Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 397 of 402
Found at i:35881533 original size:158 final size:158
Alignment explanation
Indices: 35881022--35881839 Score: 476
Period size: 159 Copynumber: 5.2 Consensus size: 158
35881012 ACTCCGTATG
* * * * * * *
35881022 CTTAGAC-ATGGAATGACCTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACAGGCACCCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACAAGCGCTCAG
** * ** * * ** *
35881086 TCA-GCC-ATA-AAGGCA-AATGCACAAGCCAGGGATTAACCCGATCCCCCCTGCATGCTGTCGA
65 -CAGGCCGA-AGAA-GCAGAATGCGTAAGCCAAGGATCGACCTGGTCCCCCCTGTGTGCTATCGA
* * *
35881147 TCCTACTATCGCAACCCTCGGTCCGATCTGAT
127 TCCTACTACCGCAACCCTCGGTCTGGTCTGAT
** *
35881179 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACAAGCGCTCAGC
* * * ** * *
35881244 AGGCCGAAGAGGCATATTGCGTAAGCCGGGGATCGACTTGGTCCCCCTCTATGTGCTATCGAT-C
66 AGGCCGAAGAAGCAGAATGCGTAAGCCAAGGATCGACCTGGTCCCCC-CTGTGTGCTATCGATCC
* * * **
35881308 TCCTTGCCACAACCCTCGGTCTGG-CTAGGG
130 TAC-TACCGCAACCCTCGGTCTGGTCT-GAT
* * * * *
35881338 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGTA-CGTGCAAGCGCTCA
1 CTTAGACTA-GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACG-AGCGTACAAGCGCTCA
*
35881401 GTCA-GTCGAAGAAGCAGAATGCGTAAGCCAAGGATCGACCTGGTCCCCCCTGTGTGCTATCGAT
64 G-CAGGCCGAAGAAGCAGAATGCGTAAGCCAAGGATCGACCTGGTCCCCCCTGTGTGCTATCGAT
* * *
35881465 CCTGCTACCGTAACCCTTGGTCTGGTCTGAT
128 CCTACTACCGCAACCCTCGGTCTGGTCTGAT
* * * * * ** * *
35881496 CTTAGACTAGAAATGAACTCCGTATGCGTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACAAGCGCTCAGC
* * * * ** ** * ** * *
35881561 CGACCGAAGAGGCATAATGCACAAGCCGGGGATCGA-CTCGGTCCCTCTCTACGTGCTGTCGGTC
66 AGGCCGAAGAAGCAGAATGCGTAAGCCAAGGATCGACCT-GGTCCC-CCCTGTGTGCTATCGATC
* * * * * ** **
35881625 CTGCTGCCACAGCCGTCGGTCCAG-CTAGGG
129 CTACTACCGCAACCCTCGGTCTGGTCT-GAT
* * * * * * *
35881655 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGAGCTCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACAAGCGCTCAG
* * * ** * * * ** * * *
35881719 CCGGTCGAAGAGGCAGAATGCGTAAG-CTGGAGATCGGCCCGATCCCCCCTGCATGTTGTTGATC
65 CAGGCCGAAGAAGCAGAATGCGTAAGCCAAG-GATCGACCTGGTCCCCCCTGTGTGCTATCGATC
* * * * * *
35881783 CTACTGCTGTAACCCTCGATCCGATCTGAT
129 CTACTACCGCAACCCTCGGTCTGGTCTGAT
* *
35881813 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
35881840 TTAGACTGGG
Statistics
Matches: 509, Mismatches: 128, Indels: 47
0.74 0.19 0.07
Matches are distributed among these distances:
156 2 0.00
157 65 0.13
158 201 0.39
159 237 0.47
160 4 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACAAGCGCTCAGC
AGGCCGAAGAAGCAGAATGCGTAAGCCAAGGATCGACCTGGTCCCCCCTGTGTGCTATCGATCCT
ACTACCGCAACCCTCGGTCTGGTCTGAT
Found at i:35881595 original size:317 final size:317
Alignment explanation
Indices: 35881021--35881839 Score: 966
Period size: 317 Copynumber: 2.6 Consensus size: 317
35881011 AACTCCGTAT
* * * * *
35881021 GCTTAGACATGGAATGACCTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACAGGCACCCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCAAGCACTCAG
* ** * * *
35881086 TCAG-CCATA-AAGGCA-AATGCACAAGCCAGGGATTAACCCGATCCCCCCTGCATGCTGTCGAT
66 TCAGTCGA-AGAA-GCAGAATGCGTAAGCCAAGGATCAACCCGATCCCCCCTGCATGCTATCGAT
* *
35881148 CCTACTATCGCAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTC
129 CCTACTACCGCAACCCTCGGTCCGATCTGATCTTAGACTAGAAATGAACTCCGTATGCATAAGTC
* * * **
35881213 AACCCACGAAACGAGCGTACGGGCGCTGAGCAGGCCGAAGAGGCATATTGCGTAAGCCGGGGATC
194 AACCCACAAAACGAGCGTACGGGCGCTGAGCAGACCGAAGAGGCATAATGCACAAGCCGGGGATC
* * **
35881278 GACTTGGTCCCCCTCTATGTGCTATCGAT-CTCCTTGCCACAACCCTCGGTCTGGCTAGG
259 GACTCGGTCCCCCTCTACGTGCTATCGATCCTCC-TGCCACAACCCTCGGTCCAGCTAGG
* * *
35881337 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGTACGTGCAAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCAAGCACTCAG
* * * **
35881402 TCAGTCGAAGAAGCAGAATGCGTAAGCCAAGGATCGACCTGGTCCCCCCTGTGTGCTATCGATCC
66 TCAGTCGAAGAAGCAGAATGCGTAAGCCAAGGATCAACCCGATCCCCCCTGCATGCTATCGATCC
* * * * * *
35881467 TGCTACCGTAACCCTTGGTCTGGTCTGATCTTAGACTAGAAATGAACTCCGTATGCGTAAGTCAA
131 TACTACCGCAACCCTCGGTCCGATCTGATCTTAGACTAGAAATGAACTCCGTATGCATAAGTCAA
* * * *
35881532 CCCACAAAATGAGCGTGCGGGTGCTGAGCCGACCGAAGAGGCATAATGCACAAGCCGGGGATCGA
196 CCCACAAAACGAGCGTACGGGCGCTGAGCAGACCGAAGAGGCATAATGCACAAGCCGGGGATCGA
* * * * * *
35881597 CTCGGTCCCTCTCTACGTGCTGTCGGTCCTGCTGCCACAGCCGTCGGTCCAGCTAGG
261 CTCGGTCCCCCTCTACGTGCTATCGATCCTCCTGCCACAACCCTCGGTCCAGCTAGG
* *
35881654 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AAGCGTGCGAGCTCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAA-CGTGCAAGCACTCA
* * * ** ** * * *
35881718 GCCGGTCGAAGAGGCAGAATGCGTAAG-CTGGAGATCGGCCCGATCCCCCCTGCATGTTGTTGAT
65 GTCAGTCGAAGAAGCAGAATGCGTAAGCCAAG-GATCAACCCGATCCCCCCTGCATGCTATCGAT
* * * * * * *
35881782 CCTACTGCTGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGC
129 CCTACTACCGCAACCCTCGGTCCGATCTGATCTTAGACTAGAAATGAACTCCGTATGC
35881840 TTAGACTGGG
Statistics
Matches: 424, Mismatches: 73, Indels: 11
0.83 0.14 0.02
Matches are distributed among these distances:
316 68 0.16
317 353 0.83
318 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCAAGCACTCAG
TCAGTCGAAGAAGCAGAATGCGTAAGCCAAGGATCAACCCGATCCCCCCTGCATGCTATCGATCC
TACTACCGCAACCCTCGGTCCGATCTGATCTTAGACTAGAAATGAACTCCGTATGCATAAGTCAA
CCCACAAAACGAGCGTACGGGCGCTGAGCAGACCGAAGAGGCATAATGCACAAGCCGGGGATCGA
CTCGGTCCCCCTCTACGTGCTATCGATCCTCCTGCCACAACCCTCGGTCCAGCTAGG
Found at i:35881842 original size:26 final size:26
Alignment explanation
Indices: 35881813--35881865 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35881803 CCGATCTGAT
*
35881813 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35881839 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35881865 C
1 C
35881866 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35883076 original size:26 final size:26
Alignment explanation
Indices: 35883047--35883099 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35883037 CTGATCCGAT
35883047 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35883073 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35883099 C
1 C
35883100 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35883417 original size:355 final size:343
Alignment explanation
Indices: 35882730--35883428 Score: 778
Period size: 355 Copynumber: 2.0 Consensus size: 343
35882720 CCATTTCGAT
* * *
35882730 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAATCCACGAAATGAGCGTACGGGTGCTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTACGGGTGCTCAAC
* * * *
35882795 CGGCCAAAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCCTTCTGTGTGTTGTCGGTCC
66 CGGCCAAAGAGGCATAATGCACAAGCAGAGGATCAGCCCGATCCCCTTCTGTGTCTTGTCAGTCC
* *
35882860 CACTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATAGAATGAACTCCCTATCCATAAGCCAA
131 CACTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACATAGAATGAACTCCCTATCCATAAGCCAA
* * * * *
35882925 CCCAAAAAATGAGCTTGCGGGCGCTTAGCCAGTTGAACAAGCAGAATGCGCAAGCTGGGGATAGG
196 CCCAAAAAAGGAGCGTGCGGGCGCTCAACCAGTCGAACAAGCAGAATGCGCAAGCTGGGGATAGG
* * *
35882990 CCCGATCCACCCTGCATGCTATCGATCCTGTTGTCACAACCCTCGGACTGATCCGATCTTAGACT
261 CCCGATCCACCCTGCATCCTATCGATCCTGCTGCCACAACCCTCGGACTGATCCGATCTTAGACT
* *
35883055 GGGAATGAACTCCGTATG
326 AGGAATGAACTCCATATG
* * *
35883073 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGTGCTCAAC
1 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTACGGGTGCTCAAC
* ** *
35883138 CGGTCGGAGAGGCATAATGCACAAGTCAG-GGATCAGCTCGATCCCCGTCTGCATGCTGCCGATC
66 CGGCCAAAGAGGCATAATGCACAAG-CAGAGGATCAGCCCGATCCCC-T-T-C-TG-T---G-TC
** * * * * *
35883202 TCACTGTCAGTCCTGCTGCCACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTTCGT
121 T---TGTCAGTCCCACTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACATAGAATGAACTCCCT
** * * * * * * *
35883267 ATGCC-TAAGCCAACCCACGAAAGGAGCGTGCGGTCGGTCAACCGGTCGGAGAGGTAGAAT-CTG
183 AT-CCATAAGCCAACCCAAAAAAGGAGCGTGCGGGCGCTCAACCAGTCGAACAAGCAGAATGC-G
* * * * *
35883330 CAAG-TCGGGGATCA-GCCCGATCCCCCCTGCGTCCTATCGATCCTGCTGCCGCAACCTTCGGTC
246 CAAGCT-GGGGAT-AGGCCCGATCCACCCTGCATCCTATCGATCCTGCTGCCACAACCCTCGGAC
*
35883393 TGATCCGATCTTAGCCTAGGAATGAACTCCATATG
309 TGATCCGATCTTAGACTAGGAATGAACTCCATATG
35883428 C
1 C
35883429 CTAAGTCAAC
Statistics
Matches: 291, Mismatches: 48, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
343 96 0.33
344 3 0.01
345 1 0.00
346 1 0.00
347 2 0.01
348 1 0.00
351 1 0.00
352 2 0.01
354 2 0.01
355 179 0.62
356 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (343 bp):
CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTACGGGTGCTCAAC
CGGCCAAAGAGGCATAATGCACAAGCAGAGGATCAGCCCGATCCCCTTCTGTGTCTTGTCAGTCC
CACTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACATAGAATGAACTCCCTATCCATAAGCCAA
CCCAAAAAAGGAGCGTGCGGGCGCTCAACCAGTCGAACAAGCAGAATGCGCAAGCTGGGGATAGG
CCCGATCCACCCTGCATCCTATCGATCCTGCTGCCACAACCCTCGGACTGATCCGATCTTAGACT
AGGAATGAACTCCATATG
Found at i:35883646 original size:158 final size:158
Alignment explanation
Indices: 35883212--35883666 Score: 465
Period size: 158 Copynumber: 2.9 Consensus size: 158
35883202 TCACTGTCAG
* * * *
35883212 TCCTGCTGCCACAACCCTC-AGTCCGGTTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAG
1 TCCTGCTGCCACAACCCTCGA-TCTGATTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAG
* * *
35883276 CCAACCCACGAAAGGAGCGTGCGGTCGGTCAACCGGTCGGAGAGGTAGAAT-CTGCAAGTCGGGG
65 CCAACCCATGAAAGGAGCGTGCGGTCGCTCAACCGGTCGGAGAGGTAGAATGC-GCAAGCCGGGG
*
35883340 ATCAGCCCGATCCCCCCTGCGTCCTATCGA
129 ATCAGCCCGATCCCCCCTGCGTCCTATCAA
* * * ** ** *
35883370 TCCTGCTGCCGCAACCTTCGGTCTGATCCGATCTTAG-CCTAGGAATGAACTCCATATGCCTAAG
1 TCCTGCTGCCACAACCCTCGATCTGATTGGGGCTTAGACAT-GGAATGAACTCCATATGCCTAAG
* * * * ** * * * *
35883434 TCAACCCATGAAAGGAGCGTGCGGGCACT-GAGTGAATCGGAGTGGCATAATGCGCAAGCCGGGG
65 CCAACCCATGAAAGGAGCGTGCGGTCGCTCAACCG-GTCGGAGAGGTAGAATGCGCAAGCCGGGG
* ** ** *
35883498 A-CTGGCCCGATCCCTTTCTGTTTGCTATCAA
129 ATC-AGCCCGATCCC-CCCTGCGTCCTATCAA
*
35883529 TCC-GCTGCCACAACCCTCGATCTGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGATCTGATTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGC
* * * *
35883593 CAACCTATGAAATGG-GCGTGCGGTCGCTCAACCGGTCGAAGAGGTAGACTGCGCAAGCTGGGGA
66 CAACCCATGAAA-GGAGCGTGCGGTCGCTCAACCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGA
35883657 TCAGCCCGAT
130 TCAGCCCGAT
35883667 TCGCCTTGGG
Statistics
Matches: 231, Mismatches: 56, Indels: 20
0.75 0.18 0.07
Matches are distributed among these distances:
157 5 0.02
158 205 0.89
159 21 0.09
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
TCCTGCTGCCACAACCCTCGATCTGATTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGC
CAACCCATGAAAGGAGCGTGCGGTCGCTCAACCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGAT
CAGCCCGATCCCCCCTGCGTCCTATCAA
Found at i:35884480 original size:26 final size:26
Alignment explanation
Indices: 35884442--35884494 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
35884432 GGCTCAAAAT
35884442 CTTAGACTGGGAATGAACTTC-GTATG
1 CTTAGACTGGGAATGAAC-TCGGTATG
35884468 CTTAGACAT-GGAATGAACTCGGTATG
1 CTTAGAC-TGGGAATGAACTCGGTATG
35884494 C
1 C
35884495 GTAAGACAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 22 0.88
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCGGTATG
Found at i:35885989 original size:159 final size:159
Alignment explanation
Indices: 35885694--35886196 Score: 536
Period size: 159 Copynumber: 3.2 Consensus size: 159
35885684 ACTTCGTATG
* *
35885694 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCA-A
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGA
* * * *
35885758 CCGGTCGAAGAGGCAGAATGTGCAAGCC-AGGGATCGGCCCAATCCCCCCCTGTGTGCTATCGAT
66 -CGGCCGAAGAGGCAGAATGCGCAAGCCGA-GGATCGGCCCAGTCCCCCCCTGCGTGCTATCGAT
* *
35885822 CCTACTGCCACAACCCTCAGTCTGATCTGAT
129 CCTGCTGCCACAACCCTCAGTCTGGTCTGAT
* * * * *
35885853 TTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
** * * * * ** *
35885917 TTGGCCAAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGGTC
65 ACGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAGTCCCCCCCTGCGTGCTATCGATC
* * * **
35885982 CCGCTGCCATAACCCTCAGTTTGGT-TGGGG
130 CTGCTGCCACAACCCTCAGTCTGGTCT-GAT
* * * * *
35886012 CTTACACATGGAATTAAGTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGA
* * * *
35886077 CGGTCGGAA-AGGAAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCCTGCTTGCTATCGATC
66 CGG-CCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAGTCCCCCCCTGCGTGCTATCGATC
* *
35886141 CTGCAT--CACAACCCTCCGTCCGGTCTGAT
130 CTGC-TGCCACAACCCTCAGTCTGGTCTGAT
*
35886170 CTTAGAC-TGGAAATGAACTCTGTATGC
1 CTTAGACATGG-AATGAACTCCGTATGC
35886197 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 62, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.01
158 35 0.13
159 229 0.84
160 6 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGA
CGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAGTCCCCCCCTGCGTGCTATCGATCC
TGCTGCCACAACCCTCAGTCTGGTCTGAT
Found at i:35886211 original size:26 final size:26
Alignment explanation
Indices: 35886170--35886222 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35886160 CCGGTCTGAT
*
35886170 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
** *
35886196 CTTAGACTGGGGATGAATTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
35886222 C
1 C
35886223 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:35887062 original size:157 final size:158
Alignment explanation
Indices: 35886562--35887061 Score: 501
Period size: 157 Copynumber: 3.2 Consensus size: 158
35886552 ACTCCATATG
* * * *
35886562 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTCCGGGCGCTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTAAG
** * * *
35886626 CCAACCGGAGAGGCAAAATGCGTAAGCCAGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCC
65 CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
*
35886691 TACTGCCGCAACCCTCGATCCAGTCTGAT
130 TACTGCCGCAACCCTCGATCCAGTCCGAT
* * * *
35886720 CTTAGACTGGGAATGAACT-C-TATAGCCTAAGTCAACCCACGAAATGAGCGTGCGGACACTGAA
1 CTTAGAATGGGAATGAACTCCGTAT-GCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCT-AA
* * * * * * * *
35886783 -CTGGCCGGAGAGGCATATTGTGCAAGCCGGGGATCGACCCGAATCCCCCTCTGTGTGTTGCCGA
64 GCCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCG-GTCCCCC-CTGCGTGCTGTCGA
* ** * * * * **
35886847 TCCCACTGCCATAACCTTAGGTCCAG-CTGGGG
127 TCCTACTGCCGCAACCCTCGATCCAGTC-CGAT
* * * *
35886879 CTTAGACAT-GGAATGAACTCCCTATGGCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTAAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTAAG
* * * * * *
35886943 CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGGT-CCTCCTGCGTGCTGTCGATCC
65 CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
*
35887007 TACTGCCGCAACCCTCGATCCAGTCCCAT
130 TACTGCCGCAACCCTCGATCCAGTCCGAT
*
35887036 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
35887062 GTTAGACTGG
Statistics
Matches: 268, Mismatches: 62, Indels: 25
0.75 0.17 0.07
Matches are distributed among these distances:
156 4 0.01
157 118 0.44
158 28 0.10
159 50 0.19
160 65 0.24
161 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTAAGC
CGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCT
ACTGCCGCAACCCTCGATCCAGTCCGAT
Found at i:35887077 original size:26 final size:26
Alignment explanation
Indices: 35887037--35887087 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
35887027 CAGTCCCATC
*
35887037 TTAGATTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
35887063 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
35887088 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:35887345 original size:866 final size:863
Alignment explanation
Indices: 35885666--35887995 Score: 2755
Period size: 867 Copynumber: 2.7 Consensus size: 863
35885656 GTGGCTCAAA
* * *
35885666 ATCTTTGATTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAC
1 ATCTTAGATTGGGAATGAACTTCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * *
35885731 CCACGAAACAAGCGTGCGGGCACTCAACCGGTCGAAGAGGCAGAATGTGCAAGCCAGGGATCGGC
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGAAAGCCAGGGATCGAC
* * * * *
35885796 CCAATCCCCCCCTGTGTGCTATCGATCCTACTGCCACAACCCTC-AGTCTGATCTGATTTTAGAC
131 CCGAT-CCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGA-TCTGATCTGATCTTAGAC
* *
35885860 TGGGAATGAACTCCGTAT-GCATAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGTTGGCCA
194 TGGGAATGAACT-C-TATAGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCTGGCCA
* * *
35885924 AAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGC
257 AAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGATCCCGCTGC
* * ** * * *
35885989 CATAACCCTCAGTTTGGTTGGGGCTTACACATGGAATTAAGTCCCTATGCCTAAGCCAACCCACG
322 CATAA-CCTTAGGTCCGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* * * * *
35886054 AAACGGGCGTGCGGGCACTCAGACGGTCGGAAAGGAAGAATGCGCAAGCCGGGGATCGGCCCAGT
386 AAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGAAGAATGCGCAAGCTGGGGATCGG-CCGGT
* * * **
35886119 CCCCCCCTGCTTGCTATCGATCCTGCAT-CACAACCCTCCGTCCGGTCTGATCTTAGACTGGAAA
450 -CCCCCCTGCATGCTATCGATCCTGC-TGCGCAACCCT-CGTCCAGTCCAATCTTAGACTGGAAA
* * * *
35886183 TGAACTCTGTATGCTTAGACTGGGGATGAATTCCGTATGCCTAAGTTAACCCATGAAATGAGCAT
512 TGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGT
* * * * *
35886248 ACGGGCACTCAGCCAACTGGAAAGGCATAATGTATATGCCGGGGATCAACCCGATCCCCCTCTGC
577 ACGGGCGCTCAGCCAACCGGAAAGGCATAATGCATAAGCCAGGGATCAACCCGATCCCCCTCTGC
** *
35886313 GTGCTACCGATCCCGTTGTCGATCTTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGG
642 GTGCTACCGATCCCACTGTCGATCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGG
* * * *
35886378 AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATTCGGGCGCTCAGCCGGTCGGAGAG
707 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAACCGGTCGGAGAG
* *
35886443 GTAGAATGCGCAAGCCGGGGGTCAGCCCGGTCCCCC-TACGTGCTGT-TGATCCTACTGTTGGTC
772 GTAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTTACGTGCTGTCT-ATCCTACTGCTGGTC
* *
35886506 CTGCTGGCACAACCCTCTGTCC-GATCCG
836 CTACTGGCACAACCCTCAGTCCAG-TCCG
*
35886534 ATCTTAGATTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGATTGGGAATGAACTTCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * * *
35886599 CCATGAAATGAGTGTCCGGGCGCTCAGCCAACCGGAGAGGCAAAATGCGTAAGCCAGGGATCGAC
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGAAAGCCAGGGATCGAC
* * *
35886664 CCGGTCCCCCCTGCATGCTGTCGATCCTACTGCCGCAACCCTCGATC-CAGTCTGATCTTAGACT
131 CCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGATCTGA-TCTGATCTTAGACT
* * **
35886728 GGGAATGAACTCTATAGCCTAAGTCAACCCACGAAATGAGCGTGCGGACACTGAACTGGCCGGAG
195 GGGAATGAACTCTATAGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCTGGCCAAAG
* * * * * *
35886793 AGGCATATTGTGCAAGCCGGGGATCGACCCGAATCCCCCTCTGTGTGTTGCCGATCCCACTGCCA
260 AGGCATAATGCGCAAGCCGGGGATCGACCCG-GTCCCCCTCTGCGTGCTGCCGATCCCGCTGCCA
* *
35886858 TAACCTTAGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGGCTAAGCCAACCCACGAA
324 TAACCTTAGGTCC-GTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * * *
35886923 ATGGGCGTGCGGGTGCTAAGCCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGGT-C
388 ACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGAAGAATGCGCAAGCTGGGGATCGGC-CGGTCC
* * * * * * *
35886987 CTCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGATCCAGTCCCATCTTAGATTGGGAATGA
452 CCCCTGCATGCTATCGATCCTGCTG-CGCAACCCTCG-TCCAGTCCAATCTTAGACTGGAAATGA
* * *
35887052 ACTCCGTATGGTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCG
515 ACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACG
*** * * * * * *
35887117 GGCGCTCAGCGTGCCGGAGAGGCATAATGCATAAGCCAGGGATTAGCTCGGTGCCCCTCTGCGTG
580 GGCGCTCAGCCAACCGGAAAGGCATAATGCATAAGCCAGGGATCAACCCGATCCCCCTCTGCGTG
** * * * *
35887182 CTGTCGATCCCACTGTCGGTCCTGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAAT
645 CTACCGATCCCACTGTCGATCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAAT
* ** * *
35887247 GAAC-CTTGTATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGTGCTCAATCGG-CTGGAGAGG
710 GAACTC-CGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAACCGGTC-GGAGAGG
* * * * * * *
35887310 TAGAATGTGCAAGCTGGGGATCGGCTCGGTCCCCCTTATGTGCTGTCTATTCTGCTGCTGGTCCT
773 TAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTTACGTGCTGTCTATCCTACTGCTGGTCCT
* *
35887375 ACTGTCACAACCTTCAGTCCAGTCCG
838 ACTGGCACAACCCTCAGTCCAGTCCG
* * * * *
35887401 ATCTTAGACTGGGAATGAACTTCTTATGCTTAGACAAGGAATGAACTCCGCATGCGTAAGCCAAC
1 ATCTTAGATTGGGAATGAACTTCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
35887466 CCACGAAACGAGCGTGCGGGTGCTCAGTCGATCGAAGAGGTAGAATGCGAAAGCCAGGGATC-AG
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGAAAGCCAGGGATCGA-
* * * * * *
35887530 CCCGATCCCCCCTACGTGTTGTTGATCCTACTACTGCAACCCTCGGTCTGATCTGATCTTAGACT
130 CCCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGATCTGATCTGATCTTAGACT
* * * * * *
35887595 GGGAATAAACT-TCATATGCCTAAGTCAACCCACGAAATGAGTGTACGGGCGCTGAGCCGACCAA
195 GGGAATGAACTCT-ATA-GCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCTGGCCAA
* * * * * *
35887659 AGAGGCATAATACGTAAGCCGGGGATCGGA-CCGGTCCCCTTCTACGTGCTGCC-AGTCCCGTTA
258 AGAGGCATAATGCGCAAGCCGGGGATC-GACCCGGTCCCCCTCTGCGTGCTGCCGA-TCCCGCTG
* * * * *
35887722 CCACAACCCTCGATCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCAC
321 CCATAACCTTAGGTCCG-TTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* ** * * *
35887787 GAAACGGGCGTGGGGGCGCTCAGCCAATTGGAGAGGAAGAATGTGCAAG-TCGGGGATCAGCCTG
385 GAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGAAGAATGCGCAAGCT-GGGGATCGGCC-G
* * * * * *
35887851 GTCCCCCCTACATGCTACCGAGCCTGCTGTCGCAAACGTCGGTCCAATCCAATCTTAGACTGGAA
448 GTCCCCCCTGCATGCTATCGATCCTGCTG-CGCAACCCTC-GTCCAGTCCAATCTTAGACTGGAA
* * *
35887916 ATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCTATGAAATGAGCG
511 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCG
35887981 TACGGGCGCTCAGCC
576 TACGGGCGCTCAGCC
35887996 GACCAGGGAG
Statistics
Matches: 1228, Mismatches: 209, Indels: 50
0.83 0.14 0.03
Matches are distributed among these distances:
864 1 0.00
865 27 0.02
866 360 0.29
867 536 0.44
868 301 0.25
869 3 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (863 bp):
ATCTTAGATTGGGAATGAACTTCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGAAAGCCAGGGATCGAC
CCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGATCTGATCTGATCTTAGACTG
GGAATGAACTCTATAGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCTGGCCAAAGA
GGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGATCCCGCTGCCATA
ACCTTAGGTCCGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
GGCGTGCGGGCGCTCAGCCGGTCGGAGAGGAAGAATGCGCAAGCTGGGGATCGGCCGGTCCCCCC
TGCATGCTATCGATCCTGCTGCGCAACCCTCGTCCAGTCCAATCTTAGACTGGAAATGAACTCCG
TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCGCT
CAGCCAACCGGAAAGGCATAATGCATAAGCCAGGGATCAACCCGATCCCCCTCTGCGTGCTACCG
ATCCCACTGTCGATCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTC
CGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAACCGGTCGGAGAGGTAGAATGC
GCAAGCCGGGGATCAGCCCGGTCCCCCTTACGTGCTGTCTATCCTACTGCTGGTCCTACTGGCAC
AACCCTCAGTCCAGTCCG
Found at i:35887455 original size:26 final size:26
Alignment explanation
Indices: 35887403--35887455 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
35887393 CCAGTCCGAT
** * **
35887403 CTTAGACTGGGAATGAACTTCTTATG
1 CTTAGACAAGGAATGAACTCCGCATG
35887429 CTTAGACAAGGAATGAACTCCGCATG
1 CTTAGACAAGGAATGAACTCCGCATG
35887455 C
1 C
35887456 GTAAGCCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGCATG
Found at i:35887944 original size:26 final size:26
Alignment explanation
Indices: 35887904--35887956 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35887894 CCAATCCAAT
35887904 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
35887930 CTTAGACTAGG-AATGAACTCCGTATG
1 CTTAGACT-GGAAATGAACTCCGTATG
35887956 C
1 C
35887957 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:35889989 original size:157 final size:155
Alignment explanation
Indices: 35889512--35890009 Score: 448
Period size: 158 Copynumber: 3.2 Consensus size: 155
35889502 CTTAAACTAG
* * * *
35889512 TAGACTGGGAATGAACTCCGTATGCGTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCG
1 TAGACT-GGAATGAACTCCATATGCATAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAACCG
* * * * * * *
35889577 ATCGAAGAGGCT-GAATGTGCATGCCAGGGATCGGCCCGGTCCCCTCTGTGTGCTATCGATCCTA
65 -CCAAAGAGG-TGGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCTCTGCGTGCTGT-GATCCTA
** *
35889641 CTATCAC-AACCATCGGTCTAGTCCAAACT
127 CTATCACAAACC-TCGGTCCGGTTCAAACT
* * * * * *
35889670 TAGACTGGCAATGAACTCTATATGCATAAGTCAACCCATGAAATGAGCGTACGGGCGCTGAGTCG
1 TAGACTGG-AATGAACTCCATATGCATAAGCCAACCCACGAAATGAGCGTACGGGCGCTCA-ACC
* *
35889735 GCCAAAG-GG-GGATAATGCGCAAGCC-GAGGATCGACCCAGTCCCCTCTGCGTGCTGTCAGTCC
64 GCCAAAGAGGTGG--AATGCGCAAGCCAG-GGATCGGCCCAGTCCCCTCTGCGTGCTGTGA-TCC
* * * * * ** **** *
35889797 CACTACCACAACCCTGGGTTCGACTGGGGCG
125 TACTATCACAAACCTCGGTCCGGTTCAAACT
* *
35889828 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAACCG
1 TAGAC-TGGAATGAACTCCATATGCATAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAACCG
* * *
35889893 CCAAAGAGGTGGAATGCACAAGCCAGGGATCGGCCCAGTCCCCCCTGCGTGCTGCTGATCCTGCT
65 CCAAAGAGGTGGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCTCTGCGTGCTG-TGATCCTACT
* * * *
35889958 GTCGCAAACCTCAGTCCGGTTCAATCT
129 ATCACAAACCTCGGTCCGGTTCAAACT
35889985 TAGACTGGGAATGAACTCCATATGC
1 TAGACT-GGAATGAACTCCATATGC
35890010 TTAGACTAGG
Statistics
Matches: 263, Mismatches: 63, Indels: 29
0.74 0.18 0.08
Matches are distributed among these distances:
156 2 0.01
157 91 0.35
158 160 0.61
159 10 0.04
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (155 bp):
TAGACTGGAATGAACTCCATATGCATAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAACCGC
CAAAGAGGTGGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCTCTGCGTGCTGTGATCCTACTAT
CACAAACCTCGGTCCGGTTCAAACT
Found at i:35890392 original size:26 final size:26
Alignment explanation
Indices: 35890363--35890415 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35890353 CCGGTCCAAT
35890363 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGA-TAGGGAATGAACTCCGTATG
*
35890389 CTTAGATATGGAATGAACTCCGTATG
1 CTTAGATAGGGAATGAACTCCGTATG
35890415 C
1 C
35890416 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGATAGGGAATGAACTCCGTATG
Found at i:35891552 original size:26 final size:26
Alignment explanation
Indices: 35891523--35891575 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35891513 CCGGTCTGAT
35891523 CTTAGACTGGGAATGAACTCTGTACG
1 CTTAGACTGGGAATGAACTCTGTACG
*
35891549 CTTAGACTGGGGATGAACTCTGTACG
1 CTTAGACTGGGAATGAACTCTGTACG
35891575 C
1 C
35891576 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTACG
Found at i:35891867 original size:26 final size:26
Alignment explanation
Indices: 35891838--35891890 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35891828 TCGGTCCGAT
35891838 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
** * *
35891864 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
35891890 C
1 C
35891891 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:35891899 original size:315 final size:317
Alignment explanation
Indices: 35891325--35891903 Score: 783
Period size: 315 Copynumber: 1.8 Consensus size: 317
35891315 CCCTCCGCAT
* *
35891325 GCTGTCGGTCCCGCTGTGACAACCCTCTATCCAGCTGGGGCTTAGACTTGGAATGAACTCCCTAT
1 GCTGTCGGTCCCGCTGTGACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTAT
* * * *
35891390 GCCTAAGCTAACCCACAAAACGGGCGTACGGGCGCTCAACCGGTCGAAGAGGTAGAATGCACAAG
66 CCCTAAGCCAACCCACAAAACGGACGTACGAGCGCTCAACCGGTCGAAGAGGTAGAATGCACAAG
** * * * *
35891455 CCGAGGATCGGTTCGGTTCCCCCTGTGTGCTACAGATCTTGCTACCGCAATCCTCAGTCCGGTCT
131 CCGAGGATCGGACCGGTTCCCCCTGTGTGCTACAGATCCTACTACCGCAAGCCTCAGTCCGGTCC
** *
35891520 GATCTTAGACTGGGAATGAACTCTGTACGCTTAGACTGGGGATGAACTCTGTACGCCAAAGTCAA
196 GATCTTAGACAAGGAATGAACTCCGTACGCTTAGACTGGGGATGAACTCTGTACGCCAAAGTCAA
35891585 CCCACGAAATGAACGTTCAGGGATCAGCTCGATCTCCCTCTGTGTGCTGTCGATCTC
261 CCCACGAAATGAACGTTCAGGGATCAGCTCGATCTCCCTCTGTGTGCTGTCGATCTC
* * *
35891642 GCTGTCGGTCCTGTTG-GCACAACCCTCGATCCCGCTGGGGCTTAGACATGGAATGAACTCCCTA
1 GCTGTCGGTCCCGCTGTG-ACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTA
** * * *
35891706 TCCCTAAGCCAA-CCATGAAACGGACGTCCGAGCGCTCAGCCGG-CTGGAGAGGTAGAATGCACA
65 TCCCTAAGCCAACCCACAAAACGGACGTACGAGCGCTCAACCGGTC-GAAGAGGTAGAATGCACA
* * * * * * *
35891769 AGTCGGGGATC-GACCGG-TCCCCCT-TACGTGCTACCGGTCCTACTACTGCAAGCCTCGGTTCG
129 AGCCGAGGATCGGACCGGTTCCCCCTGT--GTGCTACAGATCCTACTACCGCAAGCCTCAGTCCG
* * *
35891831 GTCCGATCTTAGACAAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAG
192 GTCCGATCTTAGACAAGGAATGAACTCCGTACGCTTAGACTGGGGATGAACTCTGTACGCCAAAG
35891896 TCAACCCA
257 TCAACCCA
35891904 TAAAACGAGC
Statistics
Matches: 225, Mismatches: 33, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
313 1 0.00
314 7 0.03
315 98 0.44
316 52 0.23
317 67 0.30
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (317 bp):
GCTGTCGGTCCCGCTGTGACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTAT
CCCTAAGCCAACCCACAAAACGGACGTACGAGCGCTCAACCGGTCGAAGAGGTAGAATGCACAAG
CCGAGGATCGGACCGGTTCCCCCTGTGTGCTACAGATCCTACTACCGCAAGCCTCAGTCCGGTCC
GATCTTAGACAAGGAATGAACTCCGTACGCTTAGACTGGGGATGAACTCTGTACGCCAAAGTCAA
CCCACGAAATGAACGTTCAGGGATCAGCTCGATCTCCCTCTGTGTGCTGTCGATCTC
Found at i:35891998 original size:12 final size:12
Alignment explanation
Indices: 35891977--35892022 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
35891967 CGATCCCCCC
35891977 CTGCCGGTCCCG
1 CTGCCGGTCCCG
* *
35891989 CTGTCGGTCCTG
1 CTGCCGGTCCCG
* *
35892001 CTGCCGATCTCG
1 CTGCCGGTCCCG
35892013 CTGCCGGTCC
1 CTGCCGGTCC
35892023 TACTACCACA
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.02, C:0.43, G:0.30, T:0.24
Consensus pattern (12 bp):
CTGCCGGTCCCG
Found at i:35892005 original size:24 final size:24
Alignment explanation
Indices: 35891977--35892023 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
35891967 CGATCCCCCC
* *
35891977 CTGCCGGTCCCGCTGTCGGTCCTG
1 CTGCCGATCCCGCTGCCGGTCCTG
*
35892001 CTGCCGATCTCGCTGCCGGTCCT
1 CTGCCGATCCCGCTGCCGGTCCT
35892024 ACTACCACAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.02, C:0.43, G:0.30, T:0.26
Consensus pattern (24 bp):
CTGCCGATCCCGCTGCCGGTCCTG
Found at i:35892323 original size:372 final size:370
Alignment explanation
Indices: 35891629--35892334 Score: 839
Period size: 372 Copynumber: 1.9 Consensus size: 370
35891619 TCCCTCTGTG
* * ** ** *
35891629 TGCTGTCGATCTCGCTGTCGGTCCTGTTGGCACAACCCTCGATCCCGCTGGGGCTTAGACATGGA
1 TGCTGCCGATCTCGCTGCCGGTCCTACTACCACAACCCTCGATCCCGCTAGGGCTTAGACATGGA
* ** *
35891694 ATGAACTCCCTATCCCTAAGCCAACCATGAAACGGACGTCCGAGCGCTCAGCCGGCTGGAGAGGT
66 ATGAACTCCCTATCACTAAGCCAACCATGAAAAAGACGTACGAGCGCTCAGCCGGCTGGAGAGGT
* * * * *
35891759 AGAATGCACAAGTCGGGGATCGACCGGTCCCCCTTACGTGCTACCGGTCCTACTACTGCAAGCCT
131 AGAATGCACAAGCCGGGGATCGACCGGTCCCCCCTACATGCTACCGATCCTACTACTGCAACCCT
* * * * *
35891824 CGGTTCGGTCCGATCTTAGACAAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTAT
196 CGGTCCGATCCGATCTTAGACAAGGAATGAACTCCATATGCTTAGACTGAGGATGAACTCCGTAT
* * * * *
35891889 GCCTAAGTCAACCCATAAAACGAGCGTACGGGCGCTCGTCTGGCCGAAGAGGTATAATGCGCAAG
261 GCCTAAGTCAACCCAGAAAACGAGCGTACAGGCGCTCGTCCGACCGAAGAGGCATAATGCGCAAG
*
35891954 TCAGGGATCAGGCCGATCCCCCCCTGCCGGTCCCGCTGTCGGTCC
326 CCAGGGATCAGGCCGATCCCCCCCTGCCGGTCCCGCTGTCGGTCC
* **
35891999 TGCTGCCGATCTCGCTGCCGGTCCTACTACCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGA
1 TGCTGCCGATCTCGCTGCCGGTCCTACTACCACAACCCTCGATCCCGCTAGGGCTTAGACATGGA
* ** * *
35892064 TTGAACTCTGTATGACTAAGCCAACCCATGAAATAAG-CGTACGGGCGCTCAGCCGG-TCGGAGA
66 ATGAACTCCCTATCACTAAGCCAA-CCATGAAA-AAGACGTACGAGCGCTCAGCCGGCT-GGAGA
** * ** * *
35892127 GGTAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCTGCT-GTCGCA
128 GGTAGAATGCACAAGCCGGGGATCGA-CCGGTCCCCCCTACATGCTACCGATCCTACTACT-GCA
* ** *
35892191 ACCCTCGGTCCGATCCGATCTTATACTGGGAATGAACTTCATATGCTTAGACTGAGGATGAACTC
191 ACCCTCGGTCCGATCCGATCTTAGACAAGGAATGAACTCCATATGCTTAGACTGAGGATGAACTC
* * * *
35892256 CGTATGCCTAGGTCAACCCAGGAAATGAGCGTGCAGGCGCTCAG-CCGACC-AGAGAGGCA-AGA
256 CGTATGCCTAAGTCAACCCAGAAAACGAGCGTACAGGCGCTC-GTCCGACCGA-AGAGGCATA-A
*
35892318 TGCGCAAGCCGGGGATC
318 TGCGCAAGCCAGGGATC
35892335 GAACGGGTGG
Statistics
Matches: 277, Mismatches: 51, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
370 75 0.27
371 56 0.20
372 145 0.52
373 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (370 bp):
TGCTGCCGATCTCGCTGCCGGTCCTACTACCACAACCCTCGATCCCGCTAGGGCTTAGACATGGA
ATGAACTCCCTATCACTAAGCCAACCATGAAAAAGACGTACGAGCGCTCAGCCGGCTGGAGAGGT
AGAATGCACAAGCCGGGGATCGACCGGTCCCCCCTACATGCTACCGATCCTACTACTGCAACCCT
CGGTCCGATCCGATCTTAGACAAGGAATGAACTCCATATGCTTAGACTGAGGATGAACTCCGTAT
GCCTAAGTCAACCCAGAAAACGAGCGTACAGGCGCTCGTCCGACCGAAGAGGCATAATGCGCAAG
CCAGGGATCAGGCCGATCCCCCCCTGCCGGTCCCGCTGTCGGTCC
Found at i:35892970 original size:26 final size:26
Alignment explanation
Indices: 35892931--35892983 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35892921 GGCTCAAAAT
35892931 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
35892957 CTTAGACATG-GAATGAACTCTGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
35892983 C
1 C
35892984 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:35893302 original size:26 final size:26
Alignment explanation
Indices: 35893273--35893325 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35893263 CCGATTCAAT
35893273 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
35893299 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
35893325 C
1 C
35893326 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:35893499 original size:26 final size:26
Alignment explanation
Indices: 35893470--35893521 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35893460 CGATCTAATA
35893470 TTAGAC-TGGGAATGAACTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
*
35893496 TTAGACATGGAATGAACTCTGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
35893522 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:35894504 original size:26 final size:26
Alignment explanation
Indices: 35894475--35894527 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35894465 CCCGTTTGAT
35894475 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
35894501 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
35894527 C
1 C
35894528 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:35894935 original size:159 final size:158
Alignment explanation
Indices: 35894646--35894978 Score: 416
Period size: 159 Copynumber: 2.1 Consensus size: 158
35894636 GCAGATCCCA
* * * *
35894646 CTATCGGTCCTACTGCCATAGCCCTCGGTTCGACTGGGGCTTAGACATGGAATGAACTCCGTATG
1 CTATCGGTCCTGCTGCCACAACCCTCGATTCGACTGGGGCTTAGACATGGAATGAACTCCGTATG
* * * * * * * *
35894711 CCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTGAGTCGATCGCAAAGGTAGAATGTGCAAGC
66 CCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGATAGCAAAGGCAGAATGCGCAAGC
* **
35894776 CGGGGATCGGCCCGGTCCCCCTCTGCGTG
131 CGGGGATCGACCAAGTCCCCC-CTGCGTG
* *
35894805 CTATCGGTCCCGCTGCCACAACCCTCGATTCGACTGGGGCTTAGGCATGGAATGAACTCCGTATG
1 CTATCGGTCCTGCTGCCACAACCCTCGATTCGACTGGGGCTTAGACATGGAATGAACTCCGTATG
* * * * *
35894870 CCTATGCCAACCCACGAAATAAGCGTGCGGGTGCTCAGCCAGCTAG-AGAGGCAGAATGCGCAAG
66 CCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCC-GATAGCAAAGGCAGAATGCGCAAG
*
35894934 CCGGGGATCGACCAAGTTCCCCCTGCGTG
130 CCGGGGATCGACCAAGTCCCCCCTGCGTG
* *
35894963 CTGTCGATCCTGCTGC
1 CTATCGGTCCTGCTGC
35894979 TGTAGCCCTT
Statistics
Matches: 147, Mismatches: 26, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
158 20 0.14
159 124 0.84
160 3 0.02
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (158 bp):
CTATCGGTCCTGCTGCCACAACCCTCGATTCGACTGGGGCTTAGACATGGAATGAACTCCGTATG
CCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGATAGCAAAGGCAGAATGCGCAAGC
CGGGGATCGACCAAGTCCCCCCTGCGTG
Found at i:35895051 original size:25 final size:26
Alignment explanation
Indices: 35895002--35895053 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
35894992 CCGGTTCGAT
*
35895002 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35895028 CTTAGATTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35895053 C
1 C
35895054 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35895563 original size:26 final size:26
Alignment explanation
Indices: 35895527--35895579 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35895517 TTGGTCTGAT
35895527 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
35895553 CTTAGGCTAGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
35895579 C
1 C
35895580 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:35895880 original size:527 final size:524
Alignment explanation
Indices: 35893656--35896145 Score: 2248
Period size: 527 Copynumber: 4.8 Consensus size: 524
35893646 TCTTACATTG
* * * * * * *
35893656 GGAATGAACTCCATATGCATAAGTTAACCCATGAAACGAGCGTGTGGGGGCTGA-ACTGGCCGA-
1 GGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCTTGCGGGCGCTGAGTC-GG-CGAG
* * * * ** *
35893719 AGAGGCATAATGCGCAAGCCGAGGATAGCCCGGTCGCCCTTTGCATG-T-TACCAGTCCCGCTGC
64 AGAGGCATAATGCGCAAGCCG-GGATCGCCCGATCCCCCTCTGTGTGCTGT-CGA-TCCCGCTGC
* *
35893782 CACAACCCTCGATCCAACTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCTAACCCACG
126 CACAACCCTCG-TCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACG
* ** * * * * *
35893847 AAATGGGTGTGCGGGCGTTCAACCGACCGGAGAGGTGGAATGCGCAAGCCGGGGATCTACTTGAT
190 AAACGGACGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCTACTCGAT
* * *** * *
35893912 CCCCCTTATGTGCTGTTGATCCTACTACCACAACCCTCGGACTT--GTCTGATCTTAGATTGGGA
255 CCCCCCTACGTGCTACCGATCCTACTACCGCAACCCTC-GA-TTCGGTCTGATCTTAGACTGGGA
* * *
35893975 ATGAACTCCATATGCTTAGACTAAGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCA
318 ATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
* * *
35894040 TACGGGCGCTCAGCCGGCCGGAGAGGCCAGCTGGAGAGGCATAATGTGTAAGTCAGGGATCAGCC
383 TACGGGCACTCAGCCGGCCGGAGAGGCCAGCTGGAGAGGCATAATGCGTAAGTCAGGGATCTGCC
* * ** ** * * ** *
35894105 CGATTCCCCTCTACGTGCTATCGATCCTGCTACCGGTCCTGCTGCCACAGGCCTTGGTCTGGCTG
448 TGATCCCCCTCTACGTGCTGCCGATCCCACTACCGGTCCTACTGCCACAGCCCTCAGTCTGGCTA
*
35894170 GGGCCTAGACAT
513 GGGCTTAGACAT
* * * * ** *
35894182 GCAATGAACTCTGTACGCCTAAGCCAACCCACAAAACGAG-TGTGCGGGCGCTGAGTCAGCCG-G
1 GGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCT-TGCGGGCGCTGAGTC-GGCGAG
* * * * * *
35894245 AGAGGTATAATGCACAAG-C----T-G---G-T--CTCGCTGTGTGCTGTCGGTCCCGCTACCAC
64 AGAGGCATAATGCGCAAGCCGGGATCGCCCGATCCCCCTCTGTGTGCTGTCGATCCCGCTGCCAC
* * *
35894298 AACCCTCGGTCCGGCT-GGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCTAACCCACAAAA
129 AACCCTC-GTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAA
* * * ** * * * * * * *
35894362 AGGTCGTACGGGCATTCAGTCGGTCAGAGAGGTAGAATACGTAAGCCGGGGATCT-TTCTAGTCC
193 CGGACGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCTACTCGA-TCC
* * * * * * * * * *
35894426 CCCCTGCATGCTACCGATCCTGCTACCGTAACCTTTGATCCCGTTTGATCTTAGACTGAGAATGA
257 CCCCTACGTGCTACCGATCCTACTACCGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGA
* * * *
35894491 ACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAACTCAACCCATGAAACGAGCATATG
322 ACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACG
* ** * * * * * * * *
35894556 GGCACTTAGTTGGTCGGAAAGGCCGGCTGGAGAGGCATAACGTGCAAGCCGGGGATCTGCCTGAT
387 GGCACTCAGCCGGCCGGAGAGGCCAGCTGGAGAGGCATAATGCGTAAGTCAGGGATCTGCCTGAT
** * * * * * *
35894621 CCCCCTCTGTGTGCTGCAGATCCCACTATCGGTCCTACTGCCATAGCCCTCGGT-TCGACTGGGG
452 CCCCCTCTACGTGCTGCCGATCCCACTACCGGTCCTACTGCCACAGCCCTCAGTCT-GGCTAGGG
35894685 CTTAGACAT
516 CTTAGACAT
* *
35894694 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-TGTGCGGGCGCTGAGTCGATCGCA
1 GGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCT-TGCGGGCGCTGAGTCG-GCG-A
* * * * * * *
35894758 -A-AGGTAGAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGGTCCCGCTGC
63 GAGAGGCATAATGCGCAAGCC-GGGATC-GCCCGATCCCCCTCTGTGTGCTGTCGATCCCGCTGC
* * * * *
35894821 CACAACCCTCGATTCGACTGGGGCTTAGGCATGGAATGAACTCCGTATGCCTATGCCAACCCACG
126 CACAACCCTCG-TCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACG
** * * ** * * *
35894886 AAA-TAAGCGTGCGGGTGCTCAGCCAGCTAGAGAGGCAGAATGCGCAAGCCGGGGATCGAC-CAA
190 AAACGGA-CGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCTACTCGA
* * ** * * * * * * * *
35894949 GTTCCCCCTGCGTGCTGTCGATCCTGCTGCTGTAGCCCTTGGTCCGGT-TCGATCTTAGACTGGG
254 -TCCCCCCTACGTGCTACCGATCCTACTACCGCAACCCTCGATTCGGTCT-GATCTTAGACTGGG
* * *
35895013 AATGAACTCTGTATGCTTAGA-TTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
317 AATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
* ** * *
35895077 GTACGGGCACTCAGTCGGTTGGAGAGGCCAGCTGGAGAGGCATAATGTGCAAGTCAGGGATCAAT
382 GTACGGGCACTCAGCCGGCCGGAGAGGCCAGCTGGAGAGGCATAATGCGTAAGTCAGGGATC--T
* * *** * * * * ** *
35895142 -CC-GATCCCCCTCTATGTGCTGCTGATCTTGCTGCCAGTCTTGCTGTAATAGCCCTCAGTCTGG
445 GCCTGATCCCCCTCTACGTGCTGCCGATCCCACTACCGGTCCTACTGCCACAGCCCTCAGTCTGG
*
35895205 CTAGCGCTT-GACAT
510 CTAGGGCTTAGACAT
* * * * ** * *
35895219 GGAATGAACTCTGTATGCCTAAGCTAACCCATGAAACGACCGTACGGGCATTGAGTTGATCG-GA
1 GGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCTTGCGGGCGCTGAGTCG-GCGAGA
* * *
35895283 GAGGCATAATGCGCAAGCAAGGGATCAGCCCGATCCCCCTCTATGTGCTGTC-AGTCTCGCTGCC
65 GAGGCATAATGCGCAAGC-CGGGATC-GCCCGATCCCCCTCTGTGTGCTGTCGA-TCCCGCTGCC
**
35895347 ACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGA
127 ACAACCCTC-GTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGA
* * * * * *
35895412 AACGGACGTGTGGGCACTCAACCGGCCGGAGAGGTAGAATGCACAAGCTGGGGATCTTCTCGATC
191 AACGGACGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCTACTCGATC
* * * *
35895477 CCCCCTACGTGCTACCGAGCCTACTATCGCAACCCTCGATTTGGTCTGATCTTAGACTAGGAATG
256 CCCCCTACGTGCTACCGATCCTACTACCGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATG
* * *
35895542 AACTCCGTATGCTTAGGCTAGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTAC
321 AACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTAC
** * * * * * *
35895607 GGGTGCTCAACCAGCCAGAGAGGCC-GACTGGAAAGGCATAATGCATAAG-CTGAGGATCTGCCT
386 GGGCACTCAGCCGGCCGGAGAGGCCAG-CTGGAGAGGCATAATGCGTAAGTCAG-GGATCTGCCT
* * ** *
35895670 GGTCCCCCTCTGCGTGCTGCCGATCCCACTATTGGTCCTACTGCCACAGCCCTCAGTTTGGCTAG
449 GATCCCCCTCTACGTGCTGCCGATCCCACTACCGGTCCTACTGCCACAGCCCTCAGTCTGGCTAG
35895735 GGCTTAGACAT
514 GGCTTAGACAT
* * * * *
35895746 GGAATGAACTCCATATGCCTAAGCTAACCAATGAAACGAGCTTACGGGCACTAAGTCGGCGAGAG
1 GGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCTTGCGGGCGCTGAGTCGGCGAGAG
* * * *
35895811 AGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCTTTGTGTGCTGCCGATCCTGCTACCAC
66 AGGCATAATGCGCAAGCC-GGGATCG-CCCGATCCCCCTCTGTGTGCTGTCGATCCCGCTGCCAC
* * * *
35895876 AACCCTCGGTCTGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
129 AACCCTC-GTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAA
* * * * ** ** * *
35895941 CGGGCGTGCGGTCGCTCAGTCGGCCGAAGAGGTAGAATGCGCAAGCTAGGGATCGGCCCGGTCCC
193 CGGACGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCTACTCGATCCC
* ** * *
35896006 CCCTTCGTGC-AGCCGATCCTACTGTCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGA
258 CCCTACGTGCTA-CCGATCCTACTACCGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGA
* * * **
35896070 ACCCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTG
322 ACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACG
*
35896135 GGCGCTCAGCC
387 GGCACTCAGCC
35896146 TACCAAAGAG
Statistics
Matches: 1594, Mismatches: 315, Indels: 109
0.79 0.16 0.05
Matches are distributed among these distances:
510 1 0.00
511 6 0.00
512 371 0.23
513 31 0.02
514 3 0.00
515 2 0.00
516 1 0.00
518 1 0.00
519 1 0.00
520 2 0.00
523 1 0.00
524 3 0.00
525 278 0.17
526 387 0.24
527 504 0.32
528 2 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (524 bp):
GGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCTTGCGGGCGCTGAGTCGGCGAGAG
AGGCATAATGCGCAAGCCGGGATCGCCCGATCCCCCTCTGTGTGCTGTCGATCCCGCTGCCACAA
CCCTCGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGG
ACGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCTACTCGATCCCCCC
TACGTGCTACCGATCCTACTACCGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTC
CGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCA
CTCAGCCGGCCGGAGAGGCCAGCTGGAGAGGCATAATGCGTAAGTCAGGGATCTGCCTGATCCCC
CTCTACGTGCTGCCGATCCCACTACCGGTCCTACTGCCACAGCCCTCAGTCTGGCTAGGGCTTAG
ACAT
Found at i:35896006 original size:159 final size:158
Alignment explanation
Indices: 35895734--35896043 Score: 406
Period size: 159 Copynumber: 2.0 Consensus size: 158
35895724 AGTTTGGCTA
* *
35895734 GGGCTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCAATGAAACGAGCTTACGGGCACTA
1 GGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCAATGAAACGAGCGTACGGGCACTA
* * * *
35895799 AGTCGGCGAGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCTTTGTGTGCTGCCGA
66 AGTCGGCGAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTT-CGTGCAGCCGA
*
35895864 TCCTGCTACCACAACCCTCGGTCTGATTG
130 TCCTACTACCACAACCCTCGGTCTGATTG
* * * * * * *
35895893 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGTCGCTC
1 GGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCAATGAAACGAGCGTACGGGCACTA
* * * *
35895958 AGTCGGCCGA-AGAGGTAGAATGCGCAAGCTAGGGATCGGCCCGGTCCCCCCTTCGTGCAGCCGA
66 AGTCGG-CGAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTTCGTGCAGCCGA
** *
35896022 TCCTACTGTCGCAACCCTCGGT
130 TCCTACTACCACAACCCTCGGT
35896044 TCGGTCCGAT
Statistics
Matches: 129, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
158 27 0.21
159 99 0.77
160 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCAATGAAACGAGCGTACGGGCACTA
AGTCGGCGAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTTCGTGCAGCCGAT
CCTACTACCACAACCCTCGGTCTGATTG
Found at i:35896095 original size:26 final size:26
Alignment explanation
Indices: 35896054--35896106 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35896044 TCGGTCCGAT
35896054 CTTAGACTGGGAATGAACCCCATATG
1 CTTAGACTGGGAATGAACCCCATATG
* *
35896080 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACCCCATATG
35896106 C
1 C
35896107 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCATATG
Found at i:35897816 original size:26 final size:27
Alignment explanation
Indices: 35897769--35897822 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
35897759 GTTGACTTAG
35897769 GCATACGGAGTTTCATCCCCAGTCTAA
1 GCATACGGAGTTTCATCCCCAGTCTAA
* *
35897796 GCATATGGAG-TTCATTCCCAGTCTAA
1 GCATACGGAGTTTCATCCCCAGTCTAA
35897822 G
1 G
35897823 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 16 0.64
27 9 0.36
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (27 bp):
GCATACGGAGTTTCATCCCCAGTCTAA
Found at i:35898979 original size:26 final size:26
Alignment explanation
Indices: 35898949--35899001 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35898939 GTTGACTTAG
*
35898949 GCATACGGAGTTCA-TCGCCAGTCTAA
1 GCATACGAAGTTCATTC-CCAGTCTAA
35898975 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
35899001 G
1 G
35899002 ATCTACTCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:35899861 original size:26 final size:26
Alignment explanation
Indices: 35899831--35899881 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
35899821 TGACTTAGGA
35899831 ATACAGAGTTCA-TCCCTAGTCTAAGC
1 ATACAGAGTTCATTCCC-AGTCTAAGC
35899857 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
35899882 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:35900368 original size:26 final size:26
Alignment explanation
Indices: 35900332--35900381 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
35900322 TGGCTTAGGG
*
35900332 ATACGGAGTTCATT-CCATGTCTAACC
1 ATACAGAGTTCATTCCCA-GTCTAACC
35900358 ATACAGAGTTCATTCCCAGTCTAA
1 ATACAGAGTTCATTCCCAGTCTAA
35900382 GATTTTGAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAACC
Found at i:35901430 original size:26 final size:26
Alignment explanation
Indices: 35901394--35901444 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
35901384 TGACTTAGGC
35901394 ATACGGAGTTCATTC-CTAGTCTAAGT
1 ATACGGAGTTCATTCTC-AGTCTAAGT
35901420 ATACGGAGTTCATTCTCAGTCTAAG
1 ATACGGAGTTCATTCTCAGTCTAAG
35901445 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (26 bp):
ATACGGAGTTCATTCTCAGTCTAAGT
Found at i:35901719 original size:159 final size:158
Alignment explanation
Indices: 35901469--35901784 Score: 359
Period size: 159 Copynumber: 2.0 Consensus size: 158
35901459 AGGCTTGCGA
* *
35901469 CAGTAGGATCGACAGCACGCAGGAGGGATCGGGCTGATCCCCGACTTACGCATTCTCCCTCTCCG
1 CAGTAGGACCGACAGCACGCAGGAGGGATCGGGCTGATCCCCGACTTACGCATTATCCCTCTCCG
* ** * * * * *
35901534 ATCGGCTGAGTGCCTGCACGCCCGTTTCGTGCTTTGGTTTAGGCATAGGGAGTTCATTCCATGTC
66 ACCGGCTGAGCACCCGCACGCCCGTTTCGAGCGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* **
35901599 TAAGCCCCAGTCGGACTGAGGGTTGTGG
131 TAAGCCCCAGTCAGACCAAGGGTTGTGG
* * * * *
35901627 CAGTGGGACCGACAGCACGCAGAGGGGGATCGGG-TCGATCCCCGGCTTACGTATTATGCCTCTC
1 CAGTAGGACCGACAGCACGCAG-GAGGGATCGGGCT-GATCCCCGACTTACGCATTATCCCTCTC
* * *
35901691 CGACCGGTTTG-GCACCCGCACAG-TCGTTTCGAGGGTTGGCTTAGGCATACGGAGTTCATTCCA
64 CGACCGG-CTGAGCACCCGCAC-GCCCGTTTCGAGCGTTGGCTTAGGCATACGGAGTTCATTCCA
* * *
35901754 TGTTTCATCCCCAGTCAGACCAAGGGTTGTG
127 TGTCTAAGCCCCAGTCAGACCAAGGGTTGTG
35901785 CTAGCAGGAC
Statistics
Matches: 130, Mismatches: 24, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
158 21 0.16
159 106 0.82
160 3 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
CAGTAGGACCGACAGCACGCAGGAGGGATCGGGCTGATCCCCGACTTACGCATTATCCCTCTCCG
ACCGGCTGAGCACCCGCACGCCCGTTTCGAGCGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGCCCCAGTCAGACCAAGGGTTGTGG
Found at i:35901948 original size:26 final size:25
Alignment explanation
Indices: 35901919--35901970 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
35901909 ATTGACTTAG
*
35901919 GCATACAGAGTTTATCTCAAGTCTAA
1 GCATACAGAGTTCAT-TCAAGTCTAA
* *
35901945 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCAAGTCTAA
35901970 G
1 G
35901971 ATTGGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCAAGTCTAA
Found at i:35902263 original size:527 final size:524
Alignment explanation
Indices: 35901296--35902275 Score: 1202
Period size: 526 Copynumber: 1.9 Consensus size: 524
35901286 CACGTAGAGA
* * * * *
35901296 GGGATCGGGCTGATCCCTTGCTTACGTATTATGCCTCTTCGATCGGCCTCTCCGGTCGGTTGAGT
1 GGGATCGGGCTGATCCCTGGCTTACGCATTATGCCTCTTCGATCGGCCTCTCCGGTCAGCTGAGC
* * ** * * *
35901361 GCCCGTACACTCATTTTATGTGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGTATACGG
66 ACCCGTACACTCATTTCATGCATTGACTTAGGCATACAGAGTTCATTCCAAGTCTAAGCATACGG
*
35901426 AGTTCATTCTCAGTCTAAGATCAGACCGGATCGAGGCTTGCGACAGTAGGATCGACAGCACGCAG
131 AGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGCTTGCGACAGTAGGATCGACAGCACGCAG
* * ** **
35901491 GAGGGATCGGGCTGATCCCCGACTTACGCATTCTCCCTCTCCGATCGGCTGAGTGCCTGCACGCC
196 GAGGGATCGGGCTGATCCCCGACTTACGCATTCTCCCTCTCCGACCGGCTGAGCGCCCACACAAC
* * * * * * *
35901556 CGTTTCGTGCTTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGG
261 CGTTTCGTGCGTTGGCTAAGGCATAAGGAGTTCATTCCATGTCTAAGCACCAGTCAGACCGAGGG
* * *
35901621 TTGTGGCAGTGGGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTACGTATTATGC
326 TTGTGGCAGTAGGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGACTTACGCATTATGC
* * *
35901686 CTCTCCGACCGGTTTGGCACCCGCACAGTCGTTTCGAGGGTTGGCTTAGGCATACGGAGTTCATT
391 CTCT-C--CCGGTTTGGCACCCACACACTCGTTTCGAGGGTTGACTTAGGCATACGGAGTTCATT
35901751 CCATGTTTCATCCCCAGTCAGACCAAGGGTTGTGCTAGCAGGACAGGTAGCGGGATCAGTAGCAC
453 CCATGTTTCATCCCCAGTCAGACCAAGGGTTGTGCTAGCAGGACAGGTAGCGGGATCAGTAGCAC
35901816 GCCGGGG
518 GCCGGGG
* * * * * *
35901823 GGGATTGGGCTGATCCCTGGCTTATGCATTATGCCTTTTCCGCT-GGCCTTTCTGGTCAGCTGAG
1 GGGATCGGGCTGATCCCTGGCTTACGCATTATGCCTCTT-CGATCGGCCTCTCCGGTCAGCTGAG
* * *
35901887 CACCCGTACGCTCGTTTCATGCATTGACTTAGGCATACAGAGTTTA-TCTCAAGTCTAAGCATAC
65 CACCCGTACACTCATTTCATGCATTGACTTAGGCATACAGAGTTCATTC-CAAGTCTAAGCATAC
** * * * ** *
35901951 GGAGTTCATTC-CAGTCTAAGATTGGATCGGACCGAGGGTTGTGACAGTAGGATCGGTAGCATGC
129 GGAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGCTTGCGACAGTAGGATCGACAGCACGC
* * * * * *
35902015 AGGGGGGATCGGG-TCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACAC
194 AGGAGGGATCGGGCT-GATCCCCGACTTACGCATTCTCCCTCTCCGACCGGCTGAGCGCCCACAC
* ** * *
35902079 AACCTTTTTTTGGGTTGGCTAAGGCATAAGGAGTTCATTCCATGTCTAAGCACTAGTCAGACCGA
258 AACCGTTTCGTGCGTTGGCTAAGGCATAAGGAGTTCATTCCATGTCTAAGCACCAGTCAGACCGA
* * *
35902144 GGGTTGTGGCAGTAGGACC-AGTAGCACGCAGAGGGGGATCGGGTTGATTCCCCGACTTGCGCAT
323 GGGTTGTGGCAGTAGGACCGA-CAGCACGCAGAGGGGGATCGGGTCGA-TCCCCGACTTACGCAT
*
35902208 TATGCCTCT-CCGG-TTGGCCTAATGCCCACACACTCGTTT-TATGGGTTGACTTAGGCATACGG
386 TATGCCTCTCCCGGTTTGG-C--A--CCCACACACTCGTTTCGA-GGGTTGACTTAGGCATACGG
35902270 AGTTCA
445 AGTTCA
35902276 CTCCTAGTTT
Statistics
Matches: 378, Mismatches: 64, Indels: 22
0.81 0.14 0.05
Matches are distributed among these distances:
522 4 0.01
523 5 0.01
525 3 0.01
526 192 0.51
527 171 0.45
528 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (524 bp):
GGGATCGGGCTGATCCCTGGCTTACGCATTATGCCTCTTCGATCGGCCTCTCCGGTCAGCTGAGC
ACCCGTACACTCATTTCATGCATTGACTTAGGCATACAGAGTTCATTCCAAGTCTAAGCATACGG
AGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGCTTGCGACAGTAGGATCGACAGCACGCAG
GAGGGATCGGGCTGATCCCCGACTTACGCATTCTCCCTCTCCGACCGGCTGAGCGCCCACACAAC
CGTTTCGTGCGTTGGCTAAGGCATAAGGAGTTCATTCCATGTCTAAGCACCAGTCAGACCGAGGG
TTGTGGCAGTAGGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGACTTACGCATTATGC
CTCTCCCGGTTTGGCACCCACACACTCGTTTCGAGGGTTGACTTAGGCATACGGAGTTCATTCCA
TGTTTCATCCCCAGTCAGACCAAGGGTTGTGCTAGCAGGACAGGTAGCGGGATCAGTAGCACGCC
GGGG
Found at i:35902609 original size:318 final size:317
Alignment explanation
Indices: 35901945--35902803 Score: 980
Period size: 318 Copynumber: 2.7 Consensus size: 317
35901935 TCAAGTCTAA
* * * **
35901945 GCATACGGAGTTCATTCCAGTCTAAGATTGGATCGGACCGAGGGTTGTGACAGTAGGATCGGTAG
1 GCATACGGAGTTCATTCTAGTCTAAGATCGGATCGGACCGAGGGTTGTGACAGCAGGATCGACAG
* * *
35902010 CATGCA-GGGGGGA-TCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
66 CACGCAGGGGGGGACT-GGGTCGATCCCTGGCTTGCGCATTTTGCCTCTCCGGCCGGCTAAGCG-
* * * * * *
35902073 CCACACAACCTTTTT-TTGGGTTGGCTAAGGCATAAGGAGTTCATTCCATGTCTAAGCACTAG-T
129 CC-CGCAAGCTTTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCT
* * * * * * * **
35902136 CAGACCGAGGGTTGTGGCAGTAGGACCAGTAGCACGCAGAGGGGGATCGGGTTGATTCCCCGACT
193 -GGACCGAGGGTTGTGGCAGTAGGATCGGCAGCACGCAGAGAGGGACCAGGCCGATTCCCCGACT
*** * * * *
35902201 TGCGCATTATGCCTCTCCGGTTGGCCTAATGCCCACACACTCGTTTTATGGGTTGACTTAG
257 TGCGCATTATGCCTCTCCGACCGGCCTAACGCCCACACACTCATTTCATGGGTTAACTTAG
* * *
35902262 GCATACGGAGTTCACTCCTAGTTTAAGATCGGATCGGACCGAGGGTTGTGACAGCAAGATCGACA
1 GCATACGGAGTTCA-TTCTAGTCTAAGATCGGATCGGACCGAGGGTTGTGACAGCAGGATCGACA
* * * *
35902327 GTACGTAGGGGGGGACTGGG-CTGATCCCCGGCTTGCGCATTTTGCCTCTCCGGCTGGCTAAGCG
65 GCACGCAGGGGGGGACTGGGTC-GATCCCTGGCTTGCGCATTTTGCCTCTCCGGCCGGCTAAGCG
* * * * *
35902391 CCCGCATGCTTGTTTCGTGGGTTGGCTTAGGCATACGAAGTTTATTCCATGTCTAGGCCCCAGCT
129 CCCGCAAGCTT-TTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCT
* * *
35902456 GGGCCGAGGGTTGTGGCAGTAGGATCGGCAGCACGTAGCGAGGGACCAGGCCGA-TCCCCGACTT
193 GGACCGAGGGTTGTGGCAGTAGGATCGGCAGCACGCAGAGAGGGACCAGGCCGATTCCCCGACTT
* * * *
35902520 GCGCATTATGCCTCTCTGACCGG-CTCAGCGCCCGCACGCTCATTTCATGGGTTAACTTAG
258 GCGCATTATGCCTCTCCGACCGGCCT-AACGCCCACACACTCATTTCATGGGTTAACTTAG
* * * *
35902580 GCATACGGAGTTCATTGCTAGTCTAAGATCGGATCAGATCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATT-CTAGTCTAAGATCGGATCGGACCGAGGGTTGTGACAGCAGGATCGACA
* * * * * *
35902645 GCACACAGGGGGGGTC-GGGTCGATCCCTGGCTTGCGTATTTTGCCTCTCTGACCGGCTAAGTGC
65 GCACGCAGGGGGGGACTGGGTCGATCCCTGGCTTGCGCATTTTGCCTCTCCGGCCGGCTAAGCGC
* * *
35902709 CCGCACG-TTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAACT
130 CCGCAAGCTT--TTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCT
**
35902773 GGACCGAGGGTTGTGGCAACAGGATCGGCAG
193 GGACCGAGGGTTGTGGCAGTAGGATCGGCAG
35902804 TAGGATCAAT
Statistics
Matches: 455, Mismatches: 76, Indels: 22
0.82 0.14 0.04
Matches are distributed among these distances:
316 2 0.00
317 145 0.32
318 177 0.39
319 129 0.28
320 2 0.00
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.24
Consensus pattern (317 bp):
GCATACGGAGTTCATTCTAGTCTAAGATCGGATCGGACCGAGGGTTGTGACAGCAGGATCGACAG
CACGCAGGGGGGGACTGGGTCGATCCCTGGCTTGCGCATTTTGCCTCTCCGGCCGGCTAAGCGCC
CGCAAGCTTTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCTGGA
CCGAGGGTTGTGGCAGTAGGATCGGCAGCACGCAGAGAGGGACCAGGCCGATTCCCCGACTTGCG
CATTATGCCTCTCCGACCGGCCTAACGCCCACACACTCATTTCATGGGTTAACTTAG
Found at i:35902729 original size:158 final size:157
Alignment explanation
Indices: 35901945--35902799 Score: 729
Period size: 159 Copynumber: 5.4 Consensus size: 157
35901935 TCAAGTCTAA
* * **
35901945 GCATACGGAGTTCATTCCAGTCTAAGATTGGATCGGACCGAGGGTTGTGACAGTAGGATCGGTAG
1 GCATACGGAGTTCATTCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGTAGGATCGACAG
* * * *
35902010 CATGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCC
66 CACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTAAGCGCCC
* * * ** *
35902075 ACACAAC-CTTTTTTTGGGTTGGCTAAG
131 GCAC-GCTCATTTCATGGGTTGGCTTAG
* * * *
35902102 GCATAAGGAGTTCATTCCATGTCTAAGCA-C-TAGTCAGACCGAGGGTTGTGGCAGTAGGA-CCA
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCGGA-TCGGACCGAGGGTTGTGGCAGTAGGATCGA
* * * **
35902164 GTAGCACGCAGAGGGGGATCGGGTTGATTCCCCGACTTGCGCATTATGCCTCTCCGGTTGGCCTA
63 -CAGCACGCAG-GGGGGATCGGGTCGA-TCCCCGGCTTGCGCATTATGCCTCTCCGGCCGG-CTA
* * * * * *
35902229 A-TGCCCACACACTCGTTTTATGGGTTGACTTAG
124 AGCGCCCGCACGCTCATTTCATGGGTTGGCTTAG
* * * * *
35902262 GCATACGGAGTTCACTCCTAGTTTAAGATCGGATCGGACCGAGGGTTGTGACAGCAAGATCGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGTAGGATCGACA
* * * *
35902327 GTACGTAGGGGGGGA-CTGGG-CTGATCCCCGGCTTGCGCATTTTGCCTCTCCGGCTGGCTAAGC
65 GCACGCA-GGGGGGATC-GGGTC-GATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTAAGC
* ** *
35902390 GCCCGCATGCTTGTTTCGTGGGTTGGCTTAG
127 GCCCGCACGCTCATTTCATGGGTTGGCTTAG
* * ** ** * * *
35902421 GCATACGAAGTTTATTCCATGTCT-AGGCCCCAGCTGGGCCGAGGGTTGTGGCAGTAGGATCGGC
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGGATC-GGACCGAGGGTTGTGGCAGTAGGATCGAC
* * * * * * * * *
35902485 AGCACGTAGCGAGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCTGACCGGCTCAGCG
64 AGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTAAGCG
**
35902550 CCCGCACGCTCATTTCATGGGTTAACTTAG
128 CCCGCACGCTCATTTCATGGGTTGGCTTAG
* * * * *
35902580 GCATACGGAGTTCATTGCTAGTCTAAGATCGGATCAGATCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGTAGGATCGACA
* * * * * * * *
35902645 GCACACAGGGGGGGTCGGGTCGATCCCTGGCTTGCGTATTTTGCCTCTCTGACCGGCTAAGTGCC
65 GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTAAGCGCC
* *
35902710 CGCACGTTCATTTCGTGGGTTGGCTTAG
130 CGCACGCTCATTTCATGGGTTGGCTTAG
* * ** * **
35902738 GCATATGGAGTTCATTCCATGTCTAAG-CCCCAACTGGACCGAGGGTTGTGGCAACAGGATCG
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGGATC-GGACCGAGGGTTGTGGCAGTAGGATCG
35902800 GCAGTAGGAT
Statistics
Matches: 559, Mismatches: 114, Indels: 49
0.77 0.16 0.07
Matches are distributed among these distances:
157 25 0.04
158 166 0.30
159 237 0.42
160 123 0.22
161 8 0.01
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGTAGGATCGACAG
CACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTAAGCGCCC
GCACGCTCATTTCATGGGTTGGCTTAG
Found at i:35903631 original size:26 final size:26
Alignment explanation
Indices: 35903581--35903633 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35903571 GTTGACTTAG
* *
35903581 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAATCTAA
* *
35903607 GCATAAGGAGTTCATTCTCAATCTAA
1 GCATAAGGAGTTCATCCCCAATCTAA
35903633 G
1 G
35903634 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAATCTAA
Found at i:35903960 original size:159 final size:158
Alignment explanation
Indices: 35903607--35904099 Score: 502
Period size: 159 Copynumber: 3.1 Consensus size: 158
35903597 CCCAGTCTAA
* * * * *
35903607 GCATAAGGAGTTCATTCTCAATCTAAGATCAGACCGGACTGAGGGTTGCAGC-ACTAGGATCGGT
1 GCATACGGAGTTCATTCCCATTCTAAGATCAGACCGGACTGAGGGTTGCAGCTACGA-GATCGAT
* * * **
35903671 AGCACGCAGGGGGGA-CCGATCGATCTTCGGCTTACGCATTCTGCCT-TTCCGGCCGACTGAGCA
65 AGCACGCAGGGGGGATCGGATCGATCCTCGGCTTGCGCATTCTGCCTCTT-CGGCCGACTGAGTG
*
35903734 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** *
35903764 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGCAGCTACGAGACCGA
1 GCATACGGAGTTCATTCCCAT-TCTAAG-ATCAGACCGGACTGAGGGTTGCAGCTACGAGATCGA
* * ** * * *
35903827 CAGCACGCAGAGGGTGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCCAACTCAGT
64 TAGCACGCAG-GGGGGATCGGATCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGACTGAGT
* * *
35903892 GCCCGCACGCTCGTTTCATGGTTTGACTTAT
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
35903923 GCATACGAAGTTCATTCCCATTGTAAGATCAGACCGGAC-GAAGGGTTGTGACAG-TA-G-GATC
1 GCATACGGAGTTCATTCCCATTCTAAGATCAGACCGGACTG-AGGG-T-TG-CAGCTACGAGATC
* * ** * *
35903984 GATAGCACGCAGGGAGGGATC-GATTCAATCCCCTACTTGCGCATTCTGCCTCTCCGGTCGACTG
62 GATAGCACGCAGGG-GGGATCGGA-TCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGACTG
* *
35904048 AGTGCCCGCACACTCATTTCATGGGTTGGCTTAG
125 AGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
35904082 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
35904100 AGTATAAGCA
Statistics
Matches: 273, Mismatches: 49, Indels: 26
0.78 0.14 0.07
Matches are distributed among these distances:
156 2 0.01
157 53 0.19
158 18 0.07
159 185 0.68
160 8 0.03
161 4 0.01
162 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCATTCTAAGATCAGACCGGACTGAGGGTTGCAGCTACGAGATCGATA
GCACGCAGGGGGGATCGGATCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGACTGAGTGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:35904111 original size:25 final size:26
Alignment explanation
Indices: 35904082--35904133 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
35904072 GTTGGCTTAG
35904082 GCATACGGAGTTCATT-CCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
35904107 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
35904133 G
1 G
35904134 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:35904842 original size:26 final size:26
Alignment explanation
Indices: 35904802--35904854 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35904792 GTTGACTTAG
*
35904802 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGGTCATCCCCAGTCTAA
* **
35904828 GCATATGGAGGTCATTTCCAGTCTAA
1 GCATACGGAGGTCATCCCCAGTCTAA
35904854 G
1 G
35904855 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGGTCATCCCCAGTCTAA
Found at i:35905132 original size:158 final size:154
Alignment explanation
Indices: 35904828--35905231 Score: 373
Period size: 158 Copynumber: 2.6 Consensus size: 154
35904818 CCCAGTCTAA
* * *
35904828 GCATATGGAGGTCATTTCCAGTCTAAGATCAGACCGAAACGAGGGTTGCAGCAGGATCGACAGCA
1 GCATAGGGAGTTCA-TTCCAGTCTAAGACCAGACCGAAACGAGGGTTGCAGCAGGATCGACAGCA
* * * * * * * * *
35904893 CGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGTTGAGCTCCTGC
65 CGCAGAGGGGAGCAGGCCGATCCCCGGCTTACGCATTATACCTCTACGACCGGTTCAGCACCTGC
* *
35904958 ACGCCCGTTTCCTGGGTTGGCTTAG
130 ACGCCCGTTTCATGGGTTGACTTAG
* * * *
35904983 GCATGGGGAGTTCATTCCATGTCTAAGCCCA-ACCGAACCGAGGGTTGTGGCAGCGGGATCGACA
1 GCATAGGGAGTTCATTCCA-GTCTAAGACCAGACCGAAACGAGGG-T-T-GCAGCAGGATCGACA
* * * *
35905047 -CGACGCAGAAGGGGAGCAGGTCGATCCCCGGGTTACGCATTATGCCTCTACGATCGGTTCAGCA
62 GC-ACGCAG-AGGGGAGCAGGCCGATCCCCGGCTTACGCATTATACCTCTACGACCGGTTCAGCA
* *
35905111 CTTGCACGCTCGTTTCATGGGTTGACTTAG
125 CCTGCACGCCCGTTTCATGGGTTGACTTAG
** * * * * *
35905141 GCATATAGAGTTCATTCCCAATCTAAGATCAGATC-AAACCGAGGGTTACGACAGTAGGATCGAT
1 GCATAGGGAGTTCATT-CCAGTCTAAGACCAGACCGAAA-CGAGGGTT--G-CAGCAGGATCGAC
* * *
35905205 AGCACGCAGGGGGGACCGGGCCGATCC
61 AGCACGCAGAGGGGAGCAGGCCGATCC
35905232 TCGGTGTCAC
Statistics
Matches: 197, Mismatches: 40, Indels: 21
0.76 0.16 0.08
Matches are distributed among these distances:
154 17 0.09
155 21 0.11
156 2 0.01
157 21 0.11
158 107 0.54
159 28 0.14
160 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.31, T:0.21
Consensus pattern (154 bp):
GCATAGGGAGTTCATTCCAGTCTAAGACCAGACCGAAACGAGGGTTGCAGCAGGATCGACAGCAC
GCAGAGGGGAGCAGGCCGATCCCCGGCTTACGCATTATACCTCTACGACCGGTTCAGCACCTGCA
CGCCCGTTTCATGGGTTGACTTAG
Found at i:35908300 original size:26 final size:26
Alignment explanation
Indices: 35908270--35908322 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35908260 GTTGACTTAG
*
35908270 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
*
35908296 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
35908322 G
1 G
35908323 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:35908651 original size:159 final size:154
Alignment explanation
Indices: 35908296--35908790 Score: 425
Period size: 158 Copynumber: 3.2 Consensus size: 154
35908286 CCCAGTCTAA
* * * * **
35908296 GCATACGGAGTTCATTCCCAGCCTAAGATTAGACCAGACCGAGGCTTGCGATAGTAGGATC-AGC
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGT-GGATCGA-C
* * * * * * *
35908360 AGCACGCAGGGGGGACCAAGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGACCGGCT-GAG--
63 AGCACGTAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTAGCGCC
* * *
35908422 CAC-C-C-CGTTCCATGGGTTGGCTTAG
128 CACACGCTCATTTCATGGG-TGACTTAG
* ** * *
35908447 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCGGACTGAGGGTTGTGGCAGTGGCATCGAC
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAGTGG-ATCGAC
* *
35908511 AGCACGTAGAGGGGGACCGAGCCGATCCCCGACTTGTGCATTATGCCTCTCCGATCGGCTCAGCG
63 AGCACGTAG-GGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCT-AGCG
*
35908576 CCCACACGCTCCTTTCATGGGCTGACTTAG
126 CCCACACGCTCATTTCATGGG-TGACTTAG
* * *
35908606 GCATACAGAGTTCATTCCGAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATTGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAG-TGGATCGACA
* * * * * * *
35908671 GCACGTAGGGGGGATCGGGCCGATCCCC-AGCTTGGGCATTCTGCCAT-TTCGGTCGGTTGAGCA
64 GCACGTAGGGGGGACCGAGCCGATCCCCGA-CTTGCGCATTCTGCC-TCTCCGATCGGCT-AGCG
* * *
35908734 CCCGCACGCTCATTTCGTGGGTTAGCTTAG
126 CCCACACGCTCATTTCATGGGTGA-CTTAG
*
35908764 GCATACGGAATTCATTTCCAGTCTAAG
1 GCATACGGAGTTCA-TTCCAGTCTAAG
35908791 CATACGGAGT
Statistics
Matches: 278, Mismatches: 47, Indels: 31
0.78 0.13 0.09
Matches are distributed among these distances:
150 5 0.02
151 50 0.18
152 45 0.16
154 2 0.01
156 3 0.01
157 4 0.01
158 88 0.32
159 78 0.28
160 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTGGATCGACAGC
ACGTAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTAGCGCCCAC
ACGCTCATTTCATGGGTGACTTAG
Found at i:35908778 original size:158 final size:157
Alignment explanation
Indices: 35908296--35909612 Score: 413
Period size: 159 Copynumber: 8.2 Consensus size: 157
35908286 CCCAGTCTAA
* ** * * **
35908296 GCATACGGAGTTCATTCCCAGCCTAAG-ATTAGACCAGACCGAGGCTTGCGATAGTAGG-ATC-A
1 GCATACGGAGTTCATT-CCAGTCTAAGCACCA-ACCAGACCGAGGGTTGTGGCAG-AGGCATCGA
* * * ** * * * *
35908358 GCAGCACGCAG-GGGGGACCAAGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGACCGGCTGAG
63 -CAGCACGTAGAGGGGGACCGAGCCGATCCCCGACTTGGGCATTATGCCTCTCCGATCGGCTCAG
*
35908422 CA-CC-C-CG----TTCCATGGGTTGGCTTAG
127 CACCCACACGCTCATTTCATGGGTT-GCTTAG
* * * * *
35908447 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGTGGCATCGACA
1 GCATACGGAGTTCATTCCA-GTCTAAGCACCAACCAGACCGAGGGTTGTGGCAGAGGCATCGACA
* *
35908512 GCACGTAGAGGGGGACCGAGCCGATCCCCGACTTGTGCATTATGCCTCTCCGATCGGCTCAGCGC
65 GCACGTAGAGGGGGACCGAGCCGATCCCCGACTTGGGCATTATGCCTCTCCGATCGGCTCAGCAC
* *
35908577 CCACACGCTCCTTTCATGGGCTGACTTAG
130 CCACACGCTCATTTCATGGGTTG-CTTAG
* * *
35908606 GCATACAGAGTTCATTCCGAGTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAGCAGG-ATTGA
1 GCATACGGAGTTCATTCC-AGTCTAAGCACCA-ACCAGACCGAGGGTTGTGGCAG-AGGCATCGA
* * * * * * *
35908669 CAGCACGTAG-GGGGGATCGGGCCGATCCCC-AGCTTGGGCATTCTGCCAT-TTCGGTCGGTTGA
63 CAGCACGTAGAGGGGGACCGAGCCGATCCCCGA-CTTGGGCATTATGCC-TCTCCGATCGGCTCA
* *
35908731 GCACCCGCACGCTCATTTCGTGGGTTAGCTTAG
126 GCACCCACACGCTCATTTCATGGGTT-GCTTAG
* * * *
35908764 GCATACGGAATTCATTTCCAGTCTAAGCATACGGAGTTCATTCCCA-ATCTAAGATCGGATTG-G
1 GCATACGGAGTTCA-TTCCAGTCTAAGC--AC------CA--ACCAGA-C--CGA--GGGTTGTG
* * * * * * * * * *
35908827 ACTGAGGCTTGCGGTAGTAGGATCGGTAGCACGCAGGGGGCATCGGGCTGATCCCTGACTTGTGC
50 GCAGAGGCAT-C-G-A-CAGCA-C-GT---A-G-AGGGGG-ACCGAGCCGATCCCCGACTTGGGC
* * * * * * * ** * * * *
35908892 ATTTTGACTCTCC-AGCCAGCTGAACGCCCGTACGCCCGTTACGTGGGTTGGCTTAG
103 ATTATGCCTCTCCGA-TCGGCTCAGCACCCACACGCTCATTTCATGGGTT-GCTTAG
* * * * ** * ** * * *
35908948 GCATATGGTGTTCGTTCCATGTCTAAGCCCCAGTCGGATTGAGGGTTGTGGCAGCAAG-ACCGAT
1 GCATACGGAGTTCATTCCA-GTCTAAGCACCAACCAGACCGAGGGTTGTGGCAG-AGGCATCGAC
* * * * * * *
35909012 AGCACGCAGAGTGGGATC-AGGCCGATCCTC-AGCTTGCGCATTATACCTCTCCGATCGGTTCAG
64 AGCACGTAGAGGGGGACCGA-GCCGATCCCCGA-CTTGGGCATTATGCCTCTCCGATCGGCTCAG
* ** * * *
35909075 CGCCTGCACGTTCGTTTCATGGATTGACTTAG
127 CACCCACACGCTCATTTCATGGGTTG-CTTAG
* *
35909107 GCATACGAAGTTCATTCCCAGTCTAAG-A-TAGGACCAGACCGAGGGTTGTGGCAGTAGG-ATCG
1 GCATACGGAGTTCATT-CCAGTCTAAGCACCA--ACCAGACCGAGGGTTGTGGCAG-AGGCATCG
* * * * * * * * * * *
35909169 ACAGCACGCAG-GGGAGACCGGGTCGATCCCC-AGCTTGCGCATTCTGCCTCTCTG-GCCGATGA
62 ACAGCACGTAGAGGGGGACCGAGCCGATCCCCGA-CTTGGGCATTATGCCTCTCCGATCGGCTCA
* * *
35909231 GCACCCGCACGCCCATTTTAT-GG--G-TT-G
126 GCACCCACACGCTCATTTCATGGGTTGCTTAG
* * * * *
35909258 GC-T---GAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATCGACA
1 GCATACGGAGTTCATTCCA-GTCTAAGCACCAACCAGACCGAGGGTTGTGGCAGAGGCATCGACA
* * * * ** * * * *
35909319 GCACGTAGAGAGGGATCGGGCCGATCCCTGACTTTCGCATTATGCCTCTTCGATCAGCTCAACGC
65 GCACGTAGAGGGGGACCGAGCCGATCCCCGACTTGGGCATTATGCCTCTCCGATCGGCTCAGCAC
* ** * *
35909384 CCGCACGCTCATCCCGTGGGTTGGCTTTG
130 CCACACGCTCATTTCATGGGTT-GCTTAG
* * * *
35909413 GCATACGGACTTCATTTCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGTAGGACAGGTA
1 GCATACGGAGTTCATTCCA-GTCTAAGCACCAACCAGACCGAGGGTTGTGGCAG-AGG-C-----
* ** ** * * * * *
35909478 GTGGGATCGACAGCACGCAGAGGACGATAGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGA
58 -----ATCGACAGCACGTAGAGGGGGACCGAGCCGATCCCCGACTTGGGCATTATGCCTCTCCGA
* * * * *
35909543 TCGGCTGAGCGCCCATACGATCATTTCGTGGGTTGACTTAG
118 TCGGCTCAGCACCCACACGCTCATTTCATGGGTTG-CTTAG
* * *
35909584 GCATATGAAGTTCATCCCCAGTCTAAGCA
1 GCATACGGAGTTCAT-TCCAGTCTAAGCA
35909613 TACGGAGTTC
Statistics
Matches: 866, Mismatches: 205, Indels: 170
0.70 0.17 0.14
Matches are distributed among these distances:
146 5 0.01
147 49 0.06
148 32 0.04
149 20 0.02
150 8 0.01
151 52 0.06
152 50 0.06
153 3 0.00
154 4 0.00
155 5 0.01
156 2 0.00
157 21 0.02
158 124 0.14
159 225 0.26
160 14 0.02
161 2 0.00
162 1 0.00
165 1 0.00
166 1 0.00
167 7 0.01
168 5 0.01
169 1 0.00
170 12 0.01
171 108 0.12
172 11 0.01
173 1 0.00
174 2 0.00
175 4 0.00
176 3 0.00
177 2 0.00
180 1 0.00
181 1 0.00
182 1 0.00
183 11 0.01
184 76 0.09
185 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGCACCAACCAGACCGAGGGTTGTGGCAGAGGCATCGACAG
CACGTAGAGGGGGACCGAGCCGATCCCCGACTTGGGCATTATGCCTCTCCGATCGGCTCAGCACC
CACACGCTCATTTCATGGGTTGCTTAG
Found at i:35908803 original size:26 final size:26
Alignment explanation
Indices: 35908764--35908816 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35908754 GTTAGCTTAG
* *
35908764 GCATACGGAATTCATTTCCAGTCTAA
1 GCATACGGAATTCATTCCCAATCTAA
*
35908790 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAATTCATTCCCAATCTAA
35908816 G
1 G
35908817 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAATCTAA
Found at i:35909132 original size:501 final size:493
Alignment explanation
Indices: 35908247--35909257 Score: 1219
Period size: 501 Copynumber: 2.0 Consensus size: 493
35908237 GCACCCATAT
* *
35908247 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCATTTCATGGGTTGACTTAGGCATACGGAATTCATCCCCAGTCTAAGCATACGGAGTTCATT
* * *
35908312 CCCAGCCTAAGATTAGACCAGACCGAGGCTTGCGATAGTAGGATCAGCAGCACGCAGGGGGGACC
66 CCCAACCTAAGATCAGACCAGACCGAGGCTTGCGATAGTAGGATCAGCAGCACGCAGGGGGCACC
* * * * *
35908377 AAGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGACCGGCTGAGCACCCCGTTCCATGGGTTGG
131 AAGCCGATCCCCGACTTACGCATTCTGACTCTCAGACCAGCTGAGCACCCCGTTACATGGGTTGG
** *
35908442 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGTGGCAT
196 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGAAGCAC
* * * * *
35908507 CGACAGCACGTAGAGGGGGACCGAGCCGATCCCCGACTTGTGCATTATGCCTCTCCGATCGGCTC
261 CGACAGCACGCAGAGGGGGACAGAGCCGATCCCAGACTTGCGCATTATACCTCTCCGATCGGCTC
* *
35908572 AGCGCCCACACGCTCCTTTCATGGGCTGACTTAGGCATACAGAGTTCATTCCGAGTCTAAGATCA
326 AGCGCCCACACGCTCCTTTCATGGACTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT-A
* * * *
35908637 -GACCAGACCGAGGGTTGTGGCAGCAGGATTGACAGCACGTAGGGGGGATCGGGCCGATCCCCAG
390 GGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGAGACCGGGCCGATCCCCAG
* * * *
35908701 CTTGGGCATTCTGCCATTTC-GGTCGGTTGAGCACCCGCAC
455 CTTGCGCATTCTGCC-TCTCTGG-CCGATGAGCACCCGCAC
* **
35908741 GCTCATTTCGTGGGTT-AGCTTAGGCATACGGAATTCATTTCCAGTCTAAGCATACGGAGTTCAT
1 GCTCATTTCATGGGTTGA-CTTAGGCATACGGAATTCATCCCCAGTCTAAGCATACGGAGTTCAT
* * *** * * * * *
35908805 TCCCAATCTAAGATCGGATTGGACTGAGGCTTGCGGTAGTAGGATCGGTAGCACGCAGGGGGCAT
65 TCCCAACCTAAGATCAGACCAGACCGAGGCTTGCGATAGTAGGATCAGCAGCACGCAGGGGGCAC
** * * ** *
35908870 CGGGCTGATCCCTGACTTGTGCATTTTGACTCTCCAG-CCAGCTGAACGCCCGTACGCCCGTTAC
130 CAAGCCGATCCCCGACTTACGCATTCTGACTCT-CAGACCAGCTG-A-G--C--AC-CCCGTTAC
* * * * ** *
35908934 GTGGGTTGGCTTAGGCATATGGTGTTCGTTCCATGTCTAAGCCCCAGTCGGATTGAGGGTTGTGG
187 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGG
* *
35908999 CAGCAAG-ACCGATAGCACGCAGAGTGGGATCAG-GCCGATCCTCAG-CTTGCGCATTATACCTC
252 CAG-AAGCACCGACAGCACGCAGAGGGGGA-CAGAGCCGATCC-CAGACTTGCGCATTATACCTC
* ** * * *
35909061 TCCGATCGGTTCAGCGCCTGCACGTTCGTTTCATGGATTGACTTAGGCATAC-GAAGTTCATTCC
314 TCCGATCGGCTCAGCGCCCACACGCTCCTTTCATGGACTGACTTAGGCATACAG-AGTTCATTCC
*
35909125 CAGTCTAAGATAGGACCAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGAGACCGG
378 CAGTCTAAGATAGGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGAGACCGG
*
35909190 GTCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCCGATGAGCACCCGCAC
443 GCCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCCGATGAGCACCCGCAC
* *
35909241 GCCCATTTTATGGGTTG
1 GCTCATTTCATGGGTTG
35909258 GCTGAGTTCA
Statistics
Matches: 433, Mismatches: 68, Indels: 25
0.82 0.13 0.05
Matches are distributed among these distances:
493 1 0.00
494 139 0.32
495 3 0.01
496 1 0.00
498 1 0.00
500 35 0.08
501 248 0.57
502 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (493 bp):
GCTCATTTCATGGGTTGACTTAGGCATACGGAATTCATCCCCAGTCTAAGCATACGGAGTTCATT
CCCAACCTAAGATCAGACCAGACCGAGGCTTGCGATAGTAGGATCAGCAGCACGCAGGGGGCACC
AAGCCGATCCCCGACTTACGCATTCTGACTCTCAGACCAGCTGAGCACCCCGTTACATGGGTTGG
CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGAAGCAC
CGACAGCACGCAGAGGGGGACAGAGCCGATCCCAGACTTGCGCATTATACCTCTCCGATCGGCTC
AGCGCCCACACGCTCCTTTCATGGACTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATAG
GACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGAGACCGGGCCGATCCCCAGC
TTGCGCATTCTGCCTCTCTGGCCGATGAGCACCCGCAC
Found at i:35909613 original size:26 final size:26
Alignment explanation
Indices: 35909584--35909636 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35909574 GTTGACTTAG
*
35909584 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
35909610 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
35909636 G
1 G
35909637 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:35910014 original size:26 final size:26
Alignment explanation
Indices: 35909964--35910016 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35909954 GTTGGTTTAG
*
35909964 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
35909990 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
35910016 G
1 G
35910017 ATTCAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:35911568 original size:25 final size:25
Alignment explanation
Indices: 35911534--35911585 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
35911524 TGGCTTAGGC
* *
35911534 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
35911559 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
35911584 AT
1 AT
35911586 CTAATCGGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (25 bp):
ATACAGAGTTCATTCCCAGTCTAAG
Found at i:35912094 original size:26 final size:26
Alignment explanation
Indices: 35912060--35912110 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
35912050 TTGACTTAGG
* *
35912060 CATATGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCCAATCTAAC
*
35912086 CATACGGAGTTCATTCCCAATCTAA
1 CATACGGAGTTCATCCCCAATCTAA
35912111 GATCAGACCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAATCTAAC
Found at i:35912595 original size:26 final size:26
Alignment explanation
Indices: 35912559--35912611 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35912549 GTTGGCTTAG
35912559 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
35912585 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35912611 G
1 G
35912612 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35912772 original size:185 final size:183
Alignment explanation
Indices: 35912402--35912772 Score: 462
Period size: 185 Copynumber: 2.0 Consensus size: 183
35912392 GTTGACTTAG
*
35912402 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTGACGATAGCAGGACTGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTGACGATAGCAGGACTGATA
* * **** *
35912467 GCACGCAGGGGGACCAGGCCAGTCCCCGACTTGTGCATTCTGCCTCTTTGGTCGGCTGAACGCTC
66 GCACGCAGGGGGACCAGGCCAGTCCCCGACTTGCGCATTCTACCTCTCCAATCGGCTGAACGCCC
* * * *
35912532 GTATGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* *
35912585 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTG-C-AGTAGCAGGA-TCG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG-TGACGA-TAGCAGGACT-G
* * * * ** *
35912647 ATAGCATGCAGGGGGGAACTGAGTC-GATCCTTGGCTTGCGCATTCTACCTCTCCAATCGGCTGA
63 ATAGCACGCA-GGGGGACCAG-GCCAG-TCCCCGACTTGCGCATTCTACCTCTCCAATCGGCTGA
*
35912711 ACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
125 ACGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
35912770 GCA
1 GCA
35912773 CCAGCCGAAC
Statistics
Matches: 160, Mismatches: 22, Indels: 10
0.83 0.11 0.05
Matches are distributed among these distances:
182 2 0.01
183 61 0.38
184 11 0.07
185 86 0.54
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (183 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTGACGATAGCAGGACTGATA
GCACGCAGGGGGACCAGGCCAGTCCCCGACTTGCGCATTCTACCTCTCCAATCGGCTGAACGCCC
GCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:35912957 original size:26 final size:26
Alignment explanation
Indices: 35912928--35912980 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35912918 GTTGACTTAG
* *
35912928 GCATACGGAGTTTATCCCCAATCTAA
1 GCATACGGACTTCATCCCCAATCTAA
* *
35912954 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATCCCCAATCTAA
35912980 G
1 G
35912981 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCAATCTAA
Found at i:35913282 original size:368 final size:368
Alignment explanation
Indices: 35912546--35913538 Score: 1113
Period size: 368 Copynumber: 2.7 Consensus size: 368
35912536 GCTCATTTTG
* *
35912546 TGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTA
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTA
** * * * *
35912610 AGATTGGACCAGACCGAGGGTTGCAGTAGCAGGATCGATAGCATGCAGGGGGGAACTGAGTCGAT
65 AGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGG-ACTGAGACGAT
** * * * * *
35912675 CCTTGGCTTGCGCATTCTACCTCTCCAATCGGCTGAACGCCCGCACGCTCG-TTTCGTGGGTTGG
129 CCTCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGCTTTCGTGGGTTGG
* * * * *
35912739 CTTAGGCATAC-AGAGTTCATTCCATGTCTAAGCACCAGCCGAACCGAGGGTTGTGGTAGCATGA
194 CTTAGGCATACGA-AGTTCATTCCATGTCTAAGCCCCAG-CGGACCGAGGGTTGTGGCAGTAGGA
*
35912803 CCAACAGCGGGATCAGCAGCAAGCAAAGAGGGACCGGCCTGATCCCCGACTTGCGCATTATGCCT
257 CCAACAGCGGGATCAGCAGCAAGCAAAGAGGGACCGGCCAGATCCCCGACTTGCGCATTATGCCT
* * *
35912868 CTCCAACCGGCCTTTTCGGCCGGCTGAGCACCCGCACGCCCGTTTCA
322 CTCCAACCGGCCTCTCCGACCGGCTGAGCACCCGCACGCCCGTTTCA
* * * *
35912915 TTGGTTGACTTAGGCATACGGAGTTTATCCCCAATCTAAGCATACGGACTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * *
35912980 GATCAGACCAGATCGAGGGTTGCGGTAGTAGGATCGACAGCACGCAGTAGAGACTGGGCCGATCC
66 GATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGACTGAGACGATCC
* * * *
35913045 TCAGCTTGCGCATTATGCCTCTCTGACCGACTCAGCGTCCGCACGCTCGCTTT-GTGGGTTGGCT
131 TCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGCTTTCGTGGGTTGGCT
* * * * * * *
35913109 TAGGCATACGAAGTCCATTCAATATCTAAGCCCCAGTCGGACTGAGGGCTGTGGCAGTAGGATCG
196 TAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAG-CGGACCGAGGGTTGTGGCAGTAGGACCA
** * * * * * * * * * *
35913174 GTAGTGGGATCGGTAGCACGTAGAGGGGGACTGGGCAGATCCCTGACTTGCGCATTATGCCTCTC
260 ACAGCGGGATCAGCAGCAAGCAAAGAGGGACCGGCCAGATCCCCGACTTGCGCATTATGCCTCTC
** * * * * * * *
35913239 CAGTCGTCCTCTCCGATCGGTTGAGCGCCGGTACGCTCGTTTCA
325 CAACCGGCCTCTCCGACCGGCTGAGCACCCGCACGCCCGTTTCA
35913283 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
35913348 GATCAGATCGGACCGAGGGTTACGAT-GCAAGATCGACAGCACGTAGGGGGGA-TCGAGAAGATC
66 GATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGACT-GAGACGATC
* * * * *
35913411 CCCAGCTTGCGTATTCTGCCTCTCCGGCCGATTGAGCGCCCGCACGC-C-CATTTCATGGGTTGG
130 CTCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGC-TTTCGTGGGTTGG
* * *
35913474 CTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCAGCTGGACCGAGGGTTGTGGCAGTGGGAC
194 CTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGC-GGACCGAGGGTTGTGGCAGTAGGAC
35913538 C
258 C
35913539 GGCAGCATGC
Statistics
Matches: 514, Mismatches: 103, Indels: 17
0.81 0.16 0.03
Matches are distributed among these distances:
365 2 0.00
366 32 0.06
367 100 0.19
368 276 0.54
369 101 0.20
370 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (368 bp):
TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGACTGAGACGATCC
TCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGCTTTCGTGGGTTGGCT
TAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCGGACCGAGGGTTGTGGCAGTAGGACCAA
CAGCGGGATCAGCAGCAAGCAAAGAGGGACCGGCCAGATCCCCGACTTGCGCATTATGCCTCTCC
AACCGGCCTCTCCGACCGGCTGAGCACCCGCACGCCCGTTTCA
Found at i:35913326 original size:26 final size:26
Alignment explanation
Indices: 35913296--35913348 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35913286 GTTGACTTAG
35913296 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
35913322 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35913348 G
1 G
35913349 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35913610 original size:158 final size:158
Alignment explanation
Indices: 35913322--35913809 Score: 398
Period size: 158 Copynumber: 3.1 Consensus size: 158
35913312 CCCAGTCTAA
* * * *
35913322 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TCGGACCGAGGGTTACGATGC-A-A-GATC-
1 GCATAGGGAGTTCATTCCCAGTCTAAGACCAGACT-GGACCGAGGGTTGCG--GCAATAGGACCA
* * * ** * * * * * * *
35913382 GACAGCACGTAGGGGGGATCGAGAAGATCCCC-AGCTTGCGTATTCTGCCTCTCCGGCCGATTGA
63 G-CAGCACGCAGGGGGGACCGGGTCGATCCCCGA-CTTACGCATTATACCTCTCCAGCCGACTCA
*
35913446 GCGCCCGCACGCCCATTTCATGGGTTGGCTTAG
126 ACGCCCGCACGCCCATTTCATGGGTTGGCTTAG
* * * * *
35913479 GCATAGGGAGTTCATT-CCATGTCTAAGCCCAG-CTGGACCGAGGGTTGTGGCAGTGGGACCGGC
1 GCATAGGGAGTTCATTCCCA-GTCTAAGACCAGACTGGACCGAGGGTTGCGGCAATAGGACCAGC
* * * * * *
35913542 AGCATGCAGAGGGGGACTGGGTCGATCCTCGGCTTACGCATTATGCCTCTTCAGCCGACTCAACG
65 AGCACGCAG-GGGGGACCGGGTCGATCCCCGACTTACGCATTATACCTCTCCAGCCGACTCAACG
* * * * * * *
35913607 CCCGTACACTCGTTCCATGGGTTGACTTAT
129 CCCGCACGCCCATTTCATGGGTTGGCTTAG
* * * * *
35913637 GCATATGGAGCTCATTCCCAGTGTAAGATCAGACTGGACCGAGGGTTGCGGCAATAGGATCAGCA
1 GCATAGGGAGTTCATTCCCAGTCTAAGACCAGACTGGACCGAGGGTTGCGGCAATAGGACCAGCA
* * * * ** * * * *
35913702 GCACGTAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCGGTTGGCTGAGCACC
66 GCACGCAGGGGGGACCGGGTCGATCCCCGACTTACGCATTATACCTCTCCAGCCGACTCAACGCC
*
35913767 CGCACGCCCATTTCGTGGGTTGGCTTAG
131 CGCACGCCCATTTCATGGGTTGGCTTAG
35913795 GCATAGGGAGTTCAT
1 GCATAGGGAGTTCAT
35913810 GCGGGACCGG
Statistics
Matches: 253, Mismatches: 68, Indels: 19
0.74 0.20 0.06
Matches are distributed among these distances:
154 2 0.01
156 16 0.06
157 37 0.15
158 162 0.64
159 36 0.14
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATAGGGAGTTCATTCCCAGTCTAAGACCAGACTGGACCGAGGGTTGCGGCAATAGGACCAGCA
GCACGCAGGGGGGACCGGGTCGATCCCCGACTTACGCATTATACCTCTCCAGCCGACTCAACGCC
CGCACGCCCATTTCATGGGTTGGCTTAG
Found at i:35914033 original size:279 final size:279
Alignment explanation
Indices: 35913579--35914088 Score: 815
Period size: 279 Copynumber: 1.8 Consensus size: 279
35913569 CTCGGCTTAC
35913579 GCATTATGCCTCTTCAGCCGACTCAACGCCCGTACACTCGTTCCATGGGTTGACTTATGCATATG
1 GCATTATGCCTCTTCAGCCGACTCAACGCCCGTACACTCGTTCCATGGGTTGACTTATGCATATG
* *
35913644 GAGCTCATTCCCAGTGTAAGATCAGACTGGACCGAGGGTTGCGGCAATAGGATCAGCAGCACGTA
66 GAGCTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGCAACAGGATCAGCAGCACGTA
*
35913709 GGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCGGTTGGCTGAGCACCCGCACGC
131 GGAGGGACCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCGGTTGGCTGAGCACCCGCACGC
35913774 CCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATGCGGGACCGGCCGCACGCAGAGGGGGATC
196 CCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATGCGGGACCGGCCGCACGCAGAGGGGGATC
35913839 GAGCCGATCCCCAACTTGT
261 GAGCCGATCCCCAACTTGT
* * * * * *
35913858 GCATTATGCCTCTTCGGCCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTATGCATATG
1 GCATTATGCCTCTTCAGCCGACTCAACGCCCGTACACTCGTTCCATGGGTTGACTTATGCATATG
* * * * *
35913923 GAGTTCATTCCTAGTGTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATC-GACAGCACGT
66 GAGCTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGCAACAGGATCAG-CAGCACGT
* * * *
35913987 AGGAGGGACCGGGTCGATCTCCGGCTTGCGCATTCTGCCTCTCCGGTTGGCTGAGCGCCCGCACG
130 AGGAGGGACCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCGGTTGGCTGAGCACCCGCACG
* * *
35914052 CTCATTTTGTGGGTTGGCTTAGGCATATGGAGTTCAT
195 CCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
35914089 TCCATGTCTA
Statistics
Matches: 209, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
278 1 0.00
279 208 1.00
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.24
Consensus pattern (279 bp):
GCATTATGCCTCTTCAGCCGACTCAACGCCCGTACACTCGTTCCATGGGTTGACTTATGCATATG
GAGCTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGCAACAGGATCAGCAGCACGTA
GGAGGGACCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCGGTTGGCTGAGCACCCGCACGC
CCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATGCGGGACCGGCCGCACGCAGAGGGGGATC
GAGCCGATCCCCAACTTGT
Found at i:35915877 original size:25 final size:26
Alignment explanation
Indices: 35915848--35915899 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
35915838 GTTGACTTAG
*
35915848 GCATATGGAGTTCA-TCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
35915873 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
35915899 G
1 G
35915900 ATCGAATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:35916404 original size:26 final size:26
Alignment explanation
Indices: 35916375--35916427 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35916365 GTTGACTTAG
*
35916375 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
* *
35916401 GCATATGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
35916427 G
1 G
35916428 ATCAAACGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCCAGTCTAA
Found at i:35916605 original size:527 final size:526
Alignment explanation
Indices: 35914758--35917246 Score: 2292
Period size: 527 Copynumber: 4.8 Consensus size: 526
35914748 CTCTGGTGGT
** * * *
35914758 CTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGC
1 CTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * * * * *
35914823 ATATAGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGC-GATAGTAGGATCGGCT-
66 ATATGGAGTTCATTCCCAGTCTAAGATC-AAACGGATCGAGGGTTGCAG-TAGCAGGATC-GATA
* *** **
35914886 GCACGCAGGGGGGACCGGGCCGATCCCC-AGCTTGCGCATTCTACCTCT-TCGGTCGGCTGAGCG
128 GCACGCAGGGGGGACCAGAAAGATCCCCGA-CTTGCGCATTCTACCTCTCT-GACCGGCTGAGCG
* * * * * *
35914949 ACCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAGTC
191 CCCGCACGACCATTTCGTGGGTTAGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGTC
* * * * * * * * *
35915014 AGACCGAGGGTTATGGTAGCAGGA-TCGCCAGCACACAGAGGGGGATCGGACCGATCCCTGGCTT
256 GGACCGAGGGTTGTGGCAGCGGGACT-GGCAGCACGCAGAGGGGGACCGGGCTGATCCCTGGCTT
* * * * * * * *
35915078 GCGCATTATGCTTCTCTC-ACCGACTCAGTGCCCGTAAGCTCGTTTCGTTGGTTAGCTTAGGCAT
320 GCGCATTATGCCTCTC-CGTCCGACTCAATGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAT
* * ** * * *
35915142 ACGAAGTTCATTCCATGTCTAAGCCCTAGCC-GAACTGAGGGCTGTGGCAGTAGGACCAATAGTG
384 ACGGAGTTCATTCCATGTCTAAGCCCCAGCCAG-ACCAAGGGCTGTGGCAGCAGGACCGATAGCG
* ** * * * * * *
35915206 GGATCGGCAGCATGCAGAGGGGGACCGGGAAAATCCTC-AGCTTATGCATTATGCCTCTCCAGTC
448 GGATCTGCAGCACACAGAGGGGGATCGGGCAGATCCCCGA-CTTACGCATTATGCCTCTCCAGCC
* * ***
35915270 GGCCTCTCTGGCTGG
512 GGCCTCTCCGACCAA
* * * *
35915285 TTGAGCACCCGTACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAG-CATAAG
1 CTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC-TAAG
* * * * * * *
35915349 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGCTCGGTAG
65 CATATGGAGTTCATTCCCAGTCTAAGATCA-AACGGATCGAGGGTTGCAGTAGCAGGATCGATAG
* * * * * *
35915414 CACGTAGGGGGGATC-GAGAAGATCCCC-AGCTTGTGCATTCTACCTCTCCGACCGACTGAGTGC
129 CACGCAGGGGGGACCAGA-AAGATCCCCGA-CTTGCGCATTCTACCTCTCTGACCGGCTGAGCGC
* * * * * *
35915477 CCACACGTCCGTTTTGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCG
192 CCGCACGACCATTTCGTGGGTTAGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGTCG
* * * ** * *
35915542 GACTGAGGGTTGTGGCAGCGAGACTGACAGCACATAGAGGGGGATCGGGCTGATCCCTTGCTTGC
257 GACCGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGGGGACCGGGCTGATCCCTGGCTTGC
* *
35915607 GCATTATGCCTCTCCGAT-CGACTCAATGCCCGCACTG-TCGTTTCATGGGTTGGCTTAGGCATA
322 GCATTATGCCTCTCCG-TCCGACTCAATGCCCGCAC-GCTCATTTCGTGGGTTGGCTTAGGCATA
* * * * * * ** **
35915670 CGGAGTTCATTCCATGTC-AAGCGCTAGCCAGACTGAA-GGCTGTGGTAGCAAGACTGGCAGCAA
385 CGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAC-CAAGGGCTGTGGCAGCAGGACCGATAGCGG
* * * ** * *
35915733 GATCAGCAGCACATAAAGGGGGATCGGGTTGATCCCCGACTTGCGCATTATGCCTCTCCAGCTGG
449 GATCTGCAGCACACAGAGGGGGATCGGGCAGATCCCCGACTTACGCATTATGCCTCTCCAGCCGG
*
35915798 CCTCTCCGACCGA
514 CCTCTCCGACCAA
* * *
35915811 CTGAGTGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCAT-CCCAATCTAAGC
1 CTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * * * * * * *
35915875 ATACGGAGTTCATTCCCAGTCTAAGATCGAATCGAACCAAGGGCTACAGCAGCAGGATCGACAGC
66 ATATGGAGTTCATTCCCAGTCTAAGATC-AAACGGATCGAGGGTTGCAGTAGCAGGATCGATAGC
* * * ** ** * * * *
35915940 ACGTAAGGGGAACTTGGTCA-ATCCCCGACTTACGCATTCTGCCTCTCT-AGCTGGCTGAGCACC
130 ACGCAGGGGGGAC-CAGAAAGATCCCCGACTTGCGCATTCTACCTCTCTGA-CCGGCTGAGCGCC
* * * *
35916003 CGCAC-ACTTATTTCATGGGTTGGCATAGGCATACG-GAGTTCATTCCATGTCTAAGCCCCAGTC
193 CGCACGAC-CATTTCGTGGGTTAGCTTAGGCATA-GAGAGTTCATTCCATGTCTAAGCCCCAGTC
* *
35916066 GAACCGAGGGTTGTGGCAGTAGGGACTGGCAGCACGCAGAGGGGGACCGGGCTGATCCCTGGCTT
256 GGACCGAGGGTTGTGGCAG-CGGGACTGGCAGCACGCAGAGGGGGACCGGGCTGATCCCTGGCTT
* * * * ** *
35916131 GCACATTCTGCCTTTACGTTTGACTCAACGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA
320 GCGCATTATGCCTCTCCGTCCGACTCAATGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA
* * * * *
35916196 CGGAGTTCATTCCATGTCTAAACCCCAGTCAGACCAAGGGCTATGGCAGTAGGACCGATAGTGGG
385 CGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGCTGTGGCAGCAGGACCGATAGCGGG
* * * *
35916261 ATCTGCAGCATACAGAGGGGGATCGGGCAGTTCCCCGGCTTACGCGTTATGCCTCTCCAGCCGGC
450 ATCTGCAGCACACAGAGGGGGATCGGGCAGATCCCCGACTTACGCATTATGCCTCTCCAGCCGGC
*
35916326 CTTTCCGACCAA
515 CTCTCCGACCAA
*
35916338 CTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* *
35916403 ATATGGAGCTCATTCCCAGTCTAAGATCAAACGGGATCGAGGGTTACAGTAGCAGGATCGATAGC
66 ATATGGAGTTCATTCCCAGTCTAAGATCAAAC-GGATCGAGGGTTGCAGTAGCAGGATCGATAGC
* * * ** **
35916468 ACGCAGGGGGGACCAGAAAGATCCCCGACTTACGTATTCTACCTCTCTGACCGACTGAATGCTTG
130 ACGCAGGGGGGACCAGAAAGATCCCCGACTTGCGCATTCTACCTCTCTGACCGGCTGAGCGCCCG
* * *
35916533 TACGACCATTTTGTGGGTTAGCTTAGGCATAGAGAGTTCATTCCATGTCTAAG-CCCAGCCGGAC
195 CACGACCATTTCGTGGGTTAGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC
* * * * * *
35916597 CGAGGGTTGTGGTAGCGGGAC-CG-A-CA-GCATA----CAGC-GG--GAT--C-GGCTTGTGCA
260 CGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGGGGACCGGGCTGATCCCTGGCTTGCGCA
* * * * * * * *
35916648 TTATGCCTCTCCGGCTGACTCAGTGCCCGTACACTCATTTCGTGGGTTGACTTAGGCGTACAGAG
325 TTATGCCTCTCCGTCCGACTCAATGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAG
* * *
35916713 TTCATTGCATGTCTAAGCCCCAGCCAGACCAAGGCCTGTGGCAGCAGGACCGGTAGCGGGAT-TG
390 TTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGCTGTGGCAGCAGGACCGATAGCGGGATCT-
** * * * * *
35916777 GCAGCACGTAGAGGGGAATCGGGCTGATCCCTGACTTACACATTATGCCTCTCCAGCTGGCCTCT
454 GCAGCACACAGAGGGGGATCGGGCAGATCCCCGACTTACGCATTATGCCTCTCCAGCCGGCCTCT
** *
35916842 CCGGTCAG
519 CCGACCAA
* * **
35916850 CTGAGCGCCCGTATGCTCGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATCCTTAGTCTAAGC
1 CTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * ** * *
35916915 ATATGGAGTTCATTCCCAGTCTAAGATCAGACAAGATCGAAGGTTGTGGTAGTAGGATCGACAGC
66 ATATGGAGTTCATTCCCAGTCTAAGATCAAAC-GGATCGAGGGTTGCAGTAGCAGGATCGATAGC
* * * * *
35916980 ACACAGGGGGGATCA-AGTAGATCCCCGACTTGCGCATTCTACCTCT-TCGGCCGGTTGAGCGCC
130 ACGCAGGGGGGACCAGA-AAGATCCCCGACTTGCGCATTCTACCTCTCT-GACCGGCTGAGCGCC
*
35917043 CGCAC-ACCCATTTCGTGGGTTAGCTTAGGCATA-AGGAGTTCATTCCATGTCTAAGCCCCAGTT
193 CGCACGA-CCATTTCGTGGGTTAGCTTAGGCATAGA-GAGTTCATTCCATGTCTAAGCCCCAGTC
* * * * * * *
35917106 GGATCGAGGGTTGTGGCAGCGGGACCGGTAACATGCAAAGGGGGACCGGGCT-AT-CCTCGACTT
256 GGACCGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGGGGACCGGGCTGATCCCT-GGCTT
* * * *** * * * * *
35917169 GCGCATTATGCCTCTTCGGCC-AGTTCAGCCCCCACACGCTCGTTTCATGGGTTGACTTATGCAT
320 GCGCATTATGCCTCTCCGTCCGA-CTCAATGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAT
*
35917233 ATGGAGTTCATTCC
384 ACGGAGTTCATTCC
35917247 CGGTGTAAGA
Statistics
Matches: 1599, Mismatches: 310, Indels: 107
0.79 0.15 0.05
Matches are distributed among these distances:
511 5 0.00
512 385 0.24
513 29 0.02
514 1 0.00
515 4 0.00
516 2 0.00
517 6 0.00
518 2 0.00
521 2 0.00
522 6 0.00
523 4 0.00
524 4 0.00
525 171 0.11
526 322 0.20
527 501 0.31
528 152 0.10
529 3 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (526 bp):
CTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
ATATGGAGTTCATTCCCAGTCTAAGATCAAACGGATCGAGGGTTGCAGTAGCAGGATCGATAGCA
CGCAGGGGGGACCAGAAAGATCCCCGACTTGCGCATTCTACCTCTCTGACCGGCTGAGCGCCCGC
ACGACCATTTCGTGGGTTAGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACC
GAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGGGGACCGGGCTGATCCCTGGCTTGCGCAT
TATGCCTCTCCGTCCGACTCAATGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGCTGTGGCAGCAGGACCGATAGCGGGATCTGC
AGCACACAGAGGGGGATCGGGCAGATCCCCGACTTACGCATTATGCCTCTCCAGCCGGCCTCTCC
GACCAA
Found at i:35916935 original size:26 final size:26
Alignment explanation
Indices: 35916887--35916939 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35916877 GTTGACTTAG
*
35916887 GCATACGGAGTTCATCCTTAGTCTAA
1 GCATACGGAGTTCATCCTCAGTCTAA
*
35916913 GCATATGGAGTTCATTCC-CAGTCTAA
1 GCATACGGAGTTCA-TCCTCAGTCTAA
35916939 G
1 G
35916940 ATCAGACAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCAGTCTAA
Found at i:35917613 original size:26 final size:26
Alignment explanation
Indices: 35917576--35917628 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35917566 GTTGGCTTAG
35917576 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
35917602 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
35917628 G
1 G
35917629 ATTGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:35917954 original size:26 final size:26
Alignment explanation
Indices: 35917918--35917970 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35917908 GTTGGCTTAG
35917918 GCATACAGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
*
35917944 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
35917970 G
1 G
35917971 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:35918686 original size:26 final size:26
Alignment explanation
Indices: 35918639--35918691 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35918629 GTTGACCTAG
* *
35918639 GCATACGGAGTTCATCCTCAGTCTAA
1 GCATACGAAGTTCATCCTCAGTATAA
35918665 GCATACGAAGTTCATTCC-CAGTATAA
1 GCATACGAAGTTCA-TCCTCAGTATAA
35918691 G
1 G
35918692 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCTCAGTATAA
Found at i:35918889 original size:12 final size:12
Alignment explanation
Indices: 35918872--35918909 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
35918862 TGAGGGTTGT
35918872 GGCAGCAAGACC
1 GGCAGCAAGACC
*
35918884 GGCAGCAAGATC
1 GGCAGCAAGACC
*
35918896 GGCAGCAGGACC
1 GGCAGCAAGACC
35918908 GG
1 GG
35918910 TAGCGGGACC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.29, C:0.29, G:0.39, T:0.03
Consensus pattern (12 bp):
GGCAGCAAGACC
Found at i:35919363 original size:26 final size:26
Alignment explanation
Indices: 35919327--35919376 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
35919317 GACTTTGGTG
35919327 TACAGAGTTCATCCCCAGTCTAAGCA
1 TACAGAGTTCATCCCCAGTCTAAGCA
*
35919353 TACAGAGTTCATTCCCAGTCTAAG
1 TACAGAGTTCATCCCCAGTCTAAG
35919377 ATCAAACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (26 bp):
TACAGAGTTCATCCCCAGTCTAAGCA
Found at i:35920309 original size:158 final size:157
Alignment explanation
Indices: 35920120--35920510 Score: 386
Period size: 158 Copynumber: 2.5 Consensus size: 157
35920110 CATTCTGCCA
* * * *
35920120 CTCCGACTAGCTAAGCACCCGCA-TGCCCATTTCATGGGTTGGCTTAGTCATAGGGAGTTCATTC
1 CTCCGACTGGCTAAGCGCCCGCAGT-CTCATTTCATGGGTTGGCTTAGTCATACGGAGTTCATTC
* ** ** *
35920184 CATGTCTAAGCCGCAGCCGAACCGAGGGTTGTGGCAGT-GAGA-CTGGTAGCATGCAGAGTGGGA
65 CATATCTAAGCCGCA-CCGAACCGAGGGTTGCCGCAGTAG-GATC-GACAGCATGCAG-GGGGGA
* * **
35920247 T-GGGCCGATCCTC-GACTTGCGCATTATGGCT
126 TCGAGCCGATCCTCAG-CTTACGCATTATACCT
** * * *
35920278 CTCCGGTTGGCTTAA-TGCCCGCACGT-TCATTTCATGGGTTGACTTAGGT-ATATGGAGTTCAT
1 CTCCGACTGGC-TAAGCGCCCGCA-GTCTCATTTCATGGGTTGGCTTA-GTCATACGGAGTTCAT
* * *
35920340 TCCCA-ATCTAAGATCGGACCGGACCGAGGGTTGCCGCAGTAGGATCGACAGCATGCAGGGGGGA
63 T-CCATATCTAAG-CCGCACCGAACCGAGGGTTGCCGCAGTAGGATCGACAGCATGCAGGGGGGA
*
35920404 TCGAGCCGATCCTCAGCTTACGCATTCTACCT
126 TCGAGCCGATCCTCAGCTTACGCATTATACCT
* * *
35920436 CTCCGACTGGCTAAGCGCCCGCATTCTCATTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCC
1 CTCCGACTGGCTAAGCGCCCGCAGTCTCATTTCATGGGTTGGCTTAGTCATACGGAGTTCATTCC
35920501 ATATCTAAGC
66 ATATCTAAGC
35920511 ATACGGAGTT
Statistics
Matches: 188, Mismatches: 31, Indels: 29
0.76 0.12 0.12
Matches are distributed among these distances:
157 14 0.07
158 159 0.85
159 14 0.07
160 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.26
Consensus pattern (157 bp):
CTCCGACTGGCTAAGCGCCCGCAGTCTCATTTCATGGGTTGGCTTAGTCATACGGAGTTCATTCC
ATATCTAAGCCGCACCGAACCGAGGGTTGCCGCAGTAGGATCGACAGCATGCAGGGGGGATCGAG
CCGATCCTCAGCTTACGCATTATACCT
Found at i:35920553 original size:184 final size:185
Alignment explanation
Indices: 35920331--35920687 Score: 468
Period size: 185 Copynumber: 1.9 Consensus size: 185
35920321 TTAGGTATAT
* * **
35920331 GGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCCGCAGTAGGATCGACAGCATGC
1 GGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTACCGCAGCAGGATCGACAGCACAC
* *
35920396 AG-GGGGGATCGA-GCCGATCCTCAGCTTACGCATTCTACCTCTCCGACT-GGCTAAGCGCCCGC
66 AGAGGGGGAT-GAGGACGATCCTCAGCTTACGCATTCTACCTCTCCG-CTCGGCTAAGCACCCGC
** *
35920458 ATTCTCATTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGCATAC
129 ACGCTCATTTCCTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGCATAC
* * * *
35920515 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACAT
1 GGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTACCGCAGCAGGATCGACAGCACAC
* * ** * * * * *
35920580 AGAGGGGGATTAGGATGATCCTTGGCTTGCGCATTCTGCCTCTCTGGTCGGCTAAGCACCCGTAC
66 AGAGGGGGATGAGGACGATCCTCAGCTTACGCATTCTACCTCTCCGCTCGGCTAAGCACCCGCAC
*
35920645 GCTCGTTTCCTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
131 GCTCATTTCCTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
35920688 GCCTAAGCCC
Statistics
Matches: 147, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
184 61 0.41
185 86 0.59
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (185 bp):
GGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTACCGCAGCAGGATCGACAGCACAC
AGAGGGGGATGAGGACGATCCTCAGCTTACGCATTCTACCTCTCCGCTCGGCTAAGCACCCGCAC
GCTCATTTCCTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGCATAC
Found at i:35920888 original size:26 final size:26
Alignment explanation
Indices: 35920852--35920904 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35920842 GTTGACTTAG
35920852 GCATATAGAGTTCA-TCCCTAGTCTAA
1 GCATATAGAGTTCATTCCC-AGTCTAA
*
35920878 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
35920904 G
1 G
35920905 ATCGAACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:35921240 original size:158 final size:155
Alignment explanation
Indices: 35920885--35921284 Score: 379
Period size: 158 Copynumber: 2.5 Consensus size: 155
35920875 TAAGCATATG
* * *
35920885 GAGTTCATTCCCAGTCTAAGATCGAACCAAACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
1 GAGTTCATT-CCAGTCTAAGATCGGACC-AACCGAGGGTTGCGGCAGCAGGACCGGCAGCACGCA
* * * *
35920950 GGGGGGACTGGGCCGATCCCCGGCTTACGCATTCCACCTCTTTGGCGGCTGAGCGCCCGTACGCC
64 GAGGGGACTGGGCCGATCCCCGGCTTACGCATTCCACCGCTTTGGCGGCTGAGCACCCGTACACC
* **
35921015 CATTTCGTGGGTTGGCTTAGGCATAGG
129 CATTTCGTGGGTTGACTTAGGCATACA
* ** * * * * * ** * *
35921042 GAGTTCATTCCATGTCTACGCCCCAGTCGAACCCAGGGTTGTGGCAGTGGGACCGGCAGTATGCA
1 GAGTTCATTCCA-GTCTAAG-ATCGGACCAACCGAGGGTTGCGGCAGCAGGACCGGCAGCACGCA
* * * * *
35921107 GAGGGGACTGGGTCGATCCTCGGCTTGCGCATTATC-CCGCTTTGGTCGGCTTAGCACCCGTACA
64 GAGGGGACTGGGCCGATCCCCGGCTTACGCATT-CCACCGCTTTGG-CGGCTGAGCACCCGTACA
* *
35921171 CTCATTTCGTGGGTTGACTTATGCATACA
127 CCCATTTCGTGGGTTGACTTAGGCATACA
* * * * ** *
35921200 GAGTTCATTGCCAGTCTAAGTTTGGACCAGACCGATGGTTGCGGCAGCAGGATCGATAGCACACA
1 GAGTTCATT-CCAGTCTAAGATCGGACCA-ACCGAGGGTTGCGGCAGCAGGACCGGCAGCACGCA
* *
35921265 GAGCGGACCGGGCCGATCCC
64 GAGGGGACTGGGCCGATCCC
35921285 TGGCATGCAC
Statistics
Matches: 186, Mismatches: 51, Indels: 11
0.75 0.21 0.04
Matches are distributed among these distances:
156 3 0.02
157 83 0.45
158 97 0.52
159 3 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (155 bp):
GAGTTCATTCCAGTCTAAGATCGGACCAACCGAGGGTTGCGGCAGCAGGACCGGCAGCACGCAGA
GGGGACTGGGCCGATCCCCGGCTTACGCATTCCACCGCTTTGGCGGCTGAGCACCCGTACACCCA
TTTCGTGGGTTGACTTAGGCATACA
Found at i:35922385 original size:159 final size:158
Alignment explanation
Indices: 35922149--35922586 Score: 414
Period size: 158 Copynumber: 2.8 Consensus size: 158
35922139 GGATCCGTAA
* * * * * * * * * * *
35922149 CACGCAGGGGGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGCCCGGTTGAGCGCC
1 CACGCAAGGGGGACCGAGCCAATCCTCGGCTTGCACATTATGCCTCTCCAG-CCGGCTCAACGCC
* * * * **
35922214 TGCACGCCCATTTCGGGGGTTGGCTTAGGCATAGGGAGTTCATCCCATGTCTAAGCCCCAGTCGG
65 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGG
* * **
35922279 ACCAAGGGTTGTGGCAGCGGGACCGGTAG
130 ACCAAGGGTTGTGGAAGCAGGACCGACAG
* **
35922308 CACGCAGAGGGGGACCGAGCCAATCCTCGGCTTGCGCATTATGCCTCTCC-GATTGGCTCAACGC
1 CACGCA-AGGGGGACCGAGCCAATCCTCGGCTTGCACATTATGCCTCTCCAG-CCGGCTCAACGC
* ** ** *
35922372 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC-TAGTCTAAGATCGAACC
64 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT-GTCTAAGCCCCAACC
* * * **
35922436 GGATCGAGGGTTGTGGAAGTAGGATTGACAG
128 GGACCAAGGGTTGTGGAAGCAGGACCGACAG
* * * * * *
35922467 CACGCAAGGGGGATCGGGTCGATCCTCGGCTTGCACATTCTGCCTCTCCAGCCGGCTGAACGCCC
1 CACGCAAGGGGGACCGAGCCAATCCTCGGCTTGCACATTATGCCTCTCCAGCCGGCTCAACGCCC
* * *
35922532 GCACGCTCGTTTCATGGGTTGGCTTAGGCAT-GCGGAGTTCATTCCATATCTAAGC
66 GCACGCTCATTTCGTGGGTTGGCTTAGGCATAG-GGAGTTCATTCCATGTCTAAGC
35922587 ATACGGAGTT
Statistics
Matches: 223, Mismatches: 51, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
158 94 0.42
159 94 0.42
160 35 0.16
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (158 bp):
CACGCAAGGGGGACCGAGCCAATCCTCGGCTTGCACATTATGCCTCTCCAGCCGGCTCAACGCCC
GCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGA
CCAAGGGTTGTGGAAGCAGGACCGACAG
Found at i:35922550 original size:158 final size:157
Alignment explanation
Indices: 35922083--35922576 Score: 517
Period size: 159 Copynumber: 3.1 Consensus size: 157
35922073 CTCAATCTAA
* * * *
35922083 GCATATGGAGTTCATTCCCAGTCTAAGATTGAACCGGACCGAGGATTGCGGCAGTAGGATCCGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGTAGGAT-CG-A
* * * * * *
35922148 A-CACGCAGGGGGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGCCCGGTTGAGCG
64 AGCACGCAAGGGGGATCGGGCCGATCCTCGGCTTGCACATTCTGCCTCTCC-GACCGGCTGAACG
* * *
35922212 CCTGCACGCCCATTTCGGGGGTTGGCTTAG
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** * ** * ** * *
35922242 GCATAGGGAGTTCA-TCCCATGTCTAAGCCCCAGTCGGACCAAGGGTTGTGGCAGCGGGACCGGT
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGTAGGATC-GA
* * * * * ** *
35922306 AGCACGCAGAGGGGGACCGAGCCAATCCTCGGCTTGCGCATTATGCCTCTCCGATTGGCTCAACG
64 AGCACGCA-AGGGGGATCGGGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAACG
*
35922371 CCCGCACGCTCATTTCGTGGGTTGACTTAG
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * *
35922401 GCATACAGAGTTCATTCCTAGTCTAAGATCGAACCGGATCGAGGGTTGTGGAAGTAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGTAGGATCGA-A
*
35922466 GCACGCAAGGGGGATCGGGTCGATCCTCGGCTTGCACATTCTGCCTCTCC-AGCCGGCTGAACGC
65 GCACGCAAGGGGGATCGGGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGA-CCGGCTGAACGC
* *
35922530 CCGCACGCTCGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCATTTCGTGGGTTGGCTTAG
*
35922559 GCATGCGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
35922577 ATATCTAAGC
Statistics
Matches: 266, Mismatches: 62, Indels: 15
0.78 0.18 0.04
Matches are distributed among these distances:
157 1 0.00
158 96 0.36
159 130 0.49
160 39 0.15
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGTAGGATCGAAG
CACGCAAGGGGGATCGGGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAACGCCC
GCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:35922937 original size:157 final size:159
Alignment explanation
Indices: 35922649--35922940 Score: 378
Period size: 157 Copynumber: 1.8 Consensus size: 159
35922639 CAGGCCCAAT
* * *
35922649 AGCAGGATCGGTAGCACGTAGGGGGGGATCGGGCTGATCCCCGACTTGTACATTCTACCTCTCCG
1 AGCAGGATCGGTAGCACGCAGGGGGGGACCGGGCTGATCCCCGACTTGTACATTATACCTCTCCG
* ** * * *
35922714 ACCGGCTGAGTGCTTGCACGCACGTTTCATGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTC
66 ACCGGCTGAGCGCCCGCACGCACGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTC
35922779 TAAGCCTCGGTCAGACCGAGGGTTGTGGC
131 TAAGCCTCGGTCAGACCGAGGGTTGTGGC
* * *
35922808 AGCAGGATCGGTAGCACGCA-GGGGGGACCGGGTTGATCCCC-AGCTT-TCGCATTATGCCTCTC
1 AGCAGGATCGGTAGCACGCAGGGGGGGACCGGGCTGATCCCCGA-CTTGT-ACATTATACCTCTC
* * * *
35922870 CGATCGGCTGA-CGCCCGGACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-
64 CGACCGGCTGAGCGCCCGCACGCACGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCAT
35922933 GTCTAAGC
128 GTCTAAGC
35922941 ATATGGAGTT
Statistics
Matches: 114, Mismatches: 16, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
157 49 0.43
158 46 0.40
159 19 0.17
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.24
Consensus pattern (159 bp):
AGCAGGATCGGTAGCACGCAGGGGGGGACCGGGCTGATCCCCGACTTGTACATTATACCTCTCCG
ACCGGCTGAGCGCCCGCACGCACGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTC
TAAGCCTCGGTCAGACCGAGGGTTGTGGC
Found at i:35922949 original size:26 final size:26
Alignment explanation
Indices: 35922913--35922965 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35922903 GTTGACTTAG
*
35922913 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
35922939 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
35922965 G
1 G
35922966 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:35923816 original size:26 final size:26
Alignment explanation
Indices: 35923786--35923838 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35923776 GTTGACTTAG
*
35923786 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
35923812 GCATACGAAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
35923838 G
1 G
35923839 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:35924685 original size:26 final size:26
Alignment explanation
Indices: 35924655--35924705 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
35924645 TTGACTTAGG
* *
35924655 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACGAAGTTCATCCCCAATCTAAC
*
35924681 CATACGAAGTTCATTCCCAATCTAA
1 CATACGAAGTTCATCCCCAATCTAA
35924706 GATGAGACTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.25
Consensus pattern (26 bp):
CATACGAAGTTCATCCCCAATCTAAC
Found at i:35925096 original size:157 final size:158
Alignment explanation
Indices: 35924681--35925213 Score: 376
Period size: 158 Copynumber: 3.4 Consensus size: 158
35924671 CCAGTCTAAC
* * * * * * * *
35924681 CATACGAAGTTCATTCCCAATCTAAGATGAGACTGGATCGA-GGCATACGGCAGCAGGATCGATA
1 CATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGC-TGCGCCAGCAGGATTGACA
* * * * * * * ** * * *
35924745 GCACGTA-GGGGGACCGAGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGCTAAGCACC
65 GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCAACTCAGCGCT
* * * * * *
35924809 CGCAACGCCCGTTTCGTGGGTTGGCTTAGC
130 CGC-ACACTCATTTCATGGGTTGACTTAGG
* * ** * * * * ** * * *
35924839 CATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CTGGACCTAAGGTTATGGCAGCGGGATCGAC
1 CATACGGAGTTCATTCCCA-ATCTAAG-ATCAGACCGGACCGAGGGCTGCGCCAGCAGGATTGAC
* * ** *
35924902 AACACACAGAGGGGGATTTGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCAATTCAGC
64 AGCACGCAG-GGGGGA-CCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCAACTCAGC
* * **
35924967 -ATCTGCACGCTCATTTTGTGGGTTGACTTAGG
127 GCTC-GCACACTCATTTCATGGGTTGACTTAGG
* * * *
35924999 C-TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGCTGCGGCAGTAGGATTGACAG
1 CATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGCTGCGCCAGCAGGATTGACAG
* * * **** *
35925063 CACGCAGGGGGGACCGGGTGGATCCCTGGCTTGCGCATTTTGCCTCTCCGGTTGGCTGAGCGCTC
66 CACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCAACTCAGCGCTC
* *
35925128 GCACACTCGTTTCATGGGTTGGCTTAGG
131 GCACACTCATTTCATGGGTTGACTTAGG
* * *
35925156 CATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTGCGCCAGCAGGA
1 CATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGCTGCGCCAGCAGGA
35925214 CCAGTAGCAG
Statistics
Matches: 291, Mismatches: 73, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
157 64 0.22
158 106 0.36
159 51 0.18
160 32 0.11
161 38 0.13
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (158 bp):
CATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGCTGCGCCAGCAGGATTGACAG
CACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCAACTCAGCGCTC
GCACACTCATTTCATGGGTTGACTTAGG
Found at i:35925821 original size:137 final size:138
Alignment explanation
Indices: 35925580--35925834 Score: 316
Period size: 137 Copynumber: 1.9 Consensus size: 138
35925570 GACGCAGGAT
* * *
35925580 CGACAGCAAGCAGGGGGGGGACAGGCCCGATCCCCGGCTTGCGCATTCTTCCTCTCCGACCGTCT
1 CGACAGCAAGCAGGAGGGGGACAGGCCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGTCT
* * * * * *
35925645 GAGTGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGACTTCATTCCATGTCTTGTGGC
66 CAGTGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATACGGACTTCATTCCATGTCTTGTGGC
35925710 AGCGGGAC
131 AGCGGGAC
* * ** ** *
35925718 CGACAGCACGCA-GAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTTGGCCAG-C
1 CGACAGCAAGCAGGAGGGGGACAGGCCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACC-GTC
* * *
35925781 TCAGTGCCCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCC
65 TCAGTGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATACGGACTTCATTCC
35925835 CAGTCTAAGA
Statistics
Matches: 97, Mismatches: 19, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
137 85 0.88
138 12 0.12
ACGTcount: A:0.16, C:0.31, G:0.31, T:0.23
Consensus pattern (138 bp):
CGACAGCAAGCAGGAGGGGGACAGGCCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGTCT
CAGTGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATACGGACTTCATTCCATGTCTTGTGGC
AGCGGGAC
Found at i:35925992 original size:159 final size:159
Alignment explanation
Indices: 35925703--35926002 Score: 422
Period size: 159 Copynumber: 1.9 Consensus size: 159
35925693 ATTCCATGTC
* * *
35925703 TTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGC
1 TTGTGGCAGCAGGACCGACAGCACACAGAGGGGGACCGGGTCGATCCCCGGCTTGCACATTATGC
* * * *
35925768 CTCTTTGGCCAGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATT
66 CTCTTCGACCAGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATT
35925833 CCCA-GTCTAAGATCAGATCAGACTGAGGG
131 -CCATGTCTAAGATCAGATCAGACTGAGGG
* * * ** *
35925862 TTGTGGCAGCAGGATCGATAGCACACAGGGGGGGATTGGGTCGATCCCCGGCTTGCACATTCTGC
1 TTGTGGCAGCAGGACCGACAGCACACAGAGGGGGACCGGGTCGATCCCCGGCTTGCACATTATGC
* * ** *
35925927 CTCTTCGACCGGCTGAGTGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATT
66 CTCTTCGACCAGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATT
35925992 CCATGTCTAAG
131 CCATGTCTAAG
35926003 CATACGAAGT
Statistics
Matches: 122, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
158 3 0.02
159 119 0.98
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
TTGTGGCAGCAGGACCGACAGCACACAGAGGGGGACCGGGTCGATCCCCGGCTTGCACATTATGC
CTCTTCGACCAGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATT
CCATGTCTAAGATCAGATCAGACTGAGGG
Found at i:35926738 original size:26 final size:26
Alignment explanation
Indices: 35926708--35926760 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35926698 GTTGACTTAG
* *
35926708 GCATACGGAGTTCATCCCCTGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
35926734 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
35926760 G
1 G
35926761 ATTAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:35927201 original size:157 final size:156
Alignment explanation
Indices: 35926734--35927235 Score: 431
Period size: 159 Copynumber: 3.2 Consensus size: 156
35926724 CCCTGTCTAA
* * *
35926734 GCATACGAAGTTCATTCCCA-GTCTAAGATTAGACCGGACTGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGA-TAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * ** ** **
35926798 AGCACACAAGGGGGGACCGGGCCGATCCCCGTCTTGCGTATTCAACCTCTCCGACCGACTGAGCG
64 AGCACGCAA-GGGGGACCGGGCCGATCCCCGACTTGCACATTCTGCCTCTTAGACCG-CTGAGCG
* * * * *
35926863 CCAGCACGCCCGTTTCGTGGGTTGGCATAG
127 CCAGTACACTCGTTTCGTGGGTTGACTTAG
** * * * * * * * * *
35926893 GCATATTGAGTTCATTGCATGTCTAAGCCACAG-TCAGATCGAGGGTTGTGGTAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAG--ATAGACCGGACCGAGGGTTGCGGCAGCAGGATC-GA
* * * * * * * *
35926956 CAACACGCAGAGGGGGACCGCGTCGATCCCCAGA-TTGTACATTATGCCTCTTCAGTCGGCTCAG
63 CAGCACGCA-AGGGGGACCGGGCCGATCCCC-GACTTGCACATTCTGCCTCTT-AGACCGCTGAG
* * * *
35927020 TGCCTGTA-AGGTCGTTTCGTGGGTTGACTTAT
125 CGCCAGTACA-CTCGTTTCGTGGGTTGACTTAG
* *
35927052 GCATACGGAGTTCATTCCCA-GTCTAAGATGGACCGGACCGAGGGTTGCGGCAGCAAGATCGACA
1 GCATACGGAGTTCATT-CCATGTCTAAGATAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
*
35927116 GCACGCAAGGGGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTTAGACCAGCTGAGCGCC
65 GCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCACATTCTGCCTCTTAGACC-GCTGAGCGCC
* * * *
35927181 CGTACACTCATTTTGTGGGTTGTCTTAG
129 AGTACACTCGTTTCGTGGGTTGACTTAG
35927209 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
35927236 CATACGAAGT
Statistics
Matches: 260, Mismatches: 68, Indels: 32
0.72 0.19 0.09
Matches are distributed among these distances:
156 8 0.03
157 87 0.33
158 32 0.12
159 123 0.47
160 9 0.03
161 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAAGGGGGACCGGGCCGATCCCCGACTTGCACATTCTGCCTCTTAGACCGCTGAGCGCCAG
TACACTCGTTTCGTGGGTTGACTTAG
Found at i:35927239 original size:26 final size:26
Alignment explanation
Indices: 35927209--35927261 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35927199 GTTGTCTTAG
*
35927209 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
35927235 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
35927261 G
1 G
35927262 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:35928474 original size:158 final size:157
Alignment explanation
Indices: 35928021--35928617 Score: 454
Period size: 158 Copynumber: 3.7 Consensus size: 157
35928011 GCTCGATAGG
* * * *
35928021 CAGCACCCA-AGGGGAATCGGGCTGATCCCC-AGCTTGCGCATTCTACCTCTTCGGTCGGCTGAG
1 CAGCACGCAGAGGGG-ATCGGGCTGATCCCCGA-CTTGCGCATTATACCTCTCCGATCGGCTGA-
* * * * * * *
35928084 CGACCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCTCCAG
63 CGACCACACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCACCAG
* * * * * *
35928149 TCAGATCGAGGGTTGTGGCAGC-GGATTGA
128 TCAGACCGAGGTTTGCGACAACAGGATCGA
* * * * * * * *
35928178 CAGCACACAGAAAGGGATCGGGC-CAGTCCCCGAGTTGCGCATTATGCCACTTCGATTC-GCTCA
1 CAGCACGCAG-AGGGGATCGGGCTGA-TCCCCGACTTGCGCATTATACCTCTCCGA-TCGGCTGA
* * * * * * * *
35928241 GTGCCCACACGCTCCTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCC-TAGGCTAAG-ATC
63 -CGACCACACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCAT-GTCTAAGCACC
*
35928304 GGATCAGACCGAGGTTTGCGACAACAGGATCGA
126 AG-TCAGACCGAGGTTTGCGACAACAGGATCGA
* * * * * *
35928337 CAGGACGCAGAGGGGACCGGGCTGATCCCCGACTTACGAATTCTACCTCTCCGATCGGTTGACTG
1 CAGCACGCAGAGGGGATCGGGCTGATCCCCGACTTGCGCATTATACCTCTCCGATCGGCTGAC-G
* * * *
35928402 ACCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCC
65 ACCACACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCACCAGTC
* * *
35928467 GGACCGAGGGTTGTGGCAGCAGGACCGACAGTGAGATCGG
130 AGACCGA-GGTT-T----GC--GA-CAACA--G-GATCGA
* * *
35928507 CAGCATGCAGACGGGGATCGGGCTGATCCCTGACTTGCGCATTATGCCTCTCCGATCGGCTGA-G
1 CAGCACGCAGA-GGGGATCGGGCTGATCCCCGACTTGCGCATTATACCTCTCCGATCGGCTGACG
*
35928571 CACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
65 -A-CCACACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCAT
35928618 CCCCAATCTA
Statistics
Matches: 343, Mismatches: 69, Indels: 42
0.76 0.15 0.09
Matches are distributed among these distances:
157 14 0.04
158 189 0.55
159 29 0.08
160 1 0.00
164 2 0.01
166 2 0.01
167 4 0.01
169 2 0.01
170 15 0.04
171 85 0.25
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
CAGCACGCAGAGGGGATCGGGCTGATCCCCGACTTGCGCATTATACCTCTCCGATCGGCTGACGA
CCACACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCACCAGTCA
GACCGAGGTTTGCGACAACAGGATCGA
Found at i:35928640 original size:26 final size:26
Alignment explanation
Indices: 35928603--35928655 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35928593 GTTGACTTAG
35928603 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
35928629 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
35928655 G
1 G
35928656 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:35928944 original size:158 final size:158
Alignment explanation
Indices: 35928782--35929133 Score: 374
Period size: 158 Copynumber: 2.2 Consensus size: 158
35928772 TTTGGGTTGG
* * * * * *
35928782 CTTATGGATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCA-GACCGAGGGTTGTGGCAGTGGGA
1 CTTATGGATACGGAGTTCATTCCATGTCTAAG-CATAGCAAGGACCAAGGGTTGCGGCAGTAGGA
** * *
35928846 CCGACAACACGTAGTGGGGGACCGGGTCGATCTC-GGCTTGCGCATTATGCCTCT-TCGGCCGGC
65 CCGACAACACACA-AGGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCT-GGCCGGC
* *
35928909 TCAGCACCCGTATGCTCGTTTCGTGGATTGA
128 TCAGCACCCGCATGCTCATTTCGTGGATTGA
* * * *
35928940 CTTATGCATACGGAGTTCATTCC-TAGTCTAAG-ATCGGAATGGACCAAGGGTTGCGGTAGTAGG
1 CTTATGGATACGGAGTTCATTCCAT-GTCTAAGCATAGCAA-GGACCAAGGGTTGCGGCAGTAGG
* * * * * *
35929003 ATCGACAGCACACAAGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGTCGGTT
64 ACCGACAACACACAAGGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCTGGCCGGCT
* * *
35929068 GAGCACCCGCATGCTCATTTCGTGGGTTGG
129 CAGCACCCGCATGCTCATTTCGTGGATTGA
*
35929098 CTTA-GGCGTACGGAGTTCATTCCATGTCTAAGCATA
1 CTTATGG-ATACGGAGTTCATTCCATGTCTAAGCATA
35929134 CGGAGTTCAT
Statistics
Matches: 158, Mismatches: 28, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
156 3 0.02
157 19 0.12
158 132 0.84
159 4 0.03
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (158 bp):
CTTATGGATACGGAGTTCATTCCATGTCTAAGCATAGCAAGGACCAAGGGTTGCGGCAGTAGGAC
CGACAACACACAAGGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCTGGCCGGCTCA
GCACCCGCATGCTCATTTCGTGGATTGA
Found at i:35929855 original size:26 final size:26
Alignment explanation
Indices: 35929826--35929878 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35929816 GTTGACTTAG
*
35929826 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
35929852 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
35929878 G
1 G
35929879 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:35930331 original size:158 final size:156
Alignment explanation
Indices: 35929859--35930669 Score: 597
Period size: 159 Copynumber: 5.1 Consensus size: 156
35929849 TAAGCATATA
* * * * * * * *
35929859 GAGTTCATTCCCAGTCTAAGATCGGA-TCGGATCGAGGGTTGCAGCAGTAGGATCAACAACACGC
1 GAGTTCATTCCTAGTCTAAGATCAGACT-GGACCGAGGGTT-CTGTAGCAGGATCGACAGCACGC
* * * * *
35929923 AGGGGGGATCGGGCCGATCTCCGGCTTACGCATTCTGCCTCTTCGACC-AGCTGAGAGCCCGCAC
64 AGGGGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGACCGA-CTGAGCGCCCGCAC
* ** *
35929987 GCCTGTTTCAAGGGTTGGCTTAGGCATAGG
128 GTC-GTTTCGTGGGTTGGCTTAGGCATACG
** * * * * * *
35930017 GAGTTCATTCC-ATGTCTAAGCCCTAG-CTGGACCGAAGGCTGTGGCAGCAGGACCGGCAGCACG
1 GAGTTCATTCCTA-GTCTAAGATC-AGACTGGACCGAGGGTTCT-GTAGCAGGATCGACAGCACG
* ** * * *
35930080 CAGAGAGGGACC-GAGCCGATCCCCGGCTTGTGCATTATGCCTCTTCGACCGGCTCAGCACCCGC
63 CAG-GGGGGACCAG-GCCGATCCCCGGCTTACGCATTATGCCTCTTCGACCGACTGAGCGCCCGC
* * *
35930144 ACGCTCATTTCGTGGGTTGACTTATGCATACG
126 ACG-TCGTTTCGTGGGTTGGCTTAGGCATACG
* *
35930176 GAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTACTGTAGTAGGATCGATAGCACGCA
1 GAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTT-CTGTAGCAGGATCGACAGCACGCA
** * * * * **
35930241 GGGGGGACCAGGCCGATCCTTGGCTTACGTATTCTGCTTCTTCGACTGACTGAGCGCTTGCACGT
65 GGGGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGACCGACTGAGCGCCCGCACGT
* *
35930306 ACGTTTCATGGGTTGGCTTAGGCATAGG
130 -CGTTTCGTGGGTTGGCTTAGGCATACG
** ** * * * *
35930334 GAGTTCATTCC-ATGTCTAAGCCCTAG-CCAGACCGAGGGTTGTGGTAG-GGAGACCGATAGCAC
1 GAGTTCATTCCTA-GTCTAAGATC-AGACTGGACCGAGGGTTCT-GTAGCAG-GATCGACAGCAC
* * * * * * * *
35930396 GTAGAGGGGGACCAAGTCGATCCCCGGCTTATGCAATATGCCTCTTCGGCTTG-CTCAGCGCCCG
62 GCAG-GGGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGAC-CGACTGAGCGCCCG
* * * * *
35930460 TACGCTCGTTTTGTGGGTTGACTTATGCATAAG
125 CACG-TCGTTTCGTGGGTTGGCTTAGGCATACG
*
35930493 GAGTTCATTCCTAGTCTAAGATCAGA-TCGGACCGAGGGTTGC-GATAGCAGGATCGACAGCATG
1 GAGTTCATTCCTAGTCTAAGATCAGACT-GGACCGAGGGTT-CTG-TAGCAGGATCGACAGCACG
* * * * * * * * *
35930556 CAGGGGGGACCGGGTCAATCCCTGGCTTGCGCATT-TGCCT-TTATGGCCGACTGGGCGCCTGCA
63 CAGGGGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCTCTT-CGACCGACTGAGCGCCCGCA
35930619 CGTTCGTTTCGTGGGTTGGCTTAGGCATACG
127 CG-TCGTTTCGTGGGTTGGCTTAGGCATACG
*
35930650 GAGGTCATTCCGT-GTCTAAG
1 GAGTTCATTCC-TAGTCTAAG
35930670 CATACAAAGT
Statistics
Matches: 509, Mismatches: 115, Indels: 59
0.75 0.17 0.09
Matches are distributed among these distances:
156 3 0.01
157 65 0.13
158 196 0.39
159 237 0.47
160 8 0.02
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (156 bp):
GAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTCTGTAGCAGGATCGACAGCACGCAG
GGGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGACCGACTGAGCGCCCGCACGTC
GTTTCGTGGGTTGGCTTAGGCATACG
Found at i:35930438 original size:317 final size:315
Alignment explanation
Indices: 35929859--35930670 Score: 988
Period size: 317 Copynumber: 2.6 Consensus size: 315
35929849 TAAGCATATA
* * * * * *
35929859 GAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCAGCAGTAGGATCAACAACACGCA
1 GAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGC-GTAGTAGGATCGACAGCACGCA
* * * * * *
35929924 GGGGGGATCGGGCCGAT-CTCCGGCTTACGCATTCTGCCTCTTCGACCAGCTGAGAGCCCGCACG
65 GGGGGGACCGGGCCGATCCT-TGGCTTACGCATTCTGCTTCTTCGACGA-CTGAGCGCCTGCACG
* * **
35929988 -CCTGTTTCAAGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTGGACCGA
128 TAC-GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGA
* * * *
35930052 AGGCTGTGGCAGCAGGACCGGCAGCACGCAGAGAGGGACCGAGCCGATCCCCGGCTTGTGCATTA
192 AGGCTGTGGCAGCAGGACCGACAGCACGCAGAGAGGGACCAAGCCGATCCCCGGCTTATGCAATA
*
35930117 TGCCTCTTCGACCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTATGCATACG
257 TGCCTCTTCGACCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTATGCATAAG
* *
35930176 GAGTTCATTCCTAGTCTAAGATCAGA-CTGGACCGAGGGTTACTGTAGTAGGATCGATAGCACGC
1 GAGTTCATTCCTAGTCTAAGATCAGATC-GGACCGAGGGTTGC-GTAGTAGGATCGACAGCACGC
* * *
35930240 AGGGGGGACCAGGCCGATCCTTGGCTTACGTATTCTGCTTCTTCGACTGACTGAGCGCTTGCACG
64 AGGGGGGACCGGGCCGATCCTTGGCTTACGCATTCTGCTTCTTCGAC-GACTGAGCGCCTGCACG
*
35930305 TACGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAG
128 TACGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAA
* * * * * * *
35930370 GGTTGTGGTAG-GGAGACCGATAGCACGTAGAGGGGGACCAAGTCGATCCCCGGCTTATGCAATA
193 GGCTGTGGCAGCAG-GACCGACAGCACGCAGAGAGGGACCAAGCCGATCCCCGGCTTATGCAATA
* ** * * * *
35930434 TGCCTCTTCGGCTTGCTCAGCGCCCGTACGCTCGTTTTGTGGGTTGACTTATGCATAAG
257 TGCCTCTTCGACCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTATGCATAAG
* *
35930493 GAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCGATAGCAGGATCGACAGCATGCA
1 GAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCG-TAGTAGGATCGACAGCACGCA
* * * * * * *
35930558 GGGGGGACCGGGTCAATCCCTGGCTTGCGCATT-TGCCTT-TATGGCCGACTGGGCGCCTGCACG
65 GGGGGGACCGGGCCGATCCTTGGCTTACGCATTCTG-CTTCT-TCGACGACTGAGCGCCTGCACG
* * * * *
35930621 TTCGTTTCGTGGGTTGGCTTAGGCATACGGAGGTCATTCCGTGTCTAAGC
128 TACGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
35930671 ATACAAAGTT
Statistics
Matches: 425, Mismatches: 61, Indels: 19
0.84 0.12 0.04
Matches are distributed among these distances:
316 66 0.16
317 354 0.83
318 5 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (315 bp):
GAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCGTAGTAGGATCGACAGCACGCAG
GGGGGACCGGGCCGATCCTTGGCTTACGCATTCTGCTTCTTCGACGACTGAGCGCCTGCACGTAC
GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAAGGC
TGTGGCAGCAGGACCGACAGCACGCAGAGAGGGACCAAGCCGATCCCCGGCTTATGCAATATGCC
TCTTCGACCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTATGCATAAG
Found at i:35931683 original size:159 final size:157
Alignment explanation
Indices: 35931339--35931709 Score: 394
Period size: 159 Copynumber: 2.3 Consensus size: 157
35931329 TGAGCACCCA
* * *
35931339 CACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCAAAGATCAGATCGGAC
1 CACG-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGATCGGAC
* * * * * *
35931404 TGAGGGTTGCAACAGCAGGATTGGCAGCACACAGGGGGGATCAGGTCGATTCTCGACTTGCGTAT
65 CGAGGGTTGCAACAGCAGGATCGGCAGCACACAGGGGGGATCAGGTCGATTCCCGACCTACGCAT
* *
35931469 TCTGCCTCTCTGACCGGCTAAGCGCCCG
130 TATGCCTCTCTGACCGGCTAAGCGACCG
* * * *
35931497 CACGTCCGTTTCATGGGTT-AGCTTAGGCAAAGGGAGTTCATT-CCATGTCTAAGCCCTAG-TCG
1 CACGT-CGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCCA-GTCTAAGACC-AGATCG
*** * * *
35931559 GACCGAGGGTTGTGGCAGCAGGATCGGCAGCACATAGAGGGGGA-CCGCGTCGA-TCACCGGCCT
62 GACCGAGGGTTGCAACAGCAGGATCGGCAGCACACAG-GGGGGATCAG-GTCGATTC-CCGACCT
* * *
35931622 ACGCGTTATGCCTCT-TCGACTGGCTCAGCGACCG
124 ACGCATTATGCCTCTCT-GACCGGCTAAGCGACCG
35931656 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
1 CACG-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
35931710 TCGGATCAGA
Statistics
Matches: 174, Mismatches: 28, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
157 5 0.03
158 80 0.46
159 84 0.48
160 5 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
CACGTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGATCGGACC
GAGGGTTGCAACAGCAGGATCGGCAGCACACAGGGGGGATCAGGTCGATTCCCGACCTACGCATT
ATGCCTCTCTGACCGGCTAAGCGACCG
Found at i:35932248 original size:26 final size:26
Alignment explanation
Indices: 35932218--35932269 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
35932208 GTTGACTTAG
35932218 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
35932244 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35932270 AATTGGATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35932534 original size:158 final size:158
Alignment explanation
Indices: 35932285--35932586 Score: 394
Period size: 158 Copynumber: 1.9 Consensus size: 158
35932275 GATCGGATCG
* * * *
35932285 AGGGTTGTGGCAGCAGGATCGATAGCACGCAGGGGGGATCGAGTTGATCCTCGACTTGCACATTC
1 AGGGTTGTGGCAACAGGATCGACAGCACGCAGGGGGGATCGAGTCGATCCCCGACTTGCACATTC
* * * * * * *
35932350 TGCCTCTCTGACCGGCTGAACGCCCGCAC-GTCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
66 TACCTCTCCGACCGACTGAACACCCGCACACTC-GTTTCATGGGTTGGCTTAGGCATACGGAATT
35932414 CATTCCATGTCTAAGCCCCAGCCAAACCA
130 CATTCCATGTCTAAGCCCCAGCCAAACCA
* * * * *
35932443 AGGGTTGTGGCAACGGGA-CTGACAGCACGTAGGGGGGA-CTGGGTCGATCCCCGGCTTGCGCAT
1 AGGGTTGTGGCAACAGGATC-GACAGCACGCAGGGGGGATC-GAGTCGATCCCCGACTTGCACAT
* *
35932506 TCTACCTCTCCGACCGACTGAGCACCCGCACACTCGTTTTATGGGTTGGCTTAGGCATACGGAAT
64 TCTACCTCTCCGACCGACTGAACACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAAT
35932571 TCATTCCATGTCTAAG
129 TCATTCCATGTCTAAG
35932587 ATTTTTAGCC
Statistics
Matches: 123, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
157 2 0.02
158 119 0.97
159 2 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
AGGGTTGTGGCAACAGGATCGACAGCACGCAGGGGGGATCGAGTCGATCCCCGACTTGCACATTC
TACCTCTCCGACCGACTGAACACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAATTC
ATTCCATGTCTAAGCCCCAGCCAAACCA
Found at i:35945257 original size:26 final size:26
Alignment explanation
Indices: 35945221--35945273 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35945211 ATTGACTTAG
35945221 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
35945247 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35945273 G
1 G
35945274 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35945617 original size:26 final size:26
Alignment explanation
Indices: 35945588--35945640 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35945578 GTTGACTTAG
35945588 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
35945614 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35945640 G
1 G
35945641 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35945959 original size:26 final size:26
Alignment explanation
Indices: 35945930--35945982 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35945920 GTTGACTTAG
35945930 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
35945956 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35945982 G
1 G
35945983 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35946266 original size:343 final size:341
Alignment explanation
Indices: 35945212--35946299 Score: 1265
Period size: 343 Copynumber: 3.1 Consensus size: 341
35945202 GTTTTGTGCA
35945212 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
1 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * *
35945277 GGATCGGACCAAGGGTTGC-AGCAACAGGATTG-CTAGCATGCAGGGGGG-CCAGGCCGATCCCC
66 GGATCGGACCAAGGGTTGCGA-CAACAGGATCGAC-AGCACGCAGGGGGGACC-GGCTGATCCCC
* * * * * *
35945339 GACTTGCGCATTTTGCCTCTCCGTCCGACTAAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
128 GGCTTGCGCATTTTGCCTCTCCGACCGGCTGAGCG-CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
35945404 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCAGGACCGGCA
192 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGA-C--C-
*
35945469 GTGGGATCGACAGCACGCAGAGGGGGA-TCGAGCTGATCCCTGGCTTGCGCATTATGCCTCTTCG
253 ---GG-T----AGCACGCAGAGGGGGACTCG-GCTGATCCCCGGCTTGCGCATTATGCCTCTTC-
* ** *
35945533 GTCAGCCTCTTTGGCCGGTTGAGCACCCGCACGCTTGTTCCATGGG
308 G---G-C-C---GG-C---TGAGCGCCCGCACGCTCATTTCATGGG
35945579 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
1 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * ** * *
35945644 GGATCGGATCAAGGGTTGTGACAGTAGGATCGACAGCACGCAGGGGGGACCGGGTCAATCCCCGG
66 GGATCGGACCAAGGGTTGCGACAACAGGATCGACAGCACGCAGGGGGGACCGGCT-GATCCCCGG
* ** * *
35945709 CTTGCGCATTTTGCTTCTTTGACCGGTTGAGTC-CCACACGCTCGTTTCGTGGGTTGGCTTAGGC
130 CTTGCGCATTTTGCCTCTCCGACCGGCTGAG-CGCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * * *
35945773 ATAGGGATTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGAGATCGGTAGC
194 ATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGTAGC
* * * * *
35945838 ACGCAGAGGGGGAC-CGGGTCGATCCCCGGCTTACGTATTATGCCTCTTCGGCCGACTGACCGCC
259 ACGCAGAGGGGGACTCGGCT-GATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCGCC
* *
35945902 CGTACGCTCATTTCGTGGG
323 CGCACGCTCATTTCATGGG
35945921 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
1 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
35945986 GGATCGAACCGAGGGTTGCGACAACAGGATCGACAGTACGTAGGGGGGACCGCGCTGATCCCCGG
66 GGATCGGACCAAGGGTTGCGACAACAGGATCGACAGCACGCAGGGGGGACCG-GCTGATCCCCGG
* * *
35946051 CTTGCGCATTCTGCCTCTCCCG-CCGGCTGAGCGCCTGTACGCCCGTTTCGTGGGTTGGCTTAGG
130 CTTGCGCATTTTGCCTCT-CCGACCGGCTGAGCGCC-GCACGCTCGTTTCGTGGGTTGGCTTAGG
* * * *
35946115 CATATGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGTGGGACCGGTAG
193 CATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGTAG
* * * * *
35946180 CACGTAGAGGGGGACTAGGCTGATCCCCGACTTGCACATTATGCCTCTTCGGCCGGCTCAGCGCC
258 CACGCAGAGGGGGACTCGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCGCC
35946245 CGCACGCTCATTTCATGGG
323 CGCACGCTCATTTCATGGG
* * *
35946264 TTGACATATGCATACGGAGTTCA-CTTCCAGTCTAAG
1 TTGACTTAGGCATACGGAGTTCATC-CCCAGTCTAAG
35946300 ATCAGACTGG
Statistics
Matches: 629, Mismatches: 79, Indels: 50
0.83 0.10 0.07
Matches are distributed among these distances:
341 1 0.00
342 164 0.26
343 185 0.29
344 3 0.00
345 1 0.00
346 1 0.00
349 1 0.00
350 1 0.00
351 1 0.00
354 3 0.00
355 44 0.07
359 1 0.00
360 2 0.00
364 1 0.00
367 185 0.29
368 35 0.06
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (341 bp):
TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
GGATCGGACCAAGGGTTGCGACAACAGGATCGACAGCACGCAGGGGGGACCGGCTGATCCCCGGC
TTGCGCATTTTGCCTCTCCGACCGGCTGAGCGCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
ACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGTAGCAC
GCAGAGGGGGACTCGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCGCCCGC
ACGCTCATTTCATGGG
Found at i:35946335 original size:343 final size:341
Alignment explanation
Indices: 35945212--35946308 Score: 962
Period size: 367 Copynumber: 3.1 Consensus size: 341
35945202 GTTTTGTGCA
* * * * * *
35945212 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
1 TTGACATAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGACTGCA-TCCAAGTCTAAGAGC
* * * * *
35945277 GGATCGGACCAAGGGTTGC-AGCAACAGGATTG-CTAGCATGCAGGGGGG-CCAGGC-CGATCCC
65 GGATCGAACCGAGGGTTGCGA-CAACAGGATCGAC-AGCACGCAGGGGGGACC-GGCTCAATCCC
* * * * * * * *
35945338 CGACTTGCGCATTTTGCCTCTCCGTCCGACTAAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTA
127 CGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGT-CCCACACGCCCGTTTCGTGGGTTGGCTTA
* * * **
35945403 GGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGC-AGGACCGG
191 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCGA-GA-C--
* * * *
35945467 CAGTGGGATCGACAGCACGCAGAGGGGGATC-GAGCT-GATCCCTGGCTTGCGCATTATGCCTCT
252 C----GG-T----AGCACGCAGAGGGGGA-CAG-GCTCGATCCCCGACTTACACATTATGCCTCT
* * * ** *
35945530 TCGGTCAGCCTCTTTGGCCGGTTGAGCACCCGCACGCTTGTTCCATGGG
306 TCGG-CCGACTC----ACC------G--CCCGCACGCTCATTTCATGGG
* * * * * *
35945579 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
1 TTGACATAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGACTGCA-TCCAAGTCTAAGAGC
* * * * ** *
35945644 GGATCGGATCAAGGGTTGTGACAGTAGGATCGACAGCACGCAGGGGGGACCGGGTCAATCCCCGG
65 GGATCGAACCGAGGGTTGCGACAACAGGATCGACAGCACGCAGGGGGGACCGGCTCAATCCCCGG
* * ** * *
35945709 CTTGCGCATTTTGCTTCTTTGACCGGTTGAGTCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCA
130 CTTGCGCATTCTGCCTCTCCGACCGGCTGAGTCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCA
* * * *
35945774 TAGGGATTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGAGATCGGTAGCA
195 TAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCGAGACCGGTAGCA
* * * ** *
35945839 CGCAGAGGGGGACCGGGTCGATCCCCGGCTTACGTATTATGCCTCTTCGGCCGACTGACCGCCCG
260 CGCAGAGGGGGACAGGCTCGATCCCCGACTTACACATTATGCCTCTTCGGCCGACTCACCGCCCG
* *
35945904 TACGCTCATTTCGTGGG
325 CACGCTCATTTCATGGG
* * * * * *
35945921 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
1 TTGACATAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGACTGCA-TCCAAGTCTAAGAGC
* * *
35945986 GGATCGAACCGAGGGTTGCGACAACAGGATCGACAGTACGTAGGGGGGACCGCGCT-GATCCCCG
65 GGATCGAACCGAGGGTTGCGACAACAGGATCGACAGCACGCAGGGGGGACCG-GCTCAATCCCCG
**
35946050 GCTTGCGCATTCTGCCTCTCCCG-CCGGCTGAG-CGCCTGTACGCCCGTTTCGTGGGTTGGCTTA
129 GCTTGCGCATTCTGCCTCT-CCGACCGGCTGAGTC-CC-ACACGCCCGTTTCGTGGGTTGGCTTA
* * *
35946113 GGCATATGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGTGGGACCGGT
191 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCGAGACCGGT
* * * *
35946178 AGCACGTAGAGGGGGACTAGGCT-GATCCCCGACTTGCACATTATGCCTCTTCGGCCGGCTCAGC
256 AGCACGCAGAGGGGGAC-AGGCTCGATCCCCGACTTACACATTATGCCTCTTCGGCCGACTCACC
35946242 GCCCGCACGCTCATTTCATGGG
320 GCCCGCACGCTCATTTCATGGG
* *
35946264 TTGACATATGCATACGGAGTTCA-CTTCCAGTCTAAG-AT-CAGACTG
1 TTGACATAGGCATACGGAGTTCATC-CCCAGTCTAAGCATACAGACTG
35946309 GACCAAGGGT
Statistics
Matches: 638, Mismatches: 79, Indels: 52
0.83 0.10 0.07
Matches are distributed among these distances:
341 5 0.01
342 162 0.25
343 185 0.29
344 4 0.01
350 2 0.00
354 7 0.01
355 45 0.07
359 1 0.00
360 2 0.00
364 1 0.00
367 186 0.29
368 38 0.06
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (341 bp):
TTGACATAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGACTGCATCCAAGTCTAAGAGCG
GATCGAACCGAGGGTTGCGACAACAGGATCGACAGCACGCAGGGGGGACCGGCTCAATCCCCGGC
TTGCGCATTCTGCCTCTCCGACCGGCTGAGTCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCAT
AGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCGAGACCGGTAGCAC
GCAGAGGGGGACAGGCTCGATCCCCGACTTACACATTATGCCTCTTCGGCCGACTCACCGCCCGC
ACGCTCATTTCATGGG
Found at i:35946341 original size:159 final size:159
Alignment explanation
Indices: 35945956--35946459 Score: 502
Period size: 158 Copynumber: 3.2 Consensus size: 159
35945946 CCCAGTCTAA
* * * * *
35945956 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGAACCGAGGGTTGCGACAACAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCAAGGGTTGCGGCAGCAGGATCGAC
* * *
35946020 AGTACGTAG-GGGGGAC-CGCGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCCGCCGGCTGAGC
65 AGCACGTAGAGGGGGACTAG-GCTGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGC
* * *
35946083 GCCTGTACGCCCGTTTCGTGGGTTGGCTTAG
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** ** * ** * *
35946114 GCATATGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCAAGGGTTGTGGCAGTGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGACCAAGGGTTGCGGCAGCAGGATCGA
* * * * * * *
35946177 TAGCACGTAGAGGGGGACTAGGCTGATCCCCGACTTGCACATTATGCCTCTTCGGCCGGCTCAGC
64 CAGCACGTAGAGGGGGACTAGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGC
* * * * *
35946242 GCCCGCACGCTCATTTCATGGGTTGACATAT
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
35946273 GCATACGGAGTTCACTT-CCAGTCTAAGATCAGACTGGACCAAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCA-TTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCGGCAGCAGGATCGAC
** * * * * *
35946337 AGCACACAGA-GGGGA-TCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGTCGACTGAGC
65 AGCACGTAGAGGGGGACT-AGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGC
* *
35946400 GCCCGCTCACTCGTTTCGTGGGTTGGCTTAG
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
35946431 GCCTACGGAGTTCATTCCCAGTCTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
35946460 TTTGAGCCAC
Statistics
Matches: 272, Mismatches: 65, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
157 6 0.02
158 140 0.51
159 120 0.44
160 6 0.02
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCGGCAGCAGGATCGACA
GCACGTAGAGGGGGACTAGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:35947853 original size:26 final size:26
Alignment explanation
Indices: 35947823--35947875 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35947813 GTTGATTTAG
*
35947823 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
35947849 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
35947875 G
1 G
35947876 ATCAGCTCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:35948347 original size:157 final size:158
Alignment explanation
Indices: 35947849--35948348 Score: 397
Period size: 157 Copynumber: 3.2 Consensus size: 158
35947839 CCCAGTCTAA
* * * * ** * * *
35947849 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGCTCAGATCGAGGGTTGCGGCAGTAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAACACCAGC-CAGATGGAGGGTTGTAGCAGCAGGACCGAC
** * * * * * * * *
35947913 AGCACATAG-GGGGGACCAAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTTAGCG
64 AGCACGCAGAGGGGGATCGAGCTAATCCTCAGCTTGCGCATTCTGCCTCTCCGACCGGCTCAGCA
* * *
35947977 CCCGAACACCCATTTCGTGGGTTGGCTTAG
129 TCCGAACGCTCATTTCGTGGGTTGGCTTAG
* * * * *
35948007 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATGGAGGGTTGTGGCAGCGGGACCGGCA
1 GCATACGGAGTTCATTCCATGTCTAA-CACCAGCCAGATGGAGGGTTGTAGCAGCAGGACCGACA
* * * * * * *
35948072 GCACGCAGAGTGGGATCGAGCTAATCCTCGGCTTGCGCATTATGCCTCTTCGGCCAGCTCAG-TT
65 GCACGCAGAGGGGGATCGAGCTAATCCTCAGCTTGCGCATTCTGCCTCTCCGACCGGCTCAGCAT
* * * * * *
35948136 CCCAAACGCTCGTTTCATGGGATGACTTAT
130 -CCGAACGCTCATTTCGTGGGTTGGCTTAG
* * * **
35948166 GCATACGGAGTTCATTCCCA-GTCTAA-ATCAGACCAGACT-GAGGGTTGTAGTAGTAGGATTGA
1 GCATACGGAGTTCATT-CCATGTCTAACACCAG-CCAGA-TGGAGGGTTGTAGCAGCAGGACCGA
* * * *
35948228 CATCACGCA-AGGGGGATC-AGGTCAATCC-CTAGCTTGTGCATTCTGCCTCTCCGACCGGCTGA
63 CAGCACGCAGAGGGGGATCGAGCT-AATCCTC-AGCTTGCGCATTCTGCCTCTCCGACCGGCTCA
*
35948290 GCATCCGTACGCTCATTTCGTGGGTTGGCTTAG
126 GCATCCGAACGCTCATTTCGTGGGTTGGCTTAG
*
35948323 GCATACGGAGTTCATTCAATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
35948349 GCATATGGAG
Statistics
Matches: 269, Mismatches: 62, Indels: 23
0.76 0.18 0.06
Matches are distributed among these distances:
156 6 0.02
157 89 0.33
158 82 0.30
159 89 0.33
160 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAACACCAGCCAGATGGAGGGTTGTAGCAGCAGGACCGACAG
CACGCAGAGGGGGATCGAGCTAATCCTCAGCTTGCGCATTCTGCCTCTCCGACCGGCTCAGCATC
CGAACGCTCATTTCGTGGGTTGGCTTAG
Found at i:35949073 original size:26 final size:26
Alignment explanation
Indices: 35949043--35949095 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35949033 GTTGACTTAG
*
35949043 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
*
35949069 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
35949095 G
1 G
35949096 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:35949360 original size:159 final size:159
Alignment explanation
Indices: 35949103--35949453 Score: 425
Period size: 159 Copynumber: 2.2 Consensus size: 159
35949093 AAGATTGGAT
* * * * * * * * * *
35949103 CAGACTGAGGGTTGTGACAGCAGGATCGGTAGCACGTAG-GGGGGACCGGGTCGATCCTCGGCTT
1 CAGACCGAGGGTTGTGGCAGCAGGACCAGCAGCACGCAGAGGGGGATCAGGCCAATCCTCGGCTT
* ** * * **
35949167 GCGTATTCTACCTCTCTGATCGACTGAGTGCCCACACGCTCGTTTCATATGTTCGCTTAGGCATA
66 GCGTATTCTACCTCTCCGATCGACTGAGCACCCACACACTCGTTTCATAGGTTAACTTAGGCATA
* * *
35949232 TGGAGTTCATTCTATGTCTAAGCCCCAGC
131 CGGAGTTCATTCCATATCTAAGCCCCAGC
* ** *
35949261 CAGATCGAGGGTTGTGGCAGTGGGACCGGCAGCACGCAGAGGGGGATCAGGCCAATCCTCGGCTT
1 CAGACCGAGGGTTGTGGCAGCAGGACCAGCAGCACGCAGAGGGGGATCAGGCCAATCCTCGGCTT
* * * * *
35949326 GCGTATTCTGCCTCTCCGATCGGCTGAGCACCCACACATTCGTTTTATGGGTTAACTTAGGCATA
66 GCGTATTCTACCTCTCCGATCGACTGAGCACCCACACACTCGTTTCATAGGTTAACTTAGGCATA
*
35949391 CGGAGTTCATTCCATATCTAAGCCCCAGT
131 CGGAGTTCATTCCATATCTAAGCCCCAGC
35949420 CAGACCGAGGGTTGTGGCAGCAGGACCAGCAGCA
1 CAGACCGAGGGTTGTGGCAGCAGGACCAGCAGCA
35949454 GGATTGACAG
Statistics
Matches: 160, Mismatches: 32, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
158 31 0.19
159 129 0.81
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
CAGACCGAGGGTTGTGGCAGCAGGACCAGCAGCACGCAGAGGGGGATCAGGCCAATCCTCGGCTT
GCGTATTCTACCTCTCCGATCGACTGAGCACCCACACACTCGTTTCATAGGTTAACTTAGGCATA
CGGAGTTCATTCCATATCTAAGCCCCAGC
Found at i:35949595 original size:26 final size:26
Alignment explanation
Indices: 35949559--35949611 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35949549 GTTGACTTAG
*
35949559 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATAAGAAGTTCATCCCCAGTCTAA
*
35949585 GCATAAGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATCCCCAGTCTAA
35949611 G
1 G
35949612 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATAAGAAGTTCATCCCCAGTCTAA
Found at i:35949886 original size:159 final size:157
Alignment explanation
Indices: 35949660--35950087 Score: 441
Period size: 159 Copynumber: 2.7 Consensus size: 157
35949650 GTACGCAGGA
* * * * * *
35949660 GGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGTACGCCCG
1 GGGATCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCTGCACGCTCG
35949725 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAACCGGACTGAGGGTT
66 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAA-CGGACTGAGGGTT
*
35949790 GTGGCAGC-GTGACTGGCAGCACACAGAAG
130 GTGGCAGCAG-GACTGACAGCACACAG-AG
* * * * * * *
35949819 GGGATCGGGCTGATCCCTAGCTTGCGCATTATGCTTCTTCGGCCGACTCAGTGCCTGCACGCTCG
1 GGGATCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCTGCACGCTCG
* * * ***** *
35949884 TTTCATGGGTTGACTTATGCAT-GCGGAGTTCATTCCTAGTCTAATATTGGAATGGACTGAGGGT
66 TTTCATGGGTTGGCTTAGGCATAG-GGAGTTCATTCCTTGTCTAA-GCCCCAACGGACTGAGGGT
* * ** *
35949948 TGTGGTAGCAGGATTGACAGCATGCAGGG
129 TGTGGCAGCAGGACTGACAGCACACAGAG
* * * * *
35949977 GGGACCGGGTTGAT-CCTCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCG-CTCGCATGCT
1 GGGATCGGGCTGATCCCT-GGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCT-GCACGCT
* * *
35950040 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
64 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGC
35950088 ATACGGAGTT
Statistics
Matches: 215, Mismatches: 48, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
157 5 0.02
158 85 0.40
159 122 0.57
160 3 0.01
ACGTcount: A:0.16, C:0.26, G:0.31, T:0.26
Consensus pattern (157 bp):
GGGATCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCTGCACGCTCG
TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAACGGACTGAGGGTTG
TGGCAGCAGGACTGACAGCACACAGAG
Found at i:35950069 original size:158 final size:155
Alignment explanation
Indices: 35949593--35950085 Score: 470
Period size: 158 Copynumber: 3.1 Consensus size: 155
35949583 AAGCATAAGA
* * * * * * *
35949593 AGTTCATTCCCAGTCTAAGATTGGACTGGA-TCAAGGGTTGCGGCAACAGGATCGGCAGTACGCA
1 AGTTCATTCCTAGTCTAA-ATTGGAATGGACT-GAGGGTTGTGGCAGCAGGATTGGCAGCACGCA
* * * *
35949657 GGAGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGTACGC
64 GGGGGGATCGGGCTGAT-CCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCG-CCGCACGC
* *
35949722 CCGTTTCATGGGTTGGCTTAGGCATAGGG
127 TCGTTTCATGGGTTGGCTTAGGCATACGG
* ***** * * *
35949751 AGTTCATTCCTTGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGC-GTGACTGGCAGCACACA
1 AGTTCATTCCTAGTCTAAATTGGAA-TGGACTGAGGGTTGTGGCAGCAG-GATTGGCAGCACGCA
* * * * * * * *
35949815 GAAGGGGATCGGGCTGATCCCTAGCTTGCGCATTATGCTTCTTCGGCCGACTCAGTGCCTGCACG
64 G-GGGGGATCGGGCTGATCCC-GGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCC-GCACG
* * *
35949880 CTCGTTTCATGGGTTGACTTATGCATGCGG
126 CTCGTTTCATGGGTTGGCTTAGGCATACGG
* * *
35949910 AGTTCATTCCTAGTCTAATATTGGAATGGACTGAGGGTTGTGGTAGCAGGATTGACAGCATGCAG
1 AGTTCATTCCTAGTCTAA-ATTGGAATGGACTGAGGGTTGTGGCAGCAGGATTGGCAGCACGCAG
* * * * *
35949975 GGGGGACCGGGTTGATCCTCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCTCGCATGCT
65 GGGGGATCGGGCTGATCC-CGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGC-CGCACGCT
*
35950040 CGTTTCGTGGGTTGGCTTAGGCATACGG
128 CGTTTCATGGGTTGGCTTAGGCATACGG
35950068 AGTTCATTCC-ATGTCTAA
1 AGTTCATTCCTA-GTCTAA
35950086 GCATACGGAG
Statistics
Matches: 262, Mismatches: 62, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 136 0.52
159 120 0.46
160 3 0.01
ACGTcount: A:0.18, C:0.25, G:0.31, T:0.26
Consensus pattern (155 bp):
AGTTCATTCCTAGTCTAAATTGGAATGGACTGAGGGTTGTGGCAGCAGGATTGGCAGCACGCAGG
GGGGATCGGGCTGATCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCGCACGCTCGT
TTCATGGGTTGGCTTAGGCATACGG
Found at i:35950089 original size:26 final size:26
Alignment explanation
Indices: 35950060--35950112 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35950050 GTTGGCTTAG
35950060 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
35950086 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35950112 G
1 G
35950113 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35951291 original size:26 final size:26
Alignment explanation
Indices: 35951261--35951313 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35951251 GTTGGCTTAG
*
35951261 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
35951287 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
35951313 G
1 G
35951314 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:35952470 original size:26 final size:26
Alignment explanation
Indices: 35952441--35952490 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
35952431 AACTCTTTCT
* *
35952441 AAAAAAATTTTAAAAAATCCTGAACC
1 AAAAAAAGTTTAAAAAATCATGAACC
*
35952467 AAAAAAAGTTTCAAAAATCATGAA
1 AAAAAAAGTTTAAAAAATCATGAA
35952491 AAATAGAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.60, C:0.12, G:0.06, T:0.22
Consensus pattern (26 bp):
AAAAAAAGTTTAAAAAATCATGAACC
Found at i:35952752 original size:26 final size:26
Alignment explanation
Indices: 35952700--35952752 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35952690 GTTGACTTAG
* *
35952700 GCATACGAAGTTCATCCCCAGTTTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
35952726 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
35952752 G
1 G
35952753 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:35954660 original size:26 final size:26
Alignment explanation
Indices: 35954630--35954682 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35954620 GTTGACTTAG
*
35954630 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGCTCATCCCCAGTCTAA
*
35954656 GCATACGAAGCTCATTCCCAGTCTAA
1 GCATACGAAGCTCATCCCCAGTCTAA
35954682 G
1 G
35954683 ATCGAATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACGAAGCTCATCCCCAGTCTAA
Found at i:35954987 original size:159 final size:159
Alignment explanation
Indices: 35954794--35955159 Score: 405
Period size: 159 Copynumber: 2.3 Consensus size: 159
35954784 CCCGTATGCC
* *
35954794 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAA-GG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCAATGG
* * * *
35954858 ATTGT-GGCAGCGGGACCGGCAGCACGCAAAGGGGGACCGGGTCGATCCCCGACTTACGCATTAT
66 -TTGTAGG-AGCAGGACCGACAGCACGCAAAGGGGGACCGGGCCGATCCCCGACTTACACATTAT
* *
35954922 GCCTCTTCGACCGGCTCAGCACCTGCACGCT
129 GCCTCTCCGACCGGCTCAGCACCCGCACGCT
* * * * **** *
35954953 CGTTTCATGGGTTGACTTATGCATACGAACTTCATTCCCA-GTCTAAGATTGAATCGGATCAATG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAATCGGACCAATG
* ** * *
35955017 GTTGTAGGAGCAGGATCGACAGCACGCAGGGGGGGACCGGGCCGATCCCCGACTTGCACATTTTG
65 GTTGTAGGAGCAGGACCGACAGCACGCAAAGGGGGACCGGGCCGATCCCCGACTTACACATTATG
* * * * ** *
35955082 CCTCTCCGGCTGGTTGAGTGCCCGCACTCT
130 CCTCTCCGACCGGCTCAGCACCCGCACGCT
* *
35955112 CGTTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
35955160 TTACAGAGTT
Statistics
Matches: 167, Mismatches: 36, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
158 3 0.02
159 157 0.94
160 7 0.04
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (159 bp):
CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCAATGG
TTGTAGGAGCAGGACCGACAGCACGCAAAGGGGGACCGGGCCGATCCCCGACTTACACATTATGC
CTCTCCGACCGGCTCAGCACCCGCACGCT
Found at i:35956175 original size:159 final size:159
Alignment explanation
Indices: 35955953--35956249 Score: 425
Period size: 159 Copynumber: 1.9 Consensus size: 159
35955943 GCATGTAGGT
* * * *
35955953 CGGGTCGATCCTCGGCTTACGCATTCTACCTCTCCGGCCGACTGAGCGCCCGTACGTCTGTTTTG
1 CGGGTCGATCCCCGGCTTACGCATTCTACCGCTCCGACCGACTGAGCGCCCGCACGTCTGTTTTG
* * * *
35956018 TGGGTTGGCTTAGGCATAGGGAATTCATTCCATGTGTAACCCCCAGCCGGACCGAGGGTTGTGGT
66 TGGGTTGGCTTAGGCATACGGAATTCATTCCATGTCTAACCCCCAGCCGGACCGAGAGTTGTGGC
*
35956083 AGCGGGACTGACAGCACGTAAAGGGAGAC
131 AGCAGGACTGACAGCACGTAAAGGGAGAC
* * * * **
35956112 CGGGTTGATCCCCGGCTTGCGCATTCTACCGCTTCGACTGGTTGAGCGCCCGCACG-CTCGTTTT
1 CGGGTCGATCCCCGGCTTACGCATTCTACCGCTCCGACCGACTGAGCGCCCGCACGTCT-GTTTT
* *
35956176 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGAGTTGTGG
65 GTGGGTTGGCTTAGGCATACGGAATTCATTCCATGTCTAACCCCCAGCCGGACCGAGAGTTGTGG
35956241 CAGCAGGAC
130 CAGCAGGAC
35956250 CGGCAGTGGG
Statistics
Matches: 120, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
158 2 0.02
159 118 0.98
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (159 bp):
CGGGTCGATCCCCGGCTTACGCATTCTACCGCTCCGACCGACTGAGCGCCCGCACGTCTGTTTTG
TGGGTTGGCTTAGGCATACGGAATTCATTCCATGTCTAACCCCCAGCCGGACCGAGAGTTGTGGC
AGCAGGACTGACAGCACGTAAAGGGAGAC
Found at i:35956404 original size:26 final size:26
Alignment explanation
Indices: 35956374--35956426 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35956364 GTTGACTTAG
35956374 GCATACGGAGTTCATCCCCACTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
* *
35956400 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
35956426 G
1 G
35956427 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCACTCTAA
Found at i:35956763 original size:159 final size:157
Alignment explanation
Indices: 35956400--35956763 Score: 363
Period size: 159 Copynumber: 2.3 Consensus size: 157
35956390 CCCACTCTAA
* * * * *
35956400 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCAGGATCGGTA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGAATCGGACCGAGGGTTGAGACAGCAGGACCGGCA
** * * * *
35956465 GCACGTAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGATCAGCTGAGCACC
65 GCACACAGGGGGGATCGGGCCGATCCCTGACTTGCGCATTATACCTCTCCGATCAGCTCAACACC
* **
35956530 TGCACGCCCGTTTCACGGGTTGGCTTAG
130 CGCACGCCCGTTTCACGGGTTAACTTAG
* ** * * *
35956558 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCAAGGGTTGTAG-CAGCGGGACCGGC
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGAATCGGACCGAGGGTTG-AGACAGCAGGACCGGC
* * * * **
35956622 AGCACACAGATGGGGATCGGGCCGAT-CCTCGACTTGTGCATTATGCCTCTTCGATTGGCTCAAC
64 AGCACACAG-GGGGGATCGGGCCGATCCCT-GACTTGCGCATTATACCTCTCCGATCAGCTCAAC
* * * *
35956686 GCCCGCACGCTCGTTTCATGGGTTAACTTAT
127 ACCCGCACGCCCGTTTCACGGGTTAACTTAG
* * *
35956717 GCATACAGAGTTCATTCCTAGTCTAAGATCGAACCGGATCGAGGGTT
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGAATCGGACCGAGGGTT
35956764 ACAGCTGCAG
Statistics
Matches: 163, Mismatches: 38, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
157 3 0.02
158 57 0.35
159 102 0.63
160 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGAATCGGACCGAGGGTTGAGACAGCAGGACCGGCAG
CACACAGGGGGGATCGGGCCGATCCCTGACTTGCGCATTATACCTCTCCGATCAGCTCAACACCC
GCACGCCCGTTTCACGGGTTAACTTAG
Found at i:35958591 original size:158 final size:157
Alignment explanation
Indices: 35958167--35958613 Score: 461
Period size: 159 Copynumber: 2.8 Consensus size: 157
35958157 TTGCCGCAGT
* * * * **
35958167 AGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCACATTCGGCCTCTCCAACCG
1 AGGATCGACAGCACGCAGGGGGGAACGGGCTGATCCCCGGCTTGCACATTCTGCCTTTCC-GGCG
* * * *
35958232 ACTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCGAAG
65 ACTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * *
35958297 CCCCGACCGGACCGAGGGTTATGACAGC
130 ACCCGACAGGACCAAGGGTTACGACAGC
* * * * * *
35958325 GGGA-CCAGCAGCACGCAGAGGGGGAATGGG-TCGATCGCCGGCTTGCGCATTATGCCTCTT-CG
1 AGGATCGA-CAGCACGCAG-GGGGGAACGGGCT-GATCCCCGGCTTGCACATTCTGCCT-TTCCG
* * * *
35958387 GCTAGCTCAGCGCCCGCAAGCTCATTTCGTGGGTTGGCTTATGCATACGGAGTTCATTCCCA-GT
62 GCGA-CTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGT
* * * * *
35958451 CTAAGATCGGACAGGATCAAGGGTTGCGATAGC
125 CTAAGACCCGACAGGACCAAGGGTTACGACAGC
* ** * *
35958484 AGGATCGATAGCACATAGGGGGGAACGGGCTGATCCCCGGTTTACACATTCTGCCTTTCCGGTCG
1 AGGATCGACAGCACGCAGGGGGGAACGGGCTGATCCCCGGCTTGCACATTCTGCCTTTCCGG-CG
* * *
35958549 ACTGAGTGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
65 ACTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
35958614 CATATGAAGT
Statistics
Matches: 231, Mismatches: 47, Indels: 22
0.77 0.16 0.07
Matches are distributed among these distances:
157 7 0.03
158 102 0.44
159 116 0.50
160 6 0.03
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (157 bp):
AGGATCGACAGCACGCAGGGGGGAACGGGCTGATCCCCGGCTTGCACATTCTGCCTTTCCGGCGA
CTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGA
CCCGACAGGACCAAGGGTTACGACAGC
Done.