Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 402 of 402
Found at i:36275372 original size:171 final size:171
Alignment explanation
Indices: 36275132--36275456 Score: 445
Period size: 171 Copynumber: 1.9 Consensus size: 171
36275122 GCACCCGCAC
* * * * *
36275132 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAAGCCCCAGTCGGACTGA
1 GCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATCTCTAAGCCCCAGTCGGACAGA
* * * *
36275197 GGGTTGTGGCAGCAGGACTGACAGTAGGATCAACAGCAGGCAAAGGGGGATCGGGCTGATCTCCG
66 GGGTTGTGGCAGCAGGACCGACAGTAGGATCAACAGCACGCAAAGGGGGATCGGCCTGATCCCCG
* *
36275262 GCTTATGCATAATGCCTCTCCGACTGGCTGAGTGTCAACAT
131 GCTTAAGCATAATACCTCTCCGACTGGCTGAGTGTCAACAT
36275303 GCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATCTCTAAGCCCCAG-CTGGACAG
1 GCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATCTCTAAGCCCCAGTC-GGACAG
* * **** * * *
36275367 AGGGTTGTGGCAGTAGGACCGACAGTGGGATTGGTAGCACGTAGAGGGGGATTGGCCTGATCCCC
65 AGGGTTGTGGCAGCAGGACCGACAGTAGGATCAACAGCACGCAAAGGGGGATCGGCCTGATCCCC
*
36275432 GGCTTAAGCATTATACCTCTCCGAC
130 GGCTTAAGCATAATACCTCTCCGAC
36275457 CGGCCTCTCT
Statistics
Matches: 132, Mismatches: 21, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
170 1 0.01
171 131 0.99
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.25
Consensus pattern (171 bp):
GCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATCTCTAAGCCCCAGTCGGACAGA
GGGTTGTGGCAGCAGGACCGACAGTAGGATCAACAGCACGCAAAGGGGGATCGGCCTGATCCCCG
GCTTAAGCATAATACCTCTCCGACTGGCTGAGTGTCAACAT
Found at i:36275882 original size:26 final size:26
Alignment explanation
Indices: 36275852--36275904 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
36275842 GTTGACTTAG
36275852 GCATAC-GAAGTTCA-TCCCCAGTCTAA
1 GCATACAG-AGTTCACT-CCCAGTCTAA
36275878 GCATACAGAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
36275904 G
1 G
36275905 ATTAACCCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:36276581 original size:26 final size:26
Alignment explanation
Indices: 36276545--36276597 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36276535 GTTGACTTAG
*
36276545 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
36276571 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
36276597 G
1 G
36276598 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:36277427 original size:355 final size:341
Alignment explanation
Indices: 36276515--36277624 Score: 936
Period size: 355 Copynumber: 3.2 Consensus size: 341
36276505 CGGCTGAATG
* * *
36276515 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-GAAGTTCATCCCCAGTCTAAGCAAACGGA
* * * ** * *
36276580 GTTCATTCCCAGTCTAAGATCGGATCAGACT-GAGGGTGGCGGCAGCAGGATCGACAGCACGTAG
65 GTTCATTCCCAGTCTAAGATCGGATC-GAATCGAGGGTTGCGGTAATAGGATCGACAGAACGAAG
* * * * ** * * * **
36276644 GGGGGATCGGGCCGATCCACGAGTTGCGCATTCTGCCTCTTTGGTCAGCTGAG-AGCCCGCACGT
129 GGGGGACCGAGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCA-CCTGCACAC
*** * *
36276708 CCGTTTTGCGGGTTGGCTTAGGCATAAGGACTTC-ATCCCATGTCTAAGCCCCAG-TCGGACCGA
193 CCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCAAT-CCATGTCTAAGCCCCAGCT-GGACTGA
* * * *
36276771 GGGTTGTGGCAGTGGGACCGACAGCACACAGAGGGGGACGGGCCGATCCCCGGCTTACATATTAT
256 GGGTTGTGGCAGTGGGACCGACAGAACACAGAGAGGGACGAGCCGATCCCCGGCTTACACATTAT
* **
36276836 GCCTCTCCGGTCGGCTCAGTG
321 GCCTCTCCGGCCGGCTCAGCA
* * * *
36276857 CCCCCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAA-GG
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGA-AGTTCATCCCCAGTCTAAGCA-AACGG
*
36276921 AGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGCAGGACTAGCAATAGGATC
64 AGTTCATTCCCAGTCTAAGATCGGATCGAATCGAGGGTT------GC-GG--T---AATAGGATC
** * * * * * * * *
36276986 GGTAGCATAC-AGGGGGGGACCGAGTCGATCCTCGGCTTACTCATTCTGCCCCTCCGGCTGGCTA
117 GACAG-A-ACGAAGGGGGGACCGAGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCCGGCTG
* * * * * * *
36277050 AACGCCTGCACACTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCAATCCATGTCTAAGCCCT
180 AGCACCTGCACACCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCAATCCATGTCTAAGCCCC
* ** *
36277115 AGCTGGACTGAGGGTTGTGGCAACAAGACCGATAGCGGGATCGGTAGAACGCAGAGAGGGACCGA
245 AGCTGGACTGAGGGTTGTGG---C---A--G-T---GGGACCGACAGAACACAGAGAGGGA-CGA
* * * * *
36277180 GCTGATCCCTGGCTTACGCATTATGCCTCTCCGGCCGGTTGAGCA
297 GCCGATCCCCGGCTTACACATTATGCCTCTCCGGCCGGCTCAGCA
* ** *
36277225 CCCGTACGCTCGTTTCGTGGGTTGACTTTCGCATATGAAGTTCATCCCCAGTATAAGCAAACGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-GAAGTTCATCCCCAGTCTAAGCAAACGGA
* *
36277290 GTTCATTCCCAGCCTAAGATCAGATCGAATCGAGGGTTGCGGTAATAGGATCGACAGAACGAAGG
65 GTTCATTCCCAGTCTAAGATCGGATCGAATCGAGGGTTGCGGTAATAGGATCGACAGAACGAAGG
* * *
36277355 GGGGACCGAACCGATCCTCGACTTGCGCGTTATGCCTCTCCGGCCGGCTGAGCACCTGCACACCC
130 GGGGACCGAGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCTGCACACCC
* * * * * **
36277420 GTTTCATGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCCAAGCCCCACCCAGACTGAGGGT
195 GTTTCATGGGTTGGCTTAGGCATAAGGAGTTCAATCCATGTCTAAGCCCCAGCTGGACTGAGGGT
* ** * * * * * * * * * *
36277485 TGTGGTAGCAGGACTGGCAGTACGCAGAGGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCC
260 TGTGGCAGTGGGACCGACAGAACACAGAGAGGGA-CGAGCCGATCCCCGGCTTACACATTATGCC
** *
36277550 TCTTTGGCCGGCTCAGCG
324 TCTCCGGCCGGCTCAGCA
* * * * *
36277568 CCCGTACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCTAGTCTAAG
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-GAAGTTCATCCCCAGTCTAAG
36277625 ATCAGACCAA
Statistics
Matches: 604, Mismatches: 128, Indels: 71
0.75 0.16 0.09
Matches are distributed among these distances:
341 2 0.00
342 87 0.14
343 107 0.18
347 1 0.00
348 2 0.00
349 3 0.00
354 12 0.02
355 217 0.36
356 17 0.03
358 1 0.00
359 1 0.00
361 3 0.00
362 2 0.00
363 1 0.00
364 1 0.00
367 21 0.03
368 125 0.21
369 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (341 bp):
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGAAGTTCATCCCCAGTCTAAGCAAACGGAG
TTCATTCCCAGTCTAAGATCGGATCGAATCGAGGGTTGCGGTAATAGGATCGACAGAACGAAGGG
GGGACCGAGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCTGCACACCCG
TTTCATGGGTTGGCTTAGGCATAAGGAGTTCAATCCATGTCTAAGCCCCAGCTGGACTGAGGGTT
GTGGCAGTGGGACCGACAGAACACAGAGAGGGACGAGCCGATCCCCGGCTTACACATTATGCCTC
TCCGGCCGGCTCAGCA
Found at i:36277654 original size:159 final size:159
Alignment explanation
Indices: 36277353--36277785 Score: 437
Period size: 159 Copynumber: 2.7 Consensus size: 159
36277343 ACAGAACGAA
** * * *
36277353 GGGGGGACCGAACCGATCCTCGACTTGCGCGTTATGCCTCTCCGGCCGGCTGAGCACCTGCACAC
1 GGGGGGACCGGGCCGATCCTCGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGCACCCGCACGC
* * * * * * * * *
36277418 CCGTTTCATGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCCAAGCCCCACCCAGACTGAGG
66 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAACCAAACTGAGA
** * **
36277483 GTTGTGGTAGCAGGA-CTGGCAG-TACGCA-
131 GTTGCAGCAGCAGGATC-AACAGCT-CGCAT
* * * ** * * *
36277511 GAGGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTTTGGCCGGCTCAGCGCCCGTACG
1 G-GGGGGACCGGGCCGATCCTCGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGCACCCGCACG
* * *
36277576 CTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACCAAACTG
65 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCA-ACCAAACTG
36277639 AGAGTTGCAGCAGCAGGATCAACAGCTCGCAT
128 AGAGTTGCAGCAGCAGGATCAACAGCTCGCAT
* * * * *
36277671 GGGGGGACCGGGCCGATCC-CTGATTTGCGCATTCTGCCTCTCCGACCGACTGAGCTCCCGCACG
1 GGGGGGACCGGGCCGATCCTC-GACTTGCGCATTATGCCTCTCCGGCCGGCTGAGCACCCGCACG
* *
36277735 TTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
65 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
36277786 TACGGAGTTC
Statistics
Matches: 220, Mismatches: 46, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
158 5 0.02
159 210 0.95
160 5 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
GGGGGGACCGGGCCGATCCTCGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGCACCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAACCAAACTGAGA
GTTGCAGCAGCAGGATCAACAGCTCGCAT
Found at i:36277793 original size:26 final size:26
Alignment explanation
Indices: 36277757--36277809 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
36277747 GTTGGCTTAG
36277757 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
36277783 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
36277809 G
1 G
36277810 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:36279025 original size:26 final size:26
Alignment explanation
Indices: 36278988--36279040 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36278978 GTAGGCTTAG
*
36278988 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
36279014 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
36279040 G
1 G
36279041 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:36279501 original size:158 final size:157
Alignment explanation
Indices: 36279022--36279828 Score: 695
Period size: 158 Copynumber: 5.1 Consensus size: 157
36279012 AAGCATACGA
* * *
36279022 AGTTCATTCCCA-GTCTAAGATCGGACCGGACCGA-GGTTGTGGTAGCAGGATCGGCAACACGCA
1 AGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGTA
* * * * *
36279085 GGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGACTGAGTGCCCGCACGC
65 GGGGGGA-CGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCGCCCGCACGC
* *
36279150 CCGTTTCGTGGGTTGGCTTAGGCATAGGG
129 TCGTTTTGTGGGTTGGCTTAGGCATAGGG
* ** * * * * *
36279179 AGTTCATTCCATGTCTAAG-CCCTAGTCGGATCGAGGGTTGTGGCAGCAGGACCAACAGCACGTA
1 AGTTCATTCCATGTCTAAGATCGGA-CCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGTA
* * * * * * * * *
36279243 GAGGGGACTAGG-CTGATCCTC-ACTTGCGCATTATGCCTCTTC-GATCGGCTCAGCACCCGTAC
65 GGGGGGAC-GGGTC-GATCCCCGGCTTGCGCATTCTGCCTCTCCAG-TCGGCTGAGCGCCCGCAC
* * * *
36279305 GCTCATTTTGTGGGTTGACTTATGCATACGG
127 GCTCGTTTTGTGGGTTGGCTTAGGCATAGGG
* *
36279336 AGTTCATTCTCA-GTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCATGTA
1 AGTTCATTC-CATGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGTA
* * *
36279400 GGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCAGTCGGCTGAGCGCCCGCACAC
65 GGGGGGA-CGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCGCCCGCACGC
* *
36279465 CCGTTTTATGGGTTGGCTTAGGCATAGGG
129 TCGTTTTGTGGGTTGGCTTAGGCATAGGG
* * * * * * ** * * * *
36279494 AGTTCATTCCATGTCTAAGCCTCTG-TCAGACCAAGGGTTGTGGCAGCAAAACCGATATCACGCA
1 AGTTCATTCCATGTCTAAG-ATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGTA
** * * ** *
36279558 GAGGGGGACTGGGTCGAT-CTTGGCTTGCCCATTAC-ACCT-TTTAGGTCGGCTCAGCGCCCGCA
65 G-GGGGGAC-GGGTCGATCCCCGGCTTGCGCATT-CTGCCTCTCCA-GTCGGCTGAGCGCCCGCA
* * *
36279620 CGCTCGTTTTGTGGGTTGACTTATGCATACGG
126 CGCTCGTTTTGTGGGTTGGCTTAGGCATAGGG
** * * * * * *
36279652 AGTTCATTCCCA-GTCTAAGATTAGACAGGGCTGAGGGTTGCGGTAACAGGATCGATAGCACGTA
1 AGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGTA
* * * * *
36279716 GGGGGGACCGAGTCGATCCCCAGCTTGCGCATTTTGCCTCTCCGGCCGGCTGAGCGCCCGCACGC
65 GGGGGGA-CGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCGCCCGCACGC
* **
36279781 TTGTTTCATGGGTTGGCTTAGGCAT-GCGG
129 TCGTTTTGTGGGTTGGCTTAGGCATAG-GG
36279810 AGTTCATTCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
36279829 CATACAGAGT
Statistics
Matches: 503, Mismatches: 121, Indels: 51
0.75 0.18 0.08
Matches are distributed among these distances:
156 6 0.01
157 162 0.32
158 313 0.62
159 22 0.04
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
AGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGTAG
GGGGGACGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCGCCCGCACGCTC
GTTTTGTGGGTTGGCTTAGGCATAGGG
Found at i:36279756 original size:316 final size:315
Alignment explanation
Indices: 36279014--36279829 Score: 1091
Period size: 316 Copynumber: 2.6 Consensus size: 315
36279004 CCCAGTCTAA
* * *
36279014 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA-GGTTGTGGTAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * *
36279078 ACACGCAGGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGACTGAGTGCC
66 GCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
* *
36279143 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGG
131 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCAG
* * ** * *
36279208 ATCGAGGGTTGTGGCAGCAGGACCAACAGCACGTAGAGGGGACTAGGCTGATCCTCACTTGCGCA
196 ACCAAGGGTTGTGGCAGCAAAACCAACAGCACGCAGAGGGGACTAGGCTGATCCTCACTTGCCCA
** * *
36279273 TTATGCCTCTTCGATCGGCTCAGCACCCGTACGCTCATTTTGTGGGTTGACTTAT
261 TTACACCTCTTAGATCGGCTCAGCACCCGCACGCTCATTTTGTGGGTTGACTTAT
*
36279328 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * *
36279393 GCATGTAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCAGTCGGCTGAGCGCC
66 GCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
* *
36279458 CGCACACCCGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCT-GTCA
131 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC-CTAGTCA
* * * * * **
36279522 GACCAAGGGTTGTGGCAGCAAAACCGATATCACGCAGAGGGGGACT-GGGTCGATCTTGGCTTGC
195 GACCAAGGGTTGTGGCAGCAAAACCAACAGCACGCAGA-GGGGACTAGGCT-GATCCTCACTTGC
* * * *
36279586 CCATTACACCTTTTAGGTCGGCTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAT
258 CCATTACACCTCTTAGATCGGCTCAGCACCCGCACGCTCATTTTGTGGGTTGACTTAT
** * * * * *
36279644 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACAGGGCTGAGGGTTGCGGTAACAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * *
36279709 GCACGTAGGGGGGACCGAGTCGATCCCCAGCTTGCGCATTTTGCCTCTCCGGCCGGCTGAGCGCC
66 GCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
**
36279774 CGCACGCTTGTTTCATGGGTTGGCTTAGGCAT-GCGGAGTTCATTCCATGTCTAAGC
131 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG-GGAGTTCATTCCATGTCTAAGC
36279830 ATACAGAGTT
Statistics
Matches: 437, Mismatches: 60, Indels: 8
0.87 0.12 0.02
Matches are distributed among these distances:
314 40 0.09
315 166 0.38
316 231 0.53
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (315 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
GCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCAG
ACCAAGGGTTGTGGCAGCAAAACCAACAGCACGCAGAGGGGACTAGGCTGATCCTCACTTGCCCA
TTACACCTCTTAGATCGGCTCAGCACCCGCACGCTCATTTTGTGGGTTGACTTAT
Found at i:36280777 original size:158 final size:156
Alignment explanation
Indices: 36280490--36280907 Score: 402
Period size: 158 Copynumber: 2.6 Consensus size: 156
36280480 TCGGACCGAG
* * * *
36280490 GGCCGATTCCCAGCTTACGCATTTTGCCTATCCGGTCGGTTGAGCGCCGCACGCCCGTTTCGTTG
1 GGCCG-TTCCCAGCTTTCGCATTTTGCCTCTCC-GTCGGCTGAGCGCCGCACGCTCGTTTCGTTG
** * * * *
36280555 GTTGGCTTAGGCATAGGGATTTCATT-CCATGTCTAAGCCCCAACTGGACCAAGGGTTGTGGCAG
64 GTTGGCTTAGGCATACAGAGTTCATTCCCATGTCTAAGACCCAACTGGACCAAGGGCTGCGGCAG
* * *
36280619 CGGGACCGACA-TCCGTAGAAGG-GGA-CTA
129 CAGGACCGACAGTACGCAG--GGAGGATC-A
* * *
36280647 GGCCGTTCCTCAGCTTTCGCATTATGCCTCTCCGATCGGCTCAGCGCCTGCACGCTCGTTTCGTG
1 GGCCGTTCC-CAGCTTTCGCATTTTGCCTCTCCG-TCGGCTGAGCGCC-GCACGCTCGTTTCGTT
* * * * *
36280712 GGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATCGAA-TCGGACCGAGTGCTGCGGC
63 GGTTGGCTTAGGCATACAGAGTTCATTCCCATGTCTAAGACCCAACT-GGACCAAGGGCTGCGGC
*
36280775 AGCAGGATCGACAGTACGCAGGGAGGATCA
127 AGCAGGACCGACAGTACGCAGGGAGGATCA
** * * * *
36280805 AACTGATCCCTAGATTGT-GCATTTTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCTCGTTTCGT
1 GGCCGTTCCC-AGCTT-TCGCATTTTGCCTCTCCGTC-GGCTGAGCG-CCGCACGCTCGTTTCGT
*
36280869 TGGTTGGCTTAGGCATACAGAGTTCATT-CAATGTCTAAG
62 TGGTTGGCTTAGGCATACAGAGTTCATTCCCATGTCTAAG
36280908 CATACGAAGT
Statistics
Matches: 215, Mismatches: 33, Indels: 25
0.79 0.12 0.09
Matches are distributed among these distances:
156 5 0.02
157 43 0.20
158 155 0.72
159 12 0.06
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.26
Consensus pattern (156 bp):
GGCCGTTCCCAGCTTTCGCATTTTGCCTCTCCGTCGGCTGAGCGCCGCACGCTCGTTTCGTTGGT
TGGCTTAGGCATACAGAGTTCATTCCCATGTCTAAGACCCAACTGGACCAAGGGCTGCGGCAGCA
GGACCGACAGTACGCAGGGAGGATCA
Found at i:36281536 original size:26 final size:26
Alignment explanation
Indices: 36281500--36281552 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36281490 GTTGACTTAG
36281500 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
36281526 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
36281552 G
1 G
36281553 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:36281833 original size:159 final size:158
Alignment explanation
Indices: 36281526--36282027 Score: 437
Period size: 158 Copynumber: 3.2 Consensus size: 158
36281516 CCCAGTCTAA
* *** * * * * * * *
36281526 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGACAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCTAGTCTAAGACCAGATCGGACCGAGGGTTGTGGCAGCAGGACCAGCA
* * ** *
36281591 GCACGCAGGGGGGACCGGACCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGCCTGCTGAGCACC
66 GCACGCAGGGGGGACCGGACCGATCCCCGGCCTGTGCATTATGCCTCTTCGGCAAGCTCAGCACC
*
36281656 CGCACGCCTGTTTCGTGGGTTGGCTTAG
131 CGCACGCCTGTTTCGTGGGTTGACTTAG
* * *
36281684 GCATAGGGAGTTCATTCC-ATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCAGGACCTG
1 GCATACGGAGTTCATTCCTA-GTCTAAG-ACCAGATCGGACCGAGGGTTGTGGCAGCAGGACCAG
* * * * *
36281747 CAGCACGCAGAGGGGGACTGGGCTGATCCCCGGCCTGTGCATTATGCCTCTTTGGCAAGCTCAGT
64 CAGCACGCAG-GGGGGACCGGACCGATCCCCGGCCTGTGCATTATGCCTCTTCGGCAAGCTCAGC
* *
36281812 GCCCGCACGCTCAT-TTT-GTGGGTTGACTTAT
128 ACCCGCACGC-C-TGTTTCGTGGGTTGACTTAG
*** * * *
36281843 GCATACGGAGTTCATTCCTAGTCTAAGATTGGATCAGACTGAGGGTTGTGGCAGCAGGACCAACA
1 GCATACGGAGTTCATTCCTAGTCTAAGACCAGATCGGACCGAGGGTTGTGGCAGCAGGACCAGCA
* * * ** * * * ** * *
36281908 GCACGCAGGGGGGATCGTACCGATCCTC-AACT-TGC-TTATTCTACTTGTTCGACTGGTTGAGC
66 GCACGCAGGGGGGACCGGACCGATCCCCGGCCTGTGCATTATGC--C-TCTTCGGCAAGCTCAGC
*
36281970 ACCCGCACG-CTCGTTTCGTGGGTTGGCTTAG
128 ACCCGCACGCCT-GTTTCGTGGGTTGACTTAG
36282001 GCATACGGAGTTCATTCC-ATGTCTAAG
1 GCATACGGAGTTCATTCCTA-GTCTAAG
36282028 CATAAGGAGT
Statistics
Matches: 276, Mismatches: 54, Indels: 28
0.77 0.15 0.08
Matches are distributed among these distances:
155 6 0.02
156 4 0.01
157 8 0.03
158 126 0.46
159 126 0.46
160 5 0.02
161 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCTAGTCTAAGACCAGATCGGACCGAGGGTTGTGGCAGCAGGACCAGCA
GCACGCAGGGGGGACCGGACCGATCCCCGGCCTGTGCATTATGCCTCTTCGGCAAGCTCAGCACC
CGCACGCCTGTTTCGTGGGTTGACTTAG
Found at i:36282037 original size:26 final size:26
Alignment explanation
Indices: 36282001--36282053 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36281991 GTTGGCTTAG
*
36282001 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATAAGGAGTTCATTCCTA-GTCTAA
36282027 GCATAAGGAGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATTCCTAGTCTAA
36282053 G
1 G
36282054 ATTTTGAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCTAGTCTAA
Found at i:36283230 original size:20 final size:20
Alignment explanation
Indices: 36283194--36283231 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
36283184 ATAGGGATCA
*
36283194 ACAGCACGTAAGTGGGATTG
1 ACAGCACGTAAGGGGGATTG
*
36283214 ACAGCACGTAGGGGGGAT
1 ACAGCACGTAAGGGGGAT
36283232 CGATAGCCGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.16, G:0.39, T:0.16
Consensus pattern (20 bp):
ACAGCACGTAAGGGGGATTG
Found at i:36284348 original size:158 final size:158
Alignment explanation
Indices: 36284077--36284646 Score: 545
Period size: 158 Copynumber: 3.6 Consensus size: 158
36284067 CCCGTTTGAT
* * * * *
36284077 CCCGGCTTGCGC-TTCCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
1 CCCGGCTTGCACATT-CTACCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * * *
36284141 TTAGGCATACGAAGTTCATTTC-TAGTATAAGATCAGACCGGATCAAGGGTTGTGGTAGCAAGAT
65 TTAGGCATACGAAGTTCATTCCAT-GTCTAAGATCAGACCAGACCAAGGGTTGTGGTAGCAAGAT
* *
36284205 CGATAGCATGCAGGGGGGACCGGGTCAATC
129 CGATAGCACGCAGGGGGGACCGGGCCAATC
** * * * *
36284235 CCCGGCTTGTGCATTCTACCTCTCCGACCGATTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCT
1 CCCGGCTTGCACATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * ** * * * *
36284300 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGTAGCGAGACC
66 TAGGCATACGAAGTTCATTCCATGTCTAAG-ATCAGACCAGACCAAGGGTTGTGGTAGCAAGATC
* * *
36284364 GACAGCACGCAGAGGGGGACCGAGCCGATC
130 GATAGCACGCAG-GGGGGACCGGGCCAATC
* * * * * * ** ** * * *
36284394 CCCGGCTTGCACATTATGCCCCTCCGGTCGGCTCAATGCCCATATGCTCATTTCGTGGGTTGAAT
1 CCCGGCTTGCACATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
** *
36284459 TAGGCATACGAAGTTCATTCCCA-GTCTAAGATTGGACCAGACCAAGGGTTGTGGCAGCAAGATC
66 TAGGCATACGAAGTTCATT-CCATGTCTAAGATCAGACCAGACCAAGGGTTGTGGTAGCAAGATC
* ** * *
36284523 AATAGCACGCATTGTGGACTGGGCCAATC
130 GATAGCACGCAGGGGGGACCGGGCCAATC
** * * * * * *
36284552 CTTGACTTGCACATTCTTCCTCTCCGATCGACTGGGGGCCCGCACGCTCGTTTCGTTGGTTGGCT
1 CCCGGCTTGCACATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
*
36284617 TAGGCATACGGAGTTCATTCCATGTCTAAG
66 TAGGCATACGAAGTTCATTCCATGTCTAAG
36284647 CATATGGAGT
Statistics
Matches: 321, Mismatches: 84, Indels: 14
0.77 0.20 0.03
Matches are distributed among these distances:
157 3 0.01
158 193 0.60
159 122 0.38
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.25
Consensus pattern (158 bp):
CCCGGCTTGCACATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
TAGGCATACGAAGTTCATTCCATGTCTAAGATCAGACCAGACCAAGGGTTGTGGTAGCAAGATCG
ATAGCACGCAGGGGGGACCGGGCCAATC
Found at i:36284656 original size:26 final size:26
Alignment explanation
Indices: 36284620--36284672 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36284610 GTTGGCTTAG
36284620 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
36284646 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
36284672 G
1 G
36284673 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:36285382 original size:26 final size:26
Alignment explanation
Indices: 36285352--36285404 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36285342 GTTGACTTAG
36285352 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
36285378 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
36285404 G
1 G
36285405 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:36285738 original size:159 final size:159
Alignment explanation
Indices: 36285378--36285882 Score: 449
Period size: 159 Copynumber: 3.2 Consensus size: 159
36285368 CCCAATCTAA
* * * * *
36285378 GCATACGGAGTTCATTCCCA-ATCTAAG-ATCGGATCGGACCGAGGGTTACGGTAACAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGA-CGGACCGAGGGTTACGGCAGCAGGATCGA
* * * * * * * * *
36285441 CTGCACGTAAGGG-GG-ACCGAGCCGATCCTTGGCTTATGCATTCTGCCACTTCGATCGACTGAG
64 CAGCAC-AAAGGGTGGTATCGAGCCGATCCTCGGCTTATGCATTATGCCTCTCCGATCGGCTAAG
* * *
36285504 CGCCTGTACGC-CT-GTTTCGTGGGTTGGCTTAG
128 CACC--CACACACTCGTTTCGTGGGTTGGCTTAG
* * * * ** * * *
36285536 GCATAGGGAGTTCATTCCATGTCTATGCCCCAGTCGGACCGAGGGTTGTGGCTGTAGGA-CTGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACGGACCGAGGGTTACGGCAGCAGGATC-GAC
* * *
36285600 AGCACGCAAAGGG-GG-ATCGAGCTGATCCTCGGCTTACT-CATTATGCCTCTCTGATCGGCTCA
65 AGCA--CAAAGGGTGGTATCGAGCCGATCCTCGGCTTA-TGCATTATGCCTCTCCGATCGGCTAA
* * *
36285662 GCGCCCGCACACTCGTTTCGTGGGTTGACTTAG
127 GCACCCACACACTCGTTTCGTGGGTTGGCTTAG
* * *
36285695 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACTGGGCCGAGGGTTACGGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGAC-GGACCGAGGGTTACGGCAGCAGGATCGA
* * * * * *
36285758 CTGCACACAGGGTGGTATCGGGCCGATCTTCGGCTTATGCATTCTGCCTCTCCGGTCGGCTAAGC
64 CAGCACAAAGGGTGGTATCGAGCCGATCCTCGGCTTATGCATTATGCCTCTCCGATCGGCTAAGC
36285823 ACCCACACACTCGTTTCGTGGGTTGGCTTAG
129 ACCCACACACTCGTTTCGTGGGTTGGCTTAG
*
36285854 GCATACGGAGTTCATTTCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
36285883 TACGGAGTTC
Statistics
Matches: 276, Mismatches: 55, Indels: 30
0.76 0.15 0.08
Matches are distributed among these distances:
157 12 0.04
158 55 0.20
159 202 0.73
160 7 0.03
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACGGACCGAGGGTTACGGCAGCAGGATCGACA
GCACAAAGGGTGGTATCGAGCCGATCCTCGGCTTATGCATTATGCCTCTCCGATCGGCTAAGCAC
CCACACACTCGTTTCGTGGGTTGGCTTAG
Found at i:36285903 original size:26 final size:26
Alignment explanation
Indices: 36285854--36285907 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
36285844 GTTGGCTTAG
*
36285854 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
36285880 GCATACGGAGTTCATTCC-TAGTCTAA
1 GCATACGGAGTTCATTCCAT-GTCTAA
36285906 GC
1 GC
36285908 TCAGACCAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:36286311 original size:159 final size:156
Alignment explanation
Indices: 36286112--36286858 Score: 507
Period size: 159 Copynumber: 4.8 Consensus size: 156
36286102 GTAGGATCAA
* * * *
36286112 CAGCACGTAAGGGGGATCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCAGCTAGCTGAGCA
1 CAGCACGCAAGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCC-GCTGGCTGAGCA
*
36286177 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
65 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGAC
* *
36286242 GGACCAAGGGTTGTGGCAGCGGGACTGG
130 -GACCGAGGGTTGTGGCAGCAGGACTGG
* * * * * *
36286270 CAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGACCGGCTTAGC
1 CAGCACGCA-AGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCG-CTGGCTGAGC
* * * * * * * **
36286335 ACCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATCAG
64 ACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG
* * ** *
36286398 ACTATACGAGGGTTCCGACAGCAGGA-TCGG
128 ACGA-CCGAGGGTTGTGGCAGCAGGACT-GG
* ** * * * * * * *
36286428 TAGCACGC-AGGGGGATCGGGTTGATCCTCGGCTTGTGCATTCTGCCTCTTCGATCGGCTGAGCG
1 CAGCACGCAAGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGCT-GGCTGAGCA
* * * * * *
36286492 GCTGCTCGCCCGTTTCATGGGTTGGCCTAGGCATAGGGAGTCCATTCCATGTCTAAGCCCCAGCC
65 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGAC
*
36286557 AGACTGAGGGTTGTGGCAGCAGGACTGG
130 -GACCGAGGGTTGTGGCAGCAGGACTGG
* * * * * * * *
36286585 CAGCACGCAGAGAGGGATTGGGCCGATCCCCGACTTACGCATTATGCTTCTCCGATCAGCTCAAC
1 CAGCACGCA-AGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGCT-GGCTGAGC
** * * * * * * * * **
36286650 GGCTGCACACTCATTTTATGGGTTGACGTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATC-G
64 ACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG
* * *
36286712 --GA-CTA--G-TGCGGCAGCAGGA-TCGA
128 ACGACCGAGGGTTGTGGCAGCAGGACT-GG
* * ** * ** * * *
36286735 CTGCATGC-AGGGTGGTATCGGGCCGATCTTCGGCTTATGCATTCTGCCTCTCCGGTCGGCTAAG
1 CAGCACGCAAGGG-GG-ATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGCT-GGCTGAG
* * * * *
36286799 CACCCACATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
63 CACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
36286859 ATACGGAGTT
Statistics
Matches: 456, Mismatches: 115, Indels: 43
0.74 0.19 0.07
Matches are distributed among these distances:
148 3 0.01
149 6 0.01
150 100 0.22
151 1 0.00
153 1 0.00
154 2 0.00
155 3 0.01
156 85 0.19
157 32 0.07
158 40 0.09
159 177 0.39
160 6 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
CAGCACGCAAGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGCTGGCTGAGCAC
CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGACG
ACCGAGGGTTGTGGCAGCAGGACTGG
Found at i:36286525 original size:315 final size:314
Alignment explanation
Indices: 36285962--36286858 Score: 1010
Period size: 315 Copynumber: 2.9 Consensus size: 314
36285952 CGACAACACA
* * * * * *
36285962 CAGA-GGGGACCGGGTCGATCCTTGGCTTGCGCATTATACCTCTTCGGCCAGCTTAGTGCCCGTA
1 CAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGACCAGCTTAGCGCCCGCA
* * *
36286026 CACTCATTTCGTGGGTTGACTTATGCATAC-AGGTTCATTCCCAATCTAAGATCGGACCGA-ATC
66 CACTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGA-C-ATA-C
* * * * * ** *
36286089 GAGGGTTACGACAGTAGGATCAACAGCACGTAAGGGGGATCGGGCCGATCCCCAACTTGCGCATT
128 GAGGGTTACGACAGCAGGATCGATAGCACG-CAGGGGGATCGGGCCGATCCTCGGCTTGTGCATT
* * * *
36286154 CTGCCTC-TCCAGCTAGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGT
192 CTGCCTCTTCGATC-GGCTGAGCACCCGCTCGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGT
* * *
36286218 TCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTTGTGGCAGCGGGACTGGCAGCACG
256 TCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCAGGACTGGCAGCACG
* *
36286277 CAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGACCGGCTTAGCACCCGCA
1 CAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGACCAGCTTAGCGCCCGCA
*
36286342 CACTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTATACGA
66 CACTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGAC-ATACGA
* * **
36286407 GGGTTCCGACAGCAGGATCGGTAGCACGCAGGGGGATCGGGTTGATCCTCGGCTTGTGCATTCTG
130 GGGTTACGACAGCAGGATCGATAGCACGCAGGGGGATCGGGCCGATCCTCGGCTTGTGCATTCTG
** * * *
36286472 CCTCTTCGATCGGCTGAGCGGCTGCTCGCCCGTTTCATGGGTTGGCCTAGGCATAGGGAGTCCAT
195 CCTCTTCGATCGGCTGAGCACCCGCTCGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
**
36286537 TCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCAGGACTGGCAGCACG
260 TCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCAGGACTGGCAGCACG
* ** * * * * * * * * * *
36286592 CAGAGAGGGATTGGGCCGATCCCCGACTTACGCATTATGCTTCTCCGATCAGCTCAACGGCTGCA
1 CAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGACCAGCTTAGCGCCCGCA
** * *
36286657 CACTCATTTTATGGGTTGACGTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-T---A-
66 CACTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACATACGAG
* * * * *
36286717 -G-TGCGGCAGCAGGATCGACT-GCATGCAGGGTGGTATCGGGCCGATCTTCGGCTTATGCATTC
131 GGTTACGACAGCAGGATCGA-TAGCACGCAGGG-GG-ATCGGGCCGATCCTCGGCTTGTGCATTC
* * * * * * *
36286779 TGCCTCTCCGGTCGGCTAAGCACCCACAT-GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
193 TGCCTCTTCGATCGGCTGAGCACCCGC-TCGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
36286843 CATTCCATGTCTAAGC
257 CATTCCATGTCTAAGC
36286859 ATACGGAGTT
Statistics
Matches: 495, Mismatches: 79, Indels: 22
0.83 0.13 0.04
Matches are distributed among these distances:
307 23 0.05
308 4 0.01
309 90 0.18
310 2 0.00
313 1 0.00
315 238 0.48
316 113 0.23
317 24 0.05
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (314 bp):
CAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGACCAGCTTAGCGCCCGCA
CACTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACATACGAG
GGTTACGACAGCAGGATCGATAGCACGCAGGGGGATCGGGCCGATCCTCGGCTTGTGCATTCTGC
CTCTTCGATCGGCTGAGCACCCGCTCGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT
CCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCAGGACTGGCAGCACG
Found at i:36286867 original size:26 final size:26
Alignment explanation
Indices: 36286831--36286884 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
36286821 GTTGGCTTAG
36286831 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
36286857 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
36286883 GC
1 GC
36286885 TCAGACCAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:36287357 original size:977 final size:979
Alignment explanation
Indices: 36285451--36288041 Score: 3280
Period size: 977 Copynumber: 2.6 Consensus size: 979
36285441 CTGCACGTAA
* * * * * * *
36285451 GGGGGACCGAGCCGATCCTTGGCTTATGCATTCTGCCACTTCGATCGACTGAGCGCCTG-TACGC
1 GGGGGATCGGGCCGATCCTCGGCTTGTGCATTCTGCCTCTTCGATCGGCTGAGCGACTGCT-CGC
* * * * *
36285515 CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGCCCCAGTCGGACCGAGG
65 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
* * * * * * * *
36285580 GTTGTGGCTGTAGGACTGGCAGCACGCAAAGGGGGATCGAGCTGATCCTCGGCTTACTCATTATG
130 GTTGTGGCAGTAGGACTGGCAGCACGCAGAGAGGGATCGGGCCGATCCCCGACTTACGCATTATG
* *
36285645 CCTCTCTGATCGGCTCAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
195 CCTCTCTGATCGGCTCAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * **
36285710 TCCCAGTCTAAGATCAGACTGGGCCGAGGGTTACGGCAGCAGGATCGACTGCACACAGGGTGGTA
260 TCCCAGTCTAAGATCGGACT------A-GG-TGCGGCAGCAGGATCGACTGCATGCAGGGTGGTA
*
36285775 TCGGGCCGATCTTCGGCTTATGCATTCTGCCTCTCCGGTCGGCTAAGCACCCACACACTCGTTTC
317 TCGGGCCGATCTTCGGCTTATGCATTCTGCCTCTCCGGTCGGCTAAGCACCCACACGCTCGTTTC
*
36285840 GTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCATACGGAGTTCATTCCTAGTCTA
382 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTA
* *
36285905 AGCTCAGACCAGATCGAGGGTTGCGACAGTAGGACCAGCAACAGGATCGACAACACACAGAGGGG
447 AGCTCAGACCAGATCGAGGGTTGCGACAGTAGGACCAGCAGCAGGATCGACAACACGCAGAGGGG
** * * * *
36285970 ACCGGGTCGATCCTTGGCTTGCGCATTATACCTC-TTCGGCCAGCTTAGTGCCCGTACACTCATT
512 ACCGGGTCGATCCTTGGCTTGCGCATTATACCTCTTTC-GCTGGCTCAGCGCCCGTACGCTCGTT
* * * *
36286034 TCGTGGGTTGACTTATGCATACAGGTTCATTCCCAATCTAAGATCGGACCGAATCGAGGGTTACG
576 TCGTGGGTTGACTTATGCATACGGGTTCATTCCCAATCTAAGATCAGACCGAATCAAGGGCTACG
** * *
36286099 ACAGTAGGATCAACAGCACGTAAGGGGGATCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCC
641 ACAGTAGGATCAACAGCACACAAGGGGGATCAGGCCGATCCCCAACTTGCACATTCTGCCTCTCC
* *
36286164 AGCTAGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
706 AGCTAGCTGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGCCATAGGGAGTTCATTCCATGT
36286229 CTAAGCCCCAGTCGGACCAAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGGGGACCGGGCC
771 CTAAGCCCCAGTCGGACCAAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGGGGACCGGGCC
* * *
36286294 GATCCCTGGCTTGCGCATTATGCCTCTTCGACCGGCTTAGCACCCGCACACTCATTTCGTGGGTT
836 GATCCCTGGCTTGCGAATTATGCCTCTTCGACCGGCTCAACACCCGCACACTCATTTCGTGGGTT
*
36286359 GACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTATACGAGGGTTCCGACAGCAGGA
901 GACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTATACGAGGGTTCCAACAGCAGGA
36286424 TCGGTAGCACGCA-
966 TCGGTAGCACGCAG
** *
36286437 GGGGGATCGGGTTGATCCTCGGCTTGTGCATTCTGCCTCTTCGATCGGCTGAGCGGCTGCTCGCC
1 GGGGGATCGGGCCGATCCTCGGCTTGTGCATTCTGCCTCTTCGATCGGCTGAGCGACTGCTCGCC
* * *
36286502 CGTTTCATGGGTTGGCCTAGGCATAGGGAGTCCATTCCATGTCTAAGCCCCAGCCAGACTGAGGG
66 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
* *
36286567 TTGTGGCAGCAGGACTGGCAGCACGCAGAGAGGGATTGGGCCGATCCCCGACTTACGCATTATGC
131 TTGTGGCAGTAGGACTGGCAGCACGCAGAGAGGGATCGGGCCGATCCCCGACTTACGCATTATGC
* * * * * * ** *
36286632 TTCTCCGATCAGCTCAACGGCTGCACACTCATTTTATGGGTTGACGTAGGCATACGGAGTTCATT
196 CTCTCTGATCGGCTCAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
36286697 CCCAGTCTAAGATCGGACTA-GTGCGGCAGCAGGATCGACTGCATGCAGGGTGGTATCGGGCCGA
261 CCCAGTCTAAGATCGGACTAGGTGCGGCAGCAGGATCGACTGCATGCAGGGTGGTATCGGGCCGA
*
36286761 TCTTCGGCTTATGCATTCTGCCTCTCCGGTCGGCTAAGCACCCACATGCTCGTTTCGTGGGTTGG
326 TCTTCGGCTTATGCATTCTGCCTCTCCGGTCGGCTAAGCACCCACACGCTCGTTTCGTGGGTTGG
36286826 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGCTCAGAC
391 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGCTCAGAC
36286891 CAGATCGAGGGTTGCGACAGTAGGACCAGCAGCAGGATCGACAACACGCAGAGGGGACCGGGTCG
456 CAGATCGAGGGTTGCGACAGTAGGACCAGCAGCAGGATCGACAACACGCAGAGGGGACCGGGTCG
* * *
36286956 ATCCTTGGCTTGCGCATTATACCTCTTTTGCTGGCTCAGCACCCGTACGCTCGTTTCGTGGGTTC
521 ATCCTTGGCTTGCGCATTATACCTCTTTCGCTGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTG
* ** * *
36287021 ACTTATGCATACGGGTTCGTTCCCAATCTAAGATCAGATTGGATCAAGGGCTACGATAGTAGGAT
586 ACTTATGCATACGGGTTCATTCCCAATCTAAGATCAGACCGAATCAAGGGCTACGACAGTAGGAT
* * * * ** * * * *
36287086 CGACAGTACACAAGGGGGATCAGGTCGATCCTCGGCTTGCACATTCTGCCTCTTC-GATCGGCTT
651 CAACAGCACACAAGGGGGATCAGGCCGATCCCCAACTTGCACATTCTGCCTCTCCAGCT-AGCTG
*
36287150 AGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCC
715 AGCACCCGCACACCCGTTTCATGGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCC
* * * * * * *
36287215 ATTCGGACCGAGGGTTGTGGTAGTGGGA-TCGGTAGCTCGCAGAGGGGGACTGGGCCGATCCCTG
780 AGTCGGACCAAGGGTTGTGGCAGCGGGACT-GGCAGCACGCAGAGGGGGACCGGGCCGATCCCTG
** * * * *
36287279 GCTTGCGAATTATGCCTCTTCGATTGGCTCAACGCTCGCACACTCGTTTCGTTGGTTGACTTAGG
844 GCTTGCGAATTATGCCTCTTCGACCGGCTCAACACCCGCACACTCATTTCGTGGGTTGACTTAGG
** * * *
36287344 CATAC-AGAGTTCATTCCCAGTCTAAGATCAGGTTGTACGAGGGTTTCAACAGTAGGATCGGTAG
909 CATACGA-AGTTCATTCCCAGTCTAAGATCAGACTATACGAGGGTTCCAACAGCAGGATCGGTAG
36287408 CACGCAG
973 CACGCAG
* * * * *
36287415 GGGGGATCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGATCGGCTGAGTGACTGCTCACC
1 GGGGGATCGGGCCGATCCTCGGCTTGTGCATTCTGCCTCTTCGATCGGCTGAGCGACTGCTCGCC
* *
36287480 CGTTTCATAGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
66 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
* * *
36287545 TTGTGGCAGTGGGACTGGCAGCACGCAGA-AGAGGATCGGGCCGAACCCC-AGCTTGCGCATTAT
131 TTGTGGCAGTAGGACTGGCAGCACGCAGAGAG-GGATCGGGCCGATCCCCGA-CTTACGCATTAT
* * * * *
36287608 GCCTCTTTGGTCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCA
194 GCCTCTCTGATCGGCTCAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * *
36287673 TT-CTAGTCTAAGCTCAGACCAGACTGAAGGTTACGGTAGTAGGACCAGTAGCAGGATTGACAGC
259 TTCCCAGTCTAAGATC-G----GAC-------TA-GGT-G-CGG--C---AGCAGGATCGACTGC
* * * * * * ** ** * * *
36287737 ATGTAGGG-GGGATCAGGCCAATCCTCAGCTTGCGCATTCTGCCTCTCCGCCCGGTTGAGCGCCC
304 ATGCAGGGTGGTATCGGGCCGATCTTCGGCTTATGCATTCTGCCTCTCCGGTCGGCTAAGCACCC
** * *
36287801 GTACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTT
369 ACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTT
* * * * ** * **
36287866 CATTCCTAGTCTAAGATCAGATCGGATCAAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCGGTA
434 CATTCCTAGTCTAAGCTCAGACCAGATCGAGGGTTGCGACAGTAGGACCAGCAGCAGGATCGACA
* * * * * * * * * *
36287931 GCACGCAGGGGGGACCGGGCCAATCCCTGGCTTGTGCATTCTGCCTC-TTCGATCGGCTGAGCGC
499 ACACGCAGAGGGGACCGGGTCGATCCTTGGCTTGCGCATTATACCTCTTTCGCT-GGCTCAGCGC
* * * *
36287995 CCGCACGCTCGTTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCC
563 CCGTACGCTCGTTTCGTGGGTTGACTTATGCATACGG-GTTCATTCC
36288042 ATGTCTAAGC
Statistics
Matches: 1388, Mismatches: 186, Indels: 50
0.85 0.11 0.03
Matches are distributed among these distances:
976 4 0.00
977 635 0.46
978 227 0.16
980 1 0.00
982 3 0.00
986 238 0.17
987 1 0.00
989 2 0.00
991 2 0.00
992 1 0.00
993 2 0.00
995 1 0.00
996 4 0.00
997 239 0.17
998 28 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (979 bp):
GGGGGATCGGGCCGATCCTCGGCTTGTGCATTCTGCCTCTTCGATCGGCTGAGCGACTGCTCGCC
CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
TTGTGGCAGTAGGACTGGCAGCACGCAGAGAGGGATCGGGCCGATCCCCGACTTACGCATTATGC
CTCTCTGATCGGCTCAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCGGACTAGGTGCGGCAGCAGGATCGACTGCATGCAGGGTGGTATCGGGCCGA
TCTTCGGCTTATGCATTCTGCCTCTCCGGTCGGCTAAGCACCCACACGCTCGTTTCGTGGGTTGG
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGCTCAGAC
CAGATCGAGGGTTGCGACAGTAGGACCAGCAGCAGGATCGACAACACGCAGAGGGGACCGGGTCG
ATCCTTGGCTTGCGCATTATACCTCTTTCGCTGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTG
ACTTATGCATACGGGTTCATTCCCAATCTAAGATCAGACCGAATCAAGGGCTACGACAGTAGGAT
CAACAGCACACAAGGGGGATCAGGCCGATCCCCAACTTGCACATTCTGCCTCTCCAGCTAGCTGA
GCACCCGCACACCCGTTTCATGGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCA
GTCGGACCAAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGGGGACCGGGCCGATCCCTGGC
TTGCGAATTATGCCTCTTCGACCGGCTCAACACCCGCACACTCATTTCGTGGGTTGACTTAGGCA
TACGAAGTTCATTCCCAGTCTAAGATCAGACTATACGAGGGTTCCAACAGCAGGATCGGTAGCAC
GCAG
Found at i:36287493 original size:157 final size:158
Alignment explanation
Indices: 36287132--36287526 Score: 363
Period size: 157 Copynumber: 2.5 Consensus size: 158
36287122 TTGCACATTC
* * * * * * * **
36287132 TGCCTCTTCGATCGGCTTAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGCCATAGGGAGTTC
1 TGCCTCTCCGATCGGCTCAACGCTCGCACACCCGTTTCATAGGTTGACTTAGGCATACAGAGTTC
** * *** * *
36287197 ATTCCATGTCTAAGCCCCA--TTCGGACCGAGGGTTGT-GGTAGTGGGATCGGTAGCTCGCAGAG
66 ATTCCATGTCTAAG-ATCAGGTT-GTA-CGAGGGTT-TCAACAGTAGGATCGGTAGCACGCAGAG
* *
36287259 GGGGACTGGGCCGATCCCTGGCTTGCGAATTA
127 GGGGACTGGGCCGATCCCCGACTTGCGAATTA
* * * * *
36287291 TGCCTCTTCGATTGGCTCAACGCTCGCACACTCGTTTCGTTGGTTGACTTAGGCATACAGAGTTC
1 TGCCTCTCCGATCGGCTCAACGCTCGCACACCCGTTTCATAGGTTGACTTAGGCATACAGAGTTC
36287356 ATTCCCA-GTCTAAGATCAGGTTGTACGAGGGTTTCAACAGTAGGATCGGTAGCACGCAG-GGGG
66 ATT-CCATGTCTAAGATCAGGTTGTACGAGGGTTTCAACAGTAGGATCGGTAGCACGCAGAGGGG
* * *
36287419 GA-TCGGGCCGATCCCCGACTTGTGCATTC
130 GACT-GGGCCGATCCCCGACTTGCGAATTA
* ** * * * **
36287448 TGCCTCTCCGATCGGCTGAGTGACT-GCTCACCCGTTTCATAGGTTGGCTTAGGTATAGGGAGTT
1 TGCCTCTCCGATCGGCTCAACG-CTCGCACACCCGTTTCATAGGTTGACTTAGGCATACAGAGTT
36287512 CATTCCATGTCTAAG
65 CATTCCATGTCTAAG
36287527 CCCCAGCCAG
Statistics
Matches: 192, Mismatches: 37, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
156 4 0.02
157 86 0.45
158 31 0.16
159 66 0.34
160 5 0.03
ACGTcount: A:0.18, C:0.26, G:0.29, T:0.27
Consensus pattern (158 bp):
TGCCTCTCCGATCGGCTCAACGCTCGCACACCCGTTTCATAGGTTGACTTAGGCATACAGAGTTC
ATTCCATGTCTAAGATCAGGTTGTACGAGGGTTTCAACAGTAGGATCGGTAGCACGCAGAGGGGG
ACTGGGCCGATCCCCGACTTGCGAATTA
Found at i:36287652 original size:159 final size:157
Alignment explanation
Indices: 36287098--36287685 Score: 515
Period size: 159 Copynumber: 3.7 Consensus size: 157
36287088 ACAGTACACA
* * * * * * *
36287098 AGGGGGATCAGGTCGATCCTCGGCTTGCACATTCTGCCTCTTCGATCGGCTTAGCGCCCGCACAC
1 AGGGGGATCGGGCCGATCC-CCGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCACCCGCACAC
* * * * ** *
36287163 CCGTTTCATGGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCATTCGGACCGAGG
65 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCCCCAGCCAGACCGAGG
* *
36287228 GTTGTGGTAGTGGGATCGGTAGCTCGCAG
129 GTTGTGGCAGTGGGATCGGTAGCACGCAG
* * * * * *
36287257 AGGGGGA-CTGGGCCGATCCCTGGCTTGCGAATTATGCCTCTTCGATTGGCTCAACGCTCGCACA
1 AGGGGGATC-GGGCCGATCCC-CGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCACCCGCACA
* * * ** ***
36287321 CTCGTTTCGTTGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-ATCAGGTTGTA-CGA
64 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCCCCAGCCAG-ACCGA
** *
36287384 GGGTT-TCAACAGTAGGATCGGTAGCACGCAG
127 GGGTTGT-GGCAGTGGGATCGGTAGCACGCAG
* * * * * * *
36287415 -GGGGGATCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGATCGGCTGAGTGA-CTGCTCA
1 AGGGGGATCGGGCCGATCCCCG-CTTGCGCATTATGCCTCTTCGATCGGCTCAG-CACCCGCACA
* * * * *
36287478 CCCGTTTCATAGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAG
64 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCCCCAGCCAGACCGAG
*
36287543 GGTTGTGGCAGTGGGA-CTGGCAGCACGCAG
128 GGTTGTGGCAGTGGGATC-GGTAGCACGCAG
* * * * * *
36287573 AAGAGGATCGGGCCGAACCCCAGCTTGCGCATTATGCCTCTTTGGTCGGCTCAGCACCCGCACGC
1 AGGGGGATCGGGCCGATCCCC-GCTTGCGCATTATGCCTCTTCGATCGGCTCAGCACCCGCACAC
* * * *
36287638 TCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCTAGTCTAAGC
65 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGC
36287686 TCAGACCAGA
Statistics
Matches: 335, Mismatches: 78, Indels: 33
0.75 0.17 0.07
Matches are distributed among these distances:
156 4 0.01
157 86 0.26
158 72 0.21
159 169 0.50
160 4 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.26
Consensus pattern (157 bp):
AGGGGGATCGGGCCGATCCCCGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCACCCGCACACT
CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCCCCAGCCAGACCGAGGGT
TGTGGCAGTGGGATCGGTAGCACGCAG
Found at i:36287716 original size:316 final size:317
Alignment explanation
Indices: 36285986--36287855 Score: 1034
Period size: 316 Copynumber: 5.8 Consensus size: 317
36285976 TCGATCCTTG
* * * * * ** * * *
36285986 GCTTGCGCATTATACCTCTTCGGCCAGCTTAGTGCCCGTACACTCATTTCGTGGGTTGACTTATG
1 GCTTGCGCATTATGCCTCTTTGGTCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATG
* * * * * * * ***
36286051 CATACAG-GTTCATTCCCAATCTAAGATCGGAC-CGAATCGAGGGTTACGACAGTAGGATCAACA
66 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACT-GAAGGTTACGATAGTAGGATCGGTA
** * * * * *
36286114 GCACGTAAGGGGGATCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCC-AGCTAGCTGAGC-A
130 GCACACAAGGGGGATCAGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGATC-GGCTGAGCGA
* * * *
36286177 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
194 -CCGCACACCCGTTTCATAGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * * * * * **
36286242 GGACCAAGGGTTGTGGCAGCGGGA-CTGGCAGCACGCAGAGGGGGACCGGGCCGATCCCTG
258 AGACCGAGGGTTGTGGCAGTGGGATC-GGCAGCACGCAGAAGAGGACTGGGCCGAACCCCA
* ** * * * *
36286302 GCTTGCGCATTATGCCTCTTCGACCGGCTTAGCACCCGCACACTCATTTCGTGGGTTGACTTAGG
1 GCTTGCGCATTATGCCTCTTTGGTCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATG
* * * * * *
36286367 CATACGAAGTTCATTCCCAGTCTAAGATCAGACTATAC-GAGGGTTCCGACAGCAGGATCGGTAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAAGGTTACGATAGTAGGATCGGTAG
* * ** * * ** * * *
36286431 CACGC-AGGGGGATCGGGTTGATCCTCGGCTTGTGCATTCTGCCTCTTCGATCGGCTGAGCGGCT
131 CACACAAGGGGGATCAGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGATCGGCTGAGCGACC
* * * * * *
36286495 GCTCGCCCGTTTCATGGGTTGGCCTAGGCATAGGGAGTCCATTCCATGTCTAAGCCCCAGCCAGA
196 GCACACCCGTTTCATAGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA
* ** * *
36286560 CTGAGGGTTGTGGCAGCAGGA-CTGGCAGCACGCAG-AGAGGGATTGGGCCGATCCCC-
261 CCGAGGGTTGTGGCAGTGGGATC-GGCAGCACGCAGAAGA-GGACTGGGCCGAACCCCA
* * ** * * * ** * * * ** * *
36286616 GACTTACGCATTATGCTTCTCCGATCAGCTCAACGGCTGCACACTCATTTTATGGGTTGACGTAG
1 G-CTTGCGCATTATGCCTCTTTGGTCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAT
* * * *
36286681 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAG--TG-CGG---C---AGCAGGATCGACT
65 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAAGGTTACGATAGTAGGATCG-GT
** * ** * *** * *
36286737 -GCATGC-AGGGTGGTATCGGGCCGATCTTCGGCTTATGCATTCTGCCTCTCCGGTCGGCTAAGC
129 AGCACACAAGGG-GG-ATCAGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGATCGGCTGAGC
* * * * *
36286800 -ACC-CACATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC
192 GACCGCACA--CCCGTTTCATAGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGC---C
** * ** * ** * * * *
36286863 GGAGTTCATTCCTAGTCTAAGCTCAGACCAGATCGAGGGTTGCGACAGTAGGACCAGCAGCAGGA
252 CCAG-CCAGACCGAGGGT-TG-T--G-GCAG-T---GGGAT-CG---GCA-G--CA-C-GCA-G-
* * * ***
36286928 TCGACAACACGCAGAGGGGACCGGGTCGATCCTTG
296 --------A---AGA--GGACTGGGCCGAACCCCA
* * * *
36286963 GCTTGCGCATTATACCTCTTTTG-CTGGCTCAGCACCCGTACGCTCGTTTCGTGGGTTCACTTAT
1 GCTTGCGCATTATGCCTCTTTGGTC-GGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAT
* * * * * * **
36287027 GCATACGG-GTTCGTTCCCAATCTAAGATCAGATTGGA-TCAAGGGCTACGATAGTAGGATCGAC
65 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAA-GGTTACGATAGTAGGATCGGT
* * * * * * *
36287090 AGTACACAAGGGGGATCAGGTCGATCCTCGGCTTGCACATTCTGCCTCTTCGATCGGCTTAGCGC
129 AGCACACAAGGGGGATCAGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGATCGGCTGAGCGA
* ** *
36287155 CCGCACACCCGTTTCATGGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCATTCG
194 CCGCACACCCGTTTCATAGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * * * * **
36287220 GACCGAGGGTTGTGGTAGTGGGATCGGTAGCTCGCAGAGGGGGACTGGGCCGATCCCTG
259 GACCGAGGGTTGTGGCAGTGGGATCGGCAGCACGCAGAAGAGGACTGGGCCGAACCCCA
* * * * * * * * * *
36287279 GCTTGCGAATTATGCCTCTTCGATTGGCTCAACGCTCGCACACTCGTTTCGTTGGTTGACTTAGG
1 GCTTGCGCATTATGCCTCTTTGGTCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATG
* * * * * * *
36287344 CATACAGAGTTCATTCCCAGTCTAAGATCAG-GTTGTAC-GAGGGTTTCAACAGTAGGATCGGTA
66 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTAG-ACTGAAGGTTACGATAGTAGGATCGGTA
* * * ** *
36287407 GCACGCAGGGGGGATCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGATCGGCTGAGTGAC
130 GCACACAAGGGGGATCAGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGATCGGCTGAGCGAC
* * **
36287472 TGCTCACCCGTTTCATAGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
195 CGCACACCCGTTTCATAGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
36287537 ACCGAGGGTTGTGGCAGTGGGA-CTGGCAGCACGCAGAAGAGGA-TCGGGCCGAACCCCA
260 ACCGAGGGTTGTGGCAGTGGGATC-GGCAGCACGCAGAAGAGGACT-GGGCCGAACCCCA
*
36287595 GCTTGCGCATTATGCCTCTTTGGTCGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTATG
1 GCTTGCGCATTATGCCTCTTTGGTCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATG
* * * * * *
36287660 CATACGGAGTTCATT-CTAGTCTAAGCTCAGACCAGACTGAAGGTTACGGTAGTAGGACCAGTAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAAGGTTACGATAGTAGGATCGGTAG
* * * **
36287724 CAGGATTGACAGCATGTAGGGGGGATCAGGCCAATCCTC-AGCTTGCGCATTCTGCCTCTCCGCC
131 C-------ACA-CA---A-GGGGGATCAGGCCGATCCCCGA-CTTGCACATTCTGCCTCTCCGAT
* * * * * * * *
36287788 CGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAAG-CATACGGAGTTCATTCCATGTCT
183 CGGCTGAGCGACCGCACACCCGTTTCATAGGTTGGCTT-AGCCATAGGGAGTTCATTCCATGTCT
36287852 AAGC
247 AAGC
36287856 ATATGGAGTT
Statistics
Matches: 1202, Mismatches: 265, Indels: 162
0.74 0.16 0.10
Matches are distributed among these distances:
307 21 0.02
308 4 0.00
309 87 0.07
310 1 0.00
312 3 0.00
313 8 0.01
314 4 0.00
315 252 0.21
316 423 0.35
317 47 0.04
318 5 0.00
321 1 0.00
322 2 0.00
323 3 0.00
324 3 0.00
326 2 0.00
327 2 0.00
328 90 0.07
329 4 0.00
330 2 0.00
331 6 0.00
332 2 0.00
333 1 0.00
335 1 0.00
336 3 0.00
339 2 0.00
340 4 0.00
343 1 0.00
344 2 0.00
345 28 0.02
346 63 0.05
347 2 0.00
348 3 0.00
349 7 0.01
350 2 0.00
351 1 0.00
353 86 0.07
354 16 0.01
355 8 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (317 bp):
GCTTGCGCATTATGCCTCTTTGGTCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAAGGTTACGATAGTAGGATCGGTAG
CACACAAGGGGGATCAGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGATCGGCTGAGCGACC
GCACACCCGTTTCATAGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA
CCGAGGGTTGTGGCAGTGGGATCGGCAGCACGCAGAAGAGGACTGGGCCGAACCCCA
Found at i:36287854 original size:26 final size:26
Alignment explanation
Indices: 36287825--36287880 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
36287815 TGGGTTGGCT
36287825 TAAGCATACGGAGTTCATTCC-ATGTC
1 TAAGCATACGGAGTTCATTCCTA-GTC
*
36287851 TAAGCATATGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATTCCTAGTC
36287877 TAAG
1 TAAG
36287881 ATCAGATCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCTAGTC
Found at i:36288009 original size:196 final size:195
Alignment explanation
Indices: 36287659--36288051 Score: 529
Period size: 196 Copynumber: 2.0 Consensus size: 195
36287649 GTTGACTTAT
* * * *
36287659 GCATACGGAGTTCATTCTAGTCTAAGCTCAGACCAGACTGAAGGTTACGGTAGTAGGACCAGTAG
1 GCATACGGAGTTCATTCTAGTCTAAGATCAGACCAGACTCAAGGTTACGGTAGCAGGACCAGCAG
* * * * *
36287724 CAGGATTGACAGCATGTAGGGGGGATCAGGCCAATCCTCAGCTTGCGCATTCTGCCTCTCCGCCC
66 CAGGATCGACAGCACGCAGGGGGGACCAGGCCAATCCTCAGCTTGCGCATTCTGCCTCTCCGACC
* * *
36287789 GGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAA
131 GGCTGAGCGCCCGCACGCTCGTTTCGTGAGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAA
* * * *
36287854 GCATATGGAGTTCATTCCTAGTCTAAGATCAGATCGGA-TCAAGGGTTGCGGTAGCAGGACCAGC
1 GCATACGGAGTTCATT-CTAGTCTAAGATCAGACCAGACTCAA-GGTTACGGTAGCAGGACCAGC
** * * * *
36287918 AGCAGGATCGGTAGCACGCAGGGGGGACCGGGCCAATCC-CTGGCTTGTGCATTCTGCCTCTTCG
64 AGCAGGATCGACAGCACGCAGGGGGGACCAGGCCAATCCTC-AGCTTGCGCATTCTGCCTCTCCG
* *
36287982 ATCGGCTGAGCGCCCGCACGCTCGTTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
128 ACCGGCTGAGCGCCCGCACGCTCGTTTCGTGAGTTGGCTTAAGCATACGGAGTTCATTCCATGTC
36288047 TAA
193 TAA
36288050 GC
1 GC
36288052 CCCAACCGGA
Statistics
Matches: 171, Mismatches: 24, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
195 19 0.11
196 152 0.89
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (195 bp):
GCATACGGAGTTCATTCTAGTCTAAGATCAGACCAGACTCAAGGTTACGGTAGCAGGACCAGCAG
CAGGATCGACAGCACGCAGGGGGGACCAGGCCAATCCTCAGCTTGCGCATTCTGCCTCTCCGACC
GGCTGAGCGCCCGCACGCTCGTTTCGTGAGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAA
Found at i:36288240 original size:170 final size:170
Alignment explanation
Indices: 36287854--36288259 Score: 442
Period size: 170 Copynumber: 2.4 Consensus size: 170
36287844 CCATGTCTAA
* * *
36287854 GCATATGGAGTTCATTCCTAGTCTAAGATCAGATCGGATCAAGGGTTGCGGTAGCAGGACC-AGC
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGTAGCAGGACCGA-C
* * * *** * * *
36287918 AGCAGGATCGGTAGCACGCAGGGGGGACCGGGCCAATCCCTGGCTTGTGCATTCTGCCTCTTCGA
65 AGCAGGATCAGCAGCACGCAGGGGGGACCAGGCCAATCCCCAACTTATGCATTATGCCTCTCCGA
* * *
36287983 TCGGCTGAGCGCCCGCACGCTCGTTTCGTGAGTTGGCTTAG
130 TCGACTGAGCGCCCGCACGCTCGTTTCATGAGTTGACTTAG
* ** * * *
36288024 GCATACGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGATTGAGGGTTGTGGCAGCAGGACCGA
1 GCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGATCGAGGGTTGTGGTAGCAGGACCGA
* * **
36288087 CAGTAGGATCAGCAGC-CGCAGAGGGGGATCAGGCTGATCCCCAACTTATGCATTATGCCTCTCC
64 CAGCAGGATCAGCAGCACGCAG-GGGGGACCAGGCCAATCCCCAACTTATGCATTATGCCTCTCC
* * * *
36288151 GATCGACTGAGCGTCTGCATGCTCGTTTCATGGGTTGACTTAG
128 GATCGACTGAGCGCCCGCACGCTCGTTTCATGAGTTGACTTAG
* * * * *
36288194 GCATATGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTGTAGTAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGTAGCAGGACCGACA
36288259 G
66 G
36288260 AACGTAGGAG
Statistics
Matches: 190, Mismatches: 40, Indels: 12
0.79 0.17 0.05
Matches are distributed among these distances:
169 8 0.04
170 176 0.93
171 6 0.03
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.23
Consensus pattern (170 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGTAGCAGGACCGACA
GCAGGATCAGCAGCACGCAGGGGGGACCAGGCCAATCCCCAACTTATGCATTATGCCTCTCCGAT
CGACTGAGCGCCCGCACGCTCGTTTCATGAGTTGACTTAG
Found at i:36288318 original size:21 final size:21
Alignment explanation
Indices: 36288289--36288328 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
36288279 CGATCCCCGG
*
36288289 CTTATGCATTCTGCCTCTCGA
1 CTTACGCATTCTGCCTCTCGA
36288310 CTTACGCATTCTGCCTCTC
1 CTTACGCATTCTGCCTCTC
36288329 TGGCCGGCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.38, G:0.12, T:0.38
Consensus pattern (21 bp):
CTTACGCATTCTGCCTCTCGA
Found at i:36288598 original size:26 final size:26
Alignment explanation
Indices: 36288568--36288620 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36288558 GTTGGCTTAG
*
36288568 GCATATGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
36288594 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
36288620 G
1 G
36288621 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:36288710 original size:195 final size:193
Alignment explanation
Indices: 36288308--36288788 Score: 590
Period size: 195 Copynumber: 2.5 Consensus size: 193
36288298 TCTGCCTCTC
* * *
36288308 GACTTACGCATTCTGCCTCTCTGGCCGGCTAAGTGCCCGCACGCTCATTTCATGGGTTGGCTTCG
1 GACTTATGCATTCTGCCTCTCTGGCC-GCTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAG
* * * * *
36288373 GCATACAGAGTCCATTCCATGTCTAAGCATACGAAGTTCATTCCAAGTCTAACCCTAAACAGATC
65 GCATAGA-AGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCAAGTCTAAACCGAAACAGACC
* * * * *
36288438 GAGGGTTGTGGCAGTAGGACCAGCAGCAGGATCGACAGCACGTAGGGGGGACCGGGCCAATCCTT
129 GAGGGTTGCGGCAGTAGGACCAACAACAAGATCGACAGCACGCAGGGGGGACCGGGCCAATCCTT
*
36288503 GACTTATGCATTCTGCCT-TTTCGGCCAGCTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTA
1 GACTTATGCATTCTGCCTCTCT-GGCC-GCTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTA
* * * *
36288567 GGCATATGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGA
64 GGCATA-GAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCAAGTCTAA-ACCGAAACAGA
* ** ** *
36288632 CCGAGGGTTGCGGTAGTAGGACCAACAACAAGATCGGTAGCACGCAGGGGGGATTGGGCCGATCC
127 CCGAGGGTTGCGGCAGTAGGACCAACAACAAGATCGACAGCACGCAGGGGGGACCGGGCCAATCC
36288697 TT
192 TT
* * * * ** *
36288699 G-CTTGTGCATTCTGCCTCTCTGGTCGGTGAA-CACCCGCACGCTTGTTTCATGAGTTGGCTTAG
1 GACTTATGCATTCTGCCTCTCTGGCCGCT-AAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAG
*
36288762 GCATAGGAGTTCATTCCATGTCTAAGC
65 GCATAGAAGTTCATTCCATGTCTAAGC
36288789 CCCAGCCGGA
Statistics
Matches: 247, Mismatches: 34, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
193 21 0.09
194 37 0.15
195 124 0.50
196 65 0.26
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (193 bp):
GACTTATGCATTCTGCCTCTCTGGCCGCTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGG
CATAGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCAAGTCTAAACCGAAACAGACCGA
GGGTTGCGGCAGTAGGACCAACAACAAGATCGACAGCACGCAGGGGGGACCGGGCCAATCCTT
Found at i:36289434 original size:26 final size:26
Alignment explanation
Indices: 36289405--36289457 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
36289395 GTTGGCTTAG
*
36289405 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
36289431 GCATGCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
36289457 G
1 G
36289458 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:36291154 original size:26 final size:26
Alignment explanation
Indices: 36291124--36291176 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
36291114 GTTGACTTAG
36291124 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
36291150 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
36291176 G
1 G
36291177 ATCAAACTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:36291441 original size:159 final size:158
Alignment explanation
Indices: 36291229--36291811 Score: 557
Period size: 159 Copynumber: 3.7 Consensus size: 158
36291219 GCAGGGTGGG
* * * * * * ** *
36291229 CCGGGCCGATCCCTGTCTTGCGCATTTTGCCTCTCCGGTCGGTTGAGCACCCGCACACCCGTTTC
1 CCGGGCCGATCCC-GACTTACGCATTCTGCCTCTTCAGTCGGCTGAGTGCCCGCACGCCCGTTTC
36291294 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGG
65 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGG
* * *
36291359 TAGCGGGACCGACAGCACGTCGAGGGGGG
130 CAGCGGGATCGACAGCACGTCGAGGGGGA
* * * * * *
36291388 CCGGGCCAATCCTCGACTTACGCATTATGCCTCTTCAGTCGGCTCAGTGCCCGCATGCTCATTTC
1 CCGGGCCGATCC-CGACTTACGCATTCTGCCTCTTCAGTCGGCTGAGTGCCCGCACGCCCGTTTC
* * ** * * *
36291453 GTGAGTTGACTTAGGCATAGGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACCGAGGGTTGC
65 GTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCAAGGGTTGT
* * * * *
36291516 GACAGCAGGATCAACAGTACG-CAATGGGGGA
128 GGCAGCGGGATCGACAGCACGTCGA-GGGGGA
* * * ** * * ** *
36291547 TCGAGCTGATCCCCGTTTTACGCATTCTGCCTCTT-TGACCGGCTGAGTGCTTGCACGTCCGTTT
1 CCGGGCCGAT-CCCGACTTACGCATTCTGCCTCTTCAG-TCGGCTGAGTGCCCGCACGCCCGTTT
* *
36291611 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC-GATCGAAGGGTTGT
64 CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA-CCAAGGGTTGT
* * *
36291675 GGCAGCGGGATAG-CAACACGTAGAGGGGGA
128 GGCAGCGGGATCGACAGCACGTCGAGGGGGA
* * * * * * **
36291705 CCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTTGTTTC
1 CCGGGCCGATCCC-GACTTACGCATTCTGCCTCTTCAGTCGGCTGAGTGCCCGCACGCCCGTTTC
*
36291770 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
36291812 ATACAAAGTT
Statistics
Matches: 332, Mismatches: 80, Indels: 25
0.76 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 104 0.31
159 216 0.65
160 9 0.03
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
CCGGGCCGATCCCGACTTACGCATTCTGCCTCTTCAGTCGGCTGAGTGCCCGCACGCCCGTTTCG
TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGC
AGCGGGATCGACAGCACGTCGAGGGGGA
Found at i:36292182 original size:26 final size:26
Alignment explanation
Indices: 36292153--36292202 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
36292143 GGCTTAGGCG
36292153 TACGGAGTTCATTCC-ATGTCTAAGCA
1 TACGGAGTTCATTCCTA-GTCTAAGCA
36292179 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCTAGTCTAAG
36292203 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCTAGTCTAAGCA
Found at i:36293435 original size:26 final size:26
Alignment explanation
Indices: 36293399--36293451 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36293389 GTTGGCTTAG
36293399 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
36293425 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
36293451 G
1 G
36293452 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:36293919 original size:26 final size:26
Alignment explanation
Indices: 36293881--36293933 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
36293871 GTTGGCTTAG
36293881 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
36293907 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
36293933 G
1 G
36293934 ATTTTGTGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:36294016 original size:11 final size:11
Alignment explanation
Indices: 36294000--36294039 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
36293990 TGGCTGGGGG
36294000 AGCATCACCGA
1 AGCATCACCGA
*
36294011 AGCATCACCGG
1 AGCATCACCGA
*
36294022 AGCATCACCAA
1 AGCATCACCGA
36294033 AGCATCA
1 AGCATCA
36294040 TCGGAGAGCC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.38, C:0.35, G:0.17, T:0.10
Consensus pattern (11 bp):
AGCATCACCGA
Found at i:36294026 original size:22 final size:22
Alignment explanation
Indices: 36293998--36294045 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
36293988 TTTGGCTGGG
*
36293998 GGAGCATCACCGAAGCATCACC
1 GGAGCATCACCAAAGCATCACC
*
36294020 GGAGCATCACCAAAGCATCATC
1 GGAGCATCACCAAAGCATCACC
36294042 GGAG
1 GGAG
36294046 AGCCTAACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.33, C:0.31, G:0.25, T:0.10
Consensus pattern (22 bp):
GGAGCATCACCAAAGCATCACC
Found at i:36294653 original size:26 final size:26
Alignment explanation
Indices: 36294623--36294675 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36294613 GTTGACTTAG
* *
36294623 GCATATGGCGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
36294649 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
36294675 G
1 G
36294676 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:36295122 original size:26 final size:26
Alignment explanation
Indices: 36295092--36295145 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
36295082 GTTGGCTTAG
36295092 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
36295118 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
36295144 GC
1 GC
36295146 TCAGACCGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:36296141 original size:196 final size:195
Alignment explanation
Indices: 36295860--36296406 Score: 494
Period size: 196 Copynumber: 2.9 Consensus size: 195
36295850 CTGAGGGTTG
* * * ** *
36295860 CAGCAGCAGGATCAACAGCACGTAAGGGGATCGGGCCGATCCTCGGCTTTTGCATTCTACCTTTC
1 CAGCAACAGGATCAACAGCACGCAAGGGGATCGGGCCGATCCCCGGCTTACGCATTCTACCTCTC
* * * * * *
36295925 CGATCGGTTGAGCGCCCGCACGCTTGTTTCCTAGGTTGGCTTAGGCATACCTAGTTCAT-TCCAT
66 CGACCGGCTGAGCGCCCGCACGCTTGTTTCATAGGTTGACTTAGGCATACCGAGTTCATCCCCA-
* *
36295989 GTCTAAGCCA-ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGCTTGCTGCAGCAGG
130 GTCTAAG-CATACAGAGTCCATTCCCAGTCTAAGATCGGATCGGACCAAGGCTTGCTGCAGCAGG
36296053 AC
194 AC
* * *
36296055 CAGCAACAGGATCGACAGCACGCAAGGGGGATCGGGCCGATCCCCGGCTTACGTATTCTGCCTCT
1 CAGCAACAGGATCAACAGCACGCAA-GGGGATCGGGCCGATCCCCGGCTTACGCATTCTACCTCT
* * *
36296120 CCGACCGGCTGAGTGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
65 CCGACCGGCTGAGCGCCCGCACGCTTGTTTCATAGGTTGACTTAGGCATACCGAGTTCATCCCCA
* * * ** *
36296185 GTCTAAGCATACAGAGTCCATTTCCAGTCTAAGATCGAACCGGACTGAGG---G-T--TGC--GA
130 GTCTAAGCATACAGAGTCCATTCCCAGTCTAAGATCGGATCGGACCAAGGCTTGCTGCAGCAGGA
36296242 -
195 C
* ** * * * * * * * **
36296242 TAG---CAGGATCGGCAGCACGCAGGGGGGACCGGGCCAATCCCTGAG-TTGCACATTTTGTCTC
1 CAGCAACAGGATCAACAGCACGCA-AGGGGATCGGGCCGATCCCCG-GCTTACGCATTCTACCTC
* * * * * * *
36296303 TTCGACTGGCTGAGCACCCGCACGCTCGTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCC
64 TCCGACCGGCTGAGCGCCCGCACGCTTG-TTTCATAGGTTGACTTAGGCATACCGAGTTCATCCC
* * * *
36296368 TAGTCTAAGCATACGGAGTTCATTCCCAGTCGAAGATCG
128 CAGTCTAAGCATACAGAGTCCATTCCCAGTCTAAGATCG
36296407 AACCAGACTG
Statistics
Matches: 298, Mismatches: 48, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
184 68 0.23
185 70 0.23
187 2 0.01
188 2 0.01
190 2 0.01
192 1 0.00
193 1 0.00
195 24 0.08
196 125 0.42
197 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.23
Consensus pattern (195 bp):
CAGCAACAGGATCAACAGCACGCAAGGGGATCGGGCCGATCCCCGGCTTACGCATTCTACCTCTC
CGACCGGCTGAGCGCCCGCACGCTTGTTTCATAGGTTGACTTAGGCATACCGAGTTCATCCCCAG
TCTAAGCATACAGAGTCCATTCCCAGTCTAAGATCGGATCGGACCAAGGCTTGCTGCAGCAGGAC
Found at i:36296195 original size:26 final size:26
Alignment explanation
Indices: 36296165--36296217 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
36296155 GTTGACTTAG
* *
36296165 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTCCATCCCCAGTCTAA
**
36296191 GCATACAGAGTCCATTTCCAGTCTAA
1 GCATACAGAGTCCATCCCCAGTCTAA
36296217 G
1 G
36296218 ATCGAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTCCATCCCCAGTCTAA
Found at i:36296375 original size:185 final size:184
Alignment explanation
Indices: 36296056--36296549 Score: 562
Period size: 185 Copynumber: 2.7 Consensus size: 184
36296046 CAGCAGGACC
* * * * **
36296056 AGCAACAGGATCGACAGCACGCAAGGGGGATCGGGCCGATCCCCGGCTTACGTATTCTGCCTCTC
1 AGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTACACATTCTGCCTCTC
** *
36296121 CGACCGGCTGAGTGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAG
66 CGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAG
* * *
36296186 TCTAAGCATACAGAGTCCATTTCCAGTCTAAGATCGAACCGGACTGAGGGTTGCG
131 TCTAAGCATACAGAGTCCATTCCCAGTCGAAGATCGAACCAGACTGAGGGTTG-G
* * * * * *
36296241 A-TAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCAATCCCTGAG-TTGCACATTTTGTCTCT
1 AGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCG-GCTTACACATTCTGCCTCT
* * * *
36296304 TCGACTGGCTGAGCACCCGCACGCTCGTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCT
65 CCGACCGGCTGAGCACCCGCACGCTCG-TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC
* * *
36296369 AGTCTAAGCATACGGAGTTCATTCCCAGTCGAAGATCGAACCAGACTGAGGGTTGT
129 AGTCTAAGCATACAGAGTCCATTCCCAGTCGAAGATCGAACCAGACTGAGGGTTGG
* * * *** *
36296425 AGCAGCAGGAATCGGTAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGTGCATTCTAACCTC
1 AGCAGCAGG-ATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTACACATTCT-GCCTC
* * * ** * * *
36296490 TCCGGCCGGTTGAGCGCCCGCACGC-CCATTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
64 TCCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
36296550 TCCATGTATA
Statistics
Matches: 258, Mismatches: 45, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
184 71 0.28
185 123 0.48
186 41 0.16
187 23 0.09
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.22
Consensus pattern (184 bp):
AGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTACACATTCTGCCTCTC
CGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAG
TCTAAGCATACAGAGTCCATTCCCAGTCGAAGATCGAACCAGACTGAGGGTTGG
Found at i:36297409 original size:34 final size:33
Alignment explanation
Indices: 36297361--36297428 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 33
36297351 GTCTAAGATC
* *
36297361 GGACCGGACTGAGGGTTATGGCAGCACGCAAGGG
1 GGACCGGACCGAGGGTTAAGGCAGCACGC-AGGG
36297395 GGACCGGACCGAGGGTTAAGGCAGCACGCAGGG
1 GGACCGGACCGAGGGTTAAGGCAGCACGCAGGG
36297428 G
1 G
36297429 ATCCTCGGCT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 5 0.16
34 27 0.84
ACGTcount: A:0.24, C:0.22, G:0.46, T:0.09
Consensus pattern (33 bp):
GGACCGGACCGAGGGTTAAGGCAGCACGCAGGG
Done.