-CTATGTCTAAG
1 GCATACGGAGTTCATTCCCATGTCTAAG
35755246 CATACAGAGT
Statistics
Matches: 403, Mismatches: 75, Indels: 46
0.77 0.14 0.09
Matches are distributed among these distances:
155 1 0.00
156 3 0.01
157 127 0.32
158 148 0.37
159 118 0.29
160 6 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCATGTCTAAGATCGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCA
GCACACAGAGGGGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACAGGCTGAGCGC
CCGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:35755249 original size:26 final size:26
Alignment explanation
Indices: 35755219--35755271 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35755209 GTTGGCTTAG
*
35755219 GCATACGGAGTTCATT-CTATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
35755245 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
35755271 G
1 G
35755272 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:35758471 original size:26 final size:26
Alignment explanation
Indices: 35758430--35758482 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35758420 CTGGTCCAAT
*
35758430 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
35758456 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
35758482 C
1 C
35758483 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:35759199 original size:25 final size:26
Alignment explanation
Indices: 35759161--35759212 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
35759151 GGCTTAAAAT
35759161 CTTAGACTGAGAATGAACTCC-TATG
1 CTTAGACTGAGAATGAACTCCGTATG
35759186 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
35759212 C
1 C
35759213 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:35759613 original size:159 final size:155
Alignment explanation
Indices: 35759185--35759624 Score: 407
Period size: 159 Copynumber: 2.8 Consensus size: 155
35759175 GAACTCCTAT
* * * * *
35759185 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAG
* * * * *
35759250 CCAGCCAGAGAGGCCAAATGTGCAAGTCGAGGATCGGCCTGGTCCCCCCCTGCGTGCTGTCGATC
66 CCAGCGA-AGAGG-CAAATGCGCAAGTCGGGGATC-GCCTGGT-CCCCCCTACGTGCTGCCGATC
* ** *
35759315 CTGCTCCCACAACCATTGATCCGGTTTGA
127 CCGCTCCCACAACCATTGATCCGACTGGA
* * * * * * * *
35759344 TCTTAGAC-TGGGAATGAAGTTCGTATGCATAAGTCAACCCATGAAACGAGCATGCAGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCA
* ** *
35759408 GCCAGCCGAAGAGGCATAATGCGCAAGTAGGGGATCGACCCAGTCCCCCTCTACGTGCTGCCGGT
65 GCCAG-CGAAGAGGCA-AATGCGCAAGTCGGGGATCG-CCTGGTCCCCC-CTACGTGCTGCCGAT
* * * * *
35759473 CCCGCTGCCATAATCC-TTGGTCTGACTGGG
126 CCCGCTCCCACAA-CCATTGATCCGACTGGA
* * * *
35759503 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAATGAAACGGGTATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAG
* * *
35759568 CCAGTCGAAGAGGCAGAATGCACAAGCCGGGGATCAGTCTGGTCCCCCCTACGTGCT
66 CCAG-CGAAGAGGCA-AATGCGCAAGTCGGGGATC-GCCTGGTCCCCCCTACGTGCT
35759625 ATCGATCCTA
Statistics
Matches: 222, Mismatches: 51, Indels: 17
0.77 0.18 0.06
Matches are distributed among these distances:
158 18 0.08
159 198 0.89
160 6 0.03
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAG
CCAGCGAAGAGGCAAATGCGCAAGTCGGGGATCGCCTGGTCCCCCCTACGTGCTGCCGATCCCGC
TCCCACAACCATTGATCCGACTGGA
Found at i:35761622 original size:26 final size:26
Alignment explanation
Indices: 35761593--35761645 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35761583 CCGGTCTGAT
35761593 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
35761619 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35761645 C
1 C
35761646 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35762366 original size:26 final size:26
Alignment explanation
Indices: 35762315--35762367 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
35762305 GGCTCAAAAT
* *
35762315 CTTAGACTGGGAGTGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35762341 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
35762367 C
1 C
35762368 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35762694 original size:26 final size:26
Alignment explanation
Indices: 35762655--35762705 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
35762645 AGTCTGATCA
35762655 TAGACTAGGAATGAACTCCATATGCT
1 TAGACTAGGAATGAACTCCATATGCT
* *
35762681 TAGACTGGGCATGAACTCCATATGC
1 TAGACTAGGAATGAACTCCATATGC
35762706 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCATATGCT
Found at i:35763069 original size:26 final size:26
Alignment explanation
Indices: 35763031--35763083 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35763021 CCGATTTGAT
*
35763031 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35763057 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35763083 C
1 C
35763084 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35763483 original size:159 final size:156
Alignment explanation
Indices: 35763056--35763484 Score: 382
Period size: 159 Copynumber: 2.7 Consensus size: 156
35763046 AACTCTGTAT
* * * *
35763056 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTGCGGTGCTCAGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGGA-TTGCGGCGCTCAGC
* * * *
35763121 CGACCGGAGAGGTAGAATGCGCAAGCCAGAGATC-GATCGGGTCCTCCCTTGCATGCTGTCGATC
65 CGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCAGATC-GGTCC-CCCTTGCATGCTGCCGATC
* *
35763185 CTGCTATCGCAACCCTCTGTCCGGTCTGA
128 CTGCTACCACAACCCTCTGTCCGGTCTGA
* * * * * * * *
35763214 TCTTAGACAAGGAATGAACTCCGTATGCATAAGTCAACCTAAGAAATGAGCTTGCGGGCACTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATG-GATTGC-GGCGCTCAG
* ** * ** * *
35763279 CTGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCCAGTCCCCCTCTGCGTGCTGCC-AGT
64 CCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCAGATCGGTCCCCCT-TGCATGCTGCCGA-T
* *
35763343 -CTCGCTACCACAACCCTC-GATCTGG-CTGGG
127 CCT-GCTACCACAACCCTCTG-TCCGGTCT-GA
* * * *
35763373 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTATGCGGCCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGGAT-TGCGG-CGCTCAG
* * * * *
35763438 CCGACCGAAAAGGCAGAATGTGCAAGTCGGGGATCAGTTCGGTCCCC
64 CCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCAGATCGGTCCCC
35763485 ACTATGTGTG
Statistics
Matches: 211, Mismatches: 50, Indels: 19
0.75 0.18 0.07
Matches are distributed among these distances:
158 59 0.28
159 150 0.71
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGGATTGCGGCGCTCAGCC
GACCGAAGAGGCAGAATGCGCAAGCCAGGGATCAGATCGGTCCCCCTTGCATGCTGCCGATCCTG
CTACCACAACCCTCTGTCCGGTCTGA
Found at i:35764608 original size:159 final size:158
Alignment explanation
Indices: 35764253--35764746 Score: 469
Period size: 158 Copynumber: 3.1 Consensus size: 158
35764243 GGCTCAAAAT
* * * *
35764253 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * * * * * * * *
35764318 CGGTCGAAGAGGTAGAATGCGCAAGCCGGGGATCGACCTGGTCTCCCCTGCGTGCTGTCAATCCT
66 CAGCCGAAGAAGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCATGCTGCCAATCCT
* *
35764383 GCTACCACAACCCTCGGTCCATTCCAAT
131 GCTACCACAACCCTCAGTCCATTCCAAG
* * * * *
35764411 ATTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTGAGT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * *
35764476 CAGCCGAAGAAGCATAATGCGCAAGCTAGGGATC-AGCCCGGTCCCCCTCTGCATGCTGCCAGTC
66 CAGCCGAAGAAGCAGAATGCGCAAGCCAGGGATCGA-CCCGGTCCCCC-CTGCATGCTGCCAATC
* * ***
35764540 GC-GCTGCCACAACCCTCAGTCCGGTT-GGGG
129 -CTGCTACCACAACCCTCAGTCC-ATTCCAAG
* * **
35764570 CTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GCCGTGCGGGTGCTCAG
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-CGTGCGGGCACTCAG
* * * * * * * *
35764634 CC-GATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCTCCTGCGTGCTGCCGATC
65 CCAG-CCGAAGAAGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCATGCTGCCAATC
* * * * *
35764698 CTGTTGCCGCAACCCTC-GATCCAGTCCAAT
129 CTGCTACCACAACCCTCAG-TCCATTCCAAG
*
35764728 CTTAGACTGGGAATGAACT
1 CTTAGACTAGGAATGAACT
35764747 TCTTATGCTT
Statistics
Matches: 268, Mismatches: 58, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
157 4 0.01
158 140 0.52
159 121 0.45
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
CAGCCGAAGAAGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCATGCTGCCAATCCT
GCTACCACAACCCTCAGTCCATTCCAAG
Found at i:35764779 original size:26 final size:26
Alignment explanation
Indices: 35764728--35764780 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35764718 CCAGTCCAAT
* *
35764728 CTTAGACTGGGAATGAACTTCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35764754 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35764780 C
1 C
35764781 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35765176 original size:158 final size:157
Alignment explanation
Indices: 35764887--35765228 Score: 409
Period size: 158 Copynumber: 2.2 Consensus size: 157
35764877 TGTCGATCCC
* * * * *
35764887 GCTGCTGGTCCTGCTGCCATAACCCTTGGTCCGGCTGGGGCTTAGATATGGAATAAACTCCGCAT
1 GCTGCCGGTCCTGCTGCCACAACCCTTAGTCCAGCTGGGGCTTAGACATGGAATAAACTCCGCAT
* * * **
35764952 ACCTAAGTCAACCCATAAAATGAATGTGTGGGTGCTCAGCCAATCGGAGAGGCAGAATGCGCAAG
66 ACCTAAGCCAA-CCATAAAATGAACGTGCGGGCACTCAGCCAATCGGAGAGGCAGAATGCGCAAG
35765017 CCGAGGATCG-CCCGATCCCCCTCTGCGT
130 CCGAGGATCGACCCGATCCCCC-CTGCGT
* * * ** *
35765045 GCTGCCGGTCCCGCTGCCACAACCCTTAGTCTAGCTGGGGCTTAGACATGGAATGAACTTTGTAT
1 GCTGCCGGTCCTGCTGCCACAACCCTTAGTCCAGCTGGGGCTTAGACATGGAATAAACTCCGCAT
* * * *
35765110 GCCTAAGCCAA-CATACGAAATGAGCGTGCGGGCACTCAGCCGATCGGAGAGGCAGAATGCGTAA
66 ACCTAAGCCAACCATA--AAATGAACGTGCGGGCACTCAGCCAATCGGAGAGGCAGAATGCGCAA
*
35765174 GCCGAGGATCGACCCGGTCCCCCCTGCGT
129 GCCGAGGATCGACCCGATCCCCCCTGCGT
* * * *
35765203 GCTACCGATCCTGCTGTCGCAACCCT
1 GCTGCCGGTCCTGCTGCCACAACCCT
35765229 CGGTCCGATT
Statistics
Matches: 155, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
156 4 0.03
158 141 0.91
159 10 0.06
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTGCCGGTCCTGCTGCCACAACCCTTAGTCCAGCTGGGGCTTAGACATGGAATAAACTCCGCAT
ACCTAAGCCAACCATAAAATGAACGTGCGGGCACTCAGCCAATCGGAGAGGCAGAATGCGCAAGC
CGAGGATCGACCCGATCCCCCCTGCGT
Found at i:35765272 original size:26 final size:26
Alignment explanation
Indices: 35765243--35765295 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35765233 CCGATTCGAT
35765243 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
35765269 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
35765295 C
1 C
35765296 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:35766344 original size:158 final size:157
Alignment explanation
Indices: 35765992--35766345 Score: 372
Period size: 157 Copynumber: 2.2 Consensus size: 157
35765982 CTCCATATGA
**
35765992 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAACTCAACC
** * * * *
35766057 GGTCGGAGACGCAGAATGCGCAAGCCGAGGATCGACCTGATCCCCCCTACATGCTATCAATCCTG
66 GACCGAAAACGCAGAATGCGCAAGCCGAGGATCGACCTGATCCCCCCTACATGCTACCAATCCCG
* ** *
35766122 CTGCCACAACCCTCGATCTGGTCTGAT
131 CTGCCACAACCCTCCATCCAGTCTGAC
* ** * ** * * * *
35766149 TTAGA-TTGGGAACAAACTCCGTATGCATAAGTGAACCCACGAAACGAGTGTTCGGGAACTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAACTCAAC
* * * * * * *
35766213 CGACCGAAAAGGCATAATGCGCAAGCCGAGGATCG-GCTCGATCCCACTCTGCATGCTGCCAGTC
65 CGACCGAAAACGCAGAATGCGCAAGCCGAGGATCGACCT-GATCCC-CCCTACATGCTACCAATC
*
35766277 CCGCTGCCACAACCCTCCATCCAGT-TGGGC
128 CCGCTGCCACAACCCTCCATCCAGTCT-GAC
*
35766307 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
35766346 TCAAATGGGT
Statistics
Matches: 155, Mismatches: 37, Indels: 9
0.77 0.18 0.04
Matches are distributed among these distances:
156 3 0.02
157 86 0.55
158 65 0.42
159 1 0.01
ACGTcount: A:0.27, C:0.31, G:0.24, T:0.18
Consensus pattern (157 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAACTCAACC
GACCGAAAACGCAGAATGCGCAAGCCGAGGATCGACCTGATCCCCCCTACATGCTACCAATCCCG
CTGCCACAACCCTCCATCCAGTCTGAC
Found at i:35766372 original size:158 final size:157
Alignment explanation
Indices: 35765992--35766409 Score: 423
Period size: 158 Copynumber: 2.7 Consensus size: 157
35765982 CTCCATATGA
* * * *
35765992 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGAGCTCAGCC
* * * *
35766057 GGTCGGAGACGCAGAATGCGCAAGCCGAGGATCGACCTGATCCCCCCTACATGCTATCAATCCTG
66 GATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCTGATCCCCCCTACATGCTACCAATCCCG
* ** *
35766122 CTGCCACAACCCTCGATCTGGTCTGAT
131 CTGCCACAACCCTCCATCCAGTCTGAC
* ** * ** * * *
35766149 TTAGA-TTGGGAACAAACTCCGTATGCATAAGTGAACCCACGAAACGAGTGTTCGGGAACTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGAGCTCAGC
* * * * * * * * *
35766213 CGACCGAAAAGGCATAATGCGCAAGCCGAGGATCG-GCTCGATCCCACTCTGCATGCTGCCAGTC
65 CGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCT-GATCCC-CCCTACATGCTACCAATC
*
35766277 CCGCTGCCACAACCCTCCATCCAGT-TGGGC
128 CCGCTGCCACAACCCTCCATCCAGTCT-GAC
* * * *
35766307 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATC-AAATGGGTGTACGGGCGCTCAGC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-CGAAACGAGTGTACGGGAGCTCAGC
*
35766371 CGATCGGAGAGAGCAGAATGCGCAAGCTG-GGATCGACCT
65 CGATCGGAGAG-GCAGAATGCGCAAGCCGAGGATCGACCT
35766410 AGTCACCCCT
Statistics
Matches: 204, Mismatches: 49, Indels: 14
0.76 0.18 0.05
Matches are distributed among these distances:
156 3 0.01
157 86 0.42
158 96 0.47
159 19 0.09
ACGTcount: A:0.27, C:0.30, G:0.26, T:0.18
Consensus pattern (157 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGAGCTCAGCC
GATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCTGATCCCCCCTACATGCTACCAATCCCG
CTGCCACAACCCTCCATCCAGTCTGAC
Found at i:35767218 original size:26 final size:26
Alignment explanation
Indices: 35767180--35767232 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35767170 GGCTCAGAAT
35767180 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35767206 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
35767232 C
1 C
35767233 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35767914 original size:26 final size:26
Alignment explanation
Indices: 35767876--35767928 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35767866 GGCTCAAAAT
35767876 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
35767902 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
35767928 C
1 C
35767929 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:35768125 original size:696 final size:691
Alignment explanation
Indices: 35766769--35768150 Score: 1951
Period size: 696 Copynumber: 2.0 Consensus size: 691
35766759 TTTTTTAAAT
*
35766769 TTTTTTAGAAAGATGTTTGTCCCCCAAATTTGGTAGAGGTGATCCTTTTTATTTTTTGGGCATGC
1 TTTTTTAGAAAGATGTTTGTCCCCCAAATTTGGTAGAGGTGATCCTTTGTATTTTTTGGGCATGC
*
35766834 ACAAAAAATTCAGCTAAAAACTCAAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAGTGTCCCCA
66 ACAAAAAATTCAGCTAAAAACTCAAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAATGTCCCCA
*
35766899 TTTAAGACACTTAATGGCTACTGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGCG
131 TTTAAGACACTTAATAGCTACTGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGCG
* * * *
35766964 AGTTCTCGAGGTTTGATGAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
196 AGTTCACGAGGTTTGATGAGGACAGGGCGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
** ** *
35767029 TCATGTGTGCACAGCCCCCGGCCCCCCAATCATTGGAACCCCCAATGTCGCTGGTTAGGCTCTCC
261 TCATGTAAGCACAGCCCCCGGCCCCCCAATCACCGGAACCCCCAATGCCGCTGGTTAGGCTCTCC
* * * * *
35767094 GGTGATGCTCCGACGATGGTGCCCCGGGCAAAAAAGTTCGACACCAGCACATGCTCGAGCCCAGT
326 GGCGATGATCCGACGATGGTGCCCCGGGCAAAAAAATGCGACACCAGCACATGCTCGAGCCCAGA
* * * *
35767159 ATGTGCATCGTGGCTCAGAATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAAC
391 ATGTGCACCATGGCTCAAAATCTTAGACTAGGAATGAACTCCATATGCTTAGACATGGAATGAAC
35767224 TCCGTATGCCTAAGCCAACCCATGAAACGATCATGCGGGCACTCAGTCGACCGGAGAGACAGAAT
456 TCCGTATGCCTAAGCCAACCCATGAAACGATCATGCGGGCACTCAGTCGACCGGAGAGACAGAAT
* * *
35767289 GCACAAGCCAGGGATTAACCTGATCCCCCCCTACGTGCTGTCAATCCTACTACTGCAACCCTCGA
521 GCACAAGCCAGGGATGAACCAGATCCCCCCCTACGTGCTGTCAATCCTACTACCGCAACCCTCGA
* * * **
35767354 TCCGGTCCAATTTAGACTAGCAATGAGCTCCCTATGCATAAGTCAACCCATGAAATGAGTGTGTG
586 TCCGGTCCAATTTAGACTAGCAATGAACTCCCTATGCATAAGTCAACCCACGAAATGAGCGTGCA
* *
35767419 GGCGCTGAGCCGACCGAAGAAGCATAATGCGTAAGCGAGGA
651 GGCACTGAGCCGACCGAAGAAGCATAATGCGCAAGCGAGGA
* *
35767460 TTTTTTAGAAATA-GTTATGT-CCCCAAATTTGGTAGAGGTGATCC-TTGTA-TTTTTGTTGCAT
1 TTTTTTAGAAAGATGTT-TGTCCCCCAAATTTGGTAGAGGTGATCCTTTGTATTTTTTG-GGCAT
* *
35767521 GCACAAAAAATTTCAGCTAAAAACTCGAAGTGGAGAAGATTTTGTGACTGTTTGAAAAAAATGTC
64 GCACAAAAAA-TTCAGCTAAAAACTCAAAGTGGAGAAGATTTTGTGACCGTTTG-AAAAAATGTC
*
35767586 CCCATTTCAA-ACACTTTAATAGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGG
127 CCCATTT-AAGACAC-TTAATAGCTACT-GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAG
* * * * *
35767650 GGGTGTGAGTTCACGTGGTTTGATTAGGGACAGGGCGCCAATATAATGGCTAAGTACCAGCACCC
189 GGGTGCGAGTTCACGAGGTTTGATGA-GGACAGGGCGCCAATATAAGGGCCAAGTACCAGCACCC
*
35767715 ATCACACATCATGTAAGCACA-CCCCCTGGCCCCCCCAATCGCCGGAACCCCCAATGCCG-TCGG
253 ATCACACATCATGTAAGCACAGCCCCC-GG-CCCCCCAATCACCGGAACCCCCAATGCCGCT-GG
* * *
35767778 TTAGGCTCTCCGGCGATGATTCGATGATGGTGCCCTGGGCGAAAAAAATGC-AGCACCAGCACAT
315 TTAGGCTCTCCGGCGATGATCCGACGATGGTGCCCCGGGC-AAAAAAATGCGA-CACCAGCACAT
* *
35767842 G-TCCGATCCCAGAATGTGCACCATGGCTCAAAATCTTAGACTAGGAATGAACTCCGTATGCTTA
378 GCT-CGAGCCCAGAATGTGCACCATGGCTCAAAATCTTAGACTAGGAATGAACTCCATATGCTTA
* * *
35767906 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGT-GTGCGGGCGCTCAGTCGG
442 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-TCATGCGGGCACTCAGTCGA
* * ** ** * *
35767970 CTGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCAG-T-CCCCCCTGCGTGCTGTCGATCCTA
506 CCGGAGAGACAGAATGCACAAGCCAGGGAT-GAACCAGATCCCCCCCTACGTGCTGTCAATCCTA
* * * *
35768033 CTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACC
570 CTACCGCAACCCTCGATCCGGTCCAAT-TTAGACTAGCAATGAACTCCCTATGCATAAGTCAACC
* *
35768098 CACGAAATGAGCGTGCAGGCACTGAGCCGGCCGAAGAGGCATAATGCGCAAGC
634 CACGAAATGAGCGTGCAGGCACTGAGCCGACCGAAGAAGCATAATGCGCAAGC
35768151 CGGGGATCAG
Statistics
Matches: 610, Mismatches: 64, Indels: 29
0.87 0.09 0.04
Matches are distributed among these distances:
688 6 0.01
689 18 0.03
690 68 0.11
691 35 0.06
692 13 0.02
693 62 0.10
694 55 0.09
695 111 0.18
696 238 0.39
697 4 0.01
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.23
Consensus pattern (691 bp):
TTTTTTAGAAAGATGTTTGTCCCCCAAATTTGGTAGAGGTGATCCTTTGTATTTTTTGGGCATGC
ACAAAAAATTCAGCTAAAAACTCAAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAATGTCCCCA
TTTAAGACACTTAATAGCTACTGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGCG
AGTTCACGAGGTTTGATGAGGACAGGGCGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
TCATGTAAGCACAGCCCCCGGCCCCCCAATCACCGGAACCCCCAATGCCGCTGGTTAGGCTCTCC
GGCGATGATCCGACGATGGTGCCCCGGGCAAAAAAATGCGACACCAGCACATGCTCGAGCCCAGA
ATGTGCACCATGGCTCAAAATCTTAGACTAGGAATGAACTCCATATGCTTAGACATGGAATGAAC
TCCGTATGCCTAAGCCAACCCATGAAACGATCATGCGGGCACTCAGTCGACCGGAGAGACAGAAT
GCACAAGCCAGGGATGAACCAGATCCCCCCCTACGTGCTGTCAATCCTACTACCGCAACCCTCGA
TCCGGTCCAATTTAGACTAGCAATGAACTCCCTATGCATAAGTCAACCCACGAAATGAGCGTGCA
GGCACTGAGCCGACCGAAGAAGCATAATGCGCAAGCGAGGA
Found at i:35768245 original size:159 final size:158
Alignment explanation
Indices: 35767901--35768403 Score: 537
Period size: 158 Copynumber: 3.2 Consensus size: 158
35767891 AACTCCGTAT
* * *
35767901 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * *
35767966 TCGGCTGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCC-AGTCCCCCCTGCGTGCTGTCGATC
66 CCGGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCGA-TCCCCCCTGCGTGCTGTCGATC
* * *
35768030 CTACTACCGCAACCCTCGATCCGGTCCGA
130 CCACTACCACAACCCTCGATCCGCTCCGA
* * * * * *
35768059 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * *
35768123 GCCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGTGTGCTGTCGAT
65 GCCGGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCGATCCCCC-CTGCGTGCTGTCGAT
* * * *
35768188 CCCGCTGCCACAACCCTCGATCCAGCT-GGG
129 CCCACTACCACAACCCTCGATCC-GCTCCGA
* * * * * *
35768218 GCTTAGACATGGAATGCACTCCATATGCCTAAGCCAACCCACAAAACGGGCGTACGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * *
35768283 CCGACGGGAGAGGCAGAATGTGCAAGCCGAGGATCAGCCCGATCCCCCCTGCATACCGTCAATCC
66 CCGGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCC
* ** * * *
35768348 TACTACCGTAACCCTCAATCCGATCTGA
131 CACTACCACAACCCTCGATCCGCTCCGA
*
35768376 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
35768404 TTAGACTGGG
Statistics
Matches: 279, Mismatches: 59, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
157 4 0.01
158 144 0.52
159 128 0.46
160 3 0.01
ACGTcount: A:0.25, C:0.32, G:0.26, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCC
CACTACCACAACCCTCGATCCGCTCCGA
Found at i:35768423 original size:25 final size:26
Alignment explanation
Indices: 35768377--35768428 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
35768367 CCGATCTGAT
35768377 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35768403 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35768428 C
1 C
35768429 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35768719 original size:342 final size:341
Alignment explanation
Indices: 35768060--35768806 Score: 941
Period size: 342 Copynumber: 2.2 Consensus size: 341
35768050 CCGGTCCGAT
* * *
35768060 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCAGGCACTGAGC
1 CTTAGACTGGG-ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGC
* * * * *
35768125 CGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGTGTGCTGTCGATCC
65 CAGCCGAAGAGGCATAATGCACAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGATCC
35768190 CGCTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGCACTCCATATGCCTAAGCCAA
130 CGCTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGCACTCCATATGCCTAAGCCAA
* * **
35768255 CCCACAAAACGGGCGTACGGGCACTCAACCGACGGGAGAGGCAGAATGTGCAAGCCGAGGATCAG
195 CCCACAAAACGGGCGTACGGGCACTCAACCGACGGAAGAGGCAGAACGCACAAGCCGAGGATCAG
* **
35768320 CCCGATCCCCCCTGCATACCGTCAATCCTACTACCGTAACCCTCAATCCGATCTGATCTTAGACT
260 CCCGATCCCCCCTGCATACCGCCAATCCTACTACCACAACCCTCAATCCGATCTGATCTTAGACT
35768385 GGGAATGAACTCCGTATG
325 -GGAATGAACTCCGTATG
** *
35768403 CTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTGCGGGCGGTCAGT
1 CTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCG-TGCGGGCACTCAGC
* * * *
35768468 CAGTCGAAGAGGCATAATGCACAAGCCGAGGATC-GACCCGGTCCCCCTTTTGCGTGCTGCCGGT
65 CAGCCGAAGAGGCATAATGCACAAGCCGAGGATCAG-CCCGATCCCCC-TCTGCGTGCTGCCGAT
* * * *
35768532 CTCGCTGCCACTACCCTC-AGTCC-GACTGGGGCTTAGACATGGAATGTACTCCCTATGCCTAAG
128 CCCGCTGCCACAACCCTCGA-TCCAG-CTGGGGCTTAGACATGGAATGCACTCCATATGCCTAAG
* * * *
35768595 CCAACCCACAAAATGGGCGTGC-GGCACTCAACCGATC-GAAGATGTAGAACGCACAAGCCG-GG
191 CCAACCCACAAAACGGGCGTACGGGCACTCAACCGA-CGGAAGAGGCAGAACGCACAAGCCGAGG
* * * * * * ** ** *
35768657 ATC-GACTCGGTCCCCCCTGCGTGCTGCCTATCCTACTGTCACAACCCTTGATCCGGTCTGATCT
255 ATCAG-CCCGATCCCCCCTGCATACCGCCAATCCTACTACCACAACCCTCAATCCGATCTGATCT
*
35768721 TAGACTGGAATGAACTCTGTATG
319 TAGACTGGAATGAACTCCGTATG
* * **
35768744 CTTAGACTAGGGATGAACTCCCTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCACTCA
1 CTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCA
35768807 ACCGGCCAGA
Statistics
Matches: 348, Mismatches: 48, Indels: 18
0.84 0.12 0.04
Matches are distributed among these distances:
341 35 0.10
342 133 0.38
343 92 0.26
344 88 0.25
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (341 bp):
CTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGCC
AGCCGAAGAGGCATAATGCACAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGATCCC
GCTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGCACTCCATATGCCTAAGCCAAC
CCACAAAACGGGCGTACGGGCACTCAACCGACGGAAGAGGCAGAACGCACAAGCCGAGGATCAGC
CCGATCCCCCCTGCATACCGCCAATCCTACTACCACAACCCTCAATCCGATCTGATCTTAGACTG
GAATGAACTCCGTATG
Found at i:35768769 original size:26 final size:25
Alignment explanation
Indices: 35768719--35768770 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
35768709 CCGGTCTGAT
**
35768719 CTTAGACTGGAATGAACTCTGTATG
1 CTTAGACTGGAATGAACTCCCTATG
*
35768744 CTTAGACTAGGGATGAACTCCCTATG
1 CTTAGACT-GGAATGAACTCCCTATG
35768770 C
1 C
35768771 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCCTATG
Found at i:35769135 original size:26 final size:26
Alignment explanation
Indices: 35769085--35769137 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35769075 CCAGTCCAAT
* **
35769085 CTTAGTCTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35769111 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35769137 C
1 C
35769138 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35780706 original size:157 final size:158
Alignment explanation
Indices: 35780323--35780706 Score: 348
Period size: 159 Copynumber: 2.4 Consensus size: 158
35780313 TCCCCCCTGA
* * * * * *
35780323 GTGCTTTCGATCCTGCTGTCATAACCCTCGTCCAGTTCGATCTTAGACTGGGAATGAACTCTGTA
1 GTGCTATCGATCCTGCTGCCACAACCCTCGTCCAGTCCGATCTTAGAATGGGAATGAACTCCGTA
* * * * * * *
35780388 TGCATAAGTCAACCTACAAAACGAGCGTGCGAGCATTGAGTCGACCGAAAAGGCATAATGTGCAA
66 TGCATAAGCCAACCCACAAAACGAGCGTGCGAGCACTCAATCGACCGAAAAGGCAGAATGCGCAA
* *
35780453 GCCGGGGATCAACTCGGTCCCTCTCTAT
131 GCCGGGGATCAACCCGGTCCCTCTCTAC
* * * ** * * * **
35780481 GTGTTGTCGGTCCCACTGCCACAACCCTCGGT-CTGACTGGGGCTTAGACAT-GGAATGAACTCC
1 GTGCTATCGATCCTGCTGCCACAACCCTC-GTCCAGTC-CGATCTTAGA-ATGGGAATGAACTCC
* * ** * * * *
35780544 CTATGCCTAAGCCAACCCAGGAAACTG-GTGTGCGGGCACTCAATCGACCGGAGAGGCAGAATGC
63 GTATGCATAAGCCAACCCACAAAAC-GAGCGTGCGAGCACTCAATCGACCGAAAAGGCAGAATGC
* *
35780608 GTAAGCC-GGGATCAGCCCGAG-CCCTC-CTAC
127 GCAAGCCGGGGATCAACCCG-GTCCCTCTCTAC
*
35780638 GTGCTATCGATCCTGCTGCCACAACCCTCGATCCAGTCCGATCTTAGATTGGGAATGAACTCCGT
1 GTGCTATCGATCCTGCTGCCACAACCCTCG-TCCAGTCCGATCTTAGAATGGGAATGAACTCCGT
35780703 ATGC
65 ATGC
35780707 TTAGATTGGG
Statistics
Matches: 172, Mismatches: 46, Indels: 17
0.73 0.20 0.07
Matches are distributed among these distances:
156 2 0.01
157 52 0.30
158 42 0.24
159 74 0.43
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (158 bp):
GTGCTATCGATCCTGCTGCCACAACCCTCGTCCAGTCCGATCTTAGAATGGGAATGAACTCCGTA
TGCATAAGCCAACCCACAAAACGAGCGTGCGAGCACTCAATCGACCGAAAAGGCAGAATGCGCAA
GCCGGGGATCAACCCGGTCCCTCTCTAC
Found at i:35780709 original size:26 final size:26
Alignment explanation
Indices: 35780680--35780735 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
35780670 CCAGTCCGAT
35780680 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
* *
35780706 CTTAGATTGGGGATGAATTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
35780732 CTTA
1 CTTA
35780736 AGTCAACACA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:35781791 original size:26 final size:26
Alignment explanation
Indices: 35781753--35781805 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35781743 GGCTCAAAAT
*
35781753 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35781779 CTTAGACAT-GGAATGAATTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35781805 C
1 C
35781806 CTAAGCCAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35783006 original size:157 final size:156
Alignment explanation
Indices: 35782518--35783078 Score: 513
Period size: 159 Copynumber: 3.6 Consensus size: 156
35782508 TAGACATGGT
*
35782518 ATGAACT-CTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAACCG-GCTGGAGA
1 ATGAACTCCT-TATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAACCGATC-GGAGA
* ** * * *
35782581 GGCAGAATGTGCAAGCTGGGGATCAGCCCAGTCCCCCCTGCGTGCTGTCGATCCTACTGCCACAA
64 GGCAGAATGCGCAAGCCAGGGATCAGCCCGGT-CCCCCTGCGTGCTGTCGATCCTGCTACCACAA
* **
35782646 GCTTTGATCTGATCCCATCTTAGACTGGGA
128 -CCTTGATCTGATCTAATCTTAGACTGGGA
* * * * * * * *
35782676 ACGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCATGCGGTCGCTGAGCCAGAT-GGAGAG
1 ATGAACTCCTTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAACC-GATCGGAGAG
* * * * * * * *
35782740 GCATAACGCACAGGCCGGGGATCAGTCCGGTCCCTCTCTGTGTGCTGTCGGTCCTGCTACCACAA
65 GCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCC-C-CTGCGTGCTGTCGATCCTGCTACCACAA
* ***
35782805 CCCTTGATCTG-GCTGGGGCTTAGACAT-GGA
128 -CCTTGATCTGATCT-AATCTTAGAC-TGGGA
* * *
35782835 ATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-GGACGTGCGGGCACTCAACCGATCGGAGAG
1 ATGAACTCCTTATGCCTAAGCCAACCCACGAAACAAG-CGTGCGGGCGCTCAACCGATCGGAGAG
* * * * * *
35782899 GCAGAATGCGCAAGCCAAGAATCGGCCCGGTCCCCCTGCGTGCTGCCAATCCTGCTACCGCAACA
65 GCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTGCGTGCTGTCGATCCTGCTACCACAAC-
*
35782964 CTCGATCTGATCTAATCTTAGACTGGGA
129 CTTGATCTGATCTAATCTTAGACTGGGA
* * * * * *** * *
35782992 ATGAACTCCTTATGCCTATGTCAACCCATGAACCGAGCGTGCGGGCGCTCAGTTGACCAGAGAGG
1 ATGAACTCCTTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAACCGATCGGAGAGG
*
35783057 CAGGATGCGCAAGCCAGGGATC
66 CAGAATGCGCAAGCCAGGGATC
35783079 GAACGGGTGG
Statistics
Matches: 318, Mismatches: 72, Indels: 27
0.76 0.17 0.06
Matches are distributed among these distances:
156 2 0.01
157 114 0.36
158 83 0.26
159 118 0.37
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (156 bp):
ATGAACTCCTTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAACCGATCGGAGAGG
CAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTGCGTGCTGTCGATCCTGCTACCACAACCT
TGATCTGATCTAATCTTAGACTGGGA
Found at i:35783715 original size:26 final size:26
Alignment explanation
Indices: 35783674--35783726 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35783664 GGCTTAACAT
35783674 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
35783700 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
35783726 C
1 C
35783727 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:35784387 original size:158 final size:156
Alignment explanation
Indices: 35783945--35784388 Score: 398
Period size: 158 Copynumber: 2.8 Consensus size: 156
35783935 CATATTGCGT
* * *
35783945 AAGCCGAGGATCGACCTG-GTCCCCCTCTACGTGCTACCGAT-CTCCCTGCCACAACCCTCGGTC
1 AAGCCGAGGATCGACC-GAGTCCCCC-CTACGTGCTGCCAATCCT-GCTGCCACAACCCTCGGTC
* *
35784008 CGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-GTATGCACA
63 CGACT-GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGCATG--CG
* *
35784072 GGCACTCAGCCGGCTGAAGAAGCAGAATGTGC
125 GGCACTCAGCCGCCTGAAGAAGCAGAATGTAC
* * * * * * * * * *
35784104 AAGTCGAGGATCGACCTAGTCGCCCCTGCGTGCTGTCAATCTTGCTGTCGCAACCCTCGATCTGG
1 AAGCCGAGGATCGACCGAGTCCCCCCTACGTGCTGCCAATCCTGCTGCCACAACCCTCGGTC-CG
* ** * * * * * * *
35784169 TCTGATCTTAGAC-TAGAATGAACTCCGTATGCATAAGACAACCCACGAAATGAGCGTGCGGGTA
65 ACTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GCATGCGGGCA
* * *
35784233 CTGAGCCAGCCT-AAGAGGCATAATGTAC
129 CTCAGCC-GCCTGAAGAAGCAGAATGTAC
* * *
35784261 AAGCC-AGGGATCGGCCCGA-TCCCCCTCTATGTGCTGCCAGTCCTGCTGCCACAACCCTCGGTC
1 AAGCCGA-GGATC-GACCGAGTCCCCC-CTACGTGCTGCCAATCCTGCTGCCACAACCCTCGGTC
* * *
35784324 CAACTGGGCTTAGACATGGAACGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCATGCGGG
63 CGACTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-GGCATGCGGG
35784389 GCTCTCGGCC
Statistics
Matches: 219, Mismatches: 55, Indels: 23
0.74 0.19 0.08
Matches are distributed among these distances:
156 1 0.00
157 80 0.37
158 109 0.50
159 29 0.13
ACGTcount: A:0.25, C:0.32, G:0.24, T:0.19
Consensus pattern (156 bp):
AAGCCGAGGATCGACCGAGTCCCCCCTACGTGCTGCCAATCCTGCTGCCACAACCCTCGGTCCGA
CTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGCATGCGGGCACT
CAGCCGCCTGAAGAAGCAGAATGTAC
Found at i:35784505 original size:315 final size:316
Alignment explanation
Indices: 35783838--35784515 Score: 780
Period size: 316 Copynumber: 2.1 Consensus size: 316
35783828 CTGCTACTGT
* * * *
35783838 AACCCTCGGTCTGATCCGATCTTAGACTAGTAATGAACTCCATATGCATAAGTCAACCCATGAAA
1 AACCCTCGGTCTGATCCGATCTTAGACT-GGAATGAACTCCGTATGCATAAGACAACCCACGAAA
* * * ** * *
35783903 CGAGCGTGTGGGCGCTGAACAGGCCGAAGAGGCATATTGCGTAAGCCGAGGATCGACCTGGTCCC
65 CGAGCGTGCGGGCACTGAACAGGCCGAAGAGGCATAATGCACAAGCCGAGGATCGACCCGATCCC
* *
35783968 CCTCTACGTGCTACCGATCTCCCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGA
130 CCTCTACGTGCTACCGATCTCCCTGCCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAACGA
* * *
35784033 ACTCCCTATGCCTAAGCCAACCCACGAAACGTATGCACAGGCACTCAGCCGGCTGAAGAAGCAGA
195 ACTCCCTATGCCTAAGCCAACCCACAAAACGCATGCACAGGCACTCAGCCGGCTAAAGAAGCAGA
** * * * * * *
35784098 ATGTGCAAGTCGAGGATCGACCTAGTCGCCCCTGCGTGCTGTCAATCTTGCTGTCGC
260 ATGCCCAAGCCGAGAATCGACCAAGTCGCCCCTACGTGCTGTCAATCCTACTGTCGC
* * * * *
35784155 AACCCTCGATCTGGTCTGATCTTAGACTAGAATGAACTCCGTATGCATAAGACAACCCACGAAAT
1 AACCCTCGGTCTGATCCGATCTTAGACTGGAATGAACTCCGTATGCATAAGACAACCCACGAAAC
* * * * *
35784220 GAGCGTGCGGGTACTGAGCCA-GCCTAAGAGGCATAATGTACAAGCC-AGGGATCGGCCCGATCC
66 GAGCGTGCGGGCACTGA-ACAGGCCGAAGAGGCATAATGCACAAGCCGA-GGATCGACCCGATCC
* * *
35784283 CCCTCTATGTGCTGCC-AGTC-CTGCTGCCACAACCCTCGGTCCAACT-GGGCTTAGACATGGAA
129 CCCTCTACGTGCTACCGA-TCTC-CCTGCCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAA
** * *
35784345 CGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCATGC-GGGGCTCTCGGCCGG-TCAAAGA
192 CGAACTCCCTATGCCTAAGCCAACCCACAAAAC--GCATGCACAGGCACTCAGCCGGCT-AAAGA
*** * *
35784408 TTTAGAATGCCCAAGCCGAGAATCGA-CAAGATC-CCCCTACGTGTTGTCGATCCTACTGTCGC
254 AGCAGAATGCCCAAGCCGAGAATCGACCAAG-TCGCCCCTACGTGCTGTCAATCCTACTGTCGC
* *
35784470 AACCCTCGGTCCGATCCGATCTTAGACTGGAATGAACTCTGTATGC
1 AACCCTCGGTCTGATCCGATCTTAGACTGGAATGAACTCCGTATGC
35784516 TTAGACTGGG
Statistics
Matches: 301, Mismatches: 52, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
315 118 0.39
316 151 0.50
317 32 0.11
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (316 bp):
AACCCTCGGTCTGATCCGATCTTAGACTGGAATGAACTCCGTATGCATAAGACAACCCACGAAAC
GAGCGTGCGGGCACTGAACAGGCCGAAGAGGCATAATGCACAAGCCGAGGATCGACCCGATCCCC
CTCTACGTGCTACCGATCTCCCTGCCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAACGAA
CTCCCTATGCCTAAGCCAACCCACAAAACGCATGCACAGGCACTCAGCCGGCTAAAGAAGCAGAA
TGCCCAAGCCGAGAATCGACCAAGTCGCCCCTACGTGCTGTCAATCCTACTGTCGC
Found at i:35784524 original size:25 final size:25
Alignment explanation
Indices: 35784490--35784540 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
35784480 CCGATCCGAT
*
35784490 CTTAGACTGGAATGAACTCTGTATG
1 CTTAGACTGGAATGAACTCCGTATG
*
35784515 CTTAGACTGGGATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
35784540 C
1 C
35784541 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:35785251 original size:26 final size:26
Alignment explanation
Indices: 35785213--35785265 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35785203 GGCTCAAAAT
35785213 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35785239 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35785265 C
1 C
35785266 CTAGCTAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35785742 original size:26 final size:26
Alignment explanation
Indices: 35785713--35785765 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35785703 CCGGTTTGAT
35785713 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
35785739 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
35785765 C
1 C
35785766 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:35786338 original size:159 final size:156
Alignment explanation
Indices: 35785883--35786326 Score: 419
Period size: 159 Copynumber: 2.8 Consensus size: 156
35785873 GCCGGTCCTG
* * *
35785883 CTACCACAACCCTCGGTTTCGGTTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAAC
1 CTACCACAACCCTCGG--TCCGATGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
35785948 CCACGAAACGAGCGTGCGGTTGGTCAACCAGCCGAAGAGGCAGAATGCGCAAGTCGAGGATCGGC
64 CCACGAAA-GGGCGTGCGGTCGCTCAACCAGTCGAAGAGGCAGAATGCACAAGTCGGGGATCGGC
* **
35786013 CCGGTCCCCCCTGCGTGCTGTCGATCCTG
128 CCGGTCCCCCCTGCGTGCTGTCAATCCCA
* **** * *
35786042 CTACCACAACCCTCGGTCTGATCCAATCTTAGAC-TAGGAATGAACTCTGTATGCCTAAGTCAAC
1 CTACCACAACCCTCGGTCCGAT-GGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAC
** * * * * * * *
35786106 CCACGAAAGGAGCGTATGGGCACTGAACC-GATCGGAGTGACATAATGCACAAGTCGGGGA-CTG
64 CCACGAAAGG-GCGTGCGGTCGCTCAACCAG-TCGAAGAGGCAGAATGCACAAGTCGGGGATC-G
** * *
35786169 GCCCAATCCCCTTCTGTGTGCTGTCAATCCCA
126 GCCCGGTCCCC-CCTGCGTGCTGTCAATCCCA
* *
35786201 CTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACC
1 CTACCACAACCCTCGGTCCGA-TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
35786266 CATGAAATGGGCGTGCGGTCGCTCAGCCAGTCGAAGAGGTAGAATGCACAAG-CTGGGGATC
65 CACGAAA-GGGCGTGCGGTCGCTCAACCAGTCGAAGAGGCAGAATGCACAAGTC-GGGGATC
35786327 AGCTTGGTCC
Statistics
Matches: 221, Mismatches: 52, Indels: 23
0.75 0.18 0.08
Matches are distributed among these distances:
157 8 0.04
158 84 0.38
159 123 0.56
160 6 0.03
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (156 bp):
CTACCACAACCCTCGGTCCGATGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ACGAAAGGGCGTGCGGTCGCTCAACCAGTCGAAGAGGCAGAATGCACAAGTCGGGGATCGGCCCG
GTCCCCCCTGCGTGCTGTCAATCCCA
Found at i:35787147 original size:26 final size:26
Alignment explanation
Indices: 35787109--35787161 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35787099 GGCTCAAAAT
*
35787109 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35787135 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35787161 C
1 C
35787162 CTAAGACAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35788640 original size:158 final size:157
Alignment explanation
Indices: 35788351--35788853 Score: 503
Period size: 158 Copynumber: 3.2 Consensus size: 157
35788341 AACTTCGTAT
* * * *
35788351 TCTTAGACATGGAATGAACTCTGTATGCTAAGCCAGCCCACGAAACGAGCGTGCGGGCTCTCAAC
1 TCTTAGACATGGAATGAACTCCGTATGCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* ** * * * * * *
35788416 CGGTCGAAGAGGCAGAATGTGCAAGCTGGGGACCGGCCCGGTCCCCCCCTACGTGCTATCAATCC
66 TGGTCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGT-CCCCCCTGCATGCTGTCGATCC
* * *
35788481 TGCTACTGTAACCCTCGGTCTGGTCTGA
130 TGCTACTATAACCCTCAGTCCGGTCTGA
* * *
35788509 TCTTAGAC-TGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAG
1 TCTTAGACATGGAATGAACTCCGTATGC-TAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * *
35788573 CTGGCCAAAGAGGCATAATGCACAAGCCGGGGATCGGCCTGGTCCCCCTCTGCATGCTGCCGGTC
65 CTGGTCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCC-CTGCATGCTGTCGATC
* *
35788638 CTGCTACCATAACCCTCAGTCCGGT-TGGG
129 CTGCTACTATAACCCTCAGTCCGGTCT-GA
* * * * * * *
35788667 GCATAGACTTGGAATGAAGTCCCTATGCCTATGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 TCTTAGACATGGAATGAACTCCGTATG-CTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * *
35788732 CTGATCGAAGAGGAAGAATGCATAAGCCGGGGATCGACCCAGTCCCCCCTGCCTGCTGTCGATCC
65 CTGGTCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATCC
* * **
35788797 TGCT-GTCACAACCCTCCA-TCCAATCTGA
130 TGCTACT-ATAACCCT-CAGTCCGGTCTGA
35788825 TCTTAGAC-TGGAAATGAACTCCGTATGCT
1 TCTTAGACATGG-AATGAACTCCGTATGCT
35788854 TAGACTGGCG
Statistics
Matches: 278, Mismatches: 58, Indels: 19
0.78 0.16 0.05
Matches are distributed among these distances:
157 29 0.10
158 159 0.57
159 89 0.32
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
TCTTAGACATGGAATGAACTCCGTATGCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
TGGTCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATCCT
GCTACTATAACCCTCAGTCCGGTCTGA
Found at i:35789580 original size:159 final size:158
Alignment explanation
Indices: 35789218--35789717 Score: 499
Period size: 159 Copynumber: 3.2 Consensus size: 158
35789208 ACTCCATATG
* * *
35789218 CTTAGACATGGAATGAACTCCGTAAGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
35789283 CAGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCTGTGTGCTGTCGATCCT
66 CAGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCTGTGTGCTGCCGATCCC
* * * *
35789348 GCTGTCGCAACCCTCGATCCGATCCGAT
131 GCTGCCACAACCCTAGATCCGATACGAT
* * * * * *
35789376 CTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGCTGAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
35789440 CCAGTCGGAGAGGCATAATGCGCAAGCCAGGGATCGA-TCGGATCCCCCTCTGTGTGTTGCCGGT
65 CCAGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCCAG-TCCCCC-CTGTGTGCTGCCGAT
* * * *
35789504 CCCGCTGCCATAACCCTAGGTCCGACTAGGGT
128 CCCGCTGCCACAACCCTAGATCCGA-TACGAT
* * * *
35789536 -TTAGACATGGAATGAACTCCCTATGGCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * ** * *
35789600 CGGTCGAAGAGGCAGAATGCGCAAGCCA-GGATTGGCCCGGTCCCCCCTGCATGCTGTCGATCCT
66 CAGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCTGTGTGCTGCCGATCCC
* * * * *
35789664 ACTGCCGCAACCCTCGGTCC-AGTCCGAT
131 GCTGCCACAACCCTAGATCCGA-TACGAT
*
35789692 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
35789718 GTTAGACTGG
Statistics
Matches: 278, Mismatches: 56, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
156 5 0.02
157 52 0.19
158 105 0.38
159 112 0.40
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CAGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCTGTGTGCTGCCGATCCC
GCTGCCACAACCCTAGATCCGATACGAT
Found at i:35789733 original size:26 final size:26
Alignment explanation
Indices: 35789693--35789743 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
35789683 CAGTCCGATC
*
35789693 TTAGACTGGGAATGAACTCTGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
35789719 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
35789744 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:35789965 original size:513 final size:506
Alignment explanation
Indices: 35788995--35789988 Score: 1087
Period size: 500 Copynumber: 1.9 Consensus size: 506
35788985 TATCGGTCTT
* * * *
35788995 GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTAGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * * *
35789060 CCACGAAATGAGCATGTGGGTGCTTAGCTGATCGGAGAGCAGAATGCGCAAGCCGGGGGTCAGCC
66 CCACGAAACGAGCATGCGGGCGCTTAGCCGATCGAAGAGCAGAATGCGCAAGCCGAGGATCAGCC
* * * * **
35789125 CGGTCCCCTCTGCGTGCTGTTGATCCTGCTGTTGGTCTTGCTAGCATAACCCTCAGTCTGGTCCG
131 CGGTCCCCCCTGCATGCTGTCGATCCTAC--TTGGTC-T-C-AGCA-AACCCTCAGTCCAGTCCG
35789190 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTAAGCCTAAGCCAAC
190 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTAAGCCTAAGCCAAC
* * *
35789255 CCACGAAACGAGTGTGCGGGTGCTCAGCCAGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGAC
255 CCACGAAACGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGACAAAATGCGCAAGCCAGGGATAGAC
* * * *
35789320 CCAGTCCCCCCTGTGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGATTG
320 CCAGTCCCCCCTGTGTGCTGTCGATCCTGCTGCCACAACCCTCGATCCGATCCGAGCTTAGAATG
* *
35789385 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGCTGAACCAGTCGGAG
385 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGACGCTCAACCAGTCGGAG
*
35789450 AGGCATAATGCGCAAGCCAGGGATCGATCGGATCCCCCTCTGTGTGTTGCCGGTCCC
450 AGGCAGAATGCGCAAGCCAGGGATCGATCGGATCCCCCTCTGTGTGTTGCCGGTCCC
* * *
35789507 GCTGCCATAACCCTAGGTCCGACTAGGGTTTAGACATGGAATGAACTCCCTATGGCTAAGCCAAC
1 GCTGCCACAACCCTAGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * **
35789572 CCACGAAACGGGCGTGCGGGCGCTTAGCCGGTCGAAGAGGCAGAATGCGCAAGCC-AGGATTGGC
66 CCACGAAACGAGCATGCGGGCGCTTAGCCGATCGAAGA-GCAGAATGCGCAAGCCGAGGATCAGC
*
35789636 CCGGTCCCCCCTGCATGCTGTCGATCCTAC-T-G-C-C-GC-AACCCTCGGTCCAGTCCGATCTT
130 CCGGTCCCCCCTGCATGCTGTCGATCCTACTTGGTCTCAGCAAACCCTCAGTCCAGTCCGATCTT
** * * * *
35789695 AGACTGGGAATGAACTCTGTATGGTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCAC
195 AGACTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCGTAAGCCTAAGCCAACCCAC
* * * * * * * *
35789759 GAAATGAGCGTGTGGGTGCTCAGCCGGCCGGAGCGACATAATGCGTAAGCCGGGGATTAG-CTC-
259 GAAACGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGACAAAATGCGCAAGCCAGGGA-TAGACCCA
** * * **
35789822 GATCCCCGTTTGTGTGCTACCGATCCCGCTGTTGGTCCTGCTGCCACAACCCTCTATCCGATTGG
323 G-TCCCC-CCTGTGTGCT---G-T----C----GATCCTGCTGCCACAACCCTCGATCCGATCCG
* *
35789887 GGCTTAGACAT-GGAATGAAC-CCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GAGCGC
374 AGCTTAGA-ATGGGAATGAACTCC-GTATGCCTAAGCCAACCCACGAAACGAGCGTACGGA-CGC
** * * **
35789949 TCAACTGGTTGGAGAGGTAGAATGCGCAAGCTGGGGATCG
436 TCAACCAGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCG
35789989 GCCCAGTCCC
Statistics
Matches: 398, Mismatches: 64, Indels: 39
0.79 0.13 0.08
Matches are distributed among these distances:
499 2 0.01
500 130 0.33
501 10 0.03
502 2 0.01
504 2 0.01
505 1 0.00
507 1 0.00
508 1 0.00
509 2 0.01
512 123 0.31
513 123 0.31
514 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (506 bp):
GCTGCCACAACCCTAGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACGAGCATGCGGGCGCTTAGCCGATCGAAGAGCAGAATGCGCAAGCCGAGGATCAGCC
CGGTCCCCCCTGCATGCTGTCGATCCTACTTGGTCTCAGCAAACCCTCAGTCCAGTCCGATCTTA
GACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTAAGCCTAAGCCAACCCACGA
AACGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGACAAAATGCGCAAGCCAGGGATAGACCCAGTC
CCCCCTGTGTGCTGTCGATCCTGCTGCCACAACCCTCGATCCGATCCGAGCTTAGAATGGGAATG
AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGACGCTCAACCAGTCGGAGAGGCAG
AATGCGCAAGCCAGGGATCGATCGGATCCCCCTCTGTGTGTTGCCGGTCCC
Found at i:35790058 original size:867 final size:864
Alignment explanation
Indices: 35788324--35790637 Score: 2798
Period size: 866 Copynumber: 2.7 Consensus size: 864
35788314 GTGGCTCAAA
* * * *
35788324 ATCTTTGACTGGAAATGAACTTCGTATTCTTAGACATGGAATGAACTCTGTATG-CTAAGCCAGC
1 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
* * * * ** * *
35788388 CCACGAAACGAGCGTGCGGGCT-CTCAACCGGTCGAAGAGGCAGAATGTGCAAGCTGGGGACCGG
66 CCACGAAACGAGCGTGCGGG-TGCTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGA
* * * * * * *
35788452 CCCGGTCCCCCCCTACGTGCTATCAATCCTGCTACTGTAACCCTCGGTCTGGTCTGATCTTAGAC
130 CCCAGT-CCCCCCTACGTGCTGTCGATCCTGCTTCTGCAACCCTCGGTCCGGTCCGATCTTAGAC
* * * *
35788517 T-GGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCTGGCCAA
194 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGC-CGCCAG
* * * ** * *
35788581 AGAGGCATAATGCACAAGCCGGGGATCGGCCTGGTCCCCCTCTGCATGCTGCCGGTCCTGCTACC
258 AGAGGCATAATGCGCAAGCCAGGGATCGACC-GGTCCCCCTCTGTGTGCTGCCGGTCCCGCTGCC
* * * * * *
35788646 ATAACCCTCA-GTCCGGTTGGGGCATAGACTTGGAATGAAGTCCCTATGCCTATGCCAACCCACG
322 ATAACCCT-AGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGGCTAAGCCAACCCACG
* * * ** * *
35788710 AAACGGGCGTGCGGGCACTCAGCTGATCGAAGAGGAAGAATGCATAAGCCGGGGATCGACCCAGT
386 AAACGGGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGGT
* * ** * *
35788775 CCCCCCTGCCTGCTGTCGATCCTGCTGTCACAACCCTCCATCCAATCTGATCTTAGACTGGAAAT
450 CCCCCCTGCATGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGAAAT
* * * * * *
35788840 GAACTCCGTATGCTTAGACTGGCGATGAATTCGGTATGTCTAAGTCAACCCATGAAACGAGCGTG
515 GAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * *
35788905 CGGGTACTGAACAGGTCAGAGAGGCATAATGCATAAGCCAAAGATCGGCTCGGTCCCCCTCTGCG
580 CGGGTACTCAACAGGCCAGAGAGACATAATGCATAAGCCAAAGATCAGCTCGATCCCCCTCTGCG
** * * *
35788970 TGCTGTCGATCCCGTTATCGGTCTTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGA
645 TGCTACCGATCCCGCTATCGGTCCTGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGA
* * * * * * *
35789035 ATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCATGTGGGTGCTTAGCTGATCGGAGAGC
710 ATGAACCTCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAACTGATCGGAGAGC
* * * * * * *
35789100 AGAATGCGCAAGCCGGGGGTCAGCCCGGTCCCCTCTGCGTGCTGTTGATCCTGCTGTTGGTCTTG
775 AGAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCCTACATGCTGTTGATCCTGCTGCTGGTCCTG
**
35789165 CTAGCATAACCCTCAGTCTGGTCCG
840 CTAGCATAACCCTCAGTCCAGTCCG
* * * *
35789190 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTAAGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
* * *
35789255 CCACGAAACGAGTGTGCGGGTGCTCAGCCAGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGAC
66 CCACGAAACGAGCGTGCGGGTGCTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGAC
** * * *
35789320 CCAGTCCCCCCTGTGTGCTGTCGATCCTGCTGTC-GCAACCCTCGATCCGATCCGATCTTAGATT
131 CCAGTCCCCCCTACGTGCTGTCGATCCTGCT-TCTGCAACCCTCGGTCCGGTCCGATCTTAGACT
* * * * * *
35789384 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGCTGAACCAGTCGGA
195 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCC-GCCAGA
* *
35789449 GAGGCATAATGCGCAAGCCAGGGATCGATCGGATCCCCCTCTGTGTGTTGCCGGTCCCGCTGCCA
259 GAGGCATAATGCGCAAGCCAGGGATCGACCGG-TCCCCCTCTGTGTGCTGCCGGTCCCGCTGCCA
* * *
35789514 TAACCCTAGGTCCGACTAGGGTTTAGACATGGAATGAACTCCCTATGGCTAAGCCAACCCACGAA
323 TAACCCTAGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGGCTAAGCCAACCCACGAA
* * * *
35789579 ACGGGCGTGCGGGCGCTTAGCCGGTCGAAGAGGCAGAATGCGCAAGCCAGGATTGGCCCGGTCCC
388 ACGGGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGGTCCC
* * *
35789644 CCCTGCATGCTGTCGATCCTACTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAA
453 CCCTGCATGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGAAATGAA
* * *
35789709 CTCTGTATGGTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGG
518 CTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * * *** * * * *
35789774 GTGCTCAGCCGGCCGGAGCGACATAATGCGTAAGCCGGGGATTAGCTCGATCCCCGTTTGTGTGC
583 GTACTCAACAGGCCAGAGAGACATAATGCATAAGCCAAAGATCAGCTCGATCCCCCTCTGCGTGC
* * * *
35789839 TACCGATCCCGCTGTTGGTCCTGCTGCCACAACCCTCTATCCGATTGGGGCTTAGACATGGAATG
648 TACCGATCCCGCTATCGGTCCTGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATG
* * * *
35789904 AACC-CTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAACTGGTTGGAGAGGTA
713 AACCTC-GTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAACTGATCGGAGA-GCA
* *
35789968 GAATGCGCAAGCTGGGGATCGGCCCAGTCCCCCCTACATGCTGTCT-ATCCTGCTGCTGGTCCTG
776 GAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCCTACATGCTGT-TGATCCTGCTGCTGGTCCTG
* *
35790032 CT-GTCATAACCTTCGGTCCAGTCCG
840 CTAG-CATAACCCTCAGTCCAGTCCG
* *
35790057 ATCTTAGACTAGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCTGCATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
* * * * * *
35790122 CCACAAAATGAGCATGCGGGTGCTCAGCCAACCGAAGAGGTAGAATGCGAAAGCCAGGGATC-AG
66 CCACGAAACGAGCGTGCGGGTGCTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGA-
* * *
35790186 CCCAGT-CCCCCTACGTGTTGTCGATCCTGCTTCTGCGACCCTCGGTTCGGTCCGATCTTAGACT
130 CCCAGTCCCCCCTACGTGCTGTCGATCCTGCTTCTGCAACCCTCGGTCCGGTCCGATCTTAGACT
* * *
35790250 GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGATCGTGCGGGCATTGAGCCGACCAGA
195 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCG-CCAGA
* *
35790315 GAGGCATAATACGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGTGTGCTGCCGGTCCCGCTGCCA
259 GAGGCATAATGCGCAAGCCAGGGATC-GACCGGTCCCCCTCTGTGTGCTGCCGGTCCCGCTGCCA
* * * * * *
35790380 CAACCCTCGATCGGGCTGGGGCTTAGACATGGAATGAACTCCTTATGGCTAAGCCAACCCATGAA
323 TAACCCTAGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGGCTAAGCCAACCCACG-A
* * * * *
35790445 AACGGGCGTGGGGGCGCTCAGTCGATC-AGAGAGGCAGAATGGCGCAAGTCGGGGATCAGCCTGG
387 AACGGGCGTGCGGGCGCTCAGCCGATCGA-AGAGGCAGAAT-GCGCAAG-CCGGGATCGGCCCGG
** * * * *
35790509 TCCCCCCTGCATGCCATCGATCCTGCTTTCGCAAACCTCGGTCCGGTCCGATCTTAGACTAGAAA
449 TCCCCCCTGCATGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGAAA
* *
35790574 TGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA-CCACGAAACGAGCGT
514 TGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
35790638 TACGGCGCTC
Statistics
Matches: 1223, Mismatches: 206, Indels: 36
0.83 0.14 0.02
Matches are distributed among these distances:
865 4 0.00
866 587 0.48
867 498 0.41
868 22 0.02
869 112 0.09
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (864 bp):
ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGTGCTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGAC
CCAGTCCCCCCTACGTGCTGTCGATCCTGCTTCTGCAACCCTCGGTCCGGTCCGATCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCGCCAGAGA
GGCATAATGCGCAAGCCAGGGATCGACCGGTCCCCCTCTGTGTGCTGCCGGTCCCGCTGCCATAA
CCCTAGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGGCTAAGCCAACCCACGAAACG
GGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGGTCCCCCC
TGCATGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGAAATGAACTC
TGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTA
CTCAACAGGCCAGAGAGACATAATGCATAAGCCAAAGATCAGCTCGATCCCCCTCTGCGTGCTAC
CGATCCCGCTATCGGTCCTGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAAC
CTCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAACTGATCGGAGAGCAGAATG
CGCAAGCCGGGGATCAGCCCAGTCCCCCCTACATGCTGTTGATCCTGCTGCTGGTCCTGCTAGCA
TAACCCTCAGTCCAGTCCG
Found at i:35790111 original size:26 final size:26
Alignment explanation
Indices: 35790059--35790111 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
35790049 CCAGTCCGAT
*
35790059 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGCATG
35790085 CTTAGAC-ATGGAATGAAC-TCTGCATG
1 CTTAGACTA-GGAATGAACTTC-GCATG
35790111 C
1 C
35790112 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGCATG
Found at i:35790611 original size:26 final size:26
Alignment explanation
Indices: 35790561--35790613 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35790551 CCGGTCCGAT
**
35790561 CTTAGACTAGAAATGAACTTTGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
* *
35790587 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
35790613 C
1 C
35790614 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCGTATG
Found at i:35791477 original size:26 final size:26
Alignment explanation
Indices: 35791441--35791493 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35791431 TCAGTCGAAT
*
35791441 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35791467 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35791493 C
1 C
35791494 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35792169 original size:159 final size:158
Alignment explanation
Indices: 35791821--35792323 Score: 460
Period size: 158 Copynumber: 3.2 Consensus size: 158
35791811 AACTCCGTAT
* * * * **
35791821 GCTTAGATATGGAATGAACTCCAC-ATGCCTAAGCCAACCCATGAAATGAGGGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCC-CTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGTGCTCA
**** * * * ** * *
35791885 GCCGGTTGGAGAGGCAGAATGTGCAAATCGGGGATCAACCCGAGCCCCCCTACGTGCTGTCGATC
65 GCCGACCAGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATC
** *
35791950 CTGCTACCACAACCCTCGGTCCAGTTCGA
130 CAACTACCACAACCCTCGGTCCAGCTCGA
* * * * *
35791979 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCAGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGTGCTCA
* * ** *
35792043 GCCGACCAGAGAGGCATAATGCGTAAGTCGAGGATCGGCCCGATCCCCCTCTGTGTGCTGCCGGT
65 GCCGACCAGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCGATCCCCC-CTACGTGCTGCCGAT
* * * *
35792108 CCAACTGCCACAACCCTCGGTCCGGCTGGG
129 CCAACTACCACAACCCTCGGTCCAGCTCGA
*
35792138 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGTGCTCAG
* * * * * * *
35792203 TC-AGCCAGAGAGGCAGAATGCGTAAG-CAGGGGATCGGTCCGATCCCCCCTGCATGTTACGGAT
66 CCGA-CCAGAGAGGCAGAATGCGTAAGTC-GGGGATCGGCCCGATCCCCCCTACGTGCTGCCGAT
* * * * *
35792266 CCTACTACCGCAACCCTCAGTCC-GGTCCAA
129 CCAACTACCACAACCCTCGGTCCAGCT-CGA
* *
35792296 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCCTATGC
35792324 TTAGATTGGG
Statistics
Matches: 278, Mismatches: 59, Indels: 16
0.79 0.17 0.05
Matches are distributed among these distances:
157 4 0.01
158 142 0.51
159 131 0.47
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGTGCTCAG
CCGACCAGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCC
AACTACCACAACCCTCGGTCCAGCTCGA
Found at i:35792326 original size:26 final size:26
Alignment explanation
Indices: 35792297--35792349 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35792287 CCGGTCCAAT
35792297 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
35792323 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
35792349 C
1 C
35792350 CTAAGTCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35793067 original size:26 final size:26
Alignment explanation
Indices: 35793029--35793081 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35793019 GGCTTAAAAT
35793029 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35793055 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35793081 C
1 C
35793082 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35793570 original size:26 final size:26
Alignment explanation
Indices: 35793529--35793581 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35793519 CCAGTTCGAT
35793529 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35793555 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
35793581 C
1 C
35793582 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35794236 original size:159 final size:157
Alignment explanation
Indices: 35793935--35795092 Score: 575
Period size: 159 Copynumber: 7.2 Consensus size: 157
35793925 ACCCTGTATG
* * * *
35793935 CTTAGATATGGAATGAACCCCGTATGCCTAAGCCAACCCAAGAAATGAGCGTGCGGGCACTTAGT
1 CTTAGAT-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGT
* **
35794000 CGACCAGAGAGGCAGAATGCACAAGTCGGGGATCAGGCC-GATCCCTCCTTGCGTGCTATCGATC
65 CGACCGGAGAGGCAGAATGCACAAGTCGGGGATC-GGCCTGATCCCTCC-TGCGTGCTGCCGATC
*
35794064 CTACTGTCGCAACCCCCGATCCGGTCTGAT
128 CTACTGTCGCAACCCTCGATCCGGTCTGAT
* * * * * *
35794094 CTTAGATTGGGAATGAACTCCATATACCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
1 CTTAGATT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGT
* * * * * * *
35794159 CAACCGGAGAGGCATAATGCACAAGTCGGGGATCGACCTGATCCCACTCTGCATGTTGCCAATCC
65 CGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCTGATCCCTC-CTGCGTGCTGCCGATCC
** * * * **
35794224 CGCTGCCACAACCCTCGGTCCGGT-TGGGG
129 TACTGTCGCAACCCTCGATCCGGTCT-GAT
* * *
35794253 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACATGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGA-TTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGT
* * ** * **
35794318 CGATCGGAGTGGCAGAATGCGTAAGCCAAGGATCGGCCTGATCCCTCCTGCGTGCTGCCGATCCT
65 CGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCTGATCCCTCCTGCGTGCTGCCGATCCT
* * *
35794383 ATTGTTGCAACCCTCGATCCAGTCTGAT
130 ACTGTCGCAACCCTCGATCCGGTCTGAT
* * * * ** * ** *
35794411 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGAGTATGGGCGCACAGC
1 CTTAGA-TTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA--
* * * * * * *
35794476 CGGTCAGAGAGGTGACCGGAGAGGCATAATGCGCAAGTTGGGGATCAGCCTGGTCCCCCTCTGCA
63 --GTC--------GACCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCTGATCCCTC-CTGCG
* * * * **
35794541 TACTGCCAATCCTGTTATCGGTCCTGCTACCACAACCCTCGGTCCGG-CTGGGG
117 TGCTGCCGATCC---TA------CTG-T--CGCAACCCTCGATCCGGTCT-GAT
* * * * * * **
35794594 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGT---GGCACTCAAC
1 CTTAGA-TTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGT
** ** * * *
35794656 CGGTCGGAGAGGCAGAATGCGTAAG-CTGGGGATCGGCCTGATCCCTAACTGTGTGCTGTCGATC
65 CGACCGGAGAGGCAGAATGCACAAGTC-GGGGATCGGCCTGATCCCT-CCTGCGTGCTGCCGATC
* * * * * * * *
35794720 CTGCTGCCACGACCCTGGGTCCGATCCGAT
128 CTACTGTCGCAACCCTCGATCCGGTCTGAT
* * * * * * * * *
35794750 CCTAGACTAGGAAT-AACTCCATATGCATAAGTCAACCCATGAAACGAGCGTACGGGTGCTGAG-
1 CTTAGA-TTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGT
* * * * * * * * *
35794813 CTGATCGAAGAGGCATAATGCACAAGCCAGGGATCAG-CTCGGTCGCCCTCCT-CGTGCTGTCGG
65 C-GACCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCT-GAT--CCCTCCTGCGTGCTGCCGA
* **
35794876 TCC--C-GTCGTGACAACCCTCGGTCCGG-CTGGGG
126 TCCTACTGTC--G-CAACCCTCGATCCGGTCT-GAT
* * * * * * *
35794908 CTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGGGCGTGCAGGTGCTCAGT
1 CTTAGA-TTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGT
** * * * ** * *
35794973 CGACCGGAGAGGCAGAATGTGCAAGTCGGGGATCGACCCGATCACC-CCTGTGTGCTATCAATCT
65 CGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCTGATC-CCTCCTGCGTGCTGCCGATCC
* * * * * *
35795037 TGCTGCCGTAATCCTCGGTCTGGTCTGAT
129 TACTGTCGCAACCCTCGATCCGGTCTGAT
* *
35795066 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGA-TTGGAATGAACTCCGTATGC
35795093 TTAGACTAGG
Statistics
Matches: 750, Mismatches: 193, Indels: 113
0.71 0.18 0.11
Matches are distributed among these distances:
155 34 0.05
156 27 0.04
157 9 0.01
158 207 0.28
159 291 0.39
160 9 0.01
161 2 0.00
162 3 0.00
165 1 0.00
168 48 0.06
170 35 0.05
171 14 0.02
174 2 0.00
176 1 0.00
180 8 0.01
181 1 0.00
182 2 0.00
183 56 0.07
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGATTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGTC
GACCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCTGATCCCTCCTGCGTGCTGCCGATCCTA
CTGTCGCAACCCTCGATCCGGTCTGAT
Found at i:35795107 original size:26 final size:26
Alignment explanation
Indices: 35795066--35795118 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35795056 CTGGTCTGAT
35795066 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35795092 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
35795118 C
1 C
35795119 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35795772 original size:26 final size:26
Alignment explanation
Indices: 35795736--35795788 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35795726 CCAGTCTGAT
*
35795736 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
35795762 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35795788 C
1 C
35795789 CTAAATCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35796037 original size:367 final size:355
Alignment explanation
Indices: 35795222--35796066 Score: 864
Period size: 367 Copynumber: 2.4 Consensus size: 355
35795212 GGTCCCGCTG
* * * * * *
35795222 GGGCTTAGACATGGAATGAACTC-CCTATCCCTAAGCCAA-CCACGAAACGGGCGTGCGAGCGCT
1 GGGCTTAGACATGGAATGAACTCTGC-ATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACT
* * * * * * * **
35795285 CAACCGGTCGGAGAGGTAGAATACGCAAGTC-GAGGATCGGC-CGATCCCCCT-TGCGTGCTACC
65 CAACCGGCCAGAAAGGCAGAATACACAAGCCAGA-GATC-GCTCGATCCCCCTCTACGTGCTGTC
** * *
35795347 GATCCTGCTACCGCAAGGCTCGATCCGGTCCGATCTTAGACAGGGAATGAACTCTGTATGCTTAG
128 GATCCTGCTACCGCAACCCTCGATCCAGTCCGATCTTAGACAGGGAATGAACTCCGTATGCTTAG
* * * *
35795412 ACTGGGGATGAACTCCGTAGGCCTAAGTCAACCCACGAAAAGAGCATACGGGTGCTCGTCTAGCT
193 ACTGGGGATGAACTCCGTAGGCCTAAATCAACCCACGAAAAGAGCATACGGGTGCTCGCCAAGCC
* * * * * *
35795477 GGAGAGGTATAATGCGCAAGCCGGGGATTAGTCTGATCCCCCTCTGCATGCTACCGATCCCACTG
258 GGAGAGGCATAATACACAAACCAGGGATTAGTCTGATCCCCCTCTGCATGCTACCGATCCCACTA
* *
35795542 CCGGTCCAGCTGCCATAACCCTCAGTTTAGCTA
323 CCGGTCCAGCTACCACAACCCTCAGTTTAGCTA
* * *
35795575 GGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTC
1 GGGCTTAGACATGGAATGAACTCTGCATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTC
* * * * *
35795640 AACCGGCCGGAGAGGTAGAATTCACAAGCCAGAGATCGAC-CTGGTCCCCC-CTACGTGCTGTCG
66 AACCGGCCAGAAAGGCAGAATACACAAGCCAGAGATCG-CTC-GATCCCCCTCTACGTGCTGTCG
* * * * *
35795703 ATCCTGCTACCGCAACCCTTGGTCCAGTCTGATCTTATACTGGGAATGAACTCCGTATGCTTAGA
129 ATCCTGCTACCGCAACCCTCGATCCAGTCCGATCTTAGACAGGGAATGAACTCCGTATGCTTAGA
* * * *
35795768 CTGGGGATGAACTCTGTATGCCTAAATCAACCCACGAAACGAGCTTACGGGTGCTCAACCAGCCA
194 CTGGGGATGAACTCCGTAGGCCTAAATCAACCCACGAAAAGAGCATACGGGTGCT----C-GCC-
* *
35795833 GAAAGGCCGACTGAGAGGCATAATACACAAACCAGGGATCT-G-CTCGGTCCCCCTCTGCGTGCT
253 --AA-GCCG---GAGAGGCATAATACACAAACCAGGGAT-TAGTCT-GATCCCCCTCTGCATGCT
** * * * *
35795896 GTCGATCCCATTACCGGTCCTA-CTACCACAGCCCTCGGTTTGGCTA
310 ACCGATCCCACTACCGGTCC-AGCTACCACAACCCTCAGTTTAGCTA
* * *
35795942 GGGCTTAGACATGGAATGAACTCTGCATGGCTAAGCTAACCCACGAAACGAGCGTACGGGCACTG
1 GGGCTTAGACATGGAATGAACTCTGCATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTC
** * * *
35796007 AGTCGGCCAGAAAGGCATAATACGCAAGCCAGGGATCGCTCGATCCCCCTCTACGTGCTG
66 AACCGGCCAGAAAGGCAGAATACACAAGCCAGAGATCGCTCGATCCCCCTCTACGTGCTG
35796067 CTGGTCCCAC
Statistics
Matches: 405, Mismatches: 64, Indels: 32
0.81 0.13 0.06
Matches are distributed among these distances:
353 36 0.09
354 53 0.13
355 124 0.31
359 1 0.00
360 2 0.00
363 1 0.00
364 3 0.01
366 10 0.02
367 173 0.43
368 2 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (355 bp):
GGGCTTAGACATGGAATGAACTCTGCATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTC
AACCGGCCAGAAAGGCAGAATACACAAGCCAGAGATCGCTCGATCCCCCTCTACGTGCTGTCGAT
CCTGCTACCGCAACCCTCGATCCAGTCCGATCTTAGACAGGGAATGAACTCCGTATGCTTAGACT
GGGGATGAACTCCGTAGGCCTAAATCAACCCACGAAAAGAGCATACGGGTGCTCGCCAAGCCGGA
GAGGCATAATACACAAACCAGGGATTAGTCTGATCCCCCTCTGCATGCTACCGATCCCACTACCG
GTCCAGCTACCACAACCCTCAGTTTAGCTA
Found at i:35796302 original size:26 final size:26
Alignment explanation
Indices: 35796261--35796313 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35796251 CCGGTTTGAC
*
35796261 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35796287 CTTAGACTCGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
35796313 C
1 C
35796314 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35797394 original size:121 final size:121
Alignment explanation
Indices: 35797180--35797400 Score: 295
Period size: 121 Copynumber: 1.8 Consensus size: 121
35797170 TACACTAGGA
* * * *
35797180 ATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTACGGGTGTTGAACCGACCGAAGAGG
1 ATGAACTCCCTATGCATAAGCCAACCCACAAAATGAGCGTACGGGTGCTCAACCGACCGAAGAGG
* *
35797245 AATAATGCGCAAGCTGGGGATCAGCCCGATCCCCCTCTGCGTGCGGTCGGTCCCGT
66 AAGAATGCACAAGCTGGGGATCAGCCCGATCCCCCTCTGCGTGCGGTCGGTCCCGT
* * * *
35797301 ATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGTGCTCAGCCGACC-AGAGAG
1 ATGAACTCCCTATGCATAAGCCAACCCACAAAATGAGCGTACGGGTGCTCAACCGACCGA-AGAG
*
35797365 GTAGAATGCACAAG-TCGGGGATC-GACCCGATCCCCC
65 GAAGAATGCACAAGCT-GGGGATCAG-CCCGATCCCCC
35797401 ATACGTGCTA
Statistics
Matches: 86, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
120 3 0.03
121 83 0.97
ACGTcount: A:0.26, C:0.30, G:0.28, T:0.16
Consensus pattern (121 bp):
ATGAACTCCCTATGCATAAGCCAACCCACAAAATGAGCGTACGGGTGCTCAACCGACCGAAGAGG
AAGAATGCACAAGCTGGGGATCAGCCCGATCCCCCTCTGCGTGCGGTCGGTCCCGT
Found at i:35797523 original size:279 final size:279
Alignment explanation
Indices: 35797022--35797537 Score: 683
Period size: 279 Copynumber: 1.8 Consensus size: 279
35797012 TAGACATGGA
* *
35797022 ATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCACTCAGCCAACCGGAGAGG
1 ATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCAACCAGAGAGG
* * * ** * ** * *
35797087 CAGAATGCGCAAGCCGGAGATTGACCCGGTCCCCTTTGCGTGCTGTCGATCCTGCTGCCGCAACC
66 CAGAATGCACAAGCCGGAGATCGACCCGATCCCCCATACGTGCTACCGATCCTACTACCGCAACC
* *
35797152 CTCACTCCGGTTCGATCTTACACTAGGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAG
131 CTCACTCCGATTCGATCTTACACTAGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAG
*
35797217 CGTACGGGTGTTGAACCGACCGAAGAGGAATAATGCGCAAGCTGGGGATCAGCCCGATCCCCCTC
196 CGTACGGGCGTTGAACCGACCGAAGAGGAATAATGCGCAAGCTGGGGATCAGCCCGATCCCCCTC
35797282 TGCGTGCGGTCGGTCCCGT
261 TGCGTGCGGTCGGTCCCGT
* * * ** *
35797301 ATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGTGCTCAGCCGACCAGAGAGG
1 ATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCAACCAGAGAGG
* * * *
35797366 TAGAATGCACAAGTCGGGGATCGACCCGATCCCCCATACGTGCTACCGATCCTACTACCGTAACC
66 CAGAATGCACAAGCCGGAGATCGACCCGATCCCCCATACGTGCTACCGATCCTACTACCGCAACC
** * * * *
35797431 CTCGGTTCGA-TCTGATCTTACACTAGGAATGAGCTCCGTATGCATAAGTCAACCCATAGAACGA
131 CTCACTCCGATTC-GATCTTACACTAGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGA
*** * * *
35797495 GCGTACGGGCGTTGAGTGGGCTGAAGAGGCATAATGCGCAAGC
195 GCGTACGGGCGTTGAACCGACCGAAGAGGAATAATGCGCAAGC
35797538 CAAGGATCGA
Statistics
Matches: 199, Mismatches: 37, Indels: 2
0.84 0.16 0.01
Matches are distributed among these distances:
278 2 0.01
279 197 0.99
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.18
Consensus pattern (279 bp):
ATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCAACCAGAGAGG
CAGAATGCACAAGCCGGAGATCGACCCGATCCCCCATACGTGCTACCGATCCTACTACCGCAACC
CTCACTCCGATTCGATCTTACACTAGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAG
CGTACGGGCGTTGAACCGACCGAAGAGGAATAATGCGCAAGCTGGGGATCAGCCCGATCCCCCTC
TGCGTGCGGTCGGTCCCGT
Done.