Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 396 of 402
Found at i:35798158 original size:26 final size:26
Alignment explanation
Indices: 35798129--35798182 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
35798119 TCCGGTCTGA
* *
35798129 GCTTAGACTGGGAATGAAGTCCGTAT
1 GCTTAGACTGGGAATAAACTCCGTAT
*
35798155 GCTTAGATTGGGAATAAACTCCGTAT
1 GCTTAGACTGGGAATAAACTCCGTAT
35798181 GC
1 GC
35798183 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
GCTTAGACTGGGAATAAACTCCGTAT
Found at i:35798345 original size:368 final size:366
Alignment explanation
Indices: 35797584--35798879 Score: 1261
Period size: 368 Copynumber: 3.6 Consensus size: 366
35797574 TCCCATTGCA
* *
35797584 ACAACCCTCGGTCTAGCTGGGCTTAGACATGGAATGAA-TCCCTATGCCTAAGCCAACCCATGAA
1 ACAACCCTCGGTCTAGCTGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * * ** *** *
35797648 ACGGGCGTGCGGGCGCTCAGCCGGCCAGAGAGGTAGAATACGCAAGCTGGGGATCTTTCTGGTCC
66 ACGAGCGTGCGGGCGCTCAGCCGGCGA-AGAGGCAGAATGCGCAAGCTAAGGATCGGCCCGGTCC
*** * * * * *
35797713 CCCCTACATGCTGTCGATCTTGCTATCGTAACCCTCAGTCCGGTCTGATCTTAGATTAGGAATGA
130 CCCCTGTGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGA
* * ** * *
35797778 ACTCCGTATGCTTAGACTGCGG-ACAAACTTTGTATGCCTAAGTCAACCCATGAAGCGAGCGTAC
195 ACTCCGTATGCTTAGAATG-GGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC
* ** * * ** *
35797842 AGGCGCTCAACCGACCGGAGAGGACGACTGGAGAGGCATAATGTGCAAGTTGGGGATCTGCCCGA
259 GGGCGCTCAGTCGGCCGGAGAGGCCGACTGGAGAGGCATAATGTGCAAGCCGGGGATCAGCCCGA
* * *
35797907 TCCCTCTTTACGTGCTGTCGATCCCACTGCCGGTCCTGCTGCC
324 TCCCCCTTTACGTGCTGTCGATCCCACTGCCGGTCATGCTACC
* * * * * *
35797950 ACAGCCCTCGGTCTGGTTGGGGCTTAGATATTGAATGAACTCCGTATGCCTAAGCCAACCCACAA
1 ACAACCCTCGGTCTAGCT-GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
* * * *
35798015 AACGAGCGTGCGGGCACTGAGCCGGTCGAAGAGGCATAATGCGCAAGCTAAGGATCGGCCCAGTC
65 AACGAGCGTGCGGGCGCTCAGCCGG-CGAAGAGGCAGAATGCGCAAGCTAAGGATCGGCCCGGTC
* * * *
35798080 CCCACTGTGTGCTGTCGATCCTACTACCGCAACCCTCAATCCGGTCTGAGCTTAGACTGGGAATG
129 CCCCCTGTGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATG
* * * * * *
35798145 AAGTCCGTATGCTTAGATTGGGAATAAACTCCGTATGCCTAAGTCAATCGATGAAACGGGCATGC
194 AACTCCGTATGCTTAGAATGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC
* ** ** *
35798210 GGGTGCTCAGTCGGCCGGAGAGGCCGGTTGGAGAGGCATAATGTGCAAGCCGGGGATCAGGTCGG
259 GGGCGCTCAGTCGGCCGGAGAGGCCGACTGGAGAGGCATAATGTGCAAGCCGGGGATCAGCCCGA
* ** *
35798275 TCCCCCTTTACGTGTTG-CTGATCCTGCTGTCGGTCATGCTACC
324 TCCCCCTTTACGTGCTGTC-GATCCCACTGCCGGTCATGCTACC
* * *
35798318 ACAACCCTCGATCCAGCTGGTGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGA
1 ACAACCCTCGGTCTAGCTGG-GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
* * * * *
35798383 AACGAGCGTGCGGGCGTTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGGTC
65 AACGAGCGTGCGGGCGCTCAGCCG-GCGAAGAGGCAGAATGCGCAAGCTAAGGATCGGCCCGGT-
** * * **
35798448 CCCCCCTGTGTGCTACCGATCCTGCTACTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAAT
128 CCCCCCTGTGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAAT
* * *
35798513 GAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGT
193 GAACTCCGTATGCTTAGA-ATGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT
* * * *
35798577 GCGGGCACTCAGTCGGTCGGAGA-G--G-C-----A-G---AATGCGCAAGCCGGGGATCGGCCC
257 GCGGGCGCTCAGTCGGCCGGAGAGGCCGACTGGAGAGGCATAATGTGCAAGCCGGGGATCAGCCC
** * * *
35798629 GATCCCTCCCTTT--GTGCTGTCGATCCTGCTGCTGGTCCTGCTACT
322 GAT-CC-CCCTTTACGTGCTGTCGATCCCACTGCCGGTCATGCTACC
* * * * ** *
35798674 GCAACCCTTGGTCTGGTCCGATCTTAGAC-TGGGAATAAACTCCGTATGCCTAAGCCAACCCACG
1 ACAACCCTCGGTCTAG-CTGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * * ** * * *
35798738 AAATGAGCATACGAGCATTCAGCCGATCGAAGAGGCAGAATGCGCAAG-TCGAGG-TCGACCCGG
64 AAACGAGCGTGCGGGCGCTCAGCCG-GCGAAGAGGCAGAATGCGCAAGCT-AAGGATCGGCCCGG
* * * * *
35798801 TCCCCCCTGCGTGCTATCGATCCTGCTATCGCAACCCTCGGTTCGGTCCT-ATCTTAGACTGGGA
127 TCCCCCCTGTGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGT-CTGATCTTAGACTGGGA
35798865 ATGAACTCCGTATGC
191 ATGAACTCCGTATGC
35798880 CTAAGTCAAC
Statistics
Matches: 770, Mismatches: 144, Indels: 44
0.80 0.15 0.05
Matches are distributed among these distances:
354 70 0.09
355 11 0.01
356 139 0.18
357 5 0.01
358 6 0.01
359 1 0.00
360 1 0.00
366 16 0.02
367 23 0.03
368 367 0.48
369 130 0.17
370 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (366 bp):
ACAACCCTCGGTCTAGCTGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
ACGAGCGTGCGGGCGCTCAGCCGGCGAAGAGGCAGAATGCGCAAGCTAAGGATCGGCCCGGTCCC
CCCTGTGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAA
CTCCGTATGCTTAGAATGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGG
GCGCTCAGTCGGCCGGAGAGGCCGACTGGAGAGGCATAATGTGCAAGCCGGGGATCAGCCCGATC
CCCCTTTACGTGCTGTCGATCCCACTGCCGGTCATGCTACC
Found at i:35798528 original size:26 final size:26
Alignment explanation
Indices: 35798499--35798551 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35798489 CCGGTCCAAT
35798499 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
35798525 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
35798551 C
1 C
35798552 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:35799203 original size:26 final size:26
Alignment explanation
Indices: 35799167--35799219 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35799157 TCGGTCTGAT
* *
35799167 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
35799193 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
35799219 C
1 C
35799220 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:35799646 original size:159 final size:159
Alignment explanation
Indices: 35799356--35799646 Score: 388
Period size: 159 Copynumber: 1.8 Consensus size: 159
35799346 CCTGCTGCCA
* * * *
35799356 CAACCCTTGGTCCGATTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAACCAATCCATGAA
1 CAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAA
* * * * *
35799421 ACAAGCGTGCAGGCGCTGAGCCAGTCGGAGAGGCATAATGCGTAAGCCGGGGATCGGCCCGATCC
66 ACAAGCGTGCAGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCC
35799486 CCTTCTGCATGTTGCCGGTCCCGCTACCT
131 CCTTCTGCATGTTGCCGGTCCCGCTACCT
* * *
35799515 CAACCCTCGGTCC-ACTTGGGGCTTAGACATGGAATGCACTCCCTCTGCCTAAGCCAACCCACGA
1 CAACCCTCGGTCCGA-TTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGA
* * * * * *
35799579 AACAGGCGTGCGGGCGCTCAGCC-GACCAGAGAGGCAGAATGTGTAAGTCAGGGATCGGCTCGGT
65 AACAAGCGTGCAGGCGCTCAGCCAG-CCAGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGAT
35799643 CCCC
129 CCCC
35799647 CCTGCGTGCT
Statistics
Matches: 112, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
158 2 0.02
159 110 0.98
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
CAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAA
ACAAGCGTGCAGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCC
CCTTCTGCATGTTGCCGGTCCCGCTACCT
Found at i:35799723 original size:26 final size:26
Alignment explanation
Indices: 35799694--35799746 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35799684 CCAGTCTGAT
*
35799694 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
35799720 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
35799746 C
1 C
35799747 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:35800747 original size:158 final size:157
Alignment explanation
Indices: 35800445--35800890 Score: 355
Period size: 158 Copynumber: 2.8 Consensus size: 157
35800435 GCTTAGACAT
* ** *
35800445 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCAACCGAAG
* * * * **
35800510 AGGCAGAATGTGTAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCACA
66 AGGCAGAATGGGCAAGCCAGGGATCGACCCGATCCCCACTACGTGCTGTCGATCCCACTGCCACA
*
35800575 ACCCTCAGTCCGGTCTAATCTTACACTG
131 AACCTCA-TCCGGTCTAATCTTACACTG
* *
35800603 GGAATGAACTCCGTAT-CCATAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGCCAACCGAA
1 GGAATGAACTCCGTATGCC-TAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCAACCGAA
* * * *
35800667 GAAGGCA-AATGCGGCAAGTCGGGGATCGCACCCGATCCCCAACTGCGCTGCTGTCGGTCCCACT
65 G-AGGCAGAATG-GGCAAGCCAGGGATCG-ACCCGATCCCC-ACTACG-TGCTGTCGATCCCACT
* **
35800731 GCCA-ATAACCCTCGGTCCGG-CTAGGGCGTTA-ACAT-
125 GCCACA-AA-CCTC-ATCCGGTCTA-ATC-TTACAC-TG
* * * * * * *** *
35800766 GGAATGAACTCCCTATTGCCTAAGGCCAACCCACGAAACGGGCGTGCGAGCGTTCAACTGGCCGG
1 GGAATGAACTCCGTA-TGCCTAA-GCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCAACCGA
* * * * * * *
35800831 AGAGGTAGAAGGCTGGCAGGCCAGGGATCGACCCGGGTCCCCTCTGCCTGCTGTCGATCC
64 AGAGGCAGAATG--GGCAAGCCAGGGATCGACCC-GATCCCCACTACGTGCTGTCGATCC
35800891 TGCTGTTTCG
Statistics
Matches: 228, Mismatches: 42, Indels: 30
0.76 0.14 0.10
Matches are distributed among these distances:
157 2 0.01
158 60 0.26
159 17 0.07
160 10 0.04
161 5 0.02
162 21 0.09
163 26 0.11
164 23 0.10
165 45 0.20
166 19 0.08
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.16
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCAACCGAAG
AGGCAGAATGGGCAAGCCAGGGATCGACCCGATCCCCACTACGTGCTGTCGATCCCACTGCCACA
AACCTCATCCGGTCTAATCTTACACTG
Found at i:35802355 original size:159 final size:159
Alignment explanation
Indices: 35802149--35802701 Score: 612
Period size: 159 Copynumber: 3.5 Consensus size: 159
35802139 CCCACTGCTG
* ** * * * *
35802149 TCCTGCTGCCACAACCCTCGGTCTAGCTGGGGCTTAGACATGAAATGAACTCCGTATGCCAAAGC
1 TCCTGCTACCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* *
35802214 CAACCCATGAAATGAGCGTGCGGGCGTTGAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGAT
66 CAACCCATGAAATGAGCGTCCGGGCGCTGAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGAT
*
35802279 CGGCCCGATCCCCCTCTACGTGCTGTCGA
131 CGGCCCGATCCCCCTCTGCGTGCTGTCGA
*
35802308 TCCTGCTACCACAACCCTCGATCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
1 TCCTGCTACCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
** * * * * * *
35802373 CAACCCACAAAATGGGCGTCCGGGTGCTCAGCCGACTTG-AGAGACAGAATGCGCAAGCCGGGGA
66 CAACCCATGAAATGAGCGTCCGGGCGCTGAGCCGA-TCGAAGAGGCATAATGCGCAAGCCGGGGA
*** *
35802437 TCAATCCGAT--CTCTCGTGCGTGCTGTCGA
130 TCGGCCCGATCCCCCTC-TGCGTGCTGTCGA
*** ***** * *
35802466 TCCTGCTATTGCAACCCTCGGTCCGGTCCTATCTTAGAC-TGCGAATGAACTCCGTATGCCTACG
1 TCCTGCTACCACAACCCTCGGTCCGGTTGGGGCTTAGACATG-GAATGAACTCCCTATGCCTAAG
* * * * * * * *
35802530 TCAACCCATGAAACGAGCGTTCGGGCACTGAGCAGGTC-AGAGAGGCATAAAGAGCAAGCCGGGG
65 CCAACCCATGAAATGAGCGTCCGGGCGCTGAGCCGATCGA-AGAGGCATAATGCGCAAGCCGGGG
* *
35802594 ATCGGCCCGATCCCCCTCTGCATGCTGTCGG
129 ATCGGCCCGATCCCCCTCTGCGTGCTGTCGA
** * *
35802625 TCCCACTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
1 TCCTGCTACCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
35802690 CAACCCATGAAA
66 CAACCCATGAAA
35802702 CGGGCATGCG
Statistics
Matches: 315, Mismatches: 71, Indels: 16
0.78 0.18 0.04
Matches are distributed among these distances:
157 7 0.02
158 115 0.37
159 185 0.59
160 8 0.03
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
TCCTGCTACCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
CAACCCATGAAATGAGCGTCCGGGCGCTGAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGAT
CGGCCCGATCCCCCTCTGCGTGCTGTCGA
Found at i:35802746 original size:159 final size:159
Alignment explanation
Indices: 35802149--35802786 Score: 577
Period size: 159 Copynumber: 4.0 Consensus size: 159
35802139 CCCACTGCTG
* * * * * *
35802149 TCCTGCTGCCACAACCCTCGGT-CTAGCTGGGGCTTAGACATGAAATGAACTCCGTATGCCAAAG
1 TCCTGCTACCACAACCCTCGGTCCGA-TTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * * * * *
35802213 CCAACCCATGAAATGAGCGTGCGGGCGTTGAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGA
65 CCAACCCATGAAACGAGCGTGCGGGTGATCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGA
*
35802278 TCGGCCCGATCCCCCTCTACGTGCTGTCGA
130 TCGGCCCGATCCCCCTCTGCGTGCTGTCGA
* *
35802308 TCCTGCTACCACAACCCTCGATCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
1 TCCTGCTACCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
** * * * * ** *
35802373 CAACCCACAAAATGGGCGTCCGGGTGCTCAGCCGACTTGAGAGACAGAATGCGCAAGCCGGGGAT
66 CAACCCATGAAACGAGCGTGCGGGTGATCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGAT
*** *
35802438 CAATCCGAT--CTCTCGTGCGTGCTGTCGA
131 CGGCCCGATCCCCCTC-TGCGTGCTGTCGA
*** * ***** * *
35802466 TCCTGCTATTGCAACCCTCGGTCCGGTCCTATCTTAGAC-TGCGAATGAACTCCGTATGCCTACG
1 TCCTGCTACCACAACCCTCGGTCCGATTGGGGCTTAGACATG-GAATGAACTCCCTATGCCTAAG
* * * * * ** * * * *
35802530 TCAACCCATGAAACGAGCGTTCGGG-CACTGAGCAGGTCAGAGAGGCATAAAGAGCAAGCCGGGG
65 CCAACCCATGAAACGAGCGTGCGGGTGA-TCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGG
* *
35802594 ATCGGCCCGATCCCCCTCTGCATGCTGTCGG
129 ATCGGCCCGATCCCCCTCTGCGTGCTGTCGA
** *
35802625 TCCCACTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
1 TCCTGCTACCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * * * *
35802690 CAACCCATGAAACGGGCATGCGGGTGATCAGCTGGCCGGAGAGTCAGAATGCGCAAGTCAGGGAT
66 CAACCCATGAAACGAGCGTGCGGGTGATCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGAT
* * * * **
35802755 CAGCTCGGTCCCCC-ATGCGTGCTACCGA
131 CGGCCCGATCCCCCTCTGCGTGCTGTCGA
35802783 TCCT
1 TCCT
35802787 ACTATCGCCA
Statistics
Matches: 372, Mismatches: 99, Indels: 17
0.76 0.20 0.03
Matches are distributed among these distances:
157 6 0.02
158 127 0.34
159 231 0.62
160 8 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
TCCTGCTACCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
CAACCCATGAAACGAGCGTGCGGGTGATCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGAT
CGGCCCGATCCCCCTCTGCGTGCTGTCGA
Found at i:35802776 original size:317 final size:317
Alignment explanation
Indices: 35802192--35802841 Score: 820
Period size: 317 Copynumber: 2.1 Consensus size: 317
35802182 TTAGACATGA
* ** *
35802192 AATGAACTCCGTATGCCAAAGCCAACCCATGAAATGAGCGTGCGGGCGTTGAGCCGATCGAAGAG
1 AATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAGCAGATCGAAGAG
* * * **
35802257 GCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTGTCGATCCTGCTACCACAA
66 GCATAAAGAGCAAGCCGGGGATCGGCCCGATCCCCCTCTACATGCTGTCGATCCCACTACCACAA
* *
35802322 CCCTCGATCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATG
131 CCCTCGATCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACG
* * ** * * *
35802387 GGCGTCCGGGTGCTCAGCCGACTTGAGAGACAGAATGCGCAAGCCGGGGATCAATCCGATCTCTC
196 GGCATCCGGGTGATCAGCCGACCGGAGAGACAGAATGCGCAAGCCAGGGATCAATCCGATCCCCC
* ** * * ** *
35802452 GTGCGTGCTGTCGATCCTGCTATTGCAACCCTCGGTCCGGTCCTATCTTAGACT-GCG
261 ATGCGTGCTACCGATCCTACTATCGCAACCCTCGGTCCAATCCGATCTTAGACTAG-G
* * * * *
35802509 AATGAACTCCGTATGCCTACGTCAACCCATGAAACGAGCGTTCGGGCACTGAGCAGGTC-AGAGA
1 AATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAGCAGATCGA-AGA
* * *
35802573 GGCATAAAGAGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCATGCTGTCGGTCCCACTGCCACA
65 GGCATAAAGAGCAAGCCGGGGATCGGCCCGATCCCCCTCTACATGCTGTCGATCCCACTACCACA
* **
35802638 ACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC
130 ACCCTCGATCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC
* * * * * * *
35802703 GGGCATGCGGGTGATCAGCTGGCCGGAGAGTCAGAATGCGCAAGTCAGGGATC-AGCTCGGTCCC
195 GGGCATCCGGGTGATCAGCCGACCGGAGAGACAGAATGCGCAAGCCAGGGATCAATC-CGATCCC
* * *
35802767 CCATGCGTGCTACCGATCCTACTATCGCCAGCCTCGGTCCAATCCGATCTTAGATTAGG
259 CCATGCGTGCTACCGATCCTACTATCGCAACCCTCGGTCCAATCCGATCTTAGACTAGG
*
35802826 AATGAACTTCGTATGC
1 AATGAACTCCGTATGC
35802842 TTAGACTGGG
Statistics
Matches: 282, Mismatches: 48, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
316 3 0.01
317 278 0.99
318 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (317 bp):
AATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAGCAGATCGAAGAG
GCATAAAGAGCAAGCCGGGGATCGGCCCGATCCCCCTCTACATGCTGTCGATCCCACTACCACAA
CCCTCGATCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACG
GGCATCCGGGTGATCAGCCGACCGGAGAGACAGAATGCGCAAGCCAGGGATCAATCCGATCCCCC
ATGCGTGCTACCGATCCTACTATCGCAACCCTCGGTCCAATCCGATCTTAGACTAGG
Found at i:35802853 original size:26 final size:26
Alignment explanation
Indices: 35802815--35802867 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35802805 CCAATCCGAT
*
35802815 CTTAGATTAGGAATGAACTT-CGTATG
1 CTTAGACTAGGAATGAA-TTCCGTATG
*
35802841 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTAGGAATGAATTCCGTATG
35802867 C
1 C
35802868 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAATTCCGTATG
Found at i:35803346 original size:26 final size:26
Alignment explanation
Indices: 35803317--35803369 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35803307 CCGGTCTGAT
* *
35803317 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35803343 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
35803369 C
1 C
35803370 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35804428 original size:26 final size:26
Alignment explanation
Indices: 35804390--35804442 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35804380 GGCTCAAAAT
35804390 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35804416 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35804442 C
1 C
35804443 CTAAACCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35804919 original size:26 final size:26
Alignment explanation
Indices: 35804890--35804942 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35804880 CCAGTTCGAT
35804890 CTTAGACTAGGAATCAACTCCATATG
1 CTTAGACTAGGAATCAACTCCATATG
* * * *
35804916 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCATATG
35804942 C
1 C
35804943 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCATATG
Found at i:35805296 original size:26 final size:26
Alignment explanation
Indices: 35805258--35805310 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35805248 CCGGTCTGAT
35805258 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35805284 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
35805310 C
1 C
35805311 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35805408 original size:184 final size:190
Alignment explanation
Indices: 35805099--35805574 Score: 561
Period size: 196 Copynumber: 2.5 Consensus size: 190
35805089 TTTGACTGGG
* ** * * * *
35805099 GCTTAGACATGGAACGAACTCCGTATGTGTAAGCCAACCCACGAAAAGAGCGTGCGCCGCTCAGT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGGGGCGCTCAGC
* *
35805164 CGGCCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCCTTACGTGCTGTCGAT-C
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTTACGTGCTGTCGATCC
* ** **
35805228 -CTGCT-ATC-G-C-AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATAT
131 GCTGCTGATCTGTCGAACCCTCGATCCAATCCAATCTTAGACTGGGAATGAACTCCATAT
* * *
35805283 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-GGGCGCTCAG
* * * ** * *
35805348 CCAGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGTTCGGTCCCCCC-TGCGTGCTGTCGATC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTTACGTGCTGTCGATC
* * *
35805412 CTGCTGCTGGTCTTGTTGTCGTAACCCTCGATCCAATCCAATCTTAGATTGGGAATGAACTCCGT
130 C-GCTGCTGATC----TGTCG-AACCCTCGATCCAATCCAATCTTAGACTGGGAATGAACTCCAT
35805477 AT
189 AT
*
35805479 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT-GGGGCGCTCAG
**
35805544 CCGGCCAAAGAGGCAGAATGCGCAAGCCGGG
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGG
35805575 TGTCATGAGC
Statistics
Matches: 242, Mismatches: 36, Indels: 16
0.82 0.12 0.05
Matches are distributed among these distances:
184 61 0.25
185 48 0.20
187 5 0.02
188 2 0.01
193 1 0.00
194 1 0.00
196 124 0.51
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (190 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGGGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTTACGTGCTGTCGATCC
GCTGCTGATCTGTCGAACCCTCGATCCAATCCAATCTTAGACTGGGAATGAACTCCATAT
Found at i:35811663 original size:26 final size:25
Alignment explanation
Indices: 35811634--35811684 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
35811624 CGATCTGATT
35811634 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTC-GTATGC
*
35811660 TTAGACTGGGGATGAACTCGTATGC
1 TTAGACTGGGAATGAACTCGTATGC
35811685 CTAAATTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (25 bp):
TTAGACTGGGAATGAACTCGTATGC
Found at i:35812884 original size:26 final size:26
Alignment explanation
Indices: 35812855--35812907 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35812845 TCCGATTGAT
35812855 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
35812881 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35812907 C
1 C
35812908 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35813919 original size:26 final size:26
Alignment explanation
Indices: 35813868--35813920 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
35813858 TCGGTTCGAT
*
35813868 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
35813894 CTTAGACAT-GGAATTAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
35813920 C
1 C
35813921 CTAAACCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35814215 original size:196 final size:195
Alignment explanation
Indices: 35813866--35814222 Score: 513
Period size: 196 Copynumber: 1.8 Consensus size: 195
35813856 GTTCGGTTCG
* * *
35813866 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATTAACTCTATATGCCTAAACCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATACTTAGACATGGAATGAACTCCATATGCCTAAACCAAC
* * * * *
35813931 CGATGAAATGAGCGTACGGGCGCTCAGCCGATCGAAGAGGCAGAATACGTAAGCAGAGGATCAGC
66 CGACGAAACGAGCGTACGGGCGCTCAACCGATCGAAGAGGCAGAATACGCAAGCAGAGGATCAAC
35813996 CCAGTCCCCCCTATGTTCTGTCGATCCTGCTACTGGTCTTGCTGCCGCAACCTTCGATTTGGTCT
131 CCAGT-CCCCCTATGTTCTGTCGATCCTGCTACTGGTCTTGCTGCCGCAACCTTCGATTTGGTCT
35814061 A
195 A
* * *
35814062 ATCTTAGATTGGGAATGAACTCCGTATACTTAGACATGGAATGAACTCCGTATGCCTAACCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATACTTAGACATGGAATGAACTCCATATGCCTAAACCAAC
* * *
35814127 CGACGAAACGAGCGTACGGGCGCTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCAG-GGATCAA
66 CGACGAAACGAGCGTACGGGCGCTCAACCGATCGAAGAGGCAGAATACGCAAG-CAGAGGATCAA
*
35814191 CCC-GAT-CCCCTTTGTATGCTGTCGATCCTGCT
130 CCCAG-TCCCCCTATGT-T-CTGTCGATCCTGCT
35814223 GCCACAACCC
Statistics
Matches: 142, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
194 8 0.06
195 2 0.01
196 129 0.91
197 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (195 bp):
ATCTTAGACTGGGAATGAACTCCGTATACTTAGACATGGAATGAACTCCATATGCCTAAACCAAC
CGACGAAACGAGCGTACGGGCGCTCAACCGATCGAAGAGGCAGAATACGCAAGCAGAGGATCAAC
CCAGTCCCCCTATGTTCTGTCGATCCTGCTACTGGTCTTGCTGCCGCAACCTTCGATTTGGTCTA
Found at i:35814445 original size:159 final size:158
Alignment explanation
Indices: 35814090--35814802 Score: 649
Period size: 159 Copynumber: 4.6 Consensus size: 158
35814080 ACTCCGTATA
* * *
35814090 CTTAGACATGGAATGAACTCCGTATGCCTAACCCAACCGACGAAACGAGCGTACGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
** * * * * * ** *
35814155 CGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAACCCGATCCCCTTTGT-ATGCTGTCGATCC
66 CGACCGGAGAGGCATAATGCGCAAGCGAGAGATCAGCCCGATCCCCCTCCTCGTGCT-TCGATCC
* *
35814219 TGCTGCCACAACCCTCGGTCCGACTAGGG
130 TGCTGCCACAACCCTCGATCCGACTGGGG
** ** * *
35814248 CTTAGACATGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGTGGGTGCTGAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * **
35814313 TGGCCGGAGAGGCATAATGCACAAACGAGAGATTGGCCCGATCCCCCTCCTCGTGCTATCGAT-C
66 CGACCGGAGAGGCATAATGCGCAAGCGAGAGATCAGCCCGATCCCCCTCCTCGTGCT-TCGATCC
* *
35814377 TCGTTGCCACAACCCTCGATCCGGCTGGGG
130 T-GCTGCCACAACCCTCGATCCGACTGGGG
* * * * *
35814407 CTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACGAAATG-GACGTGCGGGTGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTACGGGCGCTCAG
** * * * *
35814471 TTGACCGGAGAGGCAAAATGTC-CAAGTC-AGGGATCGGCCCGGT--CCC-CC-C-TG---CG--
65 CCGACCGGAGAGGCATAATG-CGCAAG-CGAGAGATCAGCCCGATCCCCCTCCTCGTGCTTCGAT
*
35814524 --TGCTGCCACAACCCTC-AGTTCGACTGGGG
128 CCTGCTGCCACAACCCTCGA-TCCGACTGGGG
* * * *
35814553 CTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCGGTGAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * *
35814618 CGATCGGAGAGGCATAATGCGCAAGCTG-GAGATCAGCCCGATCCCCCT-CTGCGTGCTGCCAGT
66 CGACCGGAGAGGCATAATGCGCAAGC-GAGAGATCAGCCCGATCCCCCTCCT-CGTGCTTCGA-T
* *
35814681 CCTGCTGCCACAACCCTCGGTTC-AGCTGGGG
128 CCTGCTGCCACAACCCTCGATCCGA-CTGGGG
* * * * * *
35814712 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGAGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * *
35814777 CAACTGGAGAGGCAGAATGCGCAAGC
66 CGACCGGAGAGGCATAATGCGCAAGC
35814803 CGGGGATCGG
Statistics
Matches: 452, Mismatches: 77, Indels: 51
0.78 0.13 0.09
Matches are distributed among these distances:
145 3 0.01
146 107 0.24
147 2 0.00
148 4 0.01
150 3 0.01
151 2 0.00
154 3 0.01
155 1 0.00
156 2 0.00
157 3 0.01
158 98 0.22
159 222 0.49
160 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGACCGGAGAGGCATAATGCGCAAGCGAGAGATCAGCCCGATCCCCCTCCTCGTGCTTCGATCCT
GCTGCCACAACCCTCGATCCGACTGGGG
Found at i:35814659 original size:305 final size:305
Alignment explanation
Indices: 35814090--35814832 Score: 814
Period size: 305 Copynumber: 2.4 Consensus size: 305
35814080 ACTCCGTATA
* * * * * * *
35814090 CTTAGACATGGAATGAACTCCGTATGCCTAACCCAACCGACGAAA-CGAGCGTACGGGCGCTCAA
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGA-CGTGCGGGAGCTCAG
*** * ** *
35814154 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAACCCGATCCCCTTTGTATGCTGTCGATCC
65 CCAACCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCACGATCCCC-----A--CTG-CG----
* **
35814219 TGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGTTAA
118 TGCTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
** * * * **
35814284 CCCACGAAACGAGCGTGTGGGTGCTGAGCTGGCCGGAGAGGCATAATGCACAAACGAGAGATTGG
183 CCCACGAAACGAGCGTACGGGCGCTGAGCCGACCGGAGAGGCATAATGCACAAACGAGAGATCAG
** * *
35814349 CCCGATCCCCCTCCT-CGTGCTATC-GAT-CTCGTTGCCACAACCCTCGATCCGGCTGGGG
248 CCCGATCCCCCT-CTGCGTGCTGCCAG-TCCT-GCTGCCACAACCCTCGATCCAGCTGGGG
* * *
35814407 CTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACGAAATGGACGTGCGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGACGTGCGGGAGCTCAGC
** * * * *
35814472 TGACCGGAGAGGCAAAATGTC-CAAGTCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCACAAC
66 CAACCGGAGAGGCAAAATG-CGCAAGCCAGGGATCGGCACGATCCCCACTGCGTGCTGCCACAAC
* * *
35814536 CCTCAGTTCGACTGGGGCTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCACGAAACGA
130 CCTCAGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
* * * * *
35814601 GTGTACGGGCGGTGAGCCGATCGGAGAGGCATAATGCGCAAGCTG-GAGATCAGCCCGATCCCCC
195 GCGTACGGGCGCTGAGCCGACCGGAGAGGCATAATGCACAAAC-GAGAGATCAGCCCGATCCCCC
* *
35814665 TCTGCGTGCTGCCAGTCCTGCTGCCACAACCCTCGGTTCAGCTGGGG
259 TCTGCGTGCTGCCAGTCCTGCTGCCACAACCCTCGATCCAGCTGGGG
* *
35814712 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGAGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGACGTGCGGGAGCTCAGC
* * *
35814777 CAACTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCACGATCCCCACTGCGTGCT
66 CAACCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCACGATCCCCACTGCGTGCT
35814833 ACCGATCCTA
Statistics
Matches: 363, Mismatches: 56, Indels: 26
0.82 0.13 0.06
Matches are distributed among these distances:
304 3 0.01
305 259 0.71
306 4 0.01
309 2 0.01
310 3 0.01
317 89 0.25
318 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (305 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGACGTGCGGGAGCTCAGC
CAACCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCACGATCCCCACTGCGTGCTGCCACAACC
CTCAGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG
CGTACGGGCGCTGAGCCGACCGGAGAGGCATAATGCACAAACGAGAGATCAGCCCGATCCCCCTC
TGCGTGCTGCCAGTCCTGCTGCCACAACCCTCGATCCAGCTGGGG
Found at i:35814906 original size:26 final size:26
Alignment explanation
Indices: 35814870--35814922 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35814860 CCAGTCTGAT
*
35814870 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35814896 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35814922 C
1 C
35814923 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35816120 original size:26 final size:26
Alignment explanation
Indices: 35816091--35816142 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
35816081 CCAGTCCGAT
*
35816091 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
35816117 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35816143 TCGAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35816509 original size:26 final size:26
Alignment explanation
Indices: 35816458--35816510 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35816448 GTGATCCAAT
*
35816458 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35816484 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
35816510 C
1 C
35816511 CTAAGAAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35816692 original size:26 final size:26
Alignment explanation
Indices: 35816654--35816706 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35816644 CTAGTCTGAT
*
35816654 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
35816680 CTTAGACAT-GGAATGAACCCCGTATG
1 CTTAGAC-TGGGAATGAACCCCGTATG
35816706 C
1 C
35816707 CTAAGCCAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:35817948 original size:159 final size:158
Alignment explanation
Indices: 35817552--35817988 Score: 358
Period size: 159 Copynumber: 2.8 Consensus size: 158
35817542 CTTAGACATA
* * * * * * * * * ***
35817552 GAATGAACTCCGTATGCCTAAGCCAATCCACGAAACAATCGTACAGGCACTCAGTAAGCC-AGAG
1 GAATGAACTCCCTATGCCTAACCCAACCCATGAAACGAGCATACGGGCGCTCAGCCGGCCGA-AG
** * * ** *** * *
35817616 AGGCAGAATACATAAGCTGGGGATCGGTTCGATCCCCCCTGCATGCTGTCGATCCTGCTGCCGCA
65 AGGCAGAATACGCAAGCCGGAGATCGGCCCGATCCCCCCTATGTGCTGTCGATCCTGCTACCACA
* * *
35817681 ACCCTTGGTCCGATCTGATCTTAGATTGG
130 ACCCTCGGTCCGAGCTGAGCTTAGATTGG
* ** * * * * * *
35817710 GAATGAACTCCGTATGCCTAAGTCAACTCATGAAATGAGCATACGGGCGTTGAGCCGGTCGGAGA
1 GAATGAACTCCCTATGCCTAACCCAACCCATGAAACGAGCATACGGGCGCTCAGCCGGCCGAAGA
** * * *
35817775 GGCCTAATGCGCAAGTCGGAGATCGGCCCGATCCCCCTCTATGTGCTGTCGGTCCTGCTACCACA
66 GGCAGAATACGCAAGCCGGAGATCGGCCCGATCCCCC-CTATGTGCTGTCGATCCTGCTACCACA
*
35817840 ACCCTCGGTCC-AGCTGGGGCTTAGATAT-G
130 ACCCTCGGTCCGAGCT-GAGCTTAGAT-TGG
* ** *
35817869 GATTGAACTCCCTATGCCTAACCCAACCCATGAAACGAGCATGTGGGCGCTCAGTCGGCCGAAGA
1 GAATGAACTCCCTATGCCTAACCCAACCCATGAAACGAGCATACGGGCGCTCAGCCGGCCGAAGA
* * * * * *
35817934 GGTAGAATACGCAAGCCGGGGATCGGCCTGGTCCCCCCTGTGTGCTTTCGATCCT
66 GGCAGAATACGCAAGCCGGAGATCGGCCCGATCCCCCCTATGTGCTGTCGATCCT
35817989 ACTGTCGTGA
Statistics
Matches: 214, Mismatches: 61, Indels: 8
0.76 0.22 0.03
Matches are distributed among these distances:
158 92 0.43
159 121 0.57
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
GAATGAACTCCCTATGCCTAACCCAACCCATGAAACGAGCATACGGGCGCTCAGCCGGCCGAAGA
GGCAGAATACGCAAGCCGGAGATCGGCCCGATCCCCCCTATGTGCTGTCGATCCTGCTACCACAA
CCCTCGGTCCGAGCTGAGCTTAGATTGG
Found at i:35818046 original size:26 final size:26
Alignment explanation
Indices: 35818017--35818072 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
35818007 CTGGTTCGAT
*
35818017 CTTAGACTGGGAATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
35818043 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
35818069 CTTA
1 CTTA
35818073 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:35818126 original size:13 final size:13
Alignment explanation
Indices: 35818108--35818132 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35818098 GGCGCTCAAC
35818108 CGACCGGAGAGGT
1 CGACCGGAGAGGT
35818121 CGACCGGAGAGG
1 CGACCGGAGAGG
35818133 CATAATAGGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.48, T:0.04
Consensus pattern (13 bp):
CGACCGGAGAGGT
Found at i:35818869 original size:26 final size:26
Alignment explanation
Indices: 35818840--35818892 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35818830 CTGGTCCGAT
*
35818840 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCATATG
35818866 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCATATG
35818892 C
1 C
35818893 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCATATG
Found at i:35819247 original size:26 final size:26
Alignment explanation
Indices: 35819206--35819258 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35819196 CCGGTCCGAT
35819206 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
35819232 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
35819258 C
1 C
35819259 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:35819967 original size:26 final size:26
Alignment explanation
Indices: 35819929--35819981 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35819919 GGCTCAAAAT
35819929 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35819955 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
35819981 C
1 C
35819982 CCAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35820309 original size:159 final size:158
Alignment explanation
Indices: 35819954--35820385 Score: 410
Period size: 159 Copynumber: 2.7 Consensus size: 158
35819944 AACTCCATAT
* *
35819954 GCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
*** * * * * *
35820019 CTGGCTGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCGGTCCCCCCTACATGCTGTCGATCC
66 CCAACCGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTACATGCTGCCGATCC
*
35820084 TACCGCCACAACCCTCAGTCTGGTATGA
131 CACCGCCACAACCCTCAGTCTGGTATGA
* * * * * *
35820112 TCTTACAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCA
* *
35820176 GCCAACCGAAGAGGCATAATGCGCAAGCCGGGGATC-AGCCCGAT-CCCCCTATGCGA-GCTGCC
65 GCCAACCGAAGAGGCAGAATGCACAAGCCGGGGATCGA-CCCGATCCCCCCTA--C-ATGCTGCC
* * * *
35820238 GATCCCGCTGCCACAACCCTCTGTCT-G-ACTGGG
126 GATCCCACCGCCACAACCCTCAGTCTGGTA-T-GA
* * * * *
35820271 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-CAGACGTACGAGCGCTTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAG-CGTACGGGCGCTCA
*** * * * * * *
35820335 GCTGGCTGAAGAGGCAGAATGTACAAGCTGGGGATCGGCTCGGTCCCCCCT
65 GCCAACCGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCT
35820386 GCGTGCTACC
Statistics
Matches: 219, Mismatches: 44, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
157 10 0.05
158 91 0.42
159 110 0.50
160 8 0.04
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
CCAACCGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTACATGCTGCCGATCC
CACCGCCACAACCCTCAGTCTGGTATGA
Found at i:35820829 original size:159 final size:158
Alignment explanation
Indices: 35820537--35820842 Score: 348
Period size: 159 Copynumber: 1.9 Consensus size: 158
35820527 AGTACTGCGT
* *
35820537 CACAACCCTCGGTCCCGCTGGGGCCTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATG
1 CACAACCCTCGGTCCCGCTAGGGCCTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
** * * ** * *
35820602 AAACGAGCGTGCGGGTGTTGAGCCGACCGGAGAGGCATAATACGCAAGCTGGGGATCGGCCCGGT
66 AAACGAGCGTGCGGGTGTTGAGCCGACCAAAGAAGCAGAATACGCAAGCCAGGGATCGGACCGAT
35820667 CCCCCTCTGCGTGCTGTCAGTCCCGCTAC
131 -CCCCTCTGCGTGCTGTCAGTCCCGCTAC
* * * *
35820696 CACAACCCTCGGTTCGGCTAGGG-CTATACATGGAATGAACTCCCTCTGCCTAAAGCCAACCCAT
1 CACAACCCTCGGTCCCGCTAGGGCCTAGACATGGAATGAACTCCCTATGCCT-AAGCCAACCCAT
* * * * ** * * *
35820760 GAAATGGGTGTGTGGGGTGCTT-AGTTGGCCAAAGAAGCAGAATGCGCAAGCCAGGGATC-GACT
65 GAAACGAGCGTG-CGGGTG-TTGAGCCGACCAAAGAAGCAGAATACGCAAGCCAGGGATCGGACC
35820823 GATCCCCTCTGCGTGCTGTC
128 GATCCCCTCTGCGTGCTGTC
35820843 GATCCTACTG
Statistics
Matches: 121, Mismatches: 23, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
158 42 0.35
159 45 0.37
160 32 0.26
161 2 0.02
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (158 bp):
CACAACCCTCGGTCCCGCTAGGGCCTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
AAACGAGCGTGCGGGTGTTGAGCCGACCAAAGAAGCAGAATACGCAAGCCAGGGATCGGACCGAT
CCCCTCTGCGTGCTGTCAGTCCCGCTAC
Found at i:35820911 original size:25 final size:26
Alignment explanation
Indices: 35820877--35820928 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
35820867 CTGATTCAAT
35820877 CTTAGACTGGGAATGAACTCC-TATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35820902 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35820928 C
1 C
35820929 CTAGTCAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35823276 original size:26 final size:26
Alignment explanation
Indices: 35823238--35823290 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35823228 GGCTCAAAAT
*
35823238 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35823264 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35823290 C
1 C
35823291 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35823772 original size:26 final size:26
Alignment explanation
Indices: 35823743--35823793 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
35823733 GATCCGATCA
* *
35823743 TAGACTGGGAATTAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
35823769 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
35823794 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:35824143 original size:26 final size:26
Alignment explanation
Indices: 35824107--35824159 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35824097 CCAATCCGAT
*
35824107 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
35824133 CTTAGACTGGGGTTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35824159 C
1 C
35824160 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35824162 original size:184 final size:184
Alignment explanation
Indices: 35823948--35824397 Score: 539
Period size: 184 Copynumber: 2.4 Consensus size: 184
35823938 GTCCAGCTGG
* *
35823948 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTACTCA
1 GCTTAGAC-TGAGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTACTCA
** * * **
35824012 G-TCGGTTGGAGAGGCAGAATGCAAAAGCC-AGGGACCAGCCCGGTTCCC-CCTACGTGCTGTCG
65 GCT-GGCCGGAGAGGCAGAATGCAAAAGCCGA-AGACCAGCCC-GATCCCTCCTACGTGCTACCG
**
35824074 ATCCTGCTGCCACAACCCTCGGACCAATCCGATCTTAGACTGGGAATGAACTCTGTAT
127 ATCCTGCTGCCACAACCCTCGGACCAATCCGATCTTAGACTGGGAATGAACTCCATAT
* * * * *
35824132 GCTTAGACTGGGGTTGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGTGCTGAG
1 GCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTACTCAG
** * * * *
35824197 CTGGCCGGAGAGGCAGAATGCGTAAGTCGAAGATCGGCTCGATCCCTCCTACGTGCTACCGATCC
66 CTGGCCGGAGAGGCAGAATGCAAAAGCCGAAGACCAGCCCGATCCCTCCTACGTGCTACCGATCC
* * * **
35824262 TGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATAT
131 TGCTGCCACAACCCTCGGACCAATCCGATCTTAGACTGGGAATGAACTCCATAT
* * * **
35824316 GCTTAGACTGAGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTACTCAG
* *
35824381 CTGACCAGAGAGGCAGA
66 CTGGCCGGAGAGGCAGA
35824398 TACGCAAGTC
Statistics
Matches: 227, Mismatches: 35, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
183 7 0.03
184 218 0.96
185 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.20
Consensus pattern (184 bp):
GCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTACTCAG
CTGGCCGGAGAGGCAGAATGCAAAAGCCGAAGACCAGCCCGATCCCTCCTACGTGCTACCGATCC
TGCTGCCACAACCCTCGGACCAATCCGATCTTAGACTGGGAATGAACTCCATAT
Found at i:35826441 original size:26 final size:26
Alignment explanation
Indices: 35826412--35826464 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
35826402 CTAGTCTGAT
* *
35826412 CTTAGACTCAGAATGAAC-TCTGTATG
1 CTTACACTAAGAATGAACTTC-GTATG
*
35826438 CTTACACTAAGGATGAACTTCGTATG
1 CTTACACTAAGAATGAACTTCGTATG
35826464 C
1 C
35826465 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTACACTAAGAATGAACTTCGTATG
Found at i:35827104 original size:364 final size:363
Alignment explanation
Indices: 35826253--35827246 Score: 1128
Period size: 364 Copynumber: 2.7 Consensus size: 363
35826243 AACTTCGTAT
* * *
35826253 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
* * * * * * *
35826318 CCGGCCGAAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGGTCCCCCCTGTGTACTGTCGATCC
66 CCGGCAG-AGAGGTAGAATGCACAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCAATCC
* * * * *
35826383 TGCTATCGCAACCCTCGG-TCTAGTCTGATCTTAGACTCA-GAATGAACTCTGTATGCTTACACT
130 TGCTACCGTAACCCTCGGTTCGA-TCTGATCTTAGACT-AGGAATGAATTCTGTATGCTTAGACT
* * * *
35826446 AAGGATGAACTTCGTATGCCTAAGTCAACTCACGAAACGAGCGTGCAGGCGCTCAGCCGATCGGA
193 AAGGATGAACTCCGTATGCCTAAGTCAAC-CACGAAACGAGCGTGCGGGCGCTCAACCGATCAGA
* *** ** *
35826511 GAGGCTGGTCGAAGAAACATAATGTGCAAGCTGGGGATCAGCCCGATCCCCCTATGTGTGCTACC
257 GAGGCTGATCGAAGAAACATAATACACAAGCTAAGGATCAGCCCGATCCCCC--T-TCTGCTACC
*
35826576 GATCTCACTGTCGGTCCTGCTACCACAACCCTACGTCCAGCTGGG
319 GATCCCACTGTCGGTCCTGCTACCACAACCCTACGTCCAGCTGGG
*
35826621 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
* * * *** * * *
35826686 CTGGCTGGAGATGTAGAATGTGTAAGTCGAGGA-CCAGCCTGGTCCCCCCTGCGTGCTGCCAATC
66 CCGGC-AGAGAGGTAGAATGCACAAGTCGGGGATCGA-CCCGGTCCCCCCTGCGTGCTGCCAATC
* *
35826750 CTGCTACCGTAACCCTCGGTTCGATCTGATCTTCGACTGGGAATGAATTCTGTATGCTTAGACTA
129 CTGCTACCGTAACCCTCGGTTCGATCTGATCTTAGACTAGGAATGAATTCTGTATGCTTAGACTA
* * * *
35826815 TGGATGAACTCCGTATGCCTAAGTCAAGCCACAAAACGAGCGTACGGGCACTCAACC-AGTCAGA
194 AGGATGAACTCCGTATGCCTAAGTCAA-CCACGAAACGAGCGTGCGGGCGCTCAACCGA-TCAGA
** * * *
35826879 GAGG-TCGATCGAAGAGGCATAATACATAAG-TCAAGGATCAGCCCGGTCCCCC-TCTGCTGCCG
257 GAGGCT-GATCGAAGAAACATAATACACAAGCT-AAGGATCAGCCCGATCCCCCTTCTGCTACCG
*
35826941 ATCCCACTGTCGGTCTTGCTACCACAACCCT-CGGTCCAGCTGGG
320 ATCCCACTGTCGGTCCTGCTACCACAACCCTAC-GTCCAGCTGGG
* * * * *
35826985 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCATGAAACGAGTGTGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
* * * *
35827050 CCGGTCAGAGAGGTAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCGTGTTGGCAATCC
66 CCGG-CAGAGAGGTAGAATGCACAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCAATCC
* * * * *
35827115 TAG-TGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTTC-ATATGCTTAGATT
130 T-GCTACCGTAACCCTCGGTTCGATCTGATCTTAGACTAGGAATGAA-TTCTGTATGCTTAGACT
** * * * *
35827178 GGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTC-AGCGACCAGA
193 AAGGATGAACTCCGTATGCCTAAGTCAA-CCACGAAACGAGCGTGCGGGCGCTCAACCGATCAGA
35827242 GAGGC
257 GAGGC
35827247 AGGATGTGCA
Statistics
Matches: 527, Mismatches: 84, Indels: 34
0.82 0.13 0.05
Matches are distributed among these distances:
363 11 0.02
364 251 0.48
365 7 0.01
367 4 0.01
368 249 0.47
369 5 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (363 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
CCGGCAGAGAGGTAGAATGCACAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCAATCCT
GCTACCGTAACCCTCGGTTCGATCTGATCTTAGACTAGGAATGAATTCTGTATGCTTAGACTAAG
GATGAACTCCGTATGCCTAAGTCAACCACGAAACGAGCGTGCGGGCGCTCAACCGATCAGAGAGG
CTGATCGAAGAAACATAATACACAAGCTAAGGATCAGCCCGATCCCCCTTCTGCTACCGATCCCA
CTGTCGGTCCTGCTACCACAACCCTACGTCCAGCTGGG
Found at i:35827588 original size:26 final size:26
Alignment explanation
Indices: 35827550--35827602 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
35827540 GGCTCAAAAT
* *
35827550 CTTAGACTGGGAATGAATTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
*
35827576 CTTAGACAT-GGAAAGAACTCCGTATG
1 CTTAGAC-TGGGAAAGAACTCCATATG
35827602 C
1 C
35827603 CTAAGCCAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:35828103 original size:26 final size:26
Alignment explanation
Indices: 35828052--35828104 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35828042 CCAGTCCGAT
*
35828052 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35828078 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
35828104 C
1 C
35828105 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35828380 original size:355 final size:343
Alignment explanation
Indices: 35827735--35828548 Score: 802
Period size: 355 Copynumber: 2.3 Consensus size: 343
35827725 CCGATCTGAT
* *
35827735 CTTAGAC-TGAGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACATG-GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * ** *
35827799 CCGATCGAAAAGGCATAATGCGCAAGCCAGGGATTGGCCCAGTCCCCCTCTGCGTGTTGTCGGTC
65 CCGATCGGAGAGGCAAAATGCACAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGTTGTCGGTC
*
35827864 CCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCA
130 CCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAACCA
* * * * * * ** * *
35827929 ACCCATGAAATGGGTGTGCGGGGGCTCAGTCAGCCGGAGAGGCAGAATGCGCGAGCAAGGAATCA
195 ACCCACGAAATGAGCGTACAGGCGCTCAACCAGCCGGAGAGGCAGAATGCACAAGCAAGGAATCA
* * * *
35827994 ACTCGGTCCCCCCTGCGTGCAGCATATCCTGCT-ACCGCAACCCTCAGTCCAGTCCGATCTTAGA
260 ACTCAGTCCCCCCTGCATGCAGCAGATCCTGCTGA-CGCAACCCTCAATCCAGTCCGATCTTAGA
** *
35828058 CTGGGAATGAACTCTATATG
324 CTACGAATGAACTCCATATG
* *
35828078 CTTAGAC-TAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
*
35828142 TCGATCGGAGAGGCAAAATGCACAAGTCGGGGATCAGCCCGGTCCCCCTTTGCATGCTGTCGATC
65 CCGATCGGAGAGGCAAAATGCACAAGTCGGGGATCAGCCCGGTCCCCC--T-C-TGC-GT-G-T-
* * *
35828207 CTGCTGCTGGTCCTGCTGCCACAACCCTC-GATCCGGCTGGGGCTTAGACATGGAATAAACTCCG
122 -TG-T-C-GGTCCCGCTGCCACAACCCTCAG-TCCGACTGGGGCTTAGACATGGAATAAACTCCC
* * *
35828271 TATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCGCTCAACC-GATCGGAGAGGTAGAATGCA
182 TATGCCTAAACCAACCCACGAAATGAGCGTACAGGCGCTCAACCAG-CCGGAGAGGCAGAATGCA
* * * ** * * * * *
35828335 CAAATC-GGGGATCGGCAT-AGTCCCCCCTGCATGCTGTC-GATCCTGCTGAGGTAGCCCTTAAT
246 C-AAGCAAGGAATCAAC-TCAGTCCCCCCTGCATGCAG-CAGATCCTGCTGACGCAACCCTCAAT
* * * *
35828397 CCGGTCTGATCTTAGATTACGAATGAACTCCGTATG
308 CCAGTCCGATCTTAGACTACGAATGAACTCCATATG
* * ** * ** *
35828433 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCATTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * *
35828498 CTG-CCAGAGAGGCAGAATGCACAAGTCGGGGATCAGCCCGGTCCCCC-CTGC
66 C-GATCGGAGAGGCAAAATGCACAAGTCGGGGATCAGCCCGGTCCCCCTCTGC
35828549 TTGCTTTCGC
Statistics
Matches: 384, Mismatches: 66, Indels: 35
0.79 0.14 0.07
Matches are distributed among these distances:
343 96 0.25
344 1 0.00
345 1 0.00
346 1 0.00
347 3 0.01
348 2 0.01
349 1 0.00
350 4 0.01
351 1 0.00
352 2 0.01
353 1 0.00
354 3 0.01
355 261 0.68
356 7 0.02
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.19
Consensus pattern (343 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGATCGGAGAGGCAAAATGCACAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGTTGTCGGTCC
CGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAACCAA
CCCACGAAATGAGCGTACAGGCGCTCAACCAGCCGGAGAGGCAGAATGCACAAGCAAGGAATCAA
CTCAGTCCCCCCTGCATGCAGCAGATCCTGCTGACGCAACCCTCAATCCAGTCCGATCTTAGACT
ACGAATGAACTCCATATG
Found at i:35828617 original size:26 final size:26
Alignment explanation
Indices: 35828579--35828631 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35828569 CTGGTCCGAT
35828579 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35828605 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
35828631 C
1 C
35828632 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35828702 original size:172 final size:179
Alignment explanation
Indices: 35828248--35828789 Score: 506
Period size: 184 Copynumber: 3.0 Consensus size: 179
35828238 TCCGGCTGGG
* * * * * *
35828248 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAA
** * * ** ** ** *
35828313 CCGATCGGAGAGGTAGAATGCACAAATCGGGGATC-GGCATAGTCCCCCCTGCATGCTGTCGATC
66 CCGGCCAGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGA-TCCCCCCTGCGT-CTGTC-AT-
* * * ** * * * **
35828377 CTGCTGAGGTAGCCCTTAATCCGGTCTGATCTTAGATTACGAATGAACTCCGTAT
127 CT-CT-ACGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
*
35828432 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCATTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAA
* * * *
35828497 CCTGCCAGAGAGGCAGAATGCACAAGTCGGGGATCAGCCCGGTCCCCCCTGC-T-TG-C-T-T-T
66 CCGGCCAGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGATCCCCCCTGCGTCTGTCATCTCT
* *
35828556 -CGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATAT
131 ACGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* ** * ** *
35828604 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGATCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAA
* * * * *
35828669 CCGGTCGGGGAGGCAGACTGCGCAAGCCGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCC
66 CCGGCCAGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGATCCCCCCTGCGT-CTGTC-AT-C
*
35828734 TGCTACCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTAT
128 T-CTA-CGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
35828788 GC
1 GC
35828790 CTAAGTCAAC
Statistics
Matches: 296, Mismatches: 49, Indels: 26
0.80 0.13 0.07
Matches are distributed among these distances:
172 136 0.46
173 1 0.00
174 1 0.00
175 2 0.01
176 2 0.01
178 2 0.01
180 2 0.01
181 2 0.01
182 1 0.00
183 1 0.00
184 144 0.49
185 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.20
Consensus pattern (179 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAA
CCGGCCAGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGATCCCCCCTGCGTCTGTCATCTCT
ACGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:35829100 original size:158 final size:158
Alignment explanation
Indices: 35828605--35829106 Score: 387
Period size: 158 Copynumber: 3.2 Consensus size: 158
35828595 ACTCCATATG
* ** * *
35828605 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGATCGTGC-AG-GTGCTC
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTACGAGCGT--TG
* *** * * ** *
35828667 AGCCGGTCGGGGAGGCAGACTGCGCAAGC-CGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGA
63 AGCCGATCGAAAAGGCAGAATGCACAAGCTC-GGGATCGGCCCGCTCCCCCCTGCGTGCTGTCGA
* * * * *
35828731 TCCTGCTACCGCAACCC-TCGATCTGATCCGAT
127 TCCTGCTGCCACAACCCTTAGTTCAGA-CCGAT
* * ** * * *
35828763 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTGACGAAATGAGAGTATGGGCGTTGAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTACGAGCGTTGAGC
* * * * * * * *
35828828 CGGTCGGAAAGGCATAATGCATAAGCTTGGGATCGGCCCGCTCTCCCTCTGCGTACTGTCGGT-C
66 CGATCGAAAAGGCAGAATGCACAAGCTCGGGATCGGCCCGCTC-CCCCCTGCGTGCTGTCGATCC
* * **
35828892 TCACTGCCACAA-CCTTCGGTTCAG-CCGGGG
130 T-GCTGCCACAACCCTT-AGTTCAGACC-GAT
* * * * * *
35828922 CTTAGACAT-GGAATGAACTCCCTATGTCTAAGCCAACCCACGAAACGGGTGTACGATCGTTTAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTACGAGCGTTGAG
** *
35828986 CCGATC-AAAGAGGCAGAATGCACAAGC-CGAGGATCGGCTTGGTCCCCCCTGCGTGCTGTCGAT
65 CCGATCGAAA-AGGCAGAATGCACAAGCTCG-GGATCGGCCCGCTCCCCCCTGCGTGCTGTCGAT
35829049 CCTGCTGCCACAACCCTTAGTTCAGACCGAT
128 CCTGCTGCCACAACCCTTAGTTCAGACCGAT
*
35829080 CTTAGATTGGGAATGAACTCCGTATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
35829107 TTAGACAAGG
Statistics
Matches: 264, Mismatches: 64, Indels: 32
0.73 0.18 0.09
Matches are distributed among these distances:
157 2 0.01
158 141 0.53
159 114 0.43
160 7 0.03
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTACGAGCGTTGAGC
CGATCGAAAAGGCAGAATGCACAAGCTCGGGATCGGCCCGCTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTTAGTTCAGACCGAT
Found at i:35829404 original size:502 final size:500
Alignment explanation
Indices: 35828574--35829744 Score: 1600
Period size: 502 Copynumber: 2.3 Consensus size: 500
35828564 TCGGTCTGGT
* *
35828574 CCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
1 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCC
* * * *
35828639 AACCCATGAAACGATCGTGCAGGTGCTCAGCCGGTCGGGGAGGCAGACTGCGCAAGCCGGGGATC
66 AACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATC
* * * *
35828704 AACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCTGATCCGATCTTAGA
131 AACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCGCAATCCGATCCGATCTTAGA
* * * * *
35828769 CTGGGAATGAACTCCGTATGCCTAAGTCAACTGACGAAATGAGAGTATGGGCGTTGAGCCGGTCG
196 CTGGGAATGAACTCCGTATGCCTAAGTAAACTGACGAAACGAGAGGATGGGCG-TGAGCCGGACC
* * * * *
35828834 GAAAGGCATAATGCATAAGCTTGGGATCGGCCCGCTCTCCCTCTGCGTACTGTCGGTCTCACTGC
260 GAAAGGCATAATGCATAAGCTCGGGATCGACCCGCTCCCCCTCTGCATACTGTCGGTCCCACTGC
* ** * *
35828899 CACAACCTTCGGTTC-AGC-CGGGGCTTAGACATGGAATGAACTCCCTATGTCTAAGCCAACCCA
325 CACAACCCTCAATTCGA-CTAGGGG-TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * *
35828962 CGAAACGGGTGTACGATCGTTTAGCCGATCAAAGAGGCAGAATGCACAAGCCGAGGATCGGCTTG
388 CGAAACGGGTGTACGATCGCTCAGCCGATCAAAGAGGAAGAATGCACAAGCCGAGGATCGGCCTG
* *
35829027 GTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTTAGTTCAGA
453 GTCCCCCCTACGTGCTGTCGATCCTGCTACCACAACCCTTAGTTCAGA
* * *
35829075 CCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACAAGGAATGAATTCCGTATGCCTAAACC
1 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCC
* * * *
35829140 AACCCATGAAATGAGCGTGTGGGTGCTCAGTCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATC
66 AACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATC
* * * *
35829205 AACCCGGTACCTCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCGCAATCCGGTCTGATCTTAG
131 AACCCGAT-CCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCGCAATCCGATCCGATCTTAG
*
35829270 ACTGGGAATGAACTCCGTATGCCTAAGTAAACTGACGAAACGAGCATGCGA-GTGCG-GAGCC-G
195 ACTGGGAATGAACTCCGTATGCCTAAGTAAACTGACGAAACGAG-A-G-GATGGGCGTGAGCCGG
* * *
35829332 ACCGAAGAGGCATAATGC-TCAAGC-CGAGGATCGACCTGTTCCCCCTCTGCATGCTGTCGGTCC
257 ACCGAA-AGGCATAATGCAT-AAGCTCG-GGATCGACCCGCTCCCCCTCTGCATACTGTCGGTCC
*
35829395 CACTGCCACAACCCTCAATTCGACTAGGGGTTAGACATGGAATGAACTCCTTATGCCTAAGCCAA
319 CACTGCCACAACCCTCAATTCGACTAGGGGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * ** *
35829460 CCCATGAAACGGGTGTACGATCGCTCAGCCGGTCGGAGAGGAAGAATGCACAAGCTGAGGATCGG
384 CCCACGAAACGGGTGTACGATCGCTCAGCCGATCAAAGAGGAAGAATGCACAAGCCGAGGATCGG
* *
35829525 CCTGGTCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTTGGTTCAGA
449 CCTGGTCCCCCCTACGTGCTGTCGATCCTGCTACCACAACCCTTAGTTCAGA
** * *
35829577 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
1 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCC
* * * *
35829642 AACCCATGAAACGAGCGTACGGGTGCTCAGCCGGTTGAAGAGGCATAATGCGCAAGCCGGGGATC
66 AACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATC
* ** *
35829707 AGCCCGATCCCCCTCTGCGTGCTACCGATCCCGCTGCC
131 AACCCGATCCCCC-CTGCGTGCTGTCGATCCTGCTGCC
35829745 AGTCTTGCTA
Statistics
Matches: 585, Mismatches: 75, Indels: 19
0.86 0.11 0.03
Matches are distributed among these distances:
501 135 0.23
502 438 0.75
503 6 0.01
504 5 0.01
505 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (500 bp):
CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCC
AACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATC
AACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCGCAATCCGATCCGATCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGTAAACTGACGAAACGAGAGGATGGGCGTGAGCCGGACCG
AAAGGCATAATGCATAAGCTCGGGATCGACCCGCTCCCCCTCTGCATACTGTCGGTCCCACTGCC
ACAACCCTCAATTCGACTAGGGGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
AACGGGTGTACGATCGCTCAGCCGATCAAAGAGGAAGAATGCACAAGCCGAGGATCGGCCTGGTC
CCCCCTACGTGCTGTCGATCCTGCTACCACAACCCTTAGTTCAGA
Found at i:35829618 original size:26 final size:26
Alignment explanation
Indices: 35829582--35829634 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35829572 TCAGACCGAT
35829582 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35829608 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35829634 C
1 C
35829635 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35831047 original size:26 final size:26
Alignment explanation
Indices: 35830997--35831048 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
35830987 CCGGTCTGAT
**
35830997 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35831023 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35831049 TTTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35831952 original size:159 final size:154
Alignment explanation
Indices: 35831662--35832163 Score: 429
Period size: 159 Copynumber: 3.2 Consensus size: 154
35831652 ACTTTGTATG
* * * *
35831662 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAGC
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
35831727 TGACTGGAGAGGTAGAATGTGTAAGCCAGGGATCAACCCAGTCCCCCCCTGTATGCTGTCAATCC
66 AG-CCGGAGAGGCAGAATGCGCAAGCGA-GGATCGACCCAGT--CCCCCTGCATGCTGTCAGTCC
* *
35831792 TGCTTCTGCAACCCTCGGTCTGGTCTGAT
127 TGCTTC-ACAACCCTCGGTCCGGTCTGAT
* * *
35831821 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
*
35831885 TCAGCCGGAGAGGCATAATGCGCAAGCTGAGGATCGACCCAGTCCCACTCTGCATGCTGTCAGTC
65 -CAGCCGGAGAGGCAGAATGCGCAAGC-GAGGATCGACCCAGTCCC-C-CTGCATGCTGTCAGTC
* * **
35831950 CTGCTACCCCAACCCTCGGTCCGGT-TGGGG
126 CTGCT-TCACAACCCTCGGTCCGGTCT-GAT
* * * * * * *
35831980 CTTAGACATAGAATGAA-TTCCCTATGCCCAAGCCAACCGATGAAACGGGTGCGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTT-CGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * ** ** * * *
35832044 CCAGCCGAAGAGGCAGAATGCGCGAGCCGAGGATCGGTCGGGTCCCCCTACGTGCTG-CCGATCC
65 -CAGCCGGAGAGGCAGAATGCGCAAG-CGAGGATCGACCCAGTCCCCCTGCATGCTGTCAG-TCC
** *
35832108 TGCTGTCACTGCCCTCGGTCCAGTCTGAT
127 TGCT-TCACAACCCTCGGTCCGGTCTGAT
35832137 CTTAGAC-TGGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTTCGTATGC
35832164 TTAGATTGGG
Statistics
Matches: 276, Mismatches: 53, Indels: 30
0.77 0.15 0.08
Matches are distributed among these distances:
156 3 0.01
157 53 0.19
158 9 0.03
159 205 0.74
160 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (154 bp):
CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
AGCCGGAGAGGCAGAATGCGCAAGCGAGGATCGACCCAGTCCCCCTGCATGCTGTCAGTCCTGCT
TCACAACCCTCGGTCCGGTCTGAT
Found at i:35832166 original size:26 final size:26
Alignment explanation
Indices: 35832137--35832189 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35832127 CCAGTCTGAT
*
35832137 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
35832163 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35832189 C
1 C
35832190 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35833255 original size:159 final size:158
Alignment explanation
Indices: 35832840--35833268 Score: 477
Period size: 159 Copynumber: 2.7 Consensus size: 158
35832830 AACTCCATAT
* ** *
35832840 GCTTAGACATGGAATGAACTGCGTATGCCTAAGCCAACCCACGAAACGAGCGTAAGGGCGCTCAT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
35832905 CCGATCAGAGATGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGTCGATCC
66 CCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
* ** * *
35832970 TACTACTGCAACCCTCGGTCTGGTCTGA
131 CACTACCACAACCCTCAGTCCGGTCTGA
* * * *
35832998 TCTTAGAC-TGGTAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * *
35833062 GCCGACCGAAGAGGCATAATACGCAAGCCAGGGATCAACCTGGTCCCCCTCTACGTGCTG-CTGG
65 GCCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTACGTGCTGTC-GA
* * *
35833126 TCCCGCTGCCACAACCCTCAGTCCGG-CTGGG
128 TCCCACTACCACAACCCTCAGTCCGGTCT-GA
* * * * *
35833157 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGAGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* **
35833222 CCGGTCGGAGAGGCAAAATGCGCAAGTTGGGGATCGACCCGGTCCCC
66 CCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCC
35833269 ACTGCATGCT
Statistics
Matches: 220, Mismatches: 46, Indels: 9
0.80 0.17 0.03
Matches are distributed among these distances:
157 3 0.01
158 94 0.43
159 120 0.55
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
CACTACCACAACCCTCAGTCCGGTCTGA
Found at i:35833357 original size:26 final size:26
Alignment explanation
Indices: 35833316--35833368 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35833306 TCGGTCCAAT
35833316 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
35833342 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
35833368 C
1 C
35833369 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:35833695 original size:26 final size:26
Alignment explanation
Indices: 35833655--35833707 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35833645 GATCCTGCTA
35833655 CTGGTCCTACAGTCGCAACCCTCGGT
1 CTGGTCCTACAGTCGCAACCCTCGGT
* * *
35833681 CTGGTCCTGCTGTCGCAACCTTCGGT
1 CTGGTCCTACAGTCGCAACCCTCGGT
35833707 C
1 C
35833708 CAGTCCAATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.11, C:0.38, G:0.25, T:0.26
Consensus pattern (26 bp):
CTGGTCCTACAGTCGCAACCCTCGGT
Found at i:35833754 original size:26 final size:26
Alignment explanation
Indices: 35833717--35833769 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35833707 CCAGTCCAAT
*
35833717 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
35833743 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
35833769 C
1 C
35833770 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:35834222 original size:158 final size:159
Alignment explanation
Indices: 35833881--35834235 Score: 371
Period size: 158 Copynumber: 2.2 Consensus size: 159
35833871 CTACTACCGT
* ** *
35833881 AACCCTCCGTCTGGTCCAATCTTAGACTAGGAATGAAATCCATATGCCTAAGCCAACCCATAAAA
1 AACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCATAAAA
* * * ** ** * * *
35833946 TGAGTGTGCGGGCACTGAGCTGGCCGGAGAGGCATAATGCACAAGTCGAGGATCGACCCGGTCCC
66 TGAGCGTACGGGCACTCAGCCAGCCAAAGAGGCAGAATGCACAAGCCAAGGATCGACCCGGTCCC
* *
35834011 CCTCTATGTGCTGCCGGTCTCGCTGCCAC
131 CCTCTACGTGCTGCCGATCTCGCTGCCAC
* *** * *
35834040 AACCCTCGGTCCGG-CTGGGGTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
1 AACCCTCGGTCTGGTCTGATCTTAGACTA-GGAATGAACTCCATATGCCTAAGCCAACCCATAAA
* ** *
35834103 ATGGGCGTACGGGTGCTCAGCCAGCCAAAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCC
65 ATGAGCGTACGGGCACTCAGCCAGCCAAAGAGGCAGAATGCACAAGCCAAGGATCGACCCGGTCC
* *
35834168 CCC-CTGCGTGCTGCCGATCCTACTGTTG-C-C
130 CCCTCTACGTGCTGCCGAT-CT-C-GCTGCCAC
*
35834198 -ACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
1 AACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACT
35834236 TTGTATGCTT
Statistics
Matches: 157, Mismatches: 33, Indels: 13
0.77 0.16 0.06
Matches are distributed among these distances:
157 25 0.16
158 115 0.73
159 14 0.09
160 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (159 bp):
AACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCATAAAA
TGAGCGTACGGGCACTCAGCCAGCCAAAGAGGCAGAATGCACAAGCCAAGGATCGACCCGGTCCC
CCTCTACGTGCTGCCGATCTCGCTGCCAC
Found at i:35834267 original size:26 final size:26
Alignment explanation
Indices: 35834217--35834269 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35834207 CTGGTCTGAT
**
35834217 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35834243 CTTAGACTGTGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
35834269 C
1 C
35834270 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35835524 original size:26 final size:27
Alignment explanation
Indices: 35835480--35835533 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
35835470 CTGGTCCAAT
35835480 CTTAGACATGGGAATGAACTCCGTATG
1 CTTAGACATGGGAATGAACTCCGTATG
*
35835507 CTTAGAC-TGGGGATGAACTCCGTATG
1 CTTAGACATGGGAATGAACTCCGTATG
35835533 C
1 C
35835534 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (27 bp):
CTTAGACATGGGAATGAACTCCGTATG
Found at i:35835567 original size:356 final size:353
Alignment explanation
Indices: 35834912--35835824 Score: 1042
Period size: 356 Copynumber: 2.5 Consensus size: 353
35834902 GGATCGACCT
** * * *
35834912 GGTCCCCCTCTATGTGCTACCGGTCTCCCTACCACAACCC-TCGATCTGGCTGGGGCTTAGACAT
1 GGTCCCCCTCTGCGTGCTGCCAGTC-CCCTACCACAACCCTTAG-TCTGGCT-GGGCTTAGACAT
* * * ** * *
35834976 TGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATACGGACGCTTAA-CCGACTGGA
63 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGACGC-TAAGCCGAC-AGA
* * *
35835040 GAGGCAGAATGCGTAAGTCAGGGATCGGCCCGGTCACCCCTGCGTGCTGTCGATCCTGCTACCGC
126 GAGGCAGAATGCGTAAGTCAGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGC
* * *
35835105 TACCCTCAGTCAGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTGGACTGGGGATTAACT
191 AACCCTCAGTCAGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACT
* * *
35835170 CCATTTACCTAAATCAACCCATGAAACGAGCGTACGGGCGCTCAGCTGACCAGAGAGG-CCGATC
256 CCATATACCTAAATCAACCCATGAAACGAGCGTACGGGCGCTAAGCTGACCAAAGAGGTCCGA-C
35835234 GGAGAGGCATAATGCGTAAGCCAGGGATCAGCCC
320 GGAGAGGCATAATGCGTAAGCCAGGGATCAGCCC
* *
35835268 GGTCCCCCTCTGCGTGCTGCCAGTCCCACTACCAGAACCCTTAGTCTGGCTAGCGCTTAGACATG
1 GGTCCCCCTCTGCGTGCTGCCAGTCCC-CTACCACAACCCTTAGTCTGGCT-GGGCTTAGACATG
* * *
35835333 GAATGAACTCCCTATGCCTAAGCTAACCCACGAAACAAGTGTGCGGGCGCTAAGCCGATCAGAGA
64 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGACGCTAAGCCGA-CAGAGA
* * * *
35835398 GGCAGAATGCGTAAGTCAGGG-TTGACCTGGTCCCCCCTGCGTGCTGTCGATCTTGCTGTCGCAA
128 GGCAGAATGCGTAAGTCAGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAA
* * *
35835462 CCCTCGGTCTGGTCCAATCTTAGACATGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTC
193 CCCTCAGTCAGGTCCAATCTTAGAC-TGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTC
* * * * * *
35835527 CGTATGCCTAAGTCAACCCATGAAATGAGCGTATGGGCGCTAAGCTGACCAAAGAGGTCGGACGG
257 CATATACCTAAATCAACCCATGAAACGAGCGTACGGGCGCTAAGCTGACCAAAGAGGTCCGACGG
**
35835592 AGAGGCATAATGCGTAAGCTGGGGATCAGCCC
322 AGAGGCATAATGCGTAAGCCAGGGATCAGCCC
* * * * **
35835624 GATCACCCTTTGCGTGCTGCCGATCCCGCTGTCAGTCCTGCTACCACAACCCTCAGTCCAGCTGG
1 GGTC-CCC----C-T-CTG-CG-T---GCTGCCAGTCC-CCTACCACAACCCTTAGTCTGGCTGG
* * * * * *
35835689 GCTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCACGAAACGAGTGTGTGGTCCCTCAG
53 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGACGCTAAG
* * * * * * *
35835754 CCGGCTGAAGAGGCAGAATGCGCAAGTCAGGGATCGGCTTGGTTCCCCCTACGTGCTGCCGATCC
118 CCGACAG-AGAGGCAGAATGCGTAAGTCAGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCC
35835819 TGCTGC
182 TGCTGC
35835825 TGGTCCTGCT
Statistics
Matches: 467, Mismatches: 69, Indels: 30
0.83 0.12 0.05
Matches are distributed among these distances:
355 63 0.13
356 242 0.52
357 9 0.02
361 1 0.00
362 1 0.00
363 3 0.01
364 2 0.00
365 1 0.00
366 2 0.00
367 84 0.18
368 59 0.13
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (353 bp):
GGTCCCCCTCTGCGTGCTGCCAGTCCCCTACCACAACCCTTAGTCTGGCTGGGCTTAGACATGGA
ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGACGCTAAGCCGACAGAGAGGC
AGAATGCGTAAGTCAGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCC
TCAGTCAGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCATA
TACCTAAATCAACCCATGAAACGAGCGTACGGGCGCTAAGCTGACCAAAGAGGTCCGACGGAGAG
GCATAATGCGTAAGCCAGGGATCAGCCC
Found at i:35835911 original size:26 final size:26
Alignment explanation
Indices: 35835860--35835912 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35835850 GCATTTTGAT
*
35835860 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35835886 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
35835912 C
1 C
35835913 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35836059 original size:26 final size:26
Alignment explanation
Indices: 35836018--35836070 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35836008 CTGGTCCAAT
*
35836018 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
35836044 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
35836070 C
1 C
35836071 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35836664 original size:11 final size:11
Alignment explanation
Indices: 35836648--35836680 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
35836638 CGGTTAGGCT
35836648 CTCCGACGATG
1 CTCCGACGATG
*
35836659 CTCCGACGGTG
1 CTCCGACGATG
35836670 CTCCGACGATG
1 CTCCGACGATG
35836681 GTGCCCCGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.15, C:0.36, G:0.30, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:35836787 original size:25 final size:26
Alignment explanation
Indices: 35836750--35836801 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
35836740 GGCTCAAAAT
35836750 CTTAGACTGGGAATGAACTCC-TATG
1 CTTAGACTGGGAATGAACTCCGTATG
35836775 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35836801 C
1 C
35836802 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35836969 original size:26 final size:26
Alignment explanation
Indices: 35836933--35836985 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35836923 CTAGTTCGAT
* *
35836933 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35836959 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
35836985 C
1 C
35836986 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35837960 original size:159 final size:157
Alignment explanation
Indices: 35837660--35838161 Score: 501
Period size: 159 Copynumber: 3.2 Consensus size: 157
35837650 CTCTGTATGG
* * *
35837660 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCTAACCCAAAAAATGAGCGTGCGAGCGCTCAGT
1 TTAGA-ATGGGAATGAACTCCGTATGCCTAAGC-AACCCACAAAATGAGCGTGCGGGCGCTCAGC
* * * *
35837724 CGGTCGGAGAGGCAGAATGCGTAAGTCGGGGATTGACCCGATCCCCCCCTG-TGTGCTATCGATC
64 CGCT-GGAGAGGCAGAATGCGTAAGTCGGGGATTGGCTCGATCCCCCTCTGCT-TGCTATCGATC
* * * **
35837788 CTGTTGCTGCAACCCTCAGTTTGATCTGATC
127 CTGCTGCCGCAACCCTCGGTCCGATCTGATC
* * * *
35837819 TTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTGAGCC
1 TTAGAATGGGAATGAACTCCGTATGCCTAAG-CAACCCACAAAATGAGCGTGCGGGCGCTCAGCC
* * * * *
35837884 AGCTGGAGAGGCATAATGCGCAAGTCGGGGATTGGCTCGATCCCCCTCTGCTTGCTGTCGGTCCC
65 -GCTGGAGAGGCAGAATGCGTAAGTCGGGGATTGGCTCGATCCCCCTCTGCTTGCTATCGATCCT
* **
35837949 GCTGCCACAACCCTCGGTCCGA-CTGGGGC
129 GCTGCCGCAACCCTCGGTCCGATCT-GATC
* * * * * *
35837978 TTAGACAT-GGAACGAACTCCCTATGCCTAAGCCAACGCACAAAATGGGCATGCGGGCACTCAGC
1 TTAGA-ATGGGAATGAACTCCGTATGCCTAAG-CAACCCACAAAATGAGCGTGCGGGCGCTCAGC
* * * * * * *
35838042 CGACTGGAGAGGCAGAATGGGTAAGCCGAGGATAGGGTCGGT-CCCCTCTGCGTGCTATCGATCC
64 CG-CTGGAGAGGCAGAATGCGTAAGTCGGGGATTGGCTCGATCCCCCTCTGCTTGCTATCGATCC
** *
35838106 TGCTATCGTAACCCTCGGTCCGATCTGATC
128 TGCTGCCGCAACCCTCGGTCCGATCTGATC
* *
35838136 TTAGACTGGGAATGAACTCCATATGC
1 TTAGAATGGGAATGAACTCCGTATGC
35838162 ATAGACTGGG
Statistics
Matches: 278, Mismatches: 56, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
157 1 0.00
158 64 0.23
159 208 0.75
160 5 0.02
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (157 bp):
TTAGAATGGGAATGAACTCCGTATGCCTAAGCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCG
CTGGAGAGGCAGAATGCGTAAGTCGGGGATTGGCTCGATCCCCCTCTGCTTGCTATCGATCCTGC
TGCCGCAACCCTCGGTCCGATCTGATC
Found at i:35838176 original size:26 final size:26
Alignment explanation
Indices: 35838137--35838187 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
35838127 GATCTGATCT
35838137 TAGACTGGGAATGAACTCCATATGCA
1 TAGACTGGGAATGAACTCCATATGCA
* *
35838163 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
35838188 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCA
Found at i:35838906 original size:26 final size:26
Alignment explanation
Indices: 35838868--35838919 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35838858 GGCTCAAAAT
* *
35838868 CTTAGACTGGGAATGAGCTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35838894 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35838920 ACTAAGCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35839398 original size:26 final size:26
Alignment explanation
Indices: 35839369--35839421 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35839359 CCGATCTAAT
35839369 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
35839395 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
35839421 C
1 C
35839422 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:35839807 original size:502 final size:502
Alignment explanation
Indices: 35838865--35839909 Score: 1298
Period size: 502 Copynumber: 2.1 Consensus size: 502
35838855 CGTGGCTCAA
*
35838865 AATCTTAGACTGGGAATGAGCTTCGTATGCTTAGAC-ATGGAATGAACTCCGTATGACTAAGCCA
1 AATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTA-GGAATGAACTCCGTATGACTAAGCCA
* * * * **
35838929 ACCCACGAAACGAGCGCGCGGGCACTCAGTCGATCGGAGAGGCAGAATGCGTAAGTCGAGGATTG
65 ACCCACGAAACGAGCGCGCGAGCACTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCA
* * ** * * ** *
35838994 GCTCTGTCCCCCTCTGAGTGCTATTGATCCTGCTGTCGCAACCCTCGGTCTAGTCCAATCTTTGA
130 GCCCTGTCCCCCTATGAGTGCTATCAATCCTGCTATCACAACCCTCAATCTAGTCCAATCTTAGA
* * * * *
35839059 TTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCATGCGGGCATTGAGCAGGTCG
195 CTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCGGGCACTGAGCAGGCCG
* * *
35839124 AAGAGGCATAATGCGAAAGCCAGGGATCGACCCGGTCCCCCTCTACATGCTGTCGGTCCCGTTGC
260 AAGAGGCATAATGCGAAAGCCAGGGATCGACCCAGTCCCCCTCTACATGCTGCCGGTCCCGCTGC
* *
35839189 CACAACCCTCAGTCTGGTTGGGGCTTAGACATGGAATGAACTCCCTCTACCTAAGCCAACCCATG
325 CACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATG
* * * * * *
35839254 AAATGGGTGTACGGGTGCTCAACCGATCGGAGAGGCAGAATGTGTAAGCCGGGGATCAGCTCGAT
390 AAACGGGTATACGGGCGCTCAACCGATCGGAGAGACAGAATGTGCAAGCCGGGGATCAGCCCGAT
* * * * *
35839319 -GCCCCTGTGTGCTACCGATCCTGCTACCG-CAACCATCGATCCGA-TC
455 CCCCCCCGCGTGCTACCGATCCTACT-CCGACAACCATCGATACGATTC
* * * *
35839365 TAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCA
1 -AATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGACTAAGCCA
* * *
35839430 ACCCACGAAACGAGCGTGCGAGCACTCAGCCGACCGGAGAGGCAGAATGTGTAAGCCGGGGATCA
65 ACCCACGAAACGAGCGCGCGAGCACTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCA
* * * * *
35839495 GCCC-GTTCCCCCCTATG-GTTGGTGTCAATCTTGCTATCACAACCCTCAATCCT-GTTCATTCT
130 GCCCTG-T-CCCCCTATGAG-TGCTATCAATCCTGCTATCACAACCCTCAAT-CTAGTCCAATCT
* * *
35839557 TAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCTTGCGGGCGCTGAGCCA
191 TAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCGGGCACTGAG-CA
* * * * *
35839622 -GCCGAAGAGGCATAATGCGCAAG-CTGAGGATCGACCCATTCCCCCTCTGCGTGCTGCCGGTCC
255 GGCCGAAGAGGCATAATGCGAAAGCCAG-GGATCGACCCAGTCCCCCTCTACATGCTGCCGGTCC
* * *
35839685 CGCTGCCATAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
319 CGCTGCCACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAA
** * * *
35839750 CCCATGAAACGGGTATACGGGCGCTCAGTCGGTTGGAGAGACAGAATGTGCAAGCCGGGGATCGG
384 CCCATGAAACGGGTATACGGGCGCTCAACCGATCGGAGAGACAGAATGTGCAAGCCGGGGATCAG
* * * * *
35839815 CCCGGTCCCCCCCGCGTGCTGCCGATCCTACTGCGACAACCCTCGATACGGTTC
449 CCCGATCCCCCCCGCGTGCTACCGATCCTACTCCGACAACCATCGATACGATTC
* *
35839869 AATCTTAGATTGGGAATGAACTTCGTATGCTTAGATTAGGA
1 AATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGA
35839910 CCAGCTAGCC
Statistics
Matches: 460, Mismatches: 74, Indels: 18
0.83 0.13 0.03
Matches are distributed among these distances:
500 1 0.00
501 120 0.26
502 264 0.57
503 73 0.16
504 2 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (502 bp):
AATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGACTAAGCCAA
CCCACGAAACGAGCGCGCGAGCACTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCAG
CCCTGTCCCCCTATGAGTGCTATCAATCCTGCTATCACAACCCTCAATCTAGTCCAATCTTAGAC
TGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCGGGCACTGAGCAGGCCGA
AGAGGCATAATGCGAAAGCCAGGGATCGACCCAGTCCCCCTCTACATGCTGCCGGTCCCGCTGCC
ACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATGA
AACGGGTATACGGGCGCTCAACCGATCGGAGAGACAGAATGTGCAAGCCGGGGATCAGCCCGATC
CCCCCCGCGTGCTACCGATCCTACTCCGACAACCATCGATACGATTC
Found at i:35841611 original size:26 final size:26
Alignment explanation
Indices: 35841582--35841634 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35841572 CTGATCCGAT
*
35841582 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGAGTGGGAATGAACTCCGTATG
* *
35841608 CTTAGAGTGGGGATGAACTCGGTATG
1 CTTAGAGTGGGAATGAACTCCGTATG
35841634 C
1 C
35841635 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.28
Consensus pattern (26 bp):
CTTAGAGTGGGAATGAACTCCGTATG
Found at i:35843271 original size:159 final size:158
Alignment explanation
Indices: 35842858--35843251 Score: 443
Period size: 159 Copynumber: 2.5 Consensus size: 158
35842848 TCTGTAAGCT
* * * *
35842858 TAGACATGGAATGAACTCCGTATGCCCAAACCAACCCATGAAACGAGCGTGCGGGCACTCAACCA
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCA
* * * * * *
35842923 GCCGGAA-AGGCAAAATGTGCAAGTCGGGGATCGGCCCGGTCCCCCCTGTGTGCTATCGATCTTG
66 GCC-AAAGAGGCAAAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCTCG
** * * *
35842987 CTCCCACAACCATTGATCCGGTTTGATCT
130 CTCCCACAACCATTGATCCGACTAGAGCC
* * * * * * *
35843016 TAGAC-TGGGAATGAAGTTCGTATGCATAAGTCAACCCATGAAACGAGCGTGCAGGTGCTGAGCC
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
* * *
35843080 GGCCAAAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTGCGTGCTACCGGTCTC
65 AGCCAAAGAGGCAAAATGCGCAAGTCGGGGATCGACCCGGTCCCCC-CTGCGTGCTACCGATCTC
* * *
35843145 GCTGCCACAATCC-TTGGTCCGACTAGGGCC
129 GCTCCCACAA-CCATTGATCCGACTAGAGCC
* * *
35843175 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAGCCA
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCA
*
35843240 GTCAAAGAGGCA
66 GCCAAAGAGGCA
35843252 GAATACATAA
Statistics
Matches: 191, Mismatches: 40, Indels: 9
0.80 0.17 0.04
Matches are distributed among these distances:
157 3 0.02
158 89 0.47
159 96 0.50
160 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.18
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCA
GCCAAAGAGGCAAAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCTCGC
TCCCACAACCATTGATCCGACTAGAGCC
Found at i:35845814 original size:26 final size:26
Alignment explanation
Indices: 35845762--35845814 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
35845752 CCAATCCGAT
***
35845762 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCACATG
35845788 CTTAGACTAGGG-ATGAACTCCACATG
1 CTTAGACT-GGGAATGAACTCCACATG
35845814 C
1 C
35845815 CAAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:35847882 original size:159 final size:157
Alignment explanation
Indices: 35847540--35847885 Score: 349
Period size: 158 Copynumber: 2.2 Consensus size: 157
35847530 TAGACTTCGT
*
35847540 ATGAAATCCATATGCCTAAGCCAACCCACGAAACGAGCGCGCAAGTGCTCAGCCGACCGGAGAGG
1 ATGAAATCCATATGCCTAAGCCAACCCACGAAACGA-CGCGCAAGGGCTCAGCCGACCGGAGAGG
* * * * *
35847605 CAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCCTGCATGCTGTCGATCCTGCTACCGCAACC
65 CAGAATGCGAAAGCCGAGGACCGACCCGATCCCCCCTGCATGCTGTCAATCCCGCTACCACAACC
*
35847670 CATCATTCGATCTGATCTTAGACTGGGA
130 CATCATCCGATCTGATCTTAGACTGGGA
* *** * * * * * **
35847698 ATGAATTTTGTATGCCTAAGTCAACCCACGAAACGA-GCGTACGGGCATTGAGCTGGTCGGAGAG
1 ATGAAATCCATATGCCTAAGCCAACCCACGAAACGACGCGCAAGGGC--TCAGCCGACCGGAGAG
* * * * **
35847762 GCATAATGCGAAAGTCGAGGATCGACCCGGTCCCCCTCTGTGTGCTGTCAATCCCGCTACCACAA
64 GCAGAATGCGAAAGCCGAGGACCGACCCGATCCCCC-CTGCATGCTGTCAATCCCGCTACCACAA
* *
35847827 CCC-TCAATCCGA-CTGGTGTTTAGACAT-GGA
128 CCCATC-ATCCGATCTGAT-CTTAGAC-TGGGA
* *
35847857 ATGAACTCCCTATGCCTAAGCCAACCCAC
1 ATGAAATCCATATGCCTAAGCCAACCCAC
35847886 AAAATAGGTG
Statistics
Matches: 151, Mismatches: 31, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
156 7 0.05
158 79 0.52
159 64 0.42
160 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.24, T:0.19
Consensus pattern (157 bp):
ATGAAATCCATATGCCTAAGCCAACCCACGAAACGACGCGCAAGGGCTCAGCCGACCGGAGAGGC
AGAATGCGAAAGCCGAGGACCGACCCGATCCCCCCTGCATGCTGTCAATCCCGCTACCACAACCC
ATCATCCGATCTGATCTTAGACTGGGA
Found at i:35847902 original size:159 final size:157
Alignment explanation
Indices: 35847596--35847980 Score: 393
Period size: 159 Copynumber: 2.4 Consensus size: 157
35847586 GCTCAGCCGA
* * **
35847596 CCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCCTGCATGCTGTCGATCCTGCT
1 CCGGAGAGGCAGAATGCGCAAG-CGGGGATCGACCCGGTCCCCCCTGTGTGCTGTCGATCCTGCT
* * * *** *
35847661 ACCGCAACCCATCATTCGATCTGATCTTAGACTGGGAATGAATTTTGTATGCCTAAGTCAACCCA
65 ACCACAACCCATCATCCGATCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * *
35847726 CGAAACGAGCGTACGGGCA-TTGAGCTGG
130 CAAAAAGAGCGTACGGGCACTT-AACCGG
* * * * * *
35847754 TCGGAGAGGCATAATGCGAAAGTCGAGGATCGACCCGGTCCCCCTCTGTGTGCTGTCAATCCCGC
1 CCGGAGAGGCAGAATGCGCAAG-CGGGGATCGACCCGGTCCCCC-CTGTGTGCTGTCGATCCTGC
* *
35847819 TACCACAACCC-TCAATCCGA-CTGGTGTTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAA
64 TACCACAACCCATC-ATCCGATCTGAT-CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAA
* *
35847881 CCCACAAAATAG-GTGTGCGGGCACTTAACCGG
126 CCCACAAAA-AGAGCGTACGGGCACTTAACCGG
* * * *
35847913 CCGAAGAGGCAGAATGCGCAAGCTGGGGATTGATCCGGTCCCCCCTGTGTGCTGCCGATCCTGCT
1 CCGGAGAGGCAGAATGCGCAAGC-GGGGATCGACCCGGTCCCCCCTGTGTGCTGTCGATCCTGCT
35847978 ACC
65 ACC
35847981 GTAACCTTCG
Statistics
Matches: 184, Mismatches: 36, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
158 65 0.35
159 115 0.62
160 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
CCGGAGAGGCAGAATGCGCAAGCGGGGATCGACCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTA
CCACAACCCATCATCCGATCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCAC
AAAAAGAGCGTACGGGCACTTAACCGG
Found at i:35847974 original size:512 final size:512
Alignment explanation
Indices: 35847038--35847977 Score: 1152
Period size: 512 Copynumber: 1.8 Consensus size: 512
35847028 ATGAACTTTG
* * *** * *
35847038 TATGCCTAAGCCAACCCATGAAACGAGCATGTGGGCGCTCAACCGATCGAAGAGGCAAAATGTGC
1 TATGCCTAAGCCAACCCACGAAACGAGCACGCAAGCGCTCAACCGACCGAAGAGGCAAAATGCGC
* * * * ** *
35847103 AAGCCGGAGATCGGCCCGATTCCCCCATACGTGCTATTGATCCTGCTATTGTAACCCTCAGACTG
66 AAGCCGGAGACCGACCCGATTCCCCCATACATGCTATCGATCCTGCTACCGCAACCCTCAGACTG
* * * *
35847168 GTCTGATTTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCATGAAACGAGCGTGCAGGC
131 ATCTGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTACAGGC
* * * *
35847233 ACTTAGCTAACGAAGAGGCATAATGTGCAAGCTGGGGATTGACCCGGTCCCCCTCTGTGTGCTGC
196 ACTTAGCTAACGAAGAGGCATAATGCGAAAGCTGAGGATCGACCCGGTCCCCCTCTGTGTGCTGC
* * * ** * *
35847298 CGATCCCATTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTC
261 CAATCCCACTACCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
* *** * ** * * *
35847363 GGCCAACCCGTGAAACGGGTGTACGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGTAAGCTGAG
326 AGCCAACCCACAAAACAGGTGTACGGGCACTCAACCGGCCGAAGAGGCAGAATGCGCAAGCTGAG
*
35847428 GATCGGCTCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCTGGTCCTGCTGCCGCAACACTCGAT
391 GATCGGCTCGGTCCCCCCTACGTGCTGCCGATCCTGCTGCTGGTCCTGCTGCCGCAACACTCGAT
35847493 CCGGTTGATATTAGACTAGGAATGAACTTCGTATTCATAGACTTCGTATGAAATCCA
456 CCGGTTGATATTAGACTAGGAATGAACTTCGTATTCATAGACTTCGTATGAAATCCA
* * * * *
35847550 TATGCCTAAGCCAACCCACGAAACGAGCGCGCAAGTGCTCAGCCGACCGGAGAGGCAGAATGCGC
1 TATGCCTAAGCCAACCCACGAAACGAGCACGCAAGCGCTCAACCGACCGAAGAGGCAAAATGCGC
* * * * **
35847615 AAGCCGGGGACCGACCCGA-TCCCCCCTGCATGCTGTCGATCCTGCTACCGCAACCCATCATTC-
66 AAGCCGGAGACCGACCCGATTCCCCCATACATGCTATCGATCCTGCTACCGCAACCC-TCAGACT
* *** * *
35847678 GATCTGATCTTAGACTGGGAATGAATTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGG
130 GATCTGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTACAGG
** *
35847743 CA-TTGAGCTGGTCGGAGAGGCATAATGCGAAAG-TCGAGGATCGACCCGGTCCCCCTCTGTGTG
195 CACTT-AGCT-AACGAAGAGGCATAATGCGAAAGCT-GAGGATCGACCCGGTCCCCCTCTGTGTG
* * * *
35847806 CTGTCAATCCCGCTACCACAACCCTCAATCCGACTGGTGTTTAGACATGGAATGAACTCCCTATG
257 CTGCCAATCCCACTACCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATG
* * *
35847871 CCTAAGCCAACCCACAAAATAGGTGTGCGGGCACTTAACCGGCCGAAGAGGCAGAATGCGCAAGC
322 CCTAAGCCAACCCACAAAACAGGTGTACGGGCACTCAACCGGCCGAAGAGGCAGAATGCGCAAGC
* * * **
35847936 TGGGGAT-TGATCCGGTCCCCCCTGTGTGCTGCCGATCCTGCT
387 TGAGGATCGGCT-CGGTCCCCCCTACGTGCTGCCGATCCTGCT
35847978 ACCGTAACCT
Statistics
Matches: 351, Mismatches: 72, Indels: 10
0.81 0.17 0.02
Matches are distributed among these distances:
510 2 0.01
511 93 0.26
512 256 0.73
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (512 bp):
TATGCCTAAGCCAACCCACGAAACGAGCACGCAAGCGCTCAACCGACCGAAGAGGCAAAATGCGC
AAGCCGGAGACCGACCCGATTCCCCCATACATGCTATCGATCCTGCTACCGCAACCCTCAGACTG
ATCTGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTACAGGC
ACTTAGCTAACGAAGAGGCATAATGCGAAAGCTGAGGATCGACCCGGTCCCCCTCTGTGTGCTGC
CAATCCCACTACCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
AGCCAACCCACAAAACAGGTGTACGGGCACTCAACCGGCCGAAGAGGCAGAATGCGCAAGCTGAG
GATCGGCTCGGTCCCCCCTACGTGCTGCCGATCCTGCTGCTGGTCCTGCTGCCGCAACACTCGAT
CCGGTTGATATTAGACTAGGAATGAACTTCGTATTCATAGACTTCGTATGAAATCCA
Found at i:35850005 original size:26 final size:26
Alignment explanation
Indices: 35849967--35850016 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
35849957 GGCTCAAAAT
35849967 CTTAGACTGGGAATGAACTACGTAAG
1 CTTAGACTGGGAATGAACTACGTAAG
*
35849993 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTACGTA
35850017 TGGCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTAAG
Found at i:35850378 original size:159 final size:159
Alignment explanation
Indices: 35849990--35850411 Score: 427
Period size: 160 Copynumber: 2.6 Consensus size: 159
35849980 TGAACTACGT
*
35849990 AAGCTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTC
1 AAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GAGCATGCGGGCGCTC
** * * **
35850055 AGCCGGTTGGAAAGGCAGAATGCGCAAGTCGGGGATCGACCTAGTCCCCTCCTGCGTGCTGTCGA
65 AGCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCAGTCCCCTCCTGCGTGCTACCGA
** *** * * *
35850120 TATTGCTGCTGTAACCCTCGGTCCGGTTCG
130 TACCGCTGCCACAACCATCGGTCCGGCTAG
* * * * * * * * *
35850150 AATCTTTGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAACTGTGCGGGCACT
1 AAGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGAGC-ATGCGGGCGCT
* * *
35850214 GAGCCGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCC-CTCTGCGTGCTACC
64 CAGCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCAGTCCCCTC-CTGCGTGCTACC
* *
35850278 GATCCCGCTGCCACAACCATCGGTCTGGCTAG
128 GATACCGCTGCCACAACCATCGGTCCGGCTAG
* * *
35850310 -GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGCGCTC
1 AAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GAGCATGCGGGCGCTC
* * * * * * *
35850374 AGCCGACCAGAGAGGTAGGATTCGCAAGCCAGGGATCG
65 AGCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCG
35850412 GCCCGGTCTA
Statistics
Matches: 207, Mismatches: 50, Indels: 11
0.77 0.19 0.04
Matches are distributed among these distances:
159 81 0.39
160 126 0.61
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (159 bp):
AAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGAGCATGCGGGCGCTCA
GCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCAGTCCCCTCCTGCGTGCTACCGAT
ACCGCTGCCACAACCATCGGTCCGGCTAG
Found at i:35850506 original size:26 final size:26
Alignment explanation
Indices: 35850470--35850522 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35850460 TTGGTCTGAT
**
35850470 CTTAGACTGGGAATGGGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35850496 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35850522 C
1 C
35850523 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.32, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35851522 original size:38 final size:38
Alignment explanation
Indices: 35851444--35851543 Score: 132
Period size: 38 Copynumber: 2.7 Consensus size: 38
35851434 AGCCGACCGA
*
35851444 AGAGGCATAATGCGCTAGCCGGGG-ATCGGTCGACAGG
1 AGAGGCATAATGCGCAAGCCGGGGAATCGGTCGACAGG
35851481 AGAGGCATAATGCGCAAGCCGGGGAATCGGTCGACCA-G
1 AGAGGCATAATGCGCAAGCCGGGGAATCGGTCGA-CAGG
* * * *
35851519 AGAGGTAGAATGTGCAAGCCAGGGA
1 AGAGGCATAATGCGCAAGCCGGGGA
35851544 TTGGCCTGGT
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
37 23 0.41
38 31 0.55
39 2 0.04
ACGTcount: A:0.29, C:0.20, G:0.39, T:0.12
Consensus pattern (38 bp):
AGAGGCATAATGCGCAAGCCGGGGAATCGGTCGACAGG
Found at i:35852229 original size:26 final size:26
Alignment explanation
Indices: 35852200--35852252 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35852190 CCGGTCTGAT
35852200 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
35852226 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35852252 C
1 C
35852253 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35852928 original size:26 final size:26
Alignment explanation
Indices: 35852890--35852942 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35852880 GGCTCAAAAT
35852890 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35852916 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
35852942 C
1 C
35852943 CTAAACCATC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35853328 original size:159 final size:158
Alignment explanation
Indices: 35852915--35853352 Score: 404
Period size: 159 Copynumber: 2.8 Consensus size: 158
35852905 AACTCCATAT
* * * * *
35852915 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCATCCCATGAAACGAGCGTGCAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCTA
* * * *
35852980 CCAACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCC
* ** * ** *
35853045 TACTATCGTAACCCTCGGTCTGGTTCGA
131 TACTACCACAACCCTCAGTCCAGCTCGA
** * * * * * *
35853073 TATTAGTC-TGGGAATGAAGTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGC
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCT--
* * * * * * *
35853137 GCTA--G-TCGAAGAAGCATATTGCGTAA-CTCGGGGATTGGCCCGATCCCCCTCTTG-GTGCTG
63 -CTACCGACCGAAGAGGCAGAATGCGCAAGC-CGGGGATCGGCCCGATCCCCC-C-TGCGTGCTA
* * * *
35853197 CCGATCCTACTGCCACAACTCTCAGTCCAGCTGGG
124 CCGATCCTACTACCACAACCCTCAGTCCAGCTCGA
* *
35853232 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCTA
* * *
35853297 CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGA-CCCTCCTGCGTGCT
66 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCT
35853353 GTCGGTCTTG
Statistics
Matches: 213, Mismatches: 54, Indels: 27
0.72 0.18 0.09
Matches are distributed among these distances:
156 5 0.02
157 8 0.04
158 87 0.41
159 107 0.50
160 4 0.02
161 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCTA
CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCC
TACTACCACAACCCTCAGTCCAGCTCGA
Found at i:35853426 original size:26 final size:26
Alignment explanation
Indices: 35853390--35853442 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35853380 CCGATCTAAT
*
35853390 CTTAGATTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
35853416 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
35853442 C
1 C
35853443 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:35854422 original size:159 final size:159
Alignment explanation
Indices: 35854045--35854448 Score: 391
Period size: 159 Copynumber: 2.5 Consensus size: 159
35854035 AATCTTTGAT
* * * *
35854045 TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCCTGCAGGAGCTCAGCCGGCCGG
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGAGCTCAGTCGACCGG
* * * * * *
35854110 AGAGGCAAAATGTGCAAGCCGGGGGCCGGCCCGGTCCCCCCCTATGTGCTGTCGATCCTGCTGCC
66 AGAGGCAAAATGCGCAAGCCGGGGACCGGCCCGATCCCCCCCTATGTGCTATCGATCCCGCTACC
* * *
35854175 ACAACCCTCGATCTGGTCTGATCTTAGAC
131 ACAACCCTCGATCTCGACTGAGCTTAGAC
* * * * * * *
35854204 TGGGAATAAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCA-CTGAGTCGACCG
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGG-AGCTCAGTCGACCG
* * ** * * * *
35854268 GAGAGGCATAATGCGTAAGTTGGGGATCGGCCCGATCCCCCTCTGTGTGCTATCGGTCCCGCTAC
65 GAGAGGCAAAATGCGCAAGCCGGGGACCGGCCCGATCCCCCCCTATGTGCTATCGATCCCGCTAC
* * *
35854333 CACAACCCTCGGTC-CGACTAGGGCTTAGGC
130 CACAACCCTCGATCTCGACT-GAGCTTAGAC
* * * * * **
35854363 AT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATACGGGTGCTCAGTCGGTCG
1 -TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGAGCTCAGTCGACCG
* * *
35854427 GAGGGGTAGAATGCGCAAGCCG
65 GAGAGGCAAAATGCGCAAGCCG
35854449 AGGATCAGCT
Statistics
Matches: 191, Mismatches: 50, Indels: 8
0.77 0.20 0.03
Matches are distributed among these distances:
158 3 0.02
159 186 0.97
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (159 bp):
TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGAGCTCAGTCGACCGG
AGAGGCAAAATGCGCAAGCCGGGGACCGGCCCGATCCCCCCCTATGTGCTATCGATCCCGCTACC
ACAACCCTCGATCTCGACTGAGCTTAGAC
Found at i:35854543 original size:26 final size:26
Alignment explanation
Indices: 35854514--35854566 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35854504 CCAGTCTGAT
35854514 CTTAAACTAGGAATGAACTCTGTATG
1 CTTAAACTAGGAATGAACTCTGTATG
* * *
35854540 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAAACTAGGAATGAACTCTGTATG
35854566 C
1 C
35854567 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCTGTATG
Found at i:35855540 original size:316 final size:312
Alignment explanation
Indices: 35854890--35855700 Score: 876
Period size: 316 Copynumber: 2.6 Consensus size: 312
35854880 AACTCTATAT
* * * ** *
35854890 GCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCATGAAATGAGCGTTTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG-G-GTTACGGTGCTCAG
* * * * * *
35854955 TCGATTGGAGAGGCAGAATGCACATGCCGAGGATCGGCCCGGTCCCCCCTGCATGCTATCGATCT
64 CCG-TCGGAGAGGCAGAATGCACATG-CGGGGATCGGCCAGGCCCCCCCTGCATGCTATCGATCC
* ** * * ** * *
35855020 TACTACTGCAACCCTTGGTCTAGTTCGATCTTAGACTGGGAATGAACTTTGTCTGCTTAAGTCAA
127 TGCTACTGCAACCCTCAGTCTGGTT-GATCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * *
35855085 CCCACGAAACGAGCATGCGGGCATTGAGCCGATCGGAGAGGCATAATGCATAAGCTGAGGATCGA
191 CCCACGAAACGAACATGCAGGCACTGAGCCGATCGGAGAGGCATAATGCACAAGCAGAGGACCGA
* *
35855150 CTCAGTCCCCCTCTACGTGCTGCCGGTCCCGCTACCACAACCATCGATCCGGCTGGG
256 CCCAGTCCCCCTCTACGTGCTGCCGGTCCCGCTACCACAACCATCGATCCGACTGGG
* * *
35855207 GTTTAGACATTGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTACGATGCTCAGC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGT-TACGGTGCTCAGC
** * *
35855272 CAGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCTGGCCCCCCCTGCATGCTATCGATCCT
65 C-GTCGGAGAGGCAGAATGCACATG-CGGGGATCGGCCAGGCCCCCCCTGCATGCTATCGATCCT
* * *
35855337 GCTGCTACAACCCTCAGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAAC
128 GCTACTGCAACCCTCAGTCTGGT-TGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
35855402 CCACGAAATGAACGTGTAGGCGCTGAGCTGGTCGGAGAGGCATAATGCACAAGCCAG-GGACCGA
192 CCACGAAACGAACATGCAGGCACTGAGCCGATCGGAGAGGCATAATGCACAAG-CAGAGGACCGA
* * * * * * *
35855466 CCCGGTCCCCCTCTTCTTGCTGTCGGTCCCGCTGCCACAACCCTC-AGTTCGACTGGG
256 CCCAGTCCCCCTCTACGTGCTGCCGGTCCCGCTACCACAACCATCGA-TCCGACTGGG
* * *
35855523 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATACGGGTGCTGAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGG-TTAC-GGTGCTCAG
* *
35855588 CCGGTCGGAGAGGTAGAATGCACATGCTGGGGATCGGCTCAGTCCCCCCTCTG--TGCTATCGAT
64 CC-GTCGGAGAGGCAGAATGCACATGC-GGGGATCGGC-CAGGCCCCCC-CTGCATGCTATCGAT
* * *
35855651 CCTGCTATTGCAAACCTCAGTCCGGTTTGATCTTAGACAT-GGAATGAACT
125 CCTGCTACTGCAACCCTCAGTCTGG-TTGATCTTAGA-ATGGGAATGAACT
35855701 TCGCCAACCC
Statistics
Matches: 412, Mismatches: 70, Indels: 24
0.81 0.14 0.05
Matches are distributed among these distances:
315 3 0.01
316 262 0.64
317 134 0.33
318 10 0.02
319 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (312 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTTACGGTGCTCAGCC
GTCGGAGAGGCAGAATGCACATGCGGGGATCGGCCAGGCCCCCCCTGCATGCTATCGATCCTGCT
ACTGCAACCCTCAGTCTGGTTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAACATGCAGGCACTGAGCCGATCGGAGAGGCATAATGCACAAGCAGAGGACCGACCCAG
TCCCCCTCTACGTGCTGCCGGTCCCGCTACCACAACCATCGATCCGACTGGG
Found at i:35855633 original size:159 final size:158
Alignment explanation
Indices: 35855109--35855635 Score: 490
Period size: 159 Copynumber: 3.3 Consensus size: 158
35855099 ATGCGGGCAT
* * * * * *
35855109 TGAGCCGATCGGAGAGGCATAATGCATAAGCTGAGGATCGACTCAGTCCCCCTCTACGTGCTGCC
1 TGAGCCGGTCGGAGAGGCAGAATGCACAAGCTGGGGATCGACTCAGTCCCCCTCTACATGCTGTC
* * * * * *
35855174 GGTCCCGCTACCACAACCATC-GATCCGGCTGGGGTTTAGACATTGAATGAACTCCCTATGCCTA
66 GGTCCCGCTGCCACAACCCTCAG-TTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
* *
35855238 AGCCAACCCACGAAATGGGTGTACGATGC
130 AGCCAACCCACGAAATGGGCGTACGGTGC
* * ** * * * * * *
35855267 TCAGCCAGTCGGAGAGGCAGAATGCGTAAG-TCGGGGATCGGC-CTGGCCCCCCCTGCATGCTAT
1 TGAGCCGGTCGGAGAGGCAGAATGCACAAGCT-GGGGATCGACTCAGTCCCCCTCTACATGCTGT
* * * * * ** * *
35855330 CGATCCTGCTGCTACAACCCTCAGTCTGGTCT-GATCTTAGA-TTGGGAATGAACTCCGTATGCC
65 CGGTCCCGCTGCCACAACCCTCAGT-TCGACTGGGGCTTAGACAT-GGAATGAACTCCCTATGCC
* * * *
35855393 TAAGTCAACCCACGAAATGAACGTGTA-GGCGC
128 TAAGCCAACCCACGAAATG--GGCGTACGGTGC
* * ** * * * * *
35855425 TGAGCTGGTCGGAGAGGCATAATGCACAAGCCAGGGACCGACCCGGTCCCCCTCTTCTTGCTGTC
1 TGAGCCGGTCGGAGAGGCAGAATGCACAAGCTGGGGATCGACTCAGTCCCCCTCTACATGCTGTC
35855490 GGTCCCGCTGCCACAACCCTCAGTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
66 GGTCCCGCTGCCACAACCCTCAGTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
*
35855555 GCCAACCCACGAAATGGGCATACGGGTGC
131 GCCAACCCACGAAATGGGCGTAC-GGTGC
* * * *
35855584 TGAACCGGTCGGAGAGGTAGAATGCACATGCTGGGGATCGGCTCAGTCCCCC
1 TGAGCCGGTCGGAGAGGCAGAATGCACAAGCTGGGGATCGACTCAGTCCCCC
35855636 CTCTGTGCTA
Statistics
Matches: 284, Mismatches: 73, Indels: 23
0.75 0.19 0.06
Matches are distributed among these distances:
156 1 0.00
157 77 0.27
158 75 0.26
159 130 0.46
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
TGAGCCGGTCGGAGAGGCAGAATGCACAAGCTGGGGATCGACTCAGTCCCCCTCTACATGCTGTC
GGTCCCGCTGCCACAACCCTCAGTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
GCCAACCCACGAAATGGGCGTACGGTGC
Found at i:35855847 original size:149 final size:148
Alignment explanation
Indices: 35855555--35855849 Score: 333
Period size: 148 Copynumber: 2.0 Consensus size: 148
35855545 CTATGCCTAA
* * * * * * *
35855555 GCCAACCCACGAAATGGGCATACGGGTGCTGAACCGGTCGGAGAGGTAGAATGCACATGCTGGGG
1 GCCAACCCACGAAACGAGCATACGGGTGCTCAACCGATCGGAGAGGCAGAATGCACAAGCTAGGG
* ** * **
35855620 ATCGGCTCAGTCCCCCCTCTGTGCTATCGATCCTGCTATTGCAAACCTCAGTCCGGTTTGATCTT
66 ATCGGCCCAGTCCCCCCTCTGTGCTATCGATCCTGCTACCGCAAACCTCAATCCGGTCCGATCTT
35855685 AGACATGGAATGAACTTC
131 AGACATGGAATGAACTTC
* * * * *
35855703 GCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGTTAGGG
1 GCCAACCCACGAAACGAGCATACGGGTGCTCAACCGATCGGAGAGGCAGAATGCACAAGCTAGGG
* * * * * *
35855768 ATCGGCCCGGTCACCCCCTAC-GTGCTGTTGGTCCTGCTGCCGCAACCCTCAATCCGGTCCGATC
66 ATCGGCCCAGTC-CCCCCT-CTGTGCTATCGATCCTGCTACCGCAAACCTCAATCCGGTCCGATC
35855832 TTAGAC-TGGGAATGAACT
129 TTAGACAT-GGAATGAACT
35855850 CCGTATGCTT
Statistics
Matches: 120, Mismatches: 24, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
148 64 0.53
149 55 0.46
150 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (148 bp):
GCCAACCCACGAAACGAGCATACGGGTGCTCAACCGATCGGAGAGGCAGAATGCACAAGCTAGGG
ATCGGCCCAGTCCCCCCTCTGTGCTATCGATCCTGCTACCGCAAACCTCAATCCGGTCCGATCTT
AGACATGGAATGAACTTC
Found at i:35855860 original size:26 final size:26
Alignment explanation
Indices: 35855831--35855883 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35855821 CCGGTCCGAT
35855831 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35855857 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35855883 C
1 C
35855884 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35857087 original size:491 final size:493
Alignment explanation
Indices: 35856301--35857399 Score: 1221
Period size: 490 Copynumber: 2.2 Consensus size: 493
35856291 GCTACTGGTT
* * * * * ** * * * *
35856301 CTACTGTCGTAACCCTCGATTTGGTCCGATCTTAGACTGGGAATGAACTTCATATACTTAGAC-A
1 CTACTGCCGCAACCCTCGATCTAGTCCAATCTTAGACTAAGAATGAAATCCGTATGCTTAGACTA
* * * * * * *** **
35856365 TGGAATGAACTTCGTATGCATAAGCCAACCCATGAAACGACCGTGCGGGTGTTCAACCGGT-TGG
66 -GGGATGAAC-TCCTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACC-GTCCAG
* * * * * * * * * * * *
35856429 AGAGGCAGAATGCGCAAGTCAAAGACCAACCCGATCCC-CCTACGTGCTGTCAAACCTACTACCG
128 AGAGGCAGAATACGCAAGTCGAGGATCAGCCAGCTCCCTCCTGCATGCTATCGATCCTACTACCG
* * ** *
35856493 TAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
193 CAACCCTCGATCCGATCTGATCTTAGAAGAGGAATGAACTCCGTATGCATAAGTCAACCCACGAA
* * * *
35856558 ACGAGCATACGGAAGCTGAGCTAACCGGAGAGGCATAATACGCAAG-CAGGGGATCGGCCCGGTC
258 ACGAGCATACGGAAGCTGAGCTAACCGAAGAGGCATAATACACAAGTC-GGGGACCGGCCCGATC
* * *
35856622 CCCTTCTACGAGCTACC-GATCCCGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAA
322 CCC-TCTACGAGCTACCAG-TCCCACTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAA
*
35856686 TGAACTCCCTATGCCTAAGGCAACCCACGAAACGAGCGTGCGGGCA-CA-GA-GAGA-TAAAATA
385 TGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACCACGACGAGAGTAAAATA
* * **
35856747 CGCAAGCCAGGGATCGGC-CTGGTCCCCCCTGCGTTTTGCCGATC
450 CACAAGCCAGGGATCGGCTC-GATCCCCCCTGCGTGCTGCCGATC
* * * *
35856791 CTACTGTCGCAACCCTTGGT-TCAGTCCAATCTTAGACTAAGAATGAAATCCGTATGCTTAGATT
1 CTACTGCCGCAACCCTCGATCT-AGTCCAATCTTAGACTAAGAATGAAATCCGTATGCTTAGACT
*
35856855 AGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAACCGTCCAGA
65 AGGGATGAACTCC-TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACCGTCCAGA
35856920 GAGGCAGAATACGCAAGTCGAGGATCAGCCAGCTCCCTCCTGCATGCTATCGATCCTACTACCGC
129 GAGGCAGAATACGCAAGTCGAGGATCAGCCAGCTCCCTCCTGCATGCTATCGATCCTACTACCGC
* *
35856985 AACCCTCGATCCGATCTGATCTTAGAAGGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAA
194 AACCCTCGATCCGATCTGATCTTAGAAGAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAA
* * ** * **
35857050 GGAGCATGCGGGTGCTGAGCTGACCGAAGAGGCATAATGTACAAGTCGGGGACCGGCCCGATCCC
259 CGAGCATACGGAAGCTGAGCTAACCGAAGAGGCATAATACACAAGTCGGGGACCGGCCCGATCCC
* * *
35857115 CTCTACGTGCTGCCAGTCCTACTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAA
324 CTCTACGAGCTACCAGTCCCACTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAA
* *
35857180 CTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAGCCGACTGGAGAGGTAGAA
389 CTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCAC-CA--CGAC--GAGA-GTAAAA
* * * *
35857245 TGCACAAGTCGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATC
448 TACACAAGCCAGGGATCGGCTCGATCCCCCCTGCGTGCTGCCGATC
* * * * * * * * *
35857291 CTGCTGCCGCAACCCTCGATCTGGTTCGATTTTAGACTAGGAATGAACTCCTTATGCTTAGACTG
1 CTACTGCCGCAACCCTCGATCTAGTCCAATCTTAGACTAAGAATGAAATCCGTATGCTTAGACTA
* *
35857356 GGGATGAACTCCTATGCCTAAGTCAACCTACGAAACGAGTGTGC
66 GGGATGAACTCCTATGCCTAAGTCAACCCACGAAACGAGCGTGC
35857400 TGGCGCTTAG
Statistics
Matches: 503, Mismatches: 87, Indels: 29
0.81 0.14 0.05
Matches are distributed among these distances:
489 5 0.01
490 221 0.44
491 135 0.27
492 3 0.01
495 2 0.00
498 4 0.01
499 29 0.06
500 102 0.20
501 2 0.00
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (493 bp):
CTACTGCCGCAACCCTCGATCTAGTCCAATCTTAGACTAAGAATGAAATCCGTATGCTTAGACTA
GGGATGAACTCCTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACCGTCCAGAGA
GGCAGAATACGCAAGTCGAGGATCAGCCAGCTCCCTCCTGCATGCTATCGATCCTACTACCGCAA
CCCTCGATCCGATCTGATCTTAGAAGAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACG
AGCATACGGAAGCTGAGCTAACCGAAGAGGCATAATACACAAGTCGGGGACCGGCCCGATCCCCT
CTACGAGCTACCAGTCCCACTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACT
CCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACCACGACGAGAGTAAAATACACAAG
CCAGGGATCGGCTCGATCCCCCCTGCGTGCTGCCGATC
Found at i:35857326 original size:158 final size:156
Alignment explanation
Indices: 35856859--35857347 Score: 462
Period size: 158 Copynumber: 3.1 Consensus size: 156
35856849 TAGATTAGGG
* * * *
35856859 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAACCGTCCAGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGGAGAGG
* * * * * * * * *
35856924 CAGAATACGCAAGTCGAGGATCAGCCAGCTCCCTCCTGCATGCTATCGATCCTACTACCGCAACC
66 CAGAATGCACAAGTCGGGGATCGGCC-GATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACC
* *
35856989 CTCGATCCGATCTGATCTTAGA-AGGGGA
130 CTCGATCAGATC-GATCTTAGACA-TGGA
* * * * ** * * *
35857017 ATGAACTCTGTATGCATAAGTCAACCCACGAAAGGAGCATGCGGGTGCTGAGCTGACCGAAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGGAGAGG
* * * * * * *
35857082 CATAATGTACAAGTCGGGGACCGGCCCGATCCCCTCTACGTGCTG-CCAGTCCTACTGCCACAAC
66 CAGAATGCACAAGTCGGGGATCGG-CCGATCCCCCCTGCGTGCTGTCGA-TCCTACTGCCGCAAC
* * * **
35857146 CCTCGGTCCAGCTGGGGCTTAGACATGGA
129 CCTCGAT-CAGATCGATCTTAGACATGGA
* * * *
35857175 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAGCCGACTGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGGAGAGG
* *
35857240 TAGAATGCACAAGTCGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACC
66 CAGAATGCACAAGTCGGGGATCGGC-CGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACC
* * *
35857305 CTCGATCTGGTTCGATTTTAGAC-TAGGA
130 CTCGATC-AGATCGATCTTAGACAT-GGA
*
35857333 ATGAACTCCTTATGC
1 ATGAACTCCGTATGC
35857348 TTAGACTGGG
Statistics
Matches: 258, Mismatches: 65, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
157 5 0.02
158 245 0.95
159 8 0.03
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (156 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGGAGAGG
CAGAATGCACAAGTCGGGGATCGGCCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCC
TCGATCAGATCGATCTTAGACATGGA
Found at i:35857362 original size:26 final size:25
Alignment explanation
Indices: 35857322--35857372 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
35857312 TGGTTCGATT
35857322 TTAGACTAGGAATGAACTCCTTATGC
1 TTAGACTAGGAATGAACTCC-TATGC
* *
35857348 TTAGACTGGGGATGAACTCCTATGC
1 TTAGACTAGGAATGAACTCCTATGC
35857373 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (25 bp):
TTAGACTAGGAATGAACTCCTATGC
Found at i:35858813 original size:864 final size:867
Alignment explanation
Indices: 35856964--35859178 Score: 2337
Period size: 864 Copynumber: 2.6 Consensus size: 867
35856954 CCCTCCTGCA
* * **
35856964 TGCTATCGATCCTACTACCGCAACCCTCGATCCGATCTGATCTTAGAAGGGGAATGAAC-TCTGT
1 TGCTATCGATCCTGCTACCGCAACCCTCGATCCAATCTGATCTTAGACTGGGAATGAACTTC-GT
* * * * *
35857028 ATGCATAAGTCAACCCACGAAAGGAGCATGCGGGTGCTGAGCTGACCGAAGAGGCATAATGTACA
65 ATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGCTGACTGAAGAGGCATAATGCACA
* * * * * *
35857093 AGTCGGGGACCGGCC-CGATCCCCTCTACGTGCTGCCAG-TCCTACTGCCACAACCCTCGGTCCA
130 AGCCGGGGAACGGCCTAG-TCCCCTCTGCGTGCTG-TAGATCCCACTGCCACAACCCTCGGTCCA
* *
35857156 GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGC
193 GCTGGGGCTTAGACAT-G-ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGC
* * * *
35857221 ACTCAGCCGACTGGAGAGGTAGAATGCACAAGTCGGGGATCG-GCTCGATCCCCCCTGCGTGCTG
256 ACTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCTCGATCCCCCCTGCGTGCTG
* * *
35857285 TCGATCCTGCTGCCGCAACCCTCGATCTGGT-TCGATTTTAGACTAGGAATGAACTCCT-TATGC
321 TCGATCCTGCTGCCGCAACCTTCGATCCGGTCT-GATCTTAGACTAGGAATGAACT-CTGTATGC
* *
35857348 TTAGACTGGGGATGAACTCC-TATGCCTAAGTCAACCTACGAAACGAGTGTGCTGGCGCTTAGCT
384 TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GG-GC---G-T
* ** *
35857412 AGTCGGAGAGGTCGGCCGAAGAGGCATAATGCATAAGCCGAGGATCAGCCCGATCGCCCTCTGCA
443 --TC--A-A--TCGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCGCCCTCTACA
** * *
35857477 TGCTGTCGATCTCGCTGCTGGTCCTGCTGCCATAACCATCGATTCGGCTGGGGCTTAGACATGGA
501 TGCTACCGATCCCGCTGCTGGTCCTGCTGCCATAACCATCGATTCGACTGGGGCTTAGACATGGA
* * * *
35857542 ATGAACTCTGTTTGCCTAAGCCAACCCATGAAATGAGCGTGCGAGTGCTCAACCGGCCAAAGAGG
566 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGTGCTCAACCAGCCAAAGAGG
* * * * *
35857607 CAGAATGCGTAAGCCAGGGATCGACCCGGTCCCCCCTTGCGTGCTGTCGATCTTGCTGCTGGTCC
631 CAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCCTGCGTGCTGTCAATCCTACTGCTGGTCC
* * * *
35857672 TACTACCATAACGCTCGGTCCGATCCGATCCTAGACTGGGAATGAACTCCGTACGCTTAGACATG
696 TACTACCATAACGCTAGGTCAGATCCAATCCTAGACTGGGAATGAACTCCATACGCTTAGACATG
* ** * ** ** * *
35857737 GAATAAACTCCTTATGCCTAAGCCAACCAATGAAACGAGGGTACAGACGTTCAGCAGGTCGGAGA
761 GAATAAACTCATTACACCTAAGCCAACCAATAAAACGAGCATACAGACACTCAGCAGGCCGAAGA
* * *
35857802 GGCAGAATGAGCAAGTTGGGGATTGGCTCGATCCCCCCTACG
826 GGCAGAATGAGCAAGTAGGGGATCGGCTCGATACCCCCTACG
* * * *
35857844 TGCTATCGATCCTGCTACCGCAA-CCTCCAGTCCAGT-TCGATCTTAGACTAGGAATGAACTTTG
1 TGCTATCGATCCTGCTACCGCAACCCTCGA-TCCAATCT-GATCTTAGACTGGGAATGAACTTCG
*
35857907 TATGCATAAGTCAACCCATGAAACGAGCGTACGGGTGCTGAGCTGACTGAAGAGGCATAATGCAC
64 TATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGCTGACTGAAGAGGCATAATGCAC
*
35857972 AAGCCGGGGAACGGCCTAGTCCCCCTCTGCGTGCTGTTGATCCCACTGCCACAACCCTCGGTCCA
129 AAGCCGGGGAACGGCCTAGT-CCCCTCTGCGTGCTGTAGATCCCACTGCCACAACCCTCGGTCCA
* * * **
35858037 ACTGGGGCTTAGACAT-ATGAACTCACTATGCCTAAGCCAACCCACGGAACGGGCGTGCGGGCGT
193 GCTGGGGCTTAGACATGATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCAC
* * * **
35858101 TCAGCCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCTTG-TCCCCCCTGCGTGCCATC
258 TCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCTCGATCCCCCCTGCGTGCTGTC
* ** *
35858165 GATCCTGGTATCGCAACCTTCGATCCGGTCTTATCTTAGACT-GGAATGAACTCTGTATGCTTAG
323 GATCCTGCTGCCGCAACCTTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAG
* * * *
35858229 ACTGGGGATGAACTCCGTAGGCCTATGTCAACCCATGAAACGAGCGTGCGGGCGTTCAATCGGCT
388 ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAATCGGCC
* * * *
35858294 GGAGAGGCATAATGCGCAAGCCGTGGATCAGCCTGGTTC-CCCTCTACATGCTACCGATCCCGTT
453 GGAGAGGCATAATGCGCAAGCCGAGGATCAGCC-CGATCGCCCTCTACATGCTACCGATCCCGCT
* * *
35858358 GTTGGTCCTGTTGCCATAA-CACTCG-GTCTGACTGGGGCTTAGACATGGAATGAACTCCGTATG
517 GCTGGTCCTGCTGCCATAACCA-TCGATTC-GACTGGGGCTTAGACATGGAATGAACTCCGTATG
* * **** *
35858421 CCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCAACCAGTTGGAGAGGTAGAATGCGCAAGC
580 CCTAAGCCAACCCATGAAACGAGCGTGCGAGTGCTCAACCAGCCAAAGAGGCAGAATGCGCAAGC
* * * * * *
35858486 CGGGGATC-AGCC-TTGCCCCCCCTGCGTGTTGTTAATCCTACTGCTGGTCCTACTGTCGCA-AA
645 CAGGGATCGACCCGGT-CCCCCCCTGCGTGCTGTCAATCCTACTGCTGGTCCTACT-AC-CATAA
* * * * *
35858548 C-CTAGGTGCAG-TCTAATCTTAGATTGGGAATGAACTCCATATGCTTAGACATGGAATGAACT-
707 CGCTAGGT-CAGATCCAATCCTAGACTGGGAATGAACTCCATACGCTTAGACATGGAATAAACTC
* * * *
35858610 ATGTACACCTAAGGCAACCCATAAAACGAGCATGCAGCCACTCAGCAGGCCGAAGAGGCAGAAT-
771 AT-TACACCTAAGCCAACCAATAAAACGAGCATACAGACACTCAGCAGGCCGAAGAGGCAGAATG
* *
35858674 A-CAGATGTAGGGGATCGGC-CTGGTACCCCCTATG
835 AGCA-A-GTAGGGGATCGGCTC-GATACCCCCTACG
* * * * * *
35858708 TGCTATCAATCCTGCTGCCCCAACCCTCGATCCAATCTGATCATAGCCTGGGAATGAACTTCGTT
1 TGCTATCGATCCTGCTACCGCAACCCTCGATCCAATCTGATCTTAGACTGGGAATGAACTTCGTA
* * * * * *
35858773 TGCCTAACTCAACCCATGAAATGAGCGTGCGGGCGCTGAGCCGA-TCGGAGAGGCATAATGCACA
66 TGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGCTGACT-GAAGAGGCATAATGCACA
* * * * * ** * * **
35858837 AGCCAGGGATC-GACTA-----C-GTGC-TAC--TAG-TCCCGTTGCCACAACACTCGATCTGGC
130 AGCCGGGGAACGGCCTAGTCCCCTCTGCGTGCTGTAGATCCCACTGCCACAACCCTCGGTCCAGC
* *
35858891 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCAC
195 TGGGGCTTAGACAT-G-ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCAC
* ** * * **
35858956 TCAGACGGTCGAAGAGGTAGAATGCGCAAGCCGAGGATCGACC-CGATCCATCCTGCGTGCTGTC
258 TCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCTCGATCCCCCCTGCGTGCTGTC
* * * * * * *
35859020 CATCCTGCTGCCGTAACCCTT-GGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
323 GATCCTGCTGCCGCAA-CCTTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCTTA
* * * * * * *
35859084 GACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCATGCAGGCGCTCAACCGAC
387 GACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAATCGGC
* ** *
35859149 CAGAGAGGCAGGATGCGCAAGCCGGGGATC
452 CGGAGAGGCATAATGCGCAAGCCGAGGATC
35859179 GAACGGGTGG
Statistics
Matches: 1117, Mismatches: 188, Indels: 84
0.80 0.14 0.06
Matches are distributed among these distances:
852 34 0.03
853 2 0.00
854 1 0.00
855 122 0.11
856 107 0.10
857 1 0.00
862 2 0.00
863 10 0.01
864 269 0.24
865 179 0.16
866 5 0.00
867 1 0.00
868 1 0.00
870 2 0.00
872 1 0.00
873 1 0.00
876 4 0.00
877 37 0.03
878 153 0.14
879 10 0.01
880 120 0.11
881 55 0.05
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (867 bp):
TGCTATCGATCCTGCTACCGCAACCCTCGATCCAATCTGATCTTAGACTGGGAATGAACTTCGTA
TGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGCTGACTGAAGAGGCATAATGCACAA
GCCGGGGAACGGCCTAGTCCCCTCTGCGTGCTGTAGATCCCACTGCCACAACCCTCGGTCCAGCT
GGGGCTTAGACATGATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCA
GCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCTCGATCCCCCCTGCGTGCTGTCGAT
CCTGCTGCCGCAACCTTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACT
GGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAATCGGCCGGA
GAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCGCCCTCTACATGCTACCGATCCCGCTGCTG
GTCCTGCTGCCATAACCATCGATTCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
CCAACCCATGAAACGAGCGTGCGAGTGCTCAACCAGCCAAAGAGGCAGAATGCGCAAGCCAGGGA
TCGACCCGGTCCCCCCCTGCGTGCTGTCAATCCTACTGCTGGTCCTACTACCATAACGCTAGGTC
AGATCCAATCCTAGACTGGGAATGAACTCCATACGCTTAGACATGGAATAAACTCATTACACCTA
AGCCAACCAATAAAACGAGCATACAGACACTCAGCAGGCCGAAGAGGCAGAATGAGCAAGTAGGG
GATCGGCTCGATACCCCCTACG
Found at i:35859083 original size:26 final size:26
Alignment explanation
Indices: 35859054--35859106 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35859044 CCGATCCGAT
35859054 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
35859080 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35859106 C
1 C
35859107 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35859350 original size:26 final size:26
Alignment explanation
Indices: 35859316--35859365 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
35859306 TTTTCTATTT
* *
35859316 TTCATGATTTTTGAAACTTTTTTTGG
1 TTCAGGATTTTTGAAAATTTTTTTGG
*
35859342 TTCAGGATTTTTTAAAATTTTTTT
1 TTCAGGATTTTTGAAAATTTTTTT
35859366 AGAAAGAGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.22, C:0.06, G:0.12, T:0.60
Consensus pattern (26 bp):
TTCAGGATTTTTGAAAATTTTTTTGG
Found at i:35859826 original size:26 final size:26
Alignment explanation
Indices: 35859775--35859827 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
35859765 GGCTCAAAAT
* *
35859775 CTTAGACTGGGAGTGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35859801 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
35859827 C
1 C
35859828 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35860520 original size:26 final size:26
Alignment explanation
Indices: 35860491--35860543 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35860481 CTGGTTTGAT
*
35860491 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
35860517 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
35860543 C
1 C
35860544 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:35861727 original size:26 final size:26
Alignment explanation
Indices: 35861689--35861741 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35861679 GGCTCAAAAT
35861689 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35861715 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
35861741 C
1 C
35861742 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35862116 original size:159 final size:158
Alignment explanation
Indices: 35861714--35862162 Score: 447
Period size: 159 Copynumber: 2.8 Consensus size: 158
35861704 AACTCCATAT
* * * * *
35861714 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGGGCTCAA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
35861779 CCGGTCGGAGAGGTAGAATGCGCAAACCGGGGATC-GACCCGATCCCCCCTACGTGCTGTCAATC
66 CCGGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCAG-CCCGATCCCCCCTGCGTGCTGCCAATC
* *
35861843 CTGCTACTACAACCCTCAGTCCATTCTGA
130 CTGCTACCACAACCCTCAGTCCATTCGGA
** * * * * * * *
35861872 TATTAGACTAGGAATGAACTTCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTGAG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
35861937 TCGGTCGAAGAAGCATAATGCGCAAGCTAGGGATCAGCCCGGTCCCCCTCTGTGTGCTGCCAGTC
66 CCGGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGATCCCCC-CTGCGTGCTGCCAATC
* * *
35862002 GC-GCTGCCATAACCCTCAGTCCGATT-GGG
130 -CTGCTACCACAACCCTCAGTCC-ATTCGGA
* * * *
35862031 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGTGGGCGCTCAG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * *
35862096 CCAATCAAAGAGGCAGAATGCGTAAG-TCGGGGATCAGCCCGATCCCTCCTGCGTGCTGCCGATC
66 CCGGTCGAAGAGGCAGAATGCGCAAGCT-GGGGATCAGCCCGATCCCCCCTGCGTGCTGCCAATC
35862160 CTG
130 CTG
35862163 TTGCTGCAAC
Statistics
Matches: 227, Mismatches: 58, Indels: 12
0.76 0.20 0.04
Matches are distributed among these distances:
157 1 0.00
158 103 0.45
159 119 0.52
160 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGATCCCCCCTGCGTGCTGCCAATCC
TGCTACCACAACCCTCAGTCCATTCGGA
Found at i:35862241 original size:26 final size:26
Alignment explanation
Indices: 35862190--35862242 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35862180 CCAGTCCAAT
* *
35862190 CTTAGACTGGGAATGAACTTCTTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35862216 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
35862242 C
1 C
35862243 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35862658 original size:159 final size:158
Alignment explanation
Indices: 35862362--35862668 Score: 377
Period size: 159 Copynumber: 1.9 Consensus size: 158
35862352 GCTGGTCCTG
* * * *
35862362 CTGCCACAACCCTTGGTCCGACTGGGGCTTAGATATGGAATGAACTCCGTATGCCTAAGTCAACC
1 CTGCCACAACCCTTGGTCCGACTGGGGCTTAGACATAGAATGAACTCCATATGCCTAAGTCAACA
* ** * * *
35862427 CACAAAACGAATGTGTGGGTGCTCAGCCGATCGGAGAGGCAGAATACGTAAACCGAGGATTGGCC
66 CACAAAACGAATATGTGGGCACTCAGCCGACCGGAGAGACAGAATACGTAAACCGAGGATCGGCC
* *
35862492 TGATCCCCCTCTGCGTGCTGCCGGTCCCA
131 CGATCCCCC-CTACGTGCTGCCGGTCCCA
*
35862521 CTGCCACAA-CCTTCGGTCTGACTGGGGCTTAGACATAGAATGAACTCCATATGCCTAAG-CGAA
1 CTGCCACAACCCTT-GGTCCGACTGGGGCTTAGACATAGAATGAACTCCATATGCCTAAGTC-AA
* * * * * *
35862584 CATACGAAACGAGA-ATGTGGGCACTCAGTCGACCGGAGAGATAGAATACGTAAGCCGGGGATCG
64 CACACAAAACGA-ATATGTGGGCACTCAGCCGACCGGAGAGACAGAATACGTAAACCGAGGATCG
*
35862648 GCCCGGTCCCCCCTACGTGCT
128 GCCCGATCCCCCCTACGTGCT
35862669 ACCGATCCTG
Statistics
Matches: 125, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
158 13 0.10
159 111 0.89
160 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.19
Consensus pattern (158 bp):
CTGCCACAACCCTTGGTCCGACTGGGGCTTAGACATAGAATGAACTCCATATGCCTAAGTCAACA
CACAAAACGAATATGTGGGCACTCAGCCGACCGGAGAGACAGAATACGTAAACCGAGGATCGGCC
CGATCCCCCCTACGTGCTGCCGGTCCCA
Found at i:35862756 original size:26 final size:26
Alignment explanation
Indices: 35862706--35862758 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35862696 TTGATCTGAT
**
35862706 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
35862732 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
35862758 C
1 C
35862759 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:35863376 original size:26 final size:26
Alignment explanation
Indices: 35863338--35863390 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35863328 GGCTCAGAAT
35863338 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35863364 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
35863390 C
1 C
35863391 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35863800 original size:158 final size:156
Alignment explanation
Indices: 35863363--35863807 Score: 421
Period size: 157 Copynumber: 2.8 Consensus size: 156
35863353 AACTCCATAT
* *
35863363 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTACGGACGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTTCGGGCGCTCAG
* * * * * ** * *
35863428 CCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATTGACCTGATCCCCCCTGCGTGATGTCGATCC
66 -CTGTCGGAGAGGCAGAATGCACAAGCCGGGGATTGGCTTGGTCCCCCCTATGTGCTGCCGATCC
* *
35863493 TACTACTACAACCCTCAGTCTGGTCTG
130 CACTACCACAACCCTCAGTCTGGTCTG
** * * * * * * * ** *
35863520 ATTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCATCCCATGAAACGAGCGTTTGGGAACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTTCGGGCGCTCA
* * * * * * * *
35863584 GCTGGCCGAGAGGCATAATGCACAAGCCGAGGATTGGCTCGGT-CCCACTCTGCATGCTGCCGGT
65 GCTGTCGGAGAGGCAGAATGCACAAGCCGGGGATTGGCTTGGTCCCCCCTATG--TGCTGCCGAT
** *
35863648 CCCGTTGCCACAACCCTCCA-TCTGG-CTGGG
128 CCCACTACCACAACCCT-CAGTCTGGTCT--G
* *
35863678 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATTCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTTCGGGCGCTCAG
* * *
35863743 CTGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTTGGTCCCCCCTATGTGCTGTCGATCC
66 CTG-TCGGAGAGGCAGAATGCACAAGCCGGGGATTGGCTTGGTCCCCCCTATGTGCTGCCGATCC
35863808 TACTGTCGCA
Statistics
Matches: 219, Mismatches: 60, Indels: 17
0.74 0.20 0.06
Matches are distributed among these distances:
155 6 0.03
156 35 0.16
157 73 0.33
158 65 0.30
159 33 0.15
160 7 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTTCGGGCGCTCAG
CTGTCGGAGAGGCAGAATGCACAAGCCGGGGATTGGCTTGGTCCCCCCTATGTGCTGCCGATCCC
ACTACCACAACCCTCAGTCTGGTCTG
Found at i:35863820 original size:158 final size:156
Alignment explanation
Indices: 35863363--35863863 Score: 440
Period size: 158 Copynumber: 3.2 Consensus size: 156
35863353 AACTCCATAT
* *
35863363 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTACGGACGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTTCGGGCGCTCAG
* * * * * ** *
35863428 CCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATTGACCTGATCCCCCCTGCGTGATGTCGATCC
66 -CTGTCGGAGAGGCAGAATGCACAAGCCGGGGATTGGCTTGGTCCCCCCTATGTGCTGTCGATCC
35863493 TACT-ACTACAACCCT-CAGTCTGGTCTG
130 TACTGAC-ACAACCCTCCA-TCTGGTCTG
** * * * * * * * ** *
35863520 ATTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCATCCCATGAAACGAGCGTTTGGGAACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTTCGGGCGCTCA
* * * * * * * * *
35863584 GCTGGCCGAGAGGCATAATGCACAAGCCGAGGATTGGCTCGGT-CCCACTCTGCATGCTGCCGGT
65 GCTGTCGGAGAGGCAGAATGCACAAGCCGGGGATTGGCTTGGTCCCCCCTATG--TGCTGTCGAT
*** *
35863648 CCCGTTGCCACAACCCTCCATCTGG-CTGGG
128 CCTACTGACACAACCCTCCATCTGGTCT--G
* *
35863678 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATTCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTTCGGGCGCTCAG
* *
35863743 CTGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTTGGTCCCCCCTATGTGCTGTCGATCC
66 CTG-TCGGAGAGGCAGAATGCACAAGCCGGGGATTGGCTTGGTCCCCCCTATGTGCTGTCGATCC
* * * *
35863808 TACTGTCGCAACCCTCGATCTGAG-CCG
130 TACTGACACAACCCTCCATCTG-GTCTG
* *
35863835 ATCTTAGAC-TGGGAATGAACTCTGTATGC
1 -GCTTAGACAT-GGAATGAACTCCGTATGC
35863864 TTAGACTGGG
Statistics
Matches: 262, Mismatches: 69, Indels: 25
0.74 0.19 0.07
Matches are distributed among these distances:
155 6 0.02
156 35 0.13
157 74 0.28
158 105 0.40
159 35 0.13
160 7 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTTCGGGCGCTCAG
CTGTCGGAGAGGCAGAATGCACAAGCCGGGGATTGGCTTGGTCCCCCCTATGTGCTGTCGATCCT
ACTGACACAACCCTCCATCTGGTCTG
Found at i:35863866 original size:26 final size:26
Alignment explanation
Indices: 35863837--35863889 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35863827 CTGAGCCGAT
*
35863837 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35863863 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35863889 C
1 C
35863890 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35865295 original size:26 final size:26
Alignment explanation
Indices: 35865257--35865309 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35865247 GGCTCAAAAT
35865257 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35865283 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35865309 C
1 C
35865310 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35865478 original size:698 final size:698
Alignment explanation
Indices: 35864141--35865539 Score: 1976
Period size: 698 Copynumber: 2.0 Consensus size: 698
35864131 ATTTTTTAAA
* *
35864141 ATTTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTTTATTTTTTTGGGCATG
1 ATTTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTTTGGGCACG
* *
35864206 CAAAAAAAAATTCAGCTAAAAACTCGAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCC
66 CAAAAAAAAATTCAGCTAAAAACTCCAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGGGTCC
* *
35864271 CCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGTGG
131 CCATTTAAGACACTTTAATAGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGG
* *
35864336 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
196 GTGTGAGTTCTCGAGCTTTGATGAGGGATAGGGCGCCAATATAAGGGCCAAGTACCAGCACCCAT
** ** * * **
35864401 CGTACATCATGTGCGCACACCCCCCAGCCCCCCCAATCGTCGGAACCCCCAATGCCGTCGGTTAG
261 CACACATCATGTAAGCACACCCCCCAGCCCCCCCAATCCTCGGAACCCCCAATACCACCGGTTAG
** * * * *
35864466 GCTCTCCGGTGATGCTCCGACGATGGTGGCCCGAGCAAAAAAGTTTGGCACCAGCACATGCCCGA
326 GCTCTCCGACGATGCTCCGACGATAGTGGCCCGAGCAAAAAAATCTGGCACCAGCACAGGCCCGA
* *
35864531 GCCCGGTATGTGCACCGTGGCTCAGAATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGG
391 GCCCGATATGTGCACCGTGGCTCAAAATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGG
* * *
35864596 AATGAACTCTGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGCGTTCAGCCAGCCAGAGAG
456 AATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGCGCTCAACCAGCCAGAGAG
* * * * *
35864661 GCAGAATATGCAAGCCAGGGATTGACCTGATCCTCCCCTACGTGTTGTCAATCCTGCTACTACAA
521 ACAGAATACGCAAGCCAGGGATCGACCCGATCCTCCCCTACGTGTTGTCAATCCTGCTACCACAA
* * * * * **
35864726 CCCTCGGTCTGATCCAATTTAGACTGGGAATGAGTTTCGTATGCATAAGTCAACCCATGAAACGA
586 CCCTCGGTCAGATCCAATTTAGACTGGAAATGACTCTCGTATACATAAGTCAACCCACAAAACGA
* * * *
35864791 GTGTGTGGGCATTGAGCCGGTCGAAGAAGCATAATGCGCAAGCCGAGG
651 GCGTGCGGGCACTGAGCCGGCCGAAGAAGCATAATGCGCAAGCCGAGG
35864839 ATTTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTGTT-GGCAC
1 ATTTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTT-TTGGGCAC
* * *
35864903 GCACAAAAAATTTCAGCTAAAAACTCCAAGTGGAGAAGATTTTGTGACCGTTTGAAGAAAGGGTC
65 GCAAAAAAAAATTCAGCTAAAAACTCCAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGGGTC
35864968 CCCATTTCAA-ACACTTTAATAGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGG
130 CCCATTT-AAGACACTTTAATAGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGG
*
35865032 GGGTGTGAGTTCTCGAGCTTTGATGAGGGATAGGGCGCCAATATAATGGCCAAGTACCAGCACCC
194 GGGTGTGAGTTCTCGAGCTTTGATGAGGGATAGGGCGCCAATATAAGGGCCAAGTACCAGCACCC
*
35865097 ATCACACATCATGTAAGCACACCCCCC-GGCCCCCCAATCCTCGGAACCCCCAATACCACCGGTT
259 ATCACACATCATGTAAGCACACCCCCCAGCCCCCCCAATCCTCGGAACCCCCAATACCACCGGTT
* * *
35865161 AGGCTCTCCGACGATGCTCCGATGATAGT-GCCCTGGGCGAAAAAAATGCT-GCACCAGCATAGG
324 AGGCTCTCCGACGATGCTCCGACGATAGTGGCCC-GAGC-AAAAAAAT-CTGGCACCAGCACAGG
*
35865224 CCCGAGCCC-ATCATGTGCACCGTGGCTCAAAATCTTAGACTGGGAATGAACTCCGTATGCTTAG
386 CCCGAGCCCGAT-ATGTGCACCGTGGCTCAAAATCTTAGACTGGGAATGAACTCCATATGCTTAG
* * * * *
35865288 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTG-AGCGGGCGCTCAATCGGC
450 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTA-CGGGCGCTCAACCAGC
** * * * *
35865352 TGGAGAGACAGAATGCGCAAGCCAGGGATCGGCCCGATCC-CCTCTGA-GTGTTGTCGATCCTGC
514 CAGAGAGACAGAATACGCAAGCCAGGGATCGACCCGATCCTCCCCT-ACGTGTTGTCAATCCTGC
* ** *
35865415 TACCGCAACCCTCGGTCCAG-TCTGATCTTAGACT-GAAAGTGAACTCT-GTATACATATGTCAA
578 TACCACAACCCTCGGT-CAGATCCAAT-TTAGACTGGAAA-TG-ACTCTCGTATACATAAGTCAA
* * *
35865477 CCCACAAAATGAGCGTGCGGGCACTGAGCCGGCCGAAGAGGCATAATGTGCAAGCCGAGG
639 CCCACAAAACGAGCGTGCGGGCACTGAGCCGGCCGAAGAAGCATAATGCGCAAGCCGAGG
35865537 ATT
1 ATT
35865540 AGCTCGGTCC
Statistics
Matches: 619, Mismatches: 70, Indels: 24
0.87 0.10 0.03
Matches are distributed among these distances:
696 4 0.01
697 102 0.16
698 505 0.82
699 8 0.01
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.23
Consensus pattern (698 bp):
ATTTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTTTGGGCACG
CAAAAAAAAATTCAGCTAAAAACTCCAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGGGTCC
CCATTTAAGACACTTTAATAGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGG
GTGTGAGTTCTCGAGCTTTGATGAGGGATAGGGCGCCAATATAAGGGCCAAGTACCAGCACCCAT
CACACATCATGTAAGCACACCCCCCAGCCCCCCCAATCCTCGGAACCCCCAATACCACCGGTTAG
GCTCTCCGACGATGCTCCGACGATAGTGGCCCGAGCAAAAAAATCTGGCACCAGCACAGGCCCGA
GCCCGATATGTGCACCGTGGCTCAAAATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGG
AATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGCGCTCAACCAGCCAGAGAG
ACAGAATACGCAAGCCAGGGATCGACCCGATCCTCCCCTACGTGTTGTCAATCCTGCTACCACAA
CCCTCGGTCAGATCCAATTTAGACTGGAAATGACTCTCGTATACATAAGTCAACCCACAAAACGA
GCGTGCGGGCACTGAGCCGGCCGAAGAAGCATAATGCGCAAGCCGAGG
Found at i:35865944 original size:343 final size:338
Alignment explanation
Indices: 35865454--35866546 Score: 1098
Period size: 367 Copynumber: 3.1 Consensus size: 338
35865444 AGACTGAAAG
* * * * ** *
35865454 TGAACTCTGTATACATATGTCAACCCACAAAATGAGCGTGCGGGCACTGAGCCGGCCGAAGAGGC
1 TGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGGTCAGCCGGCCGAAGAGGC
* * * * * *
35865519 ATAATGTGCAAGCCGAGGATTAGCTCGGTCCCCCTCTGCGTGTTACCGATCCCGCTGCCACAGCC
66 ATAATGTGCAAGCCGAGGATCAGCTCGGTCCCCCTCTGCGTGCTGCTGGT-CCGCTGCCACAACC
* * * * * *
35865584 CTTGGTCCAATTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGGG
130 CTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAG
* * *
35865649 CGTACAGGCGCTCAGCCGGCGGGAGAGGCAGAATACGCAAGCCGAGGATCAGCGCGGTCCCCCCT
195 CGT-CAGG-GCTCAGCCGGC-GGAGAGGCAAAATACGCAAGCCGGGGATCGGC-CGGTCCCCCCT
* * * *
35865714 GCGTAC-AGCAGATCCTGCTGTCGCAACACTCGGTCTGATCCGATCTTAGACTGGGAATGAACTC
256 GCGTGCTA-CAGATCCTGCTGTCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTC
*
35865778 CATATGCTTAGACTGGGGA
320 CGTATGCTTAGACTGGGGA
* * * * *
35865797 TGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCATACGGGCGGTCAGTCGGCCGAAGAGGC
1 TGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGGTCAGCCGGCCGAAGAGGC
* * *
35865862 ATAATGTGTAAGCCGGGGATC-GACCCGGTCCCCCTCTGCGTGCTGCTGGTCTCGCTGCCACAAC
66 ATAATGTGCAAGCCGAGGATCAG-CTCGGTCCCCCTCTGCGTGCTGCTGGTC-CGCTGCCACAAC
* * *
35865926 CCTCGGCCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGA
129 CCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGA
** * * *
35865991 GCGTGTGGGACTCAACCGGTCGGAGAAGCAAAATACGCAAGCCGGGGATTGGCCCGGTCCCCCCT
194 GCGTCAGGG-CTCAGCCGG-CGGAGAGGCAAAATACGCAAGCCGGGGATCGG-CCGGTCCCCCCT
* * * * * * *
35866056 GCGTGCTACCGATCCTACTATCACAACCCTTGATCCGGTCCAATCTTAGACTGGGAATGAACTCC
256 GCGTGCTACAGATCCTGCTGTCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCC
35866121 GTATGCTTAGACTGGGGA
321 GTATGCTTAGACTGGGGA
* ** ** * *
35866139 TGAACTCCGTATGCCTAAGTCAACTCACGGAACAAGCGTGCGGGTGCTCAACCGGCCAAAGAGGC
1 TGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGGTC-A---GCC------G-
* *
35866204 TGACCGAAGAGGCATAATGTGCAAGTCGAGGATCAGCTCGGTCCCCCTCTGCATGCTATCGATCC
55 -G-CCGAAGAGGCATAATGTGCAAGCCGAGGATCAGCTCGGTCCCCCTCTGCGTGC--T-G----
* * * *
35866269 CACTACCGGTCCTGCTGCCACAACCCTCAGTCTGACTAGGGCTTAGACATGGAATGAACTCCGTA
111 --CT---GGTCC-GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCATA
* * * * * * *
35866334 TGCCTAAGCCAACCCATAAAACGAGCGTGCGGGAGCTTAGTCGACCGGAGAGACAAAATGCGCAA
170 TGCCTAAGCCAACCCATGAAACGAGCGT-CAGG-GCTCAGCCG-GCGGAGAGGCAAAATACGCAA
* *
35866399 GTCGGGGATCGGCCTGG-CCCCCCTGCATGCTACCA-ATCCTGCTG-CTGCAACCCTTGGTCCGA
232 GCCGGGGATCGGCC-GGTCCCCCCTGCGTGCTA-CAGATCCTGCTGTC-GCAACCCTTGGTCCGA
35866461 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGA
294 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGA
**
35866506 TGAACTCCGTATGCCTAAGTCAATGCACAAAATGAGCGTGC
1 TGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGC
35866547 TGGTGCTCAG
Statistics
Matches: 616, Mismatches: 95, Indels: 54
0.81 0.12 0.07
Matches are distributed among these distances:
341 1 0.00
342 158 0.26
343 170 0.28
346 2 0.00
352 1 0.00
354 1 0.00
355 46 0.07
356 1 0.00
357 1 0.00
358 1 0.00
364 2 0.00
366 2 0.00
367 192 0.31
368 37 0.06
369 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (338 bp):
TGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGGTCAGCCGGCCGAAGAGGC
ATAATGTGCAAGCCGAGGATCAGCTCGGTCCCCCTCTGCGTGCTGCTGGTCCGCTGCCACAACCC
TCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGC
GTCAGGGCTCAGCCGGCGGAGAGGCAAAATACGCAAGCCGGGGATCGGCCGGTCCCCCCTGCGTG
CTACAGATCCTGCTGTCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
CTTAGACTGGGGA
Found at i:35866129 original size:26 final size:26
Alignment explanation
Indices: 35866100--35866152 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35866090 CCGGTCCAAT
35866100 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35866126 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35866152 C
1 C
35866153 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35866496 original size:26 final size:26
Alignment explanation
Indices: 35866467--35866519 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35866457 CCGATCCGAT
35866467 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35866493 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35866519 C
1 C
35866520 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35879116 original size:26 final size:26
Alignment explanation
Indices: 35879078--35879130 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
35879068 GGCTAAAACT
35879078 CTTAGACTGGGAATGAACTT-CGTATG
1 CTTAGACTGGGAATGAA-TTCCGTATG
35879104 CTTAGACAT-GGAATGAATTCCGTATG
1 CTTAGAC-TGGGAATGAATTCCGTATG
35879130 C
1 C
35879131 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 22 0.88
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAATTCCGTATG
Found at i:35879396 original size:158 final size:158
Alignment explanation
Indices: 35879103--35879405 Score: 423
Period size: 158 Copynumber: 1.9 Consensus size: 158
35879093 AACTTCGTAT
* * *
35879103 GCTTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * **
35879168 TCAGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCAGTCC
66 TCAGTCAGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTACGTGCTACCAGTCC
35879233 CGCTGCCACAACCCTTGGTCTGGCTGGG
131 CGCTGCCACAACCCTTGGTCTGGCTGGG
* *
35879261 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGCGTTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGA-GCGTGCGGGCGCTCA
* * * *
35879325 G-CTGGTCAGAGAGGTAGAATGTGCAAGCCGAGGATCGACTCGGTCCCCCCTACGTGCTACC-GA
65 GTC-AGTCAGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTACGTGCTACCAG-
*
35879388 TCCTGCTGCCACAACCCT
128 TCCCGCTGCCACAACCCT
35879406 CGATCCGGTC
Statistics
Matches: 127, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
157 3 0.02
158 124 0.98
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
TCAGTCAGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTACGTGCTACCAGTCC
CGCTGCCACAACCCTTGGTCTGGCTGGG
Found at i:35879424 original size:158 final size:158
Alignment explanation
Indices: 35879103--35879445 Score: 392
Period size: 158 Copynumber: 2.2 Consensus size: 158
35879093 AACTTCGTAT
* * *
35879103 GCTTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * **
35879168 TCAGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCAGTCC
66 TCAGTCAGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTACGTGCTACCAGTCC
* * * ***
35879233 CGCTGCCACAACCCTTGGTCTGGCTGGG
131 CGCTGCCACAACCCTCGATCCGGCTCAA
* * *
35879261 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGCGTTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGA-GCGTGCGGGCGCTCA
* * * *
35879325 G-CTGGTCAGAGAGGTAGAATGTGCAAGCCGAGGATCGACTCGGTCCCCCCTACGTGCTACC-GA
65 GTC-AGTCAGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTACGTGCTACCAG-
*
35879388 TCCTGCTGCCACAACCCTCGATCCGG-TCCAA
128 TCCCGCTGCCACAACCCTCGATCCGGCT-CAA
*
35879419 TCTTAG--ATGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
35879446 TTAGACTGGG
Statistics
Matches: 157, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
156 2 0.01
157 21 0.13
158 134 0.85
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
TCAGTCAGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTACGTGCTACCAGTCC
CGCTGCCACAACCCTCGATCCGGCTCAA
Found at i:35879448 original size:25 final size:26
Alignment explanation
Indices: 35879420--35879471 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35879410 CCGGTCCAAT
35879420 CTTAGA-TGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
35879445 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
35879471 C
1 C
35879472 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35879923 original size:367 final size:341
Alignment explanation
Indices: 35879077--35879938 Score: 798
Period size: 367 Copynumber: 2.4 Consensus size: 341
35879067 TGGCTAAAAC
*
35879077 TCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAATTCCGTATGCCTAAGCCAACC
1 TCTTAGA-TGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * ** * * * * * *
35879142 CACAAAACGAGCGTGCGGGTGCTCAGTCAGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACC
65 CACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCAACC
* * * ** ** * *
35879207 CAGTCCCCCCTGCGTGCTGTCAGTCCCGCTGCCACAACCCTTGGTCTGGCTGGGGCTTAGACATG
130 CAGTCCCCCCTACGTGCTGCCAATCCCGCTGCCACAACCCTCAGTCCAGCCGAGGCTTAGACATG
* * * * *
35879272 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGTTCAGCTGGTCAGAGA
195 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCATGCAGGCGCTCAGCCGATCAGAGA
* * *
35879337 GGTAGAATGTGCAAGCCGAGGATCGACTCGGTCCCCCCTACGTGCTACCGATCCTGCTGCCACAA
260 GGCAGAATGCGCAAGCCGAGGATCGACTCGGTCCCCCCTACGTGCTACCAATCCTGCTGCCACAA
35879402 CCCTCGATCCGGTCCAA
325 CCCTCGATCCGGTCCAA
* * * *
35879419 TCTTAGATGGGAATGAACTCCATATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACC
1 TCTTAGATGGGAATGAACTTCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACC
* * *
35879483 CACGAAACGAGTGTACGAGCGCTCAACCGACCTGAGAGGCCAGTCGGAGAGGCATAATGCGCAAG
65 CACGAAACGAGCGTACGGGCGCTC-A---ACC-----GGCCA----GAGAGGCAGAATGCGCAAG
*
35879548 -TCGGGGATCAACCCTGTCCCCCTCTACGTGCTGCCAATCCCGCTATCGGTCTTGCTACCACAAC
117 CT-GGGGATCAACCCAGTCCCCC-CTACGTGCTGCCAAT--C-C---C-G-C-TG---CCACAAC
* *
35879612 CCTCAGTCCAGCCGAGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAAC-G
168 CCTCAGTCCAGCCGAGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAG
* * * * *
35879676 AGCATGCAGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGCCGGGGAT-GGCCCTGGTCCCC
233 -GCATGCAGGCGCTCAGCCGATCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACTC-GGTCCCC
* * **
35879740 TCCTGCGTGCTGCCAATCCTGCTACTAGTCCTACTGCTGCAA-CCTCGATCCGGTCTGA
296 -CCTACGTGCTACCAATCCTG---CT-G-CC-A------CAACCCTCGATCCGGTCCAA
* * *
35879798 TCTTAGATTGGGAATGAACTTTGTATGCTTAGACATGGTATGAACTCCGTATGCTTAAGCCAACC
1 TCTTAGA-TGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* *
35879863 CACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGAGGCAGAATGTGCAAGCTGGGGATCAGCC
65 CACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCAACC
*
35879928 CGGTCCCCCCT
130 CAGTCCCCCCT
35879939 GCGCACTGTC
Statistics
Matches: 414, Mismatches: 60, Indels: 68
0.76 0.11 0.13
Matches are distributed among these distances:
340 1 0.00
341 69 0.17
342 8 0.02
345 1 0.00
350 2 0.00
354 35 0.08
355 12 0.03
357 1 0.00
358 1 0.00
361 1 0.00
362 1 0.00
363 1 0.00
364 2 0.00
366 6 0.01
367 144 0.35
368 18 0.04
371 7 0.02
372 1 0.00
373 2 0.00
374 1 0.00
376 3 0.01
379 22 0.05
380 74 0.18
381 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (341 bp):
TCTTAGATGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCAACCC
AGTCCCCCCTACGTGCTGCCAATCCCGCTGCCACAACCCTCAGTCCAGCCGAGGCTTAGACATGG
AATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCATGCAGGCGCTCAGCCGATCAGAGAG
GCAGAATGCGCAAGCCGAGGATCGACTCGGTCCCCCCTACGTGCTACCAATCCTGCTGCCACAAC
CCTCGATCCGGTCCAA
Found at i:35880388 original size:158 final size:157
Alignment explanation
Indices: 35879837--35880400 Score: 494
Period size: 158 Copynumber: 3.6 Consensus size: 157
35879827 TAGACATGGT
* * * *
35879837 ATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGG
* * * ** * * * *
35879902 CAGAATGTGCAAGCTGGGGATC-AGCCCGGTCCCCCCTGCGCACTGTCGATCTTGCAGTCGCAAC
66 CAGAATGCGCAAGC-CGGGATCGA-CCCGATCCCCCCTGCGTGCTGCCAATCCTGCTGTCGCAAC
* * *
35879966 CCTTGGT-CTGATCCGATCTTAGACTGGGA
129 CCTTGGTCCAG-TCTGATCTTAGAATGGGA
* * * * * *
35879995 ATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGTCGCTGAGCCAGTC-GAAGAG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG-AGAG
* * * * * * * * * *
35880059 GCATAACGCGTAGGCCGGCGATCGGCGCGATCCCCCTCTGTGTGCTGCCAATCCTGTTGCCACAA
65 GCAGAATGCGCAAGCCGG-GATCGACCCGATCCCCC-CTGCGTGCTGCCAATCCTGCTGTCGCAA
* * **
35880124 CCATCGGTCCAG-CTAGGGCTTAGACAT-GGA
128 CCCTTGGTCCAGTCT-GATCTTAGA-ATGGGA
* * * * *
35880154 ATGAACTCCCTTTGCCTAAG-CTAACCCACAAAACG-GACGGGCGGGCGCTCAGCCGGTCAGAGA
1 ATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAG-CGTGCGGGCGCTCAGCCGGCCAGAGA
* * * *
35880217 GGCAGAATACGCAAGCCGAGAATCGACCCGATCTCCCCTGCGTGCTGCCAATCCTACTGTCGCAA
64 GGCAGAATGCGCAAGCCG-GGATCGACCCGATCCCCCCTGCGTGCTGCCAATCCTGCTGTCGCAA
*
35880282 CCCTTGGTCCAGTCTGATCTTAGATTGGGA
128 CCCTTGGTCCAGTCTGATCTTAGAATGGGA
* * * *
35880312 ATCAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGACCAGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGG
* **
35880377 TAGGTTGCGCAAGCCGGGGATCGA
66 CAGAATGCGCAAGCC-GGGATCGA
35880401 ACGGGTGGTA
Statistics
Matches: 312, Mismatches: 78, Indels: 32
0.74 0.18 0.08
Matches are distributed among these distances:
157 4 0.01
158 190 0.61
159 113 0.36
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGG
CAGAATGCGCAAGCCGGGATCGACCCGATCCCCCCTGCGTGCTGCCAATCCTGCTGTCGCAACCC
TTGGTCCAGTCTGATCTTAGAATGGGA
Found at i:35881034 original size:26 final size:26
Alignment explanation
Indices: 35880996--35881048 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35880986 GGCTCAAAAT
35880996 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35881022 CTTAGACAT-GGAATGACCTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35881048 C
1 C
35881049 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35881364 original size:159 final size:159
Alignment explanation
Indices: 35881179--35881754 Score: 581
Period size: 159 Copynumber: 3.6 Consensus size: 159
35881169 CCGATCTGAT
* * * * * *
35881179 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAGC
1 CTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
* *
35881244 AGGCCGAAGAGGCATATTGCGTAAGCCGGGGATCGACTTGGTCCCCCTCTATGTGCTATCGAT-C
66 AGGCCGAAGAGGCAGAATGCGTAAGCCGGGGATCGACTTGGTCCCCCTCTATGTGCTATCGATCC
*
35881308 TCCTTGCCACAACCCTCGGTCTGGCTAGGG
131 TGC-TGCCACAACCCTCGGTCTGGCTAGGG
* *
35881338 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGTA-CGTGCAAGCGCTCA
1 CTTAGACTA-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-AGCGTGCGAGCGCTCA
* * ** * *
35881401 GTCA-GTCGAAGAAGCAGAATGCGTAAGCCAAGGATCGACCTGGTCCCCC-CTGTGTGCTATCGA
64 G-CAGGCCGAAGAGGCAGAATGCGTAAGCCGGGGATCGACTTGGTCCCCCTCTATGTGCTATCGA
* ** * **
35881464 TCCTGCTACCGTAACCCTTGGTCTGGTCT-GAT
128 TCCTGCTGCCACAACCCTCGGTCTGG-CTAGGG
* * * * * * * * *
35881496 CTTAGACTAGAAATGAACTCCGTATGCGTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTGAGC
1 CTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
* * * ** * * * * *
35881561 CGACCGAAGAGGCATAATGCACAAGCCGGGGATCGACTCGGTCCCTCTCTACGTGCTGTCGGTCC
66 AGGCCGAAGAGGCAGAATGCGTAAGCCGGGGATCGACTTGGTCCCCCTCTATGTGCTATCGATCC
* * **
35881626 TGCTGCCACAGCCGTCGGTCCAGCTAGGG
131 TGCTGCCACAACCCTCGGTCTGGCTAGGG
* *
35881655 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGAGCTCTCAG
1 CTTAGACTA-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
* * * *
35881719 CCGGTCGAAGAGGCAGAATGCGTAAGCTGGAGATCG
65 CAGGCCGAAGAGGCAGAATGCGTAAGCCGGGGATCG
35881755 GCCCGATCCC
Statistics
Matches: 328, Mismatches: 78, Indels: 22
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 118 0.36
159 205 0.62
160 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
AGGCCGAAGAGGCAGAATGCGTAAGCCGGGGATCGACTTGGTCCCCCTCTATGTGCTATCGATCC
TGCTGCCACAACCCTCGGTCTGGCTAGGG
Done.