Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 400 of 402
Found at i:36118012 original size:355 final size:355
Alignment explanation
Indices: 36117493--36118155 Score: 923
Period size: 355 Copynumber: 1.9 Consensus size: 355
36117483 TGTGCTGCCA
* *
36117493 GTCCCGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
1 GTCCCGCTACCACAACCCTCGGTCCAACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * * **
36117558 CCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCGACCGAAGAGGTAGAATGCACAAGCTGGGGA
66 CCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAAAGAGGCAGAATGCACAAGCCAGGGA
* * * * *
36117623 TCGGCCTGATCCCCCCTGCGTGATGCCAATCCTACTACCGCAACCCTCGGT-CTGATTTGATCTT
131 TCGGCCTGATCCCCCCTACGTGATACCAATCCTACTACCGCAACCCTCAGTCCAG-TCTGATCTT
* * * *
36117687 AGGCTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATACCTAGGTCAACCCATG
195 AGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCATG
* * * * * * *
36117752 AAACAAGCATGCGGGTGCTCAGCTGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGT
260 AAACAAGCATGCAGGCGCTCAACCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGT
36117817 CACCCTCTACGTGCTATCAATCTCACTGTCG
325 CACCCTCTACGTGCTATCAATCTCACTGTCG
* * * *
36117848 GTCCTGCTACCACAACCCTCGGTCTAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
1 GTCCCGCTACCACAACCCTCGGTCCAACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * *
36117913 CCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGAGGCAGAATGCGCTAGCCAGGGA
66 CCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAAAGAGGCAGAATGCACAAGCCAGGGA
* * * * * *
36117978 TCGGCCTGGTCCCCCTTACGTGCTATCGATCCTACTGCCGCAACCCTCAGTCCAGTCTGATCTTA
131 TCGGCCTGATCCCCCCTACGTGATACCAATCCTACTACCGCAACCCTCAGTCCAGTCTGATCTTA
* * *
36118043 GACTAGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGA
196 GACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCATGA
* *
36118108 AACAAGCGTGCAGGCGCTCAACCGACCAGAGAGGCAGGATGCGCAAGC
261 AACAAGCATGCAGGCGCTCAACCGACCAGAGAGGCAGAATGCGCAAGC
36118156 TGGGTATCGA
Statistics
Matches: 264, Mismatches: 43, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
355 262 0.99
356 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (355 bp):
GTCCCGCTACCACAACCCTCGGTCCAACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
CCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAAAGAGGCAGAATGCACAAGCCAGGGA
TCGGCCTGATCCCCCCTACGTGATACCAATCCTACTACCGCAACCCTCAGTCCAGTCTGATCTTA
GACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCATGA
AACAAGCATGCAGGCGCTCAACCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTC
ACCCTCTACGTGCTATCAATCTCACTGTCG
Found at i:36118068 original size:26 final size:26
Alignment explanation
Indices: 36118039--36118091 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
36118029 CCAGTCTGAT
36118039 CTTAGACTAGGAATGAAC-TCTGTATG
1 CTTAGACTAGGAATGAACTTC-GTATG
* *
36118065 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
36118091 C
1 C
36118092 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:36119084 original size:158 final size:158
Alignment explanation
Indices: 36118788--36119130 Score: 386
Period size: 158 Copynumber: 2.2 Consensus size: 158
36118778 ACTCCATATG
* * *
36118788 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAACCCACAAAATGAGCGTGCAGGCACTCAG
* * * ** *
36118852 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCCTGTGTGCTATTATCC
65 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCCTACGTGCTATGATCC
* ***
36118917 TACTGCTGCAACCCTTGGT-TCAGTCCAAT
130 TACTACTGCAACCCTCAATCT-AGTCCAAT
* * *** * *
36118946 CTTAGACTGGGAATGAAGTCCGTATGCATAAGTCAACCCATGGAATGAGCGTGCAGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACAAAATGAGCGTGCAGGCACTCAGC
* * * * *
36119011 CGACTGAAGAGGCATAGTGCGCAAGCCGGGGATCGGCCCGAT-CCCCCCTACGTGCTGTCGATCC
66 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCCTACGTGCTAT-GATCC
* * *
36119075 TGCTACTGCAACCCTCAATCTGGTCCGAT
130 TACTACTGCAACCCTCAATCTAGTCCAAT
36119104 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
36119131 TTAGACTGGG
Statistics
Matches: 153, Mismatches: 29, Indels: 6
0.81 0.15 0.03
Matches are distributed among these distances:
157 14 0.09
158 138 0.90
159 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACAAAATGAGCGTGCAGGCACTCAGC
CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCCTACGTGCTATGATCCT
ACTACTGCAACCCTCAATCTAGTCCAAT
Found at i:36119133 original size:26 final size:26
Alignment explanation
Indices: 36119104--36119156 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36119094 CTGGTCCGAT
36119104 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
36119130 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36119156 C
1 C
36119157 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36119824 original size:26 final size:26
Alignment explanation
Indices: 36119773--36119825 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36119763 TAGGTCTGAT
* *
36119773 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
36119799 CTTAGACTGGGGATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
36119825 C
1 C
36119826 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:36120245 original size:355 final size:355
Alignment explanation
Indices: 36119593--36120246 Score: 905
Period size: 355 Copynumber: 1.8 Consensus size: 355
36119583 TCCCGTTGCC
* *
36119593 ACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACGA
1 ACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACGA
* * * * **
36119658 AACAGGCGTGTGGGAGCTCAGCCGACCGGAGAGGCAGAATGTGTAAGCCAGGGATCGACCTGGTC
66 AACAGGCGTGCGGGAGCTCAGCCGACCAGAGAGGCAGAATGAGCAAGCCAGGGATCGACCCAGTC
* * * * * * ** *
36119723 CCCCCTGTGTGCTACCGATCCTGCTGTCGTAACCCTCGATTAGGTCTGATCTTAGACTGGGAATG
131 CCCCCTGCGTACTACCGATCCTACTATCGCAACCCTCGATCAGGTCCAATCTTAGACTAGGAATG
* *
36119788 AACTCCTTATGCTTAGACTGGGGATGAACTACGTATGCCTAAGTCAACCCACGAAATGAGCGTGT
196 AACTCCGTATGCTTAGACTGGGGATGAACTACGTATGCCTAAGTCAACCCACGAAACGAGCGTGT
* * * *
36119853 GGGTGCTCAGCCGGCCAGAGAGGCATAATGTGCAAGCCGGGGATCAGGTCAGTCCTCCATTGCGT
261 GGGCGCTCAACCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGGTCAGTCCTCCATTGCGT
36119918 GCTGTCGATCCCGCTGTCCATCCTGCTGCA
326 GCTGTCGATCCCGCTGTCCATCCTGCTGCA
* * * *
36119948 ACAACCCTCGATTCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCACGA
1 ACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACGA
* * * * *** *
36120013 AA-TGAGCGTGCGGGTGCTCAGCTGATCAGAGAGGCAGAATGAGCAAGTGGGGGATCGGCCCAGT
66 AACAG-GCGTGCGGGAGCTCAGCCGACCAGAGAGGCAGAATGAGCAAGCCAGGGATCGACCCAGT
* * *
36120077 CCCCCCTGCGTACTGCCGATCCTACTATCGCAACCCTCGATCCGGTCCAATCTTATACTAGGAAT
130 CCCCCCTGCGTACTACCGATCCTACTATCGCAACCCTCGATCAGGTCCAATCTTAGACTAGGAAT
* * *
36120142 GAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAGCGTG
195 GAACTCCGTATGCTTAGACTGGGGATGAACTACGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* *
36120207 TGGGCGCTCAACTGGCCAGAGAGGCAGGATGCGCAAGCCG
260 TGGGCGCTCAACCGGCCAGAGAGGCAGAATGCGCAAGCCG
36120247 AGGACCGAAC
Statistics
Matches: 255, Mismatches: 43, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
354 1 0.00
355 254 1.00
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (355 bp):
ACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACGA
AACAGGCGTGCGGGAGCTCAGCCGACCAGAGAGGCAGAATGAGCAAGCCAGGGATCGACCCAGTC
CCCCCTGCGTACTACCGATCCTACTATCGCAACCCTCGATCAGGTCCAATCTTAGACTAGGAATG
AACTCCGTATGCTTAGACTGGGGATGAACTACGTATGCCTAAGTCAACCCACGAAACGAGCGTGT
GGGCGCTCAACCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGGTCAGTCCTCCATTGCGT
GCTGTCGATCCCGCTGTCCATCCTGCTGCA
Found at i:36121911 original size:26 final size:26
Alignment explanation
Indices: 36121873--36121925 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36121863 TGCTCAAAAT
**
36121873 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
*
36121899 CTTAGACAAGGAATGAACTCTGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
36121925 C
1 C
36121926 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:36122935 original size:26 final size:26
Alignment explanation
Indices: 36122897--36122949 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
36122887 GGCTCAAAAT
36122897 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36122923 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
36122949 C
1 C
36122950 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36130394 original size:26 final size:26
Alignment explanation
Indices: 36130356--36130408 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36130346 GGCTCAAAAT
36130356 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
36130382 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
36130408 C
1 C
36130409 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:36130788 original size:159 final size:157
Alignment explanation
Indices: 36130381--36130799 Score: 425
Period size: 158 Copynumber: 2.6 Consensus size: 157
36130371 AACTCCATAT
* *
36130381 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCACTCAC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC-AAAAGAGCGTGCAGGCACTCAG
* * * * * **
36130446 CCGATCGGAGAGGCAGAATATGCAAGCCGGGGATCGACCCGGTCCCCCTGCATGTTGTTAATCTT
65 CTGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCCTGCATGCTGTCAATCCC
** *
36130511 GCTTGCTGCAACCCTCAATCCAGTCTGA
130 GCTTGCCACAACCCTCAATCCAGACTGA
* * * * * *
36130539 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACA-AGCGTGCAGGCGCAC
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA-CAAA-AGAGCGTGCAGGCACTC
* * *
36130602 AG-TCGACCGAAAAGGCATAATGTGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCATGCTGTCA
63 AGCT-GACCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGT-CCCC-CTGCATGCTGTCA
* * * * *
36130666 GTCCCGC-TGCCACAACTCTCGAT-CTGACTGGG
125 ATCCCGCTTGCCACAACCCTCAATCCAGACT-GA
* * *
36130698 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGAAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAA-GAGCGTGCAGGCACTCAG
* * * *
36130763 CTGGCCGGAGAGGTAGAATGCGCAAGACGGGGATCGA
65 CTGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCGA
36130800 TCTGATCCCC
Statistics
Matches: 208, Mismatches: 42, Indels: 21
0.77 0.15 0.08
Matches are distributed among these distances:
157 2 0.01
158 95 0.46
159 94 0.45
160 17 0.08
ACGTcount: A:0.26, C:0.29, G:0.27, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAGAGCGTGCAGGCACTCAGC
TGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCCTGCATGCTGTCAATCCCG
CTTGCCACAACCCTCAATCCAGACTGA
Found at i:36130888 original size:26 final size:26
Alignment explanation
Indices: 36130859--36130908 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
36130849 GTCTGATCTG
*
36130859 AGACTGTGAATGAACTCTGTATGCTT
1 AGACTGGGAATGAACTCTGTATGCTT
* *
36130885 AGACTGGGGATGAGCTCTGTATGC
1 AGACTGGGAATGAACTCTGTATGC
36130909 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (26 bp):
AGACTGGGAATGAACTCTGTATGCTT
Found at i:36131616 original size:26 final size:26
Alignment explanation
Indices: 36131579--36131630 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36131569 GCTCAAAATT
*
36131579 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
36131605 TTAGAC-GTGGAATGAACTCCGTATGC
1 TTAGACTG-GGAATGAACTCCGTATGC
36131631 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:36132798 original size:26 final size:26
Alignment explanation
Indices: 36132760--36132812 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
36132750 GGCTCAAAAT
*
36132760 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACAAACTCCGTATG
* *
36132786 CTTAGACAT-GGAATAAACTTCGTATG
1 CTTAGAC-TGGGAACAAACTCCGTATG
36132812 C
1 C
36132813 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACAAACTCCGTATG
Found at i:36133655 original size:26 final size:26
Alignment explanation
Indices: 36133626--36133678 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36133616 CCGGTCTGAT
*
36133626 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
36133652 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
36133678 C
1 C
36133679 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:36133941 original size:343 final size:342
Alignment explanation
Indices: 36132958--36134048 Score: 982
Period size: 343 Copynumber: 3.1 Consensus size: 342
36132948 TAAACTGGGA
* * * *
36132958 ATGAACTCCATATGCATAAGTCAACCC-----ACGAGCGTGCGGGC-TCTGAGCTGACTGAAGAG
1 ATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCAT-TGAGCCGACCGAAGAG
** * * * * ** * *
36133017 GCATAATGCACAAGTCGGGGATCGACCCGATCCCCCTTTGCGTGTTGTCAGTCCCGTTGCCACAA
65 GCATAATGTGCAAGCCGGGGAT-GACCCGATCCCCCTTTACATGCTACCGGTCCCGCTGCCACAA
* * *
36133082 CCCTCGGTCTGACTGTGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATG
129 CCCTCGGTCTGGCTGAGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG
* * * * ** * *
36133147 GACGTACGGGCGCTCAGCC-AGCCGGAGAGGCAGAATACGTAAGTCGGGGATCAACCCGATCGCC
194 GGCGTACGGGCGCTCAGCCGA-CCGGAGAGGCAGAATGCGAAAGTCGAGGATCGGCCCGGTCCCC
** * ** * *
36133211 CCTATGTGCTGCCGATCCTACTATCGTGACCCTC-AGTCCGAT-TCGATCTTAGATTGGGAATGA
258 CCTGCGTGCTGCCGATCCTGCTATCGCAACCCTCGA-TCCGGTCT-GATCTTAGACTGGGAATGA
*
36133274 ACTCTGTATGCTTAGACTAGGG
321 ACTCCGTATGCTTAGACTAGGG
** * * * **
36133296 ATGAACTCTGTATGCCTAAGTCAACCAACGAAATGAGCGTGTGGCCGTTCAGCCGGTCAGAGAGA
1 ATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGC--GT----G--CA---GG-CATTGAG-
* * * * * * * *
36133361 TCGATCAAAGGGGCATAAT-TCGCAAGCCGGAGATCAGCTCGATCCCCCTCTACATGCGATCGAT
53 CCGACCGAAGAGGCATAATGT-GCAAGCCGGGGATGA-CCCGATCCCCCTTTACATGC--T--A-
* *** * * *
36133425 CCTGCTGCCAGTTCTGCTGCTGTAACCCTCAGTCTGGCTGAGTCTTAGACATGGAATGAACTCCG
111 CC-GGT-CC----C-GCTGCCACAACCCTCGGTCTGGCTGAGGCTTAGACATGGAATGAACTCCC
** * * * * ** * *
36133490 TATGCCTAAGCCAACCCTTGAAACGAGAGTACGGGCACTCAGTAGGCCGGAGAGGTAGAATGCGA
169 TATGCCTAAGCCAACCCACGAAATGGGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGA
* *
36133555 AAGTCGAGGAATCGGCCAGGT-CCCCTTGCGTGCTGCCGATCCTGCTATCGCAACCCTCGATCCG
234 AAGTCGAGG-ATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTATCGCAACCCTCGATCCG
*
36133619 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
298 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGG
36133664 ATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCATTGAGCCGACCGAAGAGG
1 ATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCATTGAGCCGACCGAAGAGG
36133729 CATAATGTGCAAGCCGGGGAATGACCCGATCCCCCTTTACATGCTACCGGTCCCGCTGCCACAAC
66 CATAATGTGCAAGCCGGGG-ATGACCCGATCCCCCTTTACATGCTACCGGTCCCGCTGCCACAAC
* * * * *
36133794 CCTTGGT-TCGGCAGGGGCTTAGACATGTAATGATCTCCCTATGCCTAAGCCAACCCACGAAATG
130 CCTCGGTCT-GGCTGAGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG
* * * * *
36133858 GGCGTGCGGGTGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCC
194 GGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGAAAGTCGAGGATCGGCCCGGTCCCCC
* ** ** *
36133923 CTGCATGCTGTTGATCCTGCTATCGCAACCCTCGATCCGGTCCAATCTCAGACTGGGAATGAACT
259 CTGCGTGCTGCCGATCCTGCTATCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACT
* *
36133988 CGGTATGCTTGGACTAGGG
324 CCGTATGCTTAGACTAGGG
* * *
36134007 ATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAACGTGC
1 ATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGC
36134049 GGGCGCTCAG
Statistics
Matches: 589, Mismatches: 123, Indels: 77
0.75 0.16 0.10
Matches are distributed among these distances:
338 23 0.04
342 11 0.02
343 218 0.37
344 1 0.00
345 2 0.00
348 2 0.00
349 3 0.01
350 2 0.00
351 2 0.00
353 1 0.00
354 2 0.00
355 48 0.08
356 47 0.08
357 2 0.00
358 1 0.00
360 2 0.00
361 1 0.00
362 2 0.00
363 2 0.00
366 2 0.00
367 1 0.00
368 205 0.35
369 9 0.02
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (342 bp):
ATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCATTGAGCCGACCGAAGAGG
CATAATGTGCAAGCCGGGGATGACCCGATCCCCCTTTACATGCTACCGGTCCCGCTGCCACAACC
CTCGGTCTGGCTGAGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGG
CGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGAAAGTCGAGGATCGGCCCGGTCCCCCCT
GCGTGCTGCCGATCCTGCTATCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCC
GTATGCTTAGACTAGGG
Found at i:36136123 original size:159 final size:158
Alignment explanation
Indices: 36135822--36136187 Score: 391
Period size: 159 Copynumber: 2.3 Consensus size: 158
36135812 AACTCCGTAT
* *
36135822 GCTTAGACATGGAATGAACTACGTATGCCTAAGCTAACCCACGAAACGAGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAATGAGCGTACGGGCGCTCAA
* *
36135887 CCGACCAGAGAGGTAGAATGCGCAAGCCAGGGATCGACCTGATCCCCCATTGCATGATGTCGATC
65 CCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCAGATCCCCCATTGCATGATGTCGATC
* * *
36135952 CTATTACAACAACCCTCGGTCTGATTCGA
130 CTACTACAACAACCCTCGATCTGACTCGA
* * * * * *
36135981 TCTTAGTC-TAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTACGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAGCGTACGGGCGCTCA
* * * * * *
36136045 GCCGACC-GAAGAGGCATAATGCGTAAGCCGGGGATCAGCCCAG-TCCCCC-TCTGCATGCTGTC
64 ACCGACCAG-AGAGGCAGAATGCGCAAGCCAGGGATC-GACCAGATCCCCCAT-TGCATGATGTC
* * * * * *
36136107 GGTCCCT-CTGCCACAACCCTCGATCTGGCTGGG
126 GAT-CCTACTACAACAACCCTCGATCTGACTCGA
*
36136140 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATG
36136188 GGCATGCAGG
Statistics
Matches: 169, Mismatches: 31, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
158 3 0.02
159 157 0.93
160 9 0.05
ACGTcount: A:0.27, C:0.29, G:0.25, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAATGAGCGTACGGGCGCTCAAC
CGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCAGATCCCCCATTGCATGATGTCGATCC
TACTACAACAACCCTCGATCTGACTCGA
Found at i:36136326 original size:26 final size:26
Alignment explanation
Indices: 36136297--36136349 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36136287 CCAGTCCGAT
*
36136297 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
36136323 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
36136349 C
1 C
36136350 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:36137384 original size:26 final size:25
Alignment explanation
Indices: 36137349--36137398 Score: 91
Period size: 26 Copynumber: 2.0 Consensus size: 25
36137339 ATCAAAATCT
36137349 TAGACTGGAATGAACTCCGTATGCA
1 TAGACTGGAATGAACTCCGTATGCA
36137374 TAGACATGGAATGAACTCCGTATGC
1 TAGAC-TGGAATGAACTCCGTATGC
36137399 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (25 bp):
TAGACTGGAATGAACTCCGTATGCA
Found at i:36138394 original size:26 final size:26
Alignment explanation
Indices: 36138365--36138416 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36138355 CCAGCACATT
36138365 TTAGAC-TGGGAATGAACTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
36138391 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
36138417 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:36138906 original size:26 final size:26
Alignment explanation
Indices: 36138865--36138917 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36138855 CCGATCCGAT
*
36138865 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36138891 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
36138917 C
1 C
36138918 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36140105 original size:26 final size:26
Alignment explanation
Indices: 36140061--36140113 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
36140051 CCGGTCTGAT
36140061 CTTAGACTGGGAATAAAC-TCTGTATG
1 CTTAGACTGGGAATAAACTTC-GTATG
* *
36140087 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
36140113 C
1 C
36140114 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCGTATG
Found at i:36141162 original size:159 final size:158
Alignment explanation
Indices: 36140807--36141213 Score: 448
Period size: 158 Copynumber: 2.6 Consensus size: 158
36140797 AACTCCGTAT
* * * * * *
36140807 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGTGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
* *
36140872 TCAATCGGAGAGGCAGAATGCGCAAGCCAGGGATTAACCCGATCCCCCCTACGTACTATCGATCC
66 CCAATCGGAGAGGCAGAATGCGCAAGCCAGGGATCAACCCGATCCCCCCTACGTACTATCGATCC
* ** * *
36140937 TGCTGCCGTAACCCTTGGTTTGGTCTGA
131 TGCTGCCATAACCCTCAGTCTGGACTGA
* * * * *
36140965 TCTTAGAC-TGGGAATGAATTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCA
* * * * * * *
36141029 GCCAATCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCC-AGTCCCCCTCTGCGTGCTGTCGG
65 GCCAATCGGAGAGGCAGAATGCGCAAGCCAGGGATCAACCCGA-TCCCCC-CTACGTACTATCGA
* *
36141093 TCTTGCTGCCATAACCCTCAGTCT-GACTGGG
128 TCCTGCTGCCATAACCCTCAGTCTGGACT-GA
*
36141124 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGG--CTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
***
36141187 -CTGGCAGGAGAGGCAGAATGCGCAAGC
66 CCAATC-GGAGAGGCAGAATGCGCAAGC
36141214 TACGGATTAG
Statistics
Matches: 206, Mismatches: 37, Indels: 13
0.80 0.14 0.05
Matches are distributed among these distances:
156 2 0.01
157 26 0.13
158 96 0.47
159 81 0.39
160 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
CCAATCGGAGAGGCAGAATGCGCAAGCCAGGGATCAACCCGATCCCCCCTACGTACTATCGATCC
TGCTGCCATAACCCTCAGTCTGGACTGA
Found at i:36141320 original size:26 final size:26
Alignment explanation
Indices: 36141281--36141333 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36141271 TCGGTCTGAT
*
36141281 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGCGAATGAACTCCATATG
* *
36141307 CTTAGACTGCGAATGAAGTCCTTATG
1 CTTAGACTGCGAATGAACTCCATATG
36141333 C
1 C
36141334 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCATATG
Found at i:36142320 original size:314 final size:303
Alignment explanation
Indices: 36141705--36142333 Score: 699
Period size: 314 Copynumber: 2.0 Consensus size: 303
36141695 TGCATGCCAT
* * * * *
36141705 CGATCCCGCAGCGACAATCCTCGGTCCGGCTGGGGTTTAGACATGGAATGAACTCCCTATGCCTA
1 CGATCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCCA
** * * **
36141770 AGCCAACCCATTAAACGGGCGTACGGGCTCTTAGTCGCCGGAGAGGCAGAATGCACAAGCCGGGG
66 AGCCAACCCACGAAACGGGCGTACGGGCTC-TAGCCGCCAGAGAGGCAGAATGCACAAGCCGAAG
* *
36141835 ATCGACCCGGTCCCTCCCTATGTGCTTGTCGCAACCCTCAATCCGTCCGATCTTAGAGTGGGAAT
130 ATCGACCCGGTCCCCCCCTATGTGCTTGTCGCAACCCTCAATCCGTCCGATCTTAGACTGGGAAT
* * * *
36141900 GAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTGAGCCGGCCGGAGAGGCA
195 GAACTCCATATGCCTAAGCCAACCCACAAAACAAGCGTGCGAGCACTGAGCCGACCGGAGAGGCA
* * * * * **
36141965 TAATGCGCAAGTCGAGGATCGGGTCAATCCCTTTGGCGTGCTGC
260 AAATACGCAAGCCGAGGATCAGCTCAATCCCGCTGGCGTGCTGC
* * * *
36142009 CGGTCCCGCTGCCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGGACTCCCTATGCCCA
1 CGATCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCCA
* * *
36142074 AGCCAACCCACGAAACGGGCGTGCGGGCTC-AGCCGACCAGAGAGGCAGAATGCGCAAGTCGAAG
66 AGCCAACCCACGAAACGGGCGTACGGGCTCTAGCCG-CCAGAGAGGCAGAATGCACAAGCCGAAG
* * * *
36142138 ATCGGCCCGG-CCCCCCCTGCATGCTGTCGATCTTGCTATCGCAACCCTCGATCCGGTTCGATGT
130 ATCGACCCGGTCCCCCCCT--A---TGT-G--CTTG---TCGCAACCCTCAATCC-GTCCGATCT
* ** **
36142202 TAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTGCGAGTGCTGAGCCG
183 TAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACAAGCGTGCGAGCACTGAGCCG
* *
36142267 ATCGGAGAGGCAAAATACGCAAGCC-AGGGATCAGCTCGATCCCCGCT-GCGTGCTGC
248 ACCGGAGAGGCAAAATACGCAAGCCGA-GGATCAGCTCAAT-CCCGCTGGCGTGCTGC
*
36142323 CGATCCTGCTG
1 CGATCCCGCTG
36142334 TCGTAACCCT
Statistics
Matches: 266, Mismatches: 44, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
302 11 0.04
303 32 0.12
304 84 0.32
307 3 0.01
308 1 0.00
310 4 0.02
313 16 0.06
314 111 0.42
315 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (303 bp):
CGATCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCCA
AGCCAACCCACGAAACGGGCGTACGGGCTCTAGCCGCCAGAGAGGCAGAATGCACAAGCCGAAGA
TCGACCCGGTCCCCCCCTATGTGCTTGTCGCAACCCTCAATCCGTCCGATCTTAGACTGGGAATG
AACTCCATATGCCTAAGCCAACCCACAAAACAAGCGTGCGAGCACTGAGCCGACCGGAGAGGCAA
AATACGCAAGCCGAGGATCAGCTCAATCCCGCTGGCGTGCTGC
Found at i:36142352 original size:158 final size:156
Alignment explanation
Indices: 36141861--36142384 Score: 507
Period size: 158 Copynumber: 3.3 Consensus size: 156
36141851 CCTATGTGCT
** * * *
36141861 TGTCGCAACCCTCAATCC-GTCCGATCTTAGAGTGGGAATGAACTCCGTATGCCTAAGCCAACCC
1 TGTCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCC
* * * *
36141925 ACGAAACAAGCGTGCGGGCACTGAGCCGGCCGGAGAGGCATAATGCGCAAGTCGAGGATCGGGTC
66 ACGAAACGAGCGTGCGGG--CTGAGCCGACCGGAGAGGCAAAATGCGCAAGTCGAGGATCGGCTC
* ** * *
36141990 AAT-CCCTTTGGCGTGCTGCCGGTCCCGC
129 GATCCCCCCT-GCGTGCTGCCGATCCTGC
* * * * ** * * *
36142018 TGCCACAACCCTCGGTCTGGTTGGGGCTTAGACAT-GGAATGGACTCCCTATGCCCAAGCCAACC
1 TGTCGCAACCCTCGGTCCGGTTCGATCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACC
* * * * * *
36142082 CACGAAACGGGCGTGCGGGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGTCGAAGATCGGCCCG
65 CACGAAACGAGCGTGCGGGCTGAGCCGACCGGAGAGGCAAAATGCGCAAGTCGAGGATCGGCTCG
** * * *
36142147 GCCCCCCCTGCATGCTGTCGATCTTGC
130 ATCCCCCCTGCGTGCTGCCGATCCTGC
* * * *
36142174 TATCGCAACCCTCGATCCGGTTCGATGTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCC
1 TGTCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCC
* * * * * *
36142239 ACAAAATGAGCGTGCGAGTGCTGAGCCGATCGGAGAGGCAAAATACGCAAG-CCAGGGATCAGCT
66 ACGAAACGAGCGTGCG-G-GCTGAGCCGACCGGAGAGGCAAAATGCGCAAGTCGA-GGATCGGCT
*
36142303 CGATCCCCGCTGCGTGCTGCCGATCCTGC
128 CGATCCCCCCTGCGTGCTGCCGATCCTGC
* * * * *
36142332 TGTCGTAACCCTTGGGCCGGTGCAATCTTAGACTGGGAATGAACTCCATATGC
1 TGTCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCATATGC
36142385 TTAGACTAGG
Statistics
Matches: 289, Mismatches: 71, Indels: 13
0.77 0.19 0.03
Matches are distributed among these distances:
155 1 0.00
156 114 0.39
157 20 0.07
158 153 0.53
159 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
TGTCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCC
ACGAAACGAGCGTGCGGGCTGAGCCGACCGGAGAGGCAAAATGCGCAAGTCGAGGATCGGCTCGA
TCCCCCCTGCGTGCTGCCGATCCTGC
Found at i:36143116 original size:26 final size:26
Alignment explanation
Indices: 36143078--36143130 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36143068 GGCTCAAAAT
36143078 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
36143104 CTTAGACAT-GAAATGAACTTCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
36143130 C
1 C
36143131 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:36143494 original size:159 final size:157
Alignment explanation
Indices: 36143103--36143593 Score: 492
Period size: 159 Copynumber: 3.1 Consensus size: 157
36143093 AACTCCGTAT
* * * *
36143103 GCTTAGACATGAAATGAACTTCGTATGCCTAAGCCAACCCATG-AACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * *
36143167 CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATAGGACTGGTCCCCCTGT-GTGCTATCGATTC
66 CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGAT-CGACCAGTCCCCCTCTCGTGCTGTCGATCC
* * *
36143231 TGGTACCACAACCCTCGATCCGGTCTGA
130 TGCTGCCACAACCCTCGGTCCGGTCTGA
* * * * * * * * *
36143259 TCTTAGAC-TGGAATGAACTCTGTATGCATAAGTCAACCAACGAAACGAGCGTACAGGCACTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
36143323 CCAACCAAAGAGGCATAATGCGCAATCCGGGGATCGATCCAGTCCCCCTCTACGTGCTGTCGGTC
66 CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCAGTCCCCCTCT-CGTGCTGTCGATC
* * * *
36143388 CCGCTGCCACAACCCTTGGTCTGG-CTGGG
129 CTGCTGCCACAACCCTCGGTCCGGTCT-GA
* *
36143417 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
36143482 CCGACTAGAGAGGTAGAATGCGCAAGCCAGGGATCCACCCGATCCCCC-CTGCGTGCTGTCGATC
66 CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCAG-TCCCCCTCT-CGTGCTGTCGATC
* **
36143546 CTGCTGCCGCAACCCTCGGTCCATTC-GA
129 CTGCTGCCACAACCCTCGGTCCGGTCTGA
*
36143574 TCTTAGAC-TGGGAATGAACT
1 GCTTAGACAT-GGAATGAACT
36143594 ACATATGCTT
Statistics
Matches: 265, Mismatches: 61, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
155 29 0.11
156 64 0.24
157 20 0.08
158 70 0.26
159 82 0.31
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCAGTCCCCCTCTCGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCGGTCTGA
Found at i:36143910 original size:159 final size:158
Alignment explanation
Indices: 36143673--36144103 Score: 382
Period size: 159 Copynumber: 2.7 Consensus size: 158
36143663 AGCCGACCAG
* ** * * * ** * ** *
36143673 AGAGGCAGAATGCGTAAGCTGGGGATCGGCCTGATCCCCCCTGCGTACTATCGATCTTGCTTGCT
1 AGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCTCTGCGTGCTGCCAATCCCGC-TGCC
* * * * *
36143738 GCAACCTTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCATAAATCAACCCATAA
65 ACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCATAAACCAACCCACAA
* * * * *
36143803 AATGAGCGTGCGGGCGCTGAGCCTG-TCGG
130 AACGAGCGTGCGGGCGATCAACC-GATCGA
* * * ***
36143832 AGAGGCATAATGTGCAAGCCGGGGATCGGCCC-AGTCCCTCTCTGCGTGCTGCTGGTCCCGCTGC
1 AGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGA-TCCC-CTCTGCGTGCTGCCAATCCCGCTGC
* ** ** * * * *
36143896 CACAACCCTCGGTCCAGTTGGGGCTTAGTCAT-GGAATGAACTCCTTATGCCTAACCCAACCCAC
64 CACAACCCTCGGTCCGGTCCGATCTTAGAC-TGGGAATGAACTCCATATGCATAAACCAACCCAC
* * *
36143960 GAAACGGGCGTGCGGGGGATCAACCGATCGA
128 AAAACGAGCGTGCGGGCGATCAACCGATCGA
* *
36143991 AGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCTCTGCGTGCTGCCAATCCTGCTGTCA
1 AGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCTCTGCGTGCTGCCAATCCCGCTGCCA
* * * *
36144056 CAACCCTCGATCCGGTCTGATCTGAGACTGGGAATGAACTCCGTATGC
66 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGC
36144104 TTAGACTAGG
Statistics
Matches: 213, Mismatches: 53, Indels: 13
0.76 0.19 0.05
Matches are distributed among these distances:
157 1 0.00
158 61 0.29
159 135 0.63
160 16 0.08
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.21
Consensus pattern (158 bp):
AGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCTCTGCGTGCTGCCAATCCCGCTGCCA
CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCATAAACCAACCCACAAA
ACGAGCGTGCGGGCGATCAACCGATCGA
Found at i:36144109 original size:26 final size:26
Alignment explanation
Indices: 36144080--36144129 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
36144070 GTCTGATCTG
36144080 AGACT-GGGAATGAACTCCGTATGCTT
1 AGACTAGGG-ATGAACTCCGTATGCTT
36144106 AGACTAGGGATGAACTCCGTATGC
1 AGACTAGGGATGAACTCCGTATGC
36144130 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
AGACTAGGGATGAACTCCGTATGCTT
Found at i:36144837 original size:26 final size:26
Alignment explanation
Indices: 36144799--36144851 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
36144789 GGCTCAAAAT
36144799 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36144825 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
36144851 C
1 C
36144852 CTAATCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36145663 original size:26 final size:26
Alignment explanation
Indices: 36145627--36145679 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36145617 CTGGTCTGAT
*
36145627 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
36145653 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
36145679 C
1 C
36145680 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:36146386 original size:26 final size:26
Alignment explanation
Indices: 36146348--36146400 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
36146338 GGCTCAAAAT
36146348 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36146374 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
36146400 C
1 C
36146401 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36146673 original size:159 final size:159
Alignment explanation
Indices: 36146374--36146876 Score: 426
Period size: 159 Copynumber: 3.2 Consensus size: 159
36146364 ACTCCGTATG
* ** * *
36146374 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACAAGCGTGCGGGCGCTCAAC
* * * * * *
36146439 TGACCAGAAAGGCAGAATGCACATGCCGGGGATCGGCCCGGTCCCCCACTGTGTGCTGTCGATCC
66 TCAACAGAAAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCACTGCGTGCTGCCGATCC
**
36146504 TACTGGCACAACCCTCGGTCCAGTCTGAT
131 TACTACCACAACCCTCGGTCCAGTCTGAT
* * *
36146533 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACAAGCGTGCGGGCGTTGAA
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACAAAACAAGCGTGCGGGCGCTCAA
* * * * *
36146597 C-CAACTGAAGAGGCATATTGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGGT
65 CTCAACAGAA-AGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCACTGCGTGCTGCCGAT
* * * **
36146661 CCTGCTACCACAACCCTCGGTTC-GACTGGGG
129 CCTACTACCACAACCCTCGGTCCAGTCT-GAT
* * * ** *** ** * * *
36146692 CTTAGACATGAAATGAACTCTC-TATACGTAAGCCAACGGATGGAACGGGCATGCGGGTGCTCAG
1 CTTAGACATGGAATGAACTC-CGTATGCATAAGCCAACCCACAAAACAAGCGTGCGGGCGCTCAA
* * * * * * *
36146756 C-CGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGATCCCCC-CTGCGTGCTGTCGAT
65 CTC-AACAGAAAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCACTGCGTGCTGCCGAT
* ** * * *
36146819 CCTACTGCTGCAACCCTTGGTCCGGTCCGAT
129 CCTACTACCACAACCCTCGGTCCAGTCTGAT
*
36146850 CTTTGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
36146877 TTAGATTGGG
Statistics
Matches: 270, Mismatches: 65, Indels: 19
0.76 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 60 0.22
159 202 0.75
160 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACAAGCGTGCGGGCGCTCAAC
TCAACAGAAAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCACTGCGTGCTGCCGATCC
TACTACCACAACCCTCGGTCCAGTCTGAT
Found at i:36147024 original size:12 final size:12
Alignment explanation
Indices: 36147007--36147048 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
36146997 ACCTCTGTGT
36147007 GCTGCCGATCCC
1 GCTGCCGATCCC
36147019 GCTGCCGATCCC
1 GCTGCCGATCCC
* *
36147031 GCTGCCGGTCCT
1 GCTGCCGATCCC
36147043 GCTGCC
1 GCTGCC
36147049 ACAACCCTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.05, C:0.48, G:0.29, T:0.19
Consensus pattern (12 bp):
GCTGCCGATCCC
Found at i:36147292 original size:26 final size:26
Alignment explanation
Indices: 36147236--36147312 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
36147226 TCGATCCGAT
* *
36147236 CTTAGAC-TAGGAATGAGC-TCTTATG
1 CTTAGACAT-GGAATGAACTTCGTATG
36147261 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
*
36147287 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
36147313 TCTAAGCCAA
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
25 15 0.32
26 32 0.68
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:36154058 original size:26 final size:26
Alignment explanation
Indices: 36154020--36154072 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
36154010 GGCTTAAAAT
36154020 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
36154046 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
36154072 C
1 C
36154073 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:36154986 original size:158 final size:158
Alignment explanation
Indices: 36154698--36154988 Score: 379
Period size: 158 Copynumber: 1.8 Consensus size: 158
36154688 CTTGCTACTG
* *
36154698 ATCCTACTACCACAACCCTCGGTCTGACTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAG
1 ATCCTACTACCACAACCATCAGTCTGACTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAG
* * * * * *
36154763 CCAACCCACGAAACGAGCGTGTGGGTGCTCAGTCAGCTGGAGAGCTAGAATGTGCAAGTCGGGGA
66 CCAACCCACGAAACGAGCATGGGGGCGCTCAGCCAGCTGAAGAGCTAAAATGTGCAAGTCGGGGA
36154828 TCGGCTCGGTCCCCTCGACATGTTGCCA
131 TCGGCTCGGTCCCCTCGACATGTTGCCA
** * * *
36154856 ATCCTACTTTCACAACCATCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
1 ATCCTACTACCACAACCATCAGTCTGACTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAG
** * * * *
36154921 CCAACTGATGAAACGGGCATGGGGGCGCTCAGCC-GGTCGAAGAGGTAAAATGTGCAAG-CTGGG
66 CCAACCCACGAAACGAGCATGGGGGCGCTCAGCCAGCT-GAAGAGCTAAAATGTGCAAGTC-GGG
36154984 GATCG
129 GATCG
36154989 ACCCGATCCC
Statistics
Matches: 112, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
157 3 0.03
158 109 0.97
ACGTcount: A:0.25, C:0.26, G:0.28, T:0.20
Consensus pattern (158 bp):
ATCCTACTACCACAACCATCAGTCTGACTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAG
CCAACCCACGAAACGAGCATGGGGGCGCTCAGCCAGCTGAAGAGCTAAAATGTGCAAGTCGGGGA
TCGGCTCGGTCCCCTCGACATGTTGCCA
Found at i:36155018 original size:158 final size:158
Alignment explanation
Indices: 36154690--36155037 Score: 367
Period size: 158 Copynumber: 2.2 Consensus size: 158
36154680 CTGCCGATCT
* * *
36154690 TGCTACTGATCCTACTACCACAACCCTCGGTCTGACTAGGGCTTAGACATGGAATGAACTCCATA
1 TGCTGCTGATCCTACTACCACAACCATCAGTCTGACTAGGGCTTAGACATGGAATGAACTCCATA
* * * * * *
36154755 TGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAGTCAGCTGGAGAGCTAGAATGTGCAA
66 TGCCTAAGCCAACCCACGAAACGAGCATGGGGGCGCTCAGCCAGCTGAAGAGCTAAAATGTGCAA
* * * *
36154820 GTCGGGGATCGGCTCGGTCCCCTCGACA
131 GTCGGGGATCGACCCGATCCCCCCGACA
* ** ** * * *
36154848 TGTTGCCAATCCTACTTTCACAACCATCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTA
1 TGCTGCTGATCCTACTACCACAACCATCAGTCTGACTAGGGCTTAGACATGGAATGAACTCCATA
** * * * *
36154913 TGCCTAAGCCAACTGATGAAACGGGCATGGGGGCGCTCAGCC-GGTCGAAGAGGTAAAATGTGCA
66 TGCCTAAGCCAACCCACGAAACGAGCATGGGGGCGCTCAGCCAGCT-GAAGAGCTAAAATGTGCA
* *
36154977 AG-CTGGGGATCGACCCGATCCCCCCTACG
130 AGTC-GGGGATCGACCCGATCCCCCCGACA
* * * *
36155006 TGCTGTTGATCCTGCTACCTCAACCCTCAGTC
1 TGCTGCTGATCCTACTACCACAACCATCAGTC
36155038 CAATCTGATC
Statistics
Matches: 150, Mismatches: 38, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
157 3 0.02
158 147 0.98
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
TGCTGCTGATCCTACTACCACAACCATCAGTCTGACTAGGGCTTAGACATGGAATGAACTCCATA
TGCCTAAGCCAACCCACGAAACGAGCATGGGGGCGCTCAGCCAGCTGAAGAGCTAAAATGTGCAA
GTCGGGGATCGACCCGATCCCCCCGACA
Found at i:36155099 original size:26 final size:26
Alignment explanation
Indices: 36155047--36155099 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36155037 CCAATCTGAT
* *
36155047 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGAATG
*
36155073 CTTAGACTGGGGATGAACTCCGAATG
1 CTTAGACTGGGAATGAACTCCGAATG
36155099 C
1 C
36155100 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:36155431 original size:26 final size:26
Alignment explanation
Indices: 36155390--36155442 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
36155380 TCAGTTTGAT
36155390 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
36155416 CTTAGACT-GGATATGAACTTCGTATG
1 CTTAGACTGGGA-ATGAACTTCGTATG
36155442 C
1 C
36155443 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 3 0.12
26 20 0.80
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:36155637 original size:26 final size:26
Alignment explanation
Indices: 36155599--36155651 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
36155589 CCAATCCGAT
36155599 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
36155625 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
36155651 C
1 C
36155652 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:36156151 original size:26 final size:26
Alignment explanation
Indices: 36156100--36156152 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
36156090 CCGATCTGAT
* *
36156100 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
36156126 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
36156152 C
1 C
36156153 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:36156651 original size:26 final size:26
Alignment explanation
Indices: 36156622--36156674 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36156612 CTAATCCGAT
*
36156622 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
36156648 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36156674 C
1 C
36156675 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36156974 original size:26 final size:26
Alignment explanation
Indices: 36156935--36156985 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
36156925 GGTCTGATCA
*
36156935 TAGACTGGGAATGAACTCTATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
36156961 TAGACTGGGGATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
36156986 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:36157697 original size:26 final size:26
Alignment explanation
Indices: 36157659--36157711 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36157649 GGCTTAAAAT
36157659 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
36157685 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
36157711 C
1 C
36157712 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36159884 original size:26 final size:26
Alignment explanation
Indices: 36159846--36159898 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
36159836 GGCTCAAAAT
36159846 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36159872 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
36159898 C
1 C
36159899 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36160298 original size:158 final size:159
Alignment explanation
Indices: 36159871--36160846 Score: 842
Period size: 158 Copynumber: 6.2 Consensus size: 159
36159861 AACTCCGTAT
* * *
36159871 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGAGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
* * * * * * * *
36159936 -C-GACTGTAGAGGCAGAATGCGCATGCCGAGGATCGGCTCGAT-CCCTTCCTGCATGCTGTTGA
66 CCAGCCAG-AGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCT-CTGCGTGCTGTCGA
* *
36159998 TCCTACTGCCGCAACCCTCGGTCCGGTCGGA
129 TCCTGCTGCCGCAACCCTCGGTCCGGTTGGA
* * * * *
36160029 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT-A
* * * * * **
36160093 A--CAGGCTAAAAAGGCATAATGCGCAAGCCGAGGATC-AGCCCGATCCCCCTTTGCGTGCTACC
64 AGCCA-GCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCGATCCCCCTCTGCGTGCTGTC
** * * * *
36160155 GATCCCACTACCACAACCCTCAGTCCGGTTGGG
127 GATCCTGCTGCCGCAACCCTCGGTCCGGTTGGA
* * *
36160188 GCTTAGACATGGAATGAACTCCCTATGCCTAAG-CAACCCACGAAACGCGCGTGCAGGCGCTAAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
* * *
36160252 CCAGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCGACCC-AGT-CCCC-CTGCGTCCTGTCGAT
66 CCAGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGA-TCCCCCTCTGCGTGCTGTCGAT
* *
36160314 CTTGCTGCCGCAACCCTCGATCCGGTCT-GA
130 CCTGCTGCCGCAACCCTCGGTCCGGT-TGGA
** * * * * *
36160344 TATTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCTCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
* * * * ** * *
36160409 TCAGCCGGAGAGGCAGAATGCGTAAGCCGAGGA-CTGGCTTGATCCCCC-CTGTGTGCTATCGAT
66 CCAGCCAGAGAGGCAGAATGCGCAAGCCGAGGATC-GACCCGATCCCCCTCTGCGTGCTGTCGAT
* **
36160472 CCTGCTGCCGCAACCCTCGGTCCGATCCGA
130 CCTGCTGCCGCAACCCTCGGTCCGGTTGGA
* * * * *
36160502 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT-A
* * * * * * * *
36160566 A-CCTA-TCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGCCG
64 AGCC-AGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGTCG
* * * * *
36160629 GTCCCGCTGCCACAACCCTCGGTCCGGCTGGG
128 ATCCTGCTGCCGCAACCCTCGGTCCGGTTGGA
* * * *
36160661 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
* * * * * *
36160726 CCAGCTAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGAT-CCCCTCTGCATGCT-ACAGAT
66 CCAGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGTC-GAT
** * **
36160789 CCAACTGTCGCAACCCTCGGTTTGGTCT-GA
130 CCTGCTGCCGCAACCCTCGGTCCGGT-TGGA
* *
36160819 TCTTAGAC-TAGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
36160847 TTAGACTAGG
Statistics
Matches: 655, Mismatches: 135, Indels: 56
0.77 0.16 0.07
Matches are distributed among these distances:
156 62 0.09
157 69 0.11
158 298 0.45
159 219 0.33
160 7 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
CCAGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATC
CTGCTGCCGCAACCCTCGGTCCGGTTGGA
Found at i:36160740 original size:317 final size:310
Alignment explanation
Indices: 36159872--36160846 Score: 974
Period size: 317 Copynumber: 3.1 Consensus size: 310
36159862 ACTCCGTATG
* * *
36159872 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGAGCTCAGC
1 CTTAGA-ATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCT-AAC
* * * * * * * *
36159937 GACTGTAGAGGCAGAATGCGCATGCCGAGGATCGG-CTCGATCCCTTCCTGCATGCTGTTGATCC
63 CAC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCT-GGTCCCCT-CTGCGTGCTGTCGATCC
* * *
36160001 TACTGCCGCAACCCTCGGTCCGG-TCGGATCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTC
125 TGCTGCCGCAACCCTCGGTCCGGCT-GGATCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCC
* * * * *
36160064 AACCCATGAAACGAGCGTGCGGGCACTGA-ACAGGCTAAAAAGGCATAATGCGCAAGCCGAGGAT
188 AACCCACGAAACGAGCGTGCGGGCACTCAGACA-GCTAGAGAGGCAGAATGCGCAAGCCGAGGAT
* * * * * * * ** **
36160128 CAGCCCGATCCCCCTTTGCGTGCTACCGATCCCACTACCACAACCCTCAGTCCGGTTGGGG
252 CGGCTCGATCCCCC-CTGCGTGCTA-CGATCCAACTGCCGCAACCCTCGGTCCGGTCCGAT
* * *
36160189 CTTAGACATGGAATGAACTCCCTATGCCTAAGCAACCCACGAAACGCGCGTGCAGGCGCTAAGCC
1 CTTAGA-ATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCGCTAA-CC
* * * ** * *
36160254 AGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAGTCCCC-CTGCGTCCTGTCGATCTTG
64 A--CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCTCTGCGTGCTGTCGATCCTG
* *
36160318 CTGCCGCAACCCTCGATCCGGTCT-GATATTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
127 CTGCCGCAACCCTCGGTCCGG-CTGGATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * ** *
36160382 CCACGAAATGAGCGTACAGGCTCTCAGTCAGCCGGAGAGGCAGAATGCGTAAGCCGAGGA-CTGG
191 CCACGAAACGAGCGTGCGGGCACTCAGACAGCTAGAGAGGCAGAATGCGCAAGCCGAGGATC-GG
* * ** *
36160446 CTTGATCCCCCCTGTGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCCGATCCGAT
255 CTCGATCCCCCCTGCGTGCTA-CGATCCAACTGCCGCAACCCTCGGTCCGGTCCGAT
* * *
36160503 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGTTGAAC
1 CTTAGAAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCT-AAC
* * *
36160568 CTATCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGCCGGTCC
63 C-A-CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGT-CCCCTCTGCGTGCTGTCGATCC
* * ** *
36160633 CGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
125 TGCTGCCGCAACCCTCGGTCCGGCTGGATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * *
36160698 CCCACGAAACGGGCGTGCGGGCACTCAGCCAGCTAGAGAGGCAGAATGCGCAAGCCGGGGATCGG
190 CCCACGAAACGAGCGTGCGGGCACTCAGACAGCTAGAGAGGCAGAATGCGCAAGCCGAGGATCGG
* * * ** *
36160763 CTCGATCCCCTCTGCATGCTACAGATCCAACTGTCGCAACCCTCGGTTTGGTCTGAT
255 CTCGATCCCCCCTGCGTGCTAC-GATCCAACTGCCGCAACCCTCGGTCCGGTCCGAT
* *
36160820 CTTAGACTAGGAATGAACTTCGTATGC
1 CTTAGAAT-GGAATGAACTCCGTATGC
36160847 TTAGACTAGG
Statistics
Matches: 537, Mismatches: 103, Indels: 36
0.79 0.15 0.05
Matches are distributed among these distances:
313 1 0.00
314 62 0.12
315 182 0.34
316 39 0.07
317 250 0.47
318 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (310 bp):
CTTAGAATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCGCTAACCAC
GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCTCTGCGTGCTGTCGATCCTGCTGC
CGCAACCCTCGGTCCGGCTGGATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
AAACGAGCGTGCGGGCACTCAGACAGCTAGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGAT
CCCCCCTGCGTGCTACGATCCAACTGCCGCAACCCTCGGTCCGGTCCGAT
Found at i:36160856 original size:26 final size:26
Alignment explanation
Indices: 36160820--36160872 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36160810 TTGGTCTGAT
36160820 CTTAGACTAGGAATGAACTTC-GTATG
1 CTTAGACTAGGAATGAA-TTCTGTATG
*
36160846 CTTAGACTAGGGATGAATTCTGTATG
1 CTTAGACTAGGAATGAATTCTGTATG
36160872 C
1 C
36160873 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAATTCTGTATG
Found at i:36161446 original size:11 final size:11
Alignment explanation
Indices: 36161430--36161454 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
36161420 CGGTTAAGCT
36161430 CTCCGACGATG
1 CTCCGACGATG
36161441 CTCCGACGATG
1 CTCCGACGATG
36161452 CTC
1 CTC
36161455 AGCCATGGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.40, G:0.24, T:0.20
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:36162023 original size:26 final size:26
Alignment explanation
Indices: 36161987--36162039 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36161977 CCAGTCTGAT
*
36161987 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
36162013 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
36162039 C
1 C
36162040 CACGAAACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:36162393 original size:26 final size:26
Alignment explanation
Indices: 36162355--36162407 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36162345 CCGGTTCGAT
*
36162355 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
36162381 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
36162407 C
1 C
36162408 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:36162883 original size:26 final size:26
Alignment explanation
Indices: 36162854--36162905 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
36162844 CCGGTTCAAT
*
36162854 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATAAACTCCGTATGC
* *
36162880 TTAGACTGGGGATAAACTCTGTATGC
1 TTAGACTGGGAATAAACTCCGTATGC
36162906 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCGTATGC
Found at i:36163751 original size:26 final size:25
Alignment explanation
Indices: 36163714--36163765 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 25
36163704 CCGATCCGAT
* *
36163714 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGG-ATGAAATTCGTATG
36163740 CTTAG-CTAGGGATGAAATTCGTATG
1 CTTAGACT-GGGATGAAATTCGTATG
36163765 C
1 C
36163766 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (25 bp):
CTTAGACTGGGATGAAATTCGTATG
Found at i:36164733 original size:158 final size:159
Alignment explanation
Indices: 36164445--36165175 Score: 619
Period size: 158 Copynumber: 4.6 Consensus size: 159
36164435 ACTCCATATG
* * *
36164445 CTTAGACATGGCATAAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-CTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
36164509 CGACCGGAGAGGTAGAATGCACAAGCCAGGGATCGGCTCGGTCCCCCCTTGCGTGCTATCGATCC
66 CGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCTC-TGCGTGCTAGCGATCC
* * *
36164574 TGCTACCGCAAACCTCGATTC-GATCCGAT
130 TGCTGCCACAACCCTCGATTCTGATCCGAT
** * * *
36164603 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTACGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
36164667 CGGCCGAAGAGGCATAATGCGTAAGCCGGGGATCGGCCCGATCCCCTTCTTCGAGCT-GCGGGTC
66 CGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCC-TCTGCGTGCTAGC-GATC
* *
36164731 CTGCTGCCACAACCCTC-AGTCTGA-CTG-T
129 CTGCTGCCACAACCCTCGATTCTGATCCGAT
* *
36164759 GGCTTAGACATGGAATGAAACTCCCTATGCCTAAAGCCAACCCACGAAAC-AGGCGTACGGGCGC
1 --CTTAGACATGGAATG-AACTCCGTATGCCT-AAGCCAACCCACGAAACGA-GCGTGCGGGCGC
* * * * *
36164823 TTAGCC-ACCAGCAGAGGCAGAATGCGCAA-CCAGGGATCGACCTGGTCTCC-CTGCGTGCT-GT
61 TCAGCCGACC-GAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCTCTGCGTGCTAG-
* *
36164884 CGATCCTACTGCCACAACCCTCGA-TCTGATTCGAT
124 CGATCCTGCTGCCACAACCCTCGATTCTGATCCGAT
* * * * * * * * * *
36164919 CTTAGATAGGGAATGAACTCTGTATGCATAAGTCAACCTACGAAATGAGAGTGCGGGCACTGAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * * * *
36164984 CGGTCGAAAAGGCATAATGCGTAAGTC-GAGGATCGGCCCGGTCCCTTTCTGCGTGCTATCGGTC
66 CGACCGAAGAGGCAGAATGCGCAAGCCAG-GGATCGGCCCGGTCCC-CTCTGCGTGCTAGCGATC
* * * * ** **
36165048 CCGCTGCCACAACCCTCG-GTCCGGTTGGGG
129 CTGCTGCCACAACCCTCGATTCTGATCCGAT
* * * * *
36165078 CTTAGACATGGAATGAACTCCCTATGGCTAAGCGAACCCACGAAACGGGCGTGTGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
36165143 CGACCGGAGAGGCAGAATGCGCAAACCAGGGAT
66 CGACCGAAGAGGCAGAATGCGCAAGCCAGGGAT
36165176 TGGCTCGATC
Statistics
Matches: 446, Mismatches: 103, Indels: 47
0.75 0.17 0.08
Matches are distributed among these distances:
156 45 0.10
157 76 0.17
158 126 0.28
159 119 0.27
160 34 0.08
161 46 0.10
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCTCTGCGTGCTAGCGATCCT
GCTGCCACAACCCTCGATTCTGATCCGAT
Found at i:36165021 original size:317 final size:316
Alignment explanation
Indices: 36164444--36165175 Score: 881
Period size: 317 Copynumber: 2.3 Consensus size: 316
36164434 AACTCCATAT
* * *
36164444 GCTTAGACATGGCAT-AAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-CTCA
1 GCTTAGACATGGAATGAAACTCCCTATGCCTAAGCCAACCCACGAAACG-GCGTGCGGGCGCTCA
* * *
36164507 GCCGACCGGAGAGGTAGAATGCACAAGCCAGGGATCGGCTCGGTCCCCCCTTGCGTGCTATCGAT
65 GCCGACCGGAGAGGCAGAATGCGCAA-CCAGGGATCGCCTCGGTCCCCCCTTGCGTGCTATCGAT
* * * *
36164572 CCTGCTACCGCAAACCTCGATTCGATCCGATCTTAGACTGGAATGAACTCCGTATGCCTAAGTTA
129 CCTACTACCACAAACCTCGATTCGATCCGATCTTAGACTGGAATGAACTCCGTATGCATAAGTCA
* * * * * *
36164637 ACCCATGAAACGAGCGTACGGGCGCTCAGTCGGCCGAAGAGGCATAATGCGTAAGCCGGGGATCG
194 ACCCACGAAACGAGAGTACGGGCACTCAGCCGGCCGAAAAGGCATAATGCGTAAGCCGAGGATCG
* * * *
36164702 GCCCGATCCCCTTCTTCGAGCT-GCGGGTCCTGCTGCCACAACCCTCAGTCTGACTGTG
259 GCCCGATCCCCTTCTGCGAGCTAGC-GGTCCCGCTGCCACAACCCTCAGTCCGACTGGG
* *
36164760 GCTTAGACATGGAATGAAACTCCCTATGCCTAAAGCCAACCCACGAAACAGGCGTACGGGCGCTT
1 GCTTAGACATGGAATGAAACTCCCTATGCCT-AAGCCAACCCACGAAAC-GGCGTGCGGGCGCTC
* * *
36164825 AGCC-ACCAGCAGAGGCAGAATGCGCAACCAGGGATCGACCT-GGT-CTCCC-TGCGTGCTGTCG
64 AGCCGACC-GGAGAGGCAGAATGCGCAACCAGGGATCG-CCTCGGTCCCCCCTTGCGTGCTATCG
* * * *
36164886 ATCCTACTGCCACAACCCTCGA-TCTGATTCGATCTTAGA-TAGGGAATGAACTCTGTATGCATA
127 ATCCTACTACCACAAACCTCGATTC-GATCCGATCTTAGACT--GGAATGAACTCCGTATGCATA
* * * * * *
36164949 AGTCAACCTACGAAATGAGAGTGCGGGCACTGAGCCGGTCGAAAAGGCATAATGCGTAAGTCGAG
189 AGTCAACCCACGAAACGAGAGTACGGGCACTCAGCCGGCCGAAAAGGCATAATGCGTAAGCCGAG
* * * * * **
36165014 GATCGGCCCGGTCCCTTTCTGCGTGCTATCGGTCCCGCTGCCACAACCCTCGGTCCGGTTGGG
254 GATCGGCCCGATCCCCTTCTGCGAGCTAGCGGTCCCGCTGCCACAACCCTCAGTCCGACTGGG
* * *
36165077 GCTTAGACATGGAATG-AACTCCCTATGGCTAAGCGAACCCACGAAACGGGCGTGTGGGCGCTCA
1 GCTTAGACATGGAATGAAACTCCCTATGCCTAAGCCAACCCACGAAAC-GGCGTGCGGGCGCTCA
36165141 GCCGACCGGAGAGGCAGAATGCGCAAACCAGGGAT
65 GCCGACCGGAGAGGCAGAATGCGC-AACCAGGGAT
36165176 TGGCTCGATC
Statistics
Matches: 355, Mismatches: 49, Indels: 24
0.83 0.11 0.06
Matches are distributed among these distances:
315 51 0.14
316 82 0.23
317 154 0.43
318 43 0.12
319 25 0.07
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (316 bp):
GCTTAGACATGGAATGAAACTCCCTATGCCTAAGCCAACCCACGAAACGGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAACCAGGGATCGCCTCGGTCCCCCCTTGCGTGCTATCGATCC
TACTACCACAAACCTCGATTCGATCCGATCTTAGACTGGAATGAACTCCGTATGCATAAGTCAAC
CCACGAAACGAGAGTACGGGCACTCAGCCGGCCGAAAAGGCATAATGCGTAAGCCGAGGATCGGC
CCGATCCCCTTCTGCGAGCTAGCGGTCCCGCTGCCACAACCCTCAGTCCGACTGGG
Found at i:36165188 original size:159 final size:158
Alignment explanation
Indices: 36164444--36165198 Score: 643
Period size: 159 Copynumber: 4.8 Consensus size: 158
36164434 AACTCCATAT
* * *
36164444 GCTTAGACATGGCATAAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-CTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * **
36164508 CCGACCGGAGAGGTAGAATGCACAAGCCAGGGATCGGCTCGGTCCCCCCTTGCGTGCTATCGATC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCTTC-TGCGTGCTATCGATC
* * * * *
36164573 CTGCTACCGCAAACCTCGATTCGATCCGA
130 CTGCTGCCACAACCCTCGATCCGATTCGA
* ** * *
36164602 TCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * * *
36164666 TCGGCCGAAGAGGCATAATGCGTAAGCCGGGGATCGGCCCGATCCCCTTCTTCGAGCT-GCGGGT
66 CCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGT-CCCTTCTGCGTGCTATC-GAT
*
36164730 CCTGCTGCCACAACCCTC-AGTCTGACTGT-G-
129 CCTGCTGCCACAACCCTCGA-TCCGA-T-TCGA
* *
36164760 GCTTAGACATGGAATGAAACTCCCTATGCCTAAAGCCAACCCACGAAAC-AGGCGTACGGGCGCT
1 GCTTAGACATGGAATG-AACTCCGTATGCCT-AAGCCAACCCACGAAACGA-GCGTGCGGGCGCT
* * * * *
36164824 TAGCC-ACCAGCAGAGGCAGAATGCGCAA-CCAGGGATCGACCTGGTCTCC--CTGCGTGCTGTC
63 CAGCCGACC-GAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTC-CCTTCTGCGTGCTATC
* *
36164885 GATCCTACTGCCACAACCCTCGATCTGATTCGA
126 GATCCTGCTGCCACAACCCTCGATCCGATTCGA
* * * * * * * * * * *
36164918 TCTTAGATAGGGAATGAACTCTGTATGCATAAGTCAACCTACGAAATGAGAGTGCGGGCACTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * *
36164983 CCGGTCGAAAAGGCATAATGCGTAAGTC-GAGGATCGGCCCGGTCCCTTTCTGCGTGCTATCGGT
66 CCGACCGAAGAGGCAGAATGCGCAAGCCAG-GGATCGGCCCGGTCCC-TTCTGCGTGCTATCGAT
* * * * *
36165047 CCCGCTGCCACAACCCTCGGTCCGGTTGGG
129 CCTGCTGCCACAACCCTCGATCCGATTCGA
* * * * *
36165077 GCTTAGACATGGAATGAACTCCCTATGGCTAAGCGAACCCACGAAACGGGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
36165142 CCGACCGGAGAGGCAGAATGCGCAAACCAGGGATTGGCTCGATCCCTCCTGTGTGCT
66 CCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCTTCTGCGTGCT
36165199 GCTGTAATCC
Statistics
Matches: 463, Mismatches: 110, Indels: 48
0.75 0.18 0.08
Matches are distributed among these distances:
156 47 0.10
157 73 0.16
158 131 0.28
159 134 0.29
160 32 0.07
161 46 0.10
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCTTCTGCGTGCTATCGATCC
TGCTGCCACAACCCTCGATCCGATTCGA
Found at i:36165253 original size:26 final size:26
Alignment explanation
Indices: 36165224--36165276 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
36165214 TCGGTCCGAT
* * *
36165224 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
*
36165250 CTTAAACTGGGGATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
36165276 C
1 C
36165277 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:36166165 original size:158 final size:159
Alignment explanation
Indices: 36165833--36166194 Score: 475
Period size: 158 Copynumber: 2.3 Consensus size: 159
36165823 GCGTGCAAGG
* * * *
36165833 TCGTGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTGAACCGAGGGTTGT
1 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGCAGAACCGAGGGTTGT
* *
36165898 GGCAGCAGGACCGACAGCACGTAGAGGGGGACCAGGTCGATCCCTGGCTTGCGCATTATGCCTCT
66 GGCAGCAGGACCGACAGCACATAGAGGGGGACCAGGCCGATCCCTGGCTTGCGCATTATGCCTCT
*
36165963 CCGATCGGCTCAGCACCCGCACGCTCGTT
131 CCGATCGGCTCAGCACCAGCACGCTCGTT
* * *
36165992 TCGTGGGTTGACTTAGGCATACAGAGTTCATATCCA-GTCTAAG-ATTAGACCAG-ACCGAGGGT
1 TCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCACTAG--CAGAACCGAGGGT
** * * *
36166054 TGTGGCAGCAGGATGGACAGCACATAG-GGGGGA-TAGGGCCGATCCCTGGCTTGCTCATTCTGC
63 TGTGGCAGCAGGACCGACAGCACATAGAGGGGGACCA-GGCCGATCCCTGGCTTGCGCATTATGC
* *
36166117 CTCTCC-AGTCGGCTGAGCGCCAGCACGCTCGTT
127 CTCTCCGA-TCGGCTCAGCACCAGCACGCTCGTT
*
36166150 TTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
36166195 AATAGAGTTC
Statistics
Matches: 176, Mismatches: 20, Indels: 14
0.84 0.10 0.07
Matches are distributed among these distances:
157 6 0.03
158 96 0.55
159 68 0.39
160 6 0.03
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (159 bp):
TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGCAGAACCGAGGGTTGT
GGCAGCAGGACCGACAGCACATAGAGGGGGACCAGGCCGATCCCTGGCTTGCGCATTATGCCTCT
CCGATCGGCTCAGCACCAGCACGCTCGTT
Found at i:36167051 original size:158 final size:156
Alignment explanation
Indices: 36166568--36167073 Score: 466
Period size: 158 Copynumber: 3.2 Consensus size: 156
36166558 CATCCCCAGT
* * *
36166568 CTTA-GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGA
1 CTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGA
** * * *
36166631 TCGGTAGCACGTAGGGGGGACTGGGCCGATCCTCGGCTTACGCATTTTACCTCTCCGATCGGTTG
65 TCGACAGCACGTAGGAGGGAC--GGCCGATCCTCGGCTTACGCATTATACCTCTCCGATCGGCTG
* ***
36166696 AGCACCCGCACCCCCGTTTCGTGGGTTGG
128 AGCGCCCGCACGTTCGTTTCGTGGGTTGG
* ** * * *
36166725 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ATCAAACTGAGGGTTGTGGCAGCGGGA
1 CTTAGGCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCAGACCGAGGGTTGTGGCAGCAGGA
* * * * * * * *
36166789 CCGACAGCACGCAGAGAGGGACCGGGCTGATCCTCGACTTGCGCATTATGCCTCTTCGATTGGCT
65 TCGACAGCACGTAG-GAGGGA-C-GGCCGATCCTCGGCTTACGCATTATACCTCTCCGATCGGCT
* * * *
36166854 CAGCGCCTGCACGCTT-GTTTCGTGGATTGA
127 GAGCGCCCGCACG-TTCGTTTCGTGGGTTGG
* * * *
36166884 CCTATGCATACGGAGTTCATTCC-TAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAACAAGA
1 CTTAGGCATACGGAGTTCATTCCAT-GTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGA
* * * * * ** *
36166948 TCAACAACACATAGGAGGGATCGAGTCGATCC-CTGGCTTACGCATTCTACCTCTCCGGCCAGCT
65 TCGACAGCACGTAGGAGGGA-CG-GCCGATCCTC-GGCTTACGCATTATACCTCTCCGATCGGCT
* *
36167012 GAGCGCCCGCACGTTCGTCTCATGGGTTGG
127 GAGCGCCCGCACGTTCGTTTCGTGGGTTGG
36167042 CTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CTTAGGCATACGGAGTTCATTCCATGTCTAAG
36167074 CATATGGAGT
Statistics
Matches: 272, Mismatches: 65, Indels: 23
0.76 0.18 0.06
Matches are distributed among these distances:
157 11 0.04
158 139 0.51
159 121 0.44
160 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (156 bp):
CTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGAT
CGACAGCACGTAGGAGGGACGGCCGATCCTCGGCTTACGCATTATACCTCTCCGATCGGCTGAGC
GCCCGCACGTTCGTTTCGTGGGTTGG
Found at i:36167076 original size:26 final size:26
Alignment explanation
Indices: 36167047--36167099 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36167037 GTTGGCTTAG
36167047 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
36167073 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
36167099 G
1 G
36167100 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:36169436 original size:26 final size:26
Alignment explanation
Indices: 36169398--36169450 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36169388 GGCTTAAAAT
36169398 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
36169424 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
36169450 C
1 C
36169451 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36171621 original size:26 final size:26
Alignment explanation
Indices: 36171583--36171635 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36171573 GGCTCAAAAT
36171583 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
36171609 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
36171635 C
1 C
36171636 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36172001 original size:159 final size:159
Alignment explanation
Indices: 36171608--36172073 Score: 444
Period size: 158 Copynumber: 2.9 Consensus size: 159
36171598 AACTCCGTAT
* * * *
36171608 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCTCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
* * * * * **
36171673 TC-GATCGGAGAGGCAGAATGCACAAGCCGAGGA-CTAGCCTGATCCCCC-CTGTGTGCTATCGA
66 CCAGCT-GGAGAGGCAGAATGCGCAAGCCGAGGATC-GGCCTGATCCCCCTCTGCGTGCTGCCGA
* * * *
36171735 TCCTGCTGCCGCAACCCTCGGTTTGATCTGA
129 TCCCGCTGCCACAACCCTCGGTTCGAGCTGA
* * * * ** *
36171766 TCTTAGA-TTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCA
* * * ** * * *
36171830 ACCTA-CCGGAGAGGCATAATATGCAAGCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGCCGG
65 GCC-AGCTGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCTGATCCCCCTCTGCGTGCTGCCGA
*
36171894 TCCCGCTGCCACAACCCTCGGTTCG-GCTGGG
129 TCCCGCTGCCACAACCCTCGGTTCGAGCT-GA
* * * *
36171925 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
* * *
36171990 CCAGCTAGAGAGGCAGAATGCGCAAGCCGAGGATCGG-CTCGAT-CCCCTCTGCATGCTGCAGAT
66 CCAGCTGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCT-GATCCCCCTCTGCGTGCTGCCGAT
** * *
36172053 CCAACTGTCGCAACCCTCGGT
130 CCCGCTGCCACAACCCTCGGT
36172074 CTGGTCTGAT
Statistics
Matches: 243, Mismatches: 56, Indels: 18
0.77 0.18 0.06
Matches are distributed among these distances:
157 1 0.00
158 125 0.51
159 116 0.48
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
CCAGCTGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCTGATCCCCCTCTGCGTGCTGCCGATC
CCGCTGCCACAACCCTCGGTTCGAGCTGA
Found at i:36172120 original size:26 final size:26
Alignment explanation
Indices: 36172084--36172136 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
36172074 CTGGTCTGAT
*
36172084 CTTATACTAGGAATGAACTTC-GTATG
1 CTTAGACTAGGAATGAA-TTCTGTATG
*
36172110 CTTAGACTAGGGATGAATTCTGTATG
1 CTTAGACTAGGAATGAATTCTGTATG
36172136 C
1 C
36172137 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (26 bp):
CTTAGACTAGGAATGAATTCTGTATG
Found at i:36172730 original size:11 final size:11
Alignment explanation
Indices: 36172698--36172723 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
36172688 CGGTTAAGCT
36172698 CTCCGACGATG
1 CTCCGACGATG
36172709 CTCCGACGATG
1 CTCCGACGATG
36172720 CTCC
1 CTCC
36172724 AGCGATGGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.42, G:0.23, T:0.19
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:36172803 original size:26 final size:26
Alignment explanation
Indices: 36172767--36172819 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
36172757 GGCTCAAAAT
36172767 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
36172793 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
36172819 C
1 C
36172820 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:36173207 original size:159 final size:158
Alignment explanation
Indices: 36172792--36173208 Score: 442
Period size: 159 Copynumber: 2.6 Consensus size: 158
36172782 AACTCCATAT
36172792 GCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
* * * * * * *
36172857 CCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGACCGGCTCGATCTCCCCTGCGTGCTATCGATCC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGCATGCTACCGATCC
* * * *
36172922 TGCTACCTCAACCCTCGATCCGATCTGA
131 CGCTACCACAACCCTCGATCAGAGCTGA
* ** * * * * * *
36172950 TCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACCAAATGAGTGTACAGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
* * * * * *
36173015 CCGGCCGAAGAGGCATAATGCGTAAGACGGGGATCGGCTTGGTCCCCCTCTGCATGCTACCGGTC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCC-CTGCATGCTACCGATC
* * *
36173080 CCGCTGCCACAACCCTCGGTCAG-GCTGGG
130 CCGCTACCACAACCCTCGATCAGAGCT-GA
* * * * * *
36173109 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCA
* ** *
36173173 GCTGGGAGAAGAGGCAGAATGCACAAGCCGGGGATC
65 GCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATC
36173209 AGCCTTATCC
Statistics
Matches: 206, Mismatches: 50, Indels: 5
0.79 0.19 0.02
Matches are distributed among these distances:
158 96 0.47
159 109 0.53
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGCATGCTACCGATCC
CGCTACCACAACCCTCGATCAGAGCTGA
Found at i:36173291 original size:26 final size:26
Alignment explanation
Indices: 36173255--36173307 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36173245 CCAGTCTGAT
*
36173255 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
36173281 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
36173307 C
1 C
36173308 CACGAAACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:36173662 original size:26 final size:26
Alignment explanation
Indices: 36173624--36173676 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36173614 CCGGTCCGAT
*
36173624 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
36173650 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
36173676 C
1 C
36173677 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:36174154 original size:26 final size:26
Alignment explanation
Indices: 36174125--36174176 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
36174115 CCGGTTCGAT
*
36174125 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATAAACTCCGTATGC
* *
36174151 TTAGACTGGGGATAAACTCTGTATGC
1 TTAGACTGGGAATAAACTCCGTATGC
36174177 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCGTATGC
Found at i:36176292 original size:316 final size:316
Alignment explanation
Indices: 36175716--36176448 Score: 945
Period size: 316 Copynumber: 2.3 Consensus size: 316
36175706 AACTCCATAT
* * * *
36175716 GCTTAGACATGGCATAAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GCGTGCGGGCGCTCAG
* * *
36175781 CCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCTGGTCCCCCCTTGCGTGCTATCGATC
65 CCGGCC-GAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGGTCCCCCCTTGCGTGCTATCGATC
* * ** * *
36175846 TTGCTGCCGTAAACCTCGATTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTA
129 CTACTGCCACAAACCTCGATTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
* * * * * *
36175911 ACCCATGAAATGAGCGTACGGGCACTCAGTCGGCCGGAGAGGCATAATGCGTAAGCCGGGGATCG
194 ACCCACGAAATGAGAGTACGGGCACTCAGCCGGCCGAAAAGGCATAATGCGTAAGCCGAGGATCG
* * *
36175976 GCCCGATCCCCTTCTTCGAGCT-GCAGGTCCCGCTGCCACAACCCTCAGTCTGACTGTG
259 GCCCGATCCCCTTCTGCGAGCTAGC-GGTCCCGCTGCCACAACCCTCAGTCCGACTGGG
* *
36176034 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-GGCGTGCGGGCGCTCAG
*
36176099 CCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGGT-CCCCC-TGCGTGCTGTCGATC
65 CCGGCC-GAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGGTCCCCCCTTGCGTGCTATCGATC
* *
36176162 CTACTGCCACAACCCTCGA-TCTGATTCGATCTTAGA-TAGGGAATGAACTCCGTATGCATAAGT
129 CTACTGCCACAAACCTCGATTC-GATCCGATCTTAGACT-GGGAATGAACTCCGTATGCATAAGT
* * * * *
36176225 CAACCTACGAAATGAGAGTGCGGGCACTGAGCCGGTCGAAAAGGCATAATGCGTAAGTCGAGGAT
192 CAACCCACGAAATGAGAGTACGGGCACTCAGCCGGCCGAAAAGGCATAATGCGTAAGCCGAGGAT
* * * * * * **
36176290 CGGCTCGGTCCCTTTCTGCGTGCTATCGGTCCCGCTGCCACAACCCTCGGTCCGGTTGGG
257 CGGCCCGATCCCCTTCTGCGAGCTAGCGGTCCCGCTGCCACAACCCTCAGTCCGACTGGG
* * * * *
36176350 GCTTAGACATGGAATGAACTCCCTATGGCTAAGCGAACCCATGAAACGGGCATGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-GGCGTGCGGGCGCTCAG
36176415 CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGAT
65 CCGGCCG-AGAGGCAGAATGCGCAAGCCAGGGAT
36176449 TGGCCCGATC
Statistics
Matches: 361, Mismatches: 49, Indels: 12
0.86 0.12 0.03
Matches are distributed among these distances:
315 4 0.01
316 254 0.70
317 6 0.02
318 96 0.27
319 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGCGTGCGGGCGCTCAGC
CGGCCGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGGTCCCCCCTTGCGTGCTATCGATCCT
ACTGCCACAAACCTCGATTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAAC
CCACGAAATGAGAGTACGGGCACTCAGCCGGCCGAAAAGGCATAATGCGTAAGCCGAGGATCGGC
CCGATCCCCTTCTGCGAGCTAGCGGTCCCGCTGCCACAACCCTCAGTCCGACTGGG
Found at i:36176461 original size:159 final size:158
Alignment explanation
Indices: 36175716--36176471 Score: 675
Period size: 159 Copynumber: 4.8 Consensus size: 158
36175706 AACTCCATAT
* * *
36175716 GCTTAGACATGGCATAAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *
36175781 CCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCTGGTCCCCCCTTGCGTGCTATCGATC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCTCC-TGCGTGCTATCGATC
** ** * * *
36175846 TTGCTGCCGTAAACCTCGATTCGATCCGA
130 CCGCTGCCACAACCCTCGATCCGATTCGA
* * ** * * *
36175875 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAATGAGCGTACGGGCACTCA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * * * * * * *
36175939 GTCGGCCGGAGAGGCATAATGCGTAAGCCGGGGATCGGCCCGATCCCCTTCTTCGAGCT-GCAGG
65 GCCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGT-CCCTCCTGCGTGCTATC-GA
*
36176003 TCCCGCTGCCACAACCCTC-AGTCTGACTGT-G-
128 TCCCGCTGCCACAACCCTCGA-TCCGA-T-TCGA
* *
36176034 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCACTCA
* * * *
36176098 ACCGGCC-AGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGGTCCC-CCTGCGTGCTGTCGAT
65 GCCGGCCGA-AGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCTCCTGCGTGCTATCGAT
** *
36176161 CCTACTGCCACAACCCTCGATCTGATTCGA
129 CCCGCTGCCACAACCCTCGATCCGATTCGA
* * * * * * * * * *
36176191 TCTTAGATAGGGAATGAACTCCGTATGCATAAGTCAACCTACGAAATGAGAGTGCGGGCACTGAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * * *
36176256 CCGGTCGAAAAGGCATAATGCGTAAGTC-GAGGATCGGCTCGGTCCCTTTCTGCGTGCTATCGGT
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCAG-GGATCGGCCCGGTCCC-TCCTGCGTGCTATCGAT
* * * *
36176320 CCCGCTGCCACAACCCTCGGTCCGGTTGGG
129 CCCGCTGCCACAACCCTCGATCCGATTCGA
* * * * * * *
36176350 GCTTAGACATGGAATGAACTCCCTATGGCTAAGCGAACCCATGAAACGGGCATGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * *
36176415 CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGATCCCTCCTGTGTGCT
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCTCCTGCGTGCT
36176472 GCCGTAATCC
Statistics
Matches: 466, Mismatches: 112, Indels: 39
0.76 0.18 0.06
Matches are distributed among these distances:
155 1 0.00
156 3 0.01
157 114 0.24
158 20 0.04
159 320 0.69
160 8 0.02
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCTCCTGCGTGCTATCGATCC
CGCTGCCACAACCCTCGATCCGATTCGA
Found at i:36176526 original size:26 final size:26
Alignment explanation
Indices: 36176497--36176549 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
36176487 CCGGTCCGAT
* * *
36176497 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
*
36176523 CTTAAACTGGGGATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
36176549 C
1 C
36176550 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:36177438 original size:157 final size:158
Alignment explanation
Indices: 36177107--36177467 Score: 469
Period size: 157 Copynumber: 2.3 Consensus size: 158
36177097 GCGTGCAAGG
* * * *
36177107 TCGTGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAAACCGAGGGTTGT
1 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGCCAAACCGAGGGTTGC
* * *
36177172 GGCAGCAGGACCGACAGCACGTAGAGGGGGACCAGGTCGATCCCTGGCTTGCGCATTATGCCTCT
66 GGCAGCAGGACCGACAGCACG-ACAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCT
* *
36177237 CCGATCGGCTCAGCACCCGCATGCTCGTT
130 CCGATCGGCTCAGCACCAGCACGCTCGTT
* * * *
36177266 TCGTGGGTTGACTTAGGCATACAGAGTTCATATCCA-GTCTAAG-ATTAGACCAGACCGAGGGTT
1 TCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCACTAG-CCAAACCGAGGGTT
** * * * *
36177329 GCGGCAGCAGGATGGACAGCAC-ACAGGGGGATCGGGCCGATCCCCGGCTTGCTCATTCTGCCTC
64 GCGGCAGCAGGACCGACAGCACGACAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTC
* *
36177393 TCC-AGTCGGCTGAGCGCCAGCACGCTCGTT
129 TCCGA-TCGGCTCAGCACCAGCACGCTCGTT
36177423 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
36177468 AATAGAGTTC
Statistics
Matches: 174, Mismatches: 23, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
156 5 0.03
157 95 0.55
158 4 0.02
159 66 0.38
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGCCAAACCGAGGGTTGC
GGCAGCAGGACCGACAGCACGACAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTC
CGATCGGCTCAGCACCAGCACGCTCGTT
Found at i:36177558 original size:20 final size:20
Alignment explanation
Indices: 36177533--36177580 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
36177523 ACCAATAGCA
36177533 GGATCGGCAGCACATAGGGG
1 GGATCGGCAGCACATAGGGG
36177553 GGATCGGCAGCACATAGGGG
1 GGATCGGCAGCACATAGGGG
36177573 GGATCGGC
1 GGATCGGC
36177581 CTGATCCCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.23, C:0.21, G:0.46, T:0.10
Consensus pattern (20 bp):
GGATCGGCAGCACATAGGGG
Found at i:36178344 original size:158 final size:156
Alignment explanation
Indices: 36177861--36178366 Score: 484
Period size: 158 Copynumber: 3.2 Consensus size: 156
36177851 CATCTCCAGT
* * *
36177861 CTTA-GCATACGGAGTTCATTCC-CAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGA
1 CTTAGGCATACGGAGTTCATTCCAC-GTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGA
* * * *
36177924 TCGGTAGCACGTAGGGGGGACTGGGCCGATCCTCGGCTTACGCATTTTACCTCTCCGATCGGTTG
65 TCGATAGCACGTAGGAGGGAC--GGCCGATCCTCGGCTTACGCATTATACCTCTCCGATCGGCTG
* * *
36177989 AGCACCCGCACCCCCGTTTCGTGGGTTGG
128 AGCGCCCGCACGCTCGTTTCGTGGGTTGG
** * * *
36178018 CTTAGGCATA-GAGAGTTCATTCCACGTCTAAGCCCCA-ATCAAACTGAGGGTTGTGGCAGCGGG
1 CTTAGGCATACG-GAGTTCATTCCACGTCTAAG-ATCAGATCAGACCGAGGGTTGTGGCAGCAGG
* * * * * *
36178081 ACCGATAGCACGTAGAGAGGGACCGGGCTGATCCTCGACTTGCGCATTATGCCTCTTCGATCGGC
64 ATCGATAGCACGTAG-GAGGGA-C-GGCCGATCCTCGGCTTACGCATTATACCTCTCCGATCGGC
* * * * *
36178146 TCAGCGCCTGCACGCTTGTTTCGTGGATTGA
126 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGG
* * * *
36178177 CCTATGCATACGGAGTTCATTCCTA-GTCTAAGATCAGATCAGACCGAGGGTTGTGGCAACAAGA
1 CTTAGGCATACGGAGTTCATTCC-ACGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGA
* * * * * * ** *
36178241 TCAACAACACATAGGAGGGATCGAGTCGATCC-CTGGCTTACGCATTCTACCTCTCCGGCCAGCT
65 TCGATAGCACGTAGGAGGGA-CG-GCCGATCCTC-GGCTTACGCATTATACCTCTCCGATCGGCT
* *
36178305 GAGCGCCCGCACGCTCGTCTCATGGGTTGG
127 GAGCGCCCGCACGCTCGTTTCGTGGGTTGG
*
36178335 CTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CTTAGGCATACGGAGTTCATTCCACGTCTAAG
36178367 CATATGGAGT
Statistics
Matches: 277, Mismatches: 60, Indels: 23
0.77 0.17 0.06
Matches are distributed among these distances:
157 8 0.03
158 144 0.52
159 122 0.44
160 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (156 bp):
CTTAGGCATACGGAGTTCATTCCACGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGAT
CGATAGCACGTAGGAGGGACGGCCGATCCTCGGCTTACGCATTATACCTCTCCGATCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGG
Found at i:36178369 original size:26 final size:26
Alignment explanation
Indices: 36178340--36178392 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36178330 GTTGGCTTAG
36178340 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
36178366 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
36178392 G
1 G
36178393 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:36179680 original size:26 final size:26
Alignment explanation
Indices: 36179644--36179696 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
36179634 GTTGACTTGG
36179644 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
36179670 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
36179696 G
1 G
36179697 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:36180839 original size:159 final size:157
Alignment explanation
Indices: 36180604--36181000 Score: 386
Period size: 159 Copynumber: 2.5 Consensus size: 157
36180594 CTGATCCTCG
* * * ** * * *
36180604 ACTTACGCATTCTACCTCTCCGGTCAGCTGAGCACCCACACG-TCTGTTTCGTAGGTTGGCTTAG
1 ACTTGCGCATTATGCCTCTCCGACCAGCTCAGCGCCCGCACGCT-TGTTTCGT-GGTTGGCTTAG
* * * ** * * *
36180668 GCATAGGGAGTTCATTCTAC-GTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGATCGA
64 GCATACGGAGTTCATTC-ACAGTCTAAG-ACCAGACCAAACCAAGGGTTGCGGCAGCAGGATCGA
* * *
36180731 CAGCATGAAGAGGGGGACCGAGTCGATCCCCG
127 CAGCACGAAG-GGGGGACCGAGCCGATCCCCA
* * * * *
36180763 GCTTGCGTATTATGCCTCTCCGACCAGCTCAGCGCTCGCACGCTTGTTTCGTGGTTTGACTTAAG
1 ACTTGCGCATTATGCCTCTCCGACCAGCTCAGCGCCCGCACGCTTGTTTCGTGG-TTGGCTTAGG
* * * *
36180828 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGGCAGTAGGATCGATAG
65 CATACGGAGTTCATTCACAGTCTAAGACCAGACCAAACCAAGGGTTGCGGCAGCAGGATCGACAG
* *
36180893 CACGTAGGGGGGACCGAGCCGATCCTCA
130 CACGAAGGGGGGACCGAGCCGATCCCCA
* * * ** *
36180921 ACTTGCGCATTTTGCCTCTCCGACCTGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGG
1 ACTTGCGCATTATGCCTCTCCGACCAGCTCAGCGCCCGCACGCTTGTTTCGT-GGTTGGCTTAGG
36180986 CATACGGAGTTCATT
65 CATACGGAGTTCATT
36181001 TCATGTCTTA
Statistics
Matches: 192, Mismatches: 41, Indels: 11
0.79 0.17 0.05
Matches are distributed among these distances:
158 90 0.47
159 101 0.53
160 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (157 bp):
ACTTGCGCATTATGCCTCTCCGACCAGCTCAGCGCCCGCACGCTTGTTTCGTGGTTGGCTTAGGC
ATACGGAGTTCATTCACAGTCTAAGACCAGACCAAACCAAGGGTTGCGGCAGCAGGATCGACAGC
ACGAAGGGGGGACCGAGCCGATCCCCA
Found at i:36180989 original size:158 final size:158
Alignment explanation
Indices: 36180510--36181000 Score: 484
Period size: 158 Copynumber: 3.1 Consensus size: 158
36180500 CCCAGTCTAA
* * * * * * *
36180510 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGTGTTGCGGTAGCAAGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGATA
* * * * * * * * ** *
36180575 GCATGCAGAGGGGATCGGGCTGATCCTCGACTTACGCATTCTACCTCTCCGGTCAGCTGAGCACC
66 GCATGAAGGGGGGACCGAGCCGATCCTCGACTTGCGCATTATGCCTCTCCGACCAGCTGAGCGCC
* *
36180640 CACACG-TCTGTTTCGTAGGTTGGCTTAG
131 CGCACGCTC-GTTTCGTGGGTTGGCTTAG
* * ** * *
36180668 GCATAGGGAGTTCATT-CTACGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGATCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * *
36180731 CAGCATGAAGAGGGGGACCGAGTCGATCCCCGGCTTGCGTATTATGCCTCTCCGACCAGCTCAGC
64 TAGCATGAAG-GGGGGACCGAGCCGATCCTCGACTTGCGCATTATGCCTCTCCGACCAGCTGAGC
* * * * *
36180796 GCTCGCACGCTTGTTTCGTGGTTTGACTTAA
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * *
36180827 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGGCAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGATA
* * * * *
36180892 GCACGTAGGGGGGACCGAGCCGATCCTCAACTTGCGCATTTTGCCTCTCCGACCTGCTGAGCGCC
66 GCATGAAGGGGGGACCGAGCCGATCCTCGACTTGCGCATTATGCCTCTCCGACCAGCTGAGCGCC
* *
36180957 CGCACGCTCATTTCATGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
36180985 GCATACGGAGTTCATT
1 GCATACGGAGTTCATT
36181001 TCATGTCTTA
Statistics
Matches: 261, Mismatches: 66, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
157 2 0.01
158 141 0.54
159 115 0.44
160 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGATA
GCATGAAGGGGGGACCGAGCCGATCCTCGACTTGCGCATTATGCCTCTCCGACCAGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:36181869 original size:158 final size:157
Alignment explanation
Indices: 36181387--36181880 Score: 385
Period size: 158 Copynumber: 3.1 Consensus size: 157
36181377 AAGCATACAA
* * * * *
36181387 AGTTCATTCCCGGTCTAAGATTAGACTGGATCA-AGGGTTGCGGTAGCAGGATCGAAAGCACGCA
1 AGTTCATTCCCAGTCTAAGATCAAACCGGA-CAGAGGGTTGCGGTAGCAGGATCG-AAGCACGTA
* * * * * * *
36181451 AGAGGGATCGGGCCT-AT-CCTCAGCTTGCGCATTTTGCCTCTCCGACCGGCTGAGCACCCGCAT
64 GGGGGGATCGGG-CTGATCCCTCAGCTTGTGCA-TATGCCTCTCCGATCGGCTGAGCGCCCGCAC
*
36181514 GC-CTGTTTCATGGGTTGGCTTAGGCATTGGG
127 GCTC-GTTTCATGGGTTGGCTTAGGCATTCGG
** ** * * * * ** * *
36181545 AGTTCATTCCTTGTCTAAGCCCTAGCCAGACCGAGGGTTATGGCAGCGGGATCAGAAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATCAAACCGGACAGAGGGTTGCGGTAGCAGGATC-GAAGCACGTAG
* ** * * * * *
36181610 AGGGGGACCAAG-TCGATCCC-CGGCTTGCT-CATTATGCCTCTTCGGTCGGCTCAACGCCCGCA
65 -GGGGGATCGGGCT-GATCCCTCAGCTTG-TGCA-TATGCCTCTCCGATCGGCTGAGCGCCCGCA
* ** ** * * **
36181672 CGCTCATTTTGTGGGTTAACTTATGCATACAA
126 CGCTCGTTTCATGGGTTGGCTTAGGCATTCGG
* *
36181704 AGCTCATTCCCAGTCTAAGATCAAACCGGACAGAGGGTTGCGGTAGCAGAATCGATAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATCAAACCGGACAGAGGGTTGCGGTAGCAGGATCGA-AGCACGTAG
* * *
36181769 GGGGGATCGGGCTGATCCCTC-GCTTGTGCATACTGCCTCTCCGATCGACTGAGTGCCCTCACGC
65 GGGGGATCGGGCTGATCCCTCAGCTTGTGCATA-TGCCTCTCCGATCGGCTGAGCGCCCGCACGC
36181833 TCGTTTCATGGGTTGGCTTAGGCATTCGG
129 TCGTTTCATGGGTTGGCTTAGGCATTCGG
36181862 AGTTCATT-CCATGTCTAAG
1 AGTTCATTCCCA-GTCTAAG
36181881 CATATAGAGT
Statistics
Matches: 247, Mismatches: 75, Indels: 28
0.71 0.21 0.08
Matches are distributed among these distances:
157 8 0.03
158 125 0.51
159 111 0.45
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.25
Consensus pattern (157 bp):
AGTTCATTCCCAGTCTAAGATCAAACCGGACAGAGGGTTGCGGTAGCAGGATCGAAGCACGTAGG
GGGGATCGGGCTGATCCCTCAGCTTGTGCATATGCCTCTCCGATCGGCTGAGCGCCCGCACGCTC
GTTTCATGGGTTGGCTTAGGCATTCGG
Found at i:36182251 original size:26 final size:26
Alignment explanation
Indices: 36182221--36182273 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36182211 GTTGACTTAG
36182221 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
36182247 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
36182273 G
1 G
36182274 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:36182459 original size:868 final size:861
Alignment explanation
Indices: 36180129--36182749 Score: 2803
Period size: 868 Copynumber: 3.0 Consensus size: 861
36180119 GTTGGCTTAG
* *
36180129 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GACAGTAGGACCAGT
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAG-CAGTAGGACCAGC
* * * **
36180193 AATAGGATCGGTAGCACGTAGGGGGGCACCGGGCTGATCCATGACTTGTGCATTCTGCCTCTCC-
65 AGTAGGATAGGTAGCACGTAGGGGGG-ACC-GGCCGATCCCCGACTTGT-CATTCTGCCTCTCCG
** * *
36180257 AGCTGGCTGAGTGCC-CGTACGCTTGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATG
127 A-CCAGCTGAGTGCCTC-T-CGCTCGTTTCGT-GGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * * *
36180321 TCTAAGCCCCAGCCAGACCGAGGGCTGTGGTAGCAGGACCGACAGTGGGATCGACAGCACGCAGA
188 TCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGAGAGCACGCAGA
* *
36180386 GGGGGATCGGATTTATCCCTGGCTTGCGTATTATGCCTCTCCAGTCAGCCTCTCTGATCGGTTAA
253 GGGGGATCGGGTTTATCCC-GGCTTGCGCATTATGCCTCT-C---C-G-------G-TCGGTTAA
* ** * *
36180451 GTGCTTGCACGCTCGTTTCATGGGTTGACTTAGGCATATGAAGTTCATCCCCAGTCTAAGCATAC
304 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
* * * **
36180516 AGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGTGTTGCGGTAGCAAGATCGGTAGCATGC
369 AGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCAGGATCGAAAGCATGC
* * * * * *
36180581 AGAGGGGATCGGGCTGATCCTCGACTTACGCATTCTACCTCTCCGGTCAGCTGAGCACCCACACG
434 AGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCACACG
* * * * * *
36180646 TCTGTTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCTACGTCTAAGCCCCAGTCGGACCGAG
499 CCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCGGACCGAG
* *
36180711 GGTTGTGGCAGCGGGATCGACAGCATGAAGAGGGGGACCGAGTCGATCCCCGGCTTGCGT-ATTA
564 GGTTGTGGCAGCGGGATCGACAGCACGAAGAGGGGGACCAAGTCGATCCCCGGCTTGC-TCATTA
* * * ** * *
36180775 TGCCTCTCCGACCAGCTCAGCGCTCGCACGCTTGTTTCGTGGTTTGACTTAAGCATACGGAGTTC
628 TGCCTCTTCGGCCAGCTCAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAAGCATACGGAGTTC
* * *
36180840 ATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGGCAGTAGGATCGATAGCACGTAGGGGGG
693 ATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTGCGGTAG-A-GATCGATAGCACGTAGGGGGG
* * * * *
36180905 ACCGAGCCGAT-CCTCAACTTGCGCATTTTGCCTCTCCGACCTG-CTGAGCGCCCGCACGCTCAT
756 ATCGGGCCGATCCCTC-GCTTGCGCATTTTGCCTCTCCGACC-GACTGAGCGCCCTCACGCTCGT
* *
36180968 TTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTTA
819 TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * *
36181011 GCATAAGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTACAGTAGCAAGACCAGCA
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGTAGGACCAGCA
* * * * * * *
36181076 GCAGGATGGGCAGCACGTAAGGGGAGACCGGGCCGATCCCCGTCTTGAGCATTCTGCCTCTCCGG
66 GTAGGATAGGTAGCACGT-AGGGGGGACC-GGCCGATCCCCGACTTG-TCATTCTGCCTCTCCGA
* * * * * * *
36181141 CCAACTGAGTGCTCGCACGCTCATTTTGTGAGTTAGCTTAGGCATACGGAGTTCATTTCATGTCT
128 CCAGCTGAGTGC-CTCTCGCTCGTTTCGTG-GTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* * * ** *
36181206 AAGCCCCAGTCAGACCAAAGGTTGTGGCAGCAGGATTGGCAGCGGGATCG-GTAGCACGCAGAGG
191 AAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGAG-AGCACGCAGAGG
* * * ** * * * * *
36181270 GGGATCAGGTTTATCCTCGGCTTACGCGTTATGCCTCTCTAGTGGGTTGAGCACCCGTAAGCTCG
255 GGGATCGGGTTTATCC-CGGCTTGCGCATTATGCCTCTCCGGTCGGTTAAGCGCCCGCACGCTCG
* * * * *
36181335 TTTCCTGTGTTGACTTAGGCATACGGTGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCGG
319 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAG
** * * * * *
36181400 TCTAAGATTAGA-CTGGATCAAGGGTTGCGGTAGCAGGATCGAAAGCACGCAAGAGGGATCGGGC
384 TCTAAGATCGGATC-GGACCGAGGGTTGCGGTAGCAGGATCGAAAGCATGCAGGGGGGATCGGGC
* * * ** * * *
36181464 CTATCCTCAGCTTGCGCATTTTGCCTCTCCGACCGGCTGAGCACCCGCATGCCTGTTTCATGGGT
448 CGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCACACGCCTGTTTCGTGGGT
* * * * *
36181529 TGGCTTAGGCATTGGGAGTTCATTCCTTGTCTAAGCCCTAGCCAGACCGAGGGTTATGGCAGCGG
513 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCGGACCGAGGGTTGTGGCAGCGG
* * *
36181594 GATCAGA-AGCACGTAGAGGGGGACCAAGTCGATCCCCGGCTTGCTCATTATGCCTCTTCGGTCG
578 GATC-GACAGCACGAAGAGGGGGACCAAGTCGATCCCCGGCTTGCTCATTATGCCTCTTCGGCCA
* * * ** *
36181658 GCTCAACGCCCGCACGCTCATTTTGTGGGTTAACTTATGCATACAAAGCTCATTCCCAGTCTAAG
642 GCTCAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAG
* *
36181723 ATCAAACCGGA-CAGAGGGTTGCGGTAGCAGAATCGATAGCACGTAGGGGGGATCGGGCTGATCC
707 ATCAAACCAGACCA-AGGGTTGCGGTAG-AG-ATCGATAGCACGTAGGGGGGATCGGGCCGATCC
* ** * *
36181787 CTCGCTTGTGCATACTGCCTCTCCGATCGACTGAGTGCCCTCACGCTCGTTTCATGGGTTGGCTT
769 CTCGCTTGCGCATTTTGCCTCTCCGACCGACTGAGCGCCCTCACGCTCGTTTCATGGGTTGGCTT
*
36181852 AGGCATTCGGAGTTCATTCCATGTCTAA
834 AGGCATACGGAGTTCATTCCATGTCTAA
* * * * *
36181880 GCATATA-GAGTTCATTCCCCGTCTAAGATCAGACCGGACCAAGGTTTGCAGCAATAGGACCAGC
1 GCATA-AGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGTAGGACCAGC
* ** * *
36181944 AGTAGGATAGGTAGCACATAGGGGGGACCAGATCGGTCCCCAACTTGCTCATTCTGCCTCTCCGA
65 AGTAGGATAGGTAGCACGTAGGGGGGACC-GGCCGATCCCCGACTTG-TCATTCTGCCTCTCCGA
*
36182009 CCAGCTGAGTGCCTACTCGCTCGTTGCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
128 CCAGCTGAGTGCCT-CTCGCTCGTTTCGT-GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* * * * * * *
36182074 AAACCCCAACCGGATCGAGGGTTGTGGCAGTAGGACCGATAGCGGGATCGAGAGCATGCAGAGGG
191 AAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGAGAGCACGCAGAGGG
* * * * * *
36182139 AGATCGGGCTGATCCCAGGCTTGCACATTATGCCTCTCCGGTCGGCTAAGCGCCCGCACGCTTGT
256 GGATCGGGTTTATCCC-GGCTTGCGCATTATGCCTCTCCGGTCGGTTAAGCGCCCGCACGCTCGT
* *
36182204 TTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGT
320 TTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGT
* * * * * *
36182269 CTAAGATCGGATCAGACCGAGGGTTGTC-GCAGCAGGATCGACATCATGCAGGGGGGACCAGGCC
385 CTAAGATCGGATCGGACCGAGGGTTG-CGGTAGCAGGATCGAAAGCATGCAGGGGGGATCGGGCC
* * * * * *
36182333 GATCC-CTGGCTTGCGCATTCTGCCTCTCCGGTTGGTTGTA-CGCCCATACACCCGTTTCGTGGG
449 GATCCTC-GGCTTGCGCATTCTGCCTCTCCGGTCGGCTG-AGCACCCACACGCCTGTTTCGTGGG
* * * * *
36182396 TTAGCTTAGGCATAAGGAGTTCATTCCATGTCCAAGCCCAAGCCGGACTGATGGTTGTGGCAGCG
512 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCGGACCGAGGGTTGTGGCAGCG
* * * ** * * *
36182461 GGACCGACAGCACGCAA-AAGGGGACCAAGTTGATCATCGACTT-TTGCAATATGCCTCTTCGGC
577 GGATCGACAGCACG-AAGAGGGGGACCAAGTCGATCCCCGGCTTGCT-CATTATGCCTCTTCGGC
* * * *
36182524 CAGCTCAGTGCCTGTACACTCATTTTGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTA
640 CAGCTCAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTA
** * * *
36182589 AGATTGGAA-TAGACCAAGGGTTGTAGCGGTAG-GATTGGTAGCACGTAGGGGGGATCGGGCCGA
705 AGA-TCAAACCAGACCAAGGG-T-T-GCGGTAGAGATCGATAGCACGTAGGGGGGATCGGGCCGA
* * * * * * **
36182652 TCCCTGGCTTGCGCGTTTTGCCTCTCCGGCCGACTGAGCACCCTCTCGCTTGTTTTGTGGGTTGG
766 TCCCTCGCTTGCGCATTTTGCCTCTCCGACCGACTGAGCGCCCTCACGCTCGTTTCATGGGTTGG
36182717 CTTAGGCATACGGAGTTCATTCCATGTCTAA
831 CTTAGGCATACGGAGTTCATTCCATGTCTAA
36182748 GC
1 GC
36182750 CCCAATCGGA
Statistics
Matches: 1426, Mismatches: 280, Indels: 80
0.80 0.16 0.04
Matches are distributed among these distances:
867 6 0.00
868 616 0.43
869 542 0.38
870 9 0.01
871 7 0.00
881 2 0.00
882 234 0.16
883 9 0.01
884 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (861 bp):
GCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGTAGGACCAGCA
GTAGGATAGGTAGCACGTAGGGGGGACCGGCCGATCCCCGACTTGTCATTCTGCCTCTCCGACCA
GCTGAGTGCCTCTCGCTCGTTTCGTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
CCAGCCAGACCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGAGAGCACGCAGAGGGGGATC
GGGTTTATCCCGGCTTGCGCATTATGCCTCTCCGGTCGGTTAAGCGCCCGCACGCTCGTTTCATG
GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
TCGGATCGGACCGAGGGTTGCGGTAGCAGGATCGAAAGCATGCAGGGGGGATCGGGCCGATCCTC
GGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCACACGCCTGTTTCGTGGGTTGGCTTAG
GCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCGGACCGAGGGTTGTGGCAGCGGGATCGACA
GCACGAAGAGGGGGACCAAGTCGATCCCCGGCTTGCTCATTATGCCTCTTCGGCCAGCTCAGCGC
CCGCACGCTCATTTTGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCA
GACCAAGGGTTGCGGTAGAGATCGATAGCACGTAGGGGGGATCGGGCCGATCCCTCGCTTGCGCA
TTTTGCCTCTCCGACCGACTGAGCGCCCTCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAA
Found at i:36182943 original size:26 final size:26
Alignment explanation
Indices: 36182893--36182945 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
36182883 GTTGACTTAG
* *
36182893 GCATACGGAGTTCATCTCCAGTCTAA
1 GCATACAGAGTTCATCTCCAATCTAA
36182919 GCATACAGAGTTCAT-TCCCAATCTAA
1 GCATACAGAGTTCATCT-CCAATCTAA
36182945 G
1 G
36182946 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCTCCAATCTAA
Found at i:36183399 original size:25 final size:26
Alignment explanation
Indices: 36183371--36183420 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
36183361 TTGACTTAGG
36183371 CATACGGAGTTCA-TCCCAGTCTAAT
1 CATACGGAGTTCATTCCCAGTCTAAT
* *
36183396 CATATGGAGTTCATTCCTAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
36183421 GATCGGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAT
Found at i:36183722 original size:125 final size:125
Alignment explanation
Indices: 36183520--36183744 Score: 310
Period size: 125 Copynumber: 1.8 Consensus size: 125
36183510 ACCGGTTGAG
* * *
36183520 CACCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
1 CACCCGCACACCCGTTTCGTGGGTTGACTTAGACATAGGGAGTTCATTCCATGTCTAAGCACCAG
* *
36183585 TCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACATTATGCCTCTTTGGTCGGCTCAA
66 TCGGACCGAGGGTTGTGACAGCAAGACCGACAGCACATTATGCCTCTTTGGTCGGCTCAA
* * * * *
36183645 CACCCGCACACTCGTTTCGTGGGTTTACTTATACATATGGAGTTCATTCCCA-GTCTAAG-ATCA
1 CACCCGCACACCCGTTTCGTGGGTTGACTTAGACATAGGGAGTTCATT-CCATGTCTAAGCACCA
* *
36183708 GATCGGACTGAGGGTTGTGACAGCAAGATCGACAGCA
65 G-TCGGACCGAGGGTTGTGACAGCAAGACCGACAGCA
36183745 TGTAGGGGGG
Statistics
Matches: 86, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
124 3 0.03
125 80 0.93
126 3 0.03
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (125 bp):
CACCCGCACACCCGTTTCGTGGGTTGACTTAGACATAGGGAGTTCATTCCATGTCTAAGCACCAG
TCGGACCGAGGGTTGTGACAGCAAGACCGACAGCACATTATGCCTCTTTGGTCGGCTCAA
Found at i:36183865 original size:26 final size:26
Alignment explanation
Indices: 36183836--36183886 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
36183826 TTGGCTTAGG
*
36183836 CATACGGAGTTCATT-CCATGTCTAAT
1 CATACGGAGTTAATTCCCA-GTCTAAT
36183862 CATACGGAGTTAATTCCCAGTCTAA
1 CATACGGAGTTAATTCCCAGTCTAA
36183887 GATTTTGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTAATTCCCAGTCTAAT
Found at i:36184592 original size:26 final size:26
Alignment explanation
Indices: 36184556--36184608 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36184546 GTTGACTTAG
36184556 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
36184582 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
36184608 G
1 G
36184609 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:36184883 original size:159 final size:158
Alignment explanation
Indices: 36184621--36185124 Score: 503
Period size: 158 Copynumber: 3.2 Consensus size: 158
36184611 TGGACTGGAC
** ** * * * * *
36184621 CGAGGGTTACGGCAGCAGGATCGACAGCACGTAAGGGGGATCGGGTCGAT-CCCTGACTTGCGCA
1 CGAGGGTTGTGGCAGCAGGATCGACAGCACACAGGGGGGACCGGGCCAATCCCCAG-CTTGCGCA
* * * * * *
36184685 TTCTGCCTCTTCGATCGGCTGAGCGCCCGCAGGCCCGTTTTGTGGGTTGGCTTAGACATAGGGAG
65 TTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
36184750 TTCATTCCATGTCTAAGCCCCAGTCGGAT
130 TTCATTCCATGTCTAAGCCCCAGTCGGAT
* * * *
36184779 CGAGGGTTGTGGCAGCGGGATCGGCAGCACACAGAGGGGGACCGGGCCAATCCTCGGCTTGCGCA
1 CGAGGGTTGTGGCAGCAGGATCGACAGCACACAG-GGGGGACCGGGCCAATCCCCAGCTTGCGCA
* * * * * * **
36184844 TTATGCCTCTTCGACCGGCTAAACACCCGCACGCTCGTTTCGTGGATTGGCTTAGGCGTACATAG
65 TTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
** * *
36184909 TTCATTCCCA-GTCTAA-CATCAGATCAGAC
130 TTCATT-CCATGTCTAAGCCCCAG-TCGGAT
** * * ** * * *
36184938 CGAGGGTTACGGTAGTAGGATCGACAGCACGTAGGGGGGACTGGGCCAGTCCCCAGCTTGTGCAT
1 CGAGGGTTGTGGCAGCAGGATCGACAGCACACAGGGGGGACCGGGCCAATCCCCAGCTTGCGCAT
* *
36185003 TCTGCCTC-TCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
66 TCTGCCTCTTC-GACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
** *
36185067 TTTTTTCCATGTCTAAGCCCCAGCCGGAT
130 TTCATTCCATGTCTAAGCCCCAGTCGGAT
* * *
36185096 CGAGGGTTGTGGTAGCAAGATCGATAGCA
1 CGAGGGTTGTGGCAGCAGGATCGACAGCA
36185125 GGATCGGCAG
Statistics
Matches: 274, Mismatches: 65, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
157 5 0.02
158 145 0.53
159 118 0.43
160 6 0.02
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (158 bp):
CGAGGGTTGTGGCAGCAGGATCGACAGCACACAGGGGGGACCGGGCCAATCCCCAGCTTGCGCAT
TCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCCCCAGTCGGAT
Found at i:36185271 original size:26 final size:26
Alignment explanation
Indices: 36185241--36185293 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36185231 GTTGACTTAG
36185241 GCATACGGAGTTCATCCCCAGACTAA
1 GCATACGGAGTTCATCCCCAGACTAA
* *
36185267 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGACTAA
36185293 G
1 G
36185294 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGACTAA
Found at i:36187445 original size:26 final size:26
Alignment explanation
Indices: 36187390--36187445 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
36187380 TGGGTTGACT
* *
36187390 TAAGCATACGGAGTTCATCCCTAGTG
1 TAAGCATACAGAGTTCATCCCTAGTC
36187416 TAAGCATACAGAGTTCATTCCC-AGTC
1 TAAGCATACAGAGTTCA-TCCCTAGTC
36187442 TAAG
1 TAAG
36187446 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCTAGTC
Found at i:36187518 original size:185 final size:184
Alignment explanation
Indices: 36187170--36187576 Score: 435
Period size: 185 Copynumber: 2.2 Consensus size: 184
36187160 TCTCTGGTCA
* * * * *
36187170 GCTGAGTGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTATAAG
1 GCTGACTGCCCGCACG-TCATTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTATAAG
* ** *
36187235 CATAAGGAGTTCATTCCCAGTGTAAAATTGGACCAGACCGACGGTTGCGATAGCAGGATCGGCAG
65 CATAAGGAGTTCATTCCCAGTCTAAAATCAGACCAGACCGAAGGTTGCGATAGCAGGATCGGCAG
* ** * * * *
36187300 CACGCAGAGAGGGATCGGGCTGATCCTTGGCTTGTGCATTATGCTTCTCCGGCCG
130 CACGCAGAGAGGGACCAAGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGACCG
* * *
36187355 GCTGACTGCCTGCACGCTCATTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCTAGTGTAAG
1 GCTGACTGCCCGCACG-TCATTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTATAAG
* * * * * * *
36187420 CATACA-GAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAAGGTTGCAGGTAGTAGGATCGGT
65 CATA-AGGAGTTCATTCCCAGTCTAAAATCAGACCAGACCGAAGGTTGC-GATAGCAGGATCGGC
* * * * *
36187484 AGCACGCAG-GGGGGACCAA-ATCGATCCCTGGCTTGCGCATTCTGCCTCTCTGATCG
128 AGCACGCAGAGAGGGACCAAGCT-GATCCCTGGCTTGCGCATTATGCCTCTCCGACCG
*
36187540 GCTGAGC-GCCCGCACGTCCATTTCATGGGTTGGCTTA
1 GCTGA-CTGCCCGCACGT-CATTTCATGGGTTGACTTA
36187577 GGGATAGGGA
Statistics
Matches: 183, Mismatches: 34, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
184 2 0.01
185 158 0.86
186 23 0.13
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (184 bp):
GCTGACTGCCCGCACGTCATTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTATAAGC
ATAAGGAGTTCATTCCCAGTCTAAAATCAGACCAGACCGAAGGTTGCGATAGCAGGATCGGCAGC
ACGCAGAGAGGGACCAAGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGACCG
Found at i:36187924 original size:26 final size:26
Alignment explanation
Indices: 36187895--36187947 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36187885 GTTGGCTTAG
*
36187895 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
36187921 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
36187947 G
1 G
36187948 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:36189467 original size:26 final size:26
Alignment explanation
Indices: 36189431--36189509 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
36189421 GTTGGCTTAG
36189431 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
36189457 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
36189483 GCATACGAAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
36189509 G
1 G
36189510 ATTTTAAGCC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 48 0.94
27 3 0.06
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:36190143 original size:26 final size:26
Alignment explanation
Indices: 36190107--36190159 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36190097 GTTGGCTTAG
36190107 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
36190133 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
36190159 G
1 G
36190160 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:36190328 original size:26 final size:26
Alignment explanation
Indices: 36190292--36190344 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
36190282 ATTGGCTTAG
* *
36190292 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
36190318 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
36190344 G
1 G
36190345 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:36190524 original size:26 final size:26
Alignment explanation
Indices: 36190488--36190540 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36190478 GTTGGCTTAG
36190488 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
36190514 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
36190540 G
1 G
36190541 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:36191091 original size:26 final size:26
Alignment explanation
Indices: 36191061--36191116 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
36191051 TGGGTTGACT
36191061 TAAGCATAC-AGAGTTCATCCCCAGTC
1 TAAGCATACGA-AGTTCATCCCCAGTC
*
36191087 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
36191113 TAAG
1 TAAG
36191117 ATCGGACAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAGTC
Found at i:36191276 original size:26 final size:26
Alignment explanation
Indices: 36191247--36191299 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
36191237 GTTGACTTAG
*
36191247 GCATAC-AGAGTTTATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
*
36191273 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
36191299 G
1 G
36191300 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:36191458 original size:185 final size:183
Alignment explanation
Indices: 36191038--36191459 Score: 487
Period size: 185 Copynumber: 2.3 Consensus size: 183
36191028 CTTTGGTCGG
* *
36191038 CACGCTCATTTCATGGGTTGACTTAAGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTC
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTC
* * * ** * *
36191103 ATTCCCAGTCTAAGATCGGACAGATAGAAGGTTGCGATAGTAGGATTGACAGCATGCAGGGGGGA
66 ATTCCCAGTCTAAGATCGGACAGATAGAAGGTTACGACAGCAAAATCGACAGCACGCAGGGGGGA
* * * * *
36191168 CAGGACCAATCCCCGGCTTGCGCATCTTGCCTCTCTGATCGGCTGAGCGCCTG
131 CAGGACCAATCCCCGGCTTGCACATCTTGCCTCTCCGACCGACTGAGCGCCTA
*
36191221 CACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTTATCCCCAGTCTAAGCATACGAAGTTC
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTC
* * *
36191286 ATTCCCAGTCTAAGATCGGACCGGACCT-GAGGGTTACGACAGCAAAATCGATAGCACGCAGGGG
66 ATTCCCAGTCTAAGATCGGA-CAGA--TAGAAGGTTACGACAGCAAAATCGACAGCACGCAGGGG
* * ** *
36191350 GGACCGGGA-CGATCCTTGGCTTGCACAT-TCTGCCTCTCCGGCCGACTGAGCGCTCGTA
128 GGA-CAGGACCAATCCCCGGCTTGCACATCT-TGCCTCTCCGACCGACTGAGCGC-C-TA
* ** *
36191408 CAC-C-CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGC
36191460 CCCAGTCGGA
Statistics
Matches: 203, Mismatches: 28, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
183 82 0.40
184 7 0.03
185 103 0.51
186 7 0.03
187 4 0.02
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (183 bp):
CACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTC
ATTCCCAGTCTAAGATCGGACAGATAGAAGGTTACGACAGCAAAATCGACAGCACGCAGGGGGGA
CAGGACCAATCCCCGGCTTGCACATCTTGCCTCTCCGACCGACTGAGCGCCTA
Found at i:36191750 original size:158 final size:158
Alignment explanation
Indices: 36191273--36191775 Score: 467
Period size: 159 Copynumber: 3.2 Consensus size: 158
36191263 CCCAGTCTAA
* * * **
36191273 GCATACGAAGTTCATTCCCA-GTCTAAGATCGGACCGGACCTGAGGGTTACGACAGCAAAATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGA-CTGAGGGTTGCGACAGCAGGATCGA
* * * * *
36191337 TAGCACGCAGGGGGGACCGGGACGATCCTTGGCTTGCACATTCTGCCTCTCCGGCCGACTGAGCG
64 TAGCACGCAGGAGGGACCGGGTCGATCCCTGGCTTGCACATTATGCCTCTTCGGCCGACTGAGCG
* * *
36191402 CTCGTACACCCGTTTCATGGGTTGGCTTAG
129 CTCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * * * *
36191432 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACTGAGGGTTGCGACAGCAGGATC-GA
* * ** ** * * *
36191495 CAGCACGCAAAGAGGGACCGGGTCGATCCCCAGCTTGTGCATTATGCCTC-TCTGACCGGCTCAG
64 TAGCACGC-AGGAGGGACCGGGTCGATCCCTGGCTTGCACATTATGCCTCTTC-GGCCGACTGAG
* * * * * *
36191559 TGCCCGCACGTTCATTTCGTGGGTTGACTTAG
127 CGCTCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
36191591 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACTGAGGGTTGCAACAGTAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGATCGAT
* * * * * ** *
36191655 AGCATGCAGGCGAGATCGGGTCGATCCCTGGCTTGCACATTTTGCCTCTTCGGTTGACTGAGCGA
65 AGCACGCAGGAGGGACCGGGTCGATCCCTGGCTTGCACATTATGCCTCTTCGGCCGACTGAGCGC
*
36191720 TCGCACGCTCGTTTCATTGGTTGGCTTAG
130 TCGCACGCTCGTTTCATGGGTTGGCTTAG
*
36191749 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
36191776 CATACAGAGT
Statistics
Matches: 261, Mismatches: 73, Indels: 21
0.74 0.21 0.06
Matches are distributed among these distances:
157 4 0.02
158 113 0.43
159 138 0.53
160 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGATCGATA
GCACGCAGGAGGGACCGGGTCGATCCCTGGCTTGCACATTATGCCTCTTCGGCCGACTGAGCGCT
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:36191780 original size:26 final size:26
Alignment explanation
Indices: 36191749--36191801 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
36191739 GTTGGCTTAG
36191749 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
36191775 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
36191801 G
1 G
36191802 ATCGATCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:36192477 original size:159 final size:158
Alignment explanation
Indices: 36192151--36192616 Score: 450
Period size: 158 Copynumber: 2.9 Consensus size: 158
36192141 GATCAAATCG
* * * * * * * * *
36192151 AACCGAGGGTTGTGGTAGCAGGATCGATAGGACACAGGGGGGATCGGGCCGGTCCCCAACTTGCG
1 AACCGAGGGTTGCGGCAACAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGCG
* * * * * * * * *
36192216 CATTTTACCTTTCCGATCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAAGG
66 CATTATGCCTCTCTGATCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
* * *
36192281 AGTTCATTCCATGTCTAAGCCCTAGTCG
131 AGTTCATTCCATGTCTAAGACCTAGACC
* * * * *
36192309 AACCGAGGGTTGTGGCAACGGGATTGGCAGCACGTAGAGGGGGATCGGGTCGATCCCCAGCTTGC
1 AACCGAGGGTTGCGGCAACAGGATCGACAGCACGCAG-GGGGGATCGGGTCGATCCCCAGCTTGC
* * * *
36192374 GCATTATGCCTCTCTGACCGGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTTGGCATACG
65 GCATTATGCCTCTCTGATCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
* * *
36192439 GAGTTCACTCCCA-GTCTAAGATC-GGACC
130 GAGTTCA-TTCCATGTCTAAGACCTAGACC
* * ** * * * ** *
36192467 AGACTGAGGGTTGCGGTAGTAGGATCGACAGCATGCAGGGGGGACCAGGTCGATCCCTGGCTTGT
1 A-ACCGAGGGTTGCGGCAACAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGC
* * * * * *
36192532 ACATTCTGCCTCTCTGGTCGGTTGAGTGCCCGTACGCTCGTTTCATGGCTTGGCTTAGGCATACG
65 GCATTATGCCTCTCTGATCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
36192597 GAGTTCATTCCATGTCTAAG
130 GAGTTCATTCCATGTCTAAG
36192617 CATGCGGAGT
Statistics
Matches: 247, Mismatches: 57, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
157 4 0.02
158 122 0.49
159 117 0.47
160 4 0.02
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
AACCGAGGGTTGCGGCAACAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGCG
CATTATGCCTCTCTGATCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAAGACCTAGACC
Found at i:36192624 original size:26 final size:26
Alignment explanation
Indices: 36192590--36192642 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36192580 CTTGGCTTAG
36192590 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
36192616 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
36192642 G
1 G
36192643 ATCATATCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:36194228 original size:26 final size:26
Alignment explanation
Indices: 36194179--36194229 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
36194169 TTGACTTAGG
*
36194179 CATACAAAGTTCATCCCTAGTCTAAC
1 CATACAAAGTTCATCCCTAATCTAAC
*
36194205 CATACAGAGTTCATTCCC-AATCTAA
1 CATACAAAGTTCA-TCCCTAATCTAA
36194230 GATCGAAACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.35, C:0.29, G:0.08, T:0.27
Consensus pattern (26 bp):
CATACAAAGTTCATCCCTAATCTAAC
Found at i:36194710 original size:26 final size:26
Alignment explanation
Indices: 36194680--36194732 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36194670 GTTGGCTTAG
36194680 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
36194706 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
36194732 G
1 G
36194733 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:36196424 original size:26 final size:26
Alignment explanation
Indices: 36196389--36196441 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36196379 GTTGACTTAG
36196389 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
36196415 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
36196441 G
1 G
36196442 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:36198417 original size:21 final size:21
Alignment explanation
Indices: 36198391--36198495 Score: 156
Period size: 21 Copynumber: 5.0 Consensus size: 21
36198381 TGAGCGCCTG
*
36198391 CACAACAGCTTCCAGTTCAAA
1 CACAACAGCTTCCAATTCAAA
36198412 CACAACAGCTTCCAATTCAAA
1 CACAACAGCTTCCAATTCAAA
* *
36198433 CACAACAGCTTTCAGTTCAAA
1 CACAACAGCTTCCAATTCAAA
*
36198454 CACAACAGCTTTCAATTCAAA
1 CACAACAGCTTCCAATTCAAA
* *
36198475 CACAACAGCTTTCAACTCAAA
1 CACAACAGCTTCCAATTCAAA
36198496 AAATGTTGTC
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 79 1.00
ACGTcount: A:0.41, C:0.31, G:0.07, T:0.21
Consensus pattern (21 bp):
CACAACAGCTTCCAATTCAAA
Found at i:36198495 original size:42 final size:42
Alignment explanation
Indices: 36198391--36198488 Score: 178
Period size: 42 Copynumber: 2.3 Consensus size: 42
36198381 TGAGCGCCTG
*
36198391 CACAACAGCTTCCAGTTCAAACACAACAGCTTCCAATTCAAA
1 CACAACAGCTTTCAGTTCAAACACAACAGCTTCCAATTCAAA
*
36198433 CACAACAGCTTTCAGTTCAAACACAACAGCTTTCAATTCAAA
1 CACAACAGCTTTCAGTTCAAACACAACAGCTTCCAATTCAAA
36198475 CACAACAGCTTTCA
1 CACAACAGCTTTCA
36198489 ACTCAAAAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 54 1.00
ACGTcount: A:0.40, C:0.32, G:0.07, T:0.21
Consensus pattern (42 bp):
CACAACAGCTTTCAGTTCAAACACAACAGCTTCCAATTCAAA
Found at i:36199754 original size:26 final size:26
Alignment explanation
Indices: 36199718--36199795 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
36199708 TTGACTTAGA
36199718 CATACGGAGTTCA-TCCCCAGTCTAAG
1 CATACGGAGTTCACT-CCCAGTCTAAG
*
36199744 CATACGGAGTTCACTCCCAGTCTATG
1 CATACGGAGTTCACTCCCAGTCTAAG
*
36199770 CATACGGTGTTCACTCCCAGTCTAAG
1 CATACGGAGTTCACTCCCAGTCTAAG
36199796 ATCGGATCAA
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 47 0.98
27 1 0.02
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (26 bp):
CATACGGAGTTCACTCCCAGTCTAAG
Found at i:36200296 original size:25 final size:26
Alignment explanation
Indices: 36200245--36200296 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
36200235 GTTGGCTTAG
* *
36200245 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCAAAGTCTAA
* *
36200271 GCATATGGAG-TCATTCAAAGTGTAA
1 GCATACGGAGTTCATTCAAAGTCTAA
36200296 G
1 G
36200297 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCAAAGTCTAA
Found at i:36200995 original size:26 final size:26
Alignment explanation
Indices: 36200965--36201017 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36200955 GTTGACTTAG
*
36200965 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
36200991 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
36201017 G
1 G
36201018 ACCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:36201875 original size:26 final size:26
Alignment explanation
Indices: 36201845--36201897 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
36201835 GTTGACTTAG
* *
36201845 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
36201871 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
36201897 G
1 G
36201898 ATCGAACTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:36202381 original size:26 final size:26
Alignment explanation
Indices: 36202332--36202383 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
36202322 TTGGATTAGA
* *
36202332 CATACGGAGTTCATTCCATGTCTAAG
1 CATACAGAGTTCATTCCATATCTAAG
36202358 CATACAGAGTTCATTCCCA-ATCTAAG
1 CATACAGAGTTCATT-CCATATCTAAG
36202384 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCATATCTAAG
Found at i:36202837 original size:26 final size:26
Alignment explanation
Indices: 36202807--36202858 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36202797 GTTGGCTTAG
36202807 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
36202833 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
36202859 TATTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:36203559 original size:26 final size:26
Alignment explanation
Indices: 36203530--36203582 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36203520 GTTGACTTAG
* *
36203530 GCATATGGAGTTTATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
36203556 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
36203582 G
1 G
36203583 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:36203919 original size:158 final size:159
Alignment explanation
Indices: 36203556--36204048 Score: 381
Period size: 158 Copynumber: 3.1 Consensus size: 159
36203546 CCTAGTCTAA
* * ** * * * * *
36203556 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTTACGGTTGAGGCAACAAGATCAACA
* * * * * * * * * * *
36203621 GCACACAG-GGGGGACTGAACCGATCCCCGGCTTGCGCATTCTGCCTCTCTG-GCAGGCTGAGCA
66 ACACATAGAGGGAGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCA-GCTCAGCG
* * * * **
36203684 CCCGTACGCTCATTTTGTGGGTTGGTTTAG
130 CCCGCATGCTCGTTTCGTGGGTTGACTTAG
* * * * * * * **
36203714 GCATAGGGAGTTTATT-CCATGTCTAA-ACCCCAG-CCGGA-TCGAGGGTTGTGGCAACGGGATC
1 GCATACGGAGTTCATTCCCA-GTCTAAGA--TCAGACCAGACT-TACGGTTGAGGCAACAAGATC
** * * * ** *
36203775 GGCAGCACGTAGAGGGGGACC-AGGCCGATCCTTAGCTTGTGCATTATGCCTCTCCGACCAGCTC
62 AACAACACATAGAGGGAGACCGA-GCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCAGCTC
*
36203839 AGCGTCCGCATGCTCGTTTCGTGGGTTGAC-TAG
126 AGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAG
* *
36203872 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTTACGGTTGAGGCAGCAAGATCAATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTTACGGTTGAGGCAACAAGATCAACA
* * * * * *
36203937 ACTCATAGAGGGAGACCGAGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCGATCGGCTCAGCGC
66 ACACATAGAGGGAGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCAGCTCAGCGC
* *
36204002 CCGTATGCTCGTTTCGTGGGTTGGCTTAG
131 CCGCATGCTCGTTTCGTGGGTTGACTTAG
*
36204031 GCATATGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
36204049 ATGTATAAGC
Statistics
Matches: 262, Mismatches: 60, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
157 6 0.02
158 168 0.64
159 86 0.33
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTTACGGTTGAGGCAACAAGATCAACA
ACACATAGAGGGAGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCAGCTCAGCGC
CCGCATGCTCGTTTCGTGGGTTGACTTAG
Found at i:36204438 original size:26 final size:26
Alignment explanation
Indices: 36204408--36204460 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36204398 GTTGACTTAG
* *
36204408 GCATACTGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
36204434 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
36204460 G
1 G
36204461 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:36205651 original size:160 final size:159
Alignment explanation
Indices: 36205337--36206000 Score: 603
Period size: 159 Copynumber: 4.2 Consensus size: 159
36205327 ATACCCAGTC
* * * * *
36205337 TAAGCATATGGAGTTCATTCCCAGTCAAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCG
* * * ** * * *
36205402 GCAGCACGCAG-GGGGGATCGGGCCGATCTCTGGCTTGTGCAATCTGCCT-TTCTGACTGGCTGA
66 ACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCAGTC-GGCTGA
* *
36205465 GCGCCCGCACGCCCATTTCGTGGGTTGGCT
130 GCGCCCGCACGCTCGTTTCGTGGGTTGGCT
* * * * ** *
36205495 TAAGCATACGAAGTTCATTCCTAGTCTAAAGATCAGATCGGATTGAGGGTTACAACAGCAGGATC
1 TAAGCATACGGAGTTCATTCCCAGTCT-AAGATCAGACCAGACCGAGGGTTACGACAGCAGGATC
* * * *
36205560 GACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGTTTACGCATTCTGCCTCTCCGGTCGGTTGA
65 GACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCAGTCGGCTGA
* *
36205625 GCACCCGCACGCTCGTTTCATGGGTTGGCT
130 GCGCCCGCACGCTCGTTTCGTGGGTTGGCT
* ** * **
36205655 TAGGCATACGGAGTTCATT-CCATGTCTAAGCCCA-AGCCAGACCGAGGGTTATGACAGTGGGAT
1 TAAGCATACGGAGTTCATTCCCA-GTCTAAGATCAGA-CCAGACCGAGGGTTACGACAGCAGGAT
* * * * * * *
36205718 CGACAGCACACA-ATGGGGGACCGGGCCAATCCTCGACTTACGCATTATGCCTCTTCAATCGGCT
64 CGACAGCACGCAGA-GGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCAGTCGGCT
* * * *
36205782 CAGTGCCCGCACGCTCGATTCGTGGGTTGACT
128 GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
* * * *
36205814 TAGGCATACGGAGTTCATTCCCAGTCTAACATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCG
* * ** * * * * *
36205879 ATAGCACGCATTA--GGGACTTAGTCAG-TCCCCGGCTTGA-GCA-TCTGTCTTTTCGGTCGGCT
66 ACAGCACGCA-GAGGGGGA-TCGGGCCGATCCCCGGCTT-ACGCATTCTGCCTCTTCAGTCGGCT
* * *
36205939 GAGTGCCTGCACGCTCATTTCGTGGGTTGGCT
128 GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
* *
36205971 TAGGCATACAGAGTTCATT-CCATGTCTAAG
1 TAAGCATACGGAGTTCATTCCCA-GTCTAAG
36206001 CATATGGAGT
Statistics
Matches: 408, Mismatches: 85, Indels: 27
0.78 0.16 0.05
Matches are distributed among these distances:
156 3 0.01
157 65 0.16
158 40 0.10
159 207 0.51
160 88 0.22
161 5 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCG
ACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCAGTCGGCTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGGCT
Done.