Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 399 of 402
Found at i:36036575 original size:355 final size:358
Alignment explanation
Indices: 36035769--36036724 Score: 1144
Period size: 355 Copynumber: 2.7 Consensus size: 358
36035759 AACTCCGTAT
36035769 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-ATGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CCATGAAACGAGA-GTGCGGGTGCTCA
* * * * * *
36035833 GCTGATCGGAGAGGCAGAATGGGCAAGCCGAGGATCGG-TCCATCCCTTCTGCATGCTACCGATC
64 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGATCCCCTCTGCATGCTGCCGATC
* * ** **
36035897 CTACTGTCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
129 CTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTATGTATGCTTAGACTG
* *
36035962 GGGATGAACTCCGTACACCTAAGTCAACCCACGAAATGAGCGTGTGGGCACTCAGTCAACCGAAG
194 GGGATGAACTCCGTACACCTAAGTCAACCCACGAAA-GAGCATGCGGG--C-CAGT--ACC--AG
** * * * ** * *
36036027 AGGCCGGCCGGAGAGGCATAAGGTGCAAGTCGGGAATTAGCCTGGTCCCCCTCTGGGTGTTGTCG
251 A-GCCGGCCGGAGAGGCATAAGGCACAAGTCGGGAATCAACCCGGTCCCCCTCTACGAGCTGTCG
*
36036092 ATCTCGCTGCCGGTCTTGCTGCCACAACCCTCTATCCGGCTGGG
315 ATCTCGCTGCCGGTCCTGCTGCCACAACCCTCTATCCGGCTGGG
*
36036136 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGAGAGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCC-AACCATGAAACGAGAGTGCGGGTGCTCAG
* * * * * * *
36036201 TC-GACTGAAAAGACAGAATGCGCAAGCCGAGGATCGGCTCGATCCCCCCTGCATGTTGCCGATC
65 CCGGTC-GGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGATCCCCTCTGCATGCTGCCGATC
* *
36036265 CTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGATTG
129 CTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTATGTATGCTTAGACTG
* * *
36036330 GGGATGAACTCCGTACACCTAAGTCAACCCATGAAACGAGCATGCGGG-C-GT-TC-GA-CCGGT
194 GGGATGAACTCCGTACACCTAAGTCAACCCACGAAA-GAGCATGCGGGCCAGTACCAGAGCCGGC
* *
36036390 CGGAGAGGCATAAGGCATAAGTCGAGG-ATCAACCCGGTCCCTCTCTACGAGCTGTCGATC-CTG
258 CGGAGAGGCATAAGGCACAAGTCG-GGAATCAACCCGGTCCCCCTCTACGAGCTGTCGATCTC-G
* *
36036453 CTGTCGGTCCTGCTGCCACAACCTTCTATCCGGCTGGG
321 CTGCCGGTCCTGCTGCCACAACCCTCTATCCGGCTGGG
* * * *
36036491 GCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC-ATGAAACGAGAGTGCGGGTGCTCAG
* * * * *
36036556 CCGGTCGGAGAGGCAGAATGCGCAAGCC-AGGGATCGACCCGATCCCCTCTACGTGCTGTCGATC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGGCTCGATCCCCTCTGCATGCTGCCGATC
* * * *
36036620 CTGCTCCCACAACCCTCAGTCCTA-TTCAATCTTAGACTGGGAATGAACTATGTATGCTTAGACT
129 CTGCTGCCACAACCCTCGGTCC-AGTCCGATCTTAGACTGGGAATGAACTATGTATGCTTAGACT
* **
36036684 CGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAGAGC
193 GGGGATGAACTCCGTACACCTAAGTCAACCCACGAAAGAGC
36036725 GTGCAGGCAC
Statistics
Matches: 511, Mismatches: 68, Indels: 33
0.83 0.11 0.05
Matches are distributed among these distances:
354 10 0.02
355 277 0.54
356 5 0.01
357 2 0.00
360 1 0.00
363 2 0.00
364 1 0.00
366 1 0.00
367 86 0.17
368 126 0.25
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (358 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCATGAAACGAGAGTGCGGGTGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGATCCCCTCTGCATGCTGCCGATCCT
GCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTATGTATGCTTAGACTGGG
GATGAACTCCGTACACCTAAGTCAACCCACGAAAGAGCATGCGGGCCAGTACCAGAGCCGGCCGG
AGAGGCATAAGGCACAAGTCGGGAATCAACCCGGTCCCCCTCTACGAGCTGTCGATCTCGCTGCC
GGTCCTGCTGCCACAACCCTCTATCCGGCTGGG
Found at i:36036700 original size:26 final size:26
Alignment explanation
Indices: 36036650--36036702 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
36036640 CCTATTCAAT
*
36036650 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
36036676 CTTAGACTCGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTACGTATG
36036702 C
1 C
36036703 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:36036840 original size:184 final size:183
Alignment explanation
Indices: 36036504--36036852 Score: 406
Period size: 184 Copynumber: 1.9 Consensus size: 183
36036494 TAGAAATGGA
* * *
36036504 ATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTGCAGGCGCTCAGCCGGTCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCAGGCACTCAGCCGATCGGAGAGG
* * *
36036569 CAGAATGCGCAAGCCAGGGATCGACCCGATCCCCTCTACGTGCTGTCGATCCTGCTCCCACAACC
66 CAGAATGCACAAGCCAGGGATCGACCCGATCCCCTCTACATGCTGCCGATCCTGCTCCCACAACC
* *
36036634 CTCAGTCCTATTCAATCTTAGAC-TGGGAATGAACTATGTATGCTTAGACTCGGG
131 CTCAGT-CTATACAAGCTTAGACAT-GGAATGAACTATGTATGCTTAGACTCGGG
* * *
36036688 ATGAACTCCGTATGCCTAAGTCAACCCACGAAA-GAGCGTGCAGGCACTCAGTCGATCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCAGGCACTCAGCCGATCGGAGAGG
* * * * * *
36036752 CATAATGCACAAG-CTGAGGATCGACCCGTTCCCCCTCTGCATGCTGCC-AGT-CTCGTTGCCAC
66 CAGAATGCACAAGCCAG-GGATCGACCCGAT-CCCCTCTACATGCTGCCGA-TCCT-GCTCCCAC
*
36036814 AACCCTC-GAT-TATACTAGGGCTTAGACATGGAATGAACT
127 AACCCTCAG-TCTATAC-A-AGCTTAGACATGGAATGAACT
36036853 CCCTATACCT
Statistics
Matches: 139, Mismatches: 18, Indels: 16
0.80 0.10 0.09
Matches are distributed among these distances:
182 6 0.04
183 56 0.40
184 76 0.55
185 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (183 bp):
ATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCAGGCACTCAGCCGATCGGAGAGG
CAGAATGCACAAGCCAGGGATCGACCCGATCCCCTCTACATGCTGCCGATCCTGCTCCCACAACC
CTCAGTCTATACAAGCTTAGACATGGAATGAACTATGTATGCTTAGACTCGGG
Found at i:36037553 original size:26 final size:26
Alignment explanation
Indices: 36037524--36037596 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
36037514 TCTTAGACTG
* *
36037524 GGAATGAACTTCGTATCCCTAGACAT
1 GGAATGAACTCCGTATGCCTAGACAT
* * *
36037550 GGAATTAACTCCATATGCTTAGACAT
1 GGAATGAACTCCGTATGCCTAGACAT
36037576 GGAATGAACTCCGTATGCCTA
1 GGAATGAACTCCGTATGCCTA
36037597 AGCCAATCCA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCCTAGACAT
Found at i:36038068 original size:26 final size:26
Alignment explanation
Indices: 36038039--36038091 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36038029 CTGGTCCAAT
36038039 CTTAGACTGG-GAATAAACTCCATATG
1 CTTAGACTGGAG-ATAAACTCCATATG
*
36038065 CTTAGACTGGAGATGAACTCCATATG
1 CTTAGACTGGAGATAAACTCCATATG
36038091 C
1 C
36038092 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAGATAAACTCCATATG
Found at i:36039316 original size:26 final size:26
Alignment explanation
Indices: 36039277--36039330 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
36039267 GATCCGATCT
36039277 TAGACTAGGAATGAACTCCATATGCC
1 TAGACTAGGAATGAACTCCATATGCC
* * * *
36039303 TAGACTGGGGATGAACTTCGTATGCC
1 TAGACTAGGAATGAACTCCATATGCC
36039329 TA
1 TA
36039331 AGTCAACCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCATATGCC
Found at i:36039684 original size:26 final size:26
Alignment explanation
Indices: 36039643--36039695 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36039633 CCTGTCTGAT
36039643 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
36039669 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
36039695 C
1 C
36039696 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:36040224 original size:26 final size:26
Alignment explanation
Indices: 36040184--36040233 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
36040174 TGATCTGATC
36040184 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
36040210 TTAGACTGAGG-ATGAACTCCGTAT
1 TTAGACTG-GGAATGAACTCCGTAT
36040234 CCCTAACTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:36040601 original size:26 final size:26
Alignment explanation
Indices: 36040563--36040615 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
36040553 CCGGTCTGAT
*
36040563 CTTAGACTAGGAATTAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
36040589 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
36040615 C
1 C
36040616 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:36042225 original size:159 final size:160
Alignment explanation
Indices: 36041823--36042261 Score: 392
Period size: 159 Copynumber: 2.8 Consensus size: 160
36041813 AACTTCGTAC
* * * * *
36041823 GCTTAGACATTGAATGAACTCTGTATGCCTAAACCAACCCATGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
36041888 CCGGCCGGAGAGGTAGAATGCACAAGCTAGGGAT-TGACCCAATGCCCCCTACGTGCTATCGATC
66 CCGGCAGGAGAGGCAGAATGCGCAAGCTGGGGATCAGACCCAATCCCCCCTACGTGCTATCGATC
* * *
36041952 CTGCTATCACAACCCTTGATCTGGTCTCAT
131 CTGATACCACAACCCTCGATCTGGTCTCAT
* * * * * *
36041982 -CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCAGGAAACGAGCATACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * ** *
36042045 ACCGGCTGAAAAGGCATAATGCGCAAGCTGGGGATCAG-CCCGGTCCCCCTCTACGTG-T-TGCT
65 GCCGGCAGGAGAGGCAGAATGCGCAAGCTGGGGATCAGACCCAATCCCCC-CTACGTGCTAT-CG
* * * **
36042107 AGTCCTGATGCCACAAGCCTCGGTCTGG-CTGGT
128 A-TCCTGATACCACAACCCTCGATCTGGTCTCAT
* * *
36042140 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ****
36042205 TCGGGAGGAGAGGCAGAATGCGCAAG-TCGGGGATC-GATTTGATCCCCCCTACGTGCT
66 CCGGCAGGAGAGGCAGAATGCGCAAGCT-GGGGATCAGACCCAATCCCCCCTACGTGCT
36042262 GCCAATCCTA
Statistics
Matches: 219, Mismatches: 51, Indels: 20
0.76 0.18 0.07
Matches are distributed among these distances:
157 2 0.01
158 101 0.46
159 115 0.53
160 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCAGGAGAGGCAGAATGCGCAAGCTGGGGATCAGACCCAATCCCCCCTACGTGCTATCGATC
CTGATACCACAACCCTCGATCTGGTCTCAT
Found at i:36042335 original size:26 final size:26
Alignment explanation
Indices: 36042299--36042351 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36042289 CCGATCCGAT
36042299 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
36042325 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
36042351 C
1 C
36042352 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:36042717 original size:26 final size:26
Alignment explanation
Indices: 36042679--36042731 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36042669 TCAATCCGAT
*
36042679 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCAGTATG
36042705 CTTAGAC-ATGGAATGAACTCAGTATG
1 CTTAGACTA-GGAATGAACTCAGTATG
36042731 C
1 C
36042732 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCAGTATG
Found at i:36043347 original size:26 final size:26
Alignment explanation
Indices: 36043318--36043370 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
36043308 CCGGTCTGAT
* *
36043318 CTTAGACT-GGGAGTGAACTCTGTATG
1 CTTAGAATGGGGA-TGAACTCCGTATG
36043344 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGGATGAACTCCGTATG
36043370 C
1 C
36043371 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGGATGAACTCCGTATG
Found at i:36044306 original size:158 final size:158
Alignment explanation
Indices: 36044064--36044563 Score: 449
Period size: 159 Copynumber: 3.2 Consensus size: 158
36044054 ACTCCGTATG
* * * * * ***
36044064 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACACC-TGAAACGAGCGTGCGGGTGCTCA
1 CTTAGAC-TGGGAATGAACTCCATATGCATAAGCCAAC-CCACGAAACGAGCGTGCCGACACTCA
* * *
36044127 GCCAGCC-AGAGAGGCAGAATGCATAAGTCGGGGATCGACCCGGTCCCCCCTGTGTACTGTCAAT
64 GCCAGCCGA-AAAGGCAGAATGCATAAGTCGGGGATCGACCCGGTCCCCCCTGTGTGCTGCCAAT
* *
36044191 CCTGCTGCCACAACCCTCGGTCTGGTCTGAT
128 CCTACTGCCACAACCCTCGGTCCGGTCTGAT
* * * * *
36044222 CTTAGACTGGGAATGAACTCCGTATGTATAAGTCAACCCACGAAACGAGCGTG-CGAGCATTGAG
1 CTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCCGA-CACTCAG
* * * * * * * **
36044286 CCAGTCGAAAAGGCATAATGCATAAGCCGGGGATTGGCCTGGTCCCCCTCTATGTGCTGCCGGTC
65 CCAGCCGAAAAGGCAGAATGCATAAGTCGGGGATCGACCCGGTCCCCC-CTGTGTGCTGCCAATC
* * **
36044351 CCACTGCCACAACCTTCGGTCCGG-CTGGGG
129 CTACTGCCACAACCCTCGGTCCGGTCT-GAT
* * * * *
36044381 CTTAGACAT-GGAATGAACTCCCTGTGCCTAAGCCAACCCACGAAACGGGTGTGCCGACACTCAG
1 CTTAGAC-TGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCCGACACTCAG
* * * * * *
36044445 CCAGCCGAAGAGGTAGAATGCGTAAGTCGGGGA-CTGACCCGTTCCCCTCTGCGTGCTGCCAATC
65 CCAGCCGAAAAGGCAGAATGCATAAGTCGGGGATC-GACCCGGTCCCCCCTGTGTGCTGCCAATC
* * *
36044509 CTACTGCC-CAACCCTCGATCCAGTTTGAT
129 CTACTGCCACAACCCTCGGTCCGGTCTGAT
* *
36044538 CCTAGACTGGGAATGAGCTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
36044564 ATTAGACTAG
Statistics
Matches: 267, Mismatches: 64, Indels: 23
0.75 0.18 0.06
Matches are distributed among these distances:
156 1 0.00
157 37 0.14
158 107 0.40
159 118 0.44
160 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCCGACACTCAGC
CAGCCGAAAAGGCAGAATGCATAAGTCGGGGATCGACCCGGTCCCCCCTGTGTGCTGCCAATCCT
ACTGCCACAACCCTCGGTCCGGTCTGAT
Found at i:36044569 original size:26 final size:26
Alignment explanation
Indices: 36044540--36044589 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
36044530 AGTTTGATCC
*
36044540 TAGACT-GGGAATGAGCTCCATATGAT
1 TAGACTAGGG-ATGAACTCCATATGAT
*
36044566 TAGACTAGGGATGAACTCCGTATG
1 TAGACTAGGGATGAACTCCATATG
36044590 CCTAAGTTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (26 bp):
TAGACTAGGGATGAACTCCATATGAT
Found at i:36044757 original size:26 final size:26
Alignment explanation
Indices: 36044728--36044780 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
36044718 CCGATCCGAT
36044728 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
36044754 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
36044780 C
1 C
36044781 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:36045391 original size:11 final size:11
Alignment explanation
Indices: 36045359--36045384 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
36045349 CGGTTAGGCT
36045359 CTCCGACGATG
1 CTCCGACGATG
36045370 CTCCGACGATG
1 CTCCGACGATG
36045381 CTCC
1 CTCC
36045385 AGCGATGGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.42, G:0.23, T:0.19
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:36045916 original size:159 final size:158
Alignment explanation
Indices: 36045486--36045916 Score: 442
Period size: 159 Copynumber: 2.7 Consensus size: 158
36045476 AACTCCGCAT
* * *
36045486 GCTTAGACATGGAATGAACTCCGTCTGCCTACGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * *
36045551 CCGGCCGAAGAGGTAGAATGCACAAGCCAGGGATCGACCCGGTCCCCC-CTACGTGCTGTCGATC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCC-GGGATCGACTCGGTCCCCCTCTACGTGCTGCCGATC
*** ** * *
36045615 CTGTTGCTGCAACCCTCGATTCGCTCTGA
130 CCACTGCCACAACCCTCGATCCGCTCGGA
* * * * * * * * *
36045644 TCTTTGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAATGAGCGTGC-GACAGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCA-CTC
* * * *
36045707 AGTCGGCCGAAGAGGCATAATGCGCAAGTCAGGGATCGGCTCGGTCCCCCTCTACGTGCTGCC-A
64 AGCCGGCCGAAGAGGCAGAATGCGCAAG-CCGGGATCGACTCGGTCCCCCTCTACGTGCTGCCGA
*
36045771 GTCCCACTGCCACAACCCTC-AGTCCGGCT-GGG
128 -TCCCACTGCCACAACCCTCGA-TCC-GCTCGGA
* *
36045803 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * *
36045868 CCAGCCGGAGAGGCAGAATGCGTAAGCCGGAGATCGACTCGATCCCCCT
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGG-GATCGACTCGGTCCCCCT
36045917 GCATGCTACC
Statistics
Matches: 216, Mismatches: 47, Indels: 19
0.77 0.17 0.07
Matches are distributed among these distances:
157 3 0.01
158 92 0.43
159 114 0.53
160 7 0.03
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGATCGACTCGGTCCCCCTCTACGTGCTGCCGATCC
CACTGCCACAACCCTCGATCCGCTCGGA
Found at i:36045997 original size:26 final size:26
Alignment explanation
Indices: 36045961--36046013 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36045951 CAGGTTCGAT
36045961 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
* *
36045987 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
36046013 C
1 C
36046014 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:36046343 original size:26 final size:26
Alignment explanation
Indices: 36046307--36046359 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36046297 TTGATCCAAT
*
36046307 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
36046333 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36046359 C
1 C
36046360 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36046666 original size:355 final size:353
Alignment explanation
Indices: 36045649--36047128 Score: 1535
Period size: 355 Copynumber: 4.3 Consensus size: 353
36045639 TCTGATCTTT
* * * * * * * * *
36045649 GACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAATGAGCGTGC-GACAGCTGAGTCGG
1 GACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GCTCAGCCGA
* * * * *
36045713 CC-GAAGAGGCATAATGCGCAAGTCAGGGATCGGCTCGGTCCCC-CTC-TAC-GT-G---CTG--
65 CCAG-AGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCTCTCGTGCTGTCGATCCTGCT
* ** * * *
36045768 -CCAGTCCCACTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCC
129 ACCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCC
** * * *
36045832 TAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGCC-AGCCGGAGAGGCAGAATGCGTAAGCC
194 TAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAACCGA-CCGGAGAGGCAGAATGCGCAAGTC
* * * * * * * *
36045896 G-GAGATCGACTC-GATCCCCCTGCATGCTACCGATCCTGCTATCGCAACCCTCGGTCAGGTTCG
258 GAG-GATCGACCCTGATCCCCCTGCATGCTATCGATCCTGCTGTCGCAACCCTCGATCTGATCCA
*
36045959 ATCTTAGATTGGGAATGAACTCCGTATGCTTA
322 ATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * *
36045991 GATTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCAGGC
1 GACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGAC
* * ** * * *
36046056 CGGAGAGGCATAATACGCAAGTAGGGGATCAGCCCGAT---C-C-C--GCTGCCGATCCTGCTGC
66 CAGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCTCTCGTGCTGTCGATCCTGCTAC
* * ** *
36046114 TGGTCTTGCTGCCACAACCCTCAATCCGACTGGGGCTTAGACATGAAATGAACTCCGTATGCCTA
131 CGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
* ** * * * *
36046179 AGCCAACCCACAAAATGAGCGTACGGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAGCTGGA
196 AGCCAACCCACGAAACAAGCGTGCGGGCACTCAACCGACCGGAGAGGCAGAATGCGCAAG-TCGA
* * *
36046244 -GATC-AGCCTGATCCCTTCTGCATGCTATCGATCCTGCTGTCGCAACCCTC-AGTTTGATCCAA
260 GGATCGACCCTGATCCC-CCTGCATGCTATCGATCCTGCTGTCGCAACCCTCGA-TCTGATCCAA
*
36046306 TCTTAGACTGGGAATGAACTTCGTATGCTTA
323 TCTTAGACTGGGAATGAACTCCGTATGCTTA
* * **
36046337 GATTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGTTGAC
1 GACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGAC
* * *
36046402 CAGAGTGGCATAATGCGCAAGCTGGGGATCAGCCCGGTCCCCTTCTACGTGCTGTCGATCTTGCT
66 CAGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCC-TCT-CGTGCTGTCGATCCTGCT
* * * * *
36046467 ATCGGTCCTGCTGCAACTACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTTCGTATGCC
129 ACCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCC
* * ** ***
36046532 TAAGGCAACCCACCAAACAAGCGTGCGGGTGCTCAACCGGTAGGAGAGGCAGAATGCGCAAGTCG
194 TAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAACCGACCGGAGAGGCAGAATGCGCAAGTCG
* * * * * **
36046597 AGGATTGACCCTG-TCCCCCCTGTATGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGATCTGA
259 AGGATCGACCCTGAT-CCCCCTGCATGCTATCGATCCTGCTGTCGCAACCCTCGATCTGATCCAA
36046661 TCTTAGACTGGGAATGAACTCCGTATGCTTA
323 TCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * **
36046692 GACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAACCGGT
1 GACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGAC
** * * * **
36046757 TGGGGAGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTCTGTGTGCTGTCGATCCCACT
66 CAGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGT-CCCCTCT-CGTGCTGTCGATCCTGCT
* *
36046822 ACCAGTCCTACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCC
129 ACCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCC
* *
36046887 TAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGTCG
194 TAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAACCGACCGGAGAGGCAGAATGCGCAAGTCG
* * *
36046952 AGGATCGGCCC-GGTCCCCC--C-TG----C-A---TGCTGTCGCAACCCTCGGTCTGATCCAAT
259 AGGATCGACCCTGATCCCCCTGCATGCTATCGATCCTGCTGTCGCAACCCTCGATCTGATCCAAT
36047005 CTTAGAC-GAGGAATGAACTCCGTATGCTTA
324 CTTAGACTG-GGAATGAACTCCGTATGCTTA
* * * *
36047035 GACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCGCAGTCGAC
1 GACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGAC
** *
36047100 CAGAGAGGCAGGATGCACAAGCCGGGGAT
66 CAGAGAGGCATAATGCGCAAGCCGGGGAT
36047129 GGAACAGGTG
Statistics
Matches: 951, Mismatches: 155, Indels: 63
0.81 0.13 0.05
Matches are distributed among these distances:
337 1 0.00
338 2 0.00
339 3 0.00
342 87 0.09
343 131 0.14
344 2 0.00
345 119 0.13
346 159 0.17
347 1 0.00
349 1 0.00
351 3 0.00
353 1 0.00
354 9 0.01
355 419 0.44
356 13 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (353 bp):
GACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGAC
CAGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCTCTCGTGCTGTCGATCCTGCTAC
CGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
AGCCAACCCACGAAACAAGCGTGCGGGCACTCAACCGACCGGAGAGGCAGAATGCGCAAGTCGAG
GATCGACCCTGATCCCCCTGCATGCTATCGATCCTGCTGTCGCAACCCTCGATCTGATCCAATCT
TAGACTGGGAATGAACTCCGTATGCTTA
Found at i:36046691 original size:26 final size:26
Alignment explanation
Indices: 36046662--36046714 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36046652 CCGATCTGAT
36046662 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
36046688 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36046714 C
1 C
36046715 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36047087 original size:172 final size:173
Alignment explanation
Indices: 36046633--36047128 Score: 483
Period size: 171 Copynumber: 2.9 Consensus size: 173
36046623 CTGTCGATCC
* * **
36046633 TGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTG-GGAATGAACTCCGTATGCTTAGACTG
1 TGCTGTCGCAACCCTCGATCAGATCCAATCTTAGAC-GAGGAATGAACTCCGTATGCTTAGACTG
* * *** *
36046697 GGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAACCGGTTGGGG
65 GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAACCGACCGGAG
* * **
36046762 AGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTCTGTG
130 AGGCAGAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTCTGCA
* * * * * * * ****
36046806 TGCTGTCG-ATCCCACTACCAG-TCCTA-C-T-G-CCA-CAACCCTCGGTCCG-ACTGGGGCTTA
1 TGCTGTCGCAACCCTCGATCAGATCCAATCTTAGACGAGGAATGAAC--TCCGTA-T---GCTTA
* *
36046863 GACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAACCGA
60 GAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAACCGA
* *
36046927 CCGGAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGGTCCCCC-CTGCA
124 CCGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTCTGCA
* *
36046976 TGCTGTCGCAACCCTCGGTCTGATCCAATCTTAGACGAGGAATGAACTCCGTATGCTTAGACTGG
1 TGCTGTCGCAACCCTCGATCAGATCCAATCTTAGACGAGGAATGAACTCCGTATGCTTAGACTGG
** * * ** *
36047041 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCGCAGTCGACCAGAGA
66 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAACCGACCGGAGA
* *
36047106 GGCAGGATGCACAAGCCGGGGAT
131 GGCAGAATGCACAAGCCGAGGAT
36047129 GGAACAGGTG
Statistics
Matches: 253, Mismatches: 53, Indels: 35
0.74 0.16 0.10
Matches are distributed among these distances:
166 3 0.01
167 2 0.01
168 6 0.02
169 1 0.00
170 12 0.05
171 110 0.43
172 98 0.39
173 8 0.03
174 1 0.00
175 6 0.02
176 3 0.01
177 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (173 bp):
TGCTGTCGCAACCCTCGATCAGATCCAATCTTAGACGAGGAATGAACTCCGTATGCTTAGACTGG
GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAACCGACCGGAGA
GGCAGAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTCTGCA
Found at i:36047767 original size:26 final size:26
Alignment explanation
Indices: 36047727--36047779 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36047717 GGCTCAAAAT
36047727 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
36047753 CTTAGACATGG-AATGAGCTCCGTATG
1 CTTAGAC-TGGCAATGAACTCCGTATG
36047779 C
1 C
36047780 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:36048256 original size:26 final size:26
Alignment explanation
Indices: 36048227--36048279 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36048217 CCGATCCGAT
36048227 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* * *
36048253 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
36048279 C
1 C
36048280 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:36048611 original size:26 final size:26
Alignment explanation
Indices: 36048570--36048622 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
36048560 CTGATCCAAT
36048570 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
36048596 CTTAGACTGGGG-ATGAACTCCGTATG
1 CTTAGAC-GGGGAATGAACTCCGTATG
36048622 C
1 C
36048623 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCGTATG
Found at i:36048651 original size:172 final size:172
Alignment explanation
Indices: 36048201--36048693 Score: 484
Period size: 171 Copynumber: 2.9 Consensus size: 172
36048191 TTGATCCTGG
* * * *
36048201 TGCCGCAACCCTTGGCCCGATCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGGA
1 TGCCGCAACCCTCGGTCTGATCC-ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGA
* *** *
36048266 TGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGGGCTCAACCGGTTGGGGAGGC
65 TGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAACCGACCGGAGAGGC
* * * *
36048331 ATAATGCGCAAGTCGAGGATCAGCCCGGTCCCCCTCTGCGTGC
130 AGAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTCTGCATGC
* * * ** * *** **
36048374 TGCCG-ATCCCACTACCAGTCCT-ACTGCCA-C-AACCCTCGGTCCG-ACT--G-GGGCTTAGAC
1 TGCCGCA-ACC-CT--CGGT-CTGA-T-CCATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* *
36048431 AT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAACCGACCG
59 -TGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAACCGACCG
*
36048495 GAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCC-CTGCATGC
123 GAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTCTGCATGC
* *
36048544 TGTCGCAACCCTCGGTCTGATCCAATCTTAGACGGGGAATGAACTCCGTATGCTTAGACTGGGGA
1 TGCCGCAACCCTCGGTCTGATCC-ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGA
* ** * ** *
36048609 TGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCGCAGTCGACCAGAGAGGC
65 TGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAACCGACCGGAGAGGC
* *
36048674 AGGATGCACAAGCCGGGGAT
130 AGAATGCACAAGCCGAGGAT
36048694 GGAACAGGTG
Statistics
Matches: 251, Mismatches: 51, Indels: 37
0.74 0.15 0.11
Matches are distributed among these distances:
165 2 0.01
166 4 0.02
167 5 0.02
168 5 0.02
169 5 0.02
170 13 0.05
171 103 0.41
172 89 0.35
173 7 0.03
174 5 0.02
175 5 0.02
176 3 0.01
177 3 0.01
178 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (172 bp):
TGCCGCAACCCTCGGTCTGATCCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGAT
GAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAACCGACCGGAGAGGCA
GAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTCTGCATGC
Found at i:36049803 original size:158 final size:158
Alignment explanation
Indices: 36049316--36049816 Score: 413
Period size: 158 Copynumber: 3.2 Consensus size: 158
36049306 ACTCCGTATG
** * * *
36049316 CTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
36049381 TGGCCGGAGAGGTAGAATGCTCAAGTCGGGGATCGCCCTTGTC-CCCCTTACGTGCTATCGATCC
66 CGGTCGGAGAGGCAGAATGCTCAAGCCGGAGATCGACCTAGTCTCCCC-TACGTGCTGTCGATCC
** * *
36049445 TGCTATGGCAACCCTCAGTCTGATTC-AAT
130 TGCTACCGCAACCCTCAGTCT-AGTCTGAT
* * * * * * *
36049474 CTTTGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCCAAGAAACGAG-GTACGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAG
* ** * * * * * *
36049537 CCGATCAAAGAGGCATAATGCGCAAGCC-GAGGATCGACCCAGTCCTACTCTACGTGCTGTCGGT
65 CCGGTCGGAGAGGCAGAATGCTCAAGCCGGA-GATCGACCTAGT-CTCCCCTACGTGCTGTCGAT
* * * * * **
36049601 CCCGCTGCCACAACCCTTAGTCT-GGCTGGGG
128 CCTGCTACCGCAACCCTCAGTCTAGTCT-GAT
* * * * *
36049632 CTTAAACATGGAATGAACTCCCTATGCCTAAGCCAAGCCATGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
36049697 CGGTCGGTGAGACAGAATGCTCAAGCCGGAGATCGGCCTGGTCTCCGCTGCGTGCTGTCGATCCT
66 CGGTCGGAGAGGCAGAATGCTCAAGCCGGAGATCGACCTAGTCTCCCCTACGTGCTGTCGATCCT
*
36049762 GCTACCGCAACCCTCGGTCTAGTCTGAT
131 GCTACCGCAACCCTCAGTCTAGTCTGAT
*
36049790 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
36049817 TTAGACTGGG
Statistics
Matches: 257, Mismatches: 75, Indels: 22
0.73 0.21 0.06
Matches are distributed among these distances:
156 2 0.01
157 39 0.15
158 167 0.65
159 47 0.18
160 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCTCAAGCCGGAGATCGACCTAGTCTCCCCTACGTGCTGTCGATCCT
GCTACCGCAACCCTCAGTCTAGTCTGAT
Found at i:36049819 original size:26 final size:26
Alignment explanation
Indices: 36049790--36049842 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36049780 CTAGTCTGAT
*
36049790 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
36049816 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36049842 C
1 C
36049843 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36054317 original size:26 final size:26
Alignment explanation
Indices: 36054277--36054328 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36054267 TGGCTCAAAA
36054277 TCTTAGACTGAGAATGAACTCCGTAT
1 TCTTAGACTGAGAATGAACTCCGTAT
36054303 TCTTAGACATG-GAATGAACTCCGTAT
1 TCTTAGAC-TGAGAATGAACTCCGTAT
36054329 GCCTAAGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (26 bp):
TCTTAGACTGAGAATGAACTCCGTAT
Found at i:36054706 original size:159 final size:158
Alignment explanation
Indices: 36054304--36054726 Score: 474
Period size: 159 Copynumber: 2.7 Consensus size: 158
36054294 ACTCCGTATT
*
36054304 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGAGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCG-GCGCTCAGC
* * * *
36054369 CGATCGGAGAGGTAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCTCTCCGTGCTGTCGATCC
65 CGGTCGGAGAGGTAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCTCTCCGTGCTGTCGATCC
* ** * * *
36054434 TACCACTGCAACCCTCGGTCTGGTCTGAT
130 CACCACCACAACCCTCGGTCTCGACTGAG
* * * * *
36054463 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-GGCGCTCAG
* * * * * * *
36054527 CCGGTCGCAGAAGCATAATGCGTAAGCTGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTTGGTC
64 CCGGTCGGAGAGGTAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCTCTCCGTGCTGTCGATC
* * *
36054592 CCGCTACCACAACCCTCGGTC-CGACTGGGG
129 CCACCACCACAACCCTCGGTCTCGACT-GAG
* *
36054622 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-GGCGCTCAGC
* * * * *
36054687 TGGTTGGATAGGTAGAATGCGCAAG-TCGAGGATCGGCCCG
65 CGGTCGGAGAGGTAGAATGCGTAAGCT-GGGGATCGGCCCG
36054727 GCCCCCTTGT
Statistics
Matches: 216, Mismatches: 43, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
158 5 0.02
159 209 0.97
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGCGCTCAGCC
GGTCGGAGAGGTAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCTCTCCGTGCTGTCGATCCC
ACCACCACAACCCTCGGTCTCGACTGAG
Found at i:36057116 original size:26 final size:26
Alignment explanation
Indices: 36057078--36057130 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
36057068 GGCTCAAAAT
* *
36057078 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
36057104 CTTAGACAT-GGAAAGAACTCCGTATG
1 CTTAGAC-TGGGAAAGAACTCCGTATG
36057130 C
1 C
36057131 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:36057614 original size:26 final size:26
Alignment explanation
Indices: 36057578--36057630 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36057568 CCAGTCCGAT
**
36057578 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAACAAACTCTGTATG
*
36057604 CTTAGACTGGGGACAAACTCTGTATG
1 CTTAGACTGGGAACAAACTCTGTATG
36057630 C
1 C
36057631 CAAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAACAAACTCTGTATG
Found at i:36058140 original size:159 final size:157
Alignment explanation
Indices: 36057786--36058695 Score: 790
Period size: 159 Copynumber: 5.7 Consensus size: 157
36057776 TCTGACTAGA
* * *
36057786 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTGAG
* * * * * * * * *
36057851 TCGGTCGGAGAGGCAGACTACGCAAGTCGAGGA-CCGCCCGGTCCCCTCTACGTGCTGTCGATCC
66 -CGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGTCGGTCC
* * * * *
36057915 TGCTATCGCAACCCTCGGTCCTGTCT-GA
130 CGCTGTCACAACCCTCGGTCC-GGCTGGG
* * * *
36057943 TCTTAGAC-TAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTGA
* * * * * *
36058007 GCAGGCCGGAGAGGCATAATGTGCAAGCCGGGGATCAGCTCGGTCCCCTTCTACATGCTGTTGGT
65 GC-GGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCC-TCTGCGTGCTGTCGGT
*
36058072 CCCGCTGCCACAACCCTCGGTCCGGCTGGG
128 CCCGCTGTCACAACCCTCGGTCCGGCTGGG
* * * * * *
36058102 GCTTAGACATGGAATGAACTCCGTATACCAAAGCCAACCCACGAGACGAGCGTGTGGGCACTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTGAG
* * * ** * *
36058167 CCGACCGGAGTGGCATAATGCGCAAGCCGGGGAACGGCCCAATCCTCCTCTGCGTGCTGCCAGTC
66 -CGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCC-CCTCTGCGTGCTGTCGGTC
* * * *
36058232 CCGTTGCCACAACCCCCCGATCCGGCTGGG
129 CCGCTGTCACAA-CCCTCGGTCCGGCTGGG
* * * * * * * *
36058262 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGGGAGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTGAG
* * * * * * * *
36058327 TCGGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGACCC-GACCTCC-CATGCATGCTGCCGAT
66 -CGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCC-CCTC-TGCGTGCTGTCGGT
* ** * * * *
36058390 CCTGCTGTCGTAACCCTTGGTCCGGTTCGA
128 CCCGCTGTCACAACCCTCGGTCCGGCTGGG
* * * * * * * *
36058420 TCTTAGAC-TGGGAGTGAACTTCATATGCCTAAGTCAACCCACAAAATGAGCGCGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTGA
* * *
36058484 GCCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTATCGGT
65 G-CGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCTCTGCGTGCTGTCGGT
* * *
36058549 CTCGCTGTCACAACCCTCGATCCGGCTAGG
128 CCCGCTGTCACAACCCTCGGTCCGGCTGGG
* * *
36058579 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-CAGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGA-GCGTGCGGGCGCTGA
* * * * * ** *
36058643 ACTGGTCGAAGAGGCAGAATGCGCAAGTCAAGGATCGGCCCGGTCCCCCCTGC
65 GC-GGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTGC
36058696 ATGTTATCGA
Statistics
Matches: 601, Mismatches: 135, Indels: 33
0.78 0.18 0.04
Matches are distributed among these distances:
156 2 0.00
157 81 0.13
158 122 0.20
159 288 0.48
160 108 0.18
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTGAG
CGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGTCGGTCCC
GCTGTCACAACCCTCGGTCCGGCTGGG
Found at i:36058709 original size:317 final size:318
Alignment explanation
Indices: 36058162--36058756 Score: 784
Period size: 317 Copynumber: 1.9 Consensus size: 318
36058152 CGTGTGGGCA
* * * *
36058162 CTGAGCCGACCGGAGTGGCATAATGCGCAAGCCGGGGAACGGCCCAATCCTCCTCTGCGTGCTGC
1 CTGAGCCGACCGGAGAGGCATAATGCGCAAGCCAGGGAACGGCCCAATCCCCCTCTGCGTGCTAC
* *
36058227 CAGTCCCGTTGCCACAACCCCCCGATCCGGCTGGGGCTTAAACATGGAATGAACTCCCTATGCCT
66 CAGTCCCGCTGCCACAACCCCCCGATCCGGCTAGGGCTTAAACATGGAATGAACTCCCTATGCCT
* * * * * *
36058292 AAGCCAACCAACGAAACGGGAGTGCGGGTGCTCAGTCGGCCGGAGAGGTAGAATGCGCAAGCCAG
131 AAGCCAACCAACGAAACAGGAGTGCGGGCGCTCACTCGGCCGAAGAGGCAGAATGCGCAAGCCAA
* * * * * *
36058357 GGATCGACCCGACCTCCCATGCATGCTGCCGATCCTGCTGTCGTAACCCTTGGTCCGGT-TCGAT
196 GGATCGACCCGACCTCCCATGCATGCTACCGATCCTACTGTCGCAAACCTCGATCCGGTCT-GAT
*
36058421 CTTAGACTGGGAGTGAACTTCATATGCCTAAGTCAACCCACAAAATGAGCGCGCGGGTG
260 CTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACAAAATGAGCGCGCGGGTG
* * * *
36058480 CTGAGCCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTAT
1 CTGAGCCGACCGGAGAGGCATAATGCGCAAGCCAGGGAACGGCCCAATCCCCCTCTGCGTGCTAC
* * * * *
36058545 CGGTCTCGCTGTCACAA-CCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCT
66 CAGTCCCGCTGCCACAACCCCCCGATCCGGCTAGGGCTTAAACATGGAATGAACTCCCTATGCCT
* * * *
36058609 AAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAACT-GGTCGAAGAGGCAGAATGCGCAAGTCA
131 AAGCCAACCAACGAAACAGGAGTGCGGGCGCTC-ACTCGGCCGAAGAGGCAGAATGCGCAAGCCA
* * * * * *
36058673 AGGATCGGCCCGGTCC-CCCCTGCATGTTATCGATCCTACTGTCGCAAACCTCGATCTGGTCTGA
195 AGGATCGACCC-GACCTCCCATGCATGCTACCGATCCTACTGTCGCAAACCTCGATCCGGTCTGA
*
36058737 TCTTAGACTGTGAATGAACT
259 TCTTAGACTGGGAATGAACT
36058757 CCGTATGCTT
Statistics
Matches: 235, Mismatches: 39, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
317 159 0.68
318 76 0.32
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (318 bp):
CTGAGCCGACCGGAGAGGCATAATGCGCAAGCCAGGGAACGGCCCAATCCCCCTCTGCGTGCTAC
CAGTCCCGCTGCCACAACCCCCCGATCCGGCTAGGGCTTAAACATGGAATGAACTCCCTATGCCT
AAGCCAACCAACGAAACAGGAGTGCGGGCGCTCACTCGGCCGAAGAGGCAGAATGCGCAAGCCAA
GGATCGACCCGACCTCCCATGCATGCTACCGATCCTACTGTCGCAAACCTCGATCCGGTCTGATC
TTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACAAAATGAGCGCGCGGGTG
Found at i:36058782 original size:26 final size:26
Alignment explanation
Indices: 36058738--36058790 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36058728 CTGGTCTGAT
* **
36058738 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAAAAAACTCCGTATG
36058764 CTTAGACTGGGAAAAAACTCCGTATG
1 CTTAGACTGGGAAAAAACTCCGTATG
36058790 C
1 C
36058791 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAAAACTCCGTATG
Found at i:36059266 original size:26 final size:26
Alignment explanation
Indices: 36059237--36059288 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
36059227 CCTGTCCAAT
*
36059237 CTTAGGCTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
36059263 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
36059289 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:36059374 original size:500 final size:501
Alignment explanation
Indices: 36058380--36059397 Score: 1225
Period size: 500 Copynumber: 2.0 Consensus size: 501
36058370 CTCCCATGCA
* * ** * * *
36058380 TGCTGCCGATCCTGCTGTCGTAACCCTTGGTCCGGTTCGATCTTAGACTGGGAGTGAACTTCATA
1 TGCTACCGATCCTGCTGTCGCAACCCTCAGTCCGATTCGATCTAAGACTGGGAATGAACTTCATA
* * * * *
36058445 TGCCTAAGTCAACCCACAAAATGAGCGCGCGGGTGCTGAGCCGGCCGGAGAGGCATAATGCGCAA
66 TGCCTAAGTCAACCCACAAAAGGAACGCGCGGGTACTAAGCCGACCGGAGAGGCATAATGCGCAA
* *
36058510 GCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTATCGGTCTCGCTGTCACAACCCTCGATCCGGC
131 GCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTATCGGTCCCGCTGCCACAACCCTCGATCCGGC
36058575 TAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGC
196 TAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGC
* * * *
36058640 TCAACTGGTCGAAGAGGCAGAATGCGCAAGTCAAGGATCGGCCCGGTCCCCCCTGCATGTTATCG
261 TCAACTGATCGAAGAGGCAGAATGCGCAAGTCAAGGATCGGCCCGATCCCCCCTGCATGCTACCG
** *
36058705 ATCCTACTGTCGCAAACCTCGATCTGGTCTGATCTTAGACTGTGAATGAACTCCGTATGCTTAGA
326 ATCCTACTGTCGCAAACCTCGATCTGGTCCAATCTTAGACTGTGAATGAACTCCATATGCTTAGA
* * * *
36058770 CTGGGAAAAAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAGTAGACCG
391 CTGGGAAAAAACTCCATATGCCTAAGCTAACCCACGAAAAGAGCGTGCGAGCGCTCAGCAGACCG
* ** * * *
36058835 AAGAGGCAGAATGTGCAAGTCGAGATCGAATCGGTCCCCC-CTGCG
456 AAGAGGCAGAATGAGCAAACCGAGATCGAACCAGTCCCCCTCTACG
* *
36058880 TGCTATCGATCCTGCTGTCGCAACCCTCAGTCCGATCTCG-TCTAAGACTGGGAATGAAC-TCTG
1 TGCTACCGATCCTGCTGTCGCAACCCTCAGTCCGAT-TCGATCTAAGACTGGGAATGAACTTC-A
* * ** *
36058943 TATGCCTAAGTCAACCCACGAAAGGAATGTTCGGGTACTAAGCCGACCGGAGAGGCATAATGTGC
64 TATGCCTAAGTCAACCCACAAAAGGAACGCGCGGGTACTAAGCCGACCGGAGAGGCATAATGCGC
* * * * *
36059008 AAGCTAGGGATCGGCCCGATCCCCCTTTGCGTGCTGTCGGTCCCGCTGCCGCAACCCTCGGTCCG
129 AAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTATCGGTCCCGCTGCCACAACCCTCGATCCG
* * * * *
36059073 GCTGGGGCTTAGACATTGATTGAACTCCCTATGCTTAAGCCAACCCATGAAACAGGCGTGCGGGC
194 GCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGC
* *** *
36059138 GCTC-AGTCGATC-AGAGAGGCAGAATGCGCAAGTTGGGGATCGGCCCGAT-CCCCCTGCGTGCT
259 GCTCAACT-GATCGA-AGAGGCAGAATGCGCAAGTCAAGGATCGGCCCGATCCCCCCTGCATGCT
* * * * *
36059200 GCCGATCCTACTG-CTGCAAGCCTTGGTCCT-GTCCAATCTTAGGCTAG-GAATGAACTCCATAT
322 ACCGATCCTACTGTC-GCAAACCTCGAT-CTGGTCCAATCTTAGACT-GTGAATGAACTCCATAT
* ** *
36059262 GCTTAGACTGGGGATGAACTCCATATGGCTAAG-TCAACCCACGAAAAGAGCGT-CTGAGCGCTC
384 GCTTAGACTGGGAAAAAACTCCATATGCCTAAGCT-AACCCACGAAAAGAGCGTGC-GAGCGCTC
* * * * *
36059325 AGCCA-ATCGGAGAGGCATAATGAGCAAACCGAGGATC-AGCCCAGTCCCCCTTTACG
447 AG-CAGACCGAAGAGGCAGAATGAGCAAACCGA-GATCGA-ACCAGTCCCCCTCTACG
*
36059381 TGCTACCGATCCAGCTG
1 TGCTACCGATCCTGCTG
36059398 CCGGTCCTAC
Statistics
Matches: 436, Mismatches: 69, Indels: 25
0.82 0.13 0.05
Matches are distributed among these distances:
498 3 0.01
499 138 0.32
500 274 0.63
501 21 0.05
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (501 bp):
TGCTACCGATCCTGCTGTCGCAACCCTCAGTCCGATTCGATCTAAGACTGGGAATGAACTTCATA
TGCCTAAGTCAACCCACAAAAGGAACGCGCGGGTACTAAGCCGACCGGAGAGGCATAATGCGCAA
GCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTATCGGTCCCGCTGCCACAACCCTCGATCCGGC
TAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGC
TCAACTGATCGAAGAGGCAGAATGCGCAAGTCAAGGATCGGCCCGATCCCCCCTGCATGCTACCG
ATCCTACTGTCGCAAACCTCGATCTGGTCCAATCTTAGACTGTGAATGAACTCCATATGCTTAGA
CTGGGAAAAAACTCCATATGCCTAAGCTAACCCACGAAAAGAGCGTGCGAGCGCTCAGCAGACCG
AAGAGGCAGAATGAGCAAACCGAGATCGAACCAGTCCCCCTCTACG
Found at i:36059621 original size:26 final size:26
Alignment explanation
Indices: 36059592--36059644 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36059582 CCGGTCCGAT
*
36059592 CTTAGATTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
36059618 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
36059644 C
1 C
36059645 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:36060195 original size:11 final size:11
Alignment explanation
Indices: 36060179--36060209 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
36060169 GCGCACACCC
36060179 CCGACGATGCT
1 CCGACGATGCT
36060190 CCGACGATGCT
1 CCGACGATGCT
*
36060201 CCGATGATG
1 CCGACGATG
36060210 GTGCCCTGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.19, C:0.32, G:0.29, T:0.19
Consensus pattern (11 bp):
CCGACGATGCT
Found at i:36060807 original size:26 final size:26
Alignment explanation
Indices: 36060778--36060830 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36060768 TCGATTCGAT
*
36060778 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
36060804 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
36060830 C
1 C
36060831 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:36061316 original size:355 final size:353
Alignment explanation
Indices: 36060596--36061300 Score: 811
Period size: 355 Copynumber: 2.0 Consensus size: 353
36060586 CGTCCCGTTG
* * *
36060596 CCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * ** *
36060661 AAAATAGGTGTGCGGGTGCTCAGCCGGCCGGAGCAGCAGAATGCATAAGCCGAGGATCGACCTGG
66 AAAATAGGCGTGCGAGCCCTCAGCCGGCCGAAGCAGCAGAATGCATAAGCCGAGGATCGACCTGG
* * * * *
36060726 TCCCACCTGCGTGCTACAGATCCTGCTACCGTAACCCTCGATTCGATTCGATCTTAGACTAGGAA
131 TCCCACCTACGTGCTACAGATCCTGATAACG-AACCCTCGATCCAATTCGATCTTAGACTAGGAA
* * * * *
36060791 TGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAATCCATGAAACGAGCGT
195 TGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGT
* * * * * *
36060856 GCGGGCGCTCAGCCGACCGGATAGGCATAATACGCAAGTCGGGATCAGCCCGATCACCCTCTGTG
260 GCGGGCACTCAACCGACCAGAAAGGCAGAATACGCAAGCCGGGATCAGCCCGATCACCCTCTGTG
* *
36060921 TGCTGCCGATCCCGTTGCTGTTCTTGCTA
325 TGCTGCCGATCCCGCTGCTGTGCTTGCTA
*
36060950 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* *
36061015 GAAAT-GAGCGTGCGAGCCCTCAGCCGGCCGAAG-AGGCAGAATGCGTAAGCC-AGGGATCGATC
66 AAAATAG-GCGTGCGAGCCCTCAGCCGGCCGAAGCA-GCAGAATGCATAAGCCGA-GGATCGA-C
*
36061077 C-GGTCCC-CCTTTACGTGCTACCGATCCTAGTATAAC-AACCCTC-AGTCCAATTCGATCTTAG
127 CTGGTCCCACC--TACGTGCTACAGATCCT-G-ATAACGAACCCTCGA-TCCAATTCGATCTTAG
* * * *
36061138 ACTGGGAATGAAC-TCTGTATGGTTAGACAT-GGAATGAACTTCGTATGCTTAAGCCAACCCACG
187 ACTAGGAATGAACTTC-GTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * ** * *
36061201 AAACGAACGTGCGGGCACTCAATCGATCAGAAAGGTAGAATGTGCAAGCCAGGGATC-GACCTGG
250 AAACGAACGTGCGGGCACTCAACCGACCAGAAAGGCAGAATACGCAAGCC-GGGATCAG-CCCGA
* *
36061265 TCCCCCT-TGTGTGCTGCCGATCCTGCTGCTGGTGCT
313 TCACCCTCTGTGTGCTGCCGATCCCGCTGCT-GTGCT
36061301 GCTGCTGTAA
Statistics
Matches: 294, Mismatches: 43, Indels: 26
0.81 0.12 0.07
Matches are distributed among these distances:
353 5 0.02
354 117 0.40
355 148 0.50
356 21 0.07
357 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (353 bp):
CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
AAAATAGGCGTGCGAGCCCTCAGCCGGCCGAAGCAGCAGAATGCATAAGCCGAGGATCGACCTGG
TCCCACCTACGTGCTACAGATCCTGATAACGAACCCTCGATCCAATTCGATCTTAGACTAGGAAT
GAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTG
CGGGCACTCAACCGACCAGAAAGGCAGAATACGCAAGCCGGGATCAGCCCGATCACCCTCTGTGT
GCTGCCGATCCCGCTGCTGTGCTTGCTA
Found at i:36063146 original size:154 final size:154
Alignment explanation
Indices: 36062866--36063179 Score: 610
Period size: 154 Copynumber: 2.0 Consensus size: 154
36062856 TTAACTTTGG
36062866 GAGTGGGGGAAAGATGACTAGGTTGGACCTACCTTCAGTGGGGGATCAGACAGGAGGTCCTTTGG
1 GAGTGGGGGAAAGATGACTAGGTTGGACCTACCTTCAGTGGGGGATCAGACAGGAGGTCCTTTGG
*
36062931 TCGAGATAGCACCCAACCCAAAACAAGCAACGCAATGATTTTCAAGCCTAGGCAACTGCTAACTT
66 TCGAGATAGCACCCAACCCAAAACAAGCAACGCAATGATTTTCAAGCCTAGGCAACCGCTAACTT
36062996 GCTTTCTTTGCAAGGGGCCGCATC
131 GCTTTCTTTGCAAGGGGCCGCATC
36063020 GAGTGGGGGAAAGATGACTAGGTTGGACCTACCTTCAGTGGGGGATCAGACAGGAGGTCCTTTGG
1 GAGTGGGGGAAAGATGACTAGGTTGGACCTACCTTCAGTGGGGGATCAGACAGGAGGTCCTTTGG
*
36063085 TCGAGATAGCACCCAACCCAAAACAAGCAACGCAGTGATTTTCAAGCCTAGGCAACCGCTAACTT
66 TCGAGATAGCACCCAACCCAAAACAAGCAACGCAATGATTTTCAAGCCTAGGCAACCGCTAACTT
36063150 GCTTTCTTTGCAAGGGGCCGCATC
131 GCTTTCTTTGCAAGGGGCCGCATC
36063174 GAGTGG
1 GAGTGG
36063180 CTAAATGCCC
Statistics
Matches: 158, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
154 158 1.00
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (154 bp):
GAGTGGGGGAAAGATGACTAGGTTGGACCTACCTTCAGTGGGGGATCAGACAGGAGGTCCTTTGG
TCGAGATAGCACCCAACCCAAAACAAGCAACGCAATGATTTTCAAGCCTAGGCAACCGCTAACTT
GCTTTCTTTGCAAGGGGCCGCATC
Found at i:36068755 original size:159 final size:159
Alignment explanation
Indices: 36068383--36068767 Score: 406
Period size: 158 Copynumber: 2.4 Consensus size: 159
36068373 GGCTCAAAAT
*
36068383 CTTAGAC-TGGGAATGAACTCTG-TATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGTGTTCA
1 CTTAGACATGGGAATGAACTC-GCTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGTTCA
* * ** * *
36068446 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTGTCGATC
65 GCCGGCCGAAGAGGCAGAATGCAAAAGCCGGGGATCGACCCGATCCCCCCTACATGCTGCCGATC
* * * * *
36068511 CTGCTGTCACAACCCTTGGTCCAGTCTGAT
130 CCGCTGCCACAACCCTTGATCCAGGCTGAG
* * * * * *
36068541 CTTACA-ATGGGAATGAACTCCGC-ATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCGTTGA
1 CTTAGACATGGGAATGAACT-CGCTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGTTCA
* * * * *
36068604 GCCGGCCGAAGAGGCATAATGCAAAAGCTGGGGATCGATCTGATCCCCCTCTACGTGCTGCC-AG
65 GCCGGCCGAAGAGGCAGAATGCAAAAGCCGGGGATCGACCCGATCCCCC-CTACATGCTGCCGA-
* *
36068668 TCCCGCTGCCACAACCCTTGAT-CTGGCTGGGG
128 TCCCGCTGCCACAACCCTTGATCCAGGCT-GAG
* * ** *
36068700 CTTAGACAT-GGAATGAACTCGCTACGCCTAAGCCAACCCACGAAACGAATGTGCGGGCGCTCAG
1 CTTAGACATGGGAATGAACTCGCTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGTTCAG
36068764 CCGG
66 CCGG
36068768 ACGGAGACGT
Statistics
Matches: 184, Mismatches: 35, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
158 101 0.55
159 81 0.44
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGGAATGAACTCGCTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGTTCAG
CCGGCCGAAGAGGCAGAATGCAAAAGCCGGGGATCGACCCGATCCCCCCTACATGCTGCCGATCC
CGCTGCCACAACCCTTGATCCAGGCTGAG
Found at i:36068886 original size:26 final size:26
Alignment explanation
Indices: 36068857--36068909 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36068847 CCAGTCCGAT
*
36068857 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
36068883 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
36068909 C
1 C
36068910 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:36069927 original size:182 final size:189
Alignment explanation
Indices: 36069706--36070175 Score: 512
Period size: 196 Copynumber: 2.5 Consensus size: 189
36069696 TCCGACTGGG
* * *
36069706 GCTTAGAGATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAG
** *
36069771 TCGGCCAGAGAGGCAGAATGCGTAAGTC-GGGATCGG-CTCGA-TCCCC-C-CTG-C-T-TGCTG
66 TCGGCC-GAGAGGCAGAATGCACAAGCCGGGGAT-GGACTCGAGTCCCCGCACTGTCATCTGCTG
* *
36069828 C-GGATCCTACTGTCGCAACCCTC-AGT-CGATCCGATCTTAGACTGGGAATGAACTTCATAT
129 CTGG-TCCTACTATCGCAACCCTCGA-TCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
* * * * * *
36069888 GTTTAGACATGGAATGAACTCCGTATACTTAAGCCAACCCACGAAACGAGCGTATGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAG
* * *
36069953 CCGGTCGCTGAGGCAGAATGCACAAGCCGGGGATGGACTCGATGTCCCCTGCATGCTGTCGATCC
66 TCGGCCG-AGAGGCAGAATGCACAAGCCGGGGATGGACTCGA-GTCCCC-GCA--CTGTC-AT-C
* * * * *
36070018 TGCTGCTGGTCCTACTATCGTAACCCTCGATCCGGTCCGATCTTATACTGGGAATGAAGTCCGTA
124 TGCTGCTGGTCCTACTATCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATA
36070083 T
189 T
* * * *
36070084 GCTTAGACATGGAATGAACTCCATATGCTTAAGCTAGCCAATGAAATGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAG
*
36070149 TCGGGCGGAGAGGCAGAATGCACAAGC
66 TC-GGCCGAGAGGCAGAATGCACAAGC
36070176 AGGTGATCGA
Statistics
Matches: 233, Mismatches: 36, Indels: 24
0.80 0.12 0.08
Matches are distributed among these distances:
181 1 0.00
182 78 0.33
183 10 0.04
185 5 0.02
187 1 0.00
190 3 0.01
191 1 0.00
193 1 0.00
195 24 0.10
196 106 0.45
197 3 0.01
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.21
Consensus pattern (189 bp):
GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAG
TCGGCCGAGAGGCAGAATGCACAAGCCGGGGATGGACTCGAGTCCCCGCACTGTCATCTGCTGCT
GGTCCTACTATCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
Found at i:36070216 original size:196 final size:195
Alignment explanation
Indices: 36069823--36070217 Score: 456
Period size: 196 Copynumber: 2.0 Consensus size: 195
36069813 CCCCCCTGCT
* *
36069823 TGCTGCGGATCCTACTGTCGCAACCCTCAGTCGATCCGATCTTAGACTGGGAATGAACTTCATAT
1 TGCTGCGGATCCTACTATCGCAACCCTCAGTCGATCCGATCTTAGACTGGGAATGAACTCCATAT
* * * * *
36069888 GTTTAGACATGGAATGAACTCCGTATACTTAAGCCAACCCACGAAACGAGCGTATGGGCGCTTAG
66 GCTTAGACATGGAATGAACTCCATATACTTAAGCCAACCAACGAAACGAGCGTACGGGCGCTCAG
* * * * * * *
36069953 CCGGTCGCTGAGGCAGAATGCACAAGCCGGGGATGGACTCGATGTCCCCTGCATGCTGTCGATCC
131 CCGGGCGCAGAGGCAGAATGCACAAGCAGGGGATCGACTCGATGTCCCCTACATGCTATCAATCC
* * * * *
36070018 TGCTGCTGG-TCCTACTATCGTAACCCTC-GATCCGGTCCGATCTTATACTGGGAATGAAGTCCG
1 TGCTGC-GGATCCTACTATCGCAACCCTCAG-T-CGATCCGATCTTAGACTGGGAATGAACTCCA
* * * * *
36070081 TATGCTTAGACATGGAATGAACTCCATATGCTTAAGCTAGCCAATGAAATGAGCGTACGGGCGCT
63 TATGCTTAGACATGGAATGAACTCCATATACTTAAGCCAACCAACGAAACGAGCGTACGGGCGCT
* * * * *
36070146 CAGTCGGGCGGAGAGGCAGAATGCACAAGCAGGTGATCGAC-C-CTGTCCCCCCTACGTGCTATC
128 CAGCCGGGCGCAGAGGCAGAATGCACAAGCAGGGGATCGACTCGATGT--CCCCTACATGCTATC
36070209 AATCC
191 AATCC
36070214 TGCT
1 TGCT
36070218 ATCGCAACCC
Statistics
Matches: 166, Mismatches: 29, Indels: 9
0.81 0.14 0.04
Matches are distributed among these distances:
194 4 0.02
195 25 0.15
196 137 0.83
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (195 bp):
TGCTGCGGATCCTACTATCGCAACCCTCAGTCGATCCGATCTTAGACTGGGAATGAACTCCATAT
GCTTAGACATGGAATGAACTCCATATACTTAAGCCAACCAACGAAACGAGCGTACGGGCGCTCAG
CCGGGCGCAGAGGCAGAATGCACAAGCAGGGGATCGACTCGATGTCCCCTACATGCTATCAATCC
Found at i:36070562 original size:158 final size:157
Alignment explanation
Indices: 36070085--36070584 Score: 384
Period size: 158 Copynumber: 3.2 Consensus size: 157
36070075 AGTCCGTATG
* * * * * * * * * * *
36070085 CTTAGACATGGAATGAACTCCATATGCTTAAGCTAGCCAATGAAATGAGCGTACGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAAGGACCATGCGGGCGCTCAGC
** * * * *
36070150 CGGGCGGAGAGGCAGAATGCACAAG-CAGGTGATC-GACCCTG-TCCCCCCTACGTGCTATCAAT
66 CGATCGGAGAGGCAGAATG-GCAAGTCAAG-GATCAG-CCC-GATCCCCCCTGCGTGCTATCGAT
* * * * **
36070212 CCTGCTATCGCAACCCTCGATCCGATCCAAT
127 CCTGCTGTCGCAACCCTCGGTCTGGTCTGAT
* * * * * *
36070243 CTTAGAC-TAGAATGAGCTCCGTATGCCTAAGTCAACCCATAAAATGACCATGCGGGCGTTGAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAAGGACCATGCGGGCGCTCAGC
* * * * * *
36070307 CGATCGGAGAGGCATAATGGCAAGTCAAGGATCGGCCCGATCCCTCTCTGCGTGCTACCGGTCCC
66 CGATCGGAGAGGCAGAATGGCAAGTCAAGGATCAGCCCGATCCC-CCCTGCGTGCTATCGATCCT
* * * * **
36070372 GCTGCCACAACCCTTGGTCT-GACTGGGG
130 GCTGTCGCAACCCTCGGTCTGGTCT-GAT
* * * ** * *
36070400 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAGACGGA-TGTGTGGGTGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT-AAAAGGACCATGCGGGCGCTCAG
* * *
36070464 CC-AGTCGGAGAGGTAGAATGCGTAAGTCAGGGATCAGCCCGATCCCCCCTGCGTGCTATCGATC
65 CCGA-TCGGAGAGGCAGAATG-GCAAGTCAAGGATCAGCCCGATCCCCCCTGCGTGCTATCGATC
*
36070528 CTGCTGTCGCAACACTCGGTCTGGTCTGAT
128 CTGCTGTCGCAACCCTCGGTCTGGTCTGAT
* *
36070558 CTTAGATAGGGAATGAACTCCGTATGC
1 CTTAGACATGGAATGAACTCCGTATGC
36070585 TTAGATTGGG
Statistics
Matches: 262, Mismatches: 70, Indels: 20
0.74 0.20 0.06
Matches are distributed among these distances:
155 1 0.00
156 16 0.06
157 98 0.37
158 118 0.45
159 29 0.11
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAAGGACCATGCGGGCGCTCAGC
CGATCGGAGAGGCAGAATGGCAAGTCAAGGATCAGCCCGATCCCCCCTGCGTGCTATCGATCCTG
CTGTCGCAACCCTCGGTCTGGTCTGAT
Found at i:36070599 original size:26 final size:26
Alignment explanation
Indices: 36070558--36070610 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36070548 CTGGTCTGAT
36070558 CTTAGATAGGGAATGAACTCCGTATG
1 CTTAGATAGGGAATGAACTCCGTATG
* * *
36070584 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGATAGGGAATGAACTCCGTATG
36070610 C
1 C
36070611 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGATAGGGAATGAACTCCGTATG
Found at i:36070713 original size:184 final size:186
Alignment explanation
Indices: 36070399--36070964 Score: 567
Period size: 196 Copynumber: 3.0 Consensus size: 186
36070389 TCTGACTGGG
** * * *
36070399 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAGACG-GATGTGTGGGTGCTCA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAG-TGTGCGGGCGCTCA
* * * * * *
36070463 GCC-AGTCGGAGAGGTAGAATGCGTAAG-TCAGGGATCAGCCCGATCCCCCCTGCGTGCT-ATCG
65 GCCGA-TCGGAGAGGCAGAATGCGCAAGCTGA-GGATCGGCCAGGTCCCCCCTGCGTGCTGATCG
* * * *
36070525 ATCCTGCTGTC-GCAACACTCGGTCTGGTCTGATCTTAGATAGGGAATGAACTCCGTAT
128 ATCCTGCTGTCTGCAACCCTCGATCCGGTCTGATCTTAGATTGGGAATGAACTCCGTAT
* * *
36070583 GCTTAGA-TTGGGGATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCA
* * * * * *
36070647 GCCGACCGGAGAGGCAGAATGTGCAAGCTGAGGATCGGCCTGGTCCCACTTGTGTGCTGA-CGAT
65 GCCGATCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCAGGTCCCCCCTGCGTGCTGATCGAT
*
36070711 CCTGCTGCTGGTCCTGCTATCGTAACCCTCGATCCGGTCTGATCTTAGATTGGGAATGAACTCCA
130 -C--CTGCT-GT-CTG----C--AACCCTCGATCCGGTCTGATCTTAGATTGGGAATGAACTCCG
*
36070776 TAC
184 TAT
* ** ** *
36070779 ACTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATAAGTGTGCAGGCAG-TCA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGC-GCTCA
* * * *
36070843 GCCGGTCGGAAAGGCAGAATGCACAAGCTGGGGATCGGCCAGGTCCCCCCTGCGTGC-GATCGAT
65 GCCGATCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCAGGTCCCCCCTGCGTGCTGATCGAT
* * *
36070907 CCTACTG-CTGCAACCCTCAATCCGGTCCGATCTTAGATTGGGAATGAACTCCGTAT
130 CCTGCTGTCTGCAACCCTCGATCCGGTCTGATCTTAGATTGGGAATGAACTCCGTAT
36070963 GC
1 GC
36070965 CTAAGTCAAC
Statistics
Matches: 312, Mismatches: 50, Indels: 40
0.78 0.12 0.10
Matches are distributed among these distances:
183 1 0.00
184 140 0.45
185 6 0.02
186 1 0.00
187 5 0.02
188 2 0.01
189 1 0.00
190 4 0.01
192 1 0.00
193 4 0.01
194 1 0.00
195 3 0.01
196 141 0.45
197 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.22
Consensus pattern (186 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
CCGATCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCAGGTCCCCCCTGCGTGCTGATCGATC
CTGCTGTCTGCAACCCTCGATCCGGTCTGATCTTAGATTGGGAATGAACTCCGTAT
Found at i:36071127 original size:159 final size:158
Alignment explanation
Indices: 36070780--36071244 Score: 375
Period size: 158 Copynumber: 2.9 Consensus size: 158
36070770 ACTCCATACA
* ** * ** * * * *
36070780 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATAAGTGTGCAGGCAGTCAGC
1 CTTAGACATGGATTGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAAC
* * * * * * * *
36070845 CGGTCGGAAAGGCAGAATGC-ACAAGCTGGGGATCGGCCAGGTCCCCCCTGCGTGC-GATCGATC
66 CGGTCGGAGAGGCAGAATGCGA-AAGCCGAGGATCAGCCTGATCCCCCTTACGTGCTG-TCGATC
** * ** ** * **
36070908 CTACTGCTGCAACCCTCAATCCGG-TCCGAT
129 CCGCTACCACAACCCTCGGTCCGGCT-GGGG
* * * * * * * *
36070938 CTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAATGAGTGTGCAGGCACT-AA
1 CTTAGACAT-GGATTGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAA
* * * *
36071001 GCCGGTCGGAGAGGCATAATGCGAAAGCC-AGGGATCAGCCTGATGCCTCTCTATGTGCTGTCGA
65 -CCGGTCGGAGAGGCAGAATGCGAAAGCCGA-GGATCAGCCTGATCCCCCT-TACGTGCTGTCGA
36071065 TCCCGCTACCACAACCCTCGGTCCGGCTGGGG
127 TCCCGCTACCACAACCCTCGGTCCGGCTGGGG
* *
36071097 CTTAGACATGGATTGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACAGGCACTCAAC
1 CTTAGACATGGATTGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAAC
* * * * * * *
36071162 CGGTCGGAGAGGTAGAATGTGCAAGCCGAGGATCGGCCTGGTCCCCCTTGCGTGCTGTCGATCCT
66 CGGTCGGAGAGGCAGAATGCGAAAGCCGAGGATCAGCCTGATCCCCCTTACGTGCTGTCGATCCC
*
36071227 GCTGCCACAACCCTCGGT
131 GCTACCACAACCCTCGGT
36071245 TGGTTCGATC
Statistics
Matches: 245, Mismatches: 52, Indels: 20
0.77 0.16 0.06
Matches are distributed among these distances:
157 2 0.01
158 119 0.49
159 118 0.48
160 6 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGATTGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAAC
CGGTCGGAGAGGCAGAATGCGAAAGCCGAGGATCAGCCTGATCCCCCTTACGTGCTGTCGATCCC
GCTACCACAACCCTCGGTCCGGCTGGGG
Found at i:36071290 original size:26 final size:26
Alignment explanation
Indices: 36071254--36071306 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
36071244 TTGGTTCGAT
36071254 CTTACACTGGGAATAAACTCCGTATG
1 CTTACACTGGGAATAAACTCCGTATG
* * * *
36071280 CTTAGACTGGGGATGAACTCTGTATG
1 CTTACACTGGGAATAAACTCCGTATG
36071306 C
1 C
36071307 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATAAACTCCGTATG
Found at i:36071733 original size:159 final size:157
Alignment explanation
Indices: 36071425--36072064 Score: 567
Period size: 159 Copynumber: 4.0 Consensus size: 157
36071415 GCCAATCCCC
* * * * * ** *
36071425 CTGTCGGTCCTACTGCCACAACCCTCCTTTCGACTGGGTCTTAGACATGGAATGTACTTTGTATT
1 CTGTC-GTCCCACTGCCACAACCCTCGTCT-GACTGGGGCTTAGACATGGAATGAACTCCGTATG
* * * ** * * *
36071490 CCTAAACCAACCCACGAAACGAGCATGCGGGTGCTGAGCTGACTGGAGAGGCATAATGCACAAGC
64 CCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTGAGCCAACCGGAGAGGCAGAATGCGCAAGC
36071555 CAGGGATCGGCCCGATCCCCCTCTGCGTG
129 CAGGGATCGGCCCGATCCCCCTCTGCGTG
* * *
36071584 CTGCCTGTCCCGCTGCCACAACCCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATG
1 CTGTC-GTCCCACTGCCACAACCCTC-GTCTGACTGGGGCTTAGACATGGAATGAACTCCGTATG
* * * ** *
36071649 CCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTTAACCGGCCGGAGAGGTAGAATGCGCAAGC
64 CCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTGAGCCAACCGGAGAGGCAGAATGCGCAAGC
* * *
36071714 CGGGGATCGACCCGGTCCCCC-CTGCGTG
129 CAGGGATCGGCCCGATCCCCCTCTGCGTG
* * * * *** * *
36071742 CTGTCGATCCTACTGCCACAACCCTTTGTCCGGTCT-AATCTTAGA-TTAGGAATGAACTCCTTA
1 CTGTCG-TCCCACTGCCACAACCC-TCGT-CTGACTGGGGCTTAGACAT-GGAATGAACTCCGTA
* ** * ** * *
36071805 TGCCTAAGTCAACCCATGAAACGAGCGTGTCAGCGT--TGAGCCAGTCGGAGAGGCATAATGCGT
62 TGCCTAAGCCAACCCACAAAACGAGCGTG-C-GGGTGCTGAGCCAACCGGAGAGGCAGAATGCGC
* *
36071868 AAGCC-GAGGATTGGCCCGATCCCCCTCTGCATG
125 AAGCCAG-GGATCGGCCCGATCCCCCTCTGCGTG
* ** * * *
36071901 CTGTCGGTCCCACTGCCACAACCCTCGATCCGGTTGGGGCTTTGACATGGAATTAACTCTGTATG
1 CTGTC-GTCCCACTGCCACAACCCTCG-TCTGACTGGGGCTTAGACATGGAATGAACTCCGTATG
* * * * *
36071966 CCTAAGCCAACCCACAAAATG-GATGTGCGGGTGCTCAGCCAACCGAAGAGGCAGAATGCGTAAG
64 CCTAAGCCAACCCACAAAACGAG-CGTGCGGGTGCTGAGCCAACCGGAGAGGCAGAATGCGCAAG
*
36072030 CCAGGGATCGGCTCGATCCCCCT-TGCGTG
128 CCAGGGATCGGCCCGATCCCCCTCTGCGTG
36072059 CTGTCG
1 CTGTCG
36072065 ATCCTGCCAC
Statistics
Matches: 383, Mismatches: 81, Indels: 36
0.77 0.16 0.07
Matches are distributed among these distances:
157 7 0.02
158 130 0.34
159 238 0.62
160 8 0.02
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.21
Consensus pattern (157 bp):
CTGTCGTCCCACTGCCACAACCCTCGTCTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCC
TAAGCCAACCCACAAAACGAGCGTGCGGGTGCTGAGCCAACCGGAGAGGCAGAATGCGCAAGCCA
GGGATCGGCCCGATCCCCCTCTGCGTG
Found at i:36072024 original size:317 final size:317
Alignment explanation
Indices: 36071534--36072124 Score: 785
Period size: 317 Copynumber: 1.9 Consensus size: 317
36071524 TGAGCTGACT
* * *
36071534 GGAGAGGCATAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCTGTCCCGCTG
1 GGAGAGGCATAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTGCATGCTGCCGGTCCCACTG
*
36071599 CCACAACCCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
66 CCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * ** * * * *
36071664 AAAACGGGCGTGCGGGTGCTTAACCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGG
131 AAAACGGACGTGCGGGTGCTCAACCAACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGA
** ** *
36071729 TCCCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCTTTGTCCGG-TCTAATCTTAGATTAG-G
196 TCCCCCCTGCGTGCTGTCGATCCTACCACCACAACCCTCGGTCCGGTTC-AATCTTAGACT-GTG
*
36071792 AATGAACTCCTTATGCCTAAGTCAACCCATGAAACGAGCGTGTCAGCGTTGAGCCAGTC
259 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTCAGCGTTGAGCCAGTC
** * *
36071851 GGAGAGGCATAATGCGTAAGCC-GAGGATTGGCCCGATCCCCCTCTGCATGCTGTCGGTCCCACT
1 GGAGAGGCATAATGCACAAGCCAG-GGATCGGCCCGATCCCCCTCTGCATGCTGCCGGTCCCACT
** * * **
36071915 GCCACAACCCTC-GATCCGGTTGGGGCTTTGACATGGAATTAACTCTGTATGCCTAAGCCAACCC
65 GCCACAACCCTCAG-TCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* * * * * *
36071979 ACAAAATGGATGTGCGGGTGCTCAGCCAACCGAAGAGGCAGAATGCGTAAGCCAGGGATCGGCTC
129 ACAAAACGGACGTGCGGGTGCTCAACCAACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCC
* * *
36072044 GATCCCCCTTGCGTGCTGTCGATCCTGCCACCACAACCCTCGGTCCGGTTCGATCTTAGACTGTG
194 GATCCCCCCTGCGTGCTGTCGATCCTACCACCACAACCCTCGGTCCGGTTCAATCTTAGACTGTG
36072109 AATGAACTCCGTATGC
259 AATGAACTCCGTATGC
36072125 TTAGACTGGG
Statistics
Matches: 233, Mismatches: 37, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
316 3 0.01
317 228 0.98
318 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (317 bp):
GGAGAGGCATAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTGCATGCTGCCGGTCCCACTG
CCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
AAAACGGACGTGCGGGTGCTCAACCAACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGA
TCCCCCCTGCGTGCTGTCGATCCTACCACCACAACCCTCGGTCCGGTTCAATCTTAGACTGTGAA
TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTCAGCGTTGAGCCAGTC
Found at i:36072127 original size:26 final size:26
Alignment explanation
Indices: 36072098--36072150 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36072088 CCGGTTCGAT
*
36072098 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
36072124 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36072150 C
1 C
36072151 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36073888 original size:26 final size:26
Alignment explanation
Indices: 36073859--36073911 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
36073849 TTGATCCGAT
36073859 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
36073885 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
36073911 C
1 C
36073912 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:36074606 original size:26 final size:26
Alignment explanation
Indices: 36074565--36074614 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
36074555 CTAGTCTGAT
36074565 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
36074591 CTTAGACTAGGG-ATGAACTCCGTA
1 CTTAGACT-GGGAATGAACTCCGTA
36074615 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:36074966 original size:26 final size:26
Alignment explanation
Indices: 36074930--36074982 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36074920 CCGGTTCGAT
*
36074930 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
36074956 CTTAGAGTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
36074982 C
1 C
36074983 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.30, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:36075690 original size:26 final size:26
Alignment explanation
Indices: 36075652--36075704 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36075642 GGCTCAAAAT
36075652 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
36075678 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
36075704 C
1 C
36075705 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:36076204 original size:26 final size:26
Alignment explanation
Indices: 36076152--36076204 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
36076142 CCGATCTGAT
**
36076152 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCACATG
36076178 CTTAGACTAGGG-ATGAACTCCACATG
1 CTTAGACT-GGGAATGAACTCCACATG
36076204 C
1 C
36076205 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:36076598 original size:159 final size:160
Alignment explanation
Indices: 36076325--36076696 Score: 367
Period size: 159 Copynumber: 2.3 Consensus size: 160
36076315 GGTACTACTA
* * * *
36076325 CCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCGGTTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* ** * * **
36076390 GAAATGAGCATGCGGGCGTTGAGCTGACCGAAAAGGCATAATATGCAAGCC-A-GGGATTGGCCC
66 GAAACGAGCATGCGGGCGTCAAGCTGACCGAAAAGGCAGAATACGCAAGCCGAGGGGATCAGCCC
* * *
36076453 GGTCCCCCTCTGTGTGCTGCCGGTCCCGCTG
131 GATCCCCC-CTGTGTGCTACCGATCCCGCTG
* *
36076484 CCACAACCCTCGGTCCGGTTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGGTTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * * * * *
36076549 GAAACGGGCGTGCAGGG-GCTCAATC-GGCCGGAGAGGTAGAATGCGCAAGCCGAGCGGGGATCA
66 GAAACGAGCATGC-GGGCG-TCAAGCTGACCGAAAAGGCAGAATACGCAAGCCGA--GGGGATCA
* * *
36076612 GCTCGATCCCTCCTGTGTGCTACCGATCCTGCTG
127 GCCCGATCCCCCCTGTGTGCTACCGATCCCGCTG
* * * **
36076646 CCGCAACCTTCGGTCCGGTTTGATCTTAGAC-TGGGAATGAACTCCGTATGC
1 CCACAACCCTCGGTCCGGTTAGGGCTTAGACAT-GGAATGAACTCCGTATGC
36076697 TTAGACTGGG
Statistics
Matches: 173, Mismatches: 33, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
159 89 0.51
160 7 0.04
161 1 0.01
162 62 0.36
163 14 0.08
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (160 bp):
CCACAACCCTCGGTCCGGTTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
GAAACGAGCATGCGGGCGTCAAGCTGACCGAAAAGGCAGAATACGCAAGCCGAGGGGATCAGCCC
GATCCCCCCTGTGTGCTACCGATCCCGCTG
Found at i:36076699 original size:26 final size:26
Alignment explanation
Indices: 36076670--36076722 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
36076660 CCGGTTTGAT
36076670 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
36076696 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36076722 C
1 C
36076723 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36077682 original size:12 final size:12
Alignment explanation
Indices: 36077665--36077694 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
36077655 TGAGGGATAG
36077665 GGGGCCAATATA
1 GGGGCCAATATA
36077677 GGGGCCAATATA
1 GGGGCCAATATA
*
36077689 AGGGCC
1 GGGGCC
36077695 GAGTACCAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.20, G:0.37, T:0.13
Consensus pattern (12 bp):
GGGGCCAATATA
Found at i:36078399 original size:26 final size:26
Alignment explanation
Indices: 36078370--36078422 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
36078360 CCGGTCCGAT
36078370 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
36078396 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36078422 C
1 C
36078423 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36078792 original size:120 final size:120
Alignment explanation
Indices: 36078558--36078784 Score: 292
Period size: 120 Copynumber: 1.9 Consensus size: 120
36078548 TCTTACTATG
* * **
36078558 ACAACCCTCGGTCCAGCTGGGGTTTAGACATGGAATGAATTCTGTATGCCTAAGCCAACCCACGA
1 ACAACCCTCGGTCCAGCTGGGGTTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
* * * ** *
36078623 AATGAGCATGTAGGCACTGAGCCGACCGGAGAGGCATAATGCACAAACCGCTGTC
66 AATGAGCATGCAGGCACTCAGCCGACCGAAGAACCAAAATGCACAAACCGCTGTC
* *
36078678 ACAACCCTCGGTCCAGCTGGGGTTTAAACATGGAATGAACTCCCTATGCCTAAGCCAATCCATGA
1 ACAACCCTCGGTCCAGCTGGGGTTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
* * * * * *
36078743 AATGGGCGTGCGGGCGCTCAGTCGATCGAAGAACCAAAATGC
66 AATGAGCATGCAGGCACTCAGCCGACCGAAGAACCAAAATGC
36078785 GTAAACCGAG
Statistics
Matches: 89, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
120 89 1.00
ACGTcount: A:0.29, C:0.27, G:0.26, T:0.19
Consensus pattern (120 bp):
ACAACCCTCGGTCCAGCTGGGGTTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
AATGAGCATGCAGGCACTCAGCCGACCGAAGAACCAAAATGCACAAACCGCTGTC
Found at i:36078887 original size:26 final size:26
Alignment explanation
Indices: 36078858--36078910 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
36078848 CTGATCTGAT
36078858 CTTAGACTG-GGAATGAACTCTGTATG
1 CTTAGACTGCGG-ATGAACTCTGTATG
36078884 CTTAGACTGCGGATGAACTCTGTATG
1 CTTAGACTGCGGATGAACTCTGTATG
36078910 C
1 C
36078911 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGCGGATGAACTCTGTATG
Found at i:36079263 original size:26 final size:26
Alignment explanation
Indices: 36079212--36079264 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36079202 CCAGTCCGAT
*
36079212 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
36079238 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
36079264 C
1 C
36079265 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:36080379 original size:26 final size:26
Alignment explanation
Indices: 36080349--36080401 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36080339 GTTGATTTAG
*
36080349 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
36080375 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
36080401 G
1 G
36080402 TAGGATCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:36080565 original size:21 final size:21
Alignment explanation
Indices: 36080539--36080610 Score: 117
Period size: 21 Copynumber: 3.4 Consensus size: 21
36080529 TAAGCCCTAA
*
36080539 CCGGACCGAGGGTTGTGACAG
1 CCGGACCGAGGGTTGTGGCAG
36080560 CCGGACCGAGGGTTGTGGCAG
1 CCGGACCGAGGGTTGTGGCAG
*
36080581 TCGGACCGAGGGTTGTGGCAG
1 CCGGACCGAGGGTTGTGGCAG
*
36080602 CAGGACCGA
1 CCGGACCGA
36080611 TCGGCAGCAA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 47 1.00
ACGTcount: A:0.18, C:0.24, G:0.44, T:0.14
Consensus pattern (21 bp):
CCGGACCGAGGGTTGTGGCAG
Found at i:36086827 original size:26 final size:26
Alignment explanation
Indices: 36086788--36086840 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36086778 GGCTCAAAAT
*
36086788 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTACGTATG
36086814 CTTAGACATG-GAATGAACTACGTATG
1 CTTAGAC-TGAGAATGAACTACGTATG
36086840 C
1 C
36086841 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTACGTATG
Found at i:36087347 original size:157 final size:156
Alignment explanation
Indices: 36086814--36087365 Score: 531
Period size: 159 Copynumber: 3.5 Consensus size: 156
36086804 ACTTCGTATG
* * * *
36086814 CTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCAGC
* * * * * * * *
36086879 CGACTGGAGAGGTAGAATGCGCAAGCCGGGGATTGACTCGGTCCCCCCTACATGCTGTCGATCCT
66 CGACCGGAGAGGCAGAATGTGCAAG-CGAGGATTGGCCCGGT-CCCCCTACGTGCTGCCGATCCT
* *
36086944 GCTACCGCAACCCTTGCT-CTGATCTGAT
129 GCTACCGCAACCCTTGGTCCAGATC-GAT
* * * * * *
36086972 CTTACAC-TAGGAATGAACTCCGTATACATCAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCAG
* * * * * *
36087036 CCGACCGAAGAGGCATAATGTGCAAGCCAGGGATCGGCCCGGTCCCCTTCTATGTGTTGCCGATC
65 CCGACCGGAGAGGCAGAATGTGCAAGCGA-GGATTGGCCCGGTCCCC--CTACGTGCTGCCGATC
* * * ** * *
36087101 CTGCTGCCACAACCCTTAGTCTGGCTGCG-G
127 CTGCTACCGCAACCCTTGGTCCAGAT-CGAT
* * * * * *
36087131 CTTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCAAGAAATAGGTGTGCAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCAGC
* * * *
36087196 CGGCCAGAGAGGCAGAATATGGAAGTCGAGGATTGGCCCGGTCCCCCTACGTGCTGCCGATCCTG
66 CGACCGGAGAGGCAGAATGTGCAAG-CGAGGATTGGCCCGGTCCCCCTACGTGCTGCCGATCCTG
* * *
36087261 CTATCGCAACTCTCGGTCCAG-TCAGAT
130 CTACCGCAACCCTTGGTCCAGATC-GAT
*
36087288 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGCG-AGGGCGCTCA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCA-GGCGCTCA
36087351 GCCGACCGGAGAGGC
64 GCCGACCGGAGAGGC
36087366 CGGTCGGAGA
Statistics
Matches: 313, Mismatches: 69, Indels: 25
0.77 0.17 0.06
Matches are distributed among these distances:
155 1 0.00
156 4 0.01
157 101 0.32
158 86 0.27
159 114 0.36
160 6 0.02
161 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCAGC
CGACCGGAGAGGCAGAATGTGCAAGCGAGGATTGGCCCGGTCCCCCTACGTGCTGCCGATCCTGC
TACCGCAACCCTTGGTCCAGATCGAT
Found at i:36087841 original size:26 final size:26
Alignment explanation
Indices: 36087812--36087864 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
36087802 TCGGTCCAAT
*
36087812 CTTAGAC-TGAGAATTAACTCCATATG
1 CTTAGACATG-GAATGAACTCCATATG
*
36087838 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
36087864 C
1 C
36087865 CAAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:36088673 original size:355 final size:356
Alignment explanation
Indices: 36088149--36088828 Score: 870
Period size: 355 Copynumber: 1.9 Consensus size: 356
36088139 CTCGGTCCAG
* *
36088149 CTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCCACGAAACGGGCGTGCGGGC
1 CTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCCACAAAACGAGCGTGCGGGC
** * * * **
36088214 GCTCAGTCGATCGGAGAGGCAGAATGAGTAAGCTAGGGATCGGCCCAGTCCCCTCTTCATGCTGT
66 GCTCACCCGACCGGAGAGGCAGAATGAGCAAGCTAGGGATCAGCCCAGTCCCCTCTTCATGCTAC
* * * *
36088279 CGATCCTGCTGTCGCAACCCTTATTTCGGACCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
131 CGATCCTGCTGTCGCAACCCTGATTCCAGACCGATCTTAGACTAGGAATGAACTCCGTATGCTTA
* * * ** * * *
36088344 CACCGGGGATAAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGTCGGC
196 CACAGGGAATAAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGAC
* * * * *
36088409 CGGAGAGGCATAATGCGTAAGTCGGGGATCAGCCCGAT-CCCCCTCTGCGTGCTGTCGATCCTGC
261 CGAAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGATCCCCCCT-TACGTGCTATCGATCCTGC
36088473 TGCCGGTCCTACTGGCACAACCCCCAGTCCGA
325 TGCCGGTCCTACTGGCACAACCCCCAGTCCGA
* * *
36088505 CTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CCCACAAAACGAGTGTGCGGGC
1 CTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCCACAAAACGAGCGTGCGGGC
* * * *
36088569 GCTCACCCGGCCGGAGAGGTAGAAT-ACGCAAG-TCAGGGATCAGCCC-GAT-CCCTTTTGCGTG
66 GCTCACCCGACCGGAGAGGCAGAATGA-GCAAGCT-AGGGATCAGCCCAG-TCCCCTCTT-CATG
* * *
36088630 CTACCGATCCTGCTGTTGCAACCCTCGA-TCCAGTCCGATCTTAGACTAGGAATGAACTCTGTAT
127 CTACCGATCCTGCTGTCGCAACCCT-GATTCCAGACCGATCTTAGACTAGGAATGAACTCCGTAT
* * * **
36088694 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGTGCTCAG
191 GCTTACACAGGGAATAAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCACTCAG
* *
36088759 CCGACCGAAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCTATCCCCCCTTACGTGCTATTGATC
256 CCGACCGAAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGATCCCCCCTTACGTGCTATCGATC
36088824 CTGCT
321 CTGCT
36088829 ACCCCAACCC
Statistics
Matches: 275, Mismatches: 43, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
354 9 0.03
355 219 0.80
356 47 0.17
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (356 bp):
CTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCCACAAAACGAGCGTGCGGGC
GCTCACCCGACCGGAGAGGCAGAATGAGCAAGCTAGGGATCAGCCCAGTCCCCTCTTCATGCTAC
CGATCCTGCTGTCGCAACCCTGATTCCAGACCGATCTTAGACTAGGAATGAACTCCGTATGCTTA
CACAGGGAATAAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGAC
CGAAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGATCCCCCCTTACGTGCTATCGATCCTGCT
GCCGGTCCTACTGGCACAACCCCCAGTCCGA
Found at i:36088707 original size:26 final size:26
Alignment explanation
Indices: 36088669--36088721 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36088659 CCAGTCCGAT
*
36088669 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
36088695 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
36088721 C
1 C
36088722 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:36088864 original size:355 final size:353
Alignment explanation
Indices: 36088149--36088912 Score: 817
Period size: 355 Copynumber: 2.2 Consensus size: 353
36088139 CTCGGTCCAG
* *
36088149 CTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCCACGAAACGGGCGTGCGGGC
1 CTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCCACAAAACGAGCGTGCGGGC
** * * * **
36088214 GCTCAGTCGATCGGAGAGGCAGAATGAGTAAGCTAGGGATCGGCCCAGTCCCCTCTTCATGCTGT
66 GCTCACCCGACCGGAGAGGCAGAATGAGCAAGCTAGGGATCAGCCCAGTCCCCTCTTCATGCTAC
* * * *
36088279 CGATCCTGCTGTCGCAACCCTTATTTCGGACCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
131 CGATCCTGCTGTCGCAACCCTGATTCCAGACCGATCTTAGACTAGGAATGAACTCCGTATGCTTA
* * * ** * * *
36088344 CACCGGGGATAAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGTCGGC
196 CACAGGGAATAAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGAC
* * * * *
36088409 CGGAGAGGCATAATGCGTAAGTCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATCCTGCT
261 CGAAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTATCGATCCTGCT
* * * *
36088474 GCCGGTCCTACTGGCACAACCCCCAGTCCGA
326 ACC-G-CCAAC-GCCACAACCCCCAGTCAGA
* * *
36088505 CTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CCCACAAAACGAGTGTGCGGGC
1 CTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCCACAAAACGAGCGTGCGGGC
* * * *
36088569 GCTCACCCGGCCGGAGAGGTAGAAT-ACGCAAG-TCAGGGATCAGCCC-GAT-CCCTTTTGCGTG
66 GCTCACCCGACCGGAGAGGCAGAATGA-GCAAGCT-AGGGATCAGCCCAG-TCCCCTCTT-CATG
* * *
36088630 CTACCGATCCTGCTGTTGCAACCCTCGA-TCCAGTCCGATCTTAGACTAGGAATGAACTCTGTAT
127 CTACCGATCCTGCTGTCGCAACCCT-GATTCCAGACCGATCTTAGACTAGGAATGAACTCCGTAT
* * * **
36088694 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGTGCTCAG
191 GCTTACACAGGGAATAAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCACTCAG
* *
36088759 CCGACCGAAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCTATCCCCC-CTTACGTGCTATTGAT
256 CCGACCGAAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGATCCCCCTC-TACGTGCTATCGAT
* * *
36088823 CCTGCTACC-CCAAC-CCTCAA-TCCCA-TCTGA
320 CCTGCTACCGCCAACGCCACAACCCCCAGTCAGA
** * * *
36088853 -T----CATAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAA-CCGACAAAACGAGCATGCGGG
1 CTGGGGCATAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCCACAAAACGAGCGTGCGGG
36088911 CG
65 CG
36088913 TGGAGCCTAC
Statistics
Matches: 346, Mismatches: 55, Indels: 27
0.81 0.13 0.06
Matches are distributed among these distances:
342 1 0.00
343 51 0.15
347 1 0.00
348 4 0.01
349 4 0.01
350 4 0.01
352 4 0.01
354 10 0.03
355 226 0.65
356 41 0.12
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (353 bp):
CTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCCACAAAACGAGCGTGCGGGC
GCTCACCCGACCGGAGAGGCAGAATGAGCAAGCTAGGGATCAGCCCAGTCCCCTCTTCATGCTAC
CGATCCTGCTGTCGCAACCCTGATTCCAGACCGATCTTAGACTAGGAATGAACTCCGTATGCTTA
CACAGGGAATAAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGAC
CGAAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTATCGATCCTGCT
ACCGCCAACGCCACAACCCCCAGTCAGA
Found at i:36088996 original size:159 final size:159
Alignment explanation
Indices: 36088704--36088996 Score: 329
Period size: 159 Copynumber: 1.8 Consensus size: 159
36088694 GCTTAGACAT
* * * *
36088704 GGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCGAAG
1 GGAATGAACTCCGTATGCCTAAACCAACCCACAAAACGAGCATGCGGGCGCTCAGCCGACAGAAG
* * * * * * *
36088769 AGGCAGAATGCGTAAGCCGGGGATCAGCCCTATCCCCCCTTACGTGCTATTGATCCTGCTACCCC
66 AGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTTACATGCTATCGATCCCGCTACCAC
36088834 AACCCTCAATCCCATCTGATCATAGACTG
131 AACCCTCAATCCCATCTGATCATAGACTG
* ** * * *
36088863 GGAATGAACTCTGTATGCCTAAGTCAACCGACAAAACGAGCATGCGGGCG-TGGAGCCTACTAG-
1 GGAATGAACTCCGTATGCCTAAACCAACCCACAAAACGAGCATGCGGGCGCT-CAGCCGAC-AGA
* * * * * * * *
36088926 AGAGGCATAATGTGCAAGCCAGGGATCGGCCCGATCCCCCTTTGCATGCTGTCGGTCCCGCTGCC
64 AGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTTACATGCTATCGATCCCGCTACC
36088991 ACAACC
129 ACAACC
36088997 ATCGATTTGG
Statistics
Matches: 107, Mismatches: 25, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
158 1 0.01
159 105 0.98
160 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.18
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAACCAACCCACAAAACGAGCATGCGGGCGCTCAGCCGACAGAAG
AGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTTACATGCTATCGATCCCGCTACCAC
AACCCTCAATCCCATCTGATCATAGACTG
Found at i:36089468 original size:857 final size:854
Alignment explanation
Indices: 36087654--36089469 Score: 2127
Period size: 857 Copynumber: 2.1 Consensus size: 854
36087644 AACTCCGTAT
* * * * * *
36087654 GCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACAAGCGTACGGGCATTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCATTCAA
* ** * * *
36087719 TCGGCCGGAGAGGCAGAATGCATTAGTCGGGGATC-GACCCGGTCCCCCCTACGTGCTTCGATCC
66 CCGGCCGGAGAGGCAGAATGCACAAG-CCGGGATCAG-CCCGATCCCCCCTACGTGCTCCGATCC
* * * * *
36087783 GACTGTGACAACCCTTGGTTCGGTCCAATCTTAGACTGAGAATTAACTCCATATGCTTAGACATG
129 GACTGTGACAACCCTCGATCCAGTCCAATCTTAGACTGAGAATGAACTCCATATGCTTAGACATG
* * * *
36087848 GAATGAACTCCGTATGCCAAAGCCAACCCATGACACGAGCGTGCGGGCGCTCAGCCTATCAGAGA
194 GAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGA
* ** * *
36087913 GGCAGAATGCGCAAGTCAGGGATTGGCCAGATCCCCCTCTGTGTGCTGTCGATCCTGCTGCCACA
259 GGCAGAATGCGCAAGCCAGGGATCAGCCAGATCCCCCTCTGTGTGCTATCGATCCTGCTACCACA
* ** * *
36087978 ACCCTCAGTCTGATCTGATCTTAGACTGGGAAAGAACTCGTATGCCTAAGTCAACCGACGAAACA
324 ACCCTCAATCCCATCTGATCATAGACTGGGAAAGAACTCGTATGCCTAAGTCAACCGACAAAACA
* * * * *
36088043 AGCGTGCGGGCGTTAAATCGGTCGGAGAGGCATAATGCACAAGCTGCAGATCGACTCGATCCCCC
389 AGCATGCGGGCGTTAAAGCGCTCAGAGAGGCATAATGCACAAGC-GCAGATCGACCCGATCCCCC
*
36088108 TCTGCATGCTACTGGTCCCACTACCACAACGCTCGGTCCAGCTGGGGCATAGACATGGAATGAAC
453 TCTGCATGCTACTGGTCCCACTACCACAACGCTCGATCCAGCTGGGGCATAGACATGGAATGAAC
*
36088173 TCCCTATGCCTAAGCCAACCCCACGAAACGGGCGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAA
518 TCCCTATGCCTAAGCCAACCCCACGAAACGGGCGTGCGGGCACTCAGTCGATCGGAGAGGCAGAA
* * * * ** * * *
36088238 TGAGTAAGCTAGGGATCGGCCCAGTCCCCTCTTCATGCTGTCGATCCTGCTGTCGCAACCCTTAT
583 TGAGCAAGCTAGGGATCGACCCAGTCCCCCCTGCATGCTACCGATCCTACTGTCGCAACCCTCAG
* *
36088303 TTCGGACCGATCTTAGACTGGGAATGAACTCCGTATGCTTACACCGGGGATAAACTCTGTATGCC
648 TCCGGACCGATCTTAGACTGGGAATCAACTCCGTATGCTTACACCGGGGATAAACTCTGTATGCC
* * * * * *
36088368 TAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGTCGGCCGGAGAGGCATAATGCGTAAGTCG
713 TAAGTCAACCCACGAAACGAGCATACGGGCACTCAGCCGGCCGGAGAGGCATAATGCGTAAGCCA
* * * * **
36088433 GGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGGTCCTACTGGCACAACCCCC
778 GGGATCAGCACGATCCCCCTCTGCATGCTGTCGATCCTACTGCCAGTCCTACTACCACAACCCCC
* *
36088498 AGTCCGACTGGG
843 AATCCGACTAGG
* ** *
36088510 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGTGTGCGGGCGCTCAC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCATTCAA
* * * * *** *
36088575 CCGGCCGGAGAGGTAGAATACGCAAGTCAGGGATCAGCCCGATCCCTTTTGCGTGCTACCGATCC
66 CCGGCCGGAGAGGCAGAATGCACAAG-CCGGGATCAGCCCGATCCCCCCTACGTGCT-CCGATCC
* **
36088640 TG-CTGTTG-CAACCCTCGATCCAGTCCGATCTTAGACT-AGGAATGAACTCTGTATGCTTAGAC
129 -GACTG-TGACAACCCTCGATCCAGTCCAATCTTAGACTGA-GAATGAACTCCATATGCTTAGAC
*
36088702 ATGGAATGAACTCCGTATGCCTAAA-CCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACC-
191 ATGGAATGAACTCCGTATGCC-AAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCA
* * ** *
36088765 GAAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCTATCCCCC-CT-TACGTGCTATTGATCCTGC
255 G-AGAGGCAGAATGCGCAAGCCAGGGATCAGCCAGATCCCCCTCTGT--GTGCTATCGATCCTGC
* *
36088828 TACCCCAACCCTCAATCCCATCTGATCATAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCG
317 TACCACAACCCTCAATCCCATCTGATCATAGACTGGGAAAGAACTC-GTATGCCTAAGTCAACCG
* ** ** *
36088893 ACAAAACGAGCATGCGGGCG-TGGAGC-CTACTAGAGAGGCATAATGTGCAAGC-CAGGGATCGG
381 ACAAAACAAGCATGCGGGCGTTAAAGCGCT-C-AGAGAGGCATAATGCACAAGCGCA--GATCGA
* * * * *** *
36088955 CCCGATCCCCCTTTGCATGCT-GTCGGTCCCGCTGCCACAAC-CATCGATTTGGCTGGGGCTTAG
442 CCCGATCCCCCTCTGCATGCTACT-GGTCCCACTACCACAACGC-TCGATCCAGCTGGGGCATAG
* *
36089018 ACATGGAATGAACTTCCTATGCCTAAGCCAA-CCCACGAAACGGGCGTGCGGGCACTCAGTCGGT
505 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCCACGAAACGGGCGTGCGGGCACTCAGTCGAT
* * * * *
36089082 CGGAGGGGTAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCATGCTACCGATCCTACTG
570 CGGAGAGGCAGAATGAGCAAGCTAGGGATCGACCCAGTCCCCCCTGCATGCTACCGATCCTACTG
* * * * * *
36089147 TCGCAACCCTCGGTCCGGTCCGATCTTAGACT-GGAATTCAACTTCGTCTGCTTAGACTGGGGAT
635 TCGCAACCCTCAGTCCGGACCGATCTTAGACTGGGAA-TCAACTCCGTATGCTTACACCGGGGAT
* * * * *
36089211 TAACT-TCGTTTGCCTAAGTCAATCCACGAAACGAGCATACGGGCGCTCAGCCGGTCGGAGAGGC
699 AAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCACTCAGCCGGCCGGAGAGGC
* * *
36089275 GTAATGC-TCAAGCCAGGGATCAGCACGGTCCCCTTCTGCATGCTGTCGATCCTACTGCCAGTCC
763 ATAATGCGT-AAGCCAGGGATCAGCACGATCCCCCTCTGCATGCTGTCGATCCTACTGCCAGTCC
* * * *
36089339 TGCTACCATAACCCTCAATCCGGCTAGG
827 TACTACCACAACCCCCAATCCGACTAGG
* * *
36089367 GCTTCGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCATTGAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCATTCAA
* * *
36089432 CCGCCCGGAAAGGCATAATGCACAAGCCGTGGATCAGC
66 CCGGCCGGAGAGGCAGAATGCACAAGCCG-GGATCAGC
36089470 TCAGTCCACC
Statistics
Matches: 803, Mismatches: 137, Indels: 39
0.82 0.14 0.04
Matches are distributed among these distances:
855 1 0.00
856 114 0.14
857 545 0.68
858 143 0.18
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (854 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCATTCAA
CCGGCCGGAGAGGCAGAATGCACAAGCCGGGATCAGCCCGATCCCCCCTACGTGCTCCGATCCGA
CTGTGACAACCCTCGATCCAGTCCAATCTTAGACTGAGAATGAACTCCATATGCTTAGACATGGA
ATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGG
CAGAATGCGCAAGCCAGGGATCAGCCAGATCCCCCTCTGTGTGCTATCGATCCTGCTACCACAAC
CCTCAATCCCATCTGATCATAGACTGGGAAAGAACTCGTATGCCTAAGTCAACCGACAAAACAAG
CATGCGGGCGTTAAAGCGCTCAGAGAGGCATAATGCACAAGCGCAGATCGACCCGATCCCCCTCT
GCATGCTACTGGTCCCACTACCACAACGCTCGATCCAGCTGGGGCATAGACATGGAATGAACTCC
CTATGCCTAAGCCAACCCCACGAAACGGGCGTGCGGGCACTCAGTCGATCGGAGAGGCAGAATGA
GCAAGCTAGGGATCGACCCAGTCCCCCCTGCATGCTACCGATCCTACTGTCGCAACCCTCAGTCC
GGACCGATCTTAGACTGGGAATCAACTCCGTATGCTTACACCGGGGATAAACTCTGTATGCCTAA
GTCAACCCACGAAACGAGCATACGGGCACTCAGCCGGCCGGAGAGGCATAATGCGTAAGCCAGGG
ATCAGCACGATCCCCCTCTGCATGCTGTCGATCCTACTGCCAGTCCTACTACCACAACCCCCAAT
CCGACTAGG
Found at i:36089625 original size:159 final size:159
Alignment explanation
Indices: 36089329--36089625 Score: 360
Period size: 159 Copynumber: 1.9 Consensus size: 159
36089319 GTCGATCCTA
* *
36089329 CTGCCAGTCCTGCTACCATAACCCTCAATCCGGCTAGGGCTTCGACATGGAATGAACTCCATATG
1 CTGCCAGTCCTACTACCATAACCCTCAATCCGGCTAGGGCTTAGACATGGAATGAACTCCATATG
* * * * ** *
36089394 CCTAAGCCAACCCACGAAACGAGTGTGCGGGCATTGAACCGCCCGGAAAGGCATAATGCACAAGC
66 CCTAAGCCAACCCACAAAACGAGTGTACGGGCACTCAACCAACCGGAAAGGCAGAATGCACAAGC
*
36089459 CGTGGATCAGCTCAGTCCACCTCTACGTG
131 CGGGGATCAGCTCAGTCCACCTCTACGTG
* * * * * *
36089488 CTGCCAGTCCTACTACCATAATCCTCGATTCGGTTGGGGCTTAGACATGGAATGAACTCCCTATG
1 CTGCCAGTCCTACTACCATAACCCTCAATCCGGCTAGGGCTTAGACATGGAATGAACTCCATATG
** * * * * * * *
36089553 CCTAAGTGAACCCACAAAACGGGTGTACGGTCGCTCAGCCAATCGGAGAGGCAGAATGCGCAAGC
66 CCTAAGCCAACCCACAAAACGAGTGTACGGGCACTCAACCAACCGGAAAGGCAGAATGCACAAGC
*
36089618 TGGGGATC
131 CGGGGATC
36089626 GACCCGATCC
Statistics
Matches: 112, Mismatches: 26, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
159 112 1.00
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (159 bp):
CTGCCAGTCCTACTACCATAACCCTCAATCCGGCTAGGGCTTAGACATGGAATGAACTCCATATG
CCTAAGCCAACCCACAAAACGAGTGTACGGGCACTCAACCAACCGGAAAGGCAGAATGCACAAGC
CGGGGATCAGCTCAGTCCACCTCTACGTG
Found at i:36089863 original size:159 final size:158
Alignment explanation
Indices: 36089372--36090354 Score: 645
Period size: 159 Copynumber: 6.1 Consensus size: 158
36089362 CTAGGGCTTC
* * * * ** * * *
36089372 GACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCATTGAACCG-C
1 GACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCT-CAGCGAG
* * * * * * * * *
36089436 CCGGAAAGGCATAATGCACAAGCCGTGGATCAGCTC-AGTCCACCTCTACGTGCTGCC-AGTCCT
65 CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGA-TCCCCCCCTGCGTGCTGCCGA-TCCT
* * * * **
36089499 ACTACCATAATCCTCGATTCGGT-TGGGGCTTA
128 GCTA-CACAACCCTCGGTTCGGTCT-GATCTTA
* * * * *
36089531 GACATGGAATGAACTCCCTATGCCTAAGTGAACCCACAAAACG-G-GTGTACGGTCGCTCAGCCA
1 GACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGT--GGGCGCTCAGCGA
** * * *
36089594 ATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGAT-CCCCCTTGCGTGCTGCCGATCCTG
64 GCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCCTGCGTGCTGCCGATCCTG
* * * * **
36089658 CTGCCGCAACCCTTGGTCCAATCTGATCTTA
129 CT-ACACAACCCTCGGTTCGGTCTGATCTTA
* * * *
36089689 GAC-TGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCGTGTGGGCGTTGAGCGAG
1 GACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCGAG
* * * * * *
36089753 TCAGAGAGGCATAATGCACAAGTCGGGGATCGGCCCGATCCCCCCCTGCGTGCTGTCGATCCTGC
65 CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCCTGCGTGCTGCCGATCCTGC
**
36089818 TACATCAACCCTCAATTCGGTCTGATCTTA
130 TACA-CAACCCTCGGTTCGGTCTGATCTTA
* * * * * * *
36089848 GAC-TGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTGAGCCAA
1 GACATG-GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCGAG
* * * * * * * * *
36089912 CCAGAGAGGCATAATGCGTAGGCCAGGGATCGGCCTGATCCCCCTCTGCGTGCTGCTGGTCCTGC
65 CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCCTGCGTGCTGCCGATCCTGC
**
36089977 TACCACAACCCTCGG-TCTGG-CTAGGGCTTA
130 TA-CACAACCCTCGGTTC-GGTCT-GATCTTA
* * * * *
36090007 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCT--GCG-GC
1 GACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCGAGC
* * *
36090069 CGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATCCCCCTG
66 CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCC--C-TGC-GT-G------CTG
* * * *
36090134 TCGATCCTGCTGCCACAACCCTCGGTTCAG-CTGAGGCTTA
120 CCGATCCTGCT-ACACAACCCTCGGTTCGGTCTGA-TCTTA
** * * *
36090174 GACATGGAATGAACTTTGTATGACTAAGCCAACCCACGAAACGAGTGTGTGGGCGCTCAGTCG-G
1 GACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAG-CGAG
* * * ** * * * *
36090238 CTGGAGAGGTAGAATGCACAAGTGGGGGATCGGCCTGAT-CCCCTCTACGTGCTACCGATCCTGC
65 CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCCTGCGTGCTGCCGATCCTGC
* * * *
36090302 TAC-CGTAACCCTCGATCCGATCTTATCTTA
130 TACAC--AACCCTCGGTTCGGTCTGATCTTA
*
36090332 GAC-TAAGAATGAACTCCGTATGC
1 GACAT-GGAATGAACTCCGTATGC
36090355 TTAGACTGGG
Statistics
Matches: 646, Mismatches: 140, Indels: 77
0.75 0.16 0.09
Matches are distributed among these distances:
156 39 0.06
157 8 0.01
158 166 0.26
159 294 0.46
160 11 0.02
161 1 0.00
164 1 0.00
165 2 0.00
166 3 0.00
167 81 0.13
168 2 0.00
169 5 0.01
170 33 0.05
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCGAGC
CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCCTGCGTGCTGCCGATCCTGCT
ACACAACCCTCGGTTCGGTCTGATCTTA
Found at i:36089921 original size:317 final size:314
Alignment explanation
Indices: 36089336--36090128 Score: 742
Period size: 317 Copynumber: 2.5 Consensus size: 314
36089326 CTACTGCCAG
* ** ** * * *
36089336 TCCTGCTACCATAACCCTCAATCCGGCTAGGGCTTCGACATGGAATGAACTCCATATGCCTAAGC
1 TCCTGCTACCACAACCCTCGGTCAAGCTAGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * ** * * * *
36089401 CAACCCACGAAACGAGTGTGCGGGCATTGAACCGCCCGGAAAGGCATAATGCACAAGCC-GTGGA
66 CAACCCACGAAATGAGCGTGCGGGCGCTG---CGGCCAGAGAGGCAAAATGCACAAGCCAG-GGA
* * * * * * * * * *
36089465 TCAGCTC-AGTCCACCTCTACGTGCTG-CCAGTCCTACTACCAT-AATCCTCGATTCGGT-TGGG
127 TCGGCCCGA-TCC-CCCCTGCATGCTGTCGA-TCCTGCTA-CATCAACCCTCAATTCGGTCT-GA
* * * **
36089526 GCTTAGACATGGAATGAACTCCCTATGCCTAAGTGAACCCACAAAACGGGTGTACGGTCGCTCAG
187 TCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACAAAACGAGCATACGGTCGCTCAG
* * **
36089591 CCAATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCT-TGCGTGCTGCCGA
252 CCAACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGA
* * * * * *
36089653 TCCTGCTGCCGCAACCCTTGGTCCAATCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAA
1 TCCTGCTACCACAACCCTCGGT-CAAGCTAGAGCTTAGACAT-GGAATGAACTCCCTATGCCTAA
** * * * * * *
36089716 GTTAACCCACGAAATGAGCGTGTGGGCGTTGAGCGAGTCAGAGAGGCATAATGCACAAGTCGGGG
64 GCCAACCCACGAAATGAGCGTGCGGGCGCT--GCG-GCCAGAGAGGCAAAATGCACAAGCCAGGG
*
36089781 ATCGGCCCGATCCCCCCCTGCGTGCTGTCGATCCTGCTACATCAACCCTCAATTCGGTCTGATCT
126 ATCGGCCCGAT-CCCCCCTGCATGCTGTCGATCCTGCTACATCAACCCTCAATTCGGTCTGATCT
* ** * *
36089846 TAGAC-TGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGT-GCTGAGC
190 TAGACATG-GAATGAACTCCCTATGCCTAAGTCAACCCACAAAACGAGCATAC-GGTCGCTCAGC
* * * * * * *
36089909 CAACCAGAGAGGCATAATGCGTAGGCCAGGGATCGGCCTGATCCCCCTCTGCGTGCTGCTGG
253 CAACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGA
** *
36089971 TCCTGCTACCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
1 TCCTGCTACCACAACCCTCGGTCAAGCTAGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * *
36090036 CAACCCACGAAATGGGCGTGCGGGCGCTGCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGG
66 CAACCCACGAAATGAGCGTGCGGGCGCTGCGGCCAGAGAGGCAAAATGCACAAGCCAGGGATCGG
*
36090101 CCCGGTCCCCCCTGCATGCTGTCGATCC
131 CCCGATCCCCCCTGCATGCTGTCGATCC
36090129 CCCTGTCGAT
Statistics
Matches: 384, Mismatches: 76, Indels: 35
0.78 0.15 0.07
Matches are distributed among these distances:
314 21 0.05
315 33 0.09
316 11 0.03
317 220 0.57
318 97 0.25
319 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (314 bp):
TCCTGCTACCACAACCCTCGGTCAAGCTAGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
CAACCCACGAAATGAGCGTGCGGGCGCTGCGGCCAGAGAGGCAAAATGCACAAGCCAGGGATCGG
CCCGATCCCCCCTGCATGCTGTCGATCCTGCTACATCAACCCTCAATTCGGTCTGATCTTAGACA
TGGAATGAACTCCCTATGCCTAAGTCAACCCACAAAACGAGCATACGGTCGCTCAGCCAACCAGA
GAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGA
Found at i:36090357 original size:26 final size:26
Alignment explanation
Indices: 36090328--36090380 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
36090318 CCGATCTTAT
*
36090328 CTTAGACTAAGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCATATG
** *
36090354 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAAGAATGAACTCCATATG
36090380 C
1 C
36090381 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCATATG
Found at i:36091218 original size:317 final size:315
Alignment explanation
Indices: 36090626--36093039 Score: 1055
Period size: 317 Copynumber: 7.5 Consensus size: 315
36090616 TTCGGGCTAC
* *
36090626 CGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTCT-GACATGGAATGAACTCTGTATGCCT
1 CGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCT-TAGACATGGAATGAATTCTCTATGCCT
*
36090690 AAGCCAACCCACGAAATGAGCGTG-CGGGTGCTCAGCCGACCGGAGAGGTAG-AA-TGCATAAGA
65 AAGCCAACCCACGAAATG-G-GTGTCGGGTGCTCAGCCGACCGGAGAGGTAGAAAGTGC--AAGC
* * *
36090752 CGGGGATC-GACCTGGTCCCCCCTGCGTGCTGTCGATCATGCTACTG-C-AACCCTTAGTCCGGT
126 CAGGGATCAG-CCTGATCCCCCCTGCGTGCTGTCGATC---CTACTGTCGAACCCTTGGTCCGGT
* * ** * *
36090814 CTGATCTTACACTAGGAATGAACTCCATATTTATAAGTCAACCCATGAAATGAGCGTACGTGCGT
187 CTGATCTTACACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCGT
* ** * * ** *
36090879 TGAGTCGGTCGAAGAGGCATAATGCGCAAGTCAG-GGATCGACTTGGTCCCCCTCTGCATGCTGT
252 TAAACCAGTCGAAGAAGCATAATGCGCAAG-CAGAGGATCGACCCGATCCCCCTCTGCATGCTGT
* * * * * *
36090943 CGGTCATGCTATCACAACCCTCGGTCTGACAGGCGCTTAGACATGCAATGAATTCTCTATGCCTA
1 CGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAATTCTCTATGCCTA
** ** * *
36091008 AGCCAACCCACGAAATGGGTGTACGGGCACTCAGTTGACCGGAGAGGCAGAAAGTGCAAGCCAAG
66 AGCCAACCCACGAAATGGGTGT-CGGGTGCTCAGCCGACCGGAGAGGTAGAAAGTGCAAGCCAGG
* * * * * ** *
36091073 GATCAGCCCGATCCCCCCTGCCTACTGTCGGTCCTACTGTCGAAACCTTCGGTTTGGTCCGATCT
130 GATCAGCCTGATCCCCCCTGCGTGCTGTCGATCCTACTGTCGAACCCTT-GGTCCGGTCTGATCT
*
36091138 TACACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGTGTTAAACCA
194 TACACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCGTTAAACCA
* * * * * *
36091203 GTCGAAGAAGCATAATGCGTAAGCCGAGGATTGGCCCGATGCCCCTCTGCGTGCTGT
259 GTCGAAGAAGCATAATGCGCAAGCAGAGGATCGACCCGATCCCCCTCTGCATGCTGT
* * * **
36091260 CGGTCCCGCTGCCACAACACTC-GTCCGGTTGGGGCTTAGACATGGAATGAATTCTCTATGCCTA
1 CGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAATTCTCTATGCCTA
* * * *
36091324 AGCCAACCCACGAAACAGGCGTGT-GGATGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCAG
66 AGCCAACCCACGAAA-TGG-GTGTCGGGTGCTCAGCCGACCGGAGAGGTAGAAAGTGCAAGCCAG
*
36091388 GGATCGAG-CTGATCCCCCCCTGCGTGCTATCGATCCTACTGTCGCAACCCTTGGTCCGGTCTGA
129 GGATC-AGCCTGAT-CCCCCCTGCGTGCTGTCGATCCTACTGTCG-AACCCTTGGTCCGGTCTGA
* * * * * ** *
36091452 TCTTACACTGGGGATGAACTCCGTAGGCCTAAGTCAACCCATGAAACGAGTGTATGGGCACTCAA
191 TCTTACACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCGTTAAA
* * *
36091517 CC-GATCGGAGAGGCCGACCGGAGAGGCATAATGTGCAAACCAG-GGATCGGCCC-AGTCCCCCT
256 CCAG-TC---GA-----A---GA-A-GCATAATGCGC-AAGCAGAGGATCGACCCGA-TCCCCCT
*
36091579 CTGTGTGCTGGTGATCCCACTGT
305 C----TGC-----AT---GCTGT
* * * *
36091602 CGGTCCTGATACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTC-CGCATGCCT
1 CGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAATTCTC-TATGCCT
* * * * * * * *
36091666 AAGCCAACCCACGAAACGAGCGTACGGGTGCTGAGCCGACCAGAGAGGCATAATA-CGCAAGCCG
65 AAGCCAACCCACGAAATGGGTGT-CGGGTGCTCAGCCGACCGGAGAGGTAGAA-AGTGCAAGCC-
** * * * * ** ** * * *
36091730 AATGATCGGCCTGATCCTCCTCTGCGTGCTGCCAATCCCGCTACCACAACCCTCGATCCGG-CTG
127 AGGGATCAGCCTGATCC-CCCCTGCGTGCTGTCGATCCTACTGTC-GAACCCTTGGTCCGGTCT-
** * * * * * * * * *
36091794 GGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGATCGTGCGGGCGCT
189 GATCTTACAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCGTT
* * ** * * ** * *
36091858 CAACC-GATCGAAG-AGACAGAATGCAAAAGTC-GGGGATCGGCTTGAT-CCCCT-TGCGTGCTA
253 AAACCAG-TCGAAGAAG-CATAATGCGCAAG-CAGAGGATCGACCCGATCCCCCTCTGCATGCTG
36091918 T
315 T
** * ** * * * * ** ** *
36091919 CAATCTTGCTGTCGCAACCCTCGATCCGATTCGATCTTAG-GTTGGGAATGAACTC-CGTATGCC
1 CGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACAT-GGAATGAATTCTC-TATGCC
* * ** * ** * * * *
36091982 TAAGTCAACCCATGAAATGAGCGTG-CGGACGCTGAGCCGGTCGGAGAGGCATAATGCGCAAGCC
64 TAAGCCAACCCACGAAATG-G-GTGTCGGGTGCTCAGCCGACCGGAGAGGTAGAAAGTGCAAGCC
* * * * * * ** * * * *
36092046 AGGGGTGA-CCCGGTCCCCCTCTGCGTGCTGTTGGTCCCGCTGCCACAACCCTCGGTCCAG-CTG
127 AGGGATCAGCCTGATCCCCC-CTGCGTGCTGTCGATCCTACTGTC-GAACCCTTGGTCCGGTCT-
* * * * * * *
36092109 GGTCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCTTGCGGGACG
189 GATCTTACAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGA-GCGTACGGG-CG
* * * * * * * * * * * ** * *
36092172 CTCAGCC-GACTGGAG-AG-GTAGATACACAAGCTGAGGATTGGCTTGGTCCCCC-CTGCGTGCT
251 TTAAACCAGTC-GAAGAAGCATA-ATGCGCAAGCAGAGGATCGACCCGATCCCCCTCTGCATGCT
*
36092233 GC
314 GT
** ** * * * ** * ** *
36092235 CAATCCTGCTGTCGCAACCCTTGGTCTGGTTCGATCTTAGAC-TGGGAATGAACTC-CATATGCC
1 CGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACAT-GGAATGAATTCTC-TATGCC
* * * * * * * * * *
36092298 TAAGTCAACCCATGAAACGAGTGTACAGGTGCTGAGCCGACCGGAGAGGCATAATGTGCAAGCCG
64 TAAGCCAACCCACGAAATGGGTGT-CGGGTGCTCAGCCGACCGGAGAGGTAGAAAGTGCAAGCCA
* * * * * * ** * * *
36092363 GGGATTAACCCGATCCCCCTCTGTGTGCTGCTGGTCTCGCTAC-CAC-AACCCTCGATCTGG-CT
128 GGGATCAGCCTGATCCCCC-CTGCGTGCTG-TCG-ATC-CTACTGTCGAACCCTTGGTCCGGTCT
** * * * * * * *
36092425 GGGGCTTAGACAT-GGAATGAACTACC-TATGCCTAAGCCAATCCATGAAATGAGTGTGCGGGCG
189 -GATCTTACAC-TGGGAATGAACT-CCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCG
* * * ** * * * * * * *
36092488 CTCAGCCAACCGAA-AAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGT-CCCCTCTGCGTGCTG
251 TTAAACCAGTCGAAGAA-GCATAATGCGCAAGCAGAGGATCGACCCGATCCCCCTCTGCATGCTG
*
36092551 C
315 T
* ** * * * * *
36092552 CAGTCCCACTGCCACAACCCTCGGTCTGGCTGGAGCTTAGACATGGAATGAACTC-CGTATGCCT
1 CGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAATTCTC-TATGCCT
* * * * *
36092616 AAGCCAACCCACGAAATGAGCGTAT-GGGCGCTCAGCCGATCGGAGAGGCAG-AA-TGCACCAAC
65 AAGCCAACCCACGAAATG-G-GTGTCGGGTGCTCAGCCGACCGGAGAGGTAGAAAGTGCA--AGC
* * * * * * ** *
36092678 CGGGGATCGGCCT-AGTCCCCCCTGCATGCTGTCGATCTTACTGCCGCAACCCTTAGTCCTTTTT
126 CAGGGATCAGCCTGA-TCCCCCCTGCGTGCTGTCGATCCTACTGTCG-AACCCTTGGTCCGGTCT
* * * * * ** *
36092742 GATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTACGAGCACTG
189 GATCTTACACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCGTTA
* * ** *
36092807 AGCCGGTCGAAGAAGCATAATGCGCAAGCCAG-GGATCGATCTTG-TCCCCCTCTGCGTGCTGT
254 AACCAGTCGAAGAAGCATAATGCGCAAG-CAGAGGATCGA-CCCGATCCCCCTCTGCATGCTGT
** ** * * * *
36092869 CGGTCCTGCTGTCGTAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
1 CGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAATTCTCTATGCCTA
* * * * * * *
36092934 AGCCAACCCATGAAACGGGCATG-CAGGTGCTCAGTCGACCGGAGAGGTAGAATGCGCAAG-CTG
66 AGCCAACCCACGAAATGGG--TGTCGGGTGCTCAGCCGACCGGAGAGGTAGAAAGTGCAAGCCAG
* * * * * *
36092997 AGATC-GACCTGGTCCCCCCTACGTGCTATTGATCCTGCTGTCG
129 GGATCAG-CCTGATCCCCCCTGCGTGCTGTCGATCCTACTGTCG
36093040 CAACACTCGG
Statistics
Matches: 1649, Mismatches: 340, Indels: 217
0.75 0.15 0.10
Matches are distributed among these distances:
313 3 0.00
314 17 0.01
315 130 0.08
316 390 0.24
317 783 0.47
318 22 0.01
319 14 0.01
320 5 0.00
325 4 0.00
328 2 0.00
329 2 0.00
330 34 0.02
331 21 0.01
332 1 0.00
333 1 0.00
334 3 0.00
336 1 0.00
339 1 0.00
341 5 0.00
342 24 0.01
343 87 0.05
344 98 0.06
345 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (315 bp):
CGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAATTCTCTATGCCTA
AGCCAACCCACGAAATGGGTGTCGGGTGCTCAGCCGACCGGAGAGGTAGAAAGTGCAAGCCAGGG
ATCAGCCTGATCCCCCCTGCGTGCTGTCGATCCTACTGTCGAACCCTTGGTCCGGTCTGATCTTA
CACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCGTTAAACCAGT
CGAAGAAGCATAATGCGCAAGCAGAGGATCGACCCGATCCCCCTCTGCATGCTGT
Found at i:36091308 original size:158 final size:157
Alignment explanation
Indices: 36090626--36092950 Score: 1130
Period size: 158 Copynumber: 14.5 Consensus size: 157
36090616 TTCGGGCTAC
* * *
36090626 CGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTCT-GACATGGAATGAACTCTGTATGCCT
1 CGGTCCTGCTGCCACAACCCTC-GTCCGGCTGGGGCT-TAGACATGGAATGAACTCCGTATGCCT
* * * * * * * * * ** * *
36090690 AAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGACCGGAGAGGTAGAATGCATAAGACGG
64 AAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCG-TCGAAGAAGCATAATGCGCAAGCCGA
* * *
36090755 GGATCGACCTGGTCCCCC-CTGCGTGCTGT
128 GGATCGGCCCGATCCCCCTCTGCGTGCTGT
* * * ** * ** * * ***
36090784 CGATCATGCTACTGCAACCCTTAGTCCGGTCT-GATCTTACAC-TAGGAATGAACTCCATATTTA
1 CGGTCCTGCTGCCACAACCC-TCGTCCGG-CTGGGGCTTAGACAT-GGAATGAACTCCGTATGCC
* * * * * * * *
36090847 TAAGTCAACCCATGAAATGAGCGTACGTGCGTTGAGTCGGTCGAAGAGGCATAATGCGCAAGTC-
63 TAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG-CCGTCGAAGAAGCATAATGCGCAAGCCG
* ** * *
36090911 AGGGATCGACTTGGTCCCCCTCTGCATGCTGT
127 A-GGATCGGCCCGATCCCCCTCTGCGTGCTGT
* ** * * * * * *
36090943 CGGTCATGCTATCACAACCCTCGGTCTGACAGGCGCTTAGACATGCAATGAATTCTC-TATGCCT
1 CGGTCCTGCTGCCACAACCCTC-GTCCGGCTGGGGCTTAGACATGGAATGAACTC-CGTATGCCT
* * * * * ** * * * * * * *
36091007 AAGCCAACCCACGAAATGGGTGTACGGGCACTCAGTTGACCGGAGAGGCAGAAAGTGCAAGCCAA
64 AAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCG-TCGAAGAAGCATAATGCGCAAGCCGA
* * *
36091072 GGATCAGCCCGATCCCCC-CTGCCTACTGT
128 GGATCGGCCCGATCCCCCTCTGCGTGCTGT
* * * ** * ** *
36091101 CGGTCCTACTGTCGA-AACCTTCGGTTTGG-TCCGATCTTACAC-TGGGAATGAACTCCGTATGC
1 CGGTCCTGCTG-CCACAACCCTC-GTCCGGCT-GGGGCTTAGACAT-GGAATGAACTCCGTATGC
* * * * * * *
36091163 ATAAGTCAACCCATGAAACGAGCGTACGGGTGTTAAACCAGTCGAAGAAGCATAATGCGTAAGCC
62 CTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCC-GTCGAAGAAGCATAATGCGCAAGCC
* *
36091228 GAGGATTGGCCCGATGCCCCTCTGCGTGCTGT
126 GAGGATCGGCCCGATCCCCCTCTGCGTGCTGT
* * * *
36091260 CGGTCCCGCTGCCACAACACTCGTCCGGTTGGGGCTTAGACATGGAATGAATTCTC-TATGCCTA
1 CGGTCCTGCTGCCACAACCCTCGTCCGGCTGGGGCTTAGACATGGAATGAACTC-CGTATGCCTA
* ** ** * * * * *
36091324 AGCCAACCCACGAAAC-AGGCGTGTGGATGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCC-A
65 AGCCAACCCATGAAACGA-GCGTACGGGCGCTCAGCCG-TCGAAGAAGCATAATGCGCAAGCCGA
* * *
36091387 GGGATCGAG-CTGATCCCCCCCTGCGTGCTAT
128 -GGATCG-GCCCGATCCCCCTCTGCGTGCTGT
* * * * * ** * * *
36091418 CGATCCTACTGTCGCAACCCTTGGTCCGGTCT-GATCTTACAC-TGGGGATGAACTCCGTAGGCC
1 CGGTCCTGCTGCCACAACCC-TCGTCCGG-CTGGGGCTTAGACAT-GGAATGAACTCCGTATGCC
* * * * *
36091481 TAAGTCAACCCATGAAACGAGTGTATGGGCACTCAACCGATCGGAGAGGCCGACCGGAGAGGCAT
63 TAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCG-TC---GA-----A---GA-A-GCAT
* *
36091546 AATGTGCAAACC-AGGGATCGGCCC-AGTCCCCCTCTGTGTGCTGGTGATCCCACTGT
114 AATGCGCAAGCCGA-GGATCGGCCCGA-TCCCCCTC----TGC--GTG------CTGT
* * * *
36091602 CGGTCCTGATACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCGCATGCCTA
1 CGGTCCTGCTGCCACAACCCTC-GTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
* * * * * * *
36091667 AGCCAACCCACGAAACGAGCGTACGGGTGCTGAGCCGACCAGAGAGGCATAATACGCAAGCCGAA
65 AGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGTCGA-AGAAGCATAATGCGCAAGCCG-A
* * * *
36091732 TGATCGGCCTGATCCTCCTCTGCGTGCTGC
128 GGATCGGCCCGATCCCCCTCTGCGTGCTGT
** * * *
36091762 CAATCCCGCTACCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
1 CGGTCCTGCTGCCACAACCCTCG-TCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
* * * * * * ** * *
36091827 AGCCAACCCACGAAATGATCGTGCGGGCGCTCAACCGATCGAAG-AGACAGAATGCAAAAGTCGG
65 AGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCG-TCGAAGAAG-CATAATGCGCAAGCCGA
** *
36091891 GGATCGGCTTGAT-CCCCT-TGCGTGCTAT
128 GGATCGGCCCGATCCCCCTCTGCGTGCTGT
** * * * ** * ** **
36091919 CAATCTTGCTGTCGCAACCCTCGATCCGATTCGATCTTAG-GTTGGGAATGAACTCCGTATGCCT
1 CGGTCCTGCTGCCACAACCCTCG-TCCGGCTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCT
* * * * * * *
36091983 AAGTCAACCCATGAAATGAGCGTGCGGACGCTGAGCCGGTCGGAGAGGCATAATGCGCAAGCC-A
64 AAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCC-GTCGAAGAAGCATAATGCGCAAGCCGA
* * *
36092047 GGGGT-GACCCGGTCCCCCTCTGCGTGCTGT
128 -GGATCGGCCCGATCCCCCTCTGCGTGCTGT
* * * * *
36092077 TGGTCCCGCTGCCACAACCCTCGGTCCAGCTGGGTCTTAGACATGGAATGAACTCCCTATGCCTA
1 CGGTCCTGCTGCCACAACCCTC-GTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
* * * * * * * *
36092142 AGCCAACCCATGAAAC-AGGCTTGCGGGACGCTCAGCCGACTGGAG-AG-GTAGATACACAAGCT
65 AGCCAACCCATGAAACGA-GCGTACGGG-CGCTCAGCCGTC-GAAGAAGCATA-ATGCGCAAGCC
* ** * *
36092204 GAGGATTGGCTTGGTCCCCC-CTGCGTGCTGC
126 GAGGATCGGCCCGATCCCCCTCTGCGTGCTGT
** * * * * * * ** *
36092235 CAATCCTGCTGTCGCAACCCTTGGTCTGGTTCGATCTTAGAC-TGGGAATGAACTCCATATGCCT
1 CGGTCCTGCTGCCACAACCC-TCGTCCGGCTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCT
* * * * * * * * * *
36092299 AAGTCAACCCATGAAACGAGTGTACAGGTGCTGAGCCGACCGGAGAGGCATAATGTGCAAGCCGG
64 AAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCG-TCGAAGAAGCATAATGCGCAAGCCGA
*** *
36092364 GGATTAACCCGATCCCCCTCTGTGTGCTG-
128 GGATCGGCCCGATCCCCCTCTGCGTGCTGT
* *
36092393 CTGGT-CTCGCTACCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTACC-TATGC
1 C-GGTCCT-GCTGCCACAACCCTCG-TCCGGCTGGGGCTTAGACATGGAATGAACT-CCGTATGC
* * * * ** *
36092456 CTAAGCCAATCCATGAAATGAGTGTGCGGGCGCTCAGCCAACCGAA-AAGGCAGAATGCGCAAGC
62 CTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCC-GTCGAAGAA-GCATAATGCGCAAGC
* * * *
36092520 CGGGGATCGGCTCGGT-CCCCTCTGCGTGCTGC
125 CGAGGATCGGCCCGATCCCCCTCTGCGTGCTGT
* ** * *
36092552 CAGTCCCACTGCCACAACCCTCGGTCTGGCTGGAGCTTAGACATGGAATGAACTCCGTATGCCTA
1 CGGTCCTGCTGCCACAACCCTC-GTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
* * * * * * * *
36092617 AGCCAACCCACGAAATGAGCGTATGGGCGCTCAGCCGATCGGAGAGGCAGAATGCACCAA-CCGG
65 AGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCG-TCGAAGAAGCATAATGC-GCAAGCCGA
* *
36092681 GGATCGG-CCTAGTCCCCC-CTGCATGCTGT
128 GGATCGGCCCGA-TCCCCCTCTGCGTGCTGT
* * * * * *** * ** *
36092710 CGATCTTACTGCCGCAACCCTTAGTCCTTTTTGATCTTAGAC-TGGGAATGAACTCCATATGCCT
1 CGGTCCTGCTGCCACAACCC-TCGTCCGGCTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCT
* * * * *
36092774 AAGTCAACCCATGAAATGAGCGTACGAGCACTGAGCCGGTCGAAGAAGCATAATGCGCAAGCC-A
64 AAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCC-GTCGAAGAAGCATAATGCGCAAGCCGA
* **
36092838 GGGATCGATCTTG-TCCCCCTCTGCGTGCTGT
128 -GGATCG-GCCCGATCCCCCTCTGCGTGCTGT
* ** * *
36092869 CGGTCCTGCTGTCGTAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
1 CGGTCCTGCTGCCACAACCC-TCGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
36092934 AGCCAACCCATGAAACG
65 AGCCAACCCATGAAACG
36092951 GGCATGCAGG
Statistics
Matches: 1629, Mismatches: 424, Indels: 227
0.71 0.19 0.10
Matches are distributed among these distances:
156 5 0.00
157 142 0.09
158 766 0.47
159 440 0.27
160 112 0.07
161 2 0.00
162 1 0.00
166 3 0.00
167 1 0.00
168 3 0.00
170 2 0.00
171 15 0.01
172 43 0.03
173 4 0.00
176 5 0.00
178 3 0.00
180 1 0.00
183 4 0.00
184 76 0.05
185 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
CGGTCCTGCTGCCACAACCCTCGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
GCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGTCGAAGAAGCATAATGCGCAAGCCGAGGA
TCGGCCCGATCCCCCTCTGCGTGCTGT
Found at i:36092515 original size:475 final size:474
Alignment explanation
Indices: 36091613--36093023 Score: 1216
Period size: 475 Copynumber: 3.0 Consensus size: 474
36091603 GGTCCTGATA
* *
36091613 CCACAACCCTCAGTCC-GACTGGGGCTTAGACATGGAATGAACTCCGC-ATGCCTAAGCCAACCC
1 CCACAACCCTCGGTCCAG-CTGGAGCTTAGACATGGAATGAACTCC-CTATGCCTAAGCCAACCC
* * * * * * * *
36091676 ACGAAACGAGCGTACGGGTGCTGAGCCGACCAGAGAGGCATAATAC-GCAAGCCGAATGATCGGC
64 ACGAAAAGAGCGTACGGGCGCTCAGCCGATCGGAGAGGCAGAATACACCAA-CCG-AGGATCGGC
* * ** * * * * * * **
36091740 CT-GATCCTCCTCTGCGTGCTGCCAATCCCGCTACCACAACCC-TCGATCCGGCTGGGGCTTAGA
127 CTAG-TCC-CCCCTGCATGCTGCCAATCCTACTGCCGCAACCCTTAG-TCCTGTTCGATCTTAGA
* * * * * * * * * * *
36091803 CAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGATCGTGCGGGCGCTCAACCGATC
189 C-TGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTACGAGCACTGAGCCGACC
* ** * * * ** * ** *
36091867 GAAG-AGACAGAATGCAAAAGTCGGGGATCG-GCTTGAT-CCCCT-TGCGTGCTATCAATCTTGC
253 GAAGAAG-CATAATGCGCAAGCCAGGGATCGAACCCG-TCCCCCTCTGCGTGCTGTCGGTCCTGC
** * ** * ** ** *
36091928 TGTCGCAACCCTCGATCCGATTCGATCTTAG-GTTGGGAATGAACTCCGTATGCCTAAGTCAACC
316 TACCACAACCCTCGATCCGGCTGGGGCTTAGACAT-GGAATGAACTCC-TATGCCTAAGCCAACC
* *** * * *
36091992 CATGAAATGAGCGTGCGGACGCTGAGCCGGTCGGAGAGGCATAATGCGCAAGCCAGGGG-T-GAC
379 CATGAAATGAGCGTGCGGACGCTCAGCCAACCGAAAAGGCAGAATGCGCAAGCC-GGGGATCGAC
*** *
36092055 CCGGTCCCCCTCTGCGTGCTGTTGGTCCCGCTG
443 CCGGT-CCCCTCTGCGTGCTGCCAGTCCCACTG
36092088 CCACAACCCTCGGTCCAGCTGG-GTCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 CCACAACCCTCGGTCCAGCTGGAG-CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * * *
36092152 TGAAACAG-GCTTGCGGGACGCTCAGCCGA-CTGGAGAGGTAG-ATACA-CAAGCTGAGGATTGG
65 CGAAA-AGAGCGTACGGG-CGCTCAGCCGATC-GGAGAGGCAGAATACACCAA-CCGAGGATCGG
* * * * * *
36092213 CTTGGTCCCCCCTGCGTGCTGCCAATCCTGCTGTCGCAACCCTTGGT-CTGGTTCGATCTTAGAC
126 CCTAGTCCCCCCTGCATGCTGCCAATCCTACTGCCGCAACCCTTAGTCCT-GTTCGATCTTAGAC
* **
36092277 TGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGTGTAC-AGGTGCTGAGCCGACCG
190 TGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTACGA-GCACTGAGCCGACCG
* * * * * *
36092341 GAGAGGCATAATGTGCAAGCCGGGGAT-TAACCCGATCCCCCTCTGTGTGCTG-CTGGT-CTCGC
254 AAGAAGCATAATGCGCAAGCCAGGGATCGAACCCG-TCCCCCTCTGCGTGCTGTC-GGTCCT-GC
* *
36092403 TACCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTACCTATGCCTAAGCCAATCC
316 TACCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCC
* * * *
36092468 ATGAAATGAGTGTGCGGGCGCTCAGCCAACCGAAAAGGCAGAATGCGCAAGCCGGGGATCGGCTC
380 ATGAAATGAGCGTGCGGACGCTCAGCCAACCGAAAAGGCAGAATGCGCAAGCCGGGGATCGACCC
36092533 GGTCCCCTCTGCGTGCTGCCAGTCCCACTG
445 GGTCCCCTCTGCGTGCTGCCAGTCCCACTG
** *
36092563 CCACAACCCTCGGTCTGGCTGGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCAGCTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * *
36092628 GAAATGAGCGTATGGGCGCTCAGCCGATCGGAGAGGCAGAATGCACCAACCGGGGATCGGCCTAG
66 GAAAAGAGCGTACGGGCGCTCAGCCGATCGGAGAGGCAGAATACACCAACCGAGGATCGGCCTAG
* * * * *
36092693 TCCCCCCTGCATGCTGTCGATCTTACTGCCGCAACCCTTAGTCCTTTTTGATCTTAGACTGGGAA
131 TCCCCCCTGCATGCTGCCAATCCTACTGCCGCAACCCTTAGTCCTGTTCGATCTTAGACTGGGAA
* **
36092758 TGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTACGAGCACTGAGCCGGTCGAAGAAGC
196 TGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTACGAGCACTGAGCCGACCGAAGAAGC
* ** ** **
36092823 ATAATGCGCAAGCCAGGGATCGATCTTGTCCCCCTCTGCGTGCTGTCGGTCCTGCTGTCGTAACC
261 ATAATGCGCAAGCCAGGGATCGAACCCGTCCCCCTCTGCGTGCTGTCGGTCCTGCTACCACAACC
* * * *
36092888 CTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGG
326 CTCGATCCGGCTGGGGCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCATGAAATGAG
* * * * * * * * * * *
36092953 CATGCAGG-TGCTCAGTCGACCGGAGAGGTAGAATGCGCAAG-CTGAGATCGACCTGGTCCCCCC
390 CGTGC-GGACGCTCAGCCAACCGAAAAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTC
*
36093016 TACGTGCT
454 TGCGTGCT
36093024 ATTGATCCTG
Statistics
Matches: 757, Mismatches: 146, Indels: 67
0.78 0.15 0.07
Matches are distributed among these distances:
472 2 0.00
473 111 0.15
474 71 0.09
475 531 0.70
476 42 0.06
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (474 bp):
CCACAACCCTCGGTCCAGCTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
GAAAAGAGCGTACGGGCGCTCAGCCGATCGGAGAGGCAGAATACACCAACCGAGGATCGGCCTAG
TCCCCCCTGCATGCTGCCAATCCTACTGCCGCAACCCTTAGTCCTGTTCGATCTTAGACTGGGAA
TGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTACGAGCACTGAGCCGACCGAAGAAGC
ATAATGCGCAAGCCAGGGATCGAACCCGTCCCCCTCTGCGTGCTGTCGGTCCTGCTACCACAACC
CTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCATGAAATGAGC
GTGCGGACGCTCAGCCAACCGAAAAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTCTG
CGTGCTGCCAGTCCCACTG
Found at i:36093102 original size:26 final size:26
Alignment explanation
Indices: 36093063--36093116 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
36093053 AGTTCGATCA
36093063 TAGATTCGGAATGAACTACATATGCC
1 TAGATTCGGAATGAACTACATATGCC
* * * *
36093089 TAGATTGGGGATGAACTCCGTATGCC
1 TAGATTCGGAATGAACTACATATGCC
36093115 TA
1 TA
36093117 AGTCAACCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
TAGATTCGGAATGAACTACATATGCC
Found at i:36093725 original size:11 final size:11
Alignment explanation
Indices: 36093694--36093726 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
36093684 CAGTTAGGCT
36093694 CTCCGACGATG
1 CTCCGACGATG
36093705 CTCC-AGCGATG
1 CTCCGA-CGATG
36093716 CTCCGACGATG
1 CTCCGACGATG
36093727 GTGCCCCGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 1 0.05
11 18 0.90
12 1 0.05
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:36093825 original size:26 final size:26
Alignment explanation
Indices: 36093796--36093848 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36093786 GACTCAAAAT
36093796 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
36093822 CTTATACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
36093848 C
1 C
36093849 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:36094064 original size:158 final size:158
Alignment explanation
Indices: 36093831--36094319 Score: 562
Period size: 158 Copynumber: 3.1 Consensus size: 158
36093821 GCTTATACAT
* * *
36093831 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAGCCGACCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAG
* *
36093896 AGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACATGCTGTCGATCCTGCTACCGCA
66 AGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCA
* * * * *
36093961 ACTCTTGGTCTGGTTCGATCTTACACTG
131 ACCCTCGGTCCGATTCGATCTTAGACTG
* * ** *
36093989 GGAATGAACTTCGTATGCATAAGTTAACCCACGAAACGAGCGTGCGGGCACTGAGCCGACCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAG
* * * * * * *
36094054 AGGCATAATGCGCAAGCCGGGGATC-AGCCCGG-CCCCCTCTGCGTGCTGTTGGTCCCGCTGCCA
66 AGGCAGAATGCGCAAGCCAGGGATCGA-CCCGGTCCCCC-CTACGTGCTGTCGATCCTGCTGCCG
* * * *
36094117 CAACCCTCAGTCCAACT-GGTGCTTAGACAT-
129 CAACCCTCGGTCCGATTCGAT-CTTAGAC-TG
* * * * *
36094147 GGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGGGCGTGCGGGCGCTCG-GCCAGTCAG-
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT-GAGCC-GACCGA
* *
36094210 AGCGGCAGAATGCGCAAGTCAGGGATCGACCCGGT-CCCCCTACGTGCTGTCGATCCTGCTGCCG
64 AGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCG
36094274 CAACCCTCGGTCCGATTCGATCTTAGAC-G
129 CAACCCTCGGTCCGATTCGATCTTAGACTG
*
36094303 GGAATGAACTTCGTATG
1 GGAATGAACTCCGTATG
36094320 TTTAGACTGG
Statistics
Matches: 270, Mismatches: 51, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
156 15 0.06
157 49 0.18
158 200 0.74
159 6 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAG
AGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCA
ACCCTCGGTCCGATTCGATCTTAGACTG
Found at i:36094324 original size:25 final size:26
Alignment explanation
Indices: 36094296--36094345 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
36094286 CGATTCGATC
*
36094296 TTAGAC-GGGAATGAACTTCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
*
36094321 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
36094346 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:36094699 original size:184 final size:190
Alignment explanation
Indices: 36094503--36094967 Score: 532
Period size: 184 Copynumber: 2.4 Consensus size: 190
36094493 TCCGACTGGG
* *
36094503 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * *
36094568 TCGGCCGGAGAGGTAAAATGTGCAAGCCGA-GGATCGGCCCGGTCCCCCCTGCGTGCTACCAATC
66 CCGGCCGGAGAGGCAAAATGTGCAAG-CGAGGGATCGGCCCGGTCCCCCCTGCATGCTACCAATC
* * *
36094632 CTA-CT-GT-C-G-C-AACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCATAT
130 CTACCTGGTCCTGCCGAAACCTCGGTCCGGCCCGATCTTAGACTAGGAATGAACTCCATAT
* * * * * ** *
36094687 GCTTACACATGGAATGAA-TTTCGTATGCCTTAGCCAACCCATGAAATGAACGTATGGGCACTCA
1 GCTTAGACATGGAATGAACTCT-GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * **
36094751 ACCGACCGGAGAGGCAAAATGTGTAAGCTAGGGATCGGCCCGGTCCCCCCTGCATGCTACGGATC
65 ACCGGCCGGAGAGGCAAAATGTGCAAGCGAGGGATCGGCCCGGTCCCCCCTGCATGCTACCAATC
** * * *
36094816 CTACTGCTGGTCCTGCTACCGTAAACCTCGGTTTGGCCCGATCTTAGACTGGGAATGAACTTCGT
130 CTAC--CTGGTCCTG---CCG-AAACCTCGGTCCGGCCCGATCTTAGACTAGGAATGAACTCCAT
36094881 AT
189 AT
* * *
36094883 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGTGTGCAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
*
36094948 CCGGCCGGAGAGGCAGAATG
66 CCGGCCGGAGAGGCAAAATG
36094968 CGTAAGCCGG
Statistics
Matches: 227, Mismatches: 39, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
183 4 0.02
184 108 0.48
187 2 0.01
188 2 0.01
189 1 0.00
190 1 0.00
194 1 0.00
196 106 0.47
197 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (190 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
CCGGCCGGAGAGGCAAAATGTGCAAGCGAGGGATCGGCCCGGTCCCCCCTGCATGCTACCAATCC
TACCTGGTCCTGCCGAAACCTCGGTCCGGCCCGATCTTAGACTAGGAATGAACTCCATAT
Found at i:36094896 original size:26 final size:26
Alignment explanation
Indices: 36094858--36094910 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
36094848 TTGGCCCGAT
36094858 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
36094884 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
36094910 C
1 C
36094911 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:36096224 original size:26 final size:26
Alignment explanation
Indices: 36096188--36096240 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36096178 CCAGCCCGCT
* *
36096188 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
36096214 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
36096240 C
1 C
36096241 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:36103699 original size:157 final size:157
Alignment explanation
Indices: 36103358--36103699 Score: 384
Period size: 157 Copynumber: 2.2 Consensus size: 157
36103348 ACTCCGTATG
* *
36103358 CTTAGACAT-GGAATGAACTCTTTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCTTATGCATAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
36103422 TCGATCGGAGAGGCAGAATGCGCAAGCCTGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCT
65 CCAACCGAAGAGGCAGAATGAGCAA-CCGGGGATCGACCCGGTCCCCCCTACGTGCTGCCGATCC
* * * ***
36103487 TGCTGCTGCAACCCTTGGTCCGGTTTGAT
129 TGCTACCGCAACCCTCGGTCCGGTCCAAT
* * * **
36103516 CTTACATTGGGAATGAACT-CTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCT-TATGCATAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* ** *
36103580 CCAACCGAAGAGGTAGAATGAGCAA-CGGAGGATCGACCCGGTCCCCCCTGTGTTCTGCCGATCC
65 CCAACCGAAGAGGCAGAATGAGCAACCGG-GGATCGACCCGGTCCCCCCTACGTGCTGCCGATCC
* *
36103644 TGCTACCGCCACCCTCGGTCCTGTCCAAT
129 TGCTACCGCAACCCTCGGTCCGGTCCAAT
36103673 CTTAGACTGGGAATGAACTCCTTATGC
1 CTTAGACTGGGAATGAACTCCTTATGC
36103700 TTAGACATGG
Statistics
Matches: 151, Mismatches: 29, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
156 2 0.01
157 75 0.50
158 74 0.49
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCTTATGCATAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
CAACCGAAGAGGCAGAATGAGCAACCGGGGATCGACCCGGTCCCCCCTACGTGCTGCCGATCCTG
CTACCGCAACCCTCGGTCCGGTCCAAT
Found at i:36103898 original size:26 final size:26
Alignment explanation
Indices: 36103869--36103921 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
36103859 CCGATCCTAT
36103869 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
36103895 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
36103921 C
1 C
36103922 CTAAGCCTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:36103979 original size:196 final size:196
Alignment explanation
Indices: 36103641--36104022 Score: 590
Period size: 196 Copynumber: 1.9 Consensus size: 196
36103631 GTTCTGCCGA
* * *
36103641 TCCTGCTACCGCCACCCTCGGTCCTGTCCAATCTTAGACTGGGAATGAACTCCTTATGCTTAGAC
1 TCCTGCTACCGCAACCCTCAGTCCTGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* *
36103706 ATGGAATGAACTCCGTATACCAAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAGCCGATCGG
66 ATGGAATGAACTCCGTATACCAAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCGG
* *
36103771 AGAGGCAGAATGCGCAAGTC-GAGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCTTACTGCT
131 AGAGGCAGAATGCGCAAGCCAG-GGATCGACCCAGTCCCCCCTACGTGCTGTCGATCTTACTGCT
36103835 GG
195 GG
* *
36103837 TCCTGCTACCGCAACCCTCATTCC-GATCCTATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
1 TCCTGCTACCGCAACCCTCAGTCCTG-TCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * *
36103901 CATGGAATGAACTCCGTATGCCTAAGCCTACCCACGAAACTAGCGTGC-GAGCGCTCAGCCGACC
65 CATGGAATGAACTCCGTATACCAAAGCCAACCCACGAAACGAGCGTGCAG-GCGCTCAGCCGACC
*
36103965 GGAGAGGTAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCTACGTGCTGTCGATC
129 GGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCTACGTGCTGTCGATC
36104023 CTGTTGCCGC
Statistics
Matches: 169, Mismatches: 14, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
195 2 0.01
196 166 0.98
197 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.24, T:0.20
Consensus pattern (196 bp):
TCCTGCTACCGCAACCCTCAGTCCTGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
ATGGAATGAACTCCGTATACCAAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCGG
AGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCTACGTGCTGTCGATCTTACTGCTG
G
Found at i:36104150 original size:158 final size:158
Alignment explanation
Indices: 36103895--36104395 Score: 507
Period size: 159 Copynumber: 3.2 Consensus size: 158
36103885 ACTCCGTATG
* *
36103895 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCTACCCACGAAACT-AGCGTGCGAGCGCTCA
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-TGAGCGTGCG-GCACTCA
* * *
36103958 GCCGACCGGAGAGGTAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCTACGTGCTGTCGATC
63 GCCGACCAGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATC
*
36104023 CTGTTGCCGCAACCCTCGGTCTGGTCT-GAT
128 CTGCTGCCGCAACCCTCGGTCTGGTCTCGAT
* * * * *
36104053 CTTTGATTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCACTGAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGC-GGCACTCAGC
* * * * * * *
36104118 CAACCTGAGAGGCATAATGCGCAAGCCGGGGATC-AGCCCGGTCCCCCTCTGCGAGCTGTCGGTC
65 CGACCAGAGAGGTAGAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCC-CTACGTGCTGTCGATC
* * * * * **
36104182 CCGCTGCCACAAGCCTCGGTCCGG-CTGGGG
128 CTGCTGCCGCAACCCTCGGTCTGGTCTCGAT
* * * * * *
36104212 CTTAGACAT-GGAATGAACTCCCTACGCCTAAGCCAACCCATGAAACGGGCGTACGGGCACTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGC-GGCACTCAG
* * * *
36104276 CCGGCCAGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTGGT-CCCCCTACGTGCTGCCGATCC
64 CCGACCAGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
** *
36104340 TGCTATCGCAACCCTCGAT-TCGGT-TCGAT
129 TGCTGCCGCAACCCTCGGTCT-GGTCTCGAT
*
36104369 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
36104396 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 59, Indels: 23
0.77 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 55 0.20
158 97 0.36
159 119 0.44
160 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGCACTCAGCC
GACCAGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTG
CTGCCGCAACCCTCGGTCTGGTCTCGAT
Found at i:36104405 original size:26 final size:26
Alignment explanation
Indices: 36104369--36104421 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
36104359 TCGGTTCGAT
36104369 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
36104395 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36104421 C
1 C
36104422 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36105006 original size:26 final size:26
Alignment explanation
Indices: 36104970--36105025 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
36104960 CTAGTCTGAT
36104970 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
36104996 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36105022 CTTA
1 CTTA
36105026 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36105139 original size:184 final size:183
Alignment explanation
Indices: 36104812--36105180 Score: 420
Period size: 184 Copynumber: 2.0 Consensus size: 183
36104802 TCCAGCTGGG
* *
36104812 GCTTAGACATGGAATGAACTCCGTATGCCTAACCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAACCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ***
36104877 CGATCGAAGAGGTAGAATGCCCAAGTCGGGGATCGGCCCAACCCCCCCTACGTGCTGTTGATCCT
66 CGACCGAAGAGGTAGAATGCCCAAGTCGGGGATCGACCCAACCCCCCCTACATGCTACAGATCCT
* * * * *
36104942 GCTGCCACAACCCTCGGTCTAG-TCTGATCTTAGACTGGGAATGAACTCCGTAT
131 ACTGCCACAACCCTCGATCCAGTTC-GATCTCAGACTGGGAATGAACTCCATAT
* * * * * *
36104995 GCTTAGAC-TGGGGATGAACTCCGTATGCTTAAGTCAACCCACGAAATGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAA-CCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
36105059 GCCGACCGGAGAGGTAGAATGCGCAAG-CGAGGGATCGACCCGATCCCCCTTGCATGTTACAGAT
64 GCCGACCGAAGAGGTAGAATGCCCAAGTCG-GGGATCGACCCAACCCCCCCTACATGCTACAGAT
* * *
36105123 CCTACTGTCGCAACCCTCGATCCGGTTCGATCTCAGACTGGGAATGAACTCCATAT
128 CCTACTGCCACAACCCTCGATCCAGTTCGATCTCAGACTGGGAATGAACTCCATAT
36105179 GC
1 GC
36105181 ATAAGCCAAC
Statistics
Matches: 153, Mismatches: 29, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
182 1 0.01
183 30 0.20
184 120 0.78
185 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAACCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGAAGAGGTAGAATGCCCAAGTCGGGGATCGACCCAACCCCCCCTACATGCTACAGATCCT
ACTGCCACAACCCTCGATCCAGTTCGATCTCAGACTGGGAATGAACTCCATAT
Found at i:36105320 original size:159 final size:158
Alignment explanation
Indices: 36104996--36105333 Score: 367
Period size: 159 Copynumber: 2.1 Consensus size: 158
36104986 ACTCCGTATG
* * * * * * *
36104996 CTTAGACTGGGGATGAACTCCGTATGCTTAAGTCAACCCACGAAATGAGCGTGCGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
36105061 CGACCGGAGAGGTAGAATGCGCAAGCGAGGGATCGACCCGATCCCCCTTGCATGTTACAGATCCT
66 CGACCGGAGAGGCAGAATGCGCAAGCGAGGGATCGACCCGATCCCCCCTGCATGTTACAGATCCT
** * * *
36105126 ACTGTCGCAACCCTCGATCCGGTTCGAT
131 ACTACCGCAACCCTCGATCCGATCCAAT
* * *
36105154 CTCAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGGGCTCAGT
1 CTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
36105219 CGGCTCGGAGAGGCAGAATGCGCAAGCCG-GGGATTGGCTCGGTCCCCCCTGGATGCTGT-C-GA
66 CGAC-CGGAGAGGCAGAATGCGCAAG-CGAGGGATCGACCCGATCCCCCCTGCATG-T-TACAGA
* * * * *
36105281 TCTTGCTACCGCAATCCTCGGTCTGATCCAAT
127 TCCTACTACCGCAACCCTCGATCCGATCCAAT
36105313 CTTAGACTGGGAATGAACTCC
1 CTTAGACTGGGAATGAACTCC
36105334 GTATCCCTAG
Statistics
Matches: 147, Mismatches: 29, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
158 58 0.39
159 84 0.57
160 4 0.03
161 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCGAGGGATCGACCCGATCCCCCCTGCATGTTACAGATCCT
ACTACCGCAACCCTCGATCCGATCCAAT
Found at i:36106068 original size:26 final size:26
Alignment explanation
Indices: 36106030--36106082 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
36106020 GGGTCAAAAT
* *
36106030 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
36106056 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
36106082 C
1 C
36106083 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:36106354 original size:159 final size:160
Alignment explanation
Indices: 36106055--36106717 Score: 608
Period size: 159 Copynumber: 4.2 Consensus size: 160
36106045 AACTTCGTAT
* * * *
36106055 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAG
* * * * * * **
36106120 CCGACCGGAGAGGCAAAATGTGTAAGCCGAGGATCGACCCGATAGCCCC-CTGCATGCTGTTGAT
66 CCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGAT-CCCCCTCTGCGTGCTGCCGAT
* *
36106184 CCTGTTGCCACAACCCTCAGTCCGGTCT-GA
130 CCTGCTGCCACAACCCTCAGTCCGATCTGGA
* * * * * *
36106214 TCTTACAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATACGAGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCA
* * * * * *
36106278 GCCAATCGAAGAGGCATAATGCGCAAGCTGAGGATCAACCCGATCCCCCTCTGTGTGCTGCCGGT
65 GCCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGCCGAT
* ** * * *
36106343 CCTGCTACCACAACCCTTGGTTCG-GCTGGG
130 CCTGCTGCCACAACCCTCAGTCCGATCTGGA
* * * * * *
36106373 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACTCATGAAATGAGCATG-TAGGCGCTGA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGA-GCGCTCA
* * * *
36106437 GCCGGCCTG-AGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGG
65 GCCGACC-GAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGCCGA
** *
36106501 TCCTGCTGCCACAACCCTTGGTCCGAT-TGGG
129 TCCTGCTGCCACAACCCTCAGTCCGATCTGGA
* * * * * *
36106532 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGTGCGTGCGAGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAG
* * * * * ** * **
36106597 CCGACCAAAGAGGCAGAATGCACAAGCTGGGGATCGGTCCGAT-CCCCTCTGTGTGCTGTTGATC
66 CCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATC
* * *
36106661 CTGCTGCCGCAACCCTCAGTCCAATC-CGA
131 CTGCTGCCACAACCCTCAGTCCGATCTGGA
* * *
36106690 TCTTAGA-TTGGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
36106718 TTAGGCTGGG
Statistics
Matches: 411, Mismatches: 82, Indels: 23
0.80 0.16 0.04
Matches are distributed among these distances:
157 1 0.00
158 69 0.17
159 338 0.82
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAG
CCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATC
CTGCTGCCACAACCCTCAGTCCGATCTGGA
Found at i:36106900 original size:183 final size:184
Alignment explanation
Indices: 36106545--36106900 Score: 432
Period size: 183 Copynumber: 1.9 Consensus size: 184
36106535 TAGACATGGA
* *
36106545 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGTGCGTGCGAGTGCTCAACCGACCAAAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGTGCTCAACCAACCAAAGAGG
* * * * *
36106610 CAGAATGCACAAGCTGGGGATCGGTCCGATCCCCTCTGTGTGCTGTTGATCCTGCTGCCGCAACC
66 CAGAATGCACAAGCTGGGGATCAGCCCGATCCCCTCTGTGTGCTGTCGATCCTACTACCGCAACC
* *
36106675 CTCAGTCCAATCCGATCTTAGATTGGGAATGAACTTCGTATGCTTAGGCTGGGG
131 CTCAGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCTGGGG
** * *
36106729 ATGAACTCTGTATGCCTAA-CTCAACCCATGAAACGAGCGTGCGA-TGCTCAGCCAACCAGAGAG
1 ATGAACTCCCTATGCCTAAGC-CAACCCATGAAACGAGCGTGCGAGTGCTCAACCAACCAAAGAG
* * ** * *
36106792 GTAGGATGTGCAAG-TCGGGGATCAGCCCGGT-CCCTCCTGTGTGCTGTCGATCCTACTATCGCA
65 GCAGAATGCACAAGCT-GGGGATCAGCCCGATCCCCT-CTGTGTGCTGTCGATCCTACTACCGCA
* * *** *
36106855 ACCTTCGGTCTGGTCCGATCTTAGACTGGGACTGAACTCCGTATGC
128 ACCCTCAGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGC
36106901 CTAAGTTAAC
Statistics
Matches: 144, Mismatches: 25, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
182 5 0.03
183 100 0.69
184 39 0.27
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (184 bp):
ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGTGCTCAACCAACCAAAGAGG
CAGAATGCACAAGCTGGGGATCAGCCCGATCCCCTCTGTGTGCTGTCGATCCTACTACCGCAACC
CTCAGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCTGGGG
Found at i:36107220 original size:26 final size:26
Alignment explanation
Indices: 36107191--36107243 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36107181 CCGGTCCGAT
36107191 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
36107217 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36107243 C
1 C
36107244 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36107721 original size:26 final size:26
Alignment explanation
Indices: 36107692--36107744 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
36107682 CCGGTCCGAT
36107692 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
36107718 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36107744 C
1 C
36107745 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36108194 original size:500 final size:498
Alignment explanation
Indices: 36106374--36108206 Score: 2100
Period size: 500 Copynumber: 3.7 Consensus size: 498
36106364 TCGGCTGGGG
* * * ** **
36106374 CTTAGACAT-GGAATGAACTTCGTATGCCTAAG-CCAACTCATGAAATGAGCATGTAGGCGCTGA
1 CTTAGAC-TGGGAATGAACTTCGTTTGCCTAAGTCAAAC-CATGAAACGAGCGCGCGGGCGCTGA
** * * * * * *
36106437 GCCGGCCTGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGGT
64 GCCGATCGGGGAGGCATAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCATGCTGTCGAT
** * ** **
36106502 CCTGCTGCCACAACCCTTGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
129 CCAACTGCCACAACCCTCGGTCCGGCTGGCACTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * * ** * * *
36106567 AACCCATGAAACGTGCGTGCGAGTGCTCAACCGACCAAAGAGGCAGAATGCACAAGCTGGGGATC
194 AACCCACGAAATGGGCGTACG-GTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATC
* * * * * * **
36106632 GGTCC-GATCCCCTCTGTGTGCTGTTGATCCTGCTGCCGCAACCCTCAGTCCAATCCGATCTTAG
258 -GACCAG-TCCCCCCTATGTGCTGTCGATCCTGCTGCCGCAACCATCGGTCCGGTCCGATCTTAG
* * * * *
36106696 ATTGGGAATGAACTTCGTATGCTTAGGCTGGGGATGAACTCTGTATGCCTAACTCAACCCATGAA
321 ACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCAGGAA
* * ** * * ** ** ** *
36106761 ACGAGCGTGCGATGCTCAG-CCAACCAGAGAGGTAGGATGTGCAAGTCGGGGATCAGCCCGG-TC
386 ACGAGCATGCGGTGCTCAGTCGGACGA-AGAGGCAAAATGCACAAACCGGGGATCAGCCTGGATC
** * * * * * * *
36106824 CCTCCTGTGTGCTGTCGATCCTACTATCGCAACCTTCGGTCTGGTCCGAT
450 CC-CCTGCATGCTATCAATCCTACTACCGAAACCCTCGGTTTGGTCTGAT
* * * * * ** *
36106874 CTTAGACTGGGACTGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCATGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTTCGTTTGCCTAAGTCAAACCATGAAACGAGCGCGCGGGCGCTGAGC
* * * *
36106939 CGATCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCATGCTGTCAATCC
66 CGATCGGGGAGGCATAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCATGCTGTCGAT-C
* * **
36107004 CGA-TGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
130 CAACTGCCACAACCCTCGGTCCGGCTGGCACTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * ** * *
36107068 ACCCACGAAATGGACGTATGGGCGCTCAGCCGGTCGGAGAGGTAGAATGCGCAAGCTGAGGATCG
195 ACCCACGAAATGGGCGTA-CGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCG
* *
36107133 ACCTAGTCCCTCCTATGTGCTGTCGATCCTGCTGTCGCAACCATCAGG-CCGGTCCGATCTTAGA
259 ACC-AGTCCCCCCTATGTGCTGTCGATCCTGCTGCCGCAACCATC-GGTCCGGTCCGATCTTAGA
36107197 CTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCAGGAAA
322 CTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCAGGAAA
* * * **
36107262 TGAGCATGCGGGTGTTCAGTCGGATGAAGAGGCAAAATGCACAAACCACGGATCAGCCTGGATCC
387 CGAGCATGC-GGTGCTCAGTCGGACGAAGAGGCAAAATGCACAAACCGGGGATCAGCCTGGATCC
*
36107327 CCCTGCATGCTATCAATCCTACTACCGAAACCCTCGGTTCGGTCTGAT
451 CCCTGCATGCTATCAATCCTACTACCGAAACCCTCGGTTTGGTCTGAT
** **
36107375 CTTAGACTGGGAATGAACTTCGTTTGCCTAAGTCAAACCACAAAACGAGCGCATGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTTCGTTTGCCTAAGTCAAACCATGAAACGAGCGCGCGGGCGCTGAGC
* * * **
36107440 CGATCGGGGAGGCGTAATGCACAAGTCGAGGATCGGCCC-AGTCCCTTTCTGCATGCTGTCGATC
66 CGATCGGGGAGGCATAATGCACAAGCCGGGGATCGGCCCGA-TCCCCCTCTGCATGCTGTCGATC
* **
36107504 CAACTACCACAACCCTCGGTGTGGCTGGCACTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
130 CAACTGCCACAACCCTCGGTCCGGCTGGCACTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * * * *
36107569 ACCCATGAAATAGGCGTACAGCTGCTCAGCCAACTGGAGAGGTAGAATGCGCAAGTCGAGGATCG
195 ACCCACGAAATGGGCGTAC-GGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCG
* * *
36107634 ACCCAGTCCCTCCTATGTGCTGTCGATCCTGCTGCCACAACCATCGGGCCGGTCCGATCTTAGAC
259 A-CCAGTCCCCCCTATGTGCTGTCGATCCTGCTGCCGCAACCATCGGTCCGGTCCGATCTTAGAC
*
36107699 TGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAGGAAAC
323 TGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCAGGAAAC
36107764 GAGCATGCAGGTGCTCAGTCGGACGAAGAGGCAAAATGCACAAACCGGGGATCAGCCTGGATCCC
388 GAGCATGC-GGTGCTCAGTCGGACGAAGAGGCAAAATGCACAAACCGGGGATCAGCCTGGATCCC
*
36107829 CCTGCATGCTATCAATCCTGCTACCGAAACCCTC-GTTTGGTCTGAT
452 CCTGCATGCTATCAATCCTACTACCGAAACCCTCGGTTTGGTCTGAT
* * *
36107875 CTTAGACTGGGAATCAACTTCATTTGCCTAAGTCAAACCATGAAACGAGCGCGCAGGCGCTGAGC
1 CTTAGACTGGGAATGAACTTCGTTTGCCTAAGTCAAACCATGAAACGAGCGCGCGGGCGCTGAGC
* * * * * * * *
36107940 TGATCGGGGAGGCGTAATGCACAAGCCGGGGATCGGCCCGGTCCCTCTCTGCGTTCTATTGATCC
66 CGATCGGGGAGGCATAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCATGCTGTCGATCC
*
36108005 AACTGCCACAACCCTCGGTCCGGCTGGCACTTAGACATGGAACGAACTCCCTATGCCTAAGCCAA
131 AACTGCCACAACCCTCGGTCCGGCTGGCACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * *
36108070 CCAACGAAATGGGCGTGCGGTTGCTCAGCTGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGG
196 CCCACGAAATGGGCGTACGG-TGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATC-G
* * * ** * * * *
36108135 ACCGGTCCCCCCTGTGTGCTGCCGATCCTGCTATCGCAACCCTCGGTTCGGTTCGATCTTAAACT
259 ACCAGTCCCCCCTATGTGCTGTCGATCCTGCTGCCGCAACCATCGGTCCGGTCCGATCTTAGACT
36108200 GGGAATG
324 GGGAATG
36108207 CTGGGGATGA
Statistics
Matches: 1138, Mismatches: 177, Indels: 36
0.84 0.13 0.03
Matches are distributed among these distances:
499 5 0.00
500 622 0.55
501 502 0.44
502 9 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (498 bp):
CTTAGACTGGGAATGAACTTCGTTTGCCTAAGTCAAACCATGAAACGAGCGCGCGGGCGCTGAGC
CGATCGGGGAGGCATAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCATGCTGTCGATCC
AACTGCCACAACCCTCGGTCCGGCTGGCACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAATGGGCGTACGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGAC
CAGTCCCCCCTATGTGCTGTCGATCCTGCTGCCGCAACCATCGGTCCGGTCCGATCTTAGACTGG
GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCAGGAAACGAG
CATGCGGTGCTCAGTCGGACGAAGAGGCAAAATGCACAAACCGGGGATCAGCCTGGATCCCCCTG
CATGCTATCAATCCTACTACCGAAACCCTCGGTTTGGTCTGAT
Found at i:36109820 original size:26 final size:26
Alignment explanation
Indices: 36109782--36109832 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
36109772 GCTCAAAATC
*
36109782 TTAGACTGAGAATGAACTCTGTATGG
1 TTAGACTGAGAATGAACTCCGTATGG
*
36109808 TTAGACATG-GAATGAATTCCGTATG
1 TTAGAC-TGAGAATGAACTCCGTATG
36109833 CCTAAGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGG
Found at i:36110176 original size:159 final size:157
Alignment explanation
Indices: 36109808--36110252 Score: 428
Period size: 159 Copynumber: 2.8 Consensus size: 157
36109798 CTCTGTATGG
* * *
36109808 TTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAGCT
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTG-TTAGCT
* * ** * * * ** **
36109873 GGTCGGAGAGGTAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCCTGTGTGCTGTTGATCTTG
65 GATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGCCGATCCCG
* * * * * *
36109938 CTATCACAACCCTTGGTTCGCTCCGATC
130 CTACCACAACCATCGGTCCGCTCAGAGC
* * * * * *
36109966 TCAGAC-TAGGAATGAACTCCGTATGCATATGTCAACCCACGAAACGAGCGTGCGGATGTTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGTT-AGC
* * * *
36110030 CGATCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTCTGCATGCTGCCGATCC
64 TGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCC-CTGCGTGCTGCCGATCC
* *
36110095 CGCTGCCACAACCATCGGTCCGACT-AGGGC
128 CGCTACCACAACCATCGGTCCG-CTCAGAGC
* * * * * *
36110125 TTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCATGAAACGGGCGTGTGGGCGCTTAGTT
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTG-TTAGCT
* * * *
36110190 GAACGGAGAGGCAGAATGAGCAAGCCGGGGATC-GACTCGATCCCCCCTGCGTGCTGCCGATCC
65 GATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCT-GGTCCCCCCTGCGTGCTGCCGATCC
36110253 TACTGGCGCA
Statistics
Matches: 228, Mismatches: 52, Indels: 14
0.78 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 108 0.47
159 113 0.50
160 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGTTAGCTG
ATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGCCGATCCCGC
TACCACAACCATCGGTCCGCTCAGAGC
Found at i:36110311 original size:26 final size:26
Alignment explanation
Indices: 36110282--36110334 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36110272 CCAGTCTGAT
*
36110282 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
36110308 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
36110334 C
1 C
36110335 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:36111022 original size:159 final size:158
Alignment explanation
Indices: 36110684--36111770 Score: 704
Period size: 159 Copynumber: 6.9 Consensus size: 158
36110674 GCTTAGATGT
* * *
36110684 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGTGCGCTCAACCGATC-GGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCAGGA
* * ** ** * * * * * **
36110748 GAGGCAGAATGCGTAAATCGGGGATCGGCCTGGATCTCCC-TGCGTGCTGTCGATCCTGCTATCA
66 GA-GTATAATGCACAAGCCGAGGATCAGCCCGG-TCCCCCTTGCGTGCTGCCGATCCTGCTGCCA
* ** * *
36110812 AAACCCTCAATCCAG-TCTGATCTTAGACTG
129 CAACCCTCGGTCCAGTTC-GAGCATAGACTG
* * * *
36110842 GGAAGGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGGTC-GG-
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCAGGA
** * * *
36110905 GTAGTCATAATGTGCAAGCCGAGGATCAGCCCGGTCCCCCTCTACGTGTTGCCGGTCCTGCTGCC
66 G-AGT-ATAATGCACAAGCCGAGGATCAGCCCGGTCCCCCT-TGCGTGCTGCCGATCCTGCTGCC
* * * * *
36110970 ACAACCCTCGGTCCAGCTGGGGCTTAAACAT-
128 ACAACCCTCGGTCCAGTTCGAGCATAGAC-TG
* * * * * * * *
36111001 GGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGGGCGTACGGGAGCTCAGTCGGCCA-AA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCAGGA
* * * ** * * * * **
36111065 GAGGTAGAAAGCATAAGCCGAGGATCAGCTTGGTCCCCCTTGCGTGCTGTCGATCTTACTGTCGT
66 GA-GTATAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTTGCGTGCTGCCGATCCTGCTGCCAC
* *
36111130 AACCCTCGGTTCAGTTCGATCATAGACTG
130 AACCCTCGGTCCAGTTCGAGCATAGACTG
* * * *
36111159 GGAATGAACTCCGTATGCCTAAGCGAACCCACGAAATGAGCGTGCGGGCGTTCAGCCGG-CTGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCAGGA
* * * ** *
36111223 GAGGTAGAATGCACAAGCC-AGGGATTAGCCCAGTCCACCCTTGCGTGCTATCGATCCTGCTACC
66 GA-GTATAATGCACAAGCCGA-GGATCAGCCCGGTCC-CCCTTGCGTGCTGCCGATCCTGCTGCC
** * * * * * *
36111287 GTAAACCTTGGTCCAATCCGATCTTAGACTG
128 ACAACCCTCGGTCCAGTTCGAGCATAGACTG
* * * *
36111318 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTAAGCCGGTC-GGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCAGGA
* * * * *
36111382 GAGGCATAATGCACAAGCCGGGGATC-GACCTGGTCCCCCTCTGCATGCTGCCTG-TCCCGCTGC
66 GA-GTATAATGCACAAGCCGAGGATCAG-CCCGGTCCCCCT-TGCGTGCTGCC-GATCCTGCTGC
* * *
36111445 CACAACCCTCAGTCC-GATTGGGGCATAGACAT-
127 CACAACCCTCGGTCCAG-TTCGAGCATAGAC-TG
* * * * * **
36111477 GGAATGAACTCCTTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTCTA-CCAATCA-G
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC-AGCCGGTCAGG
* * * ** * * * **
36111540 AGAGGTACAATGCACAATCC-AGGGATCATCCCAATCCCCCCTGTGTGCTACCGATCCTATTGCC
65 AGA-GTATAATGCACAAGCCGA-GGATCAGCCCGGTCCCCCTTGCGTGCTGCCGATCCTGCTGCC
* * * *
36111604 GCAACCCTCGGTCC-GATTCGATCTTTGACTG
128 ACAACCCTCGGTCCAG-TTCGAGCATAGACTG
* * * * * * * *
36111635 GGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCACTGAGCTGATC-GAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCAGGA
* * * * * * * *
36111699 AAGGCATAATGCGCAAGCCAGGGGATCAGACC-TTCCCCC-TGCATGCTGCCGATCCTGCTACCA
66 GA-GTATAATGCACAAGCC-GAGGATCAGCCCGGTCCCCCTTGCGTGCTGCCGATCCTGCTGCCA
*
36111762 TAACCCTCG
129 CAACCCTCG
36111771 TCCGGTCGGA
Statistics
Matches: 716, Mismatches: 183, Indels: 61
0.75 0.19 0.06
Matches are distributed among these distances:
157 38 0.05
158 304 0.42
159 365 0.51
160 9 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCAGGA
GAGTATAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTTGCGTGCTGCCGATCCTGCTGCCACA
ACCCTCGGTCCAGTTCGAGCATAGACTG
Found at i:36111283 original size:317 final size:317
Alignment explanation
Indices: 36110683--36111283 Score: 669
Period size: 317 Copynumber: 1.9 Consensus size: 317
36110673 TGCTTAGATG
* * * * * * **
36110683 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGTGCGCTCAACCGATCGGA
1 TGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGAGCTCAACCGACCAAA
* * * * * * *
36110748 GAGGCAGAATGCGTAAATCGGGGATCGGCCTGGATCTCCCTGCGTGCTGTCGATCCTGCTATCAA
66 GAGGCAGAAAGCATAAACCGAGGATCAGCCTGGATCCCCCTGCGTGCTGTCGATCCTACTATCAA
* *
36110813 AACCCTCAATCCAGTCTGATCTTAGACTGGGAAGGAACTCTGTATGCCTAAGTCAACCCACGAAA
131 AACCCTCAATCCAGTCTGATCATAGACTGGGAAGGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * ** *
36110878 CGAGCGTGCGGGCGCTGAGCCGGTCGGGTAGTCATAATGTGCAAGCCGAGGATCAGCCCGGTCCC
196 CGAGCGTGCGGGCGCTCAGCCGGTCGGGTAGTCAGAATGCACAAGCCGAGGATCAGCCCAGTCCC
* * *
36110943 CCTCTACGTGTTGCCGGTCCTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAAACA
261 CCTCTACGTGCTACCGATCCTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAAACA
* ** *
36111000 TGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGGGCGTACGGGAGCTCAGTCGGCCAAA
1 TGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGAGCTCAACCGACCAAA
* * * * * *
36111065 GAGGTAGAAAGCATAAGCCGAGGATCAGCTTGG-TCCCCCTTGCGTGCTGTCGATCTTACTGTCG
66 GAGGCAGAAAGCATAAACCGAGGATCAGCCTGGATCCCCC-TGCGTGCTGTCGATCCTACTATCA
* ** * *
36111129 TAACCCTCGGTTCAGT-TCGATCATAGACTGGGAATGAACTCCGTATGCCTAAG-CGAACCCACG
130 AAACCCTCAATCCAGTCT-GATCATAGACTGGGAAGGAACTCCGTATGCCTAAGTC-AACCCACG
* * *
36111192 AAATGAGCGTGCGGGCGTTCAGCCGG-CTGGAG-AGGT-AGAATGCACAAGCC-AGGGATTAGCC
193 AAACGAGCGTGCGGGCGCTCAGCCGGTC-GG-GTA-GTCAGAATGCACAAGCCGA-GGATCAGCC
* *
36111253 CAGTCCACCCT-TGCGTGCTATCGATCCTGCT
254 CAGTCC-CCCTCTACGTGCTACCGATCCTGCT
36111284 ACCGTAAACC
Statistics
Matches: 231, Mismatches: 45, Indels: 16
0.79 0.15 0.05
Matches are distributed among these distances:
316 9 0.04
317 215 0.93
318 7 0.03
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (317 bp):
TGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGAGCTCAACCGACCAAA
GAGGCAGAAAGCATAAACCGAGGATCAGCCTGGATCCCCCTGCGTGCTGTCGATCCTACTATCAA
AACCCTCAATCCAGTCTGATCATAGACTGGGAAGGAACTCCGTATGCCTAAGTCAACCCACGAAA
CGAGCGTGCGGGCGCTCAGCCGGTCGGGTAGTCAGAATGCACAAGCCGAGGATCAGCCCAGTCCC
CCTCTACGTGCTACCGATCCTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAAACA
Found at i:36111324 original size:317 final size:317
Alignment explanation
Indices: 36111001--36111682 Score: 732
Period size: 317 Copynumber: 2.2 Consensus size: 317
36110991 GCTTAAACAT
* * * * * *
36111001 GGAATGAACTCCCTATGCCTAAGCCAACCCA-AGAAACGGGCGTACGGGAGCTCAGTCGGCCAAA
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACA-AAACGAGCGTGCGGGAGCTAAGCCGGCCAAA
* * * * * ** *
36111065 GAGGTAGAAAGCATAAGCCGAGGATC-AGCTTGGTCCCCCT-TGCGTGCTGTC-GATCTTACTGT
65 GAGGCAGAAAGCACAAGCCGAGGATCGA-CCTGGTCCCCCTCTGCATGCTGCCTG-TCCCACTGC
** * * *
36111127 CGTAACCCTCGGTTCAG-TTCGATCATAGAC-TGGGAATGAACTCCGTATGCCTAAGCGAACCCA
128 CACAACCCTCAG-TCAGATTCGAGCATAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA
** ** * * *
36111190 CGAAATGAGCGTGCGGGCGTTC-AGCC-GGCTGGAGAGGTAGAATGCACAAGCCAGGGATTAGCC
191 CGAAATGAGCGTGCGGGCACTCTA-CCAATC-AGAGAGGTACAATGCACAAGCCAGGGATCAGCC
* * * * * *
36111253 CAGTCCACCCTTGCGTGCTATCGATCCTGCTACCGTAAACCTTGGTCCAATCCGATCTTAGACTG
254 CAATCC-CCCCTGCGTGCTACCGATCCTACTACCGCAAACCTCGGTCCAATCCGATCTTAGACTG
* * **
36111318 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTAAGCCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGAGCTAAGCCGGCCAAAG
* * * *
36111383 AGGCATAATGCACAAGCCGGGGATCGACCTGGTCCCCCTCTGCATGCTGCCTGTCCCGCTGCCAC
66 AGGCAGAAAGCACAAGCCGAGGATCGACCTGGTCCCCCTCTGCATGCTGCCTGTCCCACTGCCAC
* * * * *
36111448 AACCCTCAGTCCGATTGGGGCATAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAA
131 AACCCTCAGTCAGATTCGAGCATAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* * *
36111513 TGGGCGTGCGGGCACTCTACCAATCAGAGAGGTACAATGCACAATCCAGGGATCATCCCAATCCC
196 TGAGCGTGCGGGCACTCTACCAATCAGAGAGGTACAATGCACAAGCCAGGGATCAGCCCAATCCC
* * * * * * *
36111578 CCCTGTGTGCTACCGATCCTATTGCCGCAACCCTCGGTCCGATTCGATCTTTGACTG
261 CCCTGCGTGCTACCGATCCTACTACCGCAAACCTCGGTCCAATCCGATCTTAGACTG
*
36111635 GGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGG
36111683 CACTGAGCTG
Statistics
Matches: 301, Mismatches: 56, Indels: 16
0.81 0.15 0.04
Matches are distributed among these distances:
317 180 0.60
318 117 0.39
319 4 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (317 bp):
GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGAGCTAAGCCGGCCAAAG
AGGCAGAAAGCACAAGCCGAGGATCGACCTGGTCCCCCTCTGCATGCTGCCTGTCCCACTGCCAC
AACCCTCAGTCAGATTCGAGCATAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
TGAGCGTGCGGGCACTCTACCAATCAGAGAGGTACAATGCACAAGCCAGGGATCAGCCCAATCCC
CCCTGCGTGCTACCGATCCTACTACCGCAAACCTCGGTCCAATCCGATCTTAGACTG
Found at i:36111612 original size:476 final size:474
Alignment explanation
Indices: 36110684--36111769 Score: 1143
Period size: 476 Copynumber: 2.3 Consensus size: 474
36110674 GCTTAGATGT
*
36110684 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGTGCGCTCAACCGATCGGAG
1 GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAG
** * * * ** * * *
36110749 AGGCAGAATGCGTAAATCGGGGATCGGCCTGGATCTCCCTGCGTGCTGTCGATCCTGCTATCAAA
65 AGGCAGAATGCACAAACCAGGGATCAGCCCAGATCACCCTGCGTGCTATCGATCCTGCTACCAAA
* * * *
36110814 ACCCTCAATCCAGTCTGATCTTAGACTGGGAAGGAACTCTGTATGCCTAAGTCAACCCACGAAAC
130 ACCCTCAATCCAATCCGATCTTAGACTGGGAAGGAACTCCGTATGCCTAAGTCAACCCACAAAAC
* * **
36110879 GAGCGTGCGGGCGCTGAGCCGGTCGGGTAGTCATAATGTGCAAGCCGAGGATCAGCCCGGTCCCC
195 GAGCGTGCGGGCGCTAAGCCGGTCGGGTAGGCATAATGCACAAGCCGAGGATCAGCCCGGTCCCC
* * * * *
36110944 CTCTACGTGTTGCCGGTCCTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAAACATGGAATGAA
260 CTCTACATGCTGCCGGTCCCGCTGCCACAACCCTCAGTCCAGCTGGGGCATAAACATGGAATGAA
* ** *
36111009 CTCCCTATGCCTAAGCCAACCCAAGAAACGGGCGTACGGGAGCTCAGTCGGCCAAAGAGGTAGAA
325 CTCCCTATGCCTAAGCCAACCCAAGAAACGGGCGTACGGGAGCTCAGCCAACCAAAGAGGTACAA
* **** * ** * * *
36111074 AGCATAAGCCGAGGATCAGCTTGGTCCCCCTTGCGTGCTGTCGATCTTACTGTCGTAACCCTCGG
390 AGCACAAGCCGAGGATCAGCCCAATCCCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGG
36111139 TTCAG-TTCGATCATAGACTG
455 -TCAGATTCGATCATAGACTG
* * * *
36111159 GGAATGAACTCCGTATGCCTAAGCGAACCCACGAAATGAGCGTGCGGGCGTTCAGCCG-GCTGGA
1 GGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGCGTGCGGGCGCTCAACCGATC-GGA
* * *
36111223 GAGGTAGAATGCACAAGCCAGGGATTAGCCCAG-TCCACCCTTGCGTGCTATCGATCCTGCTACC
64 GAGGCAGAATGCACAAACCAGGGATCAGCCCAGAT-CACCC-TGCGTGCTATCGATCCTGCTACC
* *** *
36111287 GTAAA-CCTTGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACA
127 -AAAACCCTCAATCCAATCCGATCTTAGACTGGGAAGGAACTCCGTATGCCTAAGTCAACCCACA
* * *
36111351 AAACGAGCGTGCGGGTGCTAAGCCGGTCGGAG-AGGCATAATGCACAAGCCGGGGATC-GACCTG
191 AAACGAGCGTGCGGGCGCTAAGCCGGTCGG-GTAGGCATAATGCACAAGCCGAGGATCAG-CCCG
* * * *
36111414 GTCCCCCTCTGCATGCTGCCTGTCCCGCTGCCACAACCCTCAGTCC-GATTGGGGCATAGACATG
254 GTCCCCCTCTACATGCTGCCGGTCCCGCTGCCACAACCCTCAGTCCAG-CTGGGGCATAAACATG
* * * * * *
36111478 GAATGAACTCCTTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCA-CTCTA-CCAATCAGA
318 GAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGGGCGTACGGG-AGCTC-AGCCAACCAAA
* * * * *
36111541 GAGGTACAATGCACAATCC-AGGGATCATCCCAATCCCCCCTGTGTGCTACCGATCCTATTGCCG
381 GAGGTACAAAGCACAAGCCGA-GGATCAGCCCAATCCCCCCTGCGTGCTACCGATCCTACTGCCG
* * *
36111605 CAACCCTCGGTCCGATTCGATCTTTGACTG
445 CAACCCTCGGTCAGATTCGATCATAGACTG
* * * * * * * *
36111635 GGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCACTGAGCTGATCGAAA
1 GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAG
* * * * * * * ** *
36111700 AGGCATAATGCGCAAGCCAGGGGATCAGACC--TTCCCCCTGCATGCTGCCGATCCTGCTACCAT
65 AGGCAGAATGCACAAACCA-GGGATCAGCCCAGATCACCCTGCGTGCTATCGATCCTGCTACCAA
36111763 AACCCTC
129 AACCCTC
36111770 GTCCGGTCGG
Statistics
Matches: 500, Mismatches: 94, Indels: 35
0.79 0.15 0.06
Matches are distributed among these distances:
473 2 0.00
474 26 0.05
475 92 0.18
476 363 0.73
477 17 0.03
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (474 bp):
GGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGA
GGCAGAATGCACAAACCAGGGATCAGCCCAGATCACCCTGCGTGCTATCGATCCTGCTACCAAAA
CCCTCAATCCAATCCGATCTTAGACTGGGAAGGAACTCCGTATGCCTAAGTCAACCCACAAAACG
AGCGTGCGGGCGCTAAGCCGGTCGGGTAGGCATAATGCACAAGCCGAGGATCAGCCCGGTCCCCC
TCTACATGCTGCCGGTCCCGCTGCCACAACCCTCAGTCCAGCTGGGGCATAAACATGGAATGAAC
TCCCTATGCCTAAGCCAACCCAAGAAACGGGCGTACGGGAGCTCAGCCAACCAAAGAGGTACAAA
GCACAAGCCGAGGATCAGCCCAATCCCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGGT
CAGATTCGATCATAGACTG
Found at i:36111706 original size:317 final size:315
Alignment explanation
Indices: 36111150--36111774 Score: 778
Period size: 317 Copynumber: 2.0 Consensus size: 315
36111140 TCAGTTCGAT
* **
36111150 CATAGACTGGGAATGAACTCCGTATGCCTAAGCGAACCCACGAAATGAGCGTGCGGGCGTTCAGC
1 CATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
* * * * * * *
36111215 CGGCTGGAGAGGTAGAATGCACAAGCCAGGGATTAGCCCAGTCCACCCTTGCGTGCTATCGATCC
66 CAGCTAGAGAGGTACAATGCACAAGCCAGGGATCAGCCCAATCCACCCCTGCGTGCTACCGATCC
* * * *
36111280 TGCTACCGTAAACCTTGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
131 TACTACCGCAAACCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
** * * *
36111345 CCCACAAAACGAGCGTGCGGGTGCTAAGCCGGTCGGAGAGGCATAATGCACAAGCC-GGGGATC-
196 CCCACAAAACGAGCGTGCGGGCACTAAGCCGATCGAAAAGGCATAATGCACAAGCCAGGGGATCA
*
36111408 GACCTGGTCCCCCTCTGCATGCTGCCTG-TCCCGCTGCCACAACCCTCAGTCCGATTGGGG
261 GACCT--T-CCCC-CTGCATGCTGCC-GATCCCGCTACCACAACCCTC-GTCCGATTGGGG
* * *
36111468 CATAGACAT-GGAATGAACTCCTTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTCTA
1 CATAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTC-A
* * * *
36111532 -CCA-ATCAGAGAGGTACAATGCACAATCCAGGGATCATCCCAATCC-CCCCTGTGTGCTACCGA
64 GCCAGCT-AGAGAGGTACAATGCACAAGCCAGGGATCAGCCCAATCCACCCCTGCGTGCTACCGA
* * * * * *
36111594 TCCTATTGCCGCAACCCTCGGTCCGATTCGATCTTTGACTGGGAATGAACTCCGTATGCATAAGT
128 TCCTACTACCGCAAACCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGT
* * *
36111659 CAACCCACAAAACGAGCGTGCGGGCACTGAGCTGATCGAAAAGGCATAATGCGCAAGCCAGGGGA
193 CAACCCACAAAACGAGCGTGCGGGCACTAAGCCGATCGAAAAGGCATAATGCACAAGCCAGGGGA
* *
36111724 TCAGACCTTCCCCCTGCATGCTGCCGATCCTGCTACCATAACCCTCGTCCG
258 TCAGACCTTCCCCCTGCATGCTGCCGATCCCGCTACCACAACCCTCGTCCG
36111775 GTCGGATCTT
Statistics
Matches: 263, Mismatches: 38, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
314 6 0.02
315 28 0.11
316 4 0.02
317 122 0.46
318 96 0.37
319 7 0.03
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (315 bp):
CATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
CAGCTAGAGAGGTACAATGCACAAGCCAGGGATCAGCCCAATCCACCCCTGCGTGCTACCGATCC
TACTACCGCAAACCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
CCCACAAAACGAGCGTGCGGGCACTAAGCCGATCGAAAAGGCATAATGCACAAGCCAGGGGATCA
GACCTTCCCCCTGCATGCTGCCGATCCCGCTACCACAACCCTCGTCCGATTGGGG
Found at i:36112879 original size:26 final size:26
Alignment explanation
Indices: 36112841--36112893 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36112831 GGCTCAAAAT
*
36112841 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
36112867 CTTAGACAT-GGAATGAACCCCGTATG
1 CTTAGAC-TGGGAATGAACCCCGTATG
36112893 C
1 C
36112894 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:36114892 original size:158 final size:158
Alignment explanation
Indices: 36114429--36114929 Score: 421
Period size: 158 Copynumber: 3.2 Consensus size: 158
36114419 AACTCCGTAT
* * * * *
36114429 GCTTAGACAT-GAATGAACTCCGTATGCCTAAGCCAGCCGC-TGAAATGAGCGTGCAGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCACATGAAACGAGCGTGCAGGCGCTCA
* * * ** * * * * *
36114492 GGCGGTCAGAGAGATAGAATGCGCAAGCCGGGGATTGGACCAGTCACCCCCTGCGTGCTATCGAT
66 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTC-CCCCCTGCGTGCTGTCGAT
*
36114557 CCTACTGTCGCAACCTTCAGTCTGGTCCAA
130 CCTACTGTCGCAACC-TCGGTCTGGTCCAA
* ** * * *
36114587 TCTTAGAC-TGGGAATGAACTTTGTATGCATAAGTCAAACCACA--AAACGAGCGTGCGGGCGTT
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAAACCACATGAAACGAGCGTGCAGGCGCT
* * * * * * *
36114649 GAACCGGCCGAAGAGGCATAATGCACAAGTC-AGGGATCGGCCCGGTCCCCCTCTGTGTGCTG-C
64 CAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGGCCCGGTCCCCC-CTGCGTGCTGTC
* * * * * *
36114712 TAGTCC-GCTGCCACAACCCTCGGTCTGG-CTGAG
127 GA-TCCTACTGTCGCAA-CCTCGGTCTGGTC-CAA
* * * *
36114745 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCGAACC-CATGAAACGGGCGTGCAGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCACATGAAACGAGCGTGCAGGCGCTCA
* *
36114809 GCCAGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGATC
66 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
* * *
36114874 CTACTGTCGCAACTCTCGGTCCGATCCGA
131 CTACTGTCGCAAC-CTCGGTCTGGTCCAA
*
36114903 TCTTAGAC-TGGGAATGAACTCCGTATG
1 GCTTAGACAT-GGAATGAACTCCGTATG
36114930 ATTAGACTGG
Statistics
Matches: 260, Mismatches: 65, Indels: 36
0.72 0.18 0.10
Matches are distributed among these distances:
156 2 0.01
157 21 0.08
158 151 0.58
159 81 0.31
160 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCACATGAAACGAGCGTGCAGGCGCTCA
GCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
CTACTGTCGCAACCTCGGTCTGGTCCAA
Found at i:36114934 original size:26 final size:26
Alignment explanation
Indices: 36114905--36114955 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
36114895 CGATCCGATC
*
36114905 TTAGACTGGGAATGAACTCCGTATGA
1 TTAGACTGGGAATAAACTCCGTATGA
* *
36114931 TTAGACTGGGGATAAACTTCGTATG
1 TTAGACTGGGAATAAACTCCGTATG
36114956 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCGTATGA
Found at i:36115305 original size:26 final size:26
Alignment explanation
Indices: 36115265--36115315 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
36115255 TGGTCTGATC
36115265 TTAGACTGAGAATGAACTCCGTATGT
1 TTAGACTGAGAATGAACTCCGTATGT
* *
36115291 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGAGAATGAACTCCGTATG
36115316 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGT
Found at i:36116005 original size:26 final size:26
Alignment explanation
Indices: 36115966--36116018 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
36115956 GGGTCAAAAT
36115966 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
36115992 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
36116018 C
1 C
36116019 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:36117734 original size:26 final size:26
Alignment explanation
Indices: 36117684--36117734 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
36117674 CTGATTTGAT
* **
36117684 CTTAGGCTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36117710 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
36117735 ACCTAGGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.