Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 401 of 402
Found at i:36206734 original size:158 final size:159
Alignment explanation
Indices: 36206385--36207035 Score: 480
Period size: 158 Copynumber: 4.1 Consensus size: 159
36206375 TAAGCATATA
* ** * * *
36206385 GAGTTCATTCCCAGTCTAAGATCGGATCGGGTCGAGGGTTGTGGCAGCAGGATAGGCAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCAGGATCGGCAACACGTA
* * * *
36206450 G-GGGGGACCAAGCCAATCCCTGGCCT-ACGCATTCTGCCTC-TCTGGTCGGCTGAGTGCCCGCA
66 GAGGGGGACCAGGCCGATCCCTGGCTTGA-GCATTCTGCCTCTTC-GGTCGGCTGAGTGCCCACA
* * * * *
36206512 TGCCCGTTTCGTGGGTTGGCTTAGGTATAGG
129 CGCTCGTTTCGTGGGTTGACTTAGGCATACG
* ** * *
36206543 GAGTTCATT-CCATGTCTAAG-CCCCAGCCGGACCAAGGGTTGTGGCAG-AGGGACCGGTAACAC
1 GAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCAAGGGTTGTGGCAGCA-GGATCGGCAACAC
* * * * *
36206605 GTAGAGGGGGACCGGGCCGAT-CCTGGCTTGAGCATTATGCCTCTTCAGTTGGCTCAGTGCCCAC
63 GTAGAGGGGGACCAGGCCGATCCCTGGCTTGAGCATTCTGCCTCTTCGGTCGGCTGAGTGCCCAC
*
36206669 ACGCTCGTTTCGTGGGTTGACTTATGCATACG
128 ACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * * *
36206701 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGAGTTGCGGCAGTAGGATCGACAAGAC--A
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCAGGATCGGCAACACGTA
* ** * * * * * **
36206764 CAGGAGGGACCAGATCGATCCCCGG-TTGTGCAATCTGCCTCTCCGGTCGGTTGAGCACCCACAC
66 GAGG-GGGACCAGGCCGATCCCTGGCTTGAGCATTCTGCCTCTTCGGTCGGCTGAGTGCCCACAC
* *
36206828 GCTAGTTTCATGGGTTGACTTAGGCATACG
130 GCTCGTTTCGTGGGTTGACTTAGGCATACG
** ** * * *** ** * ** * * *
36206858 GAGTTCATTCCCAGTCTAAGATCAAACTAGATCGAGGGTTACAGTTGCAGGATTGATAGCATGCA
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCAGGATCGGCAACACGTA
* * * * ** * * * * * *
36206923 G-GAGGGACTAGGTCGGTCCCCAGCTTAAACATTCTGCCTCTTTGGTCGGTTGAGCGCCCGCACG
66 GAGGGGGACCAGGCCGATCCCTGGCTTGAGCATTCTGCCTCTTCGGTCGGCTGAGTGCCCACACG
* *
36206987 CTCGTTTCGTGGGTTGACTTAGGTATACA
131 CTCGTTTCGTGGGTTGACTTAGGCATACG
36207016 GAGTTCATT-CCATGTCTAAG
1 GAGTTCATTCCCA-GTCTAAG
36207036 CATACAAAGT
Statistics
Matches: 390, Mismatches: 88, Indels: 30
0.77 0.17 0.06
Matches are distributed among these distances:
156 4 0.01
157 138 0.35
158 225 0.58
159 23 0.06
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (159 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCAGGATCGGCAACACGTA
GAGGGGGACCAGGCCGATCCCTGGCTTGAGCATTCTGCCTCTTCGGTCGGCTGAGTGCCCACACG
CTCGTTTCGTGGGTTGACTTAGGCATACG
Found at i:36206910 original size:157 final size:157
Alignment explanation
Indices: 36206664--36207035 Score: 417
Period size: 157 Copynumber: 2.4 Consensus size: 157
36206654 TGGCTCAGTG
* **
36206664 CCCACACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
1 CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACC
* * * * *
36206729 AGACCAAGAGTTGCGGCAGTAGGATCGACAAGACA-CAGGAGGGACCAGATCGATCCCC-GGTTG
66 AGACCAAGAGTTACAGCAGCAGGATCGA-AAG-CAGCAGGAGGGACCAGATCGATCCCCAGCTTA
**
36206792 TGCAATCTGCCTCTCCGGTCGGTTGAGCA
129 AACAATCTGCCTCTCCGGTCGGTTGAGCA
* * *
36206821 CCCACACGCTAGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACT
1 CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACC
* * * ** * * * * *
36206886 AGATCGAGGGTTACAGTTGCAGGATTGATAGCATGCAGGAGGGACTAGGTCGGTCCCCAGCTTAA
66 AGACCAAGAGTTACAGCAGCAGGATCGAAAGCA-GCAGGAGGGACCAGATCGATCCCCAGCTTAA
* ** *
36206951 ACATTCTGCCTCTTTGGTCGGTTGAGCG
130 ACAATCTGCCTCTCCGGTCGGTTGAGCA
* * *
36206979 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGTATACAGAGTTCATT-CCATGTCTAAG
1 CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
36207036 CATACAAAGT
Statistics
Matches: 179, Mismatches: 32, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
155 2 0.01
156 2 0.01
157 101 0.56
158 74 0.41
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (157 bp):
CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACC
AGACCAAGAGTTACAGCAGCAGGATCGAAAGCAGCAGGAGGGACCAGATCGATCCCCAGCTTAAA
CAATCTGCCTCTCCGGTCGGTTGAGCA
Found at i:36207047 original size:26 final size:26
Alignment explanation
Indices: 36207011--36207061 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
36207001 TGACTTAGGT
*
36207011 ATACAGAGTTCATT-CCATGTCTAAGC
1 ATACAAAGTTCATTCCCA-GTCTAAGC
36207037 ATACAAAGTTCATTCCCAGTCTAAG
1 ATACAAAGTTCATTCCCAGTCTAAG
36207062 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (26 bp):
ATACAAAGTTCATTCCCAGTCTAAGC
Found at i:36207419 original size:26 final size:26
Alignment explanation
Indices: 36207389--36207441 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
36207379 GTTGAATTAG
* *
36207389 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
36207415 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
36207441 G
1 G
36207442 ATCAAATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:36207927 original size:26 final size:26
Alignment explanation
Indices: 36207891--36207941 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
36207881 TTGGCTTAGG
36207891 CATACAGAGTTCATT-CCATGTCTAAC
1 CATACAGAGTTCATTCCCA-GTCTAAC
36207917 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
36207942 GATCAGATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAC
Found at i:36208493 original size:26 final size:26
Alignment explanation
Indices: 36208443--36208495 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
36208433 GTTAGCTTAG
*
36208443 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
36208469 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
36208495 G
1 G
36208496 AGTTTAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:36209496 original size:159 final size:158
Alignment explanation
Indices: 36209266--36209863 Score: 595
Period size: 159 Copynumber: 3.8 Consensus size: 158
36209256 CAGGATTGAT
* * *
36209266 AGCACGTA-AGGGGGATCGAGTCGATCCCCGGCTTGCGTATTCTGCGTCTCCGACCGGCTGAGCA
1 AGCACGTAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCA
* * *
36209330 CCTGCACGC-CTGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGC
66 CCCGCACGCTC-GTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGC
* * *
36209394 TAGACCGATGGTTGTGGTAGCCATACTGAT
129 TAGACCGAGGGTTGTGGTAGCGATACTGAC
* ** ** * *
36209424 AGCACGTAGATGGGGA-CTGGGTCGATCTTCGGCTTGCGCATTCTGCCTCTTTGGCCAGCTGAGC
1 AGCACGTAGAGGGGGATC-GGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* * * * *
36209488 ACCCGCACGCTTGTTTCATGGGTTGGCTTAGGTATACAGAGTTCAATCCATGTCTAAGCCCCAG-
65 ACCCGCACGCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCAGC
** * *
36209552 TCAGACCGAGGGTTGTGGTAGCGGGACCGGC
129 T-AGACCGAGGGTTGTGGTAGCGATACTGAC
*** * * * * **
36209583 AGCACGTAGAGGGGGATCGGGTCGATCGTTGGCTTGCGCATTATGCCTCTCCGGCCGACTCAGGG
1 AGCACGTAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCA
** * * **
36209648 CCTACACGCTCATTTCATGGGTTGAG-TTAGGCATACGAAGTTCATTCCCA-GTCTAAGATCAGA
66 CCCGCACGCTCGTTTCATGGGTT-AGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAG-
* * *
36209711 CCAGATCGAGGGTTACGGTAGTAG-GAT-C-GAC
128 CTAGACCGAGGGTT---GTGGTAGCGATACTGAC
* * *
36209742 AGCACGTAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTTTGCCTCTCCGACCGGCTGAGCG
1 AGCACGTAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCA
* *
36209806 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 CCCGCACGCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
36209864 ATATGGAGTT
Statistics
Matches: 356, Mismatches: 69, Indels: 30
0.78 0.15 0.07
Matches are distributed among these distances:
157 4 0.01
158 104 0.29
159 232 0.65
160 9 0.03
161 1 0.00
162 6 0.02
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
AGCACGTAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCA
CCCGCACGCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGCTA
GACCGAGGGTTGTGGTAGCGATACTGAC
Found at i:36209872 original size:26 final size:26
Alignment explanation
Indices: 36209836--36209888 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36209826 GTTGGCTTAG
36209836 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
36209862 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
36209888 G
1 G
36209889 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:36210013 original size:184 final size:184
Alignment explanation
Indices: 36209686--36210047 Score: 544
Period size: 184 Copynumber: 2.0 Consensus size: 184
36209676 AGGCATACGA
* * *
36209686 AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGTAGTAGGATCGACAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAG
* * * *
36209751 GGGGGACCGGGTCGATCCCCGGCTTGCGCATTTTGCCTCTCCGACCGGCTGAGCGCCCGCACGCT
66 GGGGGACCAGGCCGATCCCCAGCTTGCGCATTTTGCCTCTCCGACCGGCTGAGCGCCCGCACGCC
* *
36209816 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGG
131 CGTTTCATGGGTTGGCTTAGGCATACGGACTTCATTCCATGTCTAAGCATATGG
** * *
36209870 AGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGGTAGCAGGATCGATAGCATGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAG
* ** * * *
36209935 GGGGGATCAGGCCGATCCCCAGCTTGCGCATTTTGCCTCTTTGGCCGGTTGAGCGCCCGTACGCC
66 GGGGGACCAGGCCGATCCCCAGCTTGCGCATTTTGCCTCTCCGACCGGCTGAGCGCCCGCACGCC
*
36210000 CGTTTCATGGGTTGGCTTAGGCATAGGGACTTCATTCCATGTCTAAGC
131 CGTTTCATGGGTTGGCTTAGGCATACGGACTTCATTCCATGTCTAAGC
36210048 CCCAGTCGGA
Statistics
Matches: 158, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
184 158 1.00
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (184 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAG
GGGGGACCAGGCCGATCCCCAGCTTGCGCATTTTGCCTCTCCGACCGGCTGAGCGCCCGCACGCC
CGTTTCATGGGTTGGCTTAGGCATACGGACTTCATTCCATGTCTAAGCATATGG
Found at i:36210228 original size:26 final size:26
Alignment explanation
Indices: 36210179--36210229 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
36210169 TTGACTTAGG
*
36210179 CATACAGAGTTCATCTCCAGTCTAAT
1 CATACAGAGTTCATCTCCAATCTAAT
36210205 CATACAGAGTTCAT-TCACAATCTAA
1 CATACAGAGTTCATCTC-CAATCTAA
36210230 GATTAGACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.35, C:0.25, G:0.10, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATCTCCAATCTAAT
Found at i:36210546 original size:26 final size:26
Alignment explanation
Indices: 36210515--36210567 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36210505 GTTGACTTAG
36210515 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
36210541 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
36210567 G
1 G
36210568 ATTAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:36210574 original size:337 final size:335
Alignment explanation
Indices: 36209714--36210718 Score: 1146
Period size: 342 Copynumber: 3.0 Consensus size: 335
36209704 GATCAGACCA
*
36209714 GATCGAGGGTTACGGTAGT-AGGATCGACAGCACGTAG-GGGGGACCGGGTCGATCCCCGGCTTG
1 GATCGAGGGTTATGGTAGTGA-GATCGACAGCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTG
* * * ** *
36209777 CGCATTTTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
65 CGCATTCTACCTCTCCGATCGGCTGAGCG-CCATACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * *
36209842 GGAGTTCAT-TCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGG
129 AGAGTTCATCTCCA-GTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATTAGACCAGACCGAGG
* * * *
36209906 GTTACGGTAGCAGGATCGATAGCATGCAGGGGGGATCAGGCCGATCCCCAGCTTGCGCATTTTGC
192 GTTACGGTAGCAGGATCGATAGCATGCAGGGGGGACCGGGCCGAT-CCCGGCTTGCGCATTCTGC
* * * * * * * *
36209971 CTCTTTGGCCGGTTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGACTTCATT
256 CTCTTCGACC-GCTGAGCACCTGTACGCACATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT
36210036 CCATGTCTAAGCCCCAGTCG
320 CCA--TCT-A-CCCCAGTCG
* * * * * * * *
36210056 GATCGAGGGCTGTGGCAGTGGGACCGA-AGCACGTAGAGGGGGACCAGGTCAATCCCCGGCTTAC
1 GATCGAGGGTTATGGTAGTGAGATCGACAGCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTGC
* * * *
36210120 GCATTCTACCTCTCCGGTCGGTTGAGCGCTCATACGCTTGTATCGTGGGTTGACTTAGGCATACA
66 GCATTCTACCTCTCCGATCGGCTGAGCGC-CATACGCTCGTTTCGTGGGTTGACTTAGGCATACA
* * * * *
36210185 GAGTTCATCTCCAGTCTAATCATACAGAGTTCATTCACAATCTAAGATTAGACTAGACAGAGGGT
130 GAGTTCATCTCCAGTCTAAGCATACGGAGTTCATTC-CAGTCTAAGATTAGACCAGACCGAGGGT
* * * *
36210250 TGCGGTAGCAGGATCGGTGGCATGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTACCT
194 TACGGTAGCAGGATCGATAGCATGCAGGGGGGACCGGGCCGATCC-CGGCTTGCGCATTCTGCCT
** **
36210315 CTTCGACCGACTGAGCACCTACACGCACATTTCATGGGTTACCTTAGGCATAGGGAGTTCATTCC
258 CTTCGACCG-CTGAGCACCTGTACGCACATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCC
36210380 AT-T-CCCCAG-CG
322 ATCTACCCCAGTCG
* * *
36210391 AGA-CTGAGGGTTATGGTAGTGAGATCGACAGCATGCAGAGGGGGACCGGG-CTGATCCCCGACT
1 -GATC-GAGGGTTATGGTAGTGAGATCGACAGCACGTAGAGGGGGACCGGGTC-GATCCCCGGCT
* * * *
36210454 TGCGCATTCTACCTCTCCGATCGACTGAACGTCCATACACTCATTTCGTGGGTTGACTTAGGCAT
63 TGCGCATTCTACCTCTCCGATCGGCTGAGCG-CCATACGCTCGTTTCGTGGGTTGACTTAGGCAT
*
36210519 ACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCAGACCGAG
127 ACAGAGTTCATCTCCAGTCTAAGCATACGGAGTTCATTCC-AGTCTAAGATTAGACCAGACCGAG
* * * * *
36210584 GGTTACGGTAGCAGGATCAATAGCACGCATGGGGGACAGGGCCGATCCCTGACTTGCGCATTCTG
191 GGTTACGGTAGCAGGATCGATAGCATGCAGGGGGGACCGGGCCGATCCC-GGCTTGCGCATTCTG
* * * * * * * *
36210649 CCTCTCCGGTCTGCTGAGCACCTGTATGCTCATTTCGTGAGTTGGCTTAGGCATACGGAGTTCAT
255 CCTCTTC-GACCGCTGAGCACCTGTACGCACATTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
36210714 TCCAT
319 TCCAT
36210719 GTCTAAGCAT
Statistics
Matches: 555, Mismatches: 93, Indels: 35
0.81 0.14 0.05
Matches are distributed among these distances:
335 3 0.01
336 29 0.05
337 246 0.44
338 4 0.01
339 1 0.00
340 1 0.00
341 14 0.03
342 253 0.46
343 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (335 bp):
GATCGAGGGTTATGGTAGTGAGATCGACAGCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTGC
GCATTCTACCTCTCCGATCGGCTGAGCGCCATACGCTCGTTTCGTGGGTTGACTTAGGCATACAG
AGTTCATCTCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATTAGACCAGACCGAGGGTTA
CGGTAGCAGGATCGATAGCATGCAGGGGGGACCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTT
CGACCGCTGAGCACCTGTACGCACATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATCT
ACCCCAGTCG
Found at i:36211457 original size:26 final size:26
Alignment explanation
Indices: 36211421--36211471 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
36211411 TGACGTAGGC
36211421 ATACGGAGTTCA-TCCCTAGTCTAAGG
1 ATACGGAGTTCATTCCC-AGTCTAAGG
36211447 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
36211472 ATCAAACTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGG
Found at i:36211794 original size:26 final size:26
Alignment explanation
Indices: 36211764--36211814 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
36211754 TGGCTTAGGT
36211764 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
36211790 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
36211815 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:36212172 original size:26 final size:26
Alignment explanation
Indices: 36212142--36212194 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
36212132 GTTGACTTAG
36212142 GCATACGAAGTTCATCCTCAGTCTAA
1 GCATACGAAGTTCATCCTCAGTCTAA
*
36212168 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATCCTCAGTCTAA
36212194 G
1 G
36212195 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCTCAGTCTAA
Found at i:36213213 original size:159 final size:155
Alignment explanation
Indices: 36212852--36213353 Score: 481
Period size: 158 Copynumber: 3.2 Consensus size: 155
36212842 CCCAGTCAAA
* *
36212852 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGAACCGAGGGTTGCAGCAGTAAGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCG-ACCGAGGGTTGCAGCAG-CAGATCGGT
* * * * *
36212916 AGCACGCAGAGGGGATCGAGCCGATTCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGC
63 AGCACGTAGAGGGGATCGGGCCGA-TCCCCGCTTGCGCATTCTGCCTCTCCGTCCAGCTGAGTGC
* ** * *
36212981 CCGTATGCTTATTTCTTGGGTTGGCTTAA
127 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** ** ** *
36213010 GCATAGGGAGTTCATTGCATGTCAAAGCCCCAG-CCGGATTGAGGGTTGTGGCTGCGAGATCGGT
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACC-GACCGAGGGTTGCAGCAGC-AGATCGGT
* * * ** ***
36213074 AGCACGTAGAGGAGGATCGGGCCAATCCCCTGCTTGCGCATTATGCCTCTCCGTCTAGCCCAACA
63 AGCACGTAGAGG-GGATCGGGCCGATCCCC-GCTTGCGCATTCTGCCTCTCCGTCCAGCTGAGTG
*
36213139 CCCGTACGCTCGTTTCGTGGGTTGACTTAG
126 CCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* **
36213169 GCATGCGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACC-GACCGAGGGTTGCAGCAGCA-GATCGGT
* * * *
36213233 AACACGTAGGGGGGATCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGA-CTGAGTG
63 AGCACGTAGAGGGGATCGGGCCGATCCCCG-CTTGCGCATTCTGCCTCTCCG-TCCAGCTGAGTG
* * *
36213297 CCCGCACACTCGTTTTGTGGGTTGGCTTAG
126 CCCGTACGCTCGTTTCGTGGGTTGGCTTAG
36213327 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
36213354 CATATGGAGT
Statistics
Matches: 271, Mismatches: 61, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 6 0.02
158 147 0.54
159 116 0.43
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGACCGAGGGTTGCAGCAGCAGATCGGTAGC
ACGTAGAGGGGATCGGGCCGATCCCCGCTTGCGCATTCTGCCTCTCCGTCCAGCTGAGTGCCCGT
ACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:36213321 original size:685 final size:683
Alignment explanation
Indices: 36211848--36213354 Score: 1756
Period size: 684 Copynumber: 2.2 Consensus size: 683
36211838 GTAGCAGGAC
* * * * *
36211848 CAGCAGCAGGATTGACAGCACATAGGAGGGACAGGGCCGATCCTCGGCTTAG-GCATTCTGACTC
1 CAGCAGCAGGATCGACAGCACGTAGGGGGGAC-GGGCCGATCCCCGGCTT-GCGCATTCTGCCTC
* * * * * * **
36211912 TCCGGTCGGCTGAATGCCCGTATGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCA
64 TCCGATCGACTGAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGAAGTTCATTCCA
* * ** * * *
36211977 TGTCTAGGCCCCAGCCGAACCGAGGGTTGTGGCAGTAGGACCCACAACGAGATTGATAGCACGTA
129 TGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGCAACAGGACCCACAACGAGATAGACAGCACATA
* ** * * ** *
36212042 GAAGGGGACTGGGTTGATCCCTGGCTTGTGCATTTTGCCTCTCCGTCCGGCCTCTCCGGCCGGCT
194 GAAGGGGACTGGGCTGATCCCTGGCTTACGCATTATGCCTCTCCGTCCGACCTCTCCAACCGACT
* * *
36212107 GAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCTCAGTCTAAGCAT
259 GAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCAAAGCAT
* *
36212172 ACGAAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAACAC
324 ACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAAGATCGACAACAC
* * * * * *
36212237 GTAAGGGGGACTGGGCCAATCCCCGATTTACGGATTCTGCCTCTCCGATCGGCTGGCACCCGGAC
389 GCAAGGGGGACTGAGCCAATCCCAGACTTACGCATTCTGCCTCTCCGACCGGCTGGCACCCGGAC
* * *
36212302 GCTTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAA
454 GCTTATTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCAAAGCCCCAGCCAGACCAA
* * * * *
36212367 AGGTTGTGGCAGCGGGACTGACAGCATGCAGAGGAGGACCGGGTCGATCCTCGGCTTACGCATTA
519 AGGTTGTGGCAGCGAGACTGACAGCACGCAGAGGAGGACCGGGCCAATCCCCGGCTTACGCATTA
* * * *
36212432 TGCCTCTCTGACTGGCTCAACACCTGCACGCTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTC
584 TGCCTCTCCGACTAGCCCAACACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTC
**
36212497 ATTCCCAATCTAAGATTGGACCGAACCGAGGGTTA
649 ATTCCCAATCTAAGATCAGACCGAACCGAGGGTTA
* * * * * * * *** * *
36212532 C-GACAGTATGATCGGCAGCATGCAGGGGGGACCGAGCCAATCTGTGGCTTGCACATTCTACCTC
1 CAG-CAGCAGGATCGACAGCACGTAGGGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTC
* * ** *
36212596 TCC-AGCCAACTGAGCACCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGAAGTTTATTCC
64 TCCGA-TCGACTGAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGAAGTTCATTCC
* * * * *
36212660 ATGTCTAAGCCCTAGCCGGACCAAGGGTTGTGGCAACAGGACCGACAGCGGGATAGACAGCACAT
128 ATGTCTAAGCCCCAGCCGAACCAAGGGTTGTGGCAACAGGACCCACAACGAGATAGACAGCACAT
* *
36212725 A-AAGGGGGATTGGGCTGATCCTTGGCTTACGCATTATGCCTCTCCGTCCGACCTCTCCAACCGA
193 AGAA-GGGGACTGGGCTGATCCCTGGCTTACGCATTATGCCTCTCCGTCCGACCTCTCCAACCGA
* * *
36212789 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCAAAGC
257 CTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCAAAGC
* * * ** *
36212854 ATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GAACCGAGGGTTGCAGCAGTAAGATCGGTAG
322 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCAGCAGCAAGATCGACAA
* * **
36212918 CACGC-AGAGGGGA-TCGAGCCGATTCCCAG-CTTGCGCATTCTGCCTCTCCGACCGGCTGAGTG
386 CACGCAAG-GGGGACT-GAGCC-AATCCCAGACTTACGCATTCTGCCTCTCCGACCGGCTG-GCA
* * * *
36212980 CCCGTATGCTTATTTCTTGGGTTGGCTTAAGCATAGGGAGTTCATTGCATGTCAAAGCCCCAGCC
447 CCCGGACGCTTATTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCAAAGCCCCAGCC
* *** * * ** * * *
36213045 GGATTGAGGGTTGTGGCTGCGAGA-TCGGTAGCACGTAGAGGAGGATCGGGCCAATCCCCTGCTT
512 AGACCAAAGGTTGTGGCAGCGAGACT-GACAGCACGCAGAGGAGGACCGGGCCAATCCCCGGCTT
* * * * *
36213109 GCGCATTATGCCTCTCCGTCTAGCCCAACACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATG
576 ACGCATTATGCCTCTCCGACTAGCCCAACACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
* * *
36213174 CGGAGTTCATTCCCAGTCTAAGATCAGACC-AGACCGAGGGTTG
641 AGGAGTTCATTCCCAATCTAAGATCAGACCGA-ACCGAGGGTTA
* * *
36213217 CAGCAGCAGGATCGACAACACGTAGGGGGGATCGGGCTGATCCCCGACTTGCGCATTCTGCCTCT
1 CAGCAGCAGGATCGACAGCACGTAGGGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCT
* *
36213282 CCGATCGACTGAGTGCCCGCACACTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
65 CCGATCGACTGAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGAAGTTCATTCCAT
36213347 GTCTAAGC
130 GTCTAAGC
36213355 ATATGGAGTT
Statistics
Matches: 674, Mismatches: 135, Indels: 27
0.81 0.16 0.03
Matches are distributed among these distances:
683 8 0.01
684 349 0.52
685 315 0.47
686 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (683 bp):
CAGCAGCAGGATCGACAGCACGTAGGGGGGACGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTC
CGATCGACTGAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATG
TCTAAGCCCCAGCCGAACCAAGGGTTGTGGCAACAGGACCCACAACGAGATAGACAGCACATAGA
AGGGGACTGGGCTGATCCCTGGCTTACGCATTATGCCTCTCCGTCCGACCTCTCCAACCGACTGA
GCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCAAAGCATAC
GAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAAGATCGACAACACGC
AAGGGGGACTGAGCCAATCCCAGACTTACGCATTCTGCCTCTCCGACCGGCTGGCACCCGGACGC
TTATTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCAAAGCCCCAGCCAGACCAAAG
GTTGTGGCAGCGAGACTGACAGCACGCAGAGGAGGACCGGGCCAATCCCCGGCTTACGCATTATG
CCTCTCCGACTAGCCCAACACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCAT
TCCCAATCTAAGATCAGACCGAACCGAGGGTTA
Found at i:36213363 original size:26 final size:26
Alignment explanation
Indices: 36213327--36213379 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36213317 GTTGGCTTAG
36213327 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
36213353 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
36213379 G
1 G
36213380 ATTTTGAGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:36220154 original size:158 final size:159
Alignment explanation
Indices: 36219879--36220230 Score: 424
Period size: 159 Copynumber: 2.2 Consensus size: 159
36219869 TAAGATCGAA
* * * * * * *
36219879 CCAGATCGAGGGTTGCGACAGTAGGATCGATAGCACGCAGGGGGGATTGGGTCGATCCCCGGCTT
1 CCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGACTT
* * * * * * * * *
36219944 GCGCATTCTGCCTCTTCGACTGGCTGAGCGCCCGTATGCTTGTTTCATGGG-TTGGCTGAGGCAT
66 GCACATTATGCCTCTCCGACCGACTCAGCGCCCGCATGCTCGTTTCAGGGGTTTGGCTGAGGCAT
36220008 ACGGAGTTCATTCCATGTCTAAGCCCCAG
131 ACGGAGTTCATTCCATGTCTAAGCCCCAG
** *
36220037 TTAGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGATCGGG-CTGATCCCCGAC
1 CCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGATCGGGTC-GATCCCCGAC
* * *
36220101 TTGTACATTATGCCTCTCC-AGCCGACTCAGCGCCTGCATGCTCGTTTC-GGGGTTTGGCTTAGG
64 TTGCACATTATGCCTCTCCGA-CCGACTCAGCGCCCGCATGCTCGTTTCAGGGGTTTGGCTGAGG
36220164 CATACGGAGTTCATTCCATGTCTAAGCCCCAG
128 CATACGGAGTTCATTCCATGTCTAAGCCCCAG
* * *
36220196 CCGGACCGAGGGTTGTGGTAGCAGGACCGACAGCA
1 CCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCA
36220231 AGATCGGCAG
Statistics
Matches: 162, Mismatches: 28, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
158 37 0.23
159 125 0.77
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (159 bp):
CCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGACTT
GCACATTATGCCTCTCCGACCGACTCAGCGCCCGCATGCTCGTTTCAGGGGTTTGGCTGAGGCAT
ACGGAGTTCATTCCATGTCTAAGCCCCAG
Found at i:36220383 original size:26 final size:26
Alignment explanation
Indices: 36220347--36220399 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
36220337 GTTGACTTAG
36220347 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATATGGAGTTCATTCCC-AGTCTAA
36220373 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
36220399 G
1 G
36220400 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:36221052 original size:159 final size:158
Alignment explanation
Indices: 36220803--36221110 Score: 420
Period size: 159 Copynumber: 1.9 Consensus size: 158
36220793 GCAAGATCAG
* * * *
36220803 TAGCACACAGAGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTAGGCTGAGTA
1 TAGCACACAGAGGGGATCGGGTCGATCCCCGACTTGCGCATTATACCTCTCCGGTAGGCTCAGCA
* * *
36220868 CCCACACATCCGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAAACCCAGTC
66 CCCACACATCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAAACCCAGTC
* *
36220933 AGACCGATGGTTGTGGCAGCGAGACCGA
131 AGACCGAGGGCTGTGGCAGCGAGACCGA
* * * *
36220961 TAGCACGCAGAGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGGTCGGCTCAGC
1 TAGCACACAGA-GGGGATCGGGTCGATCCCCGACTTGCGCATTATACCTCTCCGGTAGGCTCAGC
* * * **
36221026 ACCCGCAC-GCTCATTTCATGGTTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
65 ACCCACACATC-CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAAACCCAG
*
36221090 TCGGACCGAGGGCTGTGGCAG
129 TCAGACCGAGGGCTGTGGCAG
36221111 TAGGCCCGAT
Statistics
Matches: 129, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
158 11 0.09
159 118 0.91
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
TAGCACACAGAGGGGATCGGGTCGATCCCCGACTTGCGCATTATACCTCTCCGGTAGGCTCAGCA
CCCACACATCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAAACCCAGTC
AGACCGAGGGCTGTGGCAGCGAGACCGA
Found at i:36221271 original size:26 final size:26
Alignment explanation
Indices: 36221241--36221293 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
36221231 GTTGACTTAG
36221241 GCATACAG-AGTTCA-TCCTCAGTCTAA
1 GCATA-AGAAGTTCATTCC-CAGTCTAA
*
36221267 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATTCCCAGTCTAA
36221293 G
1 G
36221294 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCCAGTCTAA
Found at i:36221749 original size:368 final size:368
Alignment explanation
Indices: 36221048--36221836 Score: 870
Period size: 368 Copynumber: 2.1 Consensus size: 368
36221038 ATTTCATGGT
* * * *
36221048 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGCTGTGGCAGTA
1 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGACTGTGACAGTA
* * * * * *
36221113 GGCCCGATAGCGGGATCGACAGCATGTAGACGGAGACTGGGCTGATCCCCGACTTGCGCATTATG
66 GGACCGACAGCGGGATCGACAGCACGTAGACGGAGACCGAGCTGATCCCCGACTTGCACATTATG
* * * * *
36221178 CCTCTCCGGTTGGCCTCTTCGATCGGTTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
131 CCTCTCCGGTTGGCCTCTTCAACCAGCTAAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
*
36221243 ATACAGAGTTCATCCTCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCAGACCGAATCG
196 ATACAGAGTTCATCCTCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAATCG
*** * * * * * *
36221308 AGGGTTACGGCGGTAGGATCAGTAGCACGCAGGGGGGACCAGGTCGATCCCCGATTTACGTATTC
261 AGGGTTACGAAAGTAGGATCAGCAGCACACAGAGGGGACCAGGCCGATCCCCGACTTACGCATTC
* * * * *
36221373 TGCCTCTCCGACCGACTGAGCACCC-GCCCGCCTGTTTTGCGGG
326 TACCTCTCCGACCGACTGAGCACCCAGACAGCC-ATTTCGCGGG
** * * *
36221416 TTGGCTTAGGCATAGGGAGTTCATTCCATACCTAAGCCCCAGTCAGACCGAGGATTTTGATAGTA
1 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGACTGTGACAGTA
* ** * * *
36221481 GGACCGGCAGCGGGATCGGTAGCACGTAGAGGGGGACCGAGCTGATCCCCGGCTTGCACATTATG
66 GGACCGACAGCGGGATCGACAGCACGTAGACGGAGACCGAGCTGATCCCCGACTTGCACATTATG
* * * **
36221546 CCTCTCTGGTTGGCCT-TTCCAACCAGCTAAGTGCCCGTATGCTCGTTTTGTGGGTTGACTTAGG
131 CCTCTCCGGTTGGCCTCTT-CAACCAGCTAAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
* * * * ** *
36221610 CATACGGAGTTCATCC-CTGATGTAAGCATACGGAGTTCATTCTGAGTCTAAGATC-GAACCGGA
195 CATACAGAGTTCATCCTCAG-TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAG-ACCGAA
* * * *
36221673 TCGAGGGTTACGAAAGTAGGATC-GACAGCACATAGAGGGGACC-GAGCCGATCCCGGGCTTGCG
258 TCGAGGGTTACGAAAGTAGGATCAG-CAGCACACAGAGGGGACCAG-GCCGATCCCCGACTTACG
** * * * * * *
36221736 CATTCTACCTCTCCGGTCGATTGAGCGCCCATACATCCATTTCGTGTG
321 CATTCTACCTCTCCGACCGACTGAGCACCCAGACAGCCATTTCGCGGG
* * *
36221784 TTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGG
1 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGG
36221837 GTTATGGCAG
Statistics
Matches: 345, Mismatches: 70, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
367 7 0.02
368 335 0.97
369 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (368 bp):
TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGACTGTGACAGTA
GGACCGACAGCGGGATCGACAGCACGTAGACGGAGACCGAGCTGATCCCCGACTTGCACATTATG
CCTCTCCGGTTGGCCTCTTCAACCAGCTAAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
ATACAGAGTTCATCCTCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAATCG
AGGGTTACGAAAGTAGGATCAGCAGCACACAGAGGGGACCAGGCCGATCCCCGACTTACGCATTC
TACCTCTCCGACCGACTGAGCACCCAGACAGCCATTTCGCGGG
Found at i:36221963 original size:159 final size:157
Alignment explanation
Indices: 36221800--36222137 Score: 369
Period size: 158 Copynumber: 2.1 Consensus size: 157
36221790 TAGGCATAGG
* ** *
36221800 GAGTTCATTCCATGTCTAAGCCCTAG-CCAGACCGAGGGTTATGGCAGCGGGA-CTGACAGCACG
1 GAGTTCATTCC-TGTCTAAGCCC-AGACCAGACCAAGGGTTACAGCAGCAGGATC-GACAGCACG
* * * *
36221863 TAGAGGGGGATCG-GGCTGATCCCC-GACTTGCACATTATGCCTCTTCGACCGGCTCAGCGCCCG
63 CAG-GGGGGACCGAGTC-GATCCCCAG-CTTGCACATTATGCCTCTTCGACCGACTCAGCGCCCG
36221926 CACGCTCGTTTCGTGGGTTGACTTACGCATACA
125 CACGCTCGTTTCGTGGGTTGACTTACGCATACA
* ** * * * *
36221959 GAGTTCATTCCTAGTGTAAGATCAGACCGGATCAAGGGTTACAGTAGCAGGATCGAGAGCACGCA
1 GAGTTCATTCCT-GTCTAAGCCCAGACCAGACCAAGGGTTACAGCAGCAGGATCGACAGCACGCA
* * * * *
36222024 GGGGGGACCGAGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCGATCGACTGAGTGCCCGCACGC
65 GGGGGGACCGAGTCGATCCCCAGCTTGCACATTATGCCTCTTCGACCGACTCAGCGCCCGCACGC
* * *
36222089 TCGTTTCGTGGGTTGGCTTAGGCATACG
130 TCGTTTCGTGGGTTGACTTACGCATACA
36222117 GAGTTCATTCCTTGTCTAAGC
1 GAGTTCATTCC-TGTCTAAGC
36222138 ATACGGAGTT
Statistics
Matches: 148, Mismatches: 25, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
158 96 0.65
159 51 0.34
160 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GAGTTCATTCCTGTCTAAGCCCAGACCAGACCAAGGGTTACAGCAGCAGGATCGACAGCACGCAG
GGGGGACCGAGTCGATCCCCAGCTTGCACATTATGCCTCTTCGACCGACTCAGCGCCCGCACGCT
CGTTTCGTGGGTTGACTTACGCATACA
Found at i:36222149 original size:895 final size:888
Alignment explanation
Indices: 36219789--36221969 Score: 2168
Period size: 894 Copynumber: 2.4 Consensus size: 888
36219779 TCGACTGAGT
* * * *
36219789 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC-AGTCTAAGCACACG
1 GCCCGCATGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCGA-TGTAAGCATACG
* ** * * * * * * * *
36219853 AAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTGCGACAGTAGGATC-GATAGCACGC
65 GAGTTCATTCTGAGTCTAAGATCGAACCGGATCAAGGGTTACGAAAGCAAGATCAG-CAGCACAC
* ** * * * * * * * **
36219917 AGGGGGGATTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACT-GGCTGAGC-GCC-CGT
129 AGAGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCG-GTAGACTGAGCACCCACAC
** * ** **
36219979 ATGCTTGTTTCATGGGTTGGC-TGAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTTAGAC
193 AT-C-CATTTCATGGGTTGGCAT-AGGCATAGGGAGTTCATTCCATGTCTAAAACCCAGCCAGAC
* * * *
36220043 CGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGATCGGG-CTGATCCCCGACTTGTAC
255 CGAGGGTTATGGCAGCGAGACCGACAGCACGCAGAGGGGGATCGGGTC-GATCCCCGACTTGCAC
* * * * * * * * * *
36220107 ATTATGCCTC-TCCAGCCGACTCAGCGCCTGCATGCTCGTTTC-GGGGTTTGGCTTAGGCATACG
319 ATTATGCCTCTTCGA-CCGGCTCAGCACCCGCACGCTCATTTCATGGG-TTGACTTACGCATACA
* * * ** * *
36220170 GAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAGGACCGACAGCAAGAT
382 GAGTTCATTCCATGTCTAAGCACCAGCCGGACCAAGGGCTGTGACAGTAGG-CC-A-AG--GGAT
* * * * * *
36220235 CGGCAGCATGCAGA-GGAGGACTGGGTTGATCCTCGACTTGCGCATTATGTCTCTCCGACT-GGC
442 CGACAGCACGCAGACGGA-GACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCG-CTAGGC
* * * * * ** * * * ** * *
36220298 CACTC-CGGTTGGCTGAGCGCCCAAACGCTTGTTTCGTGGGTTGACTTAGGCATATGGAGTTCAT
505 CTC-CACGATCGGTTGAGGGCCCGCACGCTCGGTTCATGCCTTGACTTAAGCATACGGAGTTCAT
* *
36220362 CCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTACGGCAG
569 CCC-AGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAAGGTTACGGCAG
* * * * ** *
36220427 TAGGAGTGATAGCATGCAAGGGGGACCGAACCGATCCCTGGCTTGTGCATTCCGCCTTTCCGATC
633 TAGGAGTCATAGCACGCAAGGGGGACCGAACCGATCCCCGACTTACGCATTCCGCCTCTCCGATC
* * ** * * * * *
36220492 TGTTGAGTGCTCGTATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCTAAG
698 CGCTGAGCACCCGCACGCCCGTTTCACGGGTTGGCTTAGGCATAGGGAGTTCATTCCATCCTAAG
* * * * * *
36220557 CCCTAGCTGGACCGAGGGTTGTGGCAGCAGGACCAGCAATGGGATCGGTAACATGTAGAGGGGGA
763 CCCCAGCTAGACCGAGGATTGTGACAGCAGGACCAGCAACGGGATCGGTAACACGTAGAGGGGGA
* ** * * *
36220622 CCGAGCTAATCCCTGGCTTGTGCATTATGCCTCTCTGGTCGGCCTCTCCAGCCGGATGAGC
828 CCGAGCTAATCCCCGGCTTGCACATTATGCCTCTCTGGTCGGCCTCTCCAACCAGATAAGC
* * *
36220683 GCCTGCATGCTCGTTTCATAGGTTGACTTAGGCGTACGGAGTTCATCCCCGATGTAAGCATATGG
1 GCCCGCATGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCGATGTAAGCATACGG
* ** * ** *
36220748 AGTTCATTCTGAGTCTATGATCGAATTGGATCAAGGGTTGCGGTAGCAAGATCAGTAGCACACAG
66 AGTTCATTCTGAGTCTAAGATCGAACCGGATCAAGGGTTACGAAAGCAAGATCAGCAGCACACAG
* * * * *
36220813 AGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTAGGCTGAGTACCCACACATC
131 AGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTAGACTGAGCACCCACACATC
* * * * *
36220878 CGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAAACCCAGTCAGACCGATGG
196 CATTTCATGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAAACCCAGCCAGACCGAGGG
* * *
36220943 TTGTGGCAGCGAGACCGATAGCACGCAGAGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGC
261 TTATGGCAGCGAGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGACTTGCACATTATGC
** * * * *
36221008 CTCTTCGGTCGGCTCAGCACCCGCACGCTCATTTCATGGTTTGGCTTAGGCATACGGAGTTCATT
326 CTCTTCGACCGGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTACGCATACAGAGTTCATT
* * * * *
36221073 CCATGTCTAAGCCCCAGTCGGACCGAGGGCTGTGGCAGTAGGCCCGATAGCGGGATCGACAGCAT
391 CCATGTCTAAGCACCAGCCGGACCAAGGGCTGTGACAGTAGG-CC-A-A--GGGATCGACAGCAC
* * * * **
36221138 GTAGACGGAGACTGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGGTTGGCCTCTTCGATCG
451 GCAGACGGAGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGCTAGGCCTCCACGATCG
* * ** * *
36221203 GTTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCTCAGTCTAAG
516 GTTGAGGGCCCGCACGCTCGGTTCATGCCTTGACTTAAGCATACGGAGTTCATCC-CAGTCTAAG
* *
36221268 CATATGAAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTACGGCGGTAGGA-TCAGTA
580 CATATGAAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAAGGTTACGGCAGTAGGAGTCA-TA
* ** * * *
36221332 GCACGCAGGGGGGACC-AGGTCGATCCCCGATTTACGTATTCTGCCTCTCCGA-CCGACTGAGCA
644 GCACGCAAGGGGGACCGA-ACCGATCCCCGACTTACGCATTCCGCCTCTCCGATCCG-CTGAGCA
* * **
36221395 CCCGCCCGCCTGTTTTGCGGGTTGGCTTAGGCATAGGGAGTTCATTCCATACCTAAGCCCCAG-T
707 CCCGCACGCCCGTTTCACGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT-CCTAAGCCCCAGCT
* * * * * *
36221459 CAGACCGAGGATTTTGATAGTAGGACCGGCAGCGGGATCGGTAGCACGTAGAGGGGGACCGAGCT
771 -AGACCGAGGATTGTGACAGCAGGACCAGCAACGGGATCGGTAACACGTAGAGGGGGACCGAGCT
* * * * *
36221524 GATCCCCGGCTTGCACATTATGCCTCTCTGGTTGGCCTTTCCAACCAGCTAAGT
835 AATCCCCGGCTTGCACATTATGCCTCTCTGGTCGGCCTCTCCAACCAGATAAGC
* ** * *
36221578 GCCCGTATGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCTGATGTAAGCATACGG
1 GCCCGCATGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCGATGTAAGCATACGG
* * * *
36221643 AGTTCATTCTGAGTCTAAGATCGAACCGGATCGAGGGTTACGAAAGTAGGATC-GACAGCACATA
66 AGTTCATTCTGAGTCTAAGATCGAACCGGATCAAGGGTTACGAAAGCAAGATCAG-CAGCACACA
* * * * *
36221707 GAGGGGACCGAGCCGATCCCGGGCTTGCGCATTCTACCTCTCCGGTCGATTGAGCGCCCATACAT
130 GAGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTAGACTGAGCACCCACACAT
* * *
36221772 CCATTTCGTGTGTTGGCATAGGCATAGGGAGTTCATTCCATGTCT-AAGCCCTAGCCAGACCGAG
195 CCATTTCATGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAAACCC-AGCCAGACCGAG
* * *
36221836 GGTTATGGCAGCGGGACTGACAGCACGTAGAGGGGGATCGGG-CTGATCCCCGACTTGCACATTA
259 GGTTATGGCAGCGAGACCGACAGCACGCAGAGGGGGATCGGGTC-GATCCCCGACTTGCACATTA
* * *
36221900 TGCCTCTTCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTACGCATACAGAGTTC
323 TGCCTCTTCGACCGGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTACGCATACAGAGTTC
36221965 ATTCC
388 ATTCC
36221970 TAGTGTAAGA
Statistics
Matches: 1083, Mismatches: 181, Indels: 45
0.83 0.14 0.03
Matches are distributed among these distances:
893 7 0.01
894 621 0.57
895 451 0.42
896 4 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (888 bp):
GCCCGCATGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCGATGTAAGCATACGG
AGTTCATTCTGAGTCTAAGATCGAACCGGATCAAGGGTTACGAAAGCAAGATCAGCAGCACACAG
AGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTAGACTGAGCACCCACACATC
CATTTCATGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAAACCCAGCCAGACCGAGGG
TTATGGCAGCGAGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGACTTGCACATTATGC
CTCTTCGACCGGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTACGCATACAGAGTTCATT
CCATGTCTAAGCACCAGCCGGACCAAGGGCTGTGACAGTAGGCCAAGGGATCGACAGCACGCAGA
CGGAGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGCTAGGCCTCCACGATCGGTTGA
GGGCCCGCACGCTCGGTTCATGCCTTGACTTAAGCATACGGAGTTCATCCCAGTCTAAGCATATG
AAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAAGGTTACGGCAGTAGGAGTCATAGCACGCA
AGGGGGACCGAACCGATCCCCGACTTACGCATTCCGCCTCTCCGATCCGCTGAGCACCCGCACGC
CCGTTTCACGGGTTGGCTTAGGCATAGGGAGTTCATTCCATCCTAAGCCCCAGCTAGACCGAGGA
TTGTGACAGCAGGACCAGCAACGGGATCGGTAACACGTAGAGGGGGACCGAGCTAATCCCCGGCT
TGCACATTATGCCTCTCTGGTCGGCCTCTCCAACCAGATAAGC
Found at i:36222159 original size:26 final size:26
Alignment explanation
Indices: 36222110--36222162 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
36222100 GTTGGCTTAG
* *
36222110 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCACTCCTAGTCTAA
36222136 GCATACGGAGTTCACTCAC-AGTCTAA
1 GCATACGGAGTTCACTC-CTAGTCTAA
36222162 G
1 G
36222163 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCTAGTCTAA
Found at i:36223746 original size:159 final size:159
Alignment explanation
Indices: 36223470--36223887 Score: 380
Period size: 159 Copynumber: 2.6 Consensus size: 159
36223460 GGACCGGGCT
* * * * * ** *** * *
36223470 GATCCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCTGTACGCCCGTTTCATGGGTT
1 GATCCCCGACTTGCACATTATGCCTCTCCAACCGACTCAATGCCCACACGCTCGTTTCGTGGGTT
* * * * *
36223535 GGCTTAGGCATAGGGAGTTCATT-CTACGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGG
66 GGCTTAGGCATACGGAGTTCATTCCCACGTCTAAGCACCAACCGGACCAAGGGTTGTGGCAGCAG
* * * *
36223599 GACCGGT-AGCACGCAGAGGGGGATCGGGTT
131 GACC-ATCAACACGCA-AAGGGGATCGGGTC
* * * * *
36223629 GATCCTCGACTTGCGCATTATG-CTGCTTCAACCGACTCATTGCCCACATGCTCGTTTCGTGGGT
1 GATCCCCGACTTGCACATTATGCCT-CTCCAACCGACTCAATGCCCACACGCTCGTTTCGTGGGT
* * ** * *
36223693 TGGCTTATGCATACGGAGTTCATTCCCA-GTGTAAG-ATTAGACCGGACCAAGGGTTGTGGTAGT
65 TGGCTTAGGCATACGGAGTTCATTCCCACGTCTAAGCACCA-ACCGGACCAAGGGTTGTGGCAGC
* * *
36223756 AGGATCATCAATATGCAAAGGGGATCGGGTC
129 AGGACCATCAACACGCAAAGGGGATCGGGTC
* * * * * *
36223787 GATCCCCGGCTTGCACATTTTGCCTCTCCGACCGACTGAATGCCCTCACGCTCATTTCGTGGGTT
1 GATCCCCGACTTGCACATTATGCCTCTCCAACCGACTCAATGCCCACACGCTCGTTTCGTGGGTT
*
36223852 GGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCA
66 GGCTTAGGCATACGGAGTTCATTCCCACGTCTAAGCA
36223888 TAAGGAGTTC
Statistics
Matches: 207, Mismatches: 45, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 95 0.46
159 107 0.52
160 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.28, T:0.26
Consensus pattern (159 bp):
GATCCCCGACTTGCACATTATGCCTCTCCAACCGACTCAATGCCCACACGCTCGTTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCCACGTCTAAGCACCAACCGGACCAAGGGTTGTGGCAGCAG
GACCATCAACACGCAAAGGGGATCGGGTC
Found at i:36223895 original size:26 final size:26
Alignment explanation
Indices: 36223859--36223911 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36223849 GTTGGCTTAG
*
36223859 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
36223885 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
36223911 G
1 G
36223912 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:36224623 original size:26 final size:26
Alignment explanation
Indices: 36224593--36224644 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
36224583 TTGACTTAGA
36224593 CATACAGAGTTCATCCCCAATCTAAG
1 CATACAGAGTTCATCCCCAATCTAAG
* * *
36224619 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAATCTAAG
36224645 AGCAGATTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAATCTAAG
Found at i:36225065 original size:158 final size:157
Alignment explanation
Indices: 36224657--36225278 Score: 642
Period size: 158 Copynumber: 3.9 Consensus size: 157
36224647 CAGATTGGAT
* * * * *
36224657 CGAGGGTTGTGGCAGTAGGATCGATAGCACGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCAT
1 CGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGGGA-CGGGTCGATCCCCGGCTTGCACAT
* * * *
36224722 TCTGCCTCTCCGGCCAGCTGAGCACCTGCACGC-CTGTTTCATGGGTTAGCTTAGGCATAGGGAG
65 TCTGCCTCTCCGACCAGCTGAGCACCCGCACGCTC-GTTTCATGGGTTGGCTTAGGCATACGGAG
*
36224786 TTCATTCCATGTCTAAGCCCTAGCCAGAC
129 TTCATTCCATGTCTAAGCCCAAGCCAGAC
* * * * * *
36224815 CGATGGTTGCGGTAGC-GGTACCGATAGCATGCAGATGGGGACTGGGTCGATCCCCGGCTTGCAC
1 CGAGGGTTGTGGCAGCAGG-ACCGACAGCACGCAG-GGGGGAC-GGGTCGATCCCCGGCTTGCAC
* * * * *
36224879 ATTCTGCCTGTCCGACCAGCTGAGCACCCGTACACTTGTTTCGTGGGTTGGCTTAGGCATACGGA
63 ATTCTGCCTCTCCGACCAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
* *
36224944 GTTCATTCCATGTCTAA-CCCCAGTCAGAC
128 GTTCATTCCATGTCTAAGCCCAAGCCAGAC
* * * *
36224973 CGAGGGTTGTGGCAGCACGACCGACAACACGCAGAGGGGGATCAGGTCGATCCCCGGCTTGCGCA
1 CGAGGGTTGTGGCAGCAGGACCGACAGCACGCAG-GGGGGA-CGGGTCGATCCCCGGCTTGCACA
* * * * * * * * *
36225038 TTATGCCTCTCTGGCCGGTTCAACACCCGCACCCTCATTTCATGGGTTGAG-TTAGGCATACGGA
64 TTCTGCCTCTCCGACCAGCTGAGCACCCGCACGCTCGTTTCATGGGTTG-GCTTAGGCATACGGA
** * *
36225102 GTTCATTCC-TAGTCTAAGATCAAACCAGAT
128 GTTCATTCCAT-GTCTAAGCCCAAGCCAGAC
* * * * * * * * *
36225132 CGAGGGTTCTAGTAGTAGGATCGACAGCACGCTGGGGGGATCGGGCCGGTCCCCGGCTTACACAT
1 CGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGGGA-CGGGTCGATCCCCGGCTTGCACAT
** * *
36225197 TCTGCCTCTCCGACTGGCTGAGCACCCGTACGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGT
65 TCTGCCTCTCCGACCAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
36225262 TCATTCCATGTCTAAGC
130 TCATTCCATGTCTAAGC
36225279 ATATGGAGTT
Statistics
Matches: 379, Mismatches: 74, Indels: 22
0.80 0.16 0.05
Matches are distributed among these distances:
157 4 0.01
158 243 0.64
159 132 0.35
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
CGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGGGACGGGTCGATCCCCGGCTTGCACATT
CTGCCTCTCCGACCAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGCCCAAGCCAGAC
Found at i:36225267 original size:316 final size:316
Alignment explanation
Indices: 36224657--36225276 Score: 770
Period size: 316 Copynumber: 2.0 Consensus size: 316
36224647 CAGATTGGAT
* * * * * *
36224657 CGAGGGTTGTGGCAGTAGGATCGATAGCACGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCAT
1 CGAGGGTTGTGGCAGCACGACCGACAACACGCAGGGGGGACAGAGTCGATCCCCGGCTTGCGCAT
* * * * * *
36224722 TCTGCCTCTCCGGCCAGCTGAGCACCTGCACGCCTGTTTCATGGGTTAGCTTAGGCATAGGGAGT
66 TATGCCTCTCCGGCCAGCTCAACACCCGCACGCCTATTTCATGGGTTAGCTTAGGCATACGGAGT
* * * * * * * * *
36224787 TCATTCCATGTCTAAGCCCTAGCCAGACCGATGGTTGCGGTAGCGGTACCGATAGCATGCAGATG
131 TCATTCCATGTCTAAGACCAAACCAGACCGAGGGTTGCAGTAGAGGTACCGACAGCACGCAGAGG
* * * *
36224852 GGGACTGGGTCGATCCCCGGCTTGCACATTCTGCCTGTCCGACCAGCTGAGCACCCGTACACTTG
196 GGGACTGGGCCGATCCCCGGCTTACACATTCTGCCTCTCCGACCAGCTGAGCACCCGTACACTCG
*
36224917 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAACCCCAGTCAGAC
261 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAACCCCAGTCAGAC
36224973 CGAGGGTTGTGGCAGCACGACCGACAACACGCAGAGGGGGATCAG-GTCGATCCCCGGCTTGCGC
1 CGAGGGTTGTGGCAGCACGACCGACAACACGCAG-GGGGGA-CAGAGTCGATCCCCGGCTTGCGC
* * *
36225037 ATTATGCCTCTCTGGCCGGTTCAACACCCGCAC-CCTCATTTCATGGGTTGAG-TTAGGCATACG
64 ATTATGCCTCTCCGGCCAGCTCAACACCCGCACGCCT-ATTTCATGGGTT-AGCTTAGGCATACG
* * *
36225100 GAGTTCATTCC-TAGTCTAAGATCAAACCAGATCGAGGGTT-CTAGTAGTAGG-ATCGACAGCAC
127 GAGTTCATTCCAT-GTCTAAGACCAAACCAGACCGAGGGTTGC-AGTAG-AGGTACCGACAGCAC
* * **
36225162 GCTG-GGGGGA-TCGGGCCGGTCCCCGGCTTACACATTCTGCCTCTCCGACTGGCTGAGCACCCG
189 GCAGAGGGGGACT-GGGCCGATCCCCGGCTTACACATTCTGCCTCTCCGACCAGCTGAGCACCCG
* *
36225225 TACGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
253 TACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
36225277 GCATATGGAG
Statistics
Matches: 258, Mismatches: 38, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
315 1 0.00
316 132 0.51
317 119 0.46
318 6 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (316 bp):
CGAGGGTTGTGGCAGCACGACCGACAACACGCAGGGGGGACAGAGTCGATCCCCGGCTTGCGCAT
TATGCCTCTCCGGCCAGCTCAACACCCGCACGCCTATTTCATGGGTTAGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGACCAAACCAGACCGAGGGTTGCAGTAGAGGTACCGACAGCACGCAGAGG
GGGACTGGGCCGATCCCCGGCTTACACATTCTGCCTCTCCGACCAGCTGAGCACCCGTACACTCG
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAACCCCAGTCAGAC
Found at i:36225286 original size:26 final size:26
Alignment explanation
Indices: 36225251--36225303 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36225241 GTTGGCTTAG
36225251 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
36225277 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
36225303 G
1 G
36225304 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:36225413 original size:184 final size:184
Alignment explanation
Indices: 36225093--36225462 Score: 483
Period size: 184 Copynumber: 2.0 Consensus size: 184
36225083 GTTGAGTTAG
* *
36225093 GCATACGGAGTTCATTCCTAGTCTAAGATCAAACCAGATCGAGGGTTCTAGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTCTAGTAGCAGGATCGACA
* * * * * * * *
36225158 GCACGCTGGGGGGATCGGGCCGGTCCCCGGCTTACACATTCTGCCTCTCCGACTGGCTGAGCACC
66 GCACGCAGGAGGGATCAGGCCGATCCCCAGCTTACACATTCTACCTCTCCAACTGACTGAGCACC
*
36225223 CGTACGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* *** * *
36225277 GCATATGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGA-GGTT-TACGGTAGCAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTCTA--GTAGCAGGATCGA
* * * * * *
36225340 CAGCATGCAGGAGGGATCAGGCCGATCCCCAGCTTGCGCATTCTACCTCTTCAACTGATTGAGCG
64 CAGCACGCAGGAGGGATCAGGCCGATCCCCAGCTTACACATTCTACCTCTCCAACTGACTGAGCA
* *
36225405 CCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAA
129 CCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
36225461 GC
1 GC
36225463 CCCAGTCGAA
Statistics
Matches: 159, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
182 2 0.01
183 4 0.03
184 153 0.96
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTCTAGTAGCAGGATCGACA
GCACGCAGGAGGGATCAGGCCGATCCCCAGCTTACACATTCTACCTCTCCAACTGACTGAGCACC
CGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:36225598 original size:342 final size:342
Alignment explanation
Indices: 36225233--36225962 Score: 839
Period size: 342 Copynumber: 2.1 Consensus size: 342
36225223 CGTACGCTCG
* *
36225233 TTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
* * ** *
36225298 TCTAAGATTGGATCGGATCG-AGGTTTACGGTAGCAGGATCGACAGCATGCAGGAGGGATC-AGG
66 TCTAAGATCGGATCGGACCGAAGG-TTACGACAGCAGGATCGACAGCATGCAGAAGGGA-CGA-G
* * ** * *
36225361 CCGATCCCCAGCTTGCGCATTCTACCTCTTCAACT-GATTGAGCGCCCGTACGCTCGTTTCATGG
128 CCGATCCCCAGCTTGCGCATTCTACCTCTTC-ACTCGATTGAACCCCCACACGCTCGTTTCACGA
** ** * * *** *
36225425 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAGTC-GAACCGAGGGTTGTGGTAG
192 GTTGGCTTAGGCATACAGAGTTCATTCCATGCCTAAGCACCAATCAG-ACCGAGGGTTGTCACAA
* ** * *
36225489 CGGGAT-CGAAGCACGCAGAGGGGGACTAGG-CCGATCCTCGACTTGA-GCATCCTGTCTCTCTG
256 CAGGATGCGAAGCACAAAGAGGGGGA-TAGGACCGATCCTCGACTT-ACGCATCATGCCTCTCTG
* * *
36225551 -GTCGACTGAGTGCCCACACACTCA
319 ACT-GACTCAGCGCCCACACACTCA
* * *
36225575 TTTCTTGGGTTGACTTAGGCATACGGAGTTCATCGCCA-GTCTAAGCATACGGAGTTCATTCCCA
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCA
* * * * *
36225639 GTCTAAGATCGGATTGGACCGAAGGTTGCGACAGCAGGATCTATAGCATGCAGAAGGGACGAGCT
65 GTCTAAGATCGGATCGGACCGAAGGTTACGACAGCAGGATCGACAGCATGCAGAAGGGACGAGCC
* * * * * *
36225704 GATCCTCGGCTTGCGCATTCTGCCTCTTCAGTCGGTTGAACCCCCACACGCTTGTTTCACGAGTT
130 GATCCCCAGCTTGCGCATTCTACCTCTTCACTCGATTGAACCCCCACACGCTCGTTTCACGAGTT
36225769 GGCTTAGGCATACAGAGTTCATTCCATGCCTAAGCACCAATCAGACCGAGGGTTGTCACAACAGG
195 GGCTTAGGCATACAGAGTTCATTCCATGCCTAAGCACCAATCAGACCGAGGGTTGTCACAACAGG
* * * * *
36225834 ATGGGTAGCACAAAGAGGGGGATCGGACCGATCCTTGACTTACGCATTATGCCTCTCTGACTGAC
260 ATGCGAAGCACAAAGAGGGGGATAGGACCGATCCTCGACTTACGCATCATGCCTCTCTGACTGAC
* * *
36225899 TCAGCGCCCGCACGCTCG
325 TCAGCGCCCACACACTCA
36225917 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
36225963 CCAGCTGGAC
Statistics
Matches: 322, Mismatches: 56, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
340 2 0.01
341 114 0.35
342 199 0.62
343 7 0.02
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.25
Consensus pattern (342 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCGGATCGGACCGAAGGTTACGACAGCAGGATCGACAGCATGCAGAAGGGACGAGCCG
ATCCCCAGCTTGCGCATTCTACCTCTTCACTCGATTGAACCCCCACACGCTCGTTTCACGAGTTG
GCTTAGGCATACAGAGTTCATTCCATGCCTAAGCACCAATCAGACCGAGGGTTGTCACAACAGGA
TGCGAAGCACAAAGAGGGGGATAGGACCGATCCTCGACTTACGCATCATGCCTCTCTGACTGACT
CAGCGCCCACACACTCA
Found at i:36225629 original size:26 final size:26
Alignment explanation
Indices: 36225593--36225645 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
36225583 GTTGACTTAG
36225593 GCATACGGAGTTCA-TCGCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
36225619 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
36225645 G
1 G
36225646 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:36226058 original size:158 final size:158
Alignment explanation
Indices: 36225750--36226154 Score: 487
Period size: 158 Copynumber: 2.6 Consensus size: 158
36225740 TGAACCCCCA
* * * * * * *
36225750 CACGCTTGTTTCACGAGTTGGCTTAGGCATACAGAGTTCATTCCATGCCTAAGCACCAATCAGAC
1 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC-CCAGTCGGAC
* ** * ** * **
36225815 CGAGGGTTGTCACAACAGGATGGGTAGCACAAAGAGGGGGATCGGACCGATCCTTGACTTACGCA
65 CGAGGGTTATGGCAGCAGGACCGATAGCACAAAGAGGGGGATCGGACCGATCCCAGACTTACGCA
* *
36225880 TTATGCCTCTCTGACTGACTCAGCGCCCG
130 TTATGCCTCTCCGACTGACTCAGCACCCG
36225909 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAG-CTGGAC
1 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGTC-GGAC
* * * *
36225973 TGAGGGTTATGGCAGCGGGACCGATAGCACGCAA-AGGGGGATC-GAGCCGATCCCCAG-CTTAT
65 CGAGGGTTATGGCAGCAGGACCGATAGCAC-AAAGAGGGGGATCGGA-CCGAT-CCCAGACTTAC
36226035 GCATTATGCCTCTCCGA-TCGACTCAGCACCCG
127 GCATTATGCCTCTCCGACT-GACTCAGCACCCG
* * *
36226067 CACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCCCCAGTCGGAC
1 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCAGTCGGAC
36226132 CGAGGGTTATGGCAGCAGGACCG
65 CGAGGGTTATGGCAGCAGGACCG
36226155 GCAGCGGGAT
Statistics
Matches: 212, Mismatches: 27, Indels: 14
0.84 0.11 0.06
Matches are distributed among these distances:
157 4 0.02
158 123 0.58
159 84 0.40
160 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (158 bp):
CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGTCGGACC
GAGGGTTATGGCAGCAGGACCGATAGCACAAAGAGGGGGATCGGACCGATCCCAGACTTACGCAT
TATGCCTCTCCGACTGACTCAGCACCCG
Found at i:36226307 original size:26 final size:26
Alignment explanation
Indices: 36226277--36226329 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
36226267 GTTGACTTAG
*
36226277 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
36226303 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
36226329 G
1 G
36226330 ATCGTACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:36226623 original size:26 final size:26
Alignment explanation
Indices: 36226594--36226646 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
36226584 GTTGACTTAG
36226594 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
36226620 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
36226646 G
1 G
36226647 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:36227131 original size:26 final size:26
Alignment explanation
Indices: 36227095--36227147 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36227085 GTTGGCTTAG
36227095 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
* *
36227121 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
36227147 G
1 G
36227148 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:36227852 original size:26 final size:26
Alignment explanation
Indices: 36227816--36227868 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
36227806 GCTGACTTAG
36227816 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
36227842 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
36227868 G
1 G
36227869 ATCAGATTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:36228156 original size:159 final size:159
Alignment explanation
Indices: 36227925--36228217 Score: 401
Period size: 159 Copynumber: 1.8 Consensus size: 159
36227915 GGGGGATCGA
* * *
36227925 GTCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGGCTCAACGCCCGTACACCCATTTCGTGG
1 GTCGATCCCCGGCTTACACATTATGCCTCTCCGGCCGGCTCAACGCCCGTACACCCATTTCATGG
* * * * * *
36227990 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGACAGC
66 GTGGGCTTAGGCATAGAGAGTTCATTCCATATCTAAGCCCCAGCCGAACCGAGGGTTGTGACAAC
36228055 AGGACTGACAGCACTCTGAGGCATAATGG
131 AGGACTGACAGCACTCTGAGGCATAATGG
* * * * *
36228084 GTCGATCCCTGGCTTGCACATTATGCCTCTCCGGTCGGCTCAGCG-CC-TACACGCTCGTTTCAT
1 GTCGATCCCCGGCTTACACATTATGCCTCTCCGGCCGGCTCAACGCCCGTACAC-C-CATTTCAT
* * *
36228147 GGGTGGGCTTAGGCATATAGAGTTCATTCCTTATCTAAGCCCCAGCCGAACCGAGGGTTGTGGCA
64 GGGTGGGCTTAGGCATAGAGAGTTCATTCCATATCTAAGCCCCAGCCGAACCGAGGGTTGTGACA
36228212 ACAGGA
129 ACAGGA
36228218 TCGGTAGTGG
Statistics
Matches: 115, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
157 5 0.04
158 3 0.03
159 107 0.93
ACGTcount: A:0.19, C:0.30, G:0.28, T:0.24
Consensus pattern (159 bp):
GTCGATCCCCGGCTTACACATTATGCCTCTCCGGCCGGCTCAACGCCCGTACACCCATTTCATGG
GTGGGCTTAGGCATAGAGAGTTCATTCCATATCTAAGCCCCAGCCGAACCGAGGGTTGTGACAAC
AGGACTGACAGCACTCTGAGGCATAATGG
Found at i:36229309 original size:26 final size:26
Alignment explanation
Indices: 36229273--36229325 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36229263 GTTGACTTAG
36229273 GCATACGGAGTTCA-TCCACAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
*
36229299 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
36229325 G
1 G
36229326 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:36229922 original size:11 final size:11
Alignment explanation
Indices: 36229906--36229930 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
36229896 CTTGGGGCAC
36229906 CATCACCGGAG
1 CATCACCGGAG
36229917 CATCACCGGAG
1 CATCACCGGAG
36229928 CAT
1 CAT
36229931 TGCTGGAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.36, G:0.24, T:0.12
Consensus pattern (11 bp):
CATCACCGGAG
Found at i:36230554 original size:26 final size:26
Alignment explanation
Indices: 36230518--36230570 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36230508 GTTGACTTAG
*
36230518 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
*
36230544 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
36230570 G
1 G
36230571 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:36231050 original size:26 final size:26
Alignment explanation
Indices: 36231021--36231070 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
36231011 GACTTAGGCA
* *
36231021 TACGGAGTTTATCCCCAGTCTAAGCC
1 TACGGAGTTCATCCCCAATCTAAGCC
*
36231047 TACGGAGTTCATTCCCAATCTAAG
1 TACGGAGTTCATCCCCAATCTAAG
36231071 ATCGGACCGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAATCTAAGCC
Found at i:36231562 original size:26 final size:26
Alignment explanation
Indices: 36231532--36231584 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36231522 GTTGACTTAG
*
36231532 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* *
36231558 GCATATGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
36231584 G
1 G
36231585 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:36231855 original size:513 final size:506
Alignment explanation
Indices: 36230478--36231891 Score: 1657
Period size: 500 Copynumber: 2.8 Consensus size: 506
36230468 CCTCTCTGGT
* *
36230478 CGACTGAGTGCCTGTATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
1 CGACTGAG-GCCCGTATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
** * * * **
36230543 AGCATAAGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGCTTACGGTAGCAGGATCGAT
65 AGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGAT
* * * * * ** *
36230608 AGCACGTAGGGGGGACCGAACCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCAC
130 AGCACGTAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTACCTCTACGGCCGGCTGAGCGC
* * * *
36230673 CCGCAGGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCG
195 CCGCACGCCCATTTCATGGGTTGGCTTAGGAATA-GGAGTTCATTCCATGTCTAAGCCCCAACCG
* * ** * * *
36230738 GACCGAGGGTTGTGGCAGAGGAACTGGCAGCATGTGGAAGAGGGCCAGGCCGATCCTCGGCTTAC
259 GATCGAGGGTTGTGGCAGAGGAAC-GGCAGCACGCAG-AGGGGGCCAGGCCGATCCCCGGCTTGC
* *
36230803 GCATTATGCCTCTCCAGT-CGGCTCAATGCCCGTACACTCATTTTGTGGGTTGGCTTAGGCATAC
322 GCATTATGCCTCTCCA-TCCGGCTCAGTGCCCGTACGCTCATTTTGTGGGTTGGCTTAGGCATAC
* *
36230867 GGAGTTCATTCCATGTCTAAGTCCCAGCCGGACCGAAGGTTGTGGCAGTAGGATCGATAGCGAGA
386 GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAGGTTGTGGCAGTAGGATCGATAGCGAGA
* * ** *
36230932 TGGGCTACACGTAGAGAGTGACTGGGCTGATCCTCGACTTGCACATTATGCCTCTC
451 TGAGCTACACGTAGAGAGGGACCAGGCTGATCCCCGACTTGCACATTATGCCTCTC
*
36230988 CGACT--GG--C-----CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTAA
1 CGACTGAGGCCCGTATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * * * *
36231044 GCCTACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGCGACAGCAAGATCGACA
66 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGATA
* * * *
36231109 GCACGTAAGGGGGACTGAGTCGATCCCTGGCTTGCGCATTCTACCTCTACGGCTGGCTGAGCGCC
131 GCACGTAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTACCTCTACGGCCGGCTGAGCGCC
* *
36231174 CGCACACCCATTTCATAGGTTGGCTTAGGAATAAGGAGTTCATTCCATGTCTAAGCCCCAACCGG
196 CGCACGCCCATTTCATGGGTTGGCTTAGGAAT-AGGAGTTCATTCCATGTCTAAGCCCCAACCGG
* * * *
36231239 ATCGAGGGTTGTGGCAGAGGGACCGGCAGCACGCAGAGGGGGGCCAGACCGATCCCTGGCTTGTG
260 ATCGAGGGTTGTGGCAGA-GGAACGGCAGCACGCAGA-GGGGGCCAGGCCGATCCCCGGCTTGCG
** * *
36231304 CATTATGCCTCTCCGGCTGGCTCAGTGCCCGTACGCTCATTTTGTGGGTTGGTTTAGGCATACGG
323 CATTATGCCTCTCCATCCGGCTCAGTGCCCGTACGCTCATTTTGTGGGTTGGCTTAGGCATACGG
* * * * * * * * * *
36231369 AGTTAATTCCATGTCTAAGCCCCAGCTAGACTGAGGGTTGTGGTAGTAGGATCGGTAGTGGGCTT
388 AGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAGGTTGTGGCAGTAGGATCGATAGCGAGATG
* **
36231434 AGC-AGCACGTAGAGGGGGACCAGGCTGATCCCC-AGCTTGTGCATTATGCCTCTC
453 AGCTA-CACGTAGAGAGGGACCAGGCTGATCCCCGA-CTTGCACATTATGCCTCTC
* *
36231488 CAGTCGGTTGAGCGCCCGTATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAG
1 C-GAC---TGAG-GCCCGTATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAG
* * *
36231553 TCTAAGCATATGGAGTTCATTCCCAGCCTAAGATCGGACCGGACCGAGGGTTGC-ACAGTAGGAT
61 TCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGAT
* * * * * *
36231617 CGATAGCACGCAGGGGGGACCGGGCCGATCCCTGGCCTGCGTATTCTACCTCTATGGCCGACTGA
126 CGATAGCACGTAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTACCTCTACGGCCGGCTGA
* * * *
36231682 GCGTCCGCACGCCCGTTTCATGGGTTGGCTTAGGGATAGGAAGTTCATTCCATGTGTAAGCCCCA
191 GCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGAATAGG-AGTTCATTCCATGTCTAAGCCCCA
* * * * *
36231747 ACCGGATCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGATCGGGCTGATCCCCGAC
255 ACCGGATCGAGGGTTGTGGCAG-AGGAACGGCAGCACGCAGAGGGGG-CCAGGCCGATCCCCGGC
* * * * ** * * * * *
36231812 TTGCACATTATGCCTTTTCATCCGGTTCAGCACCCGCACGCTCATTTCGTAGGTTGACTTATGCA
318 TTGCGCATTATGCCTCTCCATCCGGCTCAGTGCCCGTACGCTCATTTTGTGGGTTGGCTTAGGCA
36231877 TACGGAGTTCATTCC
383 TACGGAGTTCATTCC
36231892 CAGTGTAAGA
Statistics
Matches: 759, Mismatches: 122, Indels: 43
0.82 0.13 0.05
Matches are distributed among these distances:
499 3 0.00
500 409 0.54
501 7 0.01
504 1 0.00
506 1 0.00
507 2 0.00
508 1 0.00
509 1 0.00
510 5 0.01
512 8 0.01
513 230 0.30
514 91 0.12
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (506 bp):
CGACTGAGGCCCGTATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGATA
GCACGTAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTACCTCTACGGCCGGCTGAGCGCC
CGCACGCCCATTTCATGGGTTGGCTTAGGAATAGGAGTTCATTCCATGTCTAAGCCCCAACCGGA
TCGAGGGTTGTGGCAGAGGAACGGCAGCACGCAGAGGGGGCCAGGCCGATCCCCGGCTTGCGCAT
TATGCCTCTCCATCCGGCTCAGTGCCCGTACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCCCCAGCCAGACCGAAGGTTGTGGCAGTAGGATCGATAGCGAGATGAGC
TACACGTAGAGAGGGACCAGGCTGATCCCCGACTTGCACATTATGCCTCTC
Found at i:36232046 original size:157 final size:157
Alignment explanation
Indices: 36231558--36232048 Score: 508
Period size: 159 Copynumber: 3.1 Consensus size: 157
36231548 CCCAGTCTAA
* ** * *
36231558 GCATATGGAGTTCATTCCCAGCCTAAGATCGGACCGGACCGAGGGTTGC-ACAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGAACCGGACCGAGGGTTGCGACAGTAGGATCGACA
* * * * * *
36231622 GCACGCAGGGGGGACCGGGCCGATCCCTGGCCTGCGTATTCTACCTCTATGGCCGACTGAGCGTC
66 GCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTC-ACCTCTCTGGCCGACTGAGCGCC
* *
36231687 CGCACGCCCGTTTCATGGGTTGGCTTAG
130 CGCACGCTCATTTCATGGGTTGGCTTAG
* ** * * * * * *
36231715 GGATA-GGAAGTTCATT-CCATGTGTAAGCCCCAACCGGATCGAGGGTTGTGGCAGCAGGATCGG
1 GCATACGG-AGTTCATTCCCA-GTGTAAGATCGAACCGGACCGAGGGTTGCGACAGTAGGATCGA
* * * * ** *
36231778 CAGCACGCAGAGGGGGATCGGGCTGATCCCCGACTTGCACATT-ATGCCTTTTCAT--CCGGTTC
64 CAGCACGCAG-GGGGGACCGGGCTGATCCCCGGCTTGCGCATTCA--CC-TCTC-TGGCCGACTG
* * * * *
36231840 AGCACCCGCACGCTCATTTCGTAGGTTGACTTAT
124 AGCGCCCGCACGCTCATTTCATGGGTTGGCTTAG
* * *
36231874 GCATACGGAGTTCATTCCCAGTGTAAGATCGAATCAGACCGAGGGTTACGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGAACCGGACCGAGGGTTGCGACAGTAGGATCGACA
* * *
36231939 GCACGCAGGGGAGACCGGGTTGATCCCCGGCTTGTGCATTCACCTCTCTGGCCGACTGAGCGCCC
66 GCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCACCTCTCTGGCCGACTGAGCGCCC
36232004 GCACGCTCATTTCATGGGTTGGCTTAG
131 GCACGCTCATTTCATGGGTTGGCTTAG
36232031 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
36232049 ATGTCTAAGC
Statistics
Matches: 261, Mismatches: 60, Indels: 26
0.75 0.17 0.07
Matches are distributed among these distances:
155 1 0.00
156 8 0.03
157 87 0.33
158 45 0.17
159 112 0.43
160 7 0.03
161 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTGTAAGATCGAACCGGACCGAGGGTTGCGACAGTAGGATCGACA
GCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCACCTCTCTGGCCGACTGAGCGCCC
GCACGCTCATTTCATGGGTTGGCTTAG
Found at i:36233014 original size:26 final size:26
Alignment explanation
Indices: 36232978--36233030 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36232968 GTTGGCTTAG
*
36232978 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTGCCA-GTCTAA
36233004 GCATACAGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTGCCAGTCTAA
36233030 G
1 G
36233031 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTGCCAGTCTAA
Found at i:36233636 original size:955 final size:945
Alignment explanation
Indices: 36231797--36233676 Score: 2716
Period size: 955 Copynumber: 2.0 Consensus size: 945
36231787 GAGGGGGATC
* * * * * *
36231797 GGGCTGATCCCCGACTTGCACATTATGCCTTTTCATCCGGTTCAGCACCCGCACGCTCATTTCGT
1 GGGCTGATCCCCGACTTGCACATTACGCCTCTTCATCCGGCTCAGAACCCGCACACTCATTTCAT
*
36231862 AGGTTGACTTATGCATACGGAGTTCATTCCCAGTGTAAGATCGAATCAGACCGAGGGTTACGACA
66 AGGTTGACTTATGCATACGGAGTTCATTCCCAGTGTAAGATCGAATCAGACCAAGGGTTACGACA
* * * * ** *
36231927 GTAGGATCGACAGCACGCAGGGGAGACCGGGTTGATCCCCGGCTTGTGCATTCACCTCTCTGGCC
131 GCAGGATCGACAGCACGCAGGGGAGACCAGGTCGATCCCCGACTTGCACATTCACCTCTCCGGCC
* * *
36231992 GACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
196 GACTAAGCACCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* ** * * * *
36232057 GCATACGGAGTTCATTTTCAGTCGAAGATTTTGAGCCATGGTGCACATGCTGGGCTTGGGCATGT
261 GCATACAGAGTTCATTGCCAGTCGAAGATTTTGAGCCACGGTACACATGCTGGGCTCGAGCATGT
** * *
36232122 GCTGGTGTCACATTTTTTTCGCCCGGGGCACCATCGCCAGAGCATCATCGGAGAGCCTAACCGGC
326 GCTGGTACCACATTTTTTTCGCCCGAGGCACCATCGCCAGAGCATCACCGGAGAGCCTAACCGGC
* * * *
36232187 GATATTGGGGGTTCCGGCGATTAGTGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCG
391 GACATTGGGGGTTCCGACGATTAGGGGGGCCAGGGGGTGTGCGCACATGATGTGCAATGGGTGCG
36232252 GGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
456 GGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
* *
36232317 AAGTATTTCAGATTTTATAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
521 AAGCATTTCAGATTTTATAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
*
36232382 TTTCAAACGGTCACAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTGTTTTGTACATGCCAAC
586 TTTCAAACGGTCACAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTGTTTTGTACATGCCAAA
* *
36232447 AAAAATACAAGGATCACCTCTACCAATTTTGCGAACAAAACTCTTTCTAAAAAAATTTTAAAAAA
651 AAAAATACAAGGATCACCTCTACCAAATTTGCGAACAAAACACTTTCTAAAAAAATTTTAAAAAA
* * *
36232512 TCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAGAACGGGTCATCTTGAAACGAAACT
716 TCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCATCTTGAAACGAAACT
* *
36232577 TCACATGAAGGCTTAGGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTA
781 TCACATAAAGGCTTAGGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGCTA
*
36232642 GAAATATGAAGATGTGCTTGAACCCACCTACCACCCATTCGATCCTCGGCTTGCACATCCTGCCT
846 GAAATATGAAGATGTGCTTGAACCCACCTACCACCCATTCGATCCCCGGCTTGCACATCCTGCCT
36232707 CTCTGGTCAGCTGAGTGCCCGCACGCTCATTTCGT
911 CTCTGGTCAGCTGAGTGCCCGCACGCTCATTTCGT
* *
36232742 GGGCTGATCCCC-AGCTTGCACATTACGCCTCTTCATCTGGCTCAGAACCCGCACACTCGTTTCA
1 GGGCTGATCCCCGA-CTTGCACATTACGCCTCTTCATCCGGCTCAGAACCCGCACACTCATTTCA
* * * * * *
36232806 TGGGTTGACTTATGCATACGGAGTTCATTCCCAGTGTAAGATTGGATCGGACTAAGGGTTGC-AG
65 TAGGTTGACTTATGCATACGGAGTTCATTCCCAGTGTAAGATCGAATCAGACCAAGGGTTACGA-
* * * * *
36232870 TAGCAGGATCGATAGCATGCAGGGGGGGACCAGGTCGATCCCCGACTTGCACATTCTGCCTCTCC
129 CAGCAGGATCGACAGCACGCA-GGGGAGACCAGGTCGATCCCCGACTTGCACATTC-ACCTCTCC
* * *
36232935 GGCCGGCTAAGCACCCGCACACTCCTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
192 GGCCGACTAAGCACCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
*
36233000 CTAAGCATACAGAGTTCATTGCCAGTCTAAGATTTTGAGCCACGGTACACATGCTGGGCTCGAGC
257 CTAAGCATACAGAGTTCATTGCCAGTCGAAGATTTTGAGCCACGGTACACATGCTGGGCTCGAGC
* *
36233065 ATGTGCTGGTACCACATTTTTTTCG-GCTAGGCACCATCGTCGGAGCATCGTTGAAGCATCACCG
322 ATGTGCTGGTACCACATTTTTTTCGCCCGAGGCACCATCG-C----CA-----G-AGCATCACCG
* ** *
36233129 GAGAGCCTAACCGGC-AGCATTGTGGGTTTTGACGATT-GGGGGGCCGGGGGGTGTGCGCACATG
376 GAGAGCCTAACCGGCGA-CATTGGGGGTTCCGACGATTAGGGGGGCCAGGGGGTGTGCGCACATG
* *
36233192 ATGTGCAATGGGTGCTGGTACTTGGCCC-TAATATTGGCCCCCTATCCCTCATCAAACCTTAAGA
440 ATGTGCAATGGGTGCGGGTACTTGGCCCTTAA-ATTGGCCCCCTATCCCTCATCAAACCTCAAGA
* * * *
36233256 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTC
504 ACTCACACCCCCTTAAAAAGCATTTCAGATTTTATAGGTTTGCTCCCAGTAGCCATTAAAGTGTC
* *
36233321 TAAAATGGGGACACTTTTTTTAAACGGTCACAAAATCTTCTCCATTTTGAGTTTTTAGCTGAATT
569 TAAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATT
* * *
36233386 -TTTTGTGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACACTTTCT
634 GTTTTGTACATGCCAAAAAAAATACAAGGATCACCTCTACCAAATTTGCGAACAAAACACTTTCT
* * *
36233450 AAAAAATTTTTAAAAAATCCCAAATCGTAAAAAGTTTTC-AAAATCGTGAAAAATAGAAAACGGG
699 AAAAAAATTTTAAAAAATCCCAAACCGTAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGGG
* * ** * * *
36233514 TCGTGTTGCCATGAAACTTCACATAAAGGCTTAGGGGACCATTGTATGAATTTTCAAGCCATAAA
763 TCATCTTGAAACGAAACTTCACATAAAGGCTTAGGGGACCATTATATGAATTTACAAGCCATAAA
36233579 AATGGCATTGGCATAGCT-GAAATATGAAGATGTGCTTGAACCCACCTACCACCCATTCGATCCC
828 AATGGCATTGGCAT-GCTAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCATTCGATCCC
** *
36233643 CGGCTTGTGCATCCTGCCTCTCTGGTCGGCTGAG
892 CGGCTTGCACATCCTGCCTCTCTGGTCAGCTGAG
36233677 CGCTCATACG
Statistics
Matches: 826, Mismatches: 90, Indels: 28
0.88 0.10 0.03
Matches are distributed among these distances:
944 2 0.00
945 126 0.15
946 39 0.05
947 146 0.18
951 2 0.00
955 261 0.32
956 211 0.26
957 39 0.05
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (945 bp):
GGGCTGATCCCCGACTTGCACATTACGCCTCTTCATCCGGCTCAGAACCCGCACACTCATTTCAT
AGGTTGACTTATGCATACGGAGTTCATTCCCAGTGTAAGATCGAATCAGACCAAGGGTTACGACA
GCAGGATCGACAGCACGCAGGGGAGACCAGGTCGATCCCCGACTTGCACATTCACCTCTCCGGCC
GACTAAGCACCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCATACAGAGTTCATTGCCAGTCGAAGATTTTGAGCCACGGTACACATGCTGGGCTCGAGCATGT
GCTGGTACCACATTTTTTTCGCCCGAGGCACCATCGCCAGAGCATCACCGGAGAGCCTAACCGGC
GACATTGGGGGTTCCGACGATTAGGGGGGCCAGGGGGTGTGCGCACATGATGTGCAATGGGTGCG
GGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
AAGCATTTCAGATTTTATAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
TTTCAAACGGTCACAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTGTTTTGTACATGCCAAA
AAAAATACAAGGATCACCTCTACCAAATTTGCGAACAAAACACTTTCTAAAAAAATTTTAAAAAA
TCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCATCTTGAAACGAAACT
TCACATAAAGGCTTAGGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGCTA
GAAATATGAAGATGTGCTTGAACCCACCTACCACCCATTCGATCCCCGGCTTGCACATCCTGCCT
CTCTGGTCAGCTGAGTGCCCGCACGCTCATTTCGT
Found at i:36233738 original size:26 final size:26
Alignment explanation
Indices: 36233709--36233761 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36233699 GTTGACTTAG
*
36233709 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
36233735 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
36233761 G
1 G
36233762 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:36234106 original size:26 final size:26
Alignment explanation
Indices: 36234077--36234129 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36234067 GTTGACTTAG
36234077 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
36234103 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
36234129 G
1 G
36234130 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:36235331 original size:26 final size:26
Alignment explanation
Indices: 36235302--36235354 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36235292 GTTGACTTAG
* *
36235302 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCACTCTAA
*
36235328 GCATACAGAGTTCATTCCCACTCTAA
1 GCATACAGAGTTCATCCCCACTCTAA
36235354 G
1 G
36235355 ATCGGCTTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCACTCTAA
Found at i:36235616 original size:157 final size:159
Alignment explanation
Indices: 36235455--36235828 Score: 402
Period size: 158 Copynumber: 2.4 Consensus size: 159
36235445 CGGTTGAGCA
* * * *
36235455 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTGATTCCATGTCTAAGCCCCAG-C
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
* * * * *
36235519 CAGACCTAGGGTTGTGGCAAC-GGGCCAACAGCACACAGAG-GGGAC-AGGGCCAATCCCCGGCT
66 CAGACCGAAGGTTGCGGCAACAGGACCAACAGCACACAGAGAGGG-CTA-GACCAATCCCCGGCT
** *
36235581 TATGCATTATGCCTCTTTGACCGGCTCAACG
129 TACACATTATGCCTCTCTGACCGGCTCAACG
* * * * *
36235612 CCCGCACGCTCGTTTCGTGGGTTGACGTAGGCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGA
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGA
* * * * * * *
36235675 CCAGACCGAAGGTTGCGGTAGCAGGATCAATAGCACGCAGAGAGGGCTAGACCGATCCCTGGCTT
65 CCAGACCGAAGGTTGCGGCAACAGGACCAACAGCACACAGAGAGGGCTAGACCAATCCCCGGCTT
* * * * *
36235740 ACACTTTCTGCCTCTCTGGCCGGCTGAGCG
130 ACACATTATGCCTCTCTGACCGGCTCAACG
36235770 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CATTGTCTAAGCA
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA-TGTCTAAGCA
36235829 TACGGAGTTC
Statistics
Matches: 176, Mismatches: 33, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
156 5 0.03
157 63 0.36
158 103 0.59
159 5 0.03
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (159 bp):
CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
CAGACCGAAGGTTGCGGCAACAGGACCAACAGCACACAGAGAGGGCTAGACCAATCCCCGGCTTA
CACATTATGCCTCTCTGACCGGCTCAACG
Found at i:36235849 original size:26 final size:26
Alignment explanation
Indices: 36235800--36235850 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
36235790 GTTGGCTTAG
**
36235800 GCATACGGAGTTCATTCATTGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
36235826 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCACAGTCTA
36235851 GGATCAGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:36236033 original size:26 final size:26
Alignment explanation
Indices: 36235997--36236049 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36235987 GTTGGCTTAG
*
36235997 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTAATTCCCA-GTCTAA
36236023 GCATACAGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
36236049 G
1 G
36236050 ATTGAAGCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:36236635 original size:26 final size:26
Alignment explanation
Indices: 36236590--36236640 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
36236580 GTTGACTTAG
* *
36236590 GCATACGGAGTTTATCCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
36236616 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
36236641 TGATCAGACC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:36237102 original size:26 final size:26
Alignment explanation
Indices: 36237072--36237124 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36237062 GTTGACTTAG
*
36237072 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
36237098 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
36237124 G
1 G
36237125 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:36237223 original size:184 final size:183
Alignment explanation
Indices: 36236914--36237282 Score: 463
Period size: 184 Copynumber: 2.0 Consensus size: 183
36236904 GTTGACTTAG
* * * *
36236914 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGATTAAGGGTTACGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCAAGGGTTACGATAGCAGGATCGAAA
* ** * ** * **
36236979 GCACGTAGGGGGGACCTGGCCGATCCTTGGCTTGTGCATTATGCCTCTCTGGTCGACTGAGCGCC
66 GCACGCAGGGGGGACCAAGCCAATCCCCGGCTTGCGCATTATGCCTCTCTGACCGACTGAGCGCC
* * * * *
36237044 CGCATGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCC-TAGTCTAA
131 C-CACGCCCATTTCATGGGTTGACTTAGGCATAGGGAGTACATCCCAT-GTCTAA
* * * *
36237098 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCGATAGCAGGATCGAAA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCAAGGGTTACGATAGCAGGATCGAAA
* *
36237163 GCACGCAGGGGGGACCAAGCCAATCCCCGGCTTGCGCATTCTGCCTCT-TCGACCGACTGAGTGC
66 GCACGCAGGGGGGACCAAGCCAATCCCCGGCTTGCGCATTATGCCTCTCT-GACCGACTGAGCGC
* *
36237227 CCCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTACATTCCATGTCTAA
130 CCCACGCCCATTTCATGGGTTGACTTAGGCATAGGGAGTACATCCCATGTCTAA
36237281 GC
1 GC
36237283 CCTAGTCGGA
Statistics
Matches: 157, Mismatches: 26, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
183 46 0.29
184 111 0.71
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCAAGGGTTACGATAGCAGGATCGAAA
GCACGCAGGGGGGACCAAGCCAATCCCCGGCTTGCGCATTATGCCTCTCTGACCGACTGAGCGCC
CCACGCCCATTTCATGGGTTGACTTAGGCATAGGGAGTACATCCCATGTCTAA
Found at i:36237531 original size:159 final size:159
Alignment explanation
Indices: 36237098--36237619 Score: 488
Period size: 159 Copynumber: 3.3 Consensus size: 159
36237088 CCTAGTCTAA
*
36237098 GCATACGGAGTTCATTCCTA-GTCTAAGATCAGACCGGATCGAGGGTTGCGATAGCAGGATCGAA
1 GCATACGGAGTTCATTCCTATGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGAA
* * ** * * * * *
36237162 AGCACGCA-GGGGGGACCAAGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGACTGAGTG
66 AGCACGCAGGGGGGGACCAGGCCGATCCTTGGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGCG
* * * *
36237226 CCCCACGCCCATTTCATGGGTTGGCTTAG
131 CCGCACACCTATTTCGTGGGTTGGCTTAG
* * ** * * * *
36237255 GCATAGGGAGTACATTCC-ATGTCTAAGCCCTAG-TCGGA-CTGAGGGTTGTGGCAGCGGGATCG
1 GCATACGGAGTTCATTCCTATGTCTAAGATC-AGACCGGATC-GAGGGTTGCGGTAGCAGGATC-
* * ** * * * *
36237317 GCAA-CACGCAGAGAAGGACCAGGCCGATCCTTGACTTGCGCATTATGCCACTCCGATCGGCTCA
63 GAAAGCACGCAGGGGGGGACCAGGCCGATCCTTGGCTTGCGCATTCTGCCTCTCCGATCGGCTAA
* *
36237381 GCGCCTGCATACCTATTTCGTGGGTTGACTTAG
128 GCGCC-GCACACCTATTTCGTGGGTTGGCTTAG
* * *
36237414 GCATACGGAGTTCATTCCTA-GTTTGAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGAT
1 GCATACGGAGTTCATTCCTATGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGAA
** * * *
36237478 AGCACATAGGGGGGGA-CAGGGCCGATCCTTGGCTTACGCATTCTGCTTGTCCGATCGGCTAAGC
66 AGCACGCAGGGGGGGACCA-GGCCGATCCTTGGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGC
* *
36237542 GACCGCACA-CTCATTTCGTAGGCTGGCTTAG
130 G-CCGCACACCT-ATTTCGTGGGTTGGCTTAG
* * * * *
36237573 GTATACAGAGTTCATT-ATATGTCTAAGATCAGACTGGACCGAGGGTT
1 GCATACGGAGTTCATTCCTATGTCTAAGATCAGACCGGATCGAGGGTT
36237620 ACGATAGTAA
Statistics
Matches: 285, Mismatches: 66, Indels: 26
0.76 0.18 0.07
Matches are distributed among these distances:
156 2 0.01
157 51 0.18
158 58 0.20
159 170 0.60
160 4 0.01
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCTATGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGAA
AGCACGCAGGGGGGGACCAGGCCGATCCTTGGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGCG
CCGCACACCTATTTCGTGGGTTGGCTTAG
Found at i:36237794 original size:26 final size:26
Alignment explanation
Indices: 36237743--36237795 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
36237733 GTTGGCTTAG
*
36237743 GCATACGGAGTACATTCCATGTCTAA
1 GCATACGGAGTACATTCCATGACTAA
*
36237769 GCATACGGAGTTCATTCCCA-GACTAA
1 GCATACGGAGTACATT-CCATGACTAA
36237795 G
1 G
36237796 ATTATAACGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTACATTCCATGACTAA
Found at i:36238649 original size:26 final size:26
Alignment explanation
Indices: 36238612--36238664 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36238602 GTTGGCTTAG
*
36238612 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
36238638 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
36238664 G
1 G
36238665 GTTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:36239362 original size:26 final size:26
Alignment explanation
Indices: 36239326--36239376 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
36239316 GACTTAGGCA
*
36239326 TATGGAGTTCATCCCCAGTCTAAGTG
1 TATGAAGTTCATCCCCAGTCTAAGTG
* *
36239352 TATGAAGTTCATTCCTAGTCTAAGT
1 TATGAAGTTCATCCCCAGTCTAAGT
36239377 TCACCGCTCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (26 bp):
TATGAAGTTCATCCCCAGTCTAAGTG
Found at i:36240116 original size:26 final size:25
Alignment explanation
Indices: 36240086--36240137 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
36240076 GTTGGGTTAG
36240086 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
36240112 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
36240137 G
1 G
36240138 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:36240334 original size:26 final size:26
Alignment explanation
Indices: 36240282--36240334 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
36240272 GTTGGTTTAG
* *
36240282 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACGGAGTTCATTCCATATCTAA
36240308 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
36240334 G
1 G
36240335 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:36241143 original size:157 final size:158
Alignment explanation
Indices: 36240947--36241503 Score: 396
Period size: 157 Copynumber: 3.5 Consensus size: 158
36240937 TGCACGCTCG
* * * * *
36240947 TTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGA-ACCGAGGGT
1 TTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGAGACCGAGGGT
** * * * * * * * *
36241011 TGTGGTAGCAGGATTGACAACACGTAGAGGGGATCGGGTCGATCCCC-AGCTTGTGTATTCTTCC
65 TACGGTAGCAAGATCGACAACACGCAGAGGGGACCGGGCCGATCCCCTA-CTTGCGCATTCTGCC
*
36241075 TCTCTGGTCGGTTGAGCACCCACACC-CTCA
129 TCTCTGGACGGTTGAGCACCCACACCTC-CA
* * *
36241105 TTTCGT-GGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCAGACTAGACCGAGGGTT
1 TTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGAGACCGAGGGTT
** * * *
36241169 ACGGTAGCAAGATCGGTAGCACGCAGGGGGGACCGGGCCGATCCCCTACTTGCGCATTCTGGCTC
66 ACGGTAGCAAGATCGACAACACGCAGAGGGGACCGGGCCGATCCCCTACTTGCGCATTCTGCCTC
* * *
36241234 TCTGGACGGTTGAGCGCCCGCACGTCCA
131 TCTGGACGGTTGAGCACCCACACCTCCA
* * * ** *
36241262 TTTTGTGGGTTGGCTTAAGCATAGGGAGTTTATT-CCATGTCTAAGCCCCA-ATCGA-ATCGAGG
1 TTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGA-CGAGACCGAGG
** * ** ** * * * * * *
36241324 GTTGTGATAGCGGGATCGGTAGCAAGCAGAGGGGGACCAGGCCGATCCTCGACTTGCGCATTATG
63 GTTACGGTAGCAAGATCGACAACACGCAGA-GGGGACCGGGCCGATCCCCTACTTGCGCATTCTG
* * * * * **
36241389 CCTCT-TCGGTCGGTTCAGCGCCCGCATGCT-TG
127 CCTCTCT-GGACGGTTGAGCACCCACA-CCTCCA
** * * *
36241421 TTTAATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTGTAAGATCAGATC-AGACCGAGGGT
1 TTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGAGACCGAGGGT
** * *
36241485 TGTGGTAGTAGGATCGACA
65 TACGGTAGCAAGATCGACA
36241504 GCGCGCATGA
Statistics
Matches: 319, Mismatches: 67, Indels: 25
0.78 0.16 0.06
Matches are distributed among these distances:
156 2 0.01
157 127 0.40
158 72 0.23
159 114 0.36
160 4 0.01
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.26
Consensus pattern (158 bp):
TTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGAGACCGAGGGTT
ACGGTAGCAAGATCGACAACACGCAGAGGGGACCGGGCCGATCCCCTACTTGCGCATTCTGCCTC
TCTGGACGGTTGAGCACCCACACCTCCA
Found at i:36241345 original size:158 final size:157
Alignment explanation
Indices: 36240612--36241606 Score: 563
Period size: 159 Copynumber: 6.4 Consensus size: 157
36240602 TATGGCCGGC
* *
36240612 TGAGTGCCCGCACGAT-CATTTTGTGGGTTGTCTTAGGCATACGGAGTTCATTCCCAGTCTAA-A
1 TGAGCGCCCGCACG-TCCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGA
* * * * * * * *
36240675 ATCAGATCGAATCGAGGGTTGTAGCAGCAGGATTGGCAGCACGCAGGAGGGATCGGGCTGATCCT
64 ACCA-ATCGAATCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCC
* * * ** **
36240740 CGACTTGCACATTCTACTTCT-TCGACCGAC
128 CGACTTGCGCATTCTGCCTCTCT-GGTCGGT
* * * * *
36240770 TGAGTGCCTGCACGTCCGTTTCT-TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
1 TGAGCGCCCGCACGTCCATTT-TGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGA
* * * * * * * * * *
36240834 CCCAACTGGACT-GAGCGTTGTGGCAGCAGGATCGACAGCATGCAGAAGGGGAGCGGGCTGATCC
64 ACCAA-TCGAATCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAG-GGGGGACCGGGCCGATCC
** * * * * *
36240898 TTGGCTTGTGCATTATGCCTCT-TCGGTTGGC
127 CCGACTTGCGCATTCTGCCTCTCT-GGTCGGT
* * * ** * * *
36240929 TCAGCGCCTGCACG-CTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTGTAAGA
1 TGAGCGCCCGCACGTC-CATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGA
* ** * * * * * * * * *
36240993 TCGGACCGAACCGAGGGTTGTGGTAGCAGGATTGACAACACGTAGAGGGGATCGGGTCGATCCCC
64 ACCAATCGAATCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCC
* * *
36241058 -AGCTTGTGTATTCTTCCTCTCTGGTCGGT
129 GA-CTTGCGCATTCTGCCTCTCTGGTCGGT
* * * *
36241087 TGAGCACCCACAC-CCTCATTTCGT-GGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAG-
1 TGAGCGCCCGCACGTC-CATTTTGTGGGTTGGCTTAGGCATACGGAGTTCA-TTCCAGTCTAAGA
* * * ** * *
36241149 ATCAGA-CTAGACCGAGGGTTACGGTAGCAAGATCGGTAGCACGCAGGGGGGACCGGGCCGATCC
64 ACCA-ATCGA-ATCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCC
* * *
36241213 CCTACTTGCGCATTCTGGCTCTCTGGACGGT
127 CCGACTTGCGCATTCTGCCTCTCTGGTCGGT
* * * **
36241244 TGAGCGCCCGCACGTCCATTTTGTGGGTTGGCTTAAGCATAGGGAGTTTATTCCATGTCTAAGCC
1 TGAGCGCCCGCACGTCCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGAA
* * * * * *
36241309 CCAATCGAATCGAGGGTTGTGATAGCGGGATCGGTAGCAAGCAGAGGGGGACCAGGCCGATCCTC
65 CCAATCGAATCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAG-GGGGGACCGGGCCGATCCCC
*
36241374 GACTTGCGCATTATGCCTCT-TCGGTCGGT
129 GACTTGCGCATTCTGCCTCTCT-GGTCGGT
* * * * * * *
36241403 TCAGCGCCCGCA--TGCTTGTTTAATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTGTAAG
1 TGAGCGCCCGCACGTCCAT-TTT-GTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAG
* * * * * *
36241466 -ATCAGATC-AGACCGAGGGTTGTGGTAGTAGGATCGACAGCGCGCA----TGA---GG--GATC
63 AACCA-ATCGA-ATCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATC
* * *
36241520 CCC-AGCTTGTGCATTCTGCCTCT-TCGGCCGGC
126 CCCGA-CTTGCGCATTCTGCCTCTCT-GGTCGGT
* ** * *
36241552 TGAGCGCCCACACG-CTCATTTCATTGGTTGGCTTAGGCATACAGAGTTCATTCCA
1 TGAGCGCCCGCACGTC-CATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
36241607 TGTATAAGCA
Statistics
Matches: 657, Mismatches: 147, Indels: 76
0.75 0.17 0.09
Matches are distributed among these distances:
148 4 0.01
149 65 0.10
150 2 0.00
151 4 0.01
154 2 0.00
156 2 0.00
157 130 0.20
158 204 0.31
159 238 0.36
160 6 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.26
Consensus pattern (157 bp):
TGAGCGCCCGCACGTCCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGAAC
CAATCGAATCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGA
CTTGCGCATTCTGCCTCTCTGGTCGGT
Found at i:36242535 original size:26 final size:26
Alignment explanation
Indices: 36242486--36242536 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
36242476 GGACTTAGGA
*
36242486 ATACGGAGTTCATCCCTAGTCTAAGC
1 ATACGGAGTTCATCCCTAGACTAAGC
36242512 ATACGGAGTTCATTCCC-AGACTAAG
1 ATACGGAGTTCA-TCCCTAGACTAAG
36242537 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCTAGACTAAGC
Found at i:36243320 original size:26 final size:26
Alignment explanation
Indices: 36243284--36243335 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36243274 GTTGGCTTAG
36243284 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
36243310 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
36243336 CATTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:36244033 original size:26 final size:26
Alignment explanation
Indices: 36243997--36244046 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
36243987 GACTTAGGCG
36243997 TACGGAGTTCATCCCCAGTCTAAGCA
1 TACGGAGTTCATCCCCAGTCTAAGCA
* *
36244023 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
36244047 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCA
Found at i:36244627 original size:159 final size:158
Alignment explanation
Indices: 36244169--36244921 Score: 492
Period size: 157 Copynumber: 4.8 Consensus size: 158
36244159 GTTTCATCGA
* ** * *
36244169 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCGAACTGTGGGTTGTGGCAAC
1 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGA-CGGACTGAAGGTTGTGGTAGC
* * * * * * * * * * ** * *
36244233 GGGACCGATAGCATGCAAATGGGGA-CTGGGCCGATCCTCGGCTTGCACATTATGCCCCTTTGGC
65 AGGACTGACAGCACGCAGAGGGGGATC-GAGTCGATCCCCGACTTGTGCATTATGCCTC-TTAGC
* * ** ** *
36244297 CGGCTCAGCGCCTACACGCTTGTTTTGTGGG
128 CGGTTCAACGCCCGCACGCCCGTTTCGTGGG
** * * * * ** * * *
36244328 TTTACTTAGGCGTACGAAGTTCATCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTATGGTAGC
1 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGA-CGGACTGAAGGTTGTGGTAGC
* * * * * * * *
36244391 AGGA-TCGACAGGACGTAG-GGGGGACCGAGCCGATCCCC-AGCTTGCGCATTCTGCCTCCTCGA
65 AGGACT-GACAGCACGCAGAGGGGGATCGAGTCGATCCCCGA-CTTGTGCATTATGCCTCTTAG-
***
36244453 CCAACT-AAGCGCCCGCACGCCCGTTTCGTGGG
127 CCGGTTCAA-CGCCCGCACGCCCGTTTCGTGGG
* *
36244485 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAAGGTTGAGGTAGCA
1 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACGGACTGAAGGTTGTGGTAGCA
*
36244550 GGACTGACAGCACGCAGAGGGGGATCGAGTCGATCCCCGACTTGTGCGTTATGCCTCTTCAGCCG
66 GGACTGACAGCACGCAGAGGGGGATCGAGTCGATCCCCGACTTGTGCATTATGCCTCTT-AGCCG
* * *
36244615 GTTCAACGCCCGCACACTCGTTTCATGGG
130 GTTCAACGCCCGCACGCCCGTTTCGTGGG
* * ** * ** * * *
36244644 TTGACTTATGCATACAGAGTTTATTCCCA-GTCTAAG-ATCAGACTGAATCGAGGGTTGTGGTAG
1 TTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGACGGACT-GAAGGTTGTGGTAG
* * * * * * * *
36244707 CAGGA-TCGACAACACGCAG-GGGGGATCGAGCCGATCCTCGACTTTTACATTCTGCCTCTTGGG
64 CAGGACT-GACAGCACGCAGAGGGGGATCGAGTCGATCCCCGACTTGTGCATTATGCCTCTTAGC
* * *
36244770 CGGTTGAGCACCCGCACGCCCGTTTCGTGGG
128 CGGTTCAACGCCCGCACGCCCGTTTCGTGGG
* * * *
36244801 TTGGCTTAGGCTTAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACTG-AGGTTTGTGGCAGC
1 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACGGACTGAAGG-TTGTGGTAGC
** * * * * *
36244865 AGGACCAAC-GACACGTAGAGGGGGACCGGGTCGGTCCCC-AGCTTGCGCATTATGCCT
65 AGGACTGACAG-CACGCAGAGGGGGATCGAGTCGATCCCCGA-CTTGTGCATTATGCCT
36244922 TTTCGACCGA
Statistics
Matches: 451, Mismatches: 120, Indels: 47
0.73 0.19 0.08
Matches are distributed among these distances:
156 8 0.02
157 150 0.33
158 149 0.33
159 137 0.30
160 7 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACGGACTGAAGGTTGTGGTAGCA
GGACTGACAGCACGCAGAGGGGGATCGAGTCGATCCCCGACTTGTGCATTATGCCTCTTAGCCGG
TTCAACGCCCGCACGCCCGTTTCGTGGG
Found at i:36244805 original size:316 final size:311
Alignment explanation
Indices: 36244020--36245129 Score: 1105
Period size: 316 Copynumber: 3.5 Consensus size: 311
36244010 CCCAGTCTAA
* * *
36244020 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * *
36244085 GCACGTAGGGGGGACCAGACCAATCCCTGACTTGTGGAGTCTGCCTCTCCGGTCGGCTAAGCGCC
66 GCACGCAGGGGGGACGAG-CCGATCCC-GACTTGTGCATTCTGCCTCT-CGGCCGGCTAAGCGCC
* * * * * * * *
36244150 CACTCACCCGTTTCATCGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGA
128 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* * * * * * * * * * *
36244215 ACTGTGGGTTGTGGCAACGGGACCGATAGCATGCAAATGGGGACTGGGCCGATCCTCGGCTTGCA
193 ACTG-AGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGAC-GGGTCGATCCCCGACTTGCG
* * ** * * * *
36244280 CATTATGCCCCTTTGGCCGGCTCAGCGCCTACACGCTTGTTTTGTGGGTTTACTTAG
256 CATTATGCCTC-TTCGCCGGCTCAGCGCCCGCACACTCGTTTTGTGGGTTGACTTAT
* * * *
36244337 GCGTACGAAGTTCA-TCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * **
36244401 GGACGTAGGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCCTCGACCAACTAAGCGCC
66 GCACGCAGGGGGGA-CGAGCCGATCCCGA-CTTGTGCATTCTGCCT-CTCGGCCGGCTAAGCGCC
*
36244466 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
128 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* * * * *
36244531 ACTGAAGGTTGAGGTAGCAGGACTGACAGCACGCAGAGGGGGATCGAGTCGATCCCCGACTTGTG
193 ACTG-AGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGA-CGGGTCGATCCCCGACTTGCG
* * * **
36244596 CGTTATGCCTCTTCAGCCGGTTCAACGCCCGCACACTCGTTTCATGGGTTGACTTAT
256 CATTATGCCTCTTC-GCCGGCTCAGCGCCCGCACACTCGTTTTGTGGGTTGACTTAT
* * * * * *
36244653 GCATACAGAGTTTATTCCCAGTCTAAGATCAGACTGAATCGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * * *
36244718 ACACGCAGGGGGGATCGAGCCGATCCTCGACTTTTACATTCTGCCTCTTGGGCGGTTGAGCACCC
66 GCACGCAGGGGGGA-CGAGCCGATCC-CGACTTGTGCATTCTGCCTCTCGGCCGGCTAAGCGCCC
* *
36244783 GCACGCCCGTTTCGTGGGTTGGCTTAGGCTTAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGA
129 GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
* * *
36244848 CTGAGGTTTGTGGCAGCAGGACCAAC-GACACGTAGAGGGGGACCGGGTCGGTCCCC-AGCTTGC
194 CTGAGG-TTGTGGCAGCAGGACCGACAG-CACGCAGAGGGGGA-CGGGTCGATCCCCGA-CTTGC
* * * * *
36244911 GCATTATGCCTTTTCGACCGACTCAGTGCTCGTACACTCGTTTTGTGGGTTGACTTAT
255 GCATTATGCCTCTTCG-CCGGCTCAGCGCCCGCACACTCGTTTTGTGGGTTGACTTAT
* * * *
36244969 GCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * * *
36245034 GCACGCA--GGGTACCAGGTCGATCCCTGACTTGCGCATTCTACCTCTTCAGTCGGCTAAGCACC
66 GCACGCAGGGGGGACGA-GCCGATCCC-GACTTGTGCATTCTGCCTC-TCGGCCGGCTAAGCGCC
* * * *
36245097 CGCACACTCGTTTCATGGGTTGACTTAGGCATA
128 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
36245130 CAGAGCTCAT
Statistics
Matches: 652, Mismatches: 127, Indels: 30
0.81 0.16 0.04
Matches are distributed among these distances:
313 3 0.00
314 26 0.04
315 49 0.08
316 473 0.73
317 99 0.15
318 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (311 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGACGAGCCGATCCCGACTTGTGCATTCTGCCTCTCGGCCGGCTAAGCGCCCGC
ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACT
GAGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACGGGTCGATCCCCGACTTGCGCATTA
TGCCTCTTCGCCGGCTCAGCGCCCGCACACTCGTTTTGTGGGTTGACTTAT
Found at i:36245006 original size:159 final size:158
Alignment explanation
Indices: 36244020--36245151 Score: 718
Period size: 159 Copynumber: 7.2 Consensus size: 158
36244010 CCCAGTCTAA
* * * * * *
36244020 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGACCGACA
* * * * * * * * ** * *
36244085 GCACGTAGGGGGGACC-AGACCAATCCCTGACTTGTGGAGTCTGCCTCTCCGGTCGGCTAAGCGC
66 GCACGCAGGGGGGACCGAG-CCGATCCCCGACTTGCGCATTATGCCTCTTCGACCGACTCAGCGC
* * * * * *
36244149 CCACTCACCCGTTTCATCGATTGGCTTAG
130 CCGCACACCCGTTTCGTGGGTTGACTTAG
* ** * * * * *
36244178 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGAACTGTGGGTTGTGGCAACGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGTGGTAGCAGGACCGA
* * ** * * * * * * * * *
36244241 TAGCATGCAAATGGGGACTGGGCCGATCCTCGGCTTGCACATTATGCCCCTTTGGCCGGCTCAGC
64 CAGCACGC-AGGGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTTCGACCGACTCAGC
** * ** * *
36244306 GCCTACACGCTTGTTTTGTGGGTTTACTTAG
128 GCCCGCACACCCGTTTCGTGGGTTGACTTAG
* * * * *
36244337 GCGTACGAAGTTCA-TCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGACCGACA
* * * * * *
36244401 GGACGTAGGGGGGACCGAGCCGATCCCC-AGCTTGCGCATTCTGCCTCCTCGACCAACTAAGCGC
66 GCACGCAGGGGGGACCGAGCCGATCCCCGA-CTTGCGCATTATGCCTCTTCGACCGACTCAGCGC
* *
36244465 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CCGCACACCCGTTTCGTGGGTTGACTTAG
* ** * * * *
36244494 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACTGAAGGTTGAGGTAGCAGGACTGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGTGGTAGCAGGACCGA
* * * * ** *
36244557 CAGCACGCAGAGGGGGATCGAGTCGATCCCCGACTTGTGCGTTATGCCTCTTC-AGCCGGTTCAA
64 CAGCACGCAG-GGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTTCGA-CCGACTCAG
* * *
36244621 CGCCCGCACACTCGTTTCATGGGTTGACTTAT
127 CGCCCGCACACCCGTTTCGTGGGTTGACTTAG
* * * * *
36244653 GCATACAGAGTTTATTCCCAGTCTAAGATCAGA-CTGAATCGAGGGTTGTGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGTGGTAGCAGGACCGAC
* * * *** * ** ** * *
36244717 AACACGCAGGGGGGATCGAGCCGATCCTCGACTTTTACATTCTGCCTCTT-GGGCGGTTGAGCAC
65 AGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTTCGACCGACTCAGCGC
* *
36244781 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CCGCACACCCGTTTCGTGGGTTGACTTAG
* * ** * * *
36244810 GCTTAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CCGGACTGAGGTTTGTGGCAGCAGGACCAA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCGGACTGAGGGTTGTGGTAGCAGGACCGA
* * * * *
36244873 C-GACACGTAGAGGGGGACCGGGTCGGTCCCC-AGCTTGCGCATTATGCCTTTTCGACCGACTCA
64 CAG-CACGCAG-GGGGGACCGAGCCGATCCCCGA-CTTGCGCATTATGCCTCTTCGACCGACTCA
* * * * * *
36244936 GTGCTCGTACACTCGTTTTGTGGGTTGACTTAT
126 GCGCCCGCACACCCGTTTCGTGGGTTGACTTAG
* * ** *
36244969 GCATACGGAGTTTATTCCCAGTCTAAGATCAGACCGGA-TCGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGTGGTAGCAGGACCGAC
* * * * * * * *
36245033 AGCACGCA--GGGTACC-AGGTCGATCCCTGACTTGCGCATTCTACCTCTTC-AGTCGGCTAAGC
65 AGCACGCAGGGGGGACCGA-GCCGATCCCCGACTTGCGCATTATGCCTCTTCGA-CCGACTCAGC
* * *
36245094 ACCCGCACACTCGTTTCATGGGTTGACTTAG
128 GCCCGCACACCCGTTTCGTGGGTTGACTTAG
* * *
36245125 GCATACAGAGCTCATCCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
36245152 CATATGGAGT
Statistics
Matches: 732, Mismatches: 211, Indels: 64
0.73 0.21 0.06
Matches are distributed among these distances:
155 1 0.00
156 88 0.12
157 162 0.22
158 205 0.28
159 267 0.36
160 9 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGACCGACA
GCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTTCGACCGACTCAGCGCC
CGCACACCCGTTTCGTGGGTTGACTTAG
Found at i:36245629 original size:511 final size:498
Alignment explanation
Indices: 36244660--36245640 Score: 1117
Period size: 511 Copynumber: 1.9 Consensus size: 498
36244650 TATGCATACA
* * * * **
36244660 GAGTTTATTCCCAGTCTAAGATCAGACTGAATCGAGGGTTGTGGTAGCAGGATCGACAACACGCA
1 GAGTTCATTCCCAGACTAAGATCAGACCGAATCGAGGGTTGCGCCAGCAGGATCGACAACACGCA
* * ** * * *
36244725 GGGGGGATCGAGCCGATCCTCGACTTTTACATTCTGCCTCTTGGGCGGTTGAGCACCCGCACGCC
66 GGGGGGACCGAGCCGAACCTCGACTTACACATTATGCCTCTTGGCCGGCTGAGCACCCGCACGCC
* ** * *
36244790 CGTTTCGTGGGTTGGCTTAGGCTTAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACTGAGGT
131 CGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGT
* * *
36244855 TTGTGGCAGCAGGACCAACGACACGTAGAGGGGGACCGGGTCGGTCCCCAGCTTGCGCATTATGC
196 TTGTGGCAGCAGGACCAACGACACGCAAAGGGGGACCGGGTCGATCCCCAGCTTGCGCATTATGC
* * * * * ** * * * *
36244920 CTTTTCGACCGACTCAGTGCTCGTACACTCGTTTTGTGGGTTGACTTATGCATACGGAGTTTATT
261 CTCTTCGACCGACTCAGCGCTAGCACACTCATTTCATGGGATGACTTAGGCATACGGAGTTCATC
* * *
36244985 CCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGTACCAG
326 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGAGACAGCAGGATCGACAGCACGCAGGGGACCAG
* * * * * * *
36245050 GTCGATCCCTGACTTGCGCATTCTACCTCTTCAGTCGGCTAAGCACCCGCACACTCGTTTCATGG
391 GCCGATCCCCGACTTACGCATTCTACCTCTCCAGCCGGCTAAGCACCCGCACACCCATTTCATGG
36245115 GTTGACTTAGGCATACAGAGCTCATCCCCAGTCTAAGCATATG
456 GTTGACTTAGGCATACAGAGCTCATCCCCAGTCTAAGCATATG
* * *
36245158 GAGTTCATTCCCAGACTAAGATCAGACCGGATCGAGGGTTGCGCCATCAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGACTAAGATCAGACCGAATCGAGGGTTGCGCCAGCAGGATCGACAACACGCA
* * *
36245223 GGGGGGACCGGGCTGAACCTCGACTTACGCATTATGCCTCTCTGGCCGGCTGAGCACCCGCACGC
66 GGGGGGACCGAGCCGAACCTCGACTTACACATTATGCCTCT-TGGCCGGCTGAGCACCCGCACGC
* *
36245288 TCGTTTCGAT-GGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGGATTGAA
130 CCGTTTCG-TGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGGACTG-A
* * *
36245352 GG-TTGTGGTAGCAAGACTGACAGCAGGATCGACAGCATGCAAAGGGGGACCGGGTTGATCCCCG
193 GGTTTGTGGCAGC-AG---GAC--CA--A-CGACA-C--GCAAAGGGGGACCGGGTCGATCCCCA
* * *
36245416 GCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCGC-AGCACACTCATTTCATGGGATGACTTAGG
246 GCTTGCGCATTATGCCTCTTCGACCGACTCAGCGCTAGCACACTCATTTCATGGGATGACTTAGG
* * * * *
36245480 TATACGGAGTTCATCCCCAGTTTAAGATCAGACTGGACCGAGGGTTGTAG-TAGCAGGATCGGCA
311 CATACGGAGTTCATCCCCAGTCTAAGATCAGACCGGACCGAGGGTTG-AGACAGCAGGATCGACA
* * * * * *
36245544 GCATGCAGGGGGCTCGGGCCGATCCCCGATTTACGCATTCTACCTCTCC-GACCGGCTGAGCGCC
375 GCACGCAGGGGAC-CAGGCCGATCCCCGACTTACGCATTCTACCTCTCCAG-CCGGCTAAGCACC
* ** * *
36245608 CGCACGCCCATTTTGTGGGTTGGCTTAGTCATA
438 CGCACACCCATTTCATGGGTTGACTTAGGCATA
36245641 GGGAGTTCAT
Statistics
Matches: 393, Mismatches: 72, Indels: 23
0.81 0.15 0.05
Matches are distributed among these distances:
498 89 0.23
499 83 0.21
500 6 0.02
503 3 0.01
505 2 0.01
507 1 0.00
508 5 0.01
509 1 0.00
510 86 0.22
511 117 0.30
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (498 bp):
GAGTTCATTCCCAGACTAAGATCAGACCGAATCGAGGGTTGCGCCAGCAGGATCGACAACACGCA
GGGGGGACCGAGCCGAACCTCGACTTACACATTATGCCTCTTGGCCGGCTGAGCACCCGCACGCC
CGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGT
TTGTGGCAGCAGGACCAACGACACGCAAAGGGGGACCGGGTCGATCCCCAGCTTGCGCATTATGC
CTCTTCGACCGACTCAGCGCTAGCACACTCATTTCATGGGATGACTTAGGCATACGGAGTTCATC
CCCAGTCTAAGATCAGACCGGACCGAGGGTTGAGACAGCAGGATCGACAGCACGCAGGGGACCAG
GCCGATCCCCGACTTACGCATTCTACCTCTCCAGCCGGCTAAGCACCCGCACACCCATTTCATGG
GTTGACTTAGGCATACAGAGCTCATCCCCAGTCTAAGCATATG
Found at i:36245973 original size:26 final size:26
Alignment explanation
Indices: 36245943--36245995 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
36245933 GTTGGCTTAG
36245943 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
36245969 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
36245995 G
1 G
36245996 ACTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:36250254 original size:26 final size:26
Alignment explanation
Indices: 36250220--36250270 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
36250210 TGACTTAGAG
*
36250220 ATACAGAGTTCATCCCCAGTCTAAGC
1 ATACAGAGTTCATCCCCAATCTAAGC
* *
36250246 ATACGGAGTTCATTCCCAATCTAAG
1 ATACAGAGTTCATCCCCAATCTAAG
36250271 ATCAGACTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAATCTAAGC
Found at i:36250621 original size:26 final size:26
Alignment explanation
Indices: 36250585--36250637 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36250575 GTTGACTTAG
36250585 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
36250611 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
36250637 G
1 G
36250638 GTCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:36250724 original size:184 final size:183
Alignment explanation
Indices: 36250145--36250796 Score: 504
Period size: 184 Copynumber: 3.6 Consensus size: 183
36250135 ACCACCCGTT
* * * * * *
36250145 CGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGACTGAGCGCCTGCATGCTCGTTTCATGGGT
1 CGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGT
* * * *
36250210 TGACTTAGAG-ATACAGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAATCTAAGAT
66 TGACTTAG-GCATACGGAGTTCATCCCTATGTCTAAGCATA-GGAGTTCATTCCCAGTCTAAGGT
* * * *
36250273 CAGACTGAACCGAGGGTTACGATAGTAGGATCGGCAGCACGCAAGGGGGG-CTGAGC
129 CAGACAGGACCGAGGGTT-CGACAGTAGGATCGGCAGCACGC-AGGGGGGACCGAGC
* * ** *
36250329 CGATCCCCGGCTTATGCATTCTGCCTCTCTGGCTAATTGAGCGCCCGCACGCTCG-TTCATGGGT
1 CGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGT
* * ** ** * * *
36250393 TGACTTAGGCATAGGGAGTTCAT-TCTATGTCTAAGCCCCAGCCG--GA-T-CGAGGGT-TATGG
66 TGACTTAGGCATACGGAGTTCATCCCTATGTCTAAG-CATAGGAGTTCATTCCCA--GTCTAAGG
* * * *
36250452 T-AG-CAGGACC---GG-TAG-C-G--GGATCGACAGCATGCAGAGGGGGACCGGGC
128 TCAGACAGGACCGAGGGTTCGACAGTAGGATCGGCAGCACGCAG-GGGGGACCGAGC
* * * *
36250499 TGATCCCCGACTTGCGCATTATGCCTTTCTGGTCGGCCTCTCCGGCCGATTGAGCGCCCGCACGC
1 CGAT-CCC--C--G-GC-TTACG-CATTC---T--GCCTCTCCGGCCGACTGAGCGCCCGCACGC
* *
36250564 TTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTA-GTCTAAGCATATGGAGTTCATTC
53 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTATGTCTAAGCATA-GGAGTTCATTC
*
36250628 CCAGTCTAAGGTCAGACCGGACCGAGGGTTGCGACAGTAGGATCGGCAGCACGCAGGGGGGACCG
117 CCAGTCTAAGGTCAGACAGGACCGAGGGTT-CGACAGTAGGATCGGCAGCACGCAGGGGGGACCG
36250693 AGC
181 AGC
* * * * *
36250696 CGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTAAGCACCCGCACAC-CTGTTTCGTGGG
1 CGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTC-GTTTCATGGG
* * *
36250760 TTGGCTTAGGCATAGGGAGTTCATTCC-ATGTCTAAGC
65 TTGACTTAGGCATACGGAGTTCATCCCTATGTCTAAGC
36250797 CCCAGCCAGA
Statistics
Matches: 364, Mismatches: 63, Indels: 82
0.72 0.12 0.16
Matches are distributed among these distances:
168 2 0.01
169 18 0.05
170 7 0.02
171 4 0.01
173 2 0.01
174 1 0.00
175 3 0.01
176 2 0.01
177 5 0.01
178 9 0.02
179 4 0.01
180 5 0.01
181 3 0.01
182 3 0.01
183 69 0.19
184 154 0.42
185 3 0.01
186 4 0.01
187 6 0.02
188 4 0.01
189 10 0.03
190 4 0.01
191 2 0.01
192 3 0.01
193 1 0.00
194 2 0.01
195 1 0.00
196 4 0.01
197 14 0.04
198 15 0.04
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (183 bp):
CGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGT
TGACTTAGGCATACGGAGTTCATCCCTATGTCTAAGCATAGGAGTTCATTCCCAGTCTAAGGTCA
GACAGGACCGAGGGTTCGACAGTAGGATCGGCAGCACGCAGGGGGGACCGAGC
Found at i:36250973 original size:159 final size:158
Alignment explanation
Indices: 36250611--36251002 Score: 389
Period size: 159 Copynumber: 2.5 Consensus size: 158
36250601 CCTAGTCTAA
* * * *
36250611 GCATATGGAGTTCATTCCCAGTCTAAGGTCAGACCGGACCGAGGGTTGCGACAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGACCGACA
* * *
36250676 GCACGCAGGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTAAGCACC
66 GCACACAGGGGGGACCGAGCCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGACTAAGCACC
* * *
36250741 CGCACACCTGTTTCGTGGGTTGGCTTAG
131 CGCACACCTATTTCATGGGTTGACTTAG
* ** * * * *
36250769 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGTGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGACAGTAGGACCGA
* * * * * * *
36250832 CAGCACACAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCGGCTCAG-
64 CAGCACACAG-GGGGGACCGAGCCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGACTAAGC
** * * *
36250896 TGCC-CATATGCTCATTTCATGGGTTGACTTAT
128 ACCCGCACA-CCT-ATTTCATGGGTTGACTTAG
* * * *
36250928 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTAC-AGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-CAGTAGGACCGAC
*
36250992 AACACACAGGG
65 AGCACACAGGG
36251003 TTGATCCTTG
Statistics
Matches: 187, Mismatches: 39, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
157 6 0.03
158 64 0.34
159 114 0.61
160 3 0.02
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGACCGACA
GCACACAGGGGGGACCGAGCCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGACTAAGCACC
CGCACACCTATTTCATGGGTTGACTTAG
Found at i:36251113 original size:26 final size:26
Alignment explanation
Indices: 36251077--36251129 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36251067 GTTAGCTTAG
36251077 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
36251103 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
36251129 G
1 G
36251130 ATTTTGTGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:36251840 original size:26 final size:26
Alignment explanation
Indices: 36251811--36251863 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36251801 GTTGACTTAG
*
36251811 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
36251837 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
36251863 G
1 G
36251864 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:36252143 original size:158 final size:156
Alignment explanation
Indices: 36251837--36252336 Score: 445
Period size: 158 Copynumber: 3.2 Consensus size: 156
36251827 CCCAGTCTAA
* ** * * * *
36251837 GCATACAGAGTTCATTCCCA-GTCTAAGATC-AGATCGGACCGAGGGTTGTGGCAGCAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCGA-ATCGGACCGAGAGTTGTGGTAGCAGGACCGA
* * * * * *
36251900 TAGCACGCAGGGGGGACCAGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
64 CAGCACG-AGGGAGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
* * *
36251965 CCCGTC-GCTCGTTTCATGGGTTTGCTTAG
128 CCC-ACACCTCGTTTCCTGGGTTTGCTTAG
* * * * * * **
36251994 GCATAGGGAGTTCATTCCATGTTTAAGCCCTAGTCGGGCTGAGAGTTGTGGTAGTGGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCGAATCGGACCGAGAGTTGTGGTAGCAGGACCGACA
* * * * *
36252059 GCACGTAGAGGAGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGATCGGTTAAGCTC
66 GCACG-AG-GGAGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
*
36252124 CCACACCTCGTTTCCTGGG-TTGACTTAT
129 CCACACCTCGTTTCCTGGGTTTG-CTTAG
* ** * * * * *
36252152 GCATACGGAGTTCATTCCCA-GTCGAAGATCGAATTGGACCGAGGGTTGTTGTAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCGAATCGGACCGAGAGTTGTGGTAGCAGGACCGAC
* * * * *
36252216 AGCACGCGGGGGGATCGGGTCGATCCCTGGCTTGCGTATTCTTCCTCTCCGATCGGCTGAGCGCC
65 AGCACGAGGGAGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
** * *
36252281 TGCACGCTC-ATTCCGTGGGTTGGCTTAG
130 CACAC-CTCGTTTCC-TGGGTTTGCTTAG
36252309 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
36252337 ATACGAAGTT
Statistics
Matches: 270, Mismatches: 63, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
156 61 0.23
157 89 0.33
158 117 0.43
159 3 0.01
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.26
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCGAATCGGACCGAGAGTTGTGGTAGCAGGACCGACA
GCACGAGGGAGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCC
ACACCTCGTTTCCTGGGTTTGCTTAG
Found at i:36252346 original size:26 final size:26
Alignment explanation
Indices: 36252309--36252361 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36252299 GTTGGCTTAG
*
36252309 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
36252335 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
36252361 G
1 G
36252362 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:36254478 original size:26 final size:26
Alignment explanation
Indices: 36254442--36254494 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36254432 GTTGGCTTAG
* *
36254442 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
36254468 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
36254494 G
1 G
36254495 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:36254840 original size:26 final size:26
Alignment explanation
Indices: 36254811--36254862 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
36254801 TTGACTTAGC
*
36254811 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
* *
36254837 CATACAGAGTTCATTCCTAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
36254863 ATCAAATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAG
Found at i:36255746 original size:26 final size:26
Alignment explanation
Indices: 36255716--36255768 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36255706 GTTGACTTAG
36255716 GCATACGAAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
* * *
36255742 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
36255768 G
1 G
36255769 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:36256275 original size:158 final size:159
Alignment explanation
Indices: 36255987--36256399 Score: 377
Period size: 158 Copynumber: 2.6 Consensus size: 159
36255977 GCACGTAGAA
* * * * * * * * * *
36255987 GGGGACCGAGCTAATCCCCGGCTTGCGCATTATGCCTCTCCGACCG-CTTGAGCGCCCACACGCT
1 GGGGACCGGGCCAATCCCCGACTTGCGCATTATGCCTCTTCGGCCGAC-TCAGCACCCGCACACC
* ** * ***
36256051 CATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC-TAGTCTAAG-ATCGGATCAAACCAAG
65 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCCAG-TTGGACCAAG
* * *
36256114 GGTTGCGATAGCAGGATCGAC-AGCACGCAG-G
128 GGTTGCGACAGCAGGACCAACAAG-ACGCAGAG
* * * * * * **
36256145 GGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTTTTCGGTCGACTGAGTGCCCGCACACCC
1 GGGGACCGGGCCAATCCCCGACTTGCGCATTATGCCTCTTCGGCCGACTCAGCACCCGCACACCC
* * * *
36256210 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCAGGGGT
66 ATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCAAGGGT
* * ** *
36256275 TGTGGCAGTGGGACCAACAAGATGCAGAG
131 TGCGACAGCAGGACCAACAAGACGCAGAG
* * * *
36256304 GGGGACCGGGTCAATCCTCGACTTGCGCATTATGCCTCTTCGGCCGGCTCAGCACCCGCACACTC
1 GGGGACCGGGCCAATCCCCGACTTGCGCATTATGCCTCTTCGGCCGACTCAGCACCCGCACACCC
*
36256369 ATTTCATGGGTTGACTTATGCATACGGAGTT
66 ATTTCATGGGTTGACTTAGGCATACGGAGTT
36256400 TATTTCCTAT
Statistics
Matches: 201, Mismatches: 49, Indels: 9
0.78 0.19 0.03
Matches are distributed among these distances:
158 114 0.57
159 87 0.43
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
GGGGACCGGGCCAATCCCCGACTTGCGCATTATGCCTCTTCGGCCGACTCAGCACCCGCACACCC
ATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCAAGGGT
TGCGACAGCAGGACCAACAAGACGCAGAG
Found at i:36257156 original size:26 final size:26
Alignment explanation
Indices: 36257127--36257179 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
36257117 GTTGACTTAG
36257127 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
36257153 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
36257179 G
1 G
36257180 ATCAGATCGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:36259874 original size:317 final size:317
Alignment explanation
Indices: 36259086--36259923 Score: 944
Period size: 317 Copynumber: 2.6 Consensus size: 317
36259076 GCAGGACCAA
* * * * *
36259086 CAGCAAGATCGACAGCACGCAA-GGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCC
1 CAGCAGGATCGACAGTACGCAAGGGGGGAACGGGCCAATCCCCGGCTTGCGCATTCTACCTCTCT
** * * *
36259150 AACCGGTTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
66 GGCCGGCTAAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
* * * *
36259215 CTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGACCGAGAT
131 CTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGAT-AGCAGCACGCAGAGGGGGACCG-GGT
36259280 -GATCCCCGGCTTGTGCATTATGCCTCTTCGACAGGCTCAGTGACCGCACACTCATTTCATGGGT
194 CGATCCCCGGCTTGTGCATTATGCCTCTTCGACAGGCTCAGTGACCGCACACTCATTTCATGGGT
* *** * * **
36259344 TGACTGATGGATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGTGG
259 TAACTGATGGATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAG
* * * * ** ** *
36259403 CAGCAGGATC-AGTAGTATGC-AGGGGGGATCAGATCAATCCCCGGCTTATGCATTCTACCTCTT
1 CAGCAGGATCGA-CAGTACGCAAGGGGGGAACGGGCCAATCCCCGGCTTGCGCATTCTACCTCTC
* * *
36259466 TGGCCGGCTAAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATG
65 TGGCCGGCTAAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
* * * * *
36259531 TCTAAGCCCCAGTCGGACCAAGGGTTGTGGCAACCGGACTAGCAGCACGCAGAGGGGGACTGGGT
130 TCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGA-TAGCAGCACGCAGAGGGGGACCGGGT
* * *
36259596 CGATCCCCGGCTTGCT-CATTATGCCT-TTCCGACCA-GCTCAGTGCCCGCACGCTTATTTCATG
194 CGATCCCCGGCTTG-TGCATTATGCCTCTT-CGA-CAGGCTCAGTGACCGCACACTCATTTCATG
* *
36259658 GGTTAACTTA-GGCATACTG-AGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGTTTGCAG
256 GGTTAACTGATGG-ATAC-GAAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAG
* * * * *
36259720 TAGTAGGATCGACAGTACACAAGGGGGGAACGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCT
1 CAGCAGGATCGACAGTACGCAAGGGGGGAACGGGCCAATCCCCGGCTTGCGCATTCTACCTCTCT
* * *
36259785 GGCCGGCTAAGCGCTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GT
66 GGCCGGCTAAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
**** * * * *
36259849 CTAAG-ATTGGACCGAATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG-GGGGGACCGGGT
131 CTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCAGGATAG-CAGCACGCAGAGGGGGACCGGGT
*
36259912 CGATCCTCGGCT
194 CGATCCCCGGCT
36259924 AGGCATTCTA
Statistics
Matches: 432, Mismatches: 76, Indels: 27
0.81 0.14 0.05
Matches are distributed among these distances:
316 33 0.08
317 302 0.70
318 97 0.22
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (317 bp):
CAGCAGGATCGACAGTACGCAAGGGGGGAACGGGCCAATCCCCGGCTTGCGCATTCTACCTCTCT
GGCCGGCTAAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
CTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGATAGCAGCACGCAGAGGGGGACCGGGTCG
ATCCCCGGCTTGTGCATTATGCCTCTTCGACAGGCTCAGTGACCGCACACTCATTTCATGGGTTA
ACTGATGGATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAG
Found at i:36260071 original size:474 final size:474
Alignment explanation
Indices: 36259098--36260327 Score: 1215
Period size: 474 Copynumber: 2.6 Consensus size: 474
36259088 GCAAGATCGA
* * * * * * * * * ** *
36259098 CAGCACGCA-AGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCAACCGGTTGAGC
1 CAGCACGCAGAGGGGGACTGGGTCGATCCCCAGCTTGCGTATTATACCTCCCCGACCGACTCAGC
* * ** * * ** * *
36259162 GCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG
66 ACCCGCACGCTCATTTCATGGGTTAACTTAGGCATATGAAGTTCATTCCCA-GTCTAAGATCAAA
** * ** *** * * * ** *
36259226 CTGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGACCGAGATGATCCCCGGCT
130 CCAGACCGAGGGTTTTGATAGTAAGATCGACAGCACACAG-GGGGGAACGAGCCGATCCCCAGCT
** * * * * * * * * * * *
36259291 TGTGCATTATGCCTCTTCGACAGGCTCAGTGACCGCACACTCATTTCATGGGTTGACTGATGG-A
194 TACGCATTCTACCTCTCCGGCCGGCTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTA-GGCA
* * * * *
36259355 TACGAAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGTGGCAGCAGGATCAGTAGTA
258 TACGGAGTTCATT-CCAGTCTAAGATTGGACCGAATCGAGGGTTGCGGCAGCAGGATCAGCAGCA
* * * * * * *
36259420 TGCAGGGGGGATCAGATCAATCCCCGGCTTATGCATTCTACCTCTTTGGCCGGCTAAGCGCCCGT
322 CGCAGGGGGGACCAGATCAATCCCCGGCTTAGGCATTCTACCTCTCTAGCCGGCTAAGCACCCGC
* *
36259485 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAGTCGGACC
387 ACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACC
*
36259550 AAGGGTTGTGGCAACCGGACTAG
452 AAGGGTTGTGGCAACCGGACGAG
* * **
36259573 CAGCACGCAGAGGGGGACTGGGTCGATCCCCGGCTTGC-TCATTATGCCTTTCCGACC-AGCTCA
1 CAGCACGCAGAGGGGGACTGGGTCGATCCCCAGCTTGCGT-ATTATACCTCCCCGACCGA-CTCA
** *
36259636 GTGCCCGCACGCTTATTTCATGGGTTAACTTAGGCATACTG-AGTTCATTCCCAGTCTAAGATCA
64 GCACCCGCACGCTCATTTCATGGGTTAACTTAGGCATA-TGAAGTTCATTCCCAGTCTAAGATCA
* * * *
36259700 AACCAGACCGA-GG-TTTGCAGTAGTAGGATCGACAGTACACAAGGGGGGAACGGGCCGATCCCT
128 AACCAGACCGAGGGTTTTG-A-TAGTAAGATCGACAGCACAC-AGGGGGGAACGAGCCGATCCCC
* * * * *
36259763 GGCTTGCGCATTCTACCTCTCTGGCCGGCTAAGCGCTCGCACGCTCGTTTCATGGGTTGGCTTAG
190 AGCTTACGCATTCTACCTCTCCGGCCGGCTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAG
36259828 GCATACGGAGTTCATTCCAGTCTAAGATTGGACCGAATCGAGGGTTGCGGCAGCAGGATC-GACA
255 GCATACGGAGTTCATTCCAGTCTAAGATTGGACCGAATCGAGGGTTGCGGCAGCAGGATCAG-CA
* * * * * *
36259892 GCACGCAGGGGGGACCGGGTCGATCCTCGGC-TAGGCATTCTACCTCTCTAGCTGGCTGAGCACC
319 GCACGCAGGGGGGACCAGATCAATCCCCGGCTTAGGCATTCTACCTCTCTAGCCGGCTAAGCACC
36259956 CGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-TCCG
384 CGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT-CG
** * *
36260020 GACTGAGGGTTGTGGCAGCGGGATCGA-
448 GACCAAGGGTTGTGGCAACCGGA-CGAG
* * * *
36260047 TAGCACGCAGAGGGGGATTGGGTCGATCCTCAGCTTGCGTATTATACCTCCCCGATCGACTCAGC
1 CAGCACGCAGAGGGGGACTGGGTCGATCCCCAGCTTGCGTATTATACCTCCCCGACCGACTCAGC
* * * * * * ** *
36260112 ACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCTAGTCTAGGATCGGAT
66 ACCCGCACGCTCATTTCATGGGTTAACTTAGGCATATGAAGTTCATTCCCAGTCTAAGATCAAAC
* * ** *
36260177 CGGATCGAGGGTTTTGATAGTAAGATCGACAGCATGCAGGGGGGTACGAGCCGATCCCCAGCTTA
131 CAGACCGAGGGTTTTGATAGTAAGATCGACAGCACACAGGGGGGAACGAGCCGATCCCCAGCTTA
* ** * **
36260242 TGCATTCTACCTCTCCGGTTGGCTGAGCGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATAC
196 CGCATTCTACCTCTCCGGCCGGCTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAC
*
36260307 AGAGTTCATTCCATGTCTAAG
261 GGAGTTCATTCCA-GTCTAAG
36260328 CATACGAAGT
Statistics
Matches: 621, Mismatches: 116, Indels: 37
0.80 0.15 0.05
Matches are distributed among these distances:
473 94 0.15
474 241 0.39
475 87 0.14
476 193 0.31
477 6 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (474 bp):
CAGCACGCAGAGGGGGACTGGGTCGATCCCCAGCTTGCGTATTATACCTCCCCGACCGACTCAGC
ACCCGCACGCTCATTTCATGGGTTAACTTAGGCATATGAAGTTCATTCCCAGTCTAAGATCAAAC
CAGACCGAGGGTTTTGATAGTAAGATCGACAGCACACAGGGGGGAACGAGCCGATCCCCAGCTTA
CGCATTCTACCTCTCCGGCCGGCTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAC
GGAGTTCATTCCAGTCTAAGATTGGACCGAATCGAGGGTTGCGGCAGCAGGATCAGCAGCACGCA
GGGGGGACCAGATCAATCCCCGGCTTAGGCATTCTACCTCTCTAGCCGGCTAAGCACCCGCACGC
CCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGG
GTTGTGGCAACCGGACGAG
Found at i:36260300 original size:158 final size:157
Alignment explanation
Indices: 36259085--36260327 Score: 784
Period size: 159 Copynumber: 7.9 Consensus size: 157
36259075 AGCAGGACCA
* * * * * *
36259085 ACAGCAAGATCGACAGCACGCAAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCC
1 ACAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTACGCATTCTACCTCTCC
** * * * * *
36259150 AACCGGTTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
66 GGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATATGAAGTTCATTCCA-GT
* ** * *
36259215 CTAAG-CCCCAGCTGGACCGAGGGTTGTG
130 CTAAGATCGGA-CCGGATCGAGGGTTGTG
* * * * ** * ** * * *
36259243 GCAGCGGGATCGGCAGCACGCAGAGGGGGACCGAGATGATCCCCGGCTTGTGCATTATGCCTCTT
1 ACAGCAGGATCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCAGCTTACGCATTCTACCTCTC
* * * * * * * * * *
36259308 CGACAGGCTCAGTGACCGCACACTCATTTCATGGGTTGACTGATGG-ATACGAAGTTCATTCCCA
65 CGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTA-GGCATATGAAGTTCATT-CCA
*
36259372 GTCTAAGATTGGACCGGATCGAGGGTTGTG
128 GTCTAAGATCGGACCGGATCGAGGGTTGTG
* * * * * * ** * * * *
36259402 GCAGCAGGATC-AGTAGTATGCAGGGGGGATCAGATCAATCCCCGGCTTATGCATTCTACCTCTT
1 ACAGCAGGATCGA-CAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTACGCATTCTACCTCTC
* * * * * * * *
36259466 TGGCCGGCTAAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATG
65 CGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATATGAAGTTCATTCCA-G
* ** * * *
36259531 TCTAAG-CCCCAGTCGGACCAAGGGTTGTG
129 TCTAAGATCGGA-CCGGATCGAGGGTTGTG
* * * * * * * * * * * *
36259560 GCAACCGGA-CTAGCAGCACGCAGAGGGGGACTGGGTCGATCCCCGGCTTGCTCATTATGCCTTT
1 ACAGCAGGATCGA-CAGCACGCAG-GGGGGACCGGGCCGATCCCCAGCTTACGCATTCTACCTCT
* * * * * * **
36259624 CCGACCAGCTCAGTGCCCGCACGCTTATTTCATGGGTTAACTTAGGCATACTG-AGTTCATTCCC
64 CCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA-TGAAGTTCATT-CC
** * *
36259688 AGTCTAAGATCAAACCAGACCGA-GGTT-TG
127 AGTCTAAGATCGGACCGGATCGAGGGTTGTG
* * * * * ** *
36259717 CAGTAGTAGGATCGACAGTACACAAGGGGGGAACGGGCCGATCCCTGGCTTGCGCATTCTACCTC
1 -A-CAGCAGGATCGACAGCACGC-AGGGGGGACCGGGCCGATCCCCAGCTTACGCATTCTACCTC
* * * * * * *
36259782 TCTGGCCGGCTAAGCGCTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
63 TCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATATGAAGTTCATTCCA
* * *
36259847 GTCTAAGATTGGACCGAATCGAGGGTTGCG
128 GTCTAAGATCGGACCGGATCGAGGGTTGTG
* * * * * *
36259877 GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCTCGGC-TAGGCATTCTACCTCTCT
1 ACAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTACGCATTCTACCTCTCC
* * * * * *
36259941 AGCTGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
66 GGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATATGAAGTTCATTCCA-GT
* **
36260006 CTAAG-CCCCATCCGGA-CTGAGGGTTGTG
130 CTAAGATCGGA-CCGGATC-GAGGGTTGTG
* * * ** * * * * * *
36260034 GCAGCGGGATCGATAGCACGCAGAGGGGGATTGGGTCGATCCTCAGCTTGCGTATTATACCTCCC
1 ACAGCAGGATCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCAGCTTACGCATTCTACCTCTC
** * * * * * *
36260099 CGATCGACTCAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCTAG
65 CGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATATGAAGTTCATTCC-AG
* * *
36260164 TCTAGGATCGGATCGGATCGAGGGTTTTG
129 TCTAAGATCGGACCGGATCGAGGGTTGTG
* * * * * *
36260193 ATAGTAAGATCGACAGCATGCAGGGGGGTA-CGAGCCGATCCCCAGCTTATGCATTCTACCTCTC
1 ACAGCAGGATCGACAGCACGCAGGGGGG-ACCGGGCCGATCCCCAGCTTACGCATTCTACCTCTC
** * *
36260257 CGGTTGGCTGAGCGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATA-CAGAGTTCATTCCAT
65 CGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATATGA-AGTTCATTCCA-
36260321 GTCTAAG
128 GTCTAAG
36260328 CATACGAAGT
Statistics
Matches: 833, Mismatches: 221, Indels: 62
0.75 0.20 0.06
Matches are distributed among these distances:
156 71 0.09
157 73 0.09
158 273 0.33
159 395 0.47
160 21 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
ACAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTACGCATTCTACCTCTCC
GGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATATGAAGTTCATTCCAGTC
TAAGATCGGACCGGATCGAGGGTTGTG
Found at i:36260338 original size:26 final size:26
Alignment explanation
Indices: 36260301--36260367 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 26
36260291 GTTGGCTTAG
36260301 GCATAC-AGAGTTCATT-CCATGTCTAA
1 GCATACGA-AGTTCATTCCCA-GTCTAA
36260327 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* * *
36260353 GTATGCGGAGTTCAT
1 GCATACGAAGTTCAT
36260368 GCGATGGGGA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 32 0.89
27 4 0.11
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:36260792 original size:26 final size:26
Alignment explanation
Indices: 36260756--36260808 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36260746 GTTGACTTAG
*
36260756 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
36260782 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
36260808 G
1 G
36260809 ATAGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:36261143 original size:159 final size:159
Alignment explanation
Indices: 36260853--36261178 Score: 352
Period size: 159 Copynumber: 2.1 Consensus size: 159
36260843 GACAGCACGC
* * * * *
36260853 AGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGTCTGAGAACCCGCAAGC
1 AGGGGGACCGGGTCGATCCCCAGCTTGCACATTATGCCTATCCGGCCGGCTCAGAACCCGCAAGC
* * * * * * * * **
36260918 CCATTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGG
66 CCATTTCATGGGTTGACTTAGGCATACGGAGTTAATTCCATGTATAAGCACCAGTCAGACCAAGG
* *
36260983 GTTGTGGTAGCTGGACCGACAGCACACAG
131 GTTGCGGTAGCCGGACCGACAGCACACAG
* ** * **
36261012 AGGGGGACTGGGTCGATCCCTGGCTTGCACATTATGCCTATCCGGTCGGCTCAGTGCCCGCAAGC
1 AGGGGGACCGGGTCGATCCCCAGCTTGCACATTATGCCTATCCGGCCGGCTCAGAACCCGCAAGC
* * *
36261077 TCATTTTATGGGTTGACTTAGGCATACGGAGTTAATTACCA-GTATAAG-ATCAGATCAGACCAA
66 CCATTTCATGGGTTGACTTAGGCATACGGAGTTAATT-CCATGTATAAGCACCAG-TCAGACCAA
* * *
36261140 GGGTTGCGGTAGCCGGATCGATAGCACGCAG
129 GGGTTGCGGTAGCCGGACCGACAGCACACAG
36261171 -GGGGGACC
1 AGGGGGACC
36261179 AGGCTGGTCC
Statistics
Matches: 135, Mismatches: 30, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
158 10 0.07
159 122 0.90
160 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.22
Consensus pattern (159 bp):
AGGGGGACCGGGTCGATCCCCAGCTTGCACATTATGCCTATCCGGCCGGCTCAGAACCCGCAAGC
CCATTTCATGGGTTGACTTAGGCATACGGAGTTAATTCCATGTATAAGCACCAGTCAGACCAAGG
GTTGCGGTAGCCGGACCGACAGCACACAG
Found at i:36262143 original size:157 final size:156
Alignment explanation
Indices: 36261698--36262164 Score: 431
Period size: 159 Copynumber: 3.0 Consensus size: 156
36261688 GATCGGATTG
*** * *
36261698 GACCGAGGGTTACAACAGCAGGATCGACAGCACGCAGGGGGGACCGG-TCGAAT-CCTCAGCTTG
1 GACCGAGGGTTGTGACAGCAGGATCGACAGCACGTA-GGGGGACCGGCT-G-ATCCCT-GGCTTG
* * * *
36261761 TGCATTCTGCCTCTCTGACCGGATGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAG
62 TGCATTCTGCCTCTCTGACTGGATGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* *
36261826 GGAGTTCATTCCATGTCTAAGCCCCAGCCG
127 GGAGTTCATTCCATGTCTAAGCACCAGCCA
** * * * * * * *
36261856 GACCGAGGGTTGTGGTAGCGGGATCGGCAGTACGTTGAGGGGAATCGGGCCGATCCTTGGCTTGT
1 GACCGAGGGTTGTGACAGCAGGATCGACAGCACG-T-AGGGGGA-CCGGCTGATCCCTGGCTTGT
* * ** * * * ** * *
36261921 GCATTATGCCTTTC-GGGTCGGCTCAGCGCCCGCACACTCGTTTCACGGGTTGACTTATGCATAC
63 GCATTCTGCCTCTCTGACT-GGATGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
*
36261985 GGAGTTCATTCCCA-GTCTAAG-ATCAGACCA
127 GGAGTTCATT-CCATGTCTAAGCACCAG-CCA
* **
36262015 GACCGAGGGTTGTGACAGTAGGATCGACAGCACGTAGGGGGACCTGGCTGATCCCTGGCTTGCAC
1 GACCGAGGGTTGTGACAGCAGGATCGACAGCACGTAGGGGGACC-GGCTGATCCCTGGCTTGTGC
* * * * *
36262080 ATTCTGCATCTCTGACTGGTTGAGCACCCGCACGCTCGTTTTGTGAGTTGGCTTAGGCATACGGA
65 ATTCTGCCTCTCTGACTGGATGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
*
36262145 GTTCATTACATGTCTAAGCA
130 GTTCATTCCATGTCTAAGCA
36262165 TACAGAGTTA
Statistics
Matches: 237, Mismatches: 60, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
156 3 0.01
157 83 0.35
158 34 0.14
159 107 0.45
160 10 0.04
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (156 bp):
GACCGAGGGTTGTGACAGCAGGATCGACAGCACGTAGGGGGACCGGCTGATCCCTGGCTTGTGCA
TTCTGCCTCTCTGACTGGATGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGCACCAGCCA
Found at i:36262545 original size:26 final size:26
Alignment explanation
Indices: 36262516--36262568 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36262506 GTTGACATAG
36262516 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
36262542 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
36262568 G
1 G
36262569 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:36262670 original size:880 final size:875
Alignment explanation
Indices: 36260719--36263068 Score: 2621
Period size: 880 Copynumber: 2.7 Consensus size: 875
36260709 CTTTGATCGA
* * * *
36260719 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGC
1 CTGAGTGCCCGTACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCAT-CCCAGTCTAAGC
* ** * *
36260784 ATACGGAGTTCATTCCCAGTCTAAGATAGAATCGGATCGAGGGTTGTGACAACAGGTTCGACAGC
65 ATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTACGACAGCAGGATCGACAGC
* * * **
36260849 ACGCAGGGGGACCGGG-TCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGTCTGAGAACCCG
130 ACGCGGGGGGACCGGGCT-AATCCTCAGCTTGCGCATTCTGCCTCTCCGGCCG-CTGAGCGCCCG
* * *
36260913 CAAGCCCATTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC
193 CACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC
* * * * * * *
36260978 TGAGGGTTGTGGTAGCTGGACCGACAGCACACAGAGGGGGACTGGGTCGATCCCTGGCTTGCACA
258 CGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGA-GGGGAC-GGGCCGATCCCTGGCTTGCGCA
* * *
36261043 TTATGCCTATCCGGTCGGCTCAGTGCCCGCA-AGCTCATTTTATGGGTTGACTTAGGCATACGGA
321 TTATGCCT-TTCGGTCGGCTCAGTGCCCGCACA-CTCATTTCATGGGTTGACTTATGCATACGGA
* * * * * * * * * *
36261107 GTTAATTACCAGTATAAGATCAGATCAGACCAAGGGTTGCGGTAGCCGGATCGATAGCACGCAGG
384 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGG
* * * * * ** *
36261172 GGGGACCAGGCTGGTCCCTGACTTGCGCATTCTGCCTCTCCGGC-CGCTGAGCGCTCATACCCTC
449 GGGGACC-GGCTGATCCCTGACTTGCACATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACACTC
* * ** *
36261236 GTTTCATG-GA-ATGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGTATATGGATTTCATTCC
513 GTTT--TGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCC
** * ** ** * * *
36261299 CAGTCTAAGATTGGACCAAGTCGAGGGTTGTGGCAGCAAGATTAGCACCAGTATCGACAGCATGC
576 CAGTCTAAGATCCGACCAAGCCGAGGGTTGCAGCAGCAAGACCAACACCAGGATCGACAGCACGC
* * * * * * **
36261364 AAGGTGAGATCGGGCCGATCTTCGGCTTGCACATTTTGCCTCTCCGGCCGGTTGAGCACCCGCAC
641 AAGGTCAGATCAGGCCGATCTCCGGCTTGCACATTCTACCTCTCCGACCGACTGAGCACCCGCAC
* * * ** * *
36261429 GCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCGCATCTAAGCCCCAGTCGAACTGA
706 GCTCATTTCATGGGTTGGATTAGACATACAGAGTTCATTCCACATCTAAGCCCCAGTCGAACCGA
* * **
36261494 GGGTTGTGGCAGTAGGATCGGCAGCAGGATCGACAGCATGTAGAGGGGGATCGGGCTGATCTTCG
771 GGGTTGTGGCAGCAGGATCGGCAGCAGGATCGACAGCACGTAGAGGGGGATCGGGCTGATCCCCG
* * * *
36261559 ACTTTCACATTATGCCTTTTCGATCGGCCTCTCCAGCCAG
836 ACTTTCACATTATCCCTCTTCGACCGACCTCTCCAGCCAG
* * * * *
36261599 TTGAGCT-TCCGTTCGGTCGTTTCGTGGGTTGA-ATTAGGCATACGGAGTTTATCTCCAGTCTAA
1 CTGAG-TGCCCGTACGCTCGTTTCGTGGGTTGACA-TAGGCATACGGAGTTCATC-CCAGTCTAA
* * * * * * * * *
36261662 GCATATGGAGTTCTTTCTCGGTCCAAGATCGGATTGGACCGAGGGTTACAACAGCAGGATCGACA
63 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTACGACAGCAGGATCGACA
* * * * * *
36261727 GCACGCAGGGGGGACCGGTCGAATCCTCAGCTTGTGCATTCTGCCTCTCTGACCGGATGAGCGCC
128 GCACGC-GGGGGGACCGGGCTAATCCTCAGCTTGCGCATTCTGCCTCTCCGGCC-GCTGAGCGCC
* *
36261792 CACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
191 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
* * ** * *
36261857 ACCGAGGGTTGTGGTAGCGGGATCGGCAGTACGTTGAGGGGAATCGGGCCGATCCTTGGCTTGTG
256 ACCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGG-A-CGGGCCGATCCCTGGCTTGCG
* * *
36261922 CATTATGCCTTTCGGGTCGGCTCAGCGCCCGCACACTCGTTTCACGGGTTGACTTATGCATACGG
319 CATTATGCCTTTC-GGTCGGCTCAGTGCCCGCACACTCATTTCATGGGTTGACTTATGCATACGG
* *
36261987 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGTAGGATCGACAGCACGTA-
383 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAG
* * * * * *
36262051 GGGGGACCTGGCTGATCCCTGGCTTGCACATTCTGCATCTCTGACTGGTTGAGCACCCGCACGCT
448 GGGGGACC-GGCTGATCCCTGACTTGCACATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACACT
* * **
36262116 CGTTTTGTGAGTTGGCTTAGGCATACGGAGTTCATTACATGTCTAAGCATACAGAGTTAATTTTC
512 CGTTTTGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCC
* * * *
36262181 AGTCTAAGATCCGATC-GGACCGAGGGTTGCAGCAGCAGGACCAACAGCAGGATCGACAGCACGC
577 AGTCTAAGATCCGACCAAG-CCGAGGGTTGCAGCAGCAAGACCAACACCAGGATCGACAGCACGC
* * **
36262245 AGAAGG-CA-CT-AGGTCGATC-CCAGGCTTGTGCATTCTACCTCTCCGACCGACTGAGCACCCG
641 --AAGGTCAGATCAGGCCGATCTCC-GGCTTGCACATTCTACCTCTCCGACCGACTGAGCACCCG
** ** ** *
36262306 CACGCTCATTTTGTGGGTTGGATTAGACATACAGAGTTCATTCCATGTCTAAGCCGTAG-CTGGA
703 CACGCTCATTTCATGGGTTGGATTAGACATACAGAGTTCATTCCACATCTAAGCCCCAGTC-GAA
* * *
36262370 CCGGGGGTTGTGGCAGCAGGA-CTGGTAGCGGGATCGACAGCACGTAGAGGGGGATCGGGCTGAT
767 CCGAGGGTTGTGGCAGCAGGATC-GGCAGCAGGATCGACAGCACGTAGAGGGGGATCGGGCTGAT
* * * * * *
36262434 CCCCGGCTTGT-GCATTATCCCTCTTCGGCCGACCTTTCTTA-CCGG
831 CCCCGACTT-TCACATTATCCCTCTTCGACCGACCTCTC-CAGCCAG
* * *
36262479 CTGAGTGCCCGTACACTCATTTCGTGGGTTGACATAGGCATACAGAGTTCATCCCTAGTCTAAGC
1 CTGAGTGCCCGTACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATCCC-AGTCTAAGC
* * * * *
36262544 ATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTACGATAGTAGGATCGGCAGC
65 ATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTACGACAGCAGGATCGACAGC
* *
36262609 ACGCGGGGGGGACCGGGCTAATCCTCGGCTTGCGTATTCTGCCTCTCCGGCCAGCTGAGCGCCCG
130 ACGC-GGGGGGACCGGGCTAATCCTCAGCTTGCGCATTCTGCCTCTCCGGCC-GCTGAGCGCCCG
* ** * *
36262674 TACATCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAAC
193 CACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC
* * **
36262739 CGAGGGTTGTGGAAGCAGGATCGGCAGCACGCAGAGAGGGACCGAGCCGATCCCTGGCTTGCGTT
258 CGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAG-GGGA-CGGGCCGATCCCTGGCTTGCGCA
* *
36262804 TTATGCCTCTTCGGCCTGCTCAGTGCCCGCACACTCATTTCATGGGTTGACTTATGCATACGGAG
321 TTATGCCT-TTCGGTCGGCTCAGTGCCCGCACACTCATTTCATGGGTTGACTTATGCATACGGAG
* ** * * * * *
36262869 TTCATTCCCAATCTAAGATGGGACCGGACCGAGGGTTTTGGCAGCAGGATTGCCAGCACATAGGG
385 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGG
*
36262934 GGGACCGAGCCGATCTCC-GACTTGCACATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACACTC
450 GGGACCG-GCTGATC-CCTGACTTGCACATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACACTC
* *
36262998 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCA
513 GTTTTGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCA
36263063 GTCTAA
578 GTCTAA
36263069 TATTTTGAGC
Statistics
Matches: 1214, Mismatches: 227, Indels: 57
0.81 0.15 0.04
Matches are distributed among these distances:
879 9 0.01
880 700 0.58
881 495 0.41
882 6 0.00
883 4 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (875 bp):
CTGAGTGCCCGTACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATCCCAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTACGACAGCAGGATCGACAGCA
CGCGGGGGGACCGGGCTAATCCTCAGCTTGCGCATTCTGCCTCTCCGGCCGCTGAGCGCCCGCAC
GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGA
GGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGACGGGCCGATCCCTGGCTTGCGCATTATG
CCTTTCGGTCGGCTCAGTGCCCGCACACTCATTTCATGGGTTGACTTATGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGGGGGACC
GGCTGATCCCTGACTTGCACATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACACTCGTTTTGTG
AGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
TCCGACCAAGCCGAGGGTTGCAGCAGCAAGACCAACACCAGGATCGACAGCACGCAAGGTCAGAT
CAGGCCGATCTCCGGCTTGCACATTCTACCTCTCCGACCGACTGAGCACCCGCACGCTCATTTCA
TGGGTTGGATTAGACATACAGAGTTCATTCCACATCTAAGCCCCAGTCGAACCGAGGGTTGTGGC
AGCAGGATCGGCAGCAGGATCGACAGCACGTAGAGGGGGATCGGGCTGATCCCCGACTTTCACAT
TATCCCTCTTCGACCGACCTCTCCAGCCAG
Found at i:36262863 original size:159 final size:159
Alignment explanation
Indices: 36262597--36263045 Score: 471
Period size: 159 Copynumber: 2.8 Consensus size: 159
36262587 TTACGATAGT
* * ** *
36262597 AGGATCGGCAGCACGCGGGGGGGACCGGGCTAAT-CCTCGGCTTGCGTATTCTGCCTCTCCGGCC
1 AGGATCGGCAGCACGCAGGGGGGACCGAGCCGATCCCT-GGCTTGCGTATTCTGCCTCTTCGGCC
* * * *
36262661 AGCTGAGCGCCCGTACA-TCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
65 TGCTGAGCGCCCGCACACT-CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* *
36262725 AGCCCCAG-TCGAACCGAGGGTTGTGGAAGC
129 AGCACCAGACCGAACCGAGGGTTGTGGAAGC
* * *
36262755 AGGATCGGCAGCACGCAGAGAGGGACCGAGCCGATCCCTGGCTTGCGTTTTATGCCTCTTCGGCC
1 AGGATCGGCAGCACGCAG-GGGGGACCGAGCCGATCCCTGGCTTGCGTATTCTGCCTCTTCGGCC
* * * * * * *
36262820 TGCTCAGTGCCCGCACACTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-ATCTA
65 TGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTA
*** * * *
36262884 AG-ATGGGACCGGACCGAGGGTTTTGGCAGC
129 AGCACCAGACCGAACCGAGGGTTGTGGAAGC
* * ** * ** * *
36262914 AGGATTGCCAGCACATAGGGGGGACCGAGCCGATCTCC-GACTTGCACATTCTGCCTC-TCCGAC
1 AGGATCGGCAGCACGCAGGGGGGACCGAGCCGATC-CCTGGCTTGCGTATTCTGCCTCTTCGGCC
36262977 TGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
65 T-GCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
36263042 AGCA
129 AGCA
36263046 TACAGAGTTC
Statistics
Matches: 236, Mismatches: 46, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
157 8 0.03
158 102 0.43
159 119 0.50
160 7 0.03
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
AGGATCGGCAGCACGCAGGGGGGACCGAGCCGATCCCTGGCTTGCGTATTCTGCCTCTTCGGCCT
GCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CACCAGACCGAACCGAGGGTTGTGGAAGC
Found at i:36263053 original size:26 final size:26
Alignment explanation
Indices: 36263017--36263068 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36263007 GTTGGCTTAG
*
36263017 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
36263043 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
36263069 TATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:36264259 original size:26 final size:26
Alignment explanation
Indices: 36264223--36264275 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36264213 GTTGACTTGG
36264223 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
36264249 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
36264275 G
1 G
36264276 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:36264421 original size:184 final size:183
Alignment explanation
Indices: 36264080--36264434 Score: 401
Period size: 184 Copynumber: 1.9 Consensus size: 183
36264070 ACAGAGTTCC
* * * * *
36264080 TTCCCAGTCTAAGATTGGATCATATCGAGGGTTGCGGTAGCAGGATGGACAGCACGCAGGGGGAC
1 TTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCAGGATGGACAGCACGCAGGGGGAC
*** * * * *
36264145 TGGGCCGATCCTCGACTTGCGCATTATGCCTCTCTGGCCGGTTGAACGCCCAAACACTCGTTTTA
66 CAAGCAGATCCTCGACTTGCGCATTATGCCTCTCCGGCCGGTTGAACGCCCAAACACCCGCTTTA
*
36264210 TGGGTTGACTTGGGCATACGGAGTTCATCCC-CAGTCTAAGCATACGGAGTTTA
131 TGGGTTGACTTAGGCATACGGAGTTCATCCCAC-GTCTAAGCATACGGAGTTTA
* * *
36264263 TTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCAGGATTGATAGCACGTAGGGGGGA
1 TTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCAGGATGGACAGCACGCA-GGGGGA
* * * * * * *** *
36264328 CCAAGCAGGTCC-CTGGCTTGTGCATTCTGCCTCTCCGGTCGGTTGAGCGCCTGCACGCCCGCTT
65 CCAAGCAGATCCTC-GACTTGCGCATTATGCCTCTCCGGCCGGTTGAACGCCCAAACACCCGCTT
* *
36264392 TATGGGTTGGCTTAGGCATA-GGCAGTTCATTCCACGTCTAAGC
129 TATGGGTTGACTTAGGCATACGG-AGTTCATCCCACGTCTAAGC
36264435 CCCAGCCAGA
Statistics
Matches: 140, Mismatches: 28, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
183 53 0.38
184 86 0.61
185 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (183 bp):
TTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCAGGATGGACAGCACGCAGGGGGAC
CAAGCAGATCCTCGACTTGCGCATTATGCCTCTCCGGCCGGTTGAACGCCCAAACACCCGCTTTA
TGGGTTGACTTAGGCATACGGAGTTCATCCCACGTCTAAGCATACGGAGTTTA
Found at i:36264779 original size:26 final size:27
Alignment explanation
Indices: 36264749--36264802 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
36264739 GTTGACTTAG
36264749 GCATACGGAG-TTCATCCCCAGTCTAA
1 GCATACGGAGTTTCATCCCCAGTCTAA
*
36264775 GCATACGGAGTTTCATTCCCAGTCTAA
1 GCATACGGAGTTTCATCCCCAGTCTAA
36264802 G
1 G
36264803 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 10 0.38
27 16 0.62
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (27 bp):
GCATACGGAGTTTCATCCCCAGTCTAA
Found at i:36265285 original size:26 final size:26
Alignment explanation
Indices: 36265249--36265301 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36265239 GTTGACTTTG
36265249 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
36265275 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
36265301 G
1 G
36265302 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:36265933 original size:159 final size:157
Alignment explanation
Indices: 36265275--36265934 Score: 476
Period size: 158 Copynumber: 4.2 Consensus size: 157
36265265 CCCAGTCTAA
* * * * *
36265275 GCATACGGAGTTTATTCCCA-GTCTAAGATC-GAACCGGACCGAGGGTTGCAGTAGCAGGATCGA
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAG-ATCGGACCGAGGGTTACAGTAGCAAGATCGA
* * ** * * * * ** * * * *
36265338 TAGCACGCATGGGGGACCAAGTA-GGTCTCTAGCTTGTGCATTCTGCCTCTTCGGTCGGTTGAGC
64 TAGCATGCAGGGGGGA-CTGGGACGATCCCCAGCTTGCACATTATGCCTCTTCGGTCGGCTCAGT
* * *
36265402 GCCCGCACGCCCGCTTCATGGGTTGGCTTAG
128 GCCC-CACGCTCGTTTCATGGGTTGACTTAG
* * ** * * * * * ***
36265433 GCATA-GGCAGTTCATTCCACGTCTAAGCCCTAGCT-AGACCGAGGGTTGCGGCAGTGGGATCGA
1 GCATACAG-AGTTCATTCCATGTCTAAGATC-AGATCGGACCGAGGGTTACAGTAGCAAGATCGA
* * * * * ** *
36265496 CAGCACGTAGAGGGGGACCGGGTCGATCTTCGGCTTGCACATTATGCCTCTTCGGTCGGCTCAGT
64 TAGCATGCAG-GGGGGACTGGGACGATCCCCAGCTTGCACATTATGCCTCTTCGGTCGGCTCAGT
* * *
36265561 GCCCCACACTCTTTTCATGGGTTGACGTATG
128 GCCCCACGCTCGTTTCATGGGTTGACTTA-G
* * * * * *
36265592 G-ATATAGAGTTCATTCC-TAGTCTAAGATCGGATCGGACTGAGGGTTGCGGTAGCAGGATCGAT
1 GCATACAGAGTTCATTCCAT-GTCTAAGATCAGATCGGACCGAGGGTTACAGTAGCAAGATCGAT
* * * *
36265655 AGCATGCAGGGGGGGCTGGGTCGATCCCCGGCTTGCACATTATGCCTCTTCGGTCGGCTCAGCGC
65 AGCATGCAGGGGGGACTGGGACGATCCCCAGCTTGCACATTATGCCTCTTCGGTCGGCTCAGTGC
* *
36265720 CCGCACGCTTGTTTCATGGGTTGACTTAT
130 CC-CACGCTCGTTTCATGGGTTGACTTAG
* * * * *
36265749 GCATACGGAGTTCATTCCCA-ATCTAAGATTAGA-CTGGACCGATGGTTACAGTAGCAAGATTGA
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAGATC-GGACCGAGGGTTACAGTAGCAAGATCGA
* * * * *
36265812 TAGCATGCAGGGAGGGACT-GGACAGATCCCCAGCTTGCACATTCTGCCTCTCCGGCCGACTAAG
64 TAGCATGCAGGG-GGGACTGGGAC-GATCCCCAGCTTGCACATTATGCCTCTTCGGTCGGCTCAG
* * *
36265876 TGCCCACACGCTCGTTTCGTGTGTTGGCTTAG
127 TGCCC-CACGCTCGTTTCATGGGTTGACTTAG
*
36265908 GCATACCGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
36265935 CCCCAACCGG
Statistics
Matches: 399, Mismatches: 85, Indels: 35
0.77 0.16 0.07
Matches are distributed among these distances:
157 62 0.16
158 205 0.51
159 131 0.33
160 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTACAGTAGCAAGATCGATA
GCATGCAGGGGGGACTGGGACGATCCCCAGCTTGCACATTATGCCTCTTCGGTCGGCTCAGTGCC
CCACGCTCGTTTCATGGGTTGACTTAG
Found at i:36266122 original size:26 final size:26
Alignment explanation
Indices: 36266092--36266144 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36266082 GTTGACTTAG
*
36266092 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
36266118 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
36266144 G
1 G
36266145 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:36266435 original size:159 final size:159
Alignment explanation
Indices: 36266118--36266621 Score: 445
Period size: 159 Copynumber: 3.2 Consensus size: 159
36266108 CCCAGTCTAA
* * ** * *
36266118 GCATACGGAGTTCATTCCCA-ATCTAAGATCAGACCGGACCGAGGGTTGC-GACAGTAGGATCGA
1 GCATACGGAGTTAATT-CCATGTCTAAGCCCAGACCAGACCGAGGGTTGCAG-CAGCAGGATCGA
* * * * * * * * * *
36266181 CAGCACGTAG-GGGGGATCGGGTCGATCCTC-GGCTTGCGCATTCTGCCTCTCCGACCGGTTGAG
64 CAGCACGCAGAGGGGGACCGAGCCAATCC-CAGGCTTGCACATTATGCCTCTCCGACCGGCTCAA
*
36266244 CATCCG-CACACCTGTTTTGTGGGTTGGCTTAG
128 CA-CCGTCACACCCGTTTTGTGGGTTGGCTTAG
* ** *
36266276 GCATA-GGAAGTTCATTCCATGTCTAAGCCCA-AGCCAGACCGAGGGTTGTGGCAGCGGGA-CTG
1 GCATACGG-AGTTAATTCCATGTCTAAGCCCAGA-CCAGACCGAGGGTTGCAGCAGCAGGATC-G
** * *
36266338 GTAGCACGCAGAGGGGGACCGAGCCGATCCTCAGG-TTGCACATTATGCCTCTCCGATCGGCTCA
63 ACAGCACGCAGAGGGGGACCGAGCCAATCC-CAGGCTTGCACATTATGCCTCTCCGACCGGCTCA
* * * * *
36266402 ACGCC-TGCACGCTCGTTTCGTGGGTTGACTTAG
127 ACACCGT-CACACCCGTTTTGTGGGTTGGCTTAG
* ** ** *
36266435 GCACACGGAGTTTGTTCC-TAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGAC
1 GCATACGGAGTTAATTCCAT-GTCTAAGCCCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGAC
* * * * * * *
36266499 AGCACGCAGGGGGGGATCGGGCCAATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCA
65 AGCACGCAGAGGGGGACCGAGCCAATCCCAGGCTTGCACATTATGCCTCTCCGACCGGCTCAACA
*
36266564 CCGTCACACCCATTTTGTGGGTTGGCTTAG
130 CCGTCACACCCGTTTTGTGGGTTGGCTTAG
36266594 GCATACGGAGTTAATTCCATGTCTAAGC
1 GCATACGGAGTTAATTCCATGTCTAAGC
36266622 ATACGGAGTT
Statistics
Matches: 275, Mismatches: 55, Indels: 31
0.76 0.15 0.09
Matches are distributed among these distances:
157 7 0.03
158 56 0.20
159 204 0.74
160 8 0.03
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (159 bp):
GCATACGGAGTTAATTCCATGTCTAAGCCCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACA
GCACGCAGAGGGGGACCGAGCCAATCCCAGGCTTGCACATTATGCCTCTCCGACCGGCTCAACAC
CGTCACACCCGTTTTGTGGGTTGGCTTAG
Found at i:36267632 original size:159 final size:158
Alignment explanation
Indices: 36267380--36267677 Score: 400
Period size: 159 Copynumber: 1.9 Consensus size: 158
36267370 ATCAGACCGA
* * *
36267380 ACCGAGGGTTACGACAGCAGGATCGGCAGCACGCAGGGGGGAACGGGTCAATCCCCGGCTTGTGC
1 ACCGAGGGTTACGACAGCAGGATCGACAGCACACAGGGGGGAACGGGTCAATCCCCGGCTTGCGC
* * * * * *
36267445 ATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGA
66 ATTATGCCTCTCCAGCCGGCTCAACGCCCGCACGCCCGTTTCATGGGTTGACTTAGGAATACGGA
36267510 GTTCATTCCATGTCTAAGCCCCAGCCAG
131 GTTCATTCCATGTCTAAGCCCCAGCCAG
** * * * * * *
36267538 ACCGAGGGTTGTGGCAGCGGGATCGATAGCACACAGAGGGGGATCGGGTCGATCCTCGGCTTGCG
1 ACCGAGGGTTACGACAGCAGGATCGACAGCACACAG-GGGGGAACGGGTCAATCCCCGGCTTGCG
* *
36267603 CATTATGCCTCTCC-GACCGGCTCAACGCCCGCACGCTCGTTTCATGGTTTGACTTAGGAATACG
65 CATTATGCCTCTCCAG-CCGGCTCAACGCCCGCACGCCCGTTTCATGGGTTGACTTAGGAATACG
36267667 GAGTTCATTCC
129 GAGTTCATTCC
36267678 CAATCTAAGA
Statistics
Matches: 119, Mismatches: 19, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
158 30 0.25
159 89 0.75
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.21
Consensus pattern (158 bp):
ACCGAGGGTTACGACAGCAGGATCGACAGCACACAGGGGGGAACGGGTCAATCCCCGGCTTGCGC
ATTATGCCTCTCCAGCCGGCTCAACGCCCGCACGCCCGTTTCATGGGTTGACTTAGGAATACGGA
GTTCATTCCATGTCTAAGCCCCAGCCAG
Found at i:36267713 original size:159 final size:158
Alignment explanation
Indices: 36267380--36267775 Score: 383
Period size: 159 Copynumber: 2.5 Consensus size: 158
36267370 ATCAGACCGA
* * * * * * * *
36267380 ACCGAGGGTTACGACAGCAGGATCGGCAGCACGCAGGGGGGAACGGGTCAATCCCCGGCTTGTGC
1 ACCGAGAGTTGCGGCAGCAGGATCGACAGCACACAGGGGGGATCGGGTCGAT-CCCGGCTTGCGC
* * * * *
36267445 ATTCTGCCTCTCC-AGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGG
65 ATTCTGCCTCTCCGAGCCGGCTCAACGCCCGCACGCCCGTTTCATGGGTTGACTTAGGAATACGG
*
36267509 AGTTCATTCCATGTCTAAGCCCCAGCCAG
130 AGTTCATTCCATATCTAAGCCCCAGCCAG
* * * *
36267538 ACCGAGGGTTGTGGCAGCGGGATCGATAGCACACAGAGGGGGATCGGGTCGATCCTCGGCTTGCG
1 ACCGAGAGTTGCGGCAGCAGGATCGACAGCACACAG-GGGGGATCGGGTCGATCC-CGGCTTGCG
* * *
36267603 CATTATGCCTCTCCGA-CCGGCTCAACGCCCGCACGCTCGTTTCATGGTTTGACTTAGGAATACG
64 CATTCTGCCTCTCCGAGCCGGCTCAACGCCCGCACGCCCGTTTCATGGGTTGACTTAGGAATACG
****
36267667 GAGTTCATTCCCA-ATCTAAG-ATTGGACC-G
129 GAGTTCATT-CCATATCTAAGCCCCAG-CCAG
** * * * *
36267696 TATTGAGAGTTGCGGCAGTAGGATCGACAACATGA-AGGGGGGATCGGG-CTGGTCCCTGGCTTG
1 -ACCGAGAGTTGCGGCAGCAGGATCGACAGCA-CACAGGGGGGATCGGGTC-GATCCC-GGCTTG
36267759 CGCATTCTGCCTCTCCG
62 CGCATTCTGCCTCTCCG
36267776 GCTGGTTATG
Statistics
Matches: 195, Mismatches: 34, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
157 2 0.01
158 70 0.36
159 118 0.61
160 5 0.03
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.21
Consensus pattern (158 bp):
ACCGAGAGTTGCGGCAGCAGGATCGACAGCACACAGGGGGGATCGGGTCGATCCCGGCTTGCGCA
TTCTGCCTCTCCGAGCCGGCTCAACGCCCGCACGCCCGTTTCATGGGTTGACTTAGGAATACGGA
GTTCATTCCATATCTAAGCCCCAGCCAG
Found at i:36268887 original size:26 final size:26
Alignment explanation
Indices: 36268837--36268889 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
36268827 GTTGACTTAG
*
36268837 GCATACGGAGTTCATCTCCAGTCTAA
1 GCATACGGAGTTCATCTCCAATCTAA
*
36268863 GCATATGGAGTTCAT-TCCCAATCTAA
1 GCATACGGAGTTCATCT-CCAATCTAA
36268889 G
1 G
36268890 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAATCTAA
Found at i:36269340 original size:157 final size:160
Alignment explanation
Indices: 36268986--36269372 Score: 383
Period size: 157 Copynumber: 2.4 Consensus size: 160
36268976 CGGCCGGTTG
* * * ** * *
36268986 AGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG-CC
1 AGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCA-ATCTAAGATC
** * * * *
36269049 CCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGACATGACGCATAGGGGGATCGGGCCGATCCCC
65 AGAGTCGGACCGAGGGTTGCGATAGCAGGACCGACATGACACATAGAGGGATCGGGCCGATCCCC
* * *
36269114 GACTTGCCCATTATGCCTCTTCGATCGGCTC
130 GACTTACCCATTATGCATCTTAGATCGGCTC
* * * *
36269145 AGCGCCCGCACGCTCATTTCGTGGGTTGTG-TTATGCATACAGAGTTCATTCCCAATCTAAGATC
1 AGCGCCCGCACACTCGTTTCATGGGTTG-GCTTAGGCATACAGAGTTCATTCCCAATCTAAGATC
* ** **
36269209 AGAGT-GGACCGAGGGTTGCGATAGTAGGATTGACA-G-CACATAGAGGGATCGGGTTGATCCCC
65 AGAGTCGGACCGAGGGTTGCGATAGCAGGACCGACATGACACATAGAGGGATCGGGCCGATCCCC
* ** * * *
36269271 GGCTTATGCATTCTGCATCTCTAG-TTGGCTG
130 GACTTACCCATTATGCATCT-TAGATCGGCTC
* *
36269302 AGTGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATCCCCAATCTAAGCATA
1 AGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAG-AT-
36269367 CAGAGT
64 CAGAGT
36269373 TCATTCCCAG
Statistics
Matches: 186, Mismatches: 35, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
156 1 0.01
157 94 0.51
158 5 0.03
159 78 0.42
160 8 0.04
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (160 bp):
AGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCA
GAGTCGGACCGAGGGTTGCGATAGCAGGACCGACATGACACATAGAGGGATCGGGCCGATCCCCG
ACTTACCCATTATGCATCTTAGATCGGCTC
Found at i:36269366 original size:26 final size:26
Alignment explanation
Indices: 36269336--36269388 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36269326 GTTGGCTTAG
36269336 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
36269362 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
36269388 G
1 G
36269389 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:36269547 original size:184 final size:183
Alignment explanation
Indices: 36269179--36269534 Score: 466
Period size: 184 Copynumber: 1.9 Consensus size: 183
36269169 GTTGTGTTAT
** * *
36269179 GCATACAGAGTTCATTCCCAATCTAAGATCAGAGTGGACCGAGGGTTGCGATAGTAGGATTGACA
1 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGACA
* * ** * * **
36269244 GCACATAGAGGGATCGGGTTGATCCCCGGCTTATGCATTCTGCATCTCTAGTTGGCTGAGTGCCC
66 GCACACAGAGGGACCGGGCCGATCCCCGGCTTATGCATTCTACATCTCGAGTTGGCTGAGCACCC
36269309 GCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATCCCCAATCTAA
131 GCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATCCCCAATCTAA
* * **
36269362 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGTAGGATCGGTA
1 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGACA
* * *
36269427 GCACACAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTACCTCTCCGA-TTGGCTGAGCAC
66 GCACACA-GAGGGACCGGGCCGATCCCCGGCTTATGCATTCTACATCT-CGAGTTGGCTGAGCAC
* *
36269491 CCGCGTGC-CT-GTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
129 CCGC--ACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCAT
36269535 TCCATGTCTA
Statistics
Matches: 148, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
183 63 0.43
184 80 0.54
185 4 0.03
186 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (183 bp):
GCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGACA
GCACACAGAGGGACCGGGCCGATCCCCGGCTTATGCATTCTACATCTCGAGTTGGCTGAGCACCC
GCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATCCCCAATCTAA
Found at i:36269911 original size:342 final size:343
Alignment explanation
Indices: 36269300--36269930 Score: 863
Period size: 342 Copynumber: 1.8 Consensus size: 343
36269290 TCTAGTTGGC
* * *
36269300 TGAGTGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATCCCCAATCTAAGCA
1 TGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCGAAGCA
* * * * * *
36269365 TACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGTAGGATCGGTAGCA
66 TACAGAGTTCATTACCAATCTAAGATCGGACCAGACCGAGGGTTGCAACAGCAAGATCGGTAGCA
* * * * *
36269430 CACAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTACCTCTCCGATTGGCTGAGCACCCGC
131 CACAAGGGGGACCGGGCCGATCCCCGGCTTATGCATTCTACCTCTCCAATCGACTGAGCACCCGC
* ** * *
36269495 GTGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACT
196 ATGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
* *
36269560 GAAGGTTGTGGCAGCGGGACTGGCAGCACGCAAAGGGGGATCGAACTGATCCCCAGCTTGTGCAT
261 GAAGGTTGTGACAGCGGGACCGGCAGCACGCAAAGGGGGATCGAACTGATCCCCAGCTTGTGCAT
36269625 TATGCCTCTCCGGCCGGT
326 TATGCCTCTCCGGCCGGT
* * * *
36269643 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGATTTCAT-CCTAGTCGAAGCA
1 TGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCGAAGCA
* * * *
36269707 TAC-GTAGTTCATTACCAATCTAAGATTGGACCAGATCGAGGGTTGCAATAGCAAGATTGGTAGC
66 TACAG-AGTTCATTACCAATCTAAGATCGGACCAGACCGAGGGTTGCAACAGCAAGATCGGTAGC
** * * * *
36269771 ACGTAAGGGGGACTGGGCCGATCCCCGTCTTATGTATTCTACCTCTCCAATCGACTGAGCGCCCG
130 ACACAAGGGGGACCGGGCCGATCCCCGGCTTATGCATTCTACCTCTCCAATCGACTGAGCACCCG
* *
36269836 CATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCCA-CCGGA
195 CATGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCCAGCCGGA
* * *
36269900 CCGAGGGTTGTGACAGTGGGTCCGGCAGCAC
259 CCGAAGGTTGTGACAGCGGGACCGGCAGCAC
36269931 ACAGAGAAGG
Statistics
Matches: 246, Mismatches: 40, Indels: 5
0.85 0.14 0.02
Matches are distributed among these distances:
341 1 0.00
342 193 0.78
343 52 0.21
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (343 bp):
TGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCGAAGCA
TACAGAGTTCATTACCAATCTAAGATCGGACCAGACCGAGGGTTGCAACAGCAAGATCGGTAGCA
CACAAGGGGGACCGGGCCGATCCCCGGCTTATGCATTCTACCTCTCCAATCGACTGAGCACCCGC
ATGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
GAAGGTTGTGACAGCGGGACCGGCAGCACGCAAAGGGGGATCGAACTGATCCCCAGCTTGTGCAT
TATGCCTCTCCGGCCGGT
Found at i:36271226 original size:14 final size:14
Alignment explanation
Indices: 36271207--36271234 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
36271197 GTGCATTATG
36271207 CCTCTCCGACCGGC
1 CCTCTCCGACCGGC
36271221 CCTCTCCGACCGGC
1 CCTCTCCGACCGGC
36271235 TGAGCGCCCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.57, G:0.21, T:0.14
Consensus pattern (14 bp):
CCTCTCCGACCGGC
Found at i:36271585 original size:158 final size:158
Alignment explanation
Indices: 36271338--36271639 Score: 378
Period size: 158 Copynumber: 1.9 Consensus size: 158
36271328 AACCGAAGCG
* *
36271338 AGGGTTGCGGCAGCAGGATCGATAGCACGCAGGGGGGACCGAGCCGATCCTCGACTTACGCATTT
1 AGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCTCGACTTACGCATTA
* * *
36271403 TACCTCTCCGGTCGGTTGAGCGCCCGTTCGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTC
66 TACCTCTCCGGTAGGTTGAGCGCCCGCTCGCCCATTTCATGGGTTGACTTAGGCATAGGGAGTTC
*
36271468 ATTCCATGTCTAAGCCCCAGTCAGACCA
131 ATTCCATATCTAAGCCCCAGTCAGACCA
* * * * *
36271496 AGGGTTGTGGCAGCAGGAAT-GGCAGCACGCAGAGGGGGACCGGGCCGATCC-CTGGCTTGC-CA
1 AGGGTTGCGGCAGCAGG-ATCGACAGCACGCAG-GGGGGACCGAGCCGATCCTC-GACTTACGCA
* * * * * *
36271558 TTATGCCTCTTCGGTAGGCTT-AGCGCCCGCTCGCTCATTTCGTGGGTTGACTTATGCATATGGA
63 TTATACCTCTCCGGTAGG-TTGAGCGCCCGCTCGCCCATTTCATGGGTTGACTTAGGCATAGGGA
*
36271622 GTTCATTCCTTATCTAAG
127 GTTCATTCCATATCTAAG
36271640 ATCGAACTGG
Statistics
Matches: 122, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
158 96 0.79
159 26 0.21
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (158 bp):
AGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCTCGACTTACGCATTA
TACCTCTCCGGTAGGTTGAGCGCCCGCTCGCCCATTTCATGGGTTGACTTAGGCATAGGGAGTTC
ATTCCATATCTAAGCCCCAGTCAGACCA
Found at i:36272519 original size:26 final size:26
Alignment explanation
Indices: 36272489--36272541 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36272479 GTTGACTTAG
36272489 GCATACGGAGTTCA-TCCCGAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
36272515 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
36272541 G
1 G
36272542 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:36274116 original size:314 final size:316
Alignment explanation
Indices: 36273499--36274277 Score: 978
Period size: 314 Copynumber: 2.5 Consensus size: 316
36273489 GGACCGGATC
* * * * *
36273499 GAGGGTTGCGACAGTAGGATCGACAGCACGCAGGGGGGTACGGGCCGATCCTCGACTTGCGCATT
1 GAGGGTTACGGCAGCAGGATCGACAGCACGTAGGGGGG-ACGGGACGATCCTCGACTTGCGCATT
* * * *
36273564 CTGCCTCTCC-AGCTGGCTGAATGACCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGAAGT
65 CTGCCTCTCCGA-CTGGTTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGT
* * * * *
36273628 TCATTCCATTTTTAAGCCCCAACCGGACTGAGGGTTGTGGCAGCGGGACCAGCAGCACGCAGAAG
129 TCATTCCATGTCTAAGCACCAACCAGACTGAGGGTTGTGGCAGCGGGACCAGCAACACGCAGAAG
* ** *
36273693 GGGTCCGGGTCGATCCTCAGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCACACACTAG
194 GGGACCGGACCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCACACACTAG
* * * * *
36273758 TTTTGTGTGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGA-TCGAACTAGACA
259 TTTCGTGGGTTGACTTATGCATACAGAGCTCATTCCCAGTCTAAGACTCGAACGA-ACA
* * *
36273816 GAGGGTTACGGTAGCAGGATCGACAGCACGTAGGGGGGACCGGGACGATCCCCGACTTGTGCATT
1 GAGGGTTACGGCAGCAGGATCGACAGCACGTAGGGGGGA-CGGGACGATCCTCGACTTGCGCATT
* * * * *
36273881 CTGCCTCTCCGACTGGTTGAGCGCCCGCACGCTCGTTCCAT-GCTTGGCTTAGGCATACG-AGTT
65 CTGCCTCTCCGACTGGTTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTT
* * *
36273944 CATTCCATGTCTAAGCACCAGCCAGACTGAGGGTTGTGGCAGGGGGA-CAGACAACACGCAGAGG
130 CATTCCATGTCTAAGCACCAACCAGACTGAGGGTTGTGGCAGCGGGACCAG-CAACACGCAGAAG
* * * ** *
36274008 GGGACC-GACCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCGGCGCCCGCATGCTCG
194 GGGACCGGACCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCACACACTAG
* * * *
36274072 TTTCGTGGGTTGACTTATGCATACAGAGCTCATTCCTAGTCTAAGACTGGATCGAACC
259 TTTCGTGGGTTGACTTATGCATACAGAGCTCATTCCCAGTCTAAGACTCGAACGAACA
* * * * *
36274130 GAGGGTTGCGGCAGTAGGATCGATAGCACGTAGGGGGTGATCGGGTCGATCCTCGGCTTGCGCAT
1 GAGGGTTACGGCAGCAGGATCGACAGCACGTAGGGGG-GA-CGGGACGATCCTCGACTTGCGCAT
* *
36274195 TCTGCCTCTCTGA-TCGGTTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAA
64 TCTGCCTCTCCGACT-GGTTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAG
36274259 TTCATTCCATGTCTAAGCA
128 TTCATTCCATGTCTAAGCA
36274278 TACGGAGTTC
Statistics
Matches: 394, Mismatches: 60, Indels: 16
0.84 0.13 0.03
Matches are distributed among these distances:
314 129 0.33
315 123 0.31
316 34 0.09
317 107 0.27
318 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (316 bp):
GAGGGTTACGGCAGCAGGATCGACAGCACGTAGGGGGGACGGGACGATCCTCGACTTGCGCATTC
TGCCTCTCCGACTGGTTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTC
ATTCCATGTCTAAGCACCAACCAGACTGAGGGTTGTGGCAGCGGGACCAGCAACACGCAGAAGGG
GACCGGACCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCACACACTAGTT
TCGTGGGTTGACTTATGCATACAGAGCTCATTCCCAGTCTAAGACTCGAACGAACA
Found at i:36274264 original size:159 final size:158
Alignment explanation
Indices: 36273467--36274275 Score: 585
Period size: 159 Copynumber: 5.1 Consensus size: 158
36273457 CAACATGTGG
* * * * * * *
36273467 AGTTCATTCCCA-GTTTAAGATTGGACCGGATCGAGGGTTGCGACAGTAGGATCGACAGCACGCA
1 AGTTCATT-CCATGTCTAAGACTCGACCGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
* * * * ** *
36273531 GGGGGGTA-CGGGCCGATCCTCGACTTGCGCATTCTGCCTCTC-CAGCTGGCTGAATGACCGCAC
65 GGGGGG-ACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGA-CCGGTTGAGCGCCCGCAC
*
36273594 GCTCATTTCGTGGGTTGGCTTAGGCATAGGA
128 GCTCATTTCGTGGGTTGGCTTAGGCATACGA
* * * * * * * * * *
36273625 AGTTCATTCCATTTTTAAGCCCCAACCGGACTGAGGGTTGTGGCAGCGGGA-CCAGCAGCACGCA
1 AGTTCATTCCATGTCTAAGACTCGACCGAACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCA
* * * * * * * * *
36273689 GAAGGGGTCCGGGTCGATCCTCAGCTTGCGCATTATGCCTCT-TCGGCCGGCTCAGCGCCCACAC
65 G-GGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCT-GACCGGTTGAGCGCCCGCAC
* * * * * *
36273753 ACT-AGTTTTGTGTGTTGACTTATGCATACGG
128 GCTCA-TTTCGTGGGTTGGCTTAGGCATACGA
* * * * * *
36273784 AGTTCATTCCCA-GTCTAAGA-TCGAACTAGACAGAGGGTTACGGTAGCAGGATCGACAGCACGT
1 AGTTCATT-CCATGTCTAAGACTCGACCGA-ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * * * * *
36273847 AGGGGGGACCGGGACGATCCCCGACTTGTGCATTCTGCCTCTCCGACTGGTTGAGCGCCCGCACG
64 AGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGACCGGTTGAGCGCCCGCACG
* * * *
36273912 CTCGTTCCAT-GCTTGGCTTAGGCATACG-
129 CTCATTTCGTGGGTTGGCTTAGGCATACGA
* * ** *
36273940 AGTTCATTCCATGTCTAAGCAC-C-AGCC-AGACTGAGGGTTGTGGCAGGGGGA-CAGACAACAC
1 AGTTCATTCCATGTCTAAG-ACTCGA-CCGA-ACCGAGGGTTGCGGCAGCAGGATC-GACAGCAC
* * * * *
36274001 GCAGAGGGGGACC-GACCGATCCCCGGCTTGCGCATTATGCCTCT-TCGGCCGGCTCG-GCGCCC
62 GCAG-GGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCT-GACCGG-TTGAGCGCCC
* * * *
36274063 GCATGCTCGTTTCGTGGGTTGACTTATGCATAC-A
124 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGA
* * * * * *
36274097 GAGCTCATTCC-TAGTCTAAGACTGGATCGAACCGAGGGTTGCGGCAGTAGGATCGATAGCACGT
1 -AGTTCATTCCAT-GTCTAAGACTCGACCGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * * *
36274161 AGGGGGTGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCTGATCGGTTGAGTGCCCGCAC
64 AGGGGG-GACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGACCGGTTGAGCGCCCGCAC
36274226 GCTCATTTCGTGGGTTGGCTTAGGCATACGA
128 GCTCATTTCGTGGGTTGGCTTAGGCATACGA
*
36274257 AATTCATTCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
36274276 CATACGGAGT
Statistics
Matches: 496, Mismatches: 121, Indels: 67
0.73 0.18 0.10
Matches are distributed among these distances:
155 4 0.01
156 92 0.19
157 53 0.11
158 150 0.30
159 189 0.38
160 8 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
AGTTCATTCCATGTCTAAGACTCGACCGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
GGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGACCGGTTGAGCGCCCGCACGCT
CATTTCGTGGGTTGGCTTAGGCATACGA
Found at i:36274288 original size:26 final size:26
Alignment explanation
Indices: 36274249--36274301 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
36274239 GTTGGCTTAG
36274249 GCATACGAAATTCATT-CCATGTCTAA
1 GCATACGAAATTCATTCCCA-GTCTAA
* *
36274275 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
36274301 G
1 G
36274302 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:36275001 original size:26 final size:26
Alignment explanation
Indices: 36274971--36275023 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
36274961 GTTGACTTAG
*
36274971 GCATACGGAA-TTCATCCCCAGTCTAA
1 GCATA-GGAAGTTCATCCCCAATCTAA
* *
36274997 GCATATGAAGTTCATTCCCAATCTAA
1 GCATAGGAAGTTCATCCCCAATCTAA
36275023 G
1 G
36275024 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 3 0.13
26 20 0.87
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATAGGAAGTTCATCCCCAATCTAA
Done.