Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 398 of 402
Found at i:35958819 original size:26 final size:26
Alignment explanation
Indices: 35958783--35958835 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35958773 GTTGACTTAG
35958783 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
35958809 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35958835 G
1 G
35958836 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35958823 original size:196 final size:196
Alignment explanation
Indices: 35958481--35958837 Score: 484
Period size: 196 Copynumber: 1.8 Consensus size: 196
35958471 GGGTTGCGAT
* * * * * * * *
35958481 AGCAGGATCGATAGCACATAGGGGGGAACGGGCTGATCCCCGGTTTACACATTCTGCCTTTCCGG
1 AGCAGGATCAACAGCACATAGGGGGGAACAGGCCGATCCCCAGCTTACACATACTGCCTCTCCGG
* * ** * * *
35958546 TCGACTGAGTGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
66 TCGACTGAGCGCCCGCACGCTCGTTTAATCGGTTGACTTAGGCATACGGAGTTCATCCCATGTCT
*
35958611 AAGCATATGAAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGATGATAGGACCAG
131 AAGCATACGAAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGATGATAGGACCAG
35958676 C
196 C
* ** *
35958677 AGCAGGATCAACAGCACATAGGGGGGATCAGGCCGATCCCCAGCTTATGCATACTGCCTCTCTGG
1 AGCAGGATCAACAGCACATAGGGGGGAACAGGCCGATCCCCAGCTTACACATACTGCCTCTCCGG
*
35958742 TC-AGCTGAGCGCCCGCACGCTTGTTTAATCGGTTGACTTAGGCATACGGAGTTCATCCC-TAGT
66 TCGA-CTGAGCGCCCGCACGCTCGTTTAATCGGTTGACTTAGGCATACGGAGTTCATCCCAT-GT
*
35958805 CTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
129 CTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
35958838 CAGATCGGAT
Statistics
Matches: 137, Mismatches: 22, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
195 2 0.01
196 135 0.99
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (196 bp):
AGCAGGATCAACAGCACATAGGGGGGAACAGGCCGATCCCCAGCTTACACATACTGCCTCTCCGG
TCGACTGAGCGCCCGCACGCTCGTTTAATCGGTTGACTTAGGCATACGGAGTTCATCCCATGTCT
AAGCATACGAAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGATGATAGGACCAG
C
Found at i:35959321 original size:26 final size:26
Alignment explanation
Indices: 35959291--35959340 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
35959281 GGCTTAGGCA
*
35959291 TACGGAGTTCATT-CCATGTCTAAGCG
1 TACGGAGCTCATTCCCA-GTCTAAGCG
35959317 TACGGAGCTCATTCCCAGTCTAAG
1 TACGGAGCTCATTCCCAGTCTAAG
35959341 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGCTCATTCCCAGTCTAAGCG
Found at i:35960052 original size:26 final size:26
Alignment explanation
Indices: 35960022--35960072 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
35960012 GTTGACTTAG
35960022 GCATACGGAGTTCATCCCCAGTCTAT
1 GCATACGGAGTTCATCCCCAGTCTAT
* *
35960048 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
35960073 AGATCAGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAT
Found at i:35960575 original size:26 final size:26
Alignment explanation
Indices: 35960524--35960576 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35960514 GTTGGCTTAG
*
35960524 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
35960550 GCATACGGAGTTCATTCC-TAGCCTAA
1 GCATACGGAGTTCATTCCAT-GCCTAA
35960576 G
1 G
35960577 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:35960933 original size:26 final size:26
Alignment explanation
Indices: 35960893--35960945 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35960883 GTTGACTTAG
*
35960893 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGGTCATCCCCAGTCTAA
* *
35960919 GCATGCGGAGGTCATTCCCAGTCTAA
1 GCATACGGAGGTCATCCCCAGTCTAA
35960945 G
1 G
35960946 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.23
Consensus pattern (26 bp):
GCATACGGAGGTCATCCCCAGTCTAA
Found at i:35961270 original size:26 final size:26
Alignment explanation
Indices: 35961234--35961286 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35961224 GTTGACTTAG
*
35961234 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
35961260 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35961286 G
1 G
35961287 ATCGAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35961558 original size:11 final size:11
Alignment explanation
Indices: 35961542--35961593 Score: 86
Period size: 11 Copynumber: 4.7 Consensus size: 11
35961532 GGGGCACCAT
35961542 CGTCGGAGCAC
1 CGTCGGAGCAC
*
35961553 CGTCGGAGCAT
1 CGTCGGAGCAC
35961564 CGTCGGAGCAC
1 CGTCGGAGCAC
*
35961575 CGTCGGAGCAT
1 CGTCGGAGCAC
35961586 CGTCGGAG
1 CGTCGGAG
35961594 AGCCTAACCG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 38 1.00
ACGTcount: A:0.17, C:0.31, G:0.38, T:0.13
Consensus pattern (11 bp):
CGTCGGAGCAC
Found at i:35961567 original size:22 final size:22
Alignment explanation
Indices: 35961539--35961593 Score: 110
Period size: 22 Copynumber: 2.5 Consensus size: 22
35961529 CCCGGGGCAC
35961539 CATCGTCGGAGCACCGTCGGAG
1 CATCGTCGGAGCACCGTCGGAG
35961561 CATCGTCGGAGCACCGTCGGAG
1 CATCGTCGGAGCACCGTCGGAG
35961583 CATCGTCGGAG
1 CATCGTCGGAG
35961594 AGCCTAACCG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.18, C:0.31, G:0.36, T:0.15
Consensus pattern (22 bp):
CATCGTCGGAGCACCGTCGGAG
Found at i:35962377 original size:26 final size:26
Alignment explanation
Indices: 35962328--35962380 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35962318 GTTGGCTTAG
* *
35962328 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
35962354 GCATACGAAGTTCATTCCCA-GTCTAA
1 GCATACGAAGTTCATT-CCATGTCTAA
35962380 G
1 G
35962381 ATCAAAATGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:35962740 original size:26 final size:26
Alignment explanation
Indices: 35962709--35962761 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35962699 GTTGACTTAG
*
35962709 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
35962735 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
35962761 G
1 G
35962762 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:35963046 original size:355 final size:356
Alignment explanation
Indices: 35962430--35963328 Score: 941
Period size: 355 Copynumber: 2.5 Consensus size: 356
35962420 CAGAATCGGT
* * * * * * **
35962430 AGCACGTAGGGGGGAACCAGGCCGATCCCT-GACTTGCGCATTCTACCTCTTCAGCCGAATAAGG
1 AGCACGTAGGGGGG-ACCAGGTC-AACCCTCGACTTACGCATTCTGCCTCTCCAGTCGGTTAA-G
* * * * *
35962494 GA-CCACACGCTCGTTTCGTGGGTTGGCTTAGCCAT-GCAGAGTTCATTCCATGTCTAAGCCCCA
63 CACCCACACGCCCGTTTCGTGGGTTAGCTTAGGCATAG-GGAGTTCATTCCATGTCTAAGCCCCA
** * * * * *
35962557 GCTGGACCGAGGGTTGTGGTAGCAGGACTGACAGTGAGATCGGCAGCACGCAAAAGGTGA-TCGG
127 GCCAGACCGAGGGTTCTGATAG--GGA--GAC--------CGGCAGCACGCAGAGGGGGACT-GG
* * * * * *
35962621 GCTTATCCCCGGCTTACGCATTATGCCTCTCCGTTCGACCTCTTTGGTCGGCTTAGCACCCATAC
179 GCTGATCCCCGGCTTACGCATTATGCCTCTCCGGTCGACCTCTCTAGTCAGCTGAGCACCCATAC
* * * *
35962686 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATT
244 GCTCATTTCATGGGTTGACTTAGGCAAACGGAGTTAATCCCCAGTCCAAGCATACGAAGTTCATT
*
35962751 CCCAGTCTAAGATTAGACCAGACTAAGGGTTGCGACAGCAAGATCGAC
309 CCCAGTCTAAGATTAGACCAGACTAAGGGTAGCGACAGCAAGATCGAC
*
35962799 AGCACGTAGGGGGGACCAGGTCAACCCT-GACTTACGCATTCTGCCTCT-CTGATCGGCTT-AGC
1 AGCACGTAGGGGGGACCAGGTCAACCCTCGACTTACGCATTCTGCCTCTCCAG-TCGG-TTAAGC
* ** * **
35962861 GCCCACACGCTTGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCGCTTGC
64 ACCCACACGCCCGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* * *
35962926 CAGACTGAGGGTTCTGATAGTGG-GACTGGCAGCACGCAGAGGGGGACTGGGCTGATCCCTGGCT
129 CAGACCGAGGGTTCTGATAG-GGAGACCGGCAGCACGCAGAGGGGGACTGGGCTGATCCCCGGCT
* * *
35962990 TGCGCATTATGCCTCTCCGGTCGGCCTCTCTAGTCAGCTGAGCGCCCATACGCTCATTTCATGGG
193 TACGCATTATGCCTCTCCGGTCGACCTCTCTAGTCAGCTGAGCACCCATACGCTCATTTCATGGG
* * *
35963055 TTGACTTAGGCAAATGGAGTTAATCCCCAGTCCAAGCATATGGAGTTCATTCCCAGTCTAAGATT
258 TTGACTTAGGCAAACGGAGTTAATCCCCAGTCCAAGCATACGAAGTTCATTCCCAGTCTAAGATT
* * * * ** * *
35963120 GGACCTGACTGAGGGTAGTGGTAGCAGGATCGAT
323 AGACCAGACTAAGGGTAGCGACAGCAAGATCGAC
* * * * * *
35963154 AGCACGTAGGGGTGATCGGGTCGATCCTCGACTTACGCATTCTGCCTCTCCAGTCGGTTAAGCAT
1 AGCACGTAGGGGGGACCAGGTCAACCCTCGACTTACGCATTCTGCCTCTCCAGTCGGTTAAGCAC
** * *
35963219 CCGTATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
66 CCACACGCCCGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * *
35963284 GACCGAGGGTTGTGGTAGGGAGACCGGTAGCACGTAGAGGGGGAC
131 GACCGAGGGTTCTGATAGGGAGACCGGCAGCACGCAGAGGGGGAC
35963329 CAGGTCGATC
Statistics
Matches: 445, Mismatches: 76, Indels: 31
0.81 0.14 0.06
Matches are distributed among these distances:
355 197 0.44
356 120 0.27
357 2 0.00
363 3 0.01
366 5 0.01
367 95 0.21
368 9 0.02
369 14 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (356 bp):
AGCACGTAGGGGGGACCAGGTCAACCCTCGACTTACGCATTCTGCCTCTCCAGTCGGTTAAGCAC
CCACACGCCCGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
GACCGAGGGTTCTGATAGGGAGACCGGCAGCACGCAGAGGGGGACTGGGCTGATCCCCGGCTTAC
GCATTATGCCTCTCCGGTCGACCTCTCTAGTCAGCTGAGCACCCATACGCTCATTTCATGGGTTG
ACTTAGGCAAACGGAGTTAATCCCCAGTCCAAGCATACGAAGTTCATTCCCAGTCTAAGATTAGA
CCAGACTAAGGGTAGCGACAGCAAGATCGAC
Found at i:35963403 original size:32 final size:32
Alignment explanation
Indices: 35963319--35963392 Score: 139
Period size: 32 Copynumber: 2.3 Consensus size: 32
35963309 GGTAGCACGT
*
35963319 AGAGGGGGACCAGGTCGATCCTTGGTAAACGC
1 AGAGGGGGACCAGGTCGATCCTCGGTAAACGC
35963351 AGAGGGGGACCAGGTCGATCCTCGGTAAACGC
1 AGAGGGGGACCAGGTCGATCCTCGGTAAACGC
35963383 AGAGGGGGAC
1 AGAGGGGGAC
35963393 TAGGCTGATC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.26, C:0.22, G:0.41, T:0.12
Consensus pattern (32 bp):
AGAGGGGGACCAGGTCGATCCTCGGTAAACGC
Found at i:35964541 original size:26 final size:26
Alignment explanation
Indices: 35964505--35964556 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
35964495 TGGCTTAGGC
*
35964505 ATACGAAGTTCATTCCTTGTCTAAGA
1 ATACGAAGTTCATTCCTAGTCTAAGA
*
35964531 ATACGGAGTTCATTCCTAGTCTAAGA
1 ATACGAAGTTCATTCCTAGTCTAAGA
35964557 TTGGACCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (26 bp):
ATACGAAGTTCATTCCTAGTCTAAGA
Found at i:35964934 original size:26 final size:26
Alignment explanation
Indices: 35964904--35964956 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35964894 GTTGACTTAG
35964904 GCATACAAAGTTCA-TCCCTAGTCTAA
1 GCATACAAAGTTCATTCCC-AGTCTAA
**
35964930 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
35964956 G
1 G
35964957 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:35965152 original size:26 final size:26
Alignment explanation
Indices: 35965101--35965153 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35965091 CCGATTCGAT
* *
35965101 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
35965127 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
35965153 C
1 C
35965154 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35965327 original size:26 final size:26
Alignment explanation
Indices: 35965298--35965350 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35965288 CCGATCTGAT
35965298 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
35965324 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
35965350 C
1 C
35965351 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:35971487 original size:26 final size:26
Alignment explanation
Indices: 35971443--35971492 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
35971433 CCAGTCCAAT
* *
35971443 CTTAGACTGGGAATGAACTTCGTACG
1 CTTAGACTGGGAATAAACTCCGTACG
35971469 CTTAGACTGAGG-ATAAACTCCGTA
1 CTTAGACTG-GGAATAAACTCCGTA
35971493 TGTCTAAGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 19 0.90
27 2 0.10
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTACG
Found at i:35972503 original size:159 final size:158
Alignment explanation
Indices: 35972152--35972508 Score: 378
Period size: 158 Copynumber: 2.3 Consensus size: 158
35972142 AAAATCTTAG
* * * * * *
35972152 ACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGCATGCGGGTGCTCAGTCGGTC
1 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGCTAAGCCGGTC
** * * * *
35972217 GGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCTCTGCATGCTGTCGATCCTACTAC
66 AAAGAGGCAGAATGCACAAGCTGGGGATCAACCCGATCCCCTCTACATGCTGTCGATCCCACTAC
* * * * *
35972282 CTCAACCTTCAGTCCGGTTCGATCTTAC
131 CACAACCCTCAGTCCGGCTCGAGCATAC
* * *
35972310 ACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGTGCTAAGCCGG-C
1 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGCTAAGCCGGTC
* * * * *
35972374 TAAAGAGGCATAATGCACAAGTTGGGGATCAACCCGATCCCCCTCTACGTGCTGTCGGTCCCGCT
66 -AAAGAGGCAGAATGCACAAGCTGGGGATCAACCCGAT-CCCCTCTACATGCTGTCGATCCCACT
* * * * *
35972439 GCCACAACCCTC-GATCTGGCTGGGGCATAG
129 ACCACAACCCTCAG-TCCGGCTCGAGCATAC
*
35972469 ACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
1 AC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
35972509 TGGGCATGCG
Statistics
Matches: 162, Mismatches: 33, Indels: 7
0.80 0.16 0.03
Matches are distributed among these distances:
157 1 0.01
158 86 0.53
159 74 0.46
160 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (158 bp):
ACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGCTAAGCCGGTC
AAAGAGGCAGAATGCACAAGCTGGGGATCAACCCGATCCCCTCTACATGCTGTCGATCCCACTAC
CACAACCCTCAGTCCGGCTCGAGCATAC
Found at i:35972540 original size:159 final size:158
Alignment explanation
Indices: 35972152--35972584 Score: 404
Period size: 159 Copynumber: 2.7 Consensus size: 158
35972142 AAAATCTTAG
* * ** *
35972152 ACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGCATGCGGGTGCTCAGTCGGTC
1 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGTGCTCAACCGGCC
* * * *
35972217 GGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCTCTGCATGCTGTCGATCCTACTAC
66 GGAGAGGCAGAATGCACAAGCTGGGGATCAACCCGATCCCCTCTACATGCTGTCGATCCCACTAC
* * * * *
35972282 CTCAACCTTCAGTCCGGTTCGATCTTAC
131 CACAACCCTCAGTCCGGCTCGAGCATAC
* * * * *
35972310 ACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGTGCT-AAGCCGGC
1 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGTGCTCAA-CCGGC
*** * * * * *
35972374 TAAAGAGGCATAATGCACAAGTTGGGGATCAACCCGATCCCCCTCTACGTGCTGTCGGTCCCGCT
65 CGGAGAGGCAGAATGCACAAGCTGGGGATCAACCCGAT-CCCCTCTACATGCTGTCGATCCCACT
* * * * *
35972439 GCCACAACCCTC-GATCTGGCTGGGGCATAG
129 ACCACAACCCTCAG-TCCGGCTCGAGCATAC
* * * *
35972469 ACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGCGCTCAACCAGC
1 AC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGTGCTCAACCGGC
* * * * * * * * *
35972533 CGGAGAGGTAGAATACGCAATCCGGGGATCAGCCCGGTCCCCTTTACGTGCT
65 CGGAGAGGCAGAATGCACAAGCTGGGGATCAACCCGATCCCCTCTACATGCT
35972585 ACCGATCCTG
Statistics
Matches: 216, Mismatches: 54, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
157 1 0.00
158 97 0.45
159 115 0.53
160 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
ACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGTGCTCAACCGGCC
GGAGAGGCAGAATGCACAAGCTGGGGATCAACCCGATCCCCTCTACATGCTGTCGATCCCACTAC
CACAACCCTCAGTCCGGCTCGAGCATAC
Found at i:35973995 original size:196 final size:196
Alignment explanation
Indices: 35973634--35974100 Score: 517
Period size: 196 Copynumber: 2.4 Consensus size: 196
35973624 CGATCCTATT
** * * *
35973634 CGATCTTAGACCAAGAATGAACTCCGTATGCTGAGACATGGAATGAACTCTGTATGCCTAAACCA
1 CGATCTTAGACTGAGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAACCA
** ** ** * * * *
35973699 ACCCATGAAATGAGAGTGCGGGTGCTCAGTCGACCGGAGAGGCAGAATGTATAAGTCGGGGATTG
66 ACCCATGAAAAAAGAGTGCGGGCACTCAAACGACCGGAGAGGCAGAATGCACAAGTCGAGGATCG
* * * * * ** *
35973764 GCCCGATCCCCCCTGCGTGCTACCGATCTTGTTGCTGGTCCTA-TGGCCGCAACCCTTGGTC-CG
131 ACCCGATCCCCCATGCATGCTACCGATCCTGTTGCTGGTCCTACT-GCCACAACCCTCAGTCAAG
35973827 ATC
195 -TC
* * * *
35973830 TGATCTTAGACTGAGAATGAACTCTGTATACTTAAACATGGAATGAACTCCGTATGCCTAACCCA
1 CGATCTTAGACTGAGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAACCA
* * * *
35973895 ACCCACGAAAAAAGGGTGCTGGCACTCAAACGACCGGAGAGGCAGAATGCGCAAGTCGAGGATCG
66 ACCCATGAAAAAAGAGTGCGGGCACTCAAACGACCGGAGAGGCAGAATGCACAAGTCGAGGATCG
* * * ** *
35973960 ACTCGTTCCCCCATGCATGTTGTCGATCCTGTTGCTGGTCCTACTGTCACAACCCTCAGTCAAGT
131 ACCCGATCCCCCATGCATGCTACCGATCCTGTTGCTGGTCCTACTGCCACAACCCTCAGTCAAGT
35974025 C
196 C
* * **
35974026 CGATCTTAGACTGCGAATGAACTCTGTATGCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTC
1 CGATCTTAGACTGAGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAACC
35974090 AACCCATGAAA
65 AACCCATGAAA
35974101 CTAGCGTACT
Statistics
Matches: 223, Mismatches: 45, Indels: 6
0.81 0.16 0.02
Matches are distributed among these distances:
195 1 0.00
196 220 0.99
197 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.23
Consensus pattern (196 bp):
CGATCTTAGACTGAGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAACCA
ACCCATGAAAAAAGAGTGCGGGCACTCAAACGACCGGAGAGGCAGAATGCACAAGTCGAGGATCG
ACCCGATCCCCCATGCATGCTACCGATCCTGTTGCTGGTCCTACTGCCACAACCCTCAGTCAAGT
C
Found at i:35974069 original size:26 final size:26
Alignment explanation
Indices: 35974030--35974082 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35974020 CAAGTCCGAT
*
35974030 CTTAGACTGCGAATGAACTCTGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
* *
35974056 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
35974082 C
1 C
35974083 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:35974460 original size:146 final size:146
Alignment explanation
Indices: 35974189--35974947 Score: 477
Period size: 159 Copynumber: 5.0 Consensus size: 146
35974179 TCAATCCTGT
* * *
35974189 TGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCC
* * ** * * *
35974254 ATGAAATGGACGTGCGGGTGCTCAGTCGACCGAAGAGGCAGAATGCGCAAGCCGGTGATCGGTCG
66 ACGAAACGGACGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGTGATCGGCCC
35974319 GGTCCCCCCTACATGC
131 GGTCCCCCCTACATGC
* * * *
35974335 TGCCACAACCCTCGGTCCGACTGGGGTTTAGACATGGAATGAACTCCGTATGCCAAAGCCAGCCC
1 TGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCC
* * * * * * **
35974400 ACGAAAC-GAGTGTGTGGGCACTGAGCCGGCCGAAGAGGGATAATGCGCAAGTTGAG-GATCGGC
66 ACGAAACGGA-CGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCG-GTGATCGGC
* *
35974463 CCGGTCCCCCTCTGCTTGC
129 CCGGTCCCCC-CTACATGC
* ** ** * *
35974482 TGTCGCTCCCATAGCCATGACCCTCGATTTGGTTGGGGCCTAGACATGGAATGAACTCCCTATGC
1 --T-G---CC--A--CA--ACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGC
* * * * * * *
35974547 CTAAGCCAACCCACGAAACGGACGTGCGGGCGCTCAGTCGACCGAAAAGGTAGAATACGTAAGCC
54 CAAAGCCAACCCACGAAACGGACGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAGCC
* * * *
35974612 AGG-GATCAGCCCGGTCCCCCATGCGTGC
119 -GGTGATCGGCCCGGTCCCCCCTACATGC
* * * * * * *
35974640 TGCCACAACCTTCGGTCTGGCTGGGGTTTAGACAT-GAATGAACTCCGTATGCCAAAGTCAACCC
1 TGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCC
** *** * * * * * * *
35974704 AC-AAAATGAGCGTGCGGGTGGTGAGCCGATCGGATAGGCATAATGCGTAAGCCGGGGATCGGCC
66 ACGAAACGGA-CGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGTGATCGGCC
* * *
35974768 CGATCCCTCTCTACGTGCTGTCGGTCCTAC
130 CGGTCCC-C-C--C-TAC-AT--G-----C
* * * *
35974798 TGCCACAACCCTCGATTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCC
* * * * * ** * **
35974863 ATGAAAC-GAGCGTACAGGCGCTCAACCGGTCGAAGAGGCAGAATGTGCAAGCCGAAGATCGGCC
66 ACGAAACGGA-CGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGTGATCGGCC
* *
35974927 CGGTGCCCCCTACGTGC
130 CGGTCCCCCCTACATGC
35974944 TGCC
1 TGCC
35974948 GATCCTATTA
Statistics
Matches: 477, Mismatches: 102, Indels: 68
0.74 0.16 0.11
Matches are distributed among these distances:
144 7 0.01
145 76 0.16
146 139 0.29
147 8 0.02
148 2 0.00
149 1 0.00
150 5 0.01
151 3 0.01
152 2 0.00
153 5 0.01
154 2 0.00
155 3 0.01
156 1 0.00
157 3 0.01
158 37 0.08
159 177 0.37
160 6 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (146 bp):
TGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCC
ACGAAACGGACGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGTGATCGGCCC
GGTCCCCCCTACATGC
Found at i:35974860 original size:304 final size:304
Alignment explanation
Indices: 35974189--35974947 Score: 880
Period size: 304 Copynumber: 2.5 Consensus size: 304
35974179 TCAATCCTGT
* *
35974189 TGCCACAACCCTCG-GTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 TGCCACAACCCTCGATTC-GGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * *
35974253 CATGAAATGGACGTGCGGGTGCTCAGTCGACCGAAGAGGCAGAATGCGCAAGCCGGTGATCGGTC
65 CATGAAACGGACGTGCGGGCGCTCAGTCGACCGAAAAGGCAGAATACGCAAGCCGGTGATCAGCC
* *
35974318 GGGTCCCCCCTACATGCTGCCACAACCCTCGGTCCGACTGGGGTTTAGACATGGAATGAACTCCG
130 CGGTCCCCCATACATGCTGCCACAACCCTCGGTCCGACTGGGGTTTAGACATGGAATGAACTCCG
* * * * * *
35974383 TATGCCAAAGCCAGCCCACGAAACGAGTGTGTGGGCACTGAGCCGGCCGAAGAGGGATAATGCGC
195 TATGCCAAAGCCAACCCACAAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATGCGC
** * * *
35974448 AAGTTGAGGATCGGCCCGGTCCCCCTCTGCTTGCTGTCGCTCCCA
260 AAGCCGAGGATCGGCCCGATCCCCCTCTACGTGCTGTCGCTCCCA
** * * *
35974493 TAGCCATGACCCTCGATTTGGTTGGGGCCTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 T-GCCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * *
35974558 CACGAAACGGACGTGCGGGCGCTCAGTCGACCGAAAAGGTAGAATACGTAAGCCAGG-GATCAGC
65 CATGAAACGGACGTGCGGGCGCTCAGTCGACCGAAAAGGCAGAATACGCAAGCC-GGTGATCAGC
* * * * *
35974622 CCGGTCCCCCATGCGTGCTGCCACAACCTTCGGTCTGGCTGGGGTTTAGACAT-GAATGAACTCC
129 CCGGTCCCCCATACATGCTGCCACAACCCTCGGTCCGACTGGGGTTTAGACATGGAATGAACTCC
* * *** * * *
35974686 GTATGCCAAAGTCAACCCACAAAATGAGCGTGCGGGTGGTGAGCCGATCGGATAGGCATAATGCG
194 GTATGCCAAAGCCAACCCACAAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATGCG
* * * * *
35974751 TAAGCCGGGGATCGGCCCGATCCCTCTCTACGTGCTGTCGGTCCTA
259 CAAGCCGAGGATCGGCCCGATCCCCCTCTACGTGCTGTCGCTCCCA
*
35974797 CTGCCACAACCCTCGATTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 -TGCCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * ** ** * ** ** *
35974862 CATGAAAC-GAGCGTACAGGCGCTCAACCGGTCGAAGAGGCAGAATGTGCAAGCCGAAGATCGGC
65 CATGAAACGGA-CGTGCGGGCGCTCAGTCGACCGAAAAGGCAGAATACGCAAGCCGGTGATCAGC
*
35974926 CCGGTGCCCCC-TACGTGCTGCC
129 CCGGT-CCCCCATACATGCTGCC
35974948 GATCCTATTA
Statistics
Matches: 380, Mismatches: 68, Indels: 14
0.82 0.15 0.03
Matches are distributed among these distances:
303 3 0.01
304 216 0.57
305 158 0.42
306 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (304 bp):
TGCCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
ATGAAACGGACGTGCGGGCGCTCAGTCGACCGAAAAGGCAGAATACGCAAGCCGGTGATCAGCCC
GGTCCCCCATACATGCTGCCACAACCCTCGGTCCGACTGGGGTTTAGACATGGAATGAACTCCGT
ATGCCAAAGCCAACCCACAAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATGCGCA
AGCCGAGGATCGGCCCGATCCCCCTCTACGTGCTGTCGCTCCCA
Found at i:35976240 original size:157 final size:156
Alignment explanation
Indices: 35975742--35976231 Score: 470
Period size: 158 Copynumber: 3.1 Consensus size: 156
35975732 CTCTGTACGC
*
35975742 TTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGCACTCAGC
1 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGCACTCAGC
* * ** * *
35975806 CGGTCA-GAGAGGCAGAATGCGTAAGCCGGGGATTGACCTGATCCACCCTACGTGCTATCGATCC
65 CGG-CAGGAAAGGCAGAATGCGTAAGCCGGGGATCGACCTGATCC-CCCTGTGTGTTGTCGATCC
* * ** *
35975870 TACTACCATAACCCTTGATCTGGTCTGAT
128 TACTACCGTAACCCTCGATCCAGTCCGAT
* * * * * * * *
35975899 CTTACACTGGGAATGAAGTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGCGAGCGCTGAGC
1 -TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGCACTCAGC
* ** * * * *
35975964 CGGC-GAAAAGGCATG-ATGCACAAGTCGGGGATCGACCTGATCCCCCTCTGTGTCTTGTAGGTC
65 CGGCAGGAAAGGCA-GAATGCGTAAGCCGGGGATCGACCTGAT-CCCC-CTGTGTGTTGTCGATC
** * * * ** *
35976027 CCGCTGCCGTAACCATCGATCCGATTGGGGT
127 CTACTACCGTAACCCTCGATCC-AGTCCGAT
* *
35976058 TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAGC
1 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGCACTCAGC
* * * *
35976122 TGGCAGGATAGGCAGAATGCGTAAGCCAGGGATCGACCTGGTCCCCCTGTGTGTTGTCGATCCTA
65 CGGCAGGAAAGGCAGAATGCGTAAGCCGGGGATCGACCTGATCCCCCTGTGTGTTGTCGATCCTA
35976187 CTACCGTAACCCTC-AGTCCAGTCCGAT
130 CTACCGTAACCCTCGA-TCCAGTCCGAT
35976214 GTTAGACTGGGAATGAAC
1 -TTAGACTGGGAATGAAC
35976232 AATGTATGCT
Statistics
Matches: 257, Mismatches: 63, Indels: 25
0.74 0.18 0.07
Matches are distributed among these distances:
156 6 0.02
157 76 0.30
158 143 0.56
159 32 0.12
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.21
Consensus pattern (156 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGCACTCAGCC
GGCAGGAAAGGCAGAATGCGTAAGCCGGGGATCGACCTGATCCCCCTGTGTGTTGTCGATCCTAC
TACCGTAACCCTCGATCCAGTCCGAT
Found at i:35976264 original size:26 final size:25
Alignment explanation
Indices: 35976208--35976266 Score: 66
Period size: 26 Copynumber: 2.4 Consensus size: 25
35976198 CTCAGTCCAG
35976208 TCCG-ATGTTAGACTGGGAATGAAC
1 TCCGTATGTTAGACTGGGAATGAAC
*** *
35976232 AATGTATGCTTAGACTGGGGATGAAC
1 TCCGTATG-TTAGACTGGGAATGAAC
35976258 TCCGTATGT
1 TCCGTATGT
35976267 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
24 1 0.04
25 4 0.15
26 21 0.81
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (25 bp):
TCCGTATGTTAGACTGGGAATGAAC
Found at i:35976830 original size:26 final size:26
Alignment explanation
Indices: 35976778--35976830 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35976768 CCAGTCTGAT
* *
35976778 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
35976804 CTTAGACAT-GGAATGAACTCCGCATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
35976830 C
1 C
35976831 CTAAGCCAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:35977308 original size:26 final size:25
Alignment explanation
Indices: 35977271--35977322 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 25
35977261 CTGGTTTGAT
35977271 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGG-ATGAACTCCATATG
*
35977297 CTTAG-CTAGGGATGAACTCCGTATG
1 CTTAGACT-GGGATGAACTCCATATG
35977322 C
1 C
35977323 CCAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCCATATG
Found at i:35978020 original size:159 final size:158
Alignment explanation
Indices: 35977674--35978038 Score: 378
Period size: 159 Copynumber: 2.3 Consensus size: 158
35977664 AACTCCGTAT
* *
35977674 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAAGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAAGCACTCAG
* ** * * ** * *
35977739 TCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCC
66 CCGACCGGAGAGGCAGAATCCACAAGTCGGGGATCAACCCGATCCCCCCTACGTGCTATCAATCC
*
35977804 TGCTACCGTCACCCTCGATCTGGTCTAA
131 TGCTACCGACACCCTCGATCTGGTCTAA
* * * * * * * * *
35977832 ACTTAGAC-TGGGAATGAAATTCGTTTGCCTAAGTCAACTCATGAAACGAGCATGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAAGCACTCA
* * *
35977896 GCCGACCGGAGAGGCATAATCCACAAGTCGGGGGATCAACCCGATCCCCTCTATGTGCTATCAAT
65 GCCGACCGGAGAGGCAGAATCCACAAGTC-GGGGATCAACCCGATCCCCCCTACGTGCTATCAAT
* * **
35977961 -CTCGCTGCC-ACAACCCTCGGTCTGGT-TGGG
129 CCT-GCTACCGAC-ACCCTCGATCTGGTCT-AA
* * *
35977991 GCTTAGACATGGATTGAACTCCCTATGCCTAAGCCAACCCATAAAACG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACG
35978039 GGCGTACGGG
Statistics
Matches: 164, Mismatches: 37, Indels: 11
0.77 0.17 0.05
Matches are distributed among these distances:
157 1 0.01
158 78 0.48
159 84 0.51
160 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAAGCACTCAG
CCGACCGGAGAGGCAGAATCCACAAGTCGGGGATCAACCCGATCCCCCCTACGTGCTATCAATCC
TGCTACCGACACCCTCGATCTGGTCTAA
Found at i:35978179 original size:26 final size:26
Alignment explanation
Indices: 35978150--35978202 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35978140 CCGGTCTGAT
*
35978150 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
35978176 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
35978202 C
1 C
35978203 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:35978569 original size:26 final size:26
Alignment explanation
Indices: 35978518--35978570 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35978508 TCGATCCAAT
*
35978518 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
35978544 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
35978570 C
1 C
35978571 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35978732 original size:26 final size:26
Alignment explanation
Indices: 35978703--35978752 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
35978693 CCGATCCGAT
35978703 CTTAGAC-TGGGAATGAACTCCGTACG
1 CTTAGACAT-GGAATGAACTCCGTACG
35978729 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
35978753 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTACG
Found at i:35978763 original size:185 final size:184
Alignment explanation
Indices: 35978359--35978972 Score: 643
Period size: 185 Copynumber: 3.3 Consensus size: 184
35978349 TCTGGCTAGG
* * ** *
35978359 GCTTAGACAT-GGAATTAACTCTGTATGCCTAAGCCAACCCATGAAACGATAGTGTGGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCA
** * * * * * * *
35978423 ACCGGTTGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCTCGATCCCCCTTGCGTGTTG-TCAAT
65 ACCGGCCGAAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCCTGTGAGCTGCT-GAT
* * * * * *
35978487 CCTGGTGCCACAACCCTC-GATTCGATCCAATCTTAGACTGGGAATGAACTTCATAT
129 CCTGCTGCCGCAACCCTCGGA-CCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
35978543 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAA
* *** *
35978608 CCGGCCGAAGAGGCAGAATGCGTACGCCAAGGATCGGCCCGATCCCCCCCTGTGAGCTGCTGGTC
66 CCGGCCGAAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGAT-CCCCCCTGTGAGCTGCTGATC
* *
35978673 CTGCTGCCGTAACCCTCGGACCGATCCGATCTTAGACTGGGAATGAACTCCGTAC
130 CTGCTGCCGCAACCCTCGGACCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
35978728 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCTTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCA
* * * * * *
35978792 ACCGGTC-AGAGAGGCAGAATGCGTAAGCTGGGGATCGACCTGGT-CCCCCTGCT-A-CTACCGA
65 ACCGGCCGA-AGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCCTG-TGAGCTGCTGA
** * * *
35978853 TCCTGCTGTTGCAACCTTCGGTCCGATCCGATCTTAGA-TTGGAATGAACTCCGTAT
128 TCCTGCTGCCGCAACCCTCGGACCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * ** *
35978909 GCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAATGCATGAAACGAGCGTATGGGCGCTCA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCA
35978973 GTCGACCGGA
Statistics
Matches: 357, Mismatches: 65, Indels: 19
0.81 0.15 0.04
Matches are distributed among these distances:
180 1 0.00
181 69 0.19
182 37 0.10
183 9 0.03
184 91 0.25
185 146 0.41
186 4 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (184 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAA
CCGGCCGAAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCCTGTGAGCTGCTGATCC
TGCTGCCGCAACCCTCGGACCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:35978913 original size:25 final size:26
Alignment explanation
Indices: 35978885--35978936 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35978875 CCGATCCGAT
* *
35978885 CTTAGA-TTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
35978910 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
35978936 C
1 C
35978937 CTAAGTCAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:35979363 original size:159 final size:158
Alignment explanation
Indices: 35979071--35979374 Score: 369
Period size: 159 Copynumber: 1.9 Consensus size: 158
35979061 GTCCTGCTAG
* * *
35979071 CACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCTACA
1 CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAACCAACCTACA
* ** * * * * *
35979136 AAACGAGCGTACGGGTGCTGAGCCGACCGGAGAGGCATAATACGTAAGCCAGGGATCGGCCTGAT
66 AAACGAGCATACGGGCACTCAGCCGACCAGAGAGGCAGAATACATAAGCCAGGGATCGGCCAGAT
35979201 CCCCCTCTGCGTGCTGTCGGTCCCGCTGC
131 CCCCC-CTGCGTGCTGTCGGTCCCGCTGC
* *
35979230 CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAAAGC-AC
1 CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAACC-AACCTAC
* * * * * * * * *
35979294 GAAACGGGCATGCGGGCACTCAGTCGGCCAGAGAGGGAGAATGCATAAGTCGGGGATCGGCCCAG
65 AAAACGAGCATACGGGCACTCAGCCGACCAGAGAGGCAGAATACATAAGCCAGGGATCGG-CCAG
35979359 -TCCCCCCTGCGTGCTG
129 ATCCCCCCTGCGTGCTG
35979375 CCAATCCTAC
Statistics
Matches: 121, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
158 10 0.08
159 105 0.87
160 6 0.05
ACGTcount: A:0.24, C:0.31, G:0.29, T:0.17
Consensus pattern (158 bp):
CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAACCAACCTACA
AAACGAGCATACGGGCACTCAGCCGACCAGAGAGGCAGAATACATAAGCCAGGGATCGGCCAGAT
CCCCCCTGCGTGCTGTCGGTCCCGCTGC
Found at i:35979440 original size:26 final size:26
Alignment explanation
Indices: 35979411--35979461 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
35979401 CCGGTCTGAT
35979411 CTTAGACT-GTGAATGAACTCCGTATA
1 CTTAGACTAG-GAATGAACTCCGTATA
*
35979437 CTTAGACTAGGAATGAACTCTGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
35979462 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATA
Found at i:35979721 original size:527 final size:523
Alignment explanation
Indices: 35978728--35979754 Score: 1148
Period size: 527 Copynumber: 2.0 Consensus size: 523
35978718 AACTCCGTAC
* * * * * **
35978728 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCTTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAAACCACGAAACGAGCATGCGGGCACTCAA
* * ** * *
35978793 CCGGTCAGAGAGGCAGAATGCGTAAGCTGGGGATCGACCTGGTCCCCCTGCTACTACCGATCCTG
66 CCGGCCAGAGAGGCAGAATGCATAAGCTGGGGATCGACCCAGTCCCCCTGCTACTACCAATCCTA
*** * * * * *
35978858 CTGTTGCAACCTTCGGTCCGATCCGATCTTAGATTGGAATGAACTCCGTATGCTTAGACTGGGGA
131 CTACCGCAACCTTCAGTCCGATCCGATCTTAGACTGGAATGAACTCCGTATACTTAGACTAGGAA
* ** * * ** * *
35978923 TAAACTCCGTATGCCTAAGTCAATGCATGAAACGAGCGTATGGGCGCTCAGTCGACCGGAGAGGC
196 TAAACTCCGTATGCCTAAGTCAATCCACAAAACGAGAGTATGGGCACTCAACCGACCAGAAAGGC
*
35978988 CGATCGAAAAGGCATAATATACAACACAGGGATCAGCCCAGTCCCCCTCTACGTGCTACCGATCC
261 CGATCGAAAAGGCATAATACACAACACAGGGATCAGCCCAGTCCCCCTCTACGTGCTACCGATCC
* *
35979053 CGCTGCCAGTCCTGCTAGCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATAAACTCCGTA
326 CGCTGCCAGTCCTGCTAGCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATAAACTCCGTA
* * * * * **
35979118 TGCCTAAGCCAACCTACAAAACGAGCGTACGGGTGCTGAGCCGACCGGAGAGGCATAATACGTAA
391 TGCCTAAGCCAACCCACAAAACGAGCGTACAGGCGCTCAGCCGACCGGAGAGGCAGAATACACAA
*
35979183 GCCAGGGATCGGCCTGATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGAC
456 GCCAGGGATCGGCCTGAT-CCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGGTCCGAC
35979248 TGGG
520 TGGG
* * *
35979252 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAAAGCACGAAACGGGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAAACCACGAAACGAGCATGCGGGCACTCAA
* * * * *
35979317 TCGGCCAGAGAGGGAGAATGCATAAG-TCGGGGATCGGCCCAGTCCCCCCTGCGTGCTGCCAATC
66 CCGGCCAGAGAGGCAGAATGCATAAGCT-GGGGATCGACCCAGT-CCCCCTGC-TACTACCAATC
* *
35979381 CTACTACCGCAAGCC-TCAGTCCGGTCTGATCTTAGACTGTGAATGAACTCCGTATACTTAGACT
128 CTACTACCGCAA-CCTTCAGTCCGATCCGATCTTAGACTG-GAATGAACTCCGTATACTTAGACT
* * * *
35979445 AGGAATGAACTCTGTATGCCTAAGTCAA-CCAACAAAATGAGAGTATGGGCACTCAACCGACTAG
191 AGGAATAAACTCCGTATGCCTAAGTCAATCC-ACAAAACGAGAGTATGGGCACTCAACCGACCAG
* * * * * * *
35979509 AAAGGCTGATCGAAGAGGCATAATGCACAATC-CAGGGATCAGCCCGGTCCCCTTCTGCGTGTTA
255 AAAGGCCGATCGAAAAGGCATAATACACAA-CACAGGGATCAGCCCAGTCCCCCTCTACGTGCTA
* * ** * * * ** * *
35979573 CTGATCCTGCTGTTAGTCTTG-TTGCTACAACCTTCAGTCCGGTTGGGGTTTAGACATGGAATGA
319 CCGATCCCGCTGCCAGTCCTGCTAGC-ACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATAA
* * * * * * * * *
35979637 ACTCCGTATGCCTCAGCCAACCCACGAAATGAGTGTGCAGGCGTTCAGTCGATCGGAGAGGTAGA
383 ACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACAGGCGCTCAGCCGACCGGAGAGGCAGA
* * * *
35979702 ATGCACAAGCC-GAGGATCGGTCTGGTCCCCTCTGCGTGCTGTCGATCCTGCTG
448 ATACACAAGCCAG-GGATCGGCCTGATCCCCTCTGCGTGCTGTCGATCCCGCTG
35979755 TCGTAACCCT
Statistics
Matches: 408, Mismatches: 86, Indels: 16
0.80 0.17 0.03
Matches are distributed among these distances:
523 1 0.00
524 89 0.22
525 8 0.02
526 66 0.16
527 243 0.60
528 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (523 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAAACCACGAAACGAGCATGCGGGCACTCAA
CCGGCCAGAGAGGCAGAATGCATAAGCTGGGGATCGACCCAGTCCCCCTGCTACTACCAATCCTA
CTACCGCAACCTTCAGTCCGATCCGATCTTAGACTGGAATGAACTCCGTATACTTAGACTAGGAA
TAAACTCCGTATGCCTAAGTCAATCCACAAAACGAGAGTATGGGCACTCAACCGACCAGAAAGGC
CGATCGAAAAGGCATAATACACAACACAGGGATCAGCCCAGTCCCCCTCTACGTGCTACCGATCC
CGCTGCCAGTCCTGCTAGCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATAAACTCCGTA
TGCCTAAGCCAACCCACAAAACGAGCGTACAGGCGCTCAGCCGACCGGAGAGGCAGAATACACAA
GCCAGGGATCGGCCTGATCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGGTCCGACT
GGG
Found at i:35980535 original size:26 final size:26
Alignment explanation
Indices: 35980498--35980549 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35980488 TCATGGCTCA
35980498 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
35980524 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
35980550 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:35980710 original size:26 final size:26
Alignment explanation
Indices: 35980681--35980733 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35980671 CCGGTCCAAT
* *
35980681 CTTAGCCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35980707 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
35980733 C
1 C
35980734 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35981365 original size:902 final size:904
Alignment explanation
Indices: 35979622--35981611 Score: 2954
Period size: 902 Copynumber: 2.2 Consensus size: 904
35979612 CGGTTGGGGT
* * * * * **
35979622 TTAGACATGGAATGAACTCCGTATGCCTCAGCCAACCCACGAAATGAGTGTGCAGGCGTTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAACC
* * * *
35979687 GATCGGAGAGGTAGAATGCACAAGCCGAGGATCGGTCTGGTCCCCTCTGCGTGCTGTCGATCCTG
66 GATCGGAGAGGTAGAATGCGCAAGCCAAGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTG
* * * * * * * *
35979752 CTGTCGTAACCCTTGGTCCAGTCCAATCTTATATTGGGAATGAACTCTATATGCTTATACTGGGG
131 CTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGG
*** * * *
35979817 ATGAACTTTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAGCTGACCGGAGAGG
196 ATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAACCGACCAGAGAGG
* * * * * *
35979882 CAGGATGTGTAAGCCGGGGATTGAACGGGTGGTAGGTGAGTTTAAGCACATCTTCATATTTCTTC
261 CAGGATGCGCAAGCCGAGGATCGAACGGGTGGTAGGTGAGTTCAAGCACATCTTCATATTTCTCC
*
35979947 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGT
326 CATACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGT
* * * *
35980012 TTCGTGGCAAGATGACCCATTTTCTATTTTTCATGATTTTTGAAACTTTTTATCGGTTTGGGATT
391 TTCATGGCAAGATGACCCATTTTCTATTTTTCATGATTTTTGAAACTTTTTAGCGGTTCGAGATT
35980077 TTTTAAAATTTTTGTAGAAAGAGTTTTGTCCCCAAATTTAGTAGAGGGGATCCTTGTATTTTTTT
456 TTTTAAAATTTTTGTAGAAAGAGTTTTGTCCCCAAATTTAGTAGAGGGGATCCTTGTATTTTTTT
* *
35980142 TGGCATGAACAAAAAAATTCAGCCAAAAACTCAAAGTGGAGAAGATTTTGTGACCGTTTGAAAAA
521 TGGCAAGAAAAAAAAAATTCAGCCAAAAACTCAAAGTGGAGAAGATTTTGTGACCGTTTGAAAAA
35980207 GTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
586 GTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
* *
35980272 AAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGGCAAGTACCAGC
651 AAGGGGGTGTGAGTTCTTGAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* ** *
35980337 ACCCATCGCACATCATGTGCGCACACCTCCTGGCCCCCTTAATCGTCGGAACCCCCAATGCCACC
716 ACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCTCAATCGTCGGAACCCCCAATGCCACC
* * ** *
35980402 GGTTAGGCTCTCCGACGATGCTCCGGTGATGGTGCCTTGGGCAAAAAAAATACGGCACCAGCACA
781 GGTTAGCCTCTCCGACGATGCTCCGATGATGGTGCCCCGAGCAAAAAAAATACGGCACCAGCACA
* * *
35980467 TGCCCGAGCCCAGTATGTGGATCATGGCTC-A-TTAGACTGGGAATGAACTCCGTATGC
846 TGCCCGAGCCCAGCATGTGCACCATGGCTCAACTTAGACTGGGAATGAACTCCGTATGC
* *
35980524 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGGAACGAGCGTGCAGGTGCTCAACC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAACC
* * * * * * *
35980589 GACCGGAGAGGCAGAATGCGCAAGTCAAGGATCCGCCTGGTCCCCCCTGCATGCTGTCAATCCTA
66 GATCGGAGAGGTAGAATGCGCAAGCCAAGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTG
* * * *
35980654 CTGCCACAACCATCGGTCCGGTCCAATCTTAGCCTGGGAATGAACTCCGTATGCTTAGACTGGGG
131 CTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGG
** *
35980719 ATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCACTCAACCGACCAGAGAGG
196 ATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAACCGACCAGAGAGG
*
35980784 CAGGATGCGCAAGCCGAGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGC
261 CAGGATGCGCAAGCCGAGGATCGAACGGGTGGTAGGTGAGTTCAAGCACATCTTCATATTTCT-C
35980849 CCA-ACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAG
325 CCATACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAG
* *
35980913 TTTCATGGCAAGATGACCCGTTTTTTATTTTTCATGATTTTTGAAACTTTTT-GCGGTTCGAG-T
390 TTTCATGGCAAGATGACCCATTTTCTATTTTTCATGATTTTTGAAACTTTTTAGCGGTTCGAGAT
* * * *
35980976 TTTTTAAACTTTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTT
455 TTTTTAAAATTTTTGTAGAAAGAGTTTTGTCCCCAAATTTAGTAGAGGGGATCCTTGTATTTTTT
*
35981041 TTGGCAAGCAAAAAAAAAATTCAGCTAAAAACT-AGAAGTGGAGAAGATTTTGTGACCGTTTGAA
520 TTGGCAAG-AAAAAAAAAATTCAGCCAAAAACTCA-AAGTGGAGAAGATTTTGTGACCGTTTG-A
*
35981105 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCT
582 AAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCT
35981170 CTTTAAGGGGGTGTGAGTTCTTGAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
647 CTTTAAGGGGGTGTGAGTTCTTGAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
*
35981235 CAGCACCCATGGCACATCATGTGCGCACACCCCCCAGCCCCC-CAATCGTCGGAACCCCCAATGC
712 CAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCTCAATCGTCGGAACCCCCAATGC
** **
35981299 CGTCGGTTAGCCTCTCCGACGATGCTCCGATGATGGTGCCCCGAGCGAAAAAAAATGTGGCACCA
777 CACCGGTTAGCCTCTCCGACGATGCTCCGATGATGGTGCCCCGAGC-AAAAAAAATACGGCACCA
* *
35981364 GCACATGCTCGAGCCCAGCATGTGCACCGTGGCTCAAAATCTTAGACTGGGAATGAACTCCGTAT
841 GCACATGCCCGAGCCCAGCATGTGCACCATGGCTC--AA-CTTAGACTGGGAATGAACTCCGTAT
35981429 GC
903 GC
* * *
35981431 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAAGCCACGAAACGAACGTGCGGGTGCT-AAGC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAA-C
* * * * * *
35981495 CGATCGGAGAGGTAAAACGTGCAAGCCAGGGATCGGCC-GGTCCCCCCTACGTGCTATCGATCCT
65 CGATCGGAGAGGTAGAATGCGCAAGCCAAGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCT
* * ** *
35981559 GCTGCTGCAACCCTCGTTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTAT
130 GCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTAT
35981612 TCATAAGTCA
Statistics
Matches: 966, Mismatches: 111, Indels: 18
0.88 0.10 0.02
Matches are distributed among these distances:
900 70 0.07
901 116 0.12
902 597 0.62
903 3 0.00
905 1 0.00
906 67 0.07
907 112 0.12
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (904 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAACC
GATCGGAGAGGTAGAATGCGCAAGCCAAGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGG
ATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAACCGACCAGAGAGG
CAGGATGCGCAAGCCGAGGATCGAACGGGTGGTAGGTGAGTTCAAGCACATCTTCATATTTCTCC
CATACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGT
TTCATGGCAAGATGACCCATTTTCTATTTTTCATGATTTTTGAAACTTTTTAGCGGTTCGAGATT
TTTTAAAATTTTTGTAGAAAGAGTTTTGTCCCCAAATTTAGTAGAGGGGATCCTTGTATTTTTTT
TGGCAAGAAAAAAAAAATTCAGCCAAAAACTCAAAGTGGAGAAGATTTTGTGACCGTTTGAAAAA
GTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
AAGGGGGTGTGAGTTCTTGAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
ACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCTCAATCGTCGGAACCCCCAATGCCACC
GGTTAGCCTCTCCGACGATGCTCCGATGATGGTGCCCCGAGCAAAAAAAATACGGCACCAGCACA
TGCCCGAGCCCAGCATGTGCACCATGGCTCAACTTAGACTGGGAATGAACTCCGTATGC
Found at i:35981442 original size:26 final size:26
Alignment explanation
Indices: 35981404--35981456 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35981394 GGCTCAAAAT
35981404 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35981430 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35981456 C
1 C
35981457 CTAAGCCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35981945 original size:26 final size:26
Alignment explanation
Indices: 35981904--35981956 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35981894 CCGATCCGAT
35981904 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
35981930 CTTAGACTAAGG-ATGAACTCTGTATG
1 CTTAGACT-AGGAATGAACTCTGTATG
35981956 C
1 C
35981957 CTAAATCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:35983312 original size:184 final size:182
Alignment explanation
Indices: 35983030--35983393 Score: 451
Period size: 184 Copynumber: 2.0 Consensus size: 182
35983020 TCTGGCTAGG
* * ** * * *
35983030 GCTTAGACACGGAATAAACTCTGTATGCCTAAGCCAACCCACAAAATGAGTGTGCGGGTGTTCAG
1 GCTTAGACACGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGTTCAA
* * * * *
35983095 CCGGTCGGAGAGGCAGAATGCACAGGTCGGGGATCGA-CTCGGTCCCCCCTGCGTGTTGCCAATC
66 CCGATCGGAGAGGCAGAATGCACAAGCCGGGGAT-GAGCTC-GACCCCCCTGCGTGCTGCCAATC
* * ** **
35983159 TTACTGCCGTAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTGT
129 CTACTGCCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAAC-CCGTGT
* * * *
35983214 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACCAAACGAGCATATGGGCGTTCAA
1 GCTTAGACACGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGTTCAA
* * *
35983279 CCGATCGGAGAGGCAGAATGCACAAGCCGGGGATTAGCTCGACCCCCCTGCGTGCTGTCGATCCT
66 CCGATCGGAGAGGCAGAATGCACAAGCCGGGGATGAGCTCGACCCCCCTGCGTGCTGCCAATCCT
* *
35983344 GCTGCCGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACCCGT
131 ACTGCCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACCCGT
35983394 ATGCAAAAGT
Statistics
Matches: 152, Mismatches: 27, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
182 4 0.03
183 60 0.39
184 88 0.58
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (182 bp):
GCTTAGACACGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGTTCAA
CCGATCGGAGAGGCAGAATGCACAAGCCGGGGATGAGCTCGACCCCCCTGCGTGCTGCCAATCCT
ACTGCCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACCCGTGT
Found at i:35984058 original size:26 final size:26
Alignment explanation
Indices: 35984029--35984081 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35984019 CCGGTCCGAT
35984029 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
35984055 CTTAGACATGGAATGAACTCGGTATG
1 CTTAGACATGGAATGAACTCCGTATG
35984081 C
1 C
35984082 CTAAGCCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:35984241 original size:195 final size:197
Alignment explanation
Indices: 35983857--35984250 Score: 474
Period size: 195 Copynumber: 2.0 Consensus size: 197
35983847 TCCGACTGGG
* ** *
35983857 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCTACTCACGAAATGAGCGTAGGAGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCACGAAACAAGCGTAGGAGAGCTTAG
* **
35983922 CCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGGTTCGATCCCCCCTTACGTGCTACCAATC
66 CCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCCTTACGTGCTACCAATC
* * * * * ** *
35983987 CTGTTGCTGGTCCTGCTATCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGT
131 CTGCTACTGGTCCTACTACCACAACCCTCAATCCGGTCCGAGCTTAGACTAGGAATGAACTCCGT
35984052 AT
196 AT
* *
35984054 GCTTAGACATGGAATGAACTCGGTATGCCTAAGCCAA-TCCACGAAACAAGTGT-GTGA-AGCTT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACT-CACGAAACAAGCGTAG-GAGAGCTT
* * * * * ** *
35984116 AGCTGGCCGGAGAGGTAGAATGCGCAAGCTAGGGAAT-GGCCCGGTCCCCCC-TACGTGCTGTCT
64 AGCCGGCCGGAGAGGCAGAATGCACAAGCCAGGG-ATCGGCCCGATCCCCCCTTACGTGCTACCA
* * *
35984179 ATCCTGCTACTGGTCTTACTGCCACAACCCTCAATCCGGTCTGAGCTTAGACTAGGAATGAACTC
128 ATCCTGCTACTGGTCCTACTACCACAACCCTCAATCCGGTCCGAGCTTAGACTAGGAATGAACTC
35984244 CGTAT
193 CGTAT
35984249 GC
1 GC
35984251 CGAAGCCAAC
Statistics
Matches: 166, Mismatches: 28, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
195 70 0.42
196 46 0.28
197 50 0.30
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (197 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCACGAAACAAGCGTAGGAGAGCTTAG
CCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCCTTACGTGCTACCAATC
CTGCTACTGGTCCTACTACCACAACCCTCAATCCGGTCCGAGCTTAGACTAGGAATGAACTCCGT
AT
Found at i:35984525 original size:159 final size:160
Alignment explanation
Indices: 35984196--35984529 Score: 352
Period size: 159 Copynumber: 2.1 Consensus size: 160
35984186 TACTGGTCTT
* * ** *
35984196 ACTGCCACAACCCTCAATCCGGTCTGAGCTTAGACTAGGAATGAACTCCGTATGCCGAAGCCAAC
1 ACTGCCACAACCCTCGATCCAGTCCAAGCTTAGACTAGGAATGAACTCCGTATGCAGAAGCCAAC
* * * *
35984261 CCACGAAACGAGCGTACGGGCGCTTAGCCGACTGAAGAGGCAGAATGCGTAAGCCAGAGACCGAC
66 CCACGAAACAAGCGTACGGGCGCTGAGCCGACTGAAGAGGCAGAACGCGCAAGCCAGAGACCGAC
* *
35984326 CCGATCCCATCCTACGTCCTGTCAATCTTG
131 CCGATCCCATCCTACGTCCTGCCAATCTCG
* * * * * **
35984356 -CTGTCGCAACCCTCGATCCAGTCCAATCTTTGACTAGGAATGAACTCCGTATGCATAAGTTAAC
1 ACTGCCACAACCCTCGATCCAGTCCAAGCTTAGACTAGGAATGAACTCCGTATGCAGAAGCCAAC
* * * * * *
35984420 CCACGAAACAAGCGTGCGGTCGCTGAGCC-AGCTGAAGAGGCATAACGCGCAAGCCGGGGATCGA
66 CCACGAAACAAGCGTACGGGCGCTGAGCCGA-CTGAAGAGGCAGAACGCGCAAGCCAGAGACCGA
* * * * **
35984484 CCCGGTCACCCT-CTTCGTGCTGCCGGTC-CG
130 CCCGATC-CCATCCTACGTCCTGCCAATCTCG
35984514 ACTGCCACAACCCTCG
1 ACTGCCACAACCCTCG
35984530 GTCTGGCTGG
Statistics
Matches: 139, Mismatches: 32, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
158 2 0.01
159 134 0.96
160 3 0.02
ACGTcount: A:0.25, C:0.33, G:0.24, T:0.18
Consensus pattern (160 bp):
ACTGCCACAACCCTCGATCCAGTCCAAGCTTAGACTAGGAATGAACTCCGTATGCAGAAGCCAAC
CCACGAAACAAGCGTACGGGCGCTGAGCCGACTGAAGAGGCAGAACGCGCAAGCCAGAGACCGAC
CCGATCCCATCCTACGTCCTGCCAATCTCG
Found at i:35984751 original size:26 final size:26
Alignment explanation
Indices: 35984700--35984752 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
35984690 CCGATCCAAT
*
35984700 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGATTGGGAATGAACTTCATATG
35984726 CTTAGATTAGGG-ATGAAC-TCTATATG
1 CTTAGATT-GGGAATGAACTTC-ATATG
35984752 C
1 C
35984753 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.08
26 19 0.79
27 3 0.12
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTTCATATG
Found at i:35985483 original size:26 final size:26
Alignment explanation
Indices: 35985432--35985485 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
35985422 GGCTCAGAAT
**
35985432 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
35985458 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
35985484 CT
1 CT
35985486 AAGCCAGCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35987122 original size:26 final size:26
Alignment explanation
Indices: 35987093--35987145 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35987083 GGCTCAAAAT
*
35987093 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGA-TAGGGAATGAACTCCGTATG
*
35987119 CTTAGATATGGAATGAACTCCGTATG
1 CTTAGATAGGGAATGAACTCCGTATG
35987145 C
1 C
35987146 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGATAGGGAATGAACTCCGTATG
Found at i:35987533 original size:171 final size:171
Alignment explanation
Indices: 35987277--35987708 Score: 449
Period size: 171 Copynumber: 2.5 Consensus size: 171
35987267 CCGGTGCAAT
* * * ** * * *
35987277 CTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGTGTGCGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGACAGTACGGGCGCTCAG
* * * * * *
35987341 CTGACCGAAGAGGCATAATGCGTAAGCCGGGGATCGGCTCGGTCCCCCTTTGCATGCTGTCGATC
65 CCGACCGAAGAGGCATAATGCGTAAGCCGGGGATCAGCTCGGTCCCCATCTGCACGCTGCCGATC
* ** * * * ***
35987406 CCGCTTTCGGTCTTACTACCACAACCCTCGGTATGGCTGGGG
130 CCGATGCCAGTCCTACAACCACAACCCTCGGTACAACTGGGG
* * *
35987448 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGCAACGACAGTACGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGACAGTACGGGCGCTCAGC
* * *
35987513 CGACCGGAA-AGGCATAATGCGTAAGCCGGTGATCAGCTCGGTCCCCATCTGCGCGCTGCCGCTC
66 CGACC-GAAGAGGCATAATGCGTAAGCCGGGGATCAGCTCGGTCCCCATCTGCACGCTGCCGATC
* * *
35987577 TCGATGCCAGTCCTGCAACCACAACCCTCGGTCCAACTGGGG
130 CCGATGCCAGTCCTACAACCACAACCCTCGGTACAACTGGGG
* * ** *
35987619 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGC-GTGTGGGCGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-CAGTACGGGCGCTCAG
* *
35987683 CCGACC-AGAGAGGCAAAATGCATAAG
65 CCGACCGA-AGAGGCATAATGCGTAAG
35987709 TTAGGGATCA
Statistics
Matches: 214, Mismatches: 42, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
169 1 0.00
170 1 0.00
171 207 0.97
172 5 0.02
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (171 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGACAGTACGGGCGCTCAGC
CGACCGAAGAGGCATAATGCGTAAGCCGGGGATCAGCTCGGTCCCCATCTGCACGCTGCCGATCC
CGATGCCAGTCCTACAACCACAACCCTCGGTACAACTGGGG
Found at i:35987775 original size:171 final size:171
Alignment explanation
Indices: 35987423--35987747 Score: 386
Period size: 171 Copynumber: 1.9 Consensus size: 171
35987413 CGGTCTTACT
**** *
35987423 ACCACAACCCTCGGTATGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCA
1 ACCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * * * * *
35987488 TGCAACGACAGTACGGGTGCTCAGCCGACCGGAAAGGCATAATGCGTAAGCCGGTGATCAGCTCG
66 TGAAACAACAGTACGGGCGCTCAACCGACCAGAAAGGCAAAATGCATAAGCAGGTGATCAGCCCG
* * *
35987553 GTCCCCATCTGCGCGCTGCCGCTCTCGATGCCAGTCCTGCA
131 GTCCCCACCTGCGCGCTACCGATCTCGATGCCAGTCCTGCA
*
35987594 ACCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCA
1 ACCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
** * *
35987659 TGAAACAAGC-GTGTGGGCGCTCAACCGACCAGAGAGGCAAAATGCATAAGTTAGG-GATCAGCC
66 TGAAACAA-CAGTACGGGCGCTCAACCGACCAGAAAGGCAAAATGCATAAG-CAGGTGATCAGCC
* *
35987722 CGGTTCCCC-CCTGCGTGCTACTGATC
129 CGG-TCCCCACCTGCGCGCTACCGATC
35987748 CTACTGTTGG
Statistics
Matches: 127, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
171 119 0.94
172 8 0.06
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (171 bp):
ACCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
TGAAACAACAGTACGGGCGCTCAACCGACCAGAAAGGCAAAATGCATAAGCAGGTGATCAGCCCG
GTCCCCACCTGCGCGCTACCGATCTCGATGCCAGTCCTGCA
Found at i:35987819 original size:26 final size:26
Alignment explanation
Indices: 35987790--35987842 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35987780 CCGATCCGAT
35987790 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
35987816 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
35987842 C
1 C
35987843 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:35989157 original size:26 final size:26
Alignment explanation
Indices: 35989119--35989171 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
35989109 GGCTCAAAAT
35989119 CTTAGACTAGGAATGAAC-TCTGTATG
1 CTTAGACTAGGAATGAACTTC-GTATG
35989145 CTTAGAC-ATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATGAACTTCGTATG
35989171 C
1 C
35989172 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 22 0.88
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:35990779 original size:158 final size:158
Alignment explanation
Indices: 35990500--35990792 Score: 444
Period size: 158 Copynumber: 1.9 Consensus size: 158
35990490 GTCCTACTAC
* * *
35990500 CGTAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACG
1 CGTAACCCTTGGTCCGATCTAATATTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACG
** * * *
35990565 AAACGAGCGTGCGGGCGTTCAGCTGACCAGAGAGGTAGAATGCACAAGCCGGGGATCGGTCC-GG
66 AAACGAGCGTGCGGGCACTCAGCAGACCAGAGAGGCAGAATGCACAAGCCAGGGATCGG-CCTGG
35990629 TCCCCCCTGCATGCTGTCGATCCTATTGT
130 TCCCCCCTGCATGCTGTCGATCCTATTGT
*
35990658 CGTAACCCTTGGTCCGATCTAATATTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACG
1 CGTAACCCTTGGTCCGATCTAATATTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * * *
35990723 AAACGAGTGTGCGGGCACTGAGCAGACCGGAGAGGCATAATGCACAAGTCAGGGATCGGCCTGGT
66 AAACGAGCGTGCGGGCACTCAGCAGACCAGAGAGGCAGAATGCACAAGCCAGGGATCGGCCTGGT
35990788 CCCCC
131 CCCCC
35990793 TCTAGGTGCT
Statistics
Matches: 120, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
157 2 0.02
158 118 0.98
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (158 bp):
CGTAACCCTTGGTCCGATCTAATATTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACG
AAACGAGCGTGCGGGCACTCAGCAGACCAGAGAGGCAGAATGCACAAGCCAGGGATCGGCCTGGT
CCCCCCTGCATGCTGTCGATCCTATTGT
Found at i:35991361 original size:447 final size:447
Alignment explanation
Indices: 35990523--35991368 Score: 1046
Period size: 447 Copynumber: 1.9 Consensus size: 447
35990513 CCGATCTGAT
* *
35990523 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGATCAGC
* ** * * *
35990588 TGACCAGAGAGGTAGAATGCACAAGCCGGGGATCGGTCCGGTCCCCCCTGCATGCTGTCGATCCT
66 TGACCAGAGAGGCAGAATGCACAAGCCACGGATCAGCCCGATCCCCCCTGCATGCTGTCGATCCT
* ** * * * * *
35990653 ATTGTCGTAACCCTTGGTCCGATCTAATATTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC
131 ACTACCGCAACCCTCGATCCGATCTAATATTAGACTAGGAATGAACTCCATATGCATAAGTCAAC
* * * * * *
35990718 CCACGAAACGAGTGTGCGGGCACTGAGCAGACCGGAGAGGCATAATGCACAAGTCAGGGATCGGC
196 CCACGAAACAAGCGTGCGGGCACTGAGCAGACCGAAAAGGCATAATGCACAAGCCAGGGATCAGC
* * **
35990783 CTGGTCCCCCTCTAGGTGCTGCCGGTCCCGTTGCCACAACCCTCGATTCGGTTGGGGCTTAGACA
261 CTGATCCCCCTCTAGGTGCTACCGGTCCCACTGCCACAACCCTCGATTCGGTTGGGGCTTAGACA
* * ** *
35990848 TGCAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTACGGGCGCTCAGCCGACCAGA
326 TGCAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGACGTACAGGCGCTCAGCCGACCAGA
35990913 GAGGCAGAATACGCAAGTCAACCCACGAAATGAGCGTGTGGGAATGAACTTCGTATG
391 GAGGCAGAATACGCAAGTCAACCCACGAAATGAGCGTGTGGGAATGAACTTCGTATG
* * * *
35990970 CTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGC-ATCGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGATC-AG
* * * *
35991034 -TCGATCGGAGAGGCATAATGCACGAA-CCACGGATCAGCCCGATCCCCCCTGCGTGCTGTCGAT
65 CT-GACCAGAGAGGCAGAATGCAC-AAGCCACGGATCAGCCCGATCCCCCCTGCATGCTGTCGAT
* * * * *
35991097 CCTGCTACCGCAACCCTCGATCCGGT-TCGATCTTAGACTGGGAATGAACTCCATATGCATAAGT
128 CCTACTACCGCAACCCTCGATCCGATCT-AATATTAGACTAGGAATGAACTCCATATGCATAAGT
* * * *
35991161 CAACCTACGAAACAAGCGTGTGGGCGCTGAGCTAG-CCGAAAAGGCATAATCTGGA-AA-CCAGG
192 CAACCCACGAAACAAGCGTGCGGGCACTGAGC-AGACCGAAAAGGCATAA--TGCACAAGCCAGG
* *
35991223 GATCAG-CTCGATCCCCTTCT-GTGTGCTACCGGTCCCACTGCCACAACCCTCG-GTCTGGTTGG
254 GATCAGCCT-GATCCCCCTCTAG-GTGCTACCGGTCCCACTGCCACAACCCTCGATTC-GGTTGG
* * *
35991285 GGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACAAAACGGACGTGCAGGCGCTCA
316 GGCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGACGTACAGGCGCTCA
*
35991350 GCCGTCCAGAGAGGCAGAA
381 GCCGACCAGAGAGGCAGAA
35991369 CGCACAAGCC
Statistics
Matches: 335, Mismatches: 54, Indels: 20
0.82 0.13 0.05
Matches are distributed among these distances:
446 9 0.03
447 317 0.95
448 6 0.02
449 3 0.01
ACGTcount: A:0.26, C:0.29, G:0.27, T:0.19
Consensus pattern (447 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGATCAGC
TGACCAGAGAGGCAGAATGCACAAGCCACGGATCAGCCCGATCCCCCCTGCATGCTGTCGATCCT
ACTACCGCAACCCTCGATCCGATCTAATATTAGACTAGGAATGAACTCCATATGCATAAGTCAAC
CCACGAAACAAGCGTGCGGGCACTGAGCAGACCGAAAAGGCATAATGCACAAGCCAGGGATCAGC
CTGATCCCCCTCTAGGTGCTACCGGTCCCACTGCCACAACCCTCGATTCGGTTGGGGCTTAGACA
TGCAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGACGTACAGGCGCTCAGCCGACCAGA
GAGGCAGAATACGCAAGTCAACCCACGAAATGAGCGTGTGGGAATGAACTTCGTATG
Found at i:35991482 original size:158 final size:157
Alignment explanation
Indices: 35990970--35992617 Score: 691
Period size: 159 Copynumber: 10.2 Consensus size: 157
35990960 ACTTCGTATG
* * * * * *
35990970 CTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGC-ATCGAG
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC-AG
* * * * *
35991034 TCGAT-CGGAGAGGCATAATGCACGAA-CC-ACGGATC-AGCCCGATCCCCCCTGCGTGCTGTCG
65 CCG-TCCAGAGAGGCAGAATGCGC-AAGCCGA-GGATCGA-CCCGGTCCCCCCTGCGTGCT-TCG
* * * *
35991095 ATCCTGCTACCGCAACCCTCGATCCGGT-TCGAT
125 ATCCTGCTACCACAACCTTCGGTCTGGTCT-GAT
* * * * * * *
35991128 CTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCTACGAAACAAGCGTGTGGGCGCTGAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * *
35991193 TAG-CC-GAAAAGGCATAAT-CTGGAAACC-AGGGATC-AGCTCGATCCCCTTCTGTGTGCTACC
66 -CGTCCAG-AGAGGCAGAATGC-GCAAGCCGA-GGATCGA-CCCGGTCCCC-CCTGCGTGCT-TC
* ** * * **
35991253 GGTCCCACTGCCACAACCCTCGGTCTGGT-TGGGG
124 GATCCTGCTACCACAACCTTCGGTCTGGTCT-GAT
* * * *
35991287 CTTAGACAT-GGAATGAACTCCTTATGCCTAAGCCAACCCACAAAACG-GACGTGCAGGCGCTCA
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG-CGTGCGGGCGCTCA
* * *
35991350 GCCGTCCAGAGAGGCAGAACGCACAAGCCGAGGATTGACCCGGTCTCCCCCTGCGTGCTATCGAT
64 GCCGTCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTC-CCCCCTGCGTGCT-TCGAT
* *
35991415 CCTGCTGCTACAACCTTC-GTCTGGTCTGAT
127 CCTGCTACCACAACCTTCGGTCTGGTCTGAT
* * * * *
35991445 CTTAGATTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
35991510 CAGTCGA-AGAGGCATAATGCGTAAGCCGGGGATCGACCCGGTCCCTCTCTGCATGCTGCTGGTC
66 C-GTCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCC-CCCTGCGTGCTTC-GAT-
* * * * **
35991574 CCT-TTACCACAACCGTCGGTC-CGACTGGGG
127 CCTGCTACCACAACCTTCGGTCTGGTCT-GAT
* * * * *
35991604 CTTAGACAT-GGAATGAACTTCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTTAC
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
35991668 CCGGCCAGTGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTTTCGATCC
65 CCGTCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGC-TTCGATCC
*
35991733 TGCTACCGCAA-CTGTCGGT-TCGGTCTGAT
129 TGCTACCACAACCT-TCGGTCT-GGTCTGAT
* * * * * *
35991762 CTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCCATGAAACAAGCGTGCGGGCACTCAAC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * **
35991827 CGGTCAGAGAGGTCGATCGAAGAGGCAAAATGCGCATGCCGGGGAT-TAGCTTGGTCCCCCTCTG
66 C-GTC--------C-A--G-AGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCGGT-CCCC-C--
* * * **
35991891 CATGCTATCGATCCCGCTGTCGGTCCTGCTGCCACAACCCTCGGTCTGG-CTGGGG
113 C-TG----CG-T---GCT-TCGATCCTGCTACCACAACCTTCGGTCTGGTCT-GAT
* * * * * * *
35991946 CTTAGACAT-GGAATGAACTACGTATGCCTAAGCCAACCTAGGAAACAAGCCTGCGGGTGCTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *** * *
35992010 CCGAT-CGGAGAGGTAGAATGCGCAAGCCGAGGATCGGTTCGGTCCCCCCTACATGCTGTCGATC
65 CCG-TCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCT-TCGAT-
* * *
35992074 CTGTTGCTGGTCCTACTACCGTAACCCTCGATCCT-GTCT-AGT
127 C-----CT-G--CTACCA-C--AACCTTCGGT-CTGGTCTGA-T
* * * * **
35992116 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAGCGTGCCGGCGCTCAAT
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * ** * *** *
35992181 CGGCCGGAAAGGTAGAATGCGCAAGCTGGGGGCCGGCCTAATCCGCCCCTGTGTGCTATCGATCC
66 CGTCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCC-CCCCTGCGTGCT-TCGATCC
* ** **
35992246 TACTGGCGTAACCTTCGGTCTGGTCTGAT
129 TGCTACCACAACCTTCGGTCTGGTCTGAT
* * * * * *
35992275 CTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
35992340 CAGT-CGGAGAGGCATAATGCGCAAGCCGGGGATCGACTCGGACCCCCTCTGTGTGCTGCCGGTC
66 C-GTCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCC-CTGCGTGCT-TCGATC
* * * **
35992404 CCGCTGCCACAACCCTT-GGTCCGG-CTGGGG
128 CTGCTACCACAA-CCTTCGGTCTGGTCT-GAT
* * * *
35992434 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-
* * * * * * * * * *
35992498 GCGGT-CGGAGAGGTAGAATACGCATGTCGGGGATCG-CCCGATCCCCCTTGCGTGCTACCGATC
64 GCCGTCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCT-TCGATC
* ** * *
35992561 CTACTGTCGCAACCCTT-GGTCTGGTCCGAT
128 CTGCTACCACAA-CCTTCGGTCTGGTCTGAT
* * * *
35992591 CATAGACTAGGAATGAACTTCGTATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
35992618 TTAGACTGGG
Statistics
Matches: 1127, Mismatches: 269, Indels: 189
0.71 0.17 0.12
Matches are distributed among these distances:
156 1 0.00
157 66 0.06
158 303 0.27
159 450 0.40
160 18 0.02
161 1 0.00
162 3 0.00
164 2 0.00
165 3 0.00
166 1 0.00
167 6 0.01
168 2 0.00
169 2 0.00
170 100 0.09
171 69 0.06
172 5 0.00
173 1 0.00
175 2 0.00
176 1 0.00
180 2 0.00
181 1 0.00
183 4 0.00
184 81 0.07
185 3 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGTCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTTCGATCCTG
CTACCACAACCTTCGGTCTGGTCTGAT
Found at i:35991586 original size:317 final size:316
Alignment explanation
Indices: 35990969--35991819 Score: 907
Period size: 317 Copynumber: 2.7 Consensus size: 316
35990959 AACTTCGTAT
* * * * **
35990969 GCTTAGAC-TGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCA-TCG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTC-
** ** * * * *
35991032 AGTCGATCGGAGAGGCATAATGCACGAA-CC-ACGGATC-AGCCCGATCCCCCCTGCGTGCTGTC
64 ACCCGGCCAGAGAGGCAGAACGCAC-AAGCCGA-GGATCGA-CCCGATCCCCCCTGCGTGCTATC
* * *
35991094 GATCCTGCTACCGCAACCCTCGATCCGGT-TCGATCTTAGACTGGGAATGAACTCCATATGCATA
126 GATCCTGCTACCGCAACCTTCG-TCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCATA
* * * *
35991158 AGTCAACCTACGAAACAAGCGTGTGGGCGCTGAGCTAGCCGAAAAGGCATAATCTGGAAACCAGG
189 AGTCAACCCATGAAACAAGCGTGCGGGCGCTGAGCCAGCCGAAAAGGCATAATCTGGAAACCAGG
* ** * * **
35991223 GATCAGCTCGATCCCCTTCTGTGTGCTACCGGTCCCACTGCCACAACCCTCGGTCTGGTTGGG
254 GATCAGCCCGATCCCCTTCTGCATGCTACCGGTCCCACTACCACAACCCTCGGTCCGACTGGG
* *
35991286 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACAAAACG-GACGTGCAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAG-CGTGCAGGCACTCA
* * * *
35991350 GCCGTCCAGAGAGGCAGAACGCACAAGCCGAGGATTGACCCGGTCTCCCCCTGCGTGCTATCGAT
65 CCCGGCCAGAGAGGCAGAACGCACAAGCCGAGGATCGACCCGATC-CCCCCTGCGTGCTATCGAT
* ** *
35991415 CCTGCTGCTACAACCTTCGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCATAAGTCA
129 CCTGCTACCGCAACCTTCGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
* * * * * * *
35991480 ACCCATGAAACGAGCGTGCGGGTGCTGAGCCAGTCGAAGAGGCATAATGC-GTAAGCCGGGGATC
194 ACCCATGAAACAAGCGTGCGGGCGCTGAGCCAGCCGAAAAGGCATAAT-CTGGAAACCAGGGATC
* * * ** *
35991544 -GACCCGGT-CCCTCTCTGCATGCTGCTGGTCCCTTTACCACAACCGTCGGTCCGACTGGG
258 AG-CCCGATCCCCT-TCTGCATGCTACCGGTCCCACTACCACAACCCTCGGTCCGACTGGG
* * * * *
35991603 GCTTAGACATGGAATGAACTTCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTTAC
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAC
* * * * * *
35991668 CCGGCCAGTGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTTTCGATCC
66 CCGGCCAGAGAGGCAGAACGCACAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTATCGATCC
* *
35991733 TGCTACCGCAA-CTGTCGGT-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGAC
131 TGCTACCGCAACCT-TC-GTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTC
35991796 AACCCATGAAACAAGCGTGCGGGC
193 AACCCATGAAACAAGCGTGCGGGC
35991820 ACTCAACCGG
Statistics
Matches: 447, Mismatches: 72, Indels: 30
0.81 0.13 0.05
Matches are distributed among these distances:
315 2 0.00
316 38 0.09
317 366 0.82
318 41 0.09
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAC
CCGGCCAGAGAGGCAGAACGCACAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTATCGATCC
TGCTACCGCAACCTTCGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAAC
CCATGAAACAAGCGTGCGGGCGCTGAGCCAGCCGAAAAGGCATAATCTGGAAACCAGGGATCAGC
CCGATCCCCTTCTGCATGCTACCGGTCCCACTACCACAACCCTCGGTCCGACTGGG
Found at i:35992632 original size:26 final size:26
Alignment explanation
Indices: 35992593--35992643 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
35992583 GGTCCGATCA
*
35992593 TAGACTAGGAATGAACTTCGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCT
* *
35992619 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
35992644 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCT
Found at i:35993788 original size:26 final size:26
Alignment explanation
Indices: 35993748--35993799 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
35993738 CGATCCGATG
*
35993748 TTAGACTAGGAATGAACTCTGTATGC
1 TTAGACTAGGAATGAACTCAGTATGC
* *
35993774 TTAGACTGGGGATGAACTCAGTATGC
1 TTAGACTAGGAATGAACTCAGTATGC
35993800 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCAGTATGC
Found at i:35994893 original size:159 final size:155
Alignment explanation
Indices: 35994501--35994936 Score: 431
Period size: 159 Copynumber: 2.8 Consensus size: 155
35994491 ACTCCATATG
* ** * * * * *
35994501 CTTAGACTTGGAATGAACACTGTATGCCTAAGCCAACCCACAAAACAAGCGTACGGGCACTCAAC
1 CTTAGAC-TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * *
35994566 CGACCAGAGAGAAAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCCGTCAATCCT
65 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCCGCCAATCCC
* *
35994631 ACTGCCTCAACCCTCGGTCCGGTCCA
130 ACTGCCACAACCCTCGGTCCGCTCCA
* * * * * * * *
35994657 ATCTAGACTGCGAATGAACTCCCTATGCATAAGTCAATCCATGAAACGAGCGTGCAGGCGTTGAG
1 CT-TAGACTG-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * **
35994722 CTGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGATCCGATCCCCCTTTGCGTGCTGCCGGTC
64 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC-CTACGTGCCGCCAATC
* **
35994787 CCACTGCCACAACCCTCGGTTCGACTGGGA
128 CCACTGCCACAACCCTCGGTCCG-CT-CCA
* * *
35994817 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAGC
1 CTTAGAC-TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * **
35994882 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCATTACGTGC
65 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGC
35994937 TGTTGATCTT
Statistics
Matches: 220, Mismatches: 54, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
156 3 0.01
157 85 0.39
158 37 0.17
159 91 0.41
160 4 0.02
ACGTcount: A:0.25, C:0.32, G:0.26, T:0.17
Consensus pattern (155 bp):
CTTAGACTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCCGCCAATCCCA
CTGCCACAACCCTCGGTCCGCTCCA
Found at i:35995010 original size:26 final size:26
Alignment explanation
Indices: 35994974--35995052 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
35994964 TCGGTCCAAT
35994974 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35995000 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35995026 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35995052 C
1 C
35995053 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35995945 original size:26 final size:26
Alignment explanation
Indices: 35995902--35995961 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
35995892 CCTCGATCCG
35995902 ATCCG-AT-CTTAGACTGGGAATGAA
1 ATCCGTATGCTTAGACTGGGAATGAA
* *
35995926 ATTCGTATGCTTAGACTGGGGATGAA
1 ATCCGTATGCTTAGACTGGGAATGAA
*
35995952 CTCCGTATGC
1 ATCCGTATGC
35995962 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 4 0.13
25 2 0.07
26 24 0.80
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (26 bp):
ATCCGTATGCTTAGACTGGGAATGAA
Found at i:35997000 original size:26 final size:26
Alignment explanation
Indices: 35996962--35997014 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
35996952 GGCTTAAAAT
35996962 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
35996988 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
35997014 C
1 C
35997015 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:35997474 original size:158 final size:156
Alignment explanation
Indices: 35996988--35997487 Score: 418
Period size: 158 Copynumber: 3.2 Consensus size: 156
35996978 ACTCTGTATG
* *
35996988 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTCCAGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAAC
* * ** * * * * *
35997053 CAGCCAGAGAGGCAGAATGCACAAGTTGGGGATCGACTCGGT-CTCCCTGTGTACTGTCGATCCT
66 C-GGCTGAGAGGCAGAATGCGTAAGTCGGGGATCGCCT-GGTCCCCCCTGCGTGCTGTCGATCCT
* * * *
35997117 ACGGTCGCAACTCTCGATCCGATCCGAT
129 ACTGTCGCAACCCTCGGTCCGGTCCGAT
* * * * * * * *
35997145 CTTCGA-TTGGGAATGAACTCCGTATGCATAAGTCAACCCAGGAAACGAG-GTACAGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAA
* * * * * * * * *
35997208 TC-GCTCGAAGAGGCATAATGCGTAAGTCAGGGATCAGCCCGATCCTCCTCTACGTGCTGTGGGT
65 CCGGCT-G-AGAGGCAGAATGCGTAAGTCGGGGATC-GCCTGGTCC-CCCCTGCGTGCTGTCGAT
** ** * * * * **
35997272 CCCGCTACCACAACCCTCAGCCCGG-CAGGGG
126 CCTACTGTCGCAACCCTCGGTCCGGTC-CGAT
* * * * *
35997303 CTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGCGCGTGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAAC
* *
35997368 CGGCTGCAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTTGATCCT
66 CGGCTG-AGAGGCAGAATGCGTAAGTCGGGGATC-GCCTGGTCCCCCCTGCGTGCTGTCGATCCT
35997433 ACTGTCGCAACCCTCGGTCCGGTCCGAT
129 ACTGTCGCAACCCTCGGTCCGGTCCGAT
35997461 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
35997488 TTAGACTAGG
Statistics
Matches: 252, Mismatches: 79, Indels: 23
0.71 0.22 0.06
Matches are distributed among these distances:
154 1 0.00
155 1 0.00
156 36 0.14
157 46 0.18
158 121 0.48
159 44 0.17
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAAC
CGGCTGAGAGGCAGAATGCGTAAGTCGGGGATCGCCTGGTCCCCCCTGCGTGCTGTCGATCCTAC
TGTCGCAACCCTCGGTCCGGTCCGAT
Found at i:35997490 original size:26 final size:26
Alignment explanation
Indices: 35997461--35997513 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35997451 CCGGTCCGAT
35997461 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
35997487 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
35997513 C
1 C
35997514 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:35998534 original size:26 final size:26
Alignment explanation
Indices: 35998498--35998550 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35998488 CTGGCCTGAT
35998498 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
35998524 CTTAGACTGGGGTTGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
35998550 C
1 C
35998551 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:35998853 original size:354 final size:353
Alignment explanation
Indices: 35998182--35999322 Score: 1292
Period size: 354 Copynumber: 3.2 Consensus size: 353
35998172 CTGGTCTGAT
* * * * ** *
35998182 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * * ** * * * *
35998247 AGGCCGAAGAGGCATAATGCGCAACCCAGGGATCGGCTCGGTCCCCCTCTGTGTG-T-T-G---C
66 CGACCGGAGAGGCATAATGCGCATGCCGGGGATCAGCCCCGTCCCCCTCTGTGTGCTGTCGATCC
* * *
35998306 CG--ATC---CC-GCTGCCACAACCGTCAGTCC-AGCTGGGGCTTAGACATGGAATGAACTCCCT
131 CGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGA-CTGGGGCTTAGACATGGAATGAACTCCCT
* * ** *
35998364 ATACCTAAGCCAACCCACGAAACGGACGTGCGGGTGCTCAACCGGTCGGAGAGGCGGAATGCGTA
195 ATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAA-CGGTCGGAGAGGCGGAATGCGCA
* * * * * * * ** *
35998429 AG-TCGGGGATCAG-CTCGGTCCCCTTTGGGTGCT-GCAATCCTACTATTGCGACCCTCGGTCTG
259 AGCT-GAGGATCGGCCT-GGTCCCCCTTGCGTGCTAGCGATCCTACTGTCGTAACCCTCGTTC-G
* *
35998491 GCCTGATCTTAGACTGGGGATGAACTCCGTATG
321 GTCTGATCTTAGACTGGGAATGAACTCCGTATG
*
35998524 CTTAGACTGGGGTTGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
*
35998589 CGAACGGAGAGGCATAATGCGCATGCCGGGGATCAGCCCCGTCCCCCTCTGTGTGCTGTCGATCC
66 CGACCGGAGAGGCATAATGCGCATGCCGGGGATCAGCCCCGTCCCCCTCTGTGTGCTGTCGATCC
*
35998654 CGCTGTCGGTCCTGCTGTCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
131 CGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
*
35998719 TGCCTAAGCCAACCCATGAAACGGGCGTGC-GGCACTCAACGGGTCGGAGAGGCGGAATGCGCAA
196 TGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAAC-GGTCGGAGAGGCGGAATGCGCAA
*
35998783 GCTGAGGATCGGCCTGGTCCCCCTTGCGTGCTATCGATCCTACTGTCGTAACCCTCGATTCGGTC
260 GCTGAGGATCGGCCTGGTCCCCCTTGCGTGCTAGCGATCCTACTGTCGTAACCCTCG-TTCGGTC
35998848 TGATCTTAGACTGGGAATGAACTCCGTATG
324 TGATCTTAGACTGGGAATGAACTCCGTATG
* * *
35998878 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCATACGGGTGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGC-GG-G--C-G-
* *
35998943 CGGTCGGAGAGGCCGACCGGAGAGGCATAATGCGCATGCCGGGGATCAACCCCATCCCCCTCTGT
60 C--TC----A-GCCGACCGGAGAGGCATAATGCGCATGCCGGGGATCAGCCCCGTCCCCCTCTGT
* * ** *
35999008 GTGCTGCCGATCCTGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGTTGTGGCTTAGACATGG
118 GTGCTGTCGATCCCGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGG
* * * * *
35999073 AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGTCGGCCAGAGAG
183 AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCA-ACGGTCGGAGAG
* * * * * * * *
35999138 GCAGAATGCGCAAGC-CAGGGATCGGCCCGGCCCCCCCTACGTGCTAGCGATCCTGCTGACGTAA
247 GCGGAATGCGCAAGCTGA-GGATCGGCCTGGTCCCCCTTGCGTGCTAGCGATCCTACTGTCGTAA
* * * *
35999202 CCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCTTATG
311 CCC-TCGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
35999246 CTTAGACTGGGGATGAACTCCGTATGCTTAAGTCAACACACGAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
*
35999311 CGACCAGAGAGG
66 CGACCGGAGAGG
35999323 TAGGATGCGT
Statistics
Matches: 683, Mismatches: 81, Indels: 57
0.83 0.10 0.07
Matches are distributed among these distances:
342 102 0.15
343 1 0.00
344 1 0.00
345 1 0.00
348 3 0.00
350 2 0.00
352 1 0.00
353 54 0.08
354 177 0.26
355 18 0.03
356 2 0.00
358 1 0.00
359 1 0.00
360 2 0.00
362 3 0.00
363 1 0.00
364 1 0.00
366 2 0.00
367 153 0.22
368 154 0.23
369 3 0.00
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.20
Consensus pattern (353 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCATAATGCGCATGCCGGGGATCAGCCCCGTCCCCCTCTGTGTGCTGTCGATCC
CGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
TGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAACGGTCGGAGAGGCGGAATGCGCAAG
CTGAGGATCGGCCTGGTCCCCCTTGCGTGCTAGCGATCCTACTGTCGTAACCCTCGTTCGGTCTG
ATCTTAGACTGGGAATGAACTCCGTATG
Found at i:35998888 original size:26 final size:26
Alignment explanation
Indices: 35998852--35998904 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35998842 TCGGTCTGAT
35998852 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35998878 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35998904 C
1 C
35998905 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35999256 original size:26 final size:26
Alignment explanation
Indices: 35999220--35999275 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
35999210 CCGATCTGAT
*
35999220 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35999246 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35999272 CTTA
1 CTTA
35999276 AGTCAACACA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36006180 original size:26 final size:26
Alignment explanation
Indices: 36006151--36006203 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
36006141 CCGGTCTGAT
36006151 CTTAGACT-GGGAATGAAC-TCTGTATG
1 CTTAGACTAGGG-ATGAACTTC-GTATG
36006177 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGGATGAACTTCGTATG
36006203 C
1 C
36006204 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTTCGTATG
Found at i:36006530 original size:26 final size:26
Alignment explanation
Indices: 36006494--36006546 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36006484 TCGATCTGAT
36006494 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
36006520 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36006546 C
1 C
36006547 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36006912 original size:26 final size:26
Alignment explanation
Indices: 36006861--36006913 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
36006851 TTGATCCGAT
*
36006861 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
36006887 CTTAGACAT-GGAATGAACTTCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
36006913 C
1 C
36006914 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:36007392 original size:26 final size:26
Alignment explanation
Indices: 36007363--36007413 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
36007353 GATCCGATCA
36007363 TAGACTG-GGAATGAACTCCGTATGCT
1 TAGACTGAGG-ATGAACTCCGTATGCT
36007389 TAGACTGAGGATGAACTCCGTATGC
1 TAGACTGAGGATGAACTCCGTATGC
36007414 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGAGGATGAACTCCGTATGCT
Found at i:36008517 original size:159 final size:159
Alignment explanation
Indices: 36008108--36008538 Score: 413
Period size: 159 Copynumber: 2.7 Consensus size: 159
36008098 AACTCCGTAT
*
36008108 GCTTA-AACATGGAATGAAGT-CTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
1 GCTTAGAA-ATGGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * ** *
36008171 AACCGATCGGAGAGGCAGAATGCACAAGCTGGGGATCGACCCGATCCCCC-CTACGTGCTGTCGA
64 AGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTCCCAA
** * *
36008235 TCTTGCTACCGCAACCCTCGGTCCGGTCTGA
129 TCCCGCTACCACAACCCTCAGTCCGGTCTGA
* * ** * * * ** * *
36008266 TCTTAG-ACTGGGAATGAACTCAATATGCATAAGTCAACCCATGAAACGATTGTGCGGGCGTTGA
1 GCTTAGAAAT-GGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * **
36008330 GCCGACCGAAAAGACATAATGCGTAAGCCGGGGATTGGCTCGGTCCCCCTCTGTGTGCTCCCAAT
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTCCCAAT
* * *
36008395 CCCGCTACCATAACCCTCAGTCTGG-CTGGG
130 CCCGCTACCACAACCCTCAGTCCGGTCT-GA
* * *
36008425 GCTTAGAAATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCATGCAGGCGCTCAG
1 GCTTAGAAATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
36008490 CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCT
36008539 TGCGTGTTGT
Statistics
Matches: 207, Mismatches: 60, Indels: 11
0.74 0.22 0.04
Matches are distributed among these distances:
157 1 0.00
158 86 0.42
159 118 0.57
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (159 bp):
GCTTAGAAATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTCCCAATC
CCGCTACCACAACCCTCAGTCCGGTCTGA
Found at i:36009335 original size:26 final size:26
Alignment explanation
Indices: 36009306--36009355 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
36009296 GCTCAAAATG
36009306 TTAGAC-TGTGAATGAACTCCGTATGC
1 TTAGACATG-GAATGAACTCCGTATGC
*
36009332 TTAGACATGGAATGAACTCTGTAT
1 TTAGACATGGAATGAACTCCGTAT
36009356 CCCTAAGCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:36010003 original size:26 final size:26
Alignment explanation
Indices: 36009966--36010017 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36009956 TCTGATCTTT
36009966 GACTGGGAATGAACTCCGTATGCCTA
1 GACTGGGAATGAACTCCGTATGCCTA
36009992 GACTAGGG-ATGAACTCCGTATGCCTA
1 GACT-GGGAATGAACTCCGTATGCCTA
36010018 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (26 bp):
GACTGGGAATGAACTCCGTATGCCTA
Found at i:36010735 original size:26 final size:26
Alignment explanation
Indices: 36010697--36010749 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
36010687 GGCTCAAAAT
* *
36010697 CTTAGACTGGGAATGAATTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
*
36010723 CTTAGACAT-GGAAAGAACTCCGTATG
1 CTTAGAC-TGGGAAAGAACTCCATATG
36010749 C
1 C
36010750 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:36011253 original size:25 final size:25
Alignment explanation
Indices: 36011225--36011272 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
36011215 ACCAATCTTA
*
36011225 GACT-GGGAATGAACTCTGTATGCTT
1 GACTAGGG-ATGAACTCCGTATGCTT
*
36011250 GACTATGGATGAACTCCGTATGC
1 GACTAGGGATGAACTCCGTATGC
36011273 CTAAGTCAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 18 0.90
26 2 0.10
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (25 bp):
GACTAGGGATGAACTCCGTATGCTT
Found at i:36011751 original size:356 final size:354
Alignment explanation
Indices: 36011058--36011803 Score: 936
Period size: 356 Copynumber: 2.1 Consensus size: 354
36011048 CTCGGTTCGG
* * *
36011058 CTGGGGCTTAGACATGGAATGAACTGCCTATGCCCAAGCTAACCCACGAAACGGGCGTGCGGGCG
1 CTGGGGCTTAGACATGGAATGAACTGCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCG
* * * * *
36011123 CTCAGCCGACCAGAGAGGCAGACTGCGCAAGTCAGGGATCGACCCAGTCCCCTCTACGTGCTGCC
66 CTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCAGAGATCGACCCAGTCCCCTATACCTGCTGCC
*
36011188 GATCCTGCTACTGCAACCTCGGTTCGAACCAATCTTAGACTGGGAATGAACTCTGTATGCTTGAC
131 GATCCTGCTACTGCAACCTCGGTTCGAACCAATCTTAGACTGGGAATGAACTCCGTATGCTTGAC
* * * *
36011253 TATGGATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGTATGCGGGTGCTCAGCCTGCCAG
196 TATGGATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCTGCCAG
* * * * *
36011318 AGAGGCCCGTCGGAGAGGCATAATACGCAAGCCGGGGATCAGCTCGGTCCCCCTCTACGTGCTGC
261 AGAGGCCCGTCGAAGAGGCATAACACGCAAGCCAGGGATCAGCCCAGTCCCCCTCTACGTGCTGC
36011383 CGATCCCACTGCCACAACACTC-AGTCTGA
326 CGATCCCACTGCCACAACACTCGA-TCTGA
* * *
36011412 TTGGGGCTTAGACATGGAATGAACTGCCTATGCCTAAGCCAACCCATGAAACGGGCATGTGGGCG
1 CTGGGGCTTAGACATGGAATGAACTGCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCG
* * * * *
36011477 CTCAGCTGACC-GAAGAGGCAGAATGCGTAAGCCAGAGATTGGCCC-GATCCTCC-ATGCCTGCT
66 CTCAGCCGACCAG-AGAGGCAGAATGCGCAAGCCAGAGATCGACCCAG-TCC-CCTATACCTGCT
* * * **
36011539 GTCGATCCTGCTACTGCAACCCTCGGTTTGGACTGATCTTAGACTGGGAATGAACTCCGTATGCT
128 GCCGATCCTGCTACTGCAA-CCTCGGTTCGAACCAATCTTAGACTGGGAATGAACTCCGTATGCT
* *
36011604 TAGAGT-TGGGATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGT-CAGGGCGCTCAGC
192 T-GACTAT-GGATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCATGC-GGGCGCTCAGC
* * * * *
36011667 C-GATCGGAGAGG-CCGATCGAAGAGGCATAACGCGTAAGCTAGGGATC-GACCCAGTCCCCCTC
254 CTG-CCAGAGAGGCCCG-TCGAAGAGGCATAACACGCAAGCCAGGGATCAG-CCCAGTCCCCCTC
* * *
36011729 TACGTGCTGCC-AGTCTCACTGCCACATCCCTCGATCTGA
316 TACGTGCTGCCGA-TCCCACTGCCACAACACTCGATCTGA
*
36011768 CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
1 CTGGGGCTTAGACATGGAATGAACTGCCTATGCCTA
36011804 GGTTTGATAA
Statistics
Matches: 337, Mismatches: 43, Indels: 22
0.84 0.11 0.05
Matches are distributed among these distances:
353 2 0.01
354 122 0.36
355 51 0.15
356 161 0.48
357 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (354 bp):
CTGGGGCTTAGACATGGAATGAACTGCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCG
CTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCAGAGATCGACCCAGTCCCCTATACCTGCTGCC
GATCCTGCTACTGCAACCTCGGTTCGAACCAATCTTAGACTGGGAATGAACTCCGTATGCTTGAC
TATGGATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCTGCCAG
AGAGGCCCGTCGAAGAGGCATAACACGCAAGCCAGGGATCAGCCCAGTCCCCCTCTACGTGCTGC
CGATCCCACTGCCACAACACTCGATCTGA
Found at i:36012099 original size:26 final size:26
Alignment explanation
Indices: 36012048--36012100 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
36012038 GGCTCAAAAT
**
36012048 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
36012074 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
36012100 C
1 C
36012101 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:36012473 original size:159 final size:157
Alignment explanation
Indices: 36012073--36012522 Score: 388
Period size: 159 Copynumber: 2.9 Consensus size: 157
36012063 AACTCTGTAT
* *
36012073 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAA
* * * * * * * *
36012138 CAGGTCAGAGAGGCAG-ATGCGCAAGTCGAGGATCGACCTAGTCCCCCTGCGTGCTGTCGATCTT
66 CCGGCCGGAGAGGCAGAATGCACAAGTCGAGGATCGACCTAGTCCCCCTACATGCTGCCGATCCT
* * **
36012202 GCTGCCGTAACCCTCGGTCTGGTCTGA
131 GCTGCCATAACCCACGACCTGGTCTGA
* * * * * * * * *
36012229 TCTTAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCTACGAAACAAGCGTATGGGTGCTAA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCA
* * * * * * * *
36012293 ACCGGCCGAAAAGGCATAATGCACAAGTGGGGGATCGGCCTGGTCCCCCTCTACATGCTGCCGGT
65 ACCGGCCGGAGAGGCAGAATGCACAAGTCGAGGATCGACCTAGT-CCCC-CTACATGCTGCCGAT
* *
36012358 CCCT-CTGCCATAACCCACGACCTTGT-TGGG
128 -CCTGCTGCCATAACCCACGACCTGGTCT-GA
* * * *
36012388 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAA
* ** * * * * * *
36012453 CCGGCCGGAGAGGTAGAATGCGTAAGCCGGGGATCTG-CCCAGTCCCCCCTGCGTGCTACCGATC
66 CCGGCCGGAGAGGCAGAATGCACAAGTCGAGGATC-GACCTAGT-CCCCCTACATGCTGCCGATC
36012517 CTGCTG
129 CTGCTG
36012523 TCGCAACCCT
Statistics
Matches: 225, Mismatches: 60, Indels: 16
0.75 0.20 0.05
Matches are distributed among these distances:
155 1 0.00
156 62 0.28
157 24 0.11
158 19 0.08
159 115 0.51
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAA
CCGGCCGGAGAGGCAGAATGCACAAGTCGAGGATCGACCTAGTCCCCCTACATGCTGCCGATCCT
GCTGCCATAACCCACGACCTGGTCTGA
Found at i:36012776 original size:184 final size:182
Alignment explanation
Indices: 36012572--36013005 Score: 428
Period size: 171 Copynumber: 2.4 Consensus size: 182
36012562 AACTCCTTAT
* * *
36012572 GCTTAGAC-TGAGGATGAACTCCGTATACCAAAGTCAACCCACGAAACGAGCGTGCGGCCGCTCA
1 GCTTAGACATG-GAATGAACTCCGTATGCCAAAGTCAACCCATGAAACGAGCGTGCGG-CGCTCA
* * ** * * **
36012636 GTCGGCCGGAGAGGTCGATCGGAGAGGCATAATGCGCAAG-TCGGGGATCGGCTCGGTCCCCCTC
64 G-CGGTCGGAGAGGTCGATCGGAGAGGCAGAATGCGCAAGCT-GGAAATCGACCCCATCCCCCTC
* * *
36012700 TGTATGCTGCCGATCCCGCTGCCAGTCCTGCTGCCACAACCCTCGGTCTGGCTAGG
127 TGCATGCTGCCGATCCCGCTGCCAGTCCTGCTGCCACAACCCTCGATCCGGCTAGG
* * * *
36012756 GCTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCATGAAACGAGTGTGCGG-G--CA-C
1 GCTTAGACATGGAATGAACTCCGTATGCCAAAGTCAACCCATGAAACGAGCGTGCGGCGCTCAGC
* * * * *
36012817 --TC--A-A--CCGGTCGGAGAGGCAGATTGCGCAAGCTGGAAATCGACCCCATCCCCCTTTGCG
66 GGTCGGAGAGGTCGATCGGAGAGGCAGAATGCGCAAGCTGGAAATCGACCCCATCCCCCTCTGCA
** * * *
36012875 TGCTGCCGATCCCGCTGCTGGTCTTGTTGCCACAACCCTCGATCCGGCTGGG
131 TGCTGCCGATCCCGCTGCCAGTCCTGCTGCCACAACCCTCGATCCGGCTAGG
* * *
36012927 GCTTAAACATGGAATGAACTCCGTATGCCTAAGGT-AACCCATGAAACGAGCGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCC-AAAGTCAACCCATGAAACGAGCGTGC-GGCGCTCA
36012991 GCCGGTCGGAGAGGT
64 G-CGGTCGGAGAGGT
36013006 AGAATGTGCA
Statistics
Matches: 198, Mismatches: 36, Indels: 32
0.74 0.14 0.12
Matches are distributed among these distances:
171 129 0.65
172 5 0.03
173 2 0.01
174 1 0.01
175 2 0.01
176 1 0.01
177 1 0.01
178 1 0.01
179 2 0.01
180 2 0.01
181 1 0.01
182 2 0.01
184 47 0.24
185 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (182 bp):
GCTTAGACATGGAATGAACTCCGTATGCCAAAGTCAACCCATGAAACGAGCGTGCGGCGCTCAGC
GGTCGGAGAGGTCGATCGGAGAGGCAGAATGCGCAAGCTGGAAATCGACCCCATCCCCCTCTGCA
TGCTGCCGATCCCGCTGCCAGTCCTGCTGCCACAACCCTCGATCCGGCTAGG
Found at i:36013030 original size:171 final size:171
Alignment explanation
Indices: 36012654--36013048 Score: 506
Period size: 171 Copynumber: 2.3 Consensus size: 171
36012644 GAGAGGTCGA
* * * * **
36012654 TCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCTCTGTATGCTGCCGATCCCGC
1 TCGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGATCCCGC
* * * *
36012719 TGCCAGTCCTGCTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCGTATGG
66 TGCCAGTCCTGCTGCCACAACCCTCGATCCGGCTAGGGCTTAAACATGGAATGAACTCCGTATGC
* *
36012784 CTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAACCGG
131 CTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAACCGG
* * * ** *
36012825 TCGGAGAGGCAGATTGCGCAAG-CTGGAAATCGACCCCATCCCCCTTTGCGTGCTGCCGATCCCG
1 TCGGAGAGGCAGAATGCGCAAGTCAGG-GATCGACCCGGTCCCCCTCTGCGTGCTGCCGATCCCG
** * * *
36012889 CTGCTGGTCTTGTTGCCACAACCCTCGATCCGGCTGGGGCTTAAACATGGAATGAACTCCGTATG
65 CTGCCAGTCCTGCTGCCACAACCCTCGATCCGGCTAGGGCTTAAACATGGAATGAACTCCGTATG
** * *
36012954 CCTAAGGTAACCCATGAAACGAGCGTACGGGCGCTCAGCCGG
130 CCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAACCGG
* *
36012996 TCGGAGAGGTAGAATGTGCAAGTCAGGGATCGACCCGGTCCCCC-CTGCGTGCT
1 TCGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCCCCCTCTGCGTGCT
36013049 ATCAATCTTG
Statistics
Matches: 188, Mismatches: 34, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
170 11 0.06
171 174 0.93
172 3 0.02
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (171 bp):
TCGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGATCCCGC
TGCCAGTCCTGCTGCCACAACCCTCGATCCGGCTAGGGCTTAAACATGGAATGAACTCCGTATGC
CTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAACCGG
Found at i:36013444 original size:26 final size:26
Alignment explanation
Indices: 36013403--36013455 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36013393 ACGGTCCAAT
36013403 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
36013429 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
36013455 C
1 C
36013456 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:36013874 original size:26 final size:26
Alignment explanation
Indices: 36013822--36013874 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
36013812 CCGATCCAAT
* *
36013822 CTTAGATTGTGAATGAACTCTGCATG
1 CTTAGATTGGGAATGAACTCCGCATG
* *
36013848 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGCATG
36013874 C
1 C
36013875 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGCATG
Found at i:36014584 original size:26 final size:26
Alignment explanation
Indices: 36014546--36014598 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36014536 GGCTCAAAAT
*
36014546 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36014572 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
36014598 C
1 C
36014599 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36014986 original size:159 final size:157
Alignment explanation
Indices: 36014571--36015070 Score: 397
Period size: 158 Copynumber: 3.2 Consensus size: 157
36014561 AACTCTGTAT
** * *
36014571 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGG-GTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACAAAAGAAACG-GGCGTGCGGGCGCTCA
* * * * * * * * *
36014635 ACCGATCGGAAAGGTAGAATCCGCAAGCCAGGGA-CTGACCCAATCCCCCT-TGCGTGCTGCCGA
65 ACCGATCGGAGAGGCAAAATACGTAAGCCAAGGATCAG-CCCGATCCCCCTCTGCGTGCTGTCGA
* * *
36014698 TCCTGCTGCTGAAACCCTCGATCCGGTCTGA
129 TCCTACTGC-CAAACCCTCGATCC-GACTGA
* * * * * *
36014729 TCTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCCAAAAG--ACGAGCGTGCGAGCG-T
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA--CAAAAGAAACGGGCGTGCGGGCGCT
* ** * *** * * * *
36014790 CGAACCGACCAAAGAGGCATAACGTGTGAGTCGAGGATCAGCCCGGTCCCCCTCTGCGTGCTGTC
63 C-AACCGATCGGAGAGGCAAAATACGTAAGCCAAGGATCAGCCCGATCCCCCTCTGCGTGCTGTC
* * *
36014855 GGTCCCACTGCCACAACCCTCGATCCGACTGGG
127 GATCCTACTGCCA-AACCCTCGATCCGACT-GA
*
36014888 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACAAAAGAAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACAAAAGAAACGGGCGTGCGGGCGCTCAA
* * * *
36014953 CCGGTCGGAGAGGCAAAATACGTAAGCCAAGGATCGGCCCGATTCCCC-CTGTGTGCTGTCGATC
66 CCGATCGGAGAGGCAAAATACGTAAGCCAAGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATC
** * *
36015017 CTACTGTCGTAACCCTCGGTCCGATCTAA
131 CTACTG-CCAAACCCTCGATCCGA-CTGA
* *
36015046 TCTTAGAC-TGGGAATGAACTTCGTA
1 GCTTAGACAT-GGAATGAACTCCGTA
36015071 CGCTTAGACT
Statistics
Matches: 260, Mismatches: 66, Indels: 32
0.73 0.18 0.09
Matches are distributed among these distances:
157 11 0.04
158 128 0.49
159 115 0.44
160 6 0.02
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACAAAAGAAACGGGCGTGCGGGCGCTCAA
CCGATCGGAGAGGCAAAATACGTAAGCCAAGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATC
CTACTGCCAAACCCTCGATCCGACTGA
Found at i:36015443 original size:26 final size:26
Alignment explanation
Indices: 36015402--36015454 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36015392 CCGATCCAAT
*
36015402 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
36015428 CTTAGACTGGCG-ATGAACTCAGTATG
1 CTTAGACTGG-GAATGAACTCAGTATG
36015454 C
1 C
36015455 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:36015515 original size:355 final size:355
Alignment explanation
Indices: 36014854--36015518 Score: 901
Period size: 355 Copynumber: 1.9 Consensus size: 355
36014844 TGCGTGCTGT
*
36014854 CGGTCCCACTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
1 CGGTCCCACTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTA
* * *
36014919 AGCCAACAAAAGAAACGGGCGTGCGGGCGCTCAACCGGTCGGAGAGGCAAAATACGTAAGCCAAG
66 AGCCAACAAAAGAAACGAGCGTGCGGGCGCTCAACCGCTCGGAGAGGCAAAATACGCAAGCCAAG
* * * * * * *
36014984 GATCGGCCCGATTCCCCCTGTGTGCTGTCGATCCTACTGTCGTAACCCTCGGTCCGATCTAATCT
131 GATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGATCCGATCCAATCT
* *
36015049 TAGACTGGGAATGAACTTCGTACGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCAT
196 TAGACTGGGAATGAACTTCGTACGCTTAGACTGGCGATGAACTCCATATGCCTAAGTCAACCCAC
* ** *
36015114 GAAACGAGCGTGCAGGCAGTCAGCCGGCCAGAGAGGCATAATGCGTAAGCTGGGGATCAGCCCGA
261 GAAACGAGCGTACAGGCAGTCAGCCCACCAGAGAGGCAGAATGCGTAAGCTGGGGATCAGCCCGA
36015179 TCCCCCTCTGCATGCTGTCGATCCCGCTAC
326 TCCCCCTCTGCATGCTGTCGATCCCGCTAC
* * * * * *
36015209 CGGTCCTACTGCCACAACCTTTGGTCCGACTTGGGCTTAGACATGGAGTGAACTCCATATGCCTA
1 CGGTCCCACTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTA
** * * * * * * *
36015274 AGCCAACCCACGAATCGAGCGTGCGGGTGCTCATCCGACT-GGAGAGGCAGAATACGCATGCCAG
66 AGCCAACAAAAGAAACGAGCGTGCGGGCGCTCAACCG-CTCGGAGAGGCAAAATACGCAAGCCAA
* *
36015338 GGATCGACCCGATCCCCCCTGCGTGCTGTCGATGCTGCTGCCGCAACCCTCGATCCGATCCAATC
130 GGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGATCCGATCCAATC
*
36015403 TTAGACTGGGAATGAAC-TCTGTATGCTTAGACTGGCGATGAACT-CAGTATGCCTAAGTCAACC
195 TTAGACTGGGAATGAACTTC-GTACGCTTAGACTGGCGATGAACTCCA-TATGCCTAAGTCAACC
* *
36015466 CACCG-AATGAGCGTAC-GG-ACGCTCAGCCCACCAGAGAGGCAGGATGCGTAAGC
258 CA-CGAAACGAGCGTACAGGCA-G-TCAGCCCACCAGAGAGGCAGAATGCGTAAGC
36015519 CACGGATCGA
Statistics
Matches: 267, Mismatches: 37, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
353 1 0.00
354 7 0.03
355 257 0.96
356 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (355 bp):
CGGTCCCACTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTA
AGCCAACAAAAGAAACGAGCGTGCGGGCGCTCAACCGCTCGGAGAGGCAAAATACGCAAGCCAAG
GATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGATCCGATCCAATCT
TAGACTGGGAATGAACTTCGTACGCTTAGACTGGCGATGAACTCCATATGCCTAAGTCAACCCAC
GAAACGAGCGTACAGGCAGTCAGCCCACCAGAGAGGCAGAATGCGTAAGCTGGGGATCAGCCCGA
TCCCCCTCTGCATGCTGTCGATCCCGCTAC
Found at i:36016173 original size:26 final size:26
Alignment explanation
Indices: 36016135--36016213 Score: 142
Period size: 26 Copynumber: 3.0 Consensus size: 26
36016125 GGCTCAAAAT
36016135 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
36016161 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
36016187 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
36016213 C
1 C
36016214 CTAAGCCAAC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 51 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:36016530 original size:159 final size:159
Alignment explanation
Indices: 36016188--36016627 Score: 423
Period size: 159 Copynumber: 2.8 Consensus size: 159
36016178 CTCCGTATGC
* **
36016188 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
* * * * * *
36016253 TGCCAGAGAGGCAGAATGCATAAGTCTAGGATCGACCGGTCGCCTCCTGCGTGCTGTTGATCCTG
66 TGCCAGAGAGGCAGAATGCATAAGCCGAGGATCGACCGATCCCCTCCTGCATGCTGTCGATCCTG
* *
36016318 CTACTACAACCCTCAGTCCGGTCTGATCT
131 CTACCACAACCCTCAGTCCGGTCTGAGCT
* * * *
36016347 TT-GAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGTGGGCACTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * *
36016410 C-GACC-GAAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGATCCCC-CTCTGCATGCTGTCGG
65 CTG-CCAG-AGAGGCAGAATGCATAAGCCGAGGATC-GACCGATCCCCTC-CTGCATGCTGTCGA
*
36016472 TCCTGCTACCACAACCCTC-GCTCCGG-CTGGGCT
126 TCCTGCTACCACAACCCTCAG-TCCGGTCTGAGCT
* * * * * **
36016505 TTAGACATGGAATAAACTCCCTATGCCTAACCCAACCCACGAAACGAACTTGCGGGTGCTCAG-C
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
* * * * * * *
36016569 TGATCGGAGAGGCAGAATACATAAGTCG-GGATGGACCCGATCCCC-CATGCGTGCTGTCG
66 TG-CCAGAGAGGCAGAATGCATAAGCCGAGGATCGA-CCGATCCCCTCCTGCATGCTGTCG
36016628 CAACCCTCAG
Statistics
Matches: 229, Mismatches: 41, Indels: 24
0.78 0.14 0.08
Matches are distributed among these distances:
157 15 0.07
158 101 0.44
159 111 0.48
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (159 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
TGCCAGAGAGGCAGAATGCATAAGCCGAGGATCGACCGATCCCCTCCTGCATGCTGTCGATCCTG
CTACCACAACCCTCAGTCCGGTCTGAGCT
Found at i:36017032 original size:26 final size:26
Alignment explanation
Indices: 36017003--36017055 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36016993 CCAGTCCGAT
36017003 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
36017029 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
36017055 C
1 C
36017056 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:36018120 original size:159 final size:157
Alignment explanation
Indices: 36017759--36018316 Score: 566
Period size: 158 Copynumber: 3.5 Consensus size: 157
36017749 GGTTAGATAT
* * *
36017759 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGATCGAAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCA-TTAGCCGACCGAAG
* * *** * * * **
36017824 AGGCAAAATGCACAAGTCGGGGATTGACCCGGTCCCCCCCATGTGCTGCCGATCTTACTGTTGCA
65 AGGCAAAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCATGCTGCCGCA
* * * * *
36017889 ACCCTCGATTCGGTCTGATCTTAGACTG
130 ACCCTCGGTCCGGCCGGAGCTTAGACTG
* * * *
36017917 GGAATGAACTTCGTATGCATAAGTCAACCCAGGAAACGAGCGTGCGTGCATTGAGCCGACCGAAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCATT-AGCCGACCGAAG
* * * ** * *
36017982 AGGCATAATGCACAAGCCGGGGATCGTCCCGGTCCCCCTCTGCGTGCTACTGATCCCGCTACCAC
65 AGGCAAAATGCACAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTACCGATCATGCTGCCGC
*
36018047 AACCCTCGGTCCGGCCGGGGCTTAGACAT-
129 AACCCTCGGTCCGGCCGGAGCTTAGAC-TG
* * * * * *
36018076 GGAATGAACTCCCTATGCCTAAGTCAACCCATGAATCGAGCGTGCGGGCACTTAGCCCACTGGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCA-TTAGCCGACCGAAG
* * * **
36018141 GGGTAAAATGCGCAAGCCGGGGATCGACCTAGTCCCCCCTGCGTGCTACCGATCATGCTGCCGCA
65 AGGCAAAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCATGCTGCCGCA
*
36018206 ACCCTCGGTCTGGTCC-GATG-TTAGACTG
130 ACCCTCGGTCCGG-CCGGA-GCTTAGACTG
* * * * *
36018234 GGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAGCCGACC-AGA
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-ATTAGCCGACCGA-A
* *
36018298 GAGGCAAGATGCGCAAGCC
64 GAGGCAAAATGCACAAGCC
36018317 AGAGATTGAA
Statistics
Matches: 326, Mismatches: 65, Indels: 18
0.80 0.16 0.04
Matches are distributed among these distances:
157 2 0.01
158 199 0.61
159 122 0.37
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCATTAGCCGACCGAAGA
GGCAAAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCATGCTGCCGCAA
CCCTCGGTCCGGCCGGAGCTTAGACTG
Found at i:36018950 original size:26 final size:26
Alignment explanation
Indices: 36018921--36018973 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36018911 CACTCAAAAT
36018921 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACGT-GGAATGAACTCCATATG
*
36018947 CTTAGACGTGGAATGAACTCCGTATG
1 CTTAGACGTGGAATGAACTCCATATG
36018973 C
1 C
36018974 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACGTGGAATGAACTCCATATG
Found at i:36019293 original size:26 final size:26
Alignment explanation
Indices: 36019264--36019316 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36019254 CCGGTCTGAT
36019264 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
36019290 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
36019316 C
1 C
36019317 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:36020495 original size:26 final size:26
Alignment explanation
Indices: 36020466--36020517 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
36020456 CGGACCAATG
* *
36020466 TTAGATTGGGAATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
36020492 TTAGACTGAGAATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
36020518 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGC
Found at i:36020866 original size:26 final size:26
Alignment explanation
Indices: 36020830--36020882 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36020820 CCGGTCTGAT
36020830 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
36020856 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
36020882 C
1 C
36020883 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:36021931 original size:159 final size:158
Alignment explanation
Indices: 36021579--36022022 Score: 439
Period size: 159 Copynumber: 2.8 Consensus size: 158
36021569 TCTGTATGCC
* * **
36021579 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGTCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCACCCG
* * **
36021644 TTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGAGCCGATCCCCCCTGCGTGCTATCGATCTTGC
66 GTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGAGCCGATCCCCCCTGCGTGCTATCGATCCCGC
* * *
36021709 TGCCGCAACCCTCGATCCGATCCAATCT
131 TGCCACAACCCTCGATCCAATCCAAGCT
* * * * *
36021737 TAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGCGGGCATTGACCC
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCACCC
* * * * * *
36021801 GGTCGAAGAGGCATAATGCGCAAGCTGGGGATTG-GTCC-AGTCCCCCTTTGCGTGCTATCGGTC
65 GGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGAG-CCGA-TCCCCC-CTGCGTGCTATCGATC
* * ***
36021864 CCGTTTCCACAACCCTCGATCCAA-CTGGGGCT
127 CCGCTGCCACAACCCTCGATCCAATC-CAAGCT
* * * * * ***
36021896 TAGACATGGAATGATCTCCCTATGCCTAAGCCAACCCAAGAAACGGGCGTGCGGGCGCTCAATTG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCACCCG
* * * * *
36021961 G-CTAGAGAGGCAGAATGCGCAAGCCGAAGATCAACCCGATCCCCCCTACGTGCTATCGATCC
66 GTCGA-AGAGGCAGAATGCGCAAGCCGAGGATCGAGCCGATCCCCCCTGCGTGCTATCGATCC
36022023 TACTACCGTA
Statistics
Matches: 226, Mismatches: 51, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 106 0.47
159 115 0.51
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCACCCG
GTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGAGCCGATCCCCCCTGCGTGCTATCGATCCCGC
TGCCACAACCCTCGATCCAATCCAAGCT
Found at i:36022088 original size:26 final size:26
Alignment explanation
Indices: 36022052--36022104 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36022042 TCGATCAAAT
*
36022052 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
* *
36022078 CTTAGACTGGGGATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
36022104 C
1 C
36022105 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:36022456 original size:26 final size:26
Alignment explanation
Indices: 36022420--36022472 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36022410 TTGGTCCAAT
36022420 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
36022446 CTTAGACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
36022472 C
1 C
36022473 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:36024041 original size:26 final size:26
Alignment explanation
Indices: 36024012--36024064 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
36024002 CCGATCTGAT
36024012 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
36024038 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36024064 C
1 C
36024065 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36024055 original size:354 final size:342
Alignment explanation
Indices: 36023342--36024075 Score: 802
Period size: 354 Copynumber: 2.1 Consensus size: 342
36023332 CTGATCTGAT
* * * *
36023342 CTTAGATTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGCATTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCATGCGGGCATTGAGC
* * * *
36023407 AGGCCGAAGAGGCATAATGCGCAAGTCGGGGATAAGCTCGGTCCCCCTCTACGTGCTGCCAGTCC
66 AGGCCGAAGAGGCATAATGCACAAGTCGGGGATAAGCCCGGTCCCCCTCTACGTGCTACCACTCC
* *
36023472 TGCTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAA
131 TGCTGCAACAACCCTCGATCCAGCTAGGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAA
* * * * * * ** * *
36023537 CCCGTAAAACGGGTGTACGGGTGCTCAGCTGGTCGGAGAGGCAAAATACGCAAGCCAGGGATCAG
196 CCCATAAAACGAGCGTACGGGCGCTCAGCTAGCCAAAGAGGCAAAATACACAAACCAGGGATCAG
* * * *
36023602 CCCGATCCCCCCTGCATGCTGTCGATCCTGCTGTCGCAACTCTCGATCTGGTCTGATCTTAGACT
261 CCCGATCCCCCCT-CATGCTATCGATCCTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACT
**
36023667 GGGAATGAACTCTTTATG
325 GGGAATGAACTCCGTATG
** *
36023685 C-TAGACTGAAGATGAACTCCGTATGCCTAAGTTAACCAACGAAACGAGCGTATG-GGCGC-TT-
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGC--ATGCGG-GCATTG
* *
36023746 AGCCGGCCGAAGAGGCATAATGCACAAGTCGGGGATCAGCCCGGTCCCCCTCTACGTGCTACCGA
63 AGCAGGCCGAAGAGGCATAATGCACAAGTCGGGGATAAGCCCGGTCCCCCTCTACGTGCTACC-A
* * *
36023811 TCTCGCTGTTGGTCTTGCAACTGGAACCCTCGATTCAGCTAGGGCTTAGACATGGAATGAACTCT
127 -CTC-C---T-G-C-TGCAAC---AACCCTCGATCCAGCTAGGGCTTAGACATGAAATGAACTCC
* * * * * * *
36023876 GTATGCCTAAGCCAACCCATGAAATGAGCGTATGGGCGCTCAG-TCAGCCAAAGATGCAGAATGC
181 CTATGCCTAAGCCAACCCATAAAACGAGCGTACGGGCGCTCAGCT-AGCCAAAGAGGCAAAATAC
* * * * *
36023940 ATAAACCGGGGATCGGCTCGGT-CCCCCT-ATGTACTATCGATCCTGCTG-CTGCAACCCTCTG-
245 ACAAACCAGGGATCAGCCCGATCCCCCCTCATG--CTATCGATCCTGCTGTC-GCAACCCTC-GA
36024001 TCCGATCTGATCTTAGACTGGGAATGAACTCCGTATG
306 TCCGATCTGATCTTAGACTGGGAATGAACTCCGTATG
36024038 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
36024076 CACAAAATGA
Statistics
Matches: 321, Mismatches: 49, Indels: 31
0.80 0.12 0.08
Matches are distributed among these distances:
342 99 0.31
343 6 0.02
344 7 0.02
345 1 0.00
348 1 0.00
349 1 0.00
350 1 0.00
351 8 0.02
352 1 0.00
353 63 0.20
354 133 0.41
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.22
Consensus pattern (342 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCATGCGGGCATTGAGC
AGGCCGAAGAGGCATAATGCACAAGTCGGGGATAAGCCCGGTCCCCCTCTACGTGCTACCACTCC
TGCTGCAACAACCCTCGATCCAGCTAGGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAA
CCCATAAAACGAGCGTACGGGCGCTCAGCTAGCCAAAGAGGCAAAATACACAAACCAGGGATCAG
CCCGATCCCCCCTCATGCTATCGATCCTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTG
GGAATGAACTCCGTATG
Found at i:36024651 original size:26 final size:26
Alignment explanation
Indices: 36024615--36024667 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36024605 CTAATCTGAT
* *
36024615 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
36024641 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
36024667 C
1 C
36024668 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:36026002 original size:722 final size:716
Alignment explanation
Indices: 36024613--36026845 Score: 3169
Period size: 722 Copynumber: 3.1 Consensus size: 716
36024603 GTCTAATCTG
* * * *
36024613 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * *
36024678 CCACAAAATGAGCGTGCGGGCAAC-CAGCCAACCAAAGAGGCAGGATGTGCAAGCTGGGGATCGA
66 CCACAAAACGAGCGTGCGGGC-GCTCAGCCGACCAAAGAGGCAGGATGTGCAAGC-GGGGATCGA
* * * ** * **
36024742 ACGGGTGGTAGGTGGGTTCAAGCATATCTTCATATTTCTGCCAAGCCAATGTGATATTTATATCT
129 ACGGGTGGTAAGTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCT
* *
36024807 TGTAAATTCATACAATGGTTCCCTAAGCCTTCATGTGAAGTTTTGTGGCAAGACGACCCGTTTTC
194 TGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTC
* * ** *
36024872 TATTTTTCACAATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTAGAAAGAGTT
259 TATTTTTTACAATTTTTAAAACTTTTT-ACGTTCGAGATTTTTTAAAA-TTTTTTAGAAAGAGTT
*
36024937 TTGTCCCTAAATTTGGTAGAGGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCT
322 TTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAAATTCAGCT
*
36025002 AAAAACTCGAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTCA
386 AAAAACTCGAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
36025067 ATGGCTACTGGGAGCAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGT
451 ATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
36025131 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCA
516 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCA
* * * * *
36025196 CACCCCCCGTCCCCCCAATCGTCGGAACCCCCAATGTCGCTAGTTAGGCTCTTTGGCGATGCTCC
581 CA-CCCCCGGCCCCCCAATCATCGGAACCCCCAATGCCGC-GGTTAGGCTCTCTGGCGATGCTCC
* *
36025261 GGCGATGGTGCCTCGGGCGAAAAAAAATGTGGCACCAGCACATGCCGAGCCCAGCATGTGCACCG
644 GACGATGGTGCCCCGGGCG-AAAAAAATGTGGCACCAGCACATGCCGAGCCCAGCATGTGCACCG
36025326 TGGCTCAAA
708 TGGCTCAAA
* * *
36025335 ATCTTAGACTGGGAATGAACTCCATATGCTTAGGCAT-GGAATGAACTCCCTATGCCTAAGTCAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
36025399 CCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGAGGCAGGATGTGCAAGTCGGGGATCGA
65 CCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCAAAGAGGCAGGATGTGCAAG-CGGGGATCGA
* * *
36025464 ACGGGTGGTAAGTGGGTTCAAGCACATCTTCATATATCTGCCATGTCAATGCCATTTTTCTGGCT
129 ACGGGTGGTAAGTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCT
* * * *
36025529 CGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGATCTGTTTTC
194 TGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTC
* *
36025594 TATTTTTTACAATTTTTAAAACTTTTTACAGTTCAAGATTTTTTAAAATTGTTTTAGACAGAGTT
259 TATTTTTTACAATTTTTAAAACTTTTTAC-GTTCGAGATTTTTTAAAATT-TTTTAGAAAGAGTT
36025659 TTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTA
322 TTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTA
* * *
36025724 AAAATTCGAAATGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCTCATTTCAGACACTTTAA
387 AAAACTCGAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
36025789 TGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-CTGAGGT
452 TGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-GAGGT
**
36025853 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA
516 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCA
** * *
36025918 CACCCCCTGGCCCCGTAATCACCAGAACCCCCAATGCCGTCGGTTAGGCTCTCTGGCGATGCTCC
581 CACCCCC-GGCCCCCCAATCATCGGAACCCCCAATGCCG-CGGTTAGGCTCTCTGGCGATGCTCC
* * * * * * * *
36025983 GACGATGGTGCCCCGGGCG-AAACATTGCTGTCGATCA-TAC-TGCC--G--CAACCT-T-CGAT
644 GACGATGGTGCCCCGGGCGAAAAAAATG-TGGC-ACCAGCACATGCCGAGCCCAGCATGTGC-AC
**
36026039 C-TGG-TC-CG
706 CGTGGCTCAAA
* *
36026047 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* **
36026112 CCACAAAACGAGCGTGCGGGCGCTCAGCCGACCAAAGAGGTAGGATGCACAAGCCGGGGATCGAA
66 CCACAAAACGAGCGTGCGGGCGCTCAGCCGACCAAAGAGGCAGGATGTGCAAG-CGGGGATCGAA
*
36026177 CGGGTGGTAAGTGGGTTCAAGAACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
130 CGGGTGGTAAGTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
*
36026242 GTAAATTCATACAATGGTCCCCTAAGCCTCCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCT
195 GTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCT
* *
36026307 A-TTTTT-CAAGATTTTAAAAATTTTTACGATTCGAGATTTTTTAAAATTTTTGTAGAAAGAGTT
260 ATTTTTTACAA-TTTTTAAAACTTTTTACG-TTCGAGATTTTTTAAAATTTTT-TAGAAAGAGTT
** * * * * *
36026370 TCATTCCCAAATTT-GTAAGAGGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCACCC
322 TTGTCCCCAAATTTGGT-AGAGGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCT
* * * *
36026434 AAAAACTCGAAGTGGAGAAGATTTTGTGCCCGTTTCAAAAAAGTATCCCCATTTCAAACACTTTA
386 AAAAACTCGAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
36026499 ATGGCTATTGGCAGCAGACCTATAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGT
451 ATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
36026564 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATTGCACATCAAGTGCGCA
516 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCA
* * *
36026629 CACCCCCGGCCCCCCAATCATCGGAACCCCCATTACCGCCGGTTAGGCTCTCCGGCGATGCTCC-
581 CACCCCCGGCCCCCCAATCATCGGAACCCCCAATGCCG-CGGTTAGGCTCTCTGGCGATGCTCCG
*
36026693 AGCGATGGTGCCCCGGGCGAAAAAAATGCGGCACCAGCACATGCCGGAGCCCAGCATGTGCACCG
645 A-CGATGGTGCCCCGGGCGAAAAAAATGTGGCACCAGCACATGCC-GAGCCCAGCATGTGCACCG
36026758 TGGCTCAAA
708 TGGCTCAAA
*
36026767 ATCTTAGATTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CTA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTC-A
**
36026830 ACCCATGAAACGAGCG
64 ACCCACAAAACGAGCG
36026846 CGTAGGCGCT
Statistics
Matches: 1340, Mismatches: 137, Indels: 70
0.87 0.09 0.05
Matches are distributed among these distances:
709 4 0.00
710 79 0.06
711 299 0.22
712 239 0.18
713 2 0.00
714 5 0.00
715 3 0.00
716 8 0.01
717 3 0.00
718 5 0.00
719 3 0.00
720 80 0.06
721 134 0.10
722 473 0.35
723 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (716 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACAAAACGAGCGTGCGGGCGCTCAGCCGACCAAAGAGGCAGGATGTGCAAGCGGGGATCGAAC
GGGTGGTAAGTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCTA
TTTTTTACAATTTTTAAAACTTTTTACGTTCGAGATTTTTTAAAATTTTTTAGAAAGAGTTTTGT
CCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAA
CTCGAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
TACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCC
CCGGCCCCCCAATCATCGGAACCCCCAATGCCGCGGTTAGGCTCTCTGGCGATGCTCCGACGATG
GTGCCCCGGGCGAAAAAAATGTGGCACCAGCACATGCCGAGCCCAGCATGTGCACCGTGGCTCAA
A
Found at i:36026078 original size:26 final size:26
Alignment explanation
Indices: 36026049--36026101 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36026039 CTGGTCCGAT
*
36026049 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
36026075 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36026101 C
1 C
36026102 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36027325 original size:27 final size:26
Alignment explanation
Indices: 36027272--36027325 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36027262 GTCTGATCTT
*
36027272 AGACTGGGAATGAACTCCGTATGCTA
1 AGACTGGGAATGAACTCCGTATCCTA
*
36027298 AGACTGGGGATGAACTCCGTATACCTA
1 AGACTGGGAATGAACTCCGTAT-CCTA
36027325 A
1 A
36027326 TTCAACCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATCCTA
Found at i:36028140 original size:26 final size:26
Alignment explanation
Indices: 36028111--36028163 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36028101 CCGATTCGAT
36028111 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
*
36028137 CTTAGACTGAGGATGAACTTCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
36028163 C
1 C
36028164 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:36028559 original size:343 final size:327
Alignment explanation
Indices: 36027875--36029208 Score: 934
Period size: 331 Copynumber: 4.0 Consensus size: 327
36027865 TTGAGCTGAC
* * * * * *
36027875 CGAAGAGGCATAATGCGCAAGCCGAGGATCGACCTGGTCCCCCTCTACATGCTGCCAGTCCAATT
1 CGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCTGGT-CCCCTCTACGTGCTACCGGTCCCACT
* * *
36027940 ACCACAACCCTGGGTCCGACTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
65 GCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * *
36028005 CGAAACTGACGTGCGGGCGCTCAACCGACTGGGGGGGCAGAATGCGCAAGTCGAGGATCGACCCA
130 CGAAAC-GACGTGCGGGCGCTCAACCG-CTGGAGAGGCAGAATGTGCAAG-CCAGGATCGACCCA
*
36028070 GTCCCCCCTGAGTGCTACCGCAACCCTCGGTCCGATTCGATCTTAGACTGGGAATGAACTCCGTA
192 GTCCCCCCTGAGTGCTACCGCAACCCTCGGTCCGATTCAATCTTAGACTGGGAATGAACTCCGTA
* * * *
36028135 TGCTTAGACTGAGGATGAACTTCGTATGCCTAAGTCAACAGACGAAACGAGTGTGCGGGCACTGA
257 TGCTTAGACTGAGGATGAACTCCATATGCCTAAGTCAACACACGAAACGAGTGTGCGGGCACTCA
36028200 GCCGAT
322 GCCGAT
* *
36028206 CGAAGAGGCATAATGCGCAAGCC-AGGGATCGGCCTAGTCCCCTTCTGCGTGCTACCGGTCCCAC
1 CGAAGAGGCATAATGCGCAAGCCGA-GGATCGGCCTGGTCCCC-TCTACGTGCTACCGGTCCCAC
* *
36028270 TGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCC
64 TGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* * * * *
36028335 ATGAAACGGACGTGTGGGCGCTCAACCAGCTGGAGAGGTAGAATGTGTAAGCCAGGCATCGACTC
129 ACGAAAC-GACGTGCGGGCGCTCAACC-GCTGGAGAGGCAGAATGTGCAAGCCAGG-ATCGACCC
* * * * *
36028400 GGTCCCCGCTGCGTGATGTCGACCTTGCTGTCGTAACCCTTGGTCTGATTCAATCTTAGACTGGG
191 AGTCCCC-C--C-TGA-GT-G--C-TAC---CGCAACCCTCGGTCCGATTCAATCTTAGACTGGG
* * * *
36028465 AATGAACTTCGTATGCTTAGACT-ACGGATGAACTCCATATGCCTAAGTCAACCCATGAAATGAG
244 AATGAACTCCGTATGCTTAGACTGA-GGATGAACTCCATATGCCTAAGTCAACACACGAAACGAG
* *
36028529 TGTGCGGGCGCTCAGCCG-G
308 TGTGCGGGCACTCAGCCGAT
* * * ** *
36028548 CTGAAGAGGCATAATGCTCAAGCCGAGGATCAGCCCGGTCCCGCTCTTTGTGCTGTAAATCTCGC
1 C-GAAGAGGCATAATGCGCAAGCCGAGGATCGGCCTGGTCCC-CTCTACGTGC--T--A-C-CGG
* * * *
36028613 TGCCAGTCTTGCTACCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGC
58 TCCCA--C-TG---CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGC
*
36028678 CTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAACCGGCTGGAGAGGCAGAATGTGCAAGCT
117 CTAAGCCAACCCACGAAACGA-CGTGCGGGCGCTCAACC-GCTGGAGAGGCAGAATGTGCAAGC-
** * * * * * * * * * * * *
36028743 GGGGACCGGCCCGGT-CCCCCTTACGTGCTATCG--ATCCT-GCTACCG---CAACCCTCGATTC
179 CAGGATCGACCCAGTCCCCCCTGA-GTGCTACCGCAACCCTCGGT-CCGATTCAATCTTAGACTG
* * * * * *
36028801 GG--T---CT--G-AT-TTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAACGA
242 GGAATGAACTCCGTATGCTTAGACTGAGGATGAACTCCATATGCCTAAGTCAACACACGAAACGA
* * * * * *
36028857 GCGTACCGGCGCTAAGCCAGCT
307 GTGTGCGGGCACTCAGCC-GAT
* * * * * ** * * * **
36028879 AG-AGAGGCATAATGTGAAAGCCGGGGATTGGCCTACTCCCCCTCTCCATGCTACCGATCCTGCT
1 CGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCTGGT-CCCCTCTACGTGCTACCGGTCCCACT
* * ** * *
36028943 GTCACAACCCTCGATTTGGCTGGGGCTTAGACAGGGAATGAACTCCCTATGCCTAAGCCAACCCA
65 GCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * * * * *
36029008 CGAAACGGGCGTGTGGGCACT-AAGTCAGTTGGAGAGGCAAAAATGGGCAAGCCGTGGATC-AGC
130 CGAAAC-GACGTGCGGGCGCTCAA--CCGCTGGAGAGGC-AGAATGTGCAAGCC-AGGATCGA-C
* * * *
36029071 CC-GATCCCCCCT-ACGTGCTGCCAATCCTACTGTTGCAACCTTCGGTCTGATCCGATCTTAGAC
189 CCAG-TCCCCCCTGA-GTGCT----A--C--C----GCAACCCTCGGTCCGATTCAATCTTAGAC
* * * * *
36029134 TAGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
240 TGGGAATGAACTCCGTATGCTTAGACTGAGGATGAACTCCATATGCCTAAGTCAACACACGAAAC
*
36029199 GAGCGTGCGG
305 GAGTGTGCGG
36029209 ACGTTCAGTC
Statistics
Matches: 790, Mismatches: 139, Indels: 135
0.74 0.13 0.13
Matches are distributed among these distances:
316 2 0.00
317 84 0.11
318 27 0.03
319 6 0.01
320 2 0.00
321 1 0.00
322 1 0.00
323 4 0.01
324 1 0.00
325 1 0.00
326 1 0.00
327 1 0.00
329 87 0.11
330 17 0.02
331 164 0.21
332 7 0.01
333 4 0.01
334 1 0.00
335 12 0.02
336 3 0.00
337 2 0.00
338 10 0.01
339 1 0.00
340 6 0.01
341 6 0.01
342 3 0.00
343 146 0.18
344 53 0.07
345 1 0.00
346 1 0.00
347 2 0.00
348 1 0.00
349 7 0.01
350 4 0.01
351 2 0.00
352 2 0.00
353 1 0.00
354 4 0.01
355 110 0.14
356 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (327 bp):
CGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCTGGTCCCCTCTACGTGCTACCGGTCCCACTG
CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
GAAACGACGTGCGGGCGCTCAACCGCTGGAGAGGCAGAATGTGCAAGCCAGGATCGACCCAGTCC
CCCCTGAGTGCTACCGCAACCCTCGGTCCGATTCAATCTTAGACTGGGAATGAACTCCGTATGCT
TAGACTGAGGATGAACTCCATATGCCTAAGTCAACACACGAAACGAGTGTGCGGGCACTCAGCCG
AT
Found at i:36029031 original size:159 final size:157
Alignment explanation
Indices: 36028622--36029046 Score: 483
Period size: 158 Copynumber: 2.7 Consensus size: 157
36028612 CTGCCAGTCT
* * *
36028622 TGCTACCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCACAACCCTCGATTCGGCT-GGGCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
36028687 CCCACGAAACAAGCGTGCGGGCGCTCAA-CCGGCTGGAGAGGCAGAATGTGCAAGCTGGGGACCG
65 CCCACGAAACGAGCGTGCGGGCGCT-AAGCCAGCTGGAGAGGCAGAATGTGAAAGCCGGGGACCG
** * *
36028751 GCCCGGTCCCCCTTACGTGCTATCGATCC
129 GCCCACTCCCCCTTACATGCTACCGATCC
* *** * * *
36028780 TGCTACCGCAACCCTCGATTCGGTCTGATTTTAGACTGGGAATGAACTCCGTATACCTAAGTCAA
1 TGCTACCACAACCCTCGATTCGG-CTGGGCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * **
36028845 CCCACGAAACGAGCGTACCGGCGCTAAGCCAGCTAGAGAGGCATAATGTGAAAGCCGGGGATTGG
65 CCCACGAAACGAGCGTGCGGGCGCTAAGCCAGCTGGAGAGGCAGAATGTGAAAGCCGGGGACCGG
* *
36028910 CCTACTCCCCCTCTCCATGCTACCGATCC
130 CCCACTCCCCCT-TACATGCTACCGATCC
** * *
36028939 TGCTGTCACAACCCTCGATTTGGCTGGGGCTTAGACAGGGAATGAACTCCCTATGCCTAAGCCAA
1 TGCTACCACAACCCTCGATTCGGCT-GGGCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
36029004 CCCACGAAACGGGCGTGTGGGCACTAAGTCAGTTGGAGAGGCA
65 CCCACGAAACGAGCGTGCGGGCGCTAAGCCAGCTGGAGAGGCA
36029047 AAAATGGGCA
Statistics
Matches: 218, Mismatches: 45, Indels: 7
0.81 0.17 0.03
Matches are distributed among these distances:
157 2 0.01
158 115 0.53
159 101 0.46
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
TGCTACCACAACCCTCGATTCGGCTGGGCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGCGCTAAGCCAGCTGGAGAGGCAGAATGTGAAAGCCGGGGACCGGC
CCACTCCCCCTTACATGCTACCGATCC
Found at i:36029110 original size:159 final size:157
Alignment explanation
Indices: 36028630--36029110 Score: 489
Period size: 159 Copynumber: 3.0 Consensus size: 157
36028620 CTTGCTACCA
* * *
36028630 CAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
1 CAACCCTCGATTCGGCT-GGGCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * * * * *
36028695 ACAAGCGTGCGGGCGCTCAA-CCGGCTGGAGAGGCAGAATGTGCAAGCTGGGGACCGGCCCGGTC
65 ACGAGCGTGCGGGCGCT-AAGCCAGCTGGAGAGGCAAAATGTGCAAGCCGGGGATCAGCCCGATC
* * **
36028759 CCCCTTACGTGCTATCGATCCTGCTACCG
129 CCCCCTACGTGCTACCGATCCTGCTGTCG
*** * * *
36028788 CAACCCTCGATTCGGTCTGATTTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAA
1 CAACCCTCGATTCGG-CTGGGCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * * * * * *
36028853 ACGAGCGTACCGGCGCTAAGCCAGCTAGAGAGGCATAATGTGAAAGCCGGGGAT-TGGCCTACTC
65 ACGAGCGTGCGGGCGCTAAGCCAGCTGGAGAGGCAAAATGTGCAAGCCGGGGATCAGCCCGA-TC
* * *
36028917 CCCCTCTCCATGCTACCGATCCTGCTGTCA
129 CCCC-CTACGTGCTACCGATCCTGCTGTCG
* *
36028947 CAACCCTCGATTTGGCTGGGGCTTAGACAGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
1 CAACCCTCGATTCGGCT-GGGCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * * * * *
36029012 ACGGGCGTGTGGGCACTAAGTCAGTTGGAGAGGCAAAAATGGGCAAGCCGTGGATCAGCCCGATC
65 ACGAGCGTGCGGGCGCTAAGCCAGCTGGAGAGGC-AAAATGTGCAAGCCGGGGATCAGCCCGATC
* * * *
36029077 CCCCCTACGTGCTGCCAATCCTACTGTTG
129 CCCCCTACGTGCTACCGATCCTGCTGTCG
36029106 CAACC
1 CAACC
36029111 TTCGGTCTGA
Statistics
Matches: 257, Mismatches: 59, Indels: 13
0.78 0.18 0.04
Matches are distributed among these distances:
157 5 0.02
158 103 0.40
159 123 0.48
160 22 0.09
161 4 0.02
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
CAACCCTCGATTCGGCTGGGCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
CGAGCGTGCGGGCGCTAAGCCAGCTGGAGAGGCAAAATGTGCAAGCCGGGGATCAGCCCGATCCC
CCCTACGTGCTACCGATCCTGCTGTCG
Found at i:36029168 original size:26 final size:26
Alignment explanation
Indices: 36029127--36029179 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36029117 CTGATCCGAT
*
36029127 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
36029153 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
36029179 C
1 C
36029180 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:36030389 original size:26 final size:26
Alignment explanation
Indices: 36030351--36030403 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
36030341 CTGATCTGAT
*
36030351 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
36030377 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
36030403 C
1 C
36030404 CTAACTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:36031284 original size:26 final size:26
Alignment explanation
Indices: 36031248--36031300 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
36031238 TCAGTCCAAT
36031248 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
36031274 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36031300 C
1 C
36031301 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36031981 original size:26 final size:26
Alignment explanation
Indices: 36031943--36031995 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36031933 GGGTCAAATT
36031943 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
36031969 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
36031995 C
1 C
36031996 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:36033696 original size:26 final size:27
Alignment explanation
Indices: 36033667--36033720 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
36033657 CCCGTCCGAT
36033667 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTGGGGAATGAACTCCGTATG
*
36033693 CTTAGACTGGGGAATGAACTCTGTATG
1 CTTAGACTGGGGAATGAACTCCGTATG
36033720 C
1 C
36033721 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 8 0.31
27 18 0.69
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGGAATGAACTCCGTATG
Found at i:36034006 original size:356 final size:344
Alignment explanation
Indices: 36033350--36034488 Score: 1035
Period size: 356 Copynumber: 3.3 Consensus size: 344
36033340 CTGGTCCAAT
* * * * * * ** *
36033350 CTTAGTCTAGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCAGGCATTGAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGACGCTCAGC
* * * * * * * *
36033415 TGGCCGAAAAGGCATAATGCCCTAG-CTGGGGATCGGCC-CGATCCCCC--C---CTG-CG-TGC
66 CGACCGGAGAGGCAGAATGCACAAGTC-GGGGATC-GCCTCGATCCCCCTACGTGCTGTCGATCC
* * *
36033471 TGCTGGTCCCGCTGCCACAACCCTCCGTCTGGCTGGGGCTTCA-ACATGGAATGAACTCCCTATG
129 TGC-GGTCCTGCTACCACAA-CCT-CGTCTGACTGGGGCTT-AGACATGGAATGAACTCCCTATG
* * * * * *
36033535 CCAAAGCTAACCCACAAAATGGGCATACGGGCGCTCAGCTGGCCGGAGAGGCAGAATACGCAAGC
190 CCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAGC--GCCGGAGAGGCAGAATGCGCAAGC
* * ** * *
36033600 CGGGGATCGGCTTGGTCCCCCCTGCGTGCTGTCGATCCTGCTATTGCAACCTTCGGTCCCGTCCG
253 CGGGGATCAGC-TCGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGCAACCATCGGTCCAGTCCG
*
36033665 ATCTTAGACTGGGAATGAACTCCGTATG
317 ATCTTAGACTGGGAATGAACTCTGTATG
* *
36033693 CTTAGACTGGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACAGATGCTCAG
1 CTTAGACT-GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGACGCTCAG
* * ** *
36033758 CCGATCGGAGAGGCATAATGCTTAAGTCGGGGATCAGCCT-GATCCCCCTCTGCGTGCTGTCGAT
65 CCGACCGGAGAGGCAGAATGCACAAGTCGGGGATC-GCCTCGAT-CCCC-CTACGTGCTGTCGA-
*
36033822 CTCGCTGTCGGTCCTGCTACCACAACGCTCGATCTGACTGGGGCTTAGACATGGAATGAACTCCG
126 -TC-CTG-CGGTCCTGCTACCACAAC-CTCG-TCTGACTGGGGCTTAGACATGGAATGAACTCCC
* * *
36033887 TATGCCTAAGCCAACTCACGAAACGAGCATGCGGGCGCTCAGGCAGTCGGAGAGGCAGAATGCGC
186 TATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCA-GC-GCCGGAGAGGCAGAATGCGC
* * * *
36033952 AAGTCGGGGATCAGCCCGATCCCCCCTGCGTGTTGTCGATCCTGCTGCTGCAACCATCGGTCTAG
249 AAGCCGGGGATCAGCTCG-TCCCCCCTGCGTGCTGTCGATCCTGCTGCTGCAACCATCGGTCCAG
* *
36034017 TTCGATCTTAGACTGGGAAAGAACTCTGTATG
313 TCCGATCTTAGACTGGGAATGAACTCTGTATG
* * * * *
36034049 CTTAGACAT-GGAATCAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGACGCTCAG
* * ** *
36034113 CCGGCCGGAGAGGTAGAATGCACAAGTCGGGGATCGGTTCGGTCCCCCTACGTGCTGTCGATCCT
65 CCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGCCTCGATCCCCCTACGTGCTGTCGATCCT
* * * * *
36034178 GC--TACTGC-A--AC--CCTCGGTCCGACTGGGGCTTAGATAGGGAATGAACTCCCTACGCCTA
130 GCGGTCCTGCTACCACAACCTC-GTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
* * * * * * * * * *
36034236 AGCCAACCCATGAAACGGGCGTGCGGGTGCTCAATCGACCAGAGAGGCACATTGCGTAAGCCAGA
194 AGCCAACCCACGAAACGGGCATGCGGGCGCTC-AGCG-CCGGAGAGGCAGAATGCGCAAGCCGGG
* ** * * * *
36034301 GATTTA-CTCGGGCCCCCTGTGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCTA-TCCGATC
257 GA-TCAGCTCGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGCAACCATCGGTCC-AGTCCGATC
36034364 TTAGACTGGGAATGAACTCTGTATG
320 TTAGACTGGGAATGAACTCTGTATG
* * * * * *
36034389 CTTAGACTAGGG-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAA
1 CTTAGACT-GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGACGCTCAG
* * * *
36034453 CCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCG
65 CCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCG
36034489 AACGGGTGGT
Statistics
Matches: 660, Mismatches: 106, Indels: 63
0.80 0.13 0.08
Matches are distributed among these distances:
339 1 0.00
340 151 0.23
341 94 0.14
342 5 0.01
343 7 0.01
344 81 0.12
345 5 0.01
346 2 0.00
347 5 0.01
348 1 0.00
349 1 0.00
350 3 0.00
351 5 0.01
352 2 0.00
353 13 0.02
354 6 0.01
355 85 0.13
356 189 0.29
357 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (344 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGACGCTCAGC
CGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGCCTCGATCCCCCTACGTGCTGTCGATCCTG
CGGTCCTGCTACCACAACCTCGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
CCAACCCACGAAACGGGCATGCGGGCGCTCAGCGCCGGAGAGGCAGAATGCGCAAGCCGGGGATC
AGCTCGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGCAACCATCGGTCCAGTCCGATCTTAGAC
TGGGAATGAACTCTGTATG
Found at i:36034061 original size:26 final size:26
Alignment explanation
Indices: 36034023--36034075 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
36034013 CTAGTTCGAT
*
36034023 CTTAGACTGGGAAAGAACTCTGTATG
1 CTTAGACTGGGAAACAACTCTGTATG
*
36034049 CTTAGACAT-GGAATCAACTCTGTATG
1 CTTAGAC-TGGGAAACAACTCTGTATG
36034075 C
1 C
36034076 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAACAACTCTGTATG
Found at i:36034404 original size:26 final size:26
Alignment explanation
Indices: 36034363--36034415 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36034353 CCTATCCGAT
*
36034363 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36034389 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
36034415 C
1 C
36034416 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36035782 original size:26 final size:26
Alignment explanation
Indices: 36035744--36035796 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
36035734 GGCTCAAAAT
36035744 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36035770 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
36035796 C
1 C
36035797 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36035956 original size:26 final size:26
Alignment explanation
Indices: 36035927--36035976 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
36035917 CTGGTCCGAT
36035927 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
36035953 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
36035977 CACCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.