Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 41 of 402
Found at i:8131057 original size:12 final size:11
Alignment explanation
Indices: 8131028--8131070 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
8131018 TCTCAAAGAT
8131028 AGAAAGAAAAAA
1 AGAAA-AAAAAA
8131040 AGAAAAAAAAA
1 AGAAAAAAAAA
* *
8131051 AGCAAAACAAA
1 AGAAAAAAAAA
*
8131062 GGAAAAAAA
1 AGAAAAAAA
8131071 GTGAAAAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
11 21 0.81
12 5 0.19
ACGTcount: A:0.81, C:0.05, G:0.14, T:0.00
Consensus pattern (11 bp):
AGAAAAAAAAA
Found at i:8131461 original size:14 final size:13
Alignment explanation
Indices: 8131442--8131520 Score: 56
Period size: 15 Copynumber: 5.8 Consensus size: 13
8131432 ATAATGGGAG
8131442 AAAAATGAAAGAAA
1 AAAAATGAAA-AAA
8131456 AAAAATG---AAA
1 AAAAATGAAAAAA
8131466 AAAAATGAAAAAA
1 AAAAATGAAAAAA
*
8131479 TGAAAAAAGAAAAAAGA
1 --AAAAATG-AAAAA-A
*
8131496 AAAAATAAAAAAA
1 AAAAATGAAAAAA
8131509 GAGAAAATGAAA
1 -A-AAAATGAAA
8131521 TAATGAAATA
Statistics
Matches: 52, Mismatches: 4, Indels: 17
0.71 0.05 0.23
Matches are distributed among these distances:
10 10 0.19
13 4 0.08
14 13 0.25
15 19 0.37
16 5 0.10
17 1 0.02
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.08
Consensus pattern (13 bp):
AAAAATGAAAAAA
Found at i:8131468 original size:8 final size:8
Alignment explanation
Indices: 8131442--8131528 Score: 85
Period size: 8 Copynumber: 11.2 Consensus size: 8
8131432 ATAATGGGAG
8131442 AAAAATGA
1 AAAAATGA
*
8131450 AAGAA--A
1 AAAAATGA
8131456 AAAAATGAAA
1 AAAAATG--A
8131466 AAAAATGA
1 AAAAATGA
8131474 AAAAATGA
1 AAAAATGA
8131482 AAAAA-GA
1 AAAAATGA
8131489 AAAAA-GA
1 AAAAATGA
8131496 AAAAAT-A
1 AAAAATGA
*
8131503 AAAAAAGA
1 AAAAATGA
*
8131511 GAAAATGA
1 AAAAATGA
*
8131519 AATAATGA
1 AAAAATGA
8131527 AA
1 AA
8131529 TAGAAAAGAT
Statistics
Matches: 66, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
6 5 0.08
7 20 0.30
8 33 0.50
10 8 0.12
ACGTcount: A:0.78, C:0.00, G:0.13, T:0.09
Consensus pattern (8 bp):
AAAAATGA
Found at i:8131473 original size:24 final size:24
Alignment explanation
Indices: 8131442--8131493 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 24
8131432 ATAATGGGAG
*
8131442 AAAAATGAAAGAAA-AAAAATGAAA
1 AAAAATGAAA-AAAGAAAAAAGAAA
8131466 AAAAATGAAAAAATGAAAAAAGAAA
1 AAAAATGAAAAAA-GAAAAAAGAAA
8131491 AAA
1 AAA
8131494 GAAAAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 3 0.12
24 10 0.40
25 12 0.48
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.08
Consensus pattern (24 bp):
AAAAATGAAAAAAGAAAAAAGAAA
Found at i:8132345 original size:62 final size:63
Alignment explanation
Indices: 8132245--8132395 Score: 166
Period size: 63 Copynumber: 2.4 Consensus size: 63
8132235 GATCAGTGGG
* * * *
8132245 CAAAATTTATTCTAAAATGGTTAGTGTTGAGTAACCTATAATG-G-TGA-CTAAGTGATGGAGGA
1 CAAAATTTATTCTGAAATGGCTAGTGTTGAGTAACCTATAA-GCGATGATC-AAGTGATAGAAGA
* * * *
8132307 CAAAATTTGTTCTGAAATGACTAGTGTTTAG-AAGCCTATGAGCGATGATCAAGTGATAGAAGA
1 CAAAATTTATTCTGAAATGGCTAGTGTTGAGTAA-CCTATAAGCGATGATCAAGTGATAGAAGA
*
8132370 CAAAATTTATTCTGAGATGGCTAGTG
1 CAAAATTTATTCTGAAATGGCTAGTG
8132396 CTAAAAAGCT
Statistics
Matches: 74, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
61 3 0.04
62 33 0.45
63 37 0.50
64 1 0.01
ACGTcount: A:0.35, C:0.10, G:0.24, T:0.31
Consensus pattern (63 bp):
CAAAATTTATTCTGAAATGGCTAGTGTTGAGTAACCTATAAGCGATGATCAAGTGATAGAAGA
Found at i:8132816 original size:21 final size:22
Alignment explanation
Indices: 8132775--8132841 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 22
8132765 AAATATTTTG
*
8132775 AGTTCTCAAATGAGAAATC-TTA
1 AGTTTTCAAATGAG-AATCTTTA
*
8132797 GGTTTTCAAATGAGAATCTTTA
1 AGTTTTCAAATGAGAATCTTTA
* *
8132819 AGTTTT-AAATAAGAACCTTTA
1 AGTTTTCAAATGAGAATCTTTA
8132840 AG
1 AG
8132842 ACTTTAGATG
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
21 19 0.49
22 20 0.51
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (22 bp):
AGTTTTCAAATGAGAATCTTTA
Found at i:8133372 original size:41 final size:41
Alignment explanation
Indices: 8133278--8133372 Score: 127
Period size: 41 Copynumber: 2.3 Consensus size: 41
8133268 ATTGTCAAGG
* *
8133278 AGCATTTTACTTTTCAAAGTTGTGGTGCCTCTGTTTAAATA
1 AGCATTTTATTTTTCAAAGTTGTAGTGCCTCTGTTTAAATA
* * * *
8133319 AGCGTTTAATTTTTCAAAGTTGTAGTGCCTCTGTTTAGATG
1 AGCATTTTATTTTTCAAAGTTGTAGTGCCTCTGTTTAAATA
*
8133360 AGTATTTTATTTT
1 AGCATTTTATTTT
8133373 ATTTTTTAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.23, C:0.12, G:0.18, T:0.47
Consensus pattern (41 bp):
AGCATTTTATTTTTCAAAGTTGTAGTGCCTCTGTTTAAATA
Found at i:8133449 original size:44 final size:42
Alignment explanation
Indices: 8133396--8133561 Score: 138
Period size: 44 Copynumber: 3.8 Consensus size: 42
8133386 ATGGTGCCTC
8133396 TGGTGCCTCTATTTGAAGGAGCATTTTATTTTTTTAAAAAGTTA
1 TGGTGCCTCTATTT-AAGGAGCATTTTA-TTTTTTAAAAAGTTA
* *
8133440 TGGTGCCTCTATTTAGATGAGCATTTTA-TTTTT-CAAAGTTA
1 TGGTGCCTCTATTTA-AGGAGCATTTTATTTTTTAAAAAGTTA
* * * * *
8133481 TGGTGCTTCTGTTTAAAGGAGCTTAATTTATTTTTCAAAAAGTTG
1 TGGTGCCTCTATTT-AAGGAGC--ATTTTATTTTTTAAAAAGTTA
*** *
8133526 TTAAGCCTCTATTTAGAGGAGCCGTATTTATTTTTT
1 TGGTGCCTCTATTTA-AGGAG-CAT-TTTATTTTTT
8133562 CAAAGTTGTA
Statistics
Matches: 96, Mismatches: 17, Indels: 17
0.74 0.13 0.13
Matches are distributed among these distances:
41 24 0.25
42 6 0.06
43 6 0.06
44 30 0.31
45 29 0.30
46 1 0.01
ACGTcount: A:0.25, C:0.11, G:0.18, T:0.46
Consensus pattern (42 bp):
TGGTGCCTCTATTTAAGGAGCATTTTATTTTTTAAAAAGTTA
Found at i:8133512 original size:43 final size:41
Alignment explanation
Indices: 8133396--8133519 Score: 131
Period size: 41 Copynumber: 2.9 Consensus size: 41
8133386 ATGGTGCCTC
* * *
8133396 TGGTGCCTCTATTTGAAGGAGCATTTTATTTTTTTAAAAAGTTA
1 TGGTGCCTCTATTTAAAGGAGCAATTTA--TTTTT-CAAAGTTA
* * *
8133440 TGGTGCCTCTATTTAGATGAGCATTTTATTTTTCAAAGTTA
1 TGGTGCCTCTATTTAAAGGAGCAATTTATTTTTCAAAGTTA
* *
8133481 TGGTGCTTCTGTTTAAAGGAGCTTAATTTATTTTTCAAA
1 TGGTGCCTCTATTTAAAGGAGC--AATTTATTTTTCAAA
8133520 AAGTTGTTAA
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
41 25 0.36
42 5 0.07
43 14 0.20
44 25 0.36
ACGTcount: A:0.26, C:0.10, G:0.18, T:0.46
Consensus pattern (41 bp):
TGGTGCCTCTATTTAAAGGAGCAATTTATTTTTCAAAGTTA
Found at i:8133547 original size:45 final size:42
Alignment explanation
Indices: 8133444--8133592 Score: 115
Period size: 43 Copynumber: 3.5 Consensus size: 42
8133434 AAGTTATGGT
* * * **
8133444 GCCTCTATTTAGATGAGCAT-TTTA-TTTTTCAAAGTTATGGT
1 GCCTCTATTTAGAGGAGCTTATTTATTTTTTCAAAGTTGT-AA
* * *
8133485 GCTTCTGTTTAAAGGAGCTTAATTTA-TTTTTCAAAAAGTTGTTAA
1 GCCTCTATTTAGAGGAGCTT-ATTTATTTTTTC--AAAGTTG-TAA
*
8133530 GCCTCTATTTAGAGGAGCCGTATTTATTTTTTCAAAGTTGTAA
1 GCCTCTATTTAGAGGAG-CTTATTTATTTTTTCAAAGTTGTAA
* * *
8133573 GTCTCTACTTAGGGGAGCTT
1 GCCTCTATTTAGAGGAGCTT
8133593 TATGTCATTT
Statistics
Matches: 85, Mismatches: 16, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
41 15 0.18
42 2 0.02
43 27 0.32
44 7 0.08
45 25 0.29
46 9 0.11
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.43
Consensus pattern (42 bp):
GCCTCTATTTAGAGGAGCTTATTTATTTTTTCAAAGTTGTAA
Found at i:8133634 original size:1 final size:1
Alignment explanation
Indices: 8133628--8133670 Score: 50
Period size: 1 Copynumber: 43.0 Consensus size: 1
8133618 CTGTTATCAC
* * * *
8133628 AAAAAAAAAAAGAAAAACAAAAACAAAAAAAAAAACAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
8133671 TGTGTCGAGT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.91, C:0.07, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:8133643 original size:6 final size:6
Alignment explanation
Indices: 8133626--8133668 Score: 59
Period size: 6 Copynumber: 7.2 Consensus size: 6
8133616 GTCTGTTATC
* * *
8133626 ACAAAA AAAAAA AGAAAA ACAAAA ACAAAA AAAAAA ACAAAA A
1 ACAAAA ACAAAA ACAAAA ACAAAA ACAAAA ACAAAA ACAAAA A
8133669 AATGTGTCGA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.88, C:0.09, G:0.02, T:0.00
Consensus pattern (6 bp):
ACAAAA
Found at i:8133643 original size:12 final size:12
Alignment explanation
Indices: 8133626--8133670 Score: 72
Period size: 12 Copynumber: 3.8 Consensus size: 12
8133616 GTCTGTTATC
8133626 ACAAAAAAAAAA
1 ACAAAAAAAAAA
* *
8133638 AGAAAAACAAAA
1 ACAAAAAAAAAA
8133650 ACAAAAAAAAAA
1 ACAAAAAAAAAA
8133662 ACAAAAAAA
1 ACAAAAAAA
8133671 TGTGTCGAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (12 bp):
ACAAAAAAAAAA
Found at i:8133649 original size:18 final size:17
Alignment explanation
Indices: 8133626--8133670 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 17
8133616 GTCTGTTATC
8133626 ACAAAAAAAAAAAGAAAA
1 ACAAAAAAAAAAA-AAAA
8133644 ACAAAAACAAAAAAAAAA
1 ACAAAAA-AAAAAAAAAA
8133662 ACAAAAAAA
1 ACAAAAAAA
8133671 TGTGTCGAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 2 0.08
18 18 0.69
19 6 0.23
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (17 bp):
ACAAAAAAAAAAAAAAA
Found at i:8135523 original size:52 final size:51
Alignment explanation
Indices: 8135461--8135593 Score: 142
Period size: 52 Copynumber: 2.6 Consensus size: 51
8135451 AAGAAAAAGG
* **
8135461 AATTTCTAAATAGGCTGAAATGGTAGAAAATTTAGAAATTCTAAAAAAAAAA
1 AATTTCTAAATAGACCCAAATGGTAGAAAATTTAGAAATTC-AAAAAAAAAA
* * * *
8135513 AATTTGTAAATTGACCCAAATGGTGGAGAATTTAGAAATTCAAAATAAAAAA
1 AATTTCTAAATAGACCCAAATGGTAGAAAATTTAGAAATTCAAAA-AAAAAA
* * *
8135565 ATATTTCTAATTTGGCCCAAATGGT-GAAA
1 A-ATTTCTAAATAGACCCAAATGGTAGAAA
8135594 TAATTAGATA
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
51 4 0.06
52 44 0.65
53 20 0.29
ACGTcount: A:0.48, C:0.08, G:0.15, T:0.29
Consensus pattern (51 bp):
AATTTCTAAATAGACCCAAATGGTAGAAAATTTAGAAATTCAAAAAAAAAA
Found at i:8135588 original size:53 final size:52
Alignment explanation
Indices: 8135478--8135590 Score: 156
Period size: 52 Copynumber: 2.2 Consensus size: 52
8135468 AAATAGGCTG
* *
8135478 AAATGGTAGAAAATTTAGAAATTCTAAAAAAAAAAAATTTGTAAATTGACCC
1 AAATGGTGGAAAATTTAGAAATTCTAAAAAAAAAAAATTTCTAAATTGACCC
* * *
8135530 AAATGGTGGAGAATTTAGAAATTC-AAAATAAAAAAATATTTCTAATTTGGCCC
1 AAATGGTGGAAAATTTAGAAATTCTAAAA-AAAAAAA-ATTTCTAAATTGACCC
8135583 AAATGGTG
1 AAATGGTG
8135591 AAATAATTAG
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
51 4 0.07
52 29 0.54
53 21 0.39
ACGTcount: A:0.49, C:0.08, G:0.15, T:0.28
Consensus pattern (52 bp):
AAATGGTGGAAAATTTAGAAATTCTAAAAAAAAAAAATTTCTAAATTGACCC
Found at i:8139180 original size:24 final size:24
Alignment explanation
Indices: 8139152--8139198 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
8139142 AAAAGGTCTC
* *
8139152 AAAGAGAGAAAAAAAAGTAAAATG
1 AAAGAAAGAAAAAAAAGAAAAATG
* *
8139176 AAAGAAAGAGAGAAAAGAAAAAT
1 AAAGAAAGAAAAAAAAGAAAAAT
8139199 ACCACAAACA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.21, T:0.06
Consensus pattern (24 bp):
AAAGAAAGAAAAAAAAGAAAAATG
Found at i:8139556 original size:8 final size:8
Alignment explanation
Indices: 8139524--8139576 Score: 52
Period size: 9 Copynumber: 6.0 Consensus size: 8
8139514 CTAATCGATG
8139524 GAAAAAGAA
1 GAAAAA-AA
8139533 GGAAAAATAA
1 -GAAAAA-AA
*
8139543 AAAAAAAA
1 GAAAAAAA
8139551 GGAAAAAATA
1 -GAAAAAA-A
8139561 GAAAAAAA
1 GAAAAAAA
8139569 GAAAAAAA
1 GAAAAAAA
8139577 ATGAAAGAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
8 11 0.29
9 18 0.47
10 9 0.24
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (8 bp):
GAAAAAAA
Found at i:8139569 original size:18 final size:19
Alignment explanation
Indices: 8139524--8139575 Score: 65
Period size: 18 Copynumber: 2.8 Consensus size: 19
8139514 CTAATCGATG
8139524 GAAAAAGAAGG-AAAAATAA
1 GAAAAA-AAGGAAAAAATAA
*
8139543 AAAAAAAAGGAAAAAAT-A
1 GAAAAAAAGGAAAAAATAA
8139561 GAAAAAAA-GAAAAAA
1 GAAAAAAAGGAAAAAA
8139576 AATGAAAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 7 0.23
18 12 0.40
19 11 0.37
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (19 bp):
GAAAAAAAGGAAAAAATAA
Found at i:8139575 original size:19 final size:20
Alignment explanation
Indices: 8139525--8139582 Score: 70
Period size: 19 Copynumber: 3.0 Consensus size: 20
8139515 TAATCGATGG
*
8139525 AAAAAGAAGGAAAAATA-AA
1 AAAAAGAAGAAAAAATAGAA
8139544 AAAAA-AAGGAAAAAATAGAA
1 AAAAAGAA-GAAAAAATAGAA
8139564 AAAAAGAA-AAAAAAT-GAA
1 AAAAAGAAGAAAAAATAGAA
8139582 A
1 A
8139583 GAATGCAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
18 6 0.17
19 20 0.57
20 7 0.20
21 2 0.06
ACGTcount: A:0.81, C:0.00, G:0.14, T:0.05
Consensus pattern (20 bp):
AAAAAGAAGAAAAAATAGAA
Found at i:8139592 original size:27 final size:26
Alignment explanation
Indices: 8139527--8139594 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 26
8139517 ATCGATGGAA
*
8139527 AAAGAAGGAAAAATAAAAAAAAAAGG
1 AAAGAATGAAAAATAAAAAAAAAAGG
* *
8139553 AAAAAATAGAAAAA-AAGAAAAAAAATG
1 AAAGAAT-GAAAAATAA-AAAAAAAAGG
8139580 AAAGAATGCAAAAAT
1 AAAGAATG-AAAAAT
8139595 GTACAAGGAG
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
26 8 0.24
27 26 0.76
ACGTcount: A:0.76, C:0.01, G:0.15, T:0.07
Consensus pattern (26 bp):
AAAGAATGAAAAATAAAAAAAAAAGG
Found at i:8141620 original size:42 final size:42
Alignment explanation
Indices: 8141487--8141712 Score: 212
Period size: 43 Copynumber: 5.4 Consensus size: 42
8141477 AAGTCATTGA
* * *
8141487 ACCTCTGTTTAGATGAG-AATTTA-TTTT-CAAAGTTGTGGC
1 ACCTCTATTTAGAGGAGCAATTTATTTTTCCAAAGTTGTGGT
* * *
8141526 GCCTCTATTTAGAAGAGCAATTTATTTTT-TAAAGTTGTGGT
1 ACCTCTATTTAGAGGAGCAATTTATTTTTCCAAAGTTGTGGT
* * * *
8141567 ACCTTTGTTTAGAGGAGTAATTTATTTTTCCAAAATTGTGGT
1 ACCTCTATTTAGAGGAGCAATTTATTTTTCCAAAGTTGTGGT
* * *
8141609 ACCTTTATTTAGAGGAGCAATTTTACTTTTCCAAAATTGTGGT
1 ACCTCTATTTAGAGGAGCAA-TTTATTTTTCCAAAGTTGTGGT
* * * *
8141652 GCCTCTATTTAAATGAGCATTTTATTTTTCTCAAAGTTGT--T
1 ACCTCTATTTAGAGGAGCAATTTATTTTTC-CAAAGTTGTGGT
*
8141693 AAGCCTCTATTTAGATGAGC
1 -A-CCTCTATTTAGAGGAGC
8141713 TTTCTTTACT
Statistics
Matches: 156, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
39 14 0.09
40 6 0.04
41 39 0.25
42 37 0.24
43 60 0.38
ACGTcount: A:0.27, C:0.13, G:0.18, T:0.43
Consensus pattern (42 bp):
ACCTCTATTTAGAGGAGCAATTTATTTTTCCAAAGTTGTGGT
Found at i:8141937 original size:4 final size:5
Alignment explanation
Indices: 8141914--8141985 Score: 71
Period size: 5 Copynumber: 14.2 Consensus size: 5
8141904 CAATTGTTTG
8141914 TTATT TTATT TTATT TTA-T TTATT TTGATT CTTATTT TTATTT TTATT
1 TTATT TTATT TTATT TTATT TTATT TT-ATT -TTA-TT TTA-TT TTATT
8141962 TT-TT ATT-TT TTA-T TTATT TTATT T
1 TTATT -TTATT TTATT TTATT TTATT T
8141986 AAGATAATAG
Statistics
Matches: 60, Mismatches: 0, Indels: 14
0.81 0.00 0.19
Matches are distributed among these distances:
4 12 0.20
5 31 0.52
6 13 0.22
7 4 0.07
ACGTcount: A:0.18, C:0.01, G:0.01, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:8141956 original size:6 final size:6
Alignment explanation
Indices: 8141917--8141985 Score: 61
Period size: 6 Copynumber: 11.3 Consensus size: 6
8141907 TTGTTTGTTA
* * *
8141917 TTTTAT TTTATTT TATTTAT TTTGAT TCTTAT TTTTAT TTTTATT TTTTAT
1 TTTTAT TTT-TAT T-TTTAT TTTTAT TTTTAT TTTTAT TTTTA-T TTTTAT
*
8141968 TTTT-T ATTTA- TTTTAT TT
1 TTTTAT TTTTAT TTTTAT TT
8141986 AAGATAATAG
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
5 8 0.16
6 28 0.56
7 12 0.24
8 2 0.04
ACGTcount: A:0.17, C:0.01, G:0.01, T:0.80
Consensus pattern (6 bp):
TTTTAT
Found at i:8141964 original size:7 final size:7
Alignment explanation
Indices: 8141948--8141976 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
8141938 TTGATTCTTA
8141948 TTTTTA-
1 TTTTTAT
8141954 TTTTTAT
1 TTTTTAT
8141961 TTTTTAT
1 TTTTTAT
8141968 TTTTTAT
1 TTTTTAT
8141975 TT
1 TT
8141977 ATTTTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTAT
Found at i:8143081 original size:16 final size:16
Alignment explanation
Indices: 8143039--8143081 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
8143029 ATTTATTTAC
8143039 AAAAC-AAAAAAAATA
1 AAAACAAAAAAAAATA
* *
8143054 AAAATAATAAAAAATA
1 AAAACAAAAAAAAATA
8143070 AAAACAAAAAAA
1 AAAACAAAAAAA
8143082 TATTGATAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
15 4 0.17
16 19 0.83
ACGTcount: A:0.86, C:0.05, G:0.00, T:0.09
Consensus pattern (16 bp):
AAAACAAAAAAAAATA
Found at i:8144181 original size:9 final size:8
Alignment explanation
Indices: 8144164--8144199 Score: 56
Period size: 8 Copynumber: 4.5 Consensus size: 8
8144154 ATTTTTTGCT
8144164 AATAAAAA
1 AATAAAAA
8144172 AATAAAAA
1 AATAAAAA
8144180 AAT-AAAA
1 AATAAAAA
8144187 AATGAAAAA
1 AAT-AAAAA
8144196 AATA
1 AATA
8144200 GGTAGTTAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
7 7 0.27
8 12 0.46
9 7 0.27
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.14
Consensus pattern (8 bp):
AATAAAAA
Found at i:8145296 original size:60 final size:59
Alignment explanation
Indices: 8145214--8145400 Score: 209
Period size: 60 Copynumber: 3.1 Consensus size: 59
8145204 TTTCGAAAAT
* * * *
8145214 AAAAAAAAGAAAAAAGA-ATTTCTAAAAAGGCCCAAATGGTGAAAAATTTAGAAATTCTG
1 AAAAAAAAAAAAAAAAATATTTCTAAATAGGCCCAAATGGTGAAAAATTTAGAAATTC-C
* * * *
8145273 AAAAAAAAAAAAGAAAATATTTCTAAATTGACCCAAATGGGGAAAAATTTAGAAA-TCC
1 AAAAAAAAAAAAAAAAATATTTCTAAATAGGCCCAAATGGTGAAAAATTTAGAAATTCC
8145331 AACAAAAAAAATAAAAAAATATAGAATTTCTAAATAGGCCCAAATGGTGAAAAATTTAGAAATT-
1 -A-AAAAAAAA-AAAAAAA-AT---ATTTCTAAATAGGCCCAAATGGTGAAAAATTTAGAAATTC
8145395 C
59 C
8145396 AAAAA
1 AAAAA
8145401 GAGAAAATAT
Statistics
Matches: 107, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
59 17 0.16
60 41 0.38
61 6 0.06
62 2 0.02
63 4 0.04
64 1 0.01
65 35 0.33
66 1 0.01
ACGTcount: A:0.58, C:0.09, G:0.12, T:0.21
Consensus pattern (59 bp):
AAAAAAAAAAAAAAAAATATTTCTAAATAGGCCCAAATGGTGAAAAATTTAGAAATTCC
Found at i:8150095 original size:9 final size:9
Alignment explanation
Indices: 8150081--8150106 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
8150071 AGATGTGGTC
8150081 AAATGATGA
1 AAATGATGA
8150090 AAATGATGA
1 AAATGATGA
8150099 AAATGATG
1 AAATGATG
8150107 TGGGCCAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.23, T:0.23
Consensus pattern (9 bp):
AAATGATGA
Found at i:8150298 original size:63 final size:63
Alignment explanation
Indices: 8150219--8150346 Score: 175
Period size: 63 Copynumber: 2.0 Consensus size: 63
8150209 CTGAAGTGGT
* * * * * *
8150219 TAATGCTGAGAAGCCTATGAATGGTGACCAAGTGATGGAGGATAAAATTCATTTTGAAATAGC
1 TAATGATGAGAAGCCTATGAATGGTGACCAAGTAATAGAAGATAAAATCCATTCTGAAATAGC
* * *
8150282 TAATGATGAGAAGCCTATGAGTGGTGACCAAGTAATAGAAGATAGAATCCATTCTGAAATGGC
1 TAATGATGAGAAGCCTATGAATGGTGACCAAGTAATAGAAGATAAAATCCATTCTGAAATAGC
8150345 TA
1 TA
8150347 GTGCTAAAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
63 56 1.00
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.26
Consensus pattern (63 bp):
TAATGATGAGAAGCCTATGAATGGTGACCAAGTAATAGAAGATAAAATCCATTCTGAAATAGC
Found at i:8151170 original size:40 final size:40
Alignment explanation
Indices: 8151116--8151236 Score: 145
Period size: 42 Copynumber: 3.0 Consensus size: 40
8151106 CGTTTAGATG
8151116 AGCATTTTACTTTTCAAAGTTACGGTGCCTCTA-TTAAGAGA
1 AGCATTTTA-TTTTCAAAGTTACGGTGCCTCTATTTAA-AGA
* *
8151157 AGCATTTTATTTTCAAAGTTATGGTGCCTCTATTTAAAGG
1 AGCATTTTATTTTCAAAGTTACGGTGCCTCTATTTAAAGA
* ** *
8151197 AGCATTTATTTTTTTCAAAGTTATTGAGCCTCTATTTAAA
1 AGCA-TT-TTATTTTCAAAGTTACGGTGCCTCTATTTAAA
8151237 TGAACTTTGT
Statistics
Matches: 72, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
40 28 0.39
41 15 0.21
42 29 0.40
ACGTcount: A:0.29, C:0.14, G:0.15, T:0.42
Consensus pattern (40 bp):
AGCATTTTATTTTCAAAGTTACGGTGCCTCTATTTAAAGA
Found at i:8151228 original size:42 final size:40
Alignment explanation
Indices: 8151069--8151236 Score: 155
Period size: 40 Copynumber: 4.1 Consensus size: 40
8151059 GACATGATTG
* * * *
8151069 TTAAAG-AGCTTTTTACTTTTCAAAAGTTGTGGTGCTTC-GT
1 TTAAAGAAGCATTTTA-TTTTC-AAAGTTATGGTGCCTCTAT
* *
8151109 TTAGATG-AGCATTTTACTTTTCAAAGTTACGGTGCCTCTA-
1 TTA-AAGAAGCATTTTA-TTTTCAAAGTTATGGTGCCTCTAT
8151149 TTAAGAGAAGCATTTTATTTTCAAAGTTATGGTGCCTCTAT
1 TTAA-AGAAGCATTTTATTTTCAAAGTTATGGTGCCTCTAT
* * * *
8151190 TTAAAGGAGCATTTATTTTTTTCAAAGTTATTGAGCCTCTAT
1 TTAAAGAAGCA-TT-TTATTTTCAAAGTTATGGTGCCTCTAT
8151232 TTAAA
1 TTAAA
8151237 TGAACTTTGT
Statistics
Matches: 109, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
39 1 0.01
40 48 0.44
41 31 0.28
42 29 0.27
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.43
Consensus pattern (40 bp):
TTAAAGAAGCATTTTATTTTCAAAGTTATGGTGCCTCTAT
Found at i:8151431 original size:8 final size:8
Alignment explanation
Indices: 8151418--8151453 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
8151408 ATTTTTTGCT
8151418 AATAAAAA
1 AATAAAAA
8151426 AATAAAAA
1 AATAAAAA
*
8151434 AATTAAAA
1 AATAAAAA
*
8151442 ATTAAAAA
1 AATAAAAA
8151450 AATA
1 AATA
8151454 TGTAGTTGAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (8 bp):
AATAAAAA
Found at i:8151922 original size:8 final size:8
Alignment explanation
Indices: 8151902--8151937 Score: 56
Period size: 8 Copynumber: 4.5 Consensus size: 8
8151892 TTAAATTTAA
8151902 AAAAAGAAT
1 AAAAA-AAT
8151911 -AAAAAAT
1 AAAAAAAT
8151918 AAAAAAAT
1 AAAAAAAT
8151926 AAAAAAAT
1 AAAAAAAT
8151934 AAAA
1 AAAA
8151938 TATATTTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 3 0.12
8 23 0.88
ACGTcount: A:0.86, C:0.00, G:0.03, T:0.11
Consensus pattern (8 bp):
AAAAAAAT
Found at i:8152225 original size:181 final size:170
Alignment explanation
Indices: 8152035--8152454 Score: 441
Period size: 171 Copynumber: 2.4 Consensus size: 170
8152025 AAATTTTGTT
*
8152035 TAAATTTGTCTCAAATTGTGAAATAATTTAGAT-AAATTTTCAATAAGAATAATTAATATTTTAT
1 TAAATTTGTC-CAAATTGTGGAATAATTTAGATGAAA-TTTCAATAA-AATAATT-ATA-TTTAT
*
8152099 TTTCAAACAAAAAAATAAAAAATAAATT-TTGAAATTAAATACAAAGTACCCAATAATGAGATTC
61 TTTC---C----AAAT-AAAAATAAATTGTTGAAAATAAATACAAAGTACCCAATAATGAGATTC
*
8152163 TTAGAAATTTCAAATGGTAAATTTCTAAGAAATCTCTAGGTGAGAAATTTCTC
118 TTAGAAATTTCAAATGGTAAATTCCTAAGAAATCTCTAGGTGAGAAATTTCTC
* *
8152216 TAAATTTGTCCCAAATTGTGGAATAATTTAGATGAAATTTCAATAAAAGTAATTGTA-TTCTTTT
1 TAAATTTGT-CCAAATTGTGGAATAATTTAGATGAAATTTCAATAAAA-TAATTATATTTATTTT
* *** ** *** * * *
8152280 CCAAATAAAATTTTTTTGTTGAAAATATTTGTTAATTATCCAATGATGAGATTCTTAGAAATTTC
64 CCAAATAAAAATAAATTGTTGAAAATAAATACAAAGTACCCAATAATGAGATTCTTAGAAATTTC
* *
8152345 AAATGGTAAATTCCTAAGAAATCTCTTGGTGAGAAATTTCTT
129 AAATGGTAAATTCCTAAGAAATCTCTAGGTGAGAAATTTCTC
* * * *
8152387 TAAATTTGTCCCAATAGTGGAAGAATTTAAATGAAATTTCAATAAAAAATAATTATCATATTATT
1 TAAATTTGTCCAAATTGTGGAATAATTTAGATGAAATTTCAAT--AAAATAATTAT-AT-TTATT
8152452 TTC
62 TTC
8152455 TTTTCAAAAA
Statistics
Matches: 205, Mismatches: 25, Indels: 25
0.80 0.10 0.10
Matches are distributed among these distances:
170 37 0.18
171 96 0.47
172 5 0.02
174 7 0.03
175 1 0.00
178 7 0.03
180 4 0.02
181 44 0.21
182 4 0.02
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.38
Consensus pattern (170 bp):
TAAATTTGTCCAAATTGTGGAATAATTTAGATGAAATTTCAATAAAATAATTATATTTATTTTCC
AAATAAAAATAAATTGTTGAAAATAAATACAAAGTACCCAATAATGAGATTCTTAGAAATTTCAA
ATGGTAAATTCCTAAGAAATCTCTAGGTGAGAAATTTCTC
Found at i:8152542 original size:50 final size:50
Alignment explanation
Indices: 8152478--8152575 Score: 126
Period size: 50 Copynumber: 2.0 Consensus size: 50
8152468 AAAAAAAAAG
* * *
8152478 AAAAAAGAATTTCTAAATAGGA-CCAAATGATGAAAAATTTAGAAATCCCA
1 AAAAAAAAAATTCTAAAT-GGACCCAAATGATGAAAAACTTAGAAATCCCA
* * *
8152528 AAAAAAAAAATTCTAAATTGACCCAAATGGTGGAAAACTTAGAAATCC
1 AAAAAAAAAATTCTAAATGGACCCAAATGATGAAAAACTTAGAAATCC
8152576 AACAAAATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
49 2 0.05
50 39 0.95
ACGTcount: A:0.53, C:0.13, G:0.12, T:0.21
Consensus pattern (50 bp):
AAAAAAAAAATTCTAAATGGACCCAAATGATGAAAAACTTAGAAATCCCA
Found at i:8155894 original size:30 final size:30
Alignment explanation
Indices: 8155839--8155896 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
8155829 ATGTTTATAA
8155839 AATATATTTAATTTTTATTAAAATTTTAAAT
1 AATATATTT-ATTTTTATTAAAATTTTAAAT
*
8155870 AATATATTT-TTTTATATTATAATTTTA
1 AATATATTTATTTT-TATTAAAATTTTA
8155897 TAAAAAACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 4 0.16
30 12 0.48
31 9 0.36
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (30 bp):
AATATATTTATTTTTATTAAAATTTTAAAT
Found at i:8157850 original size:2 final size:2
Alignment explanation
Indices: 8157843--8157925 Score: 103
Period size: 2 Copynumber: 41.5 Consensus size: 2
8157833 TCATACTGAA
* *
8157843 AT AT AT AT AT AT AT AT AT AT AT AT AT AG AC AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * *
8157885 AT GT AT GT AT GT AT GT AT GT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8157926 CAGGCACGAA
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 68 1.00
ACGTcount: A:0.45, C:0.01, G:0.07, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8158299 original size:2 final size:2
Alignment explanation
Indices: 8158292--8158322 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8158282 TTGAATTGTA
8158292 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8158323 AAATTGGCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8159882 original size:18 final size:19
Alignment explanation
Indices: 8159854--8159900 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
8159844 TTGGGGAAAC
* *
8159854 TTTTAATTTTTGGGATTTTG
1 TTTTGATTTTTGGG-TTTGG
8159874 -TTTGATTTTTGGGTTTGG
1 TTTTGATTTTTGGGTTTGG
8159892 TTTTGATTT
1 TTTTGATTT
8159901 CTAGGTTCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 4 0.17
19 20 0.83
ACGTcount: A:0.11, C:0.00, G:0.23, T:0.66
Consensus pattern (19 bp):
TTTTGATTTTTGGGTTTGG
Found at i:8160009 original size:19 final size:19
Alignment explanation
Indices: 8159944--8160009 Score: 78
Period size: 20 Copynumber: 3.4 Consensus size: 19
8159934 AATTTTTCCT
*
8159944 AATTTTCTGGGTTTAAATTT
1 AATTTT-TGGGTTTAAATTG
* **
8159964 AAATTTTGGGTTTTTATATG
1 AATTTTTGGGTTTAAAT-TG
8159984 AATTTTTGGGTTTAAATTG
1 AATTTTTGGGTTTAAATTG
8160003 AATTTTT
1 AATTTTT
8160010 CGGTGGGTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
19 18 0.47
20 20 0.53
ACGTcount: A:0.26, C:0.02, G:0.17, T:0.56
Consensus pattern (19 bp):
AATTTTTGGGTTTAAATTG
Found at i:8160402 original size:19 final size:16
Alignment explanation
Indices: 8160368--8160412 Score: 54
Period size: 19 Copynumber: 2.6 Consensus size: 16
8160358 CAATCACAAG
8160368 ATTTTTTTTTTCTTTT
1 ATTTTTTTTTTCTTTT
8160384 ATTTTTCTTTTTCAATTTT
1 ATTTTT-TTTTTC--TTTT
8160403 ATTTTATTTT
1 ATTTT-TTTT
8160413 ATAATTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 6 0.24
17 6 0.24
19 12 0.48
20 1 0.04
ACGTcount: A:0.13, C:0.07, G:0.00, T:0.80
Consensus pattern (16 bp):
ATTTTTTTTTTCTTTT
Found at i:8160447 original size:6 final size:6
Alignment explanation
Indices: 8160368--8160484 Score: 53
Period size: 6 Copynumber: 18.7 Consensus size: 6
8160358 CAATCACAAG
* * *
8160368 ATTTTT -TTTTT -CTTTT ATTTTT CTTTTT CAATTTT A-TTTT ATTTTAT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT -ATTTTT ATTTTT ATTTT-T
* * * * *
8160415 AATTTTTT GTTTTT GTTTTT TTGTTTT ATTTTT ATAGTTAT ATTTAT ATTTTT
1 -A-TTTTT ATTTTT ATTTTT AT-TTTT ATTTTT AT--TTTT ATTTTT ATTTTT
8160468 -TGTTTT ATTATTT ATTT
1 AT-TTTT ATT-TTT ATTT
8160485 ATTTTAATTG
Statistics
Matches: 89, Mismatches: 10, Indels: 24
0.72 0.08 0.20
Matches are distributed among these distances:
5 15 0.17
6 46 0.52
7 17 0.19
8 7 0.08
9 4 0.04
ACGTcount: A:0.16, C:0.03, G:0.04, T:0.77
Consensus pattern (6 bp):
ATTTTT
Found at i:8160447 original size:14 final size:14
Alignment explanation
Indices: 8160371--8160490 Score: 64
Period size: 14 Copynumber: 8.0 Consensus size: 14
8160361 TCACAAGATT
*
8160371 TTTTTTTTCTTTTA
1 TTTTTTTTATTTTA
**
8160385 TTTTTCTTT-TTCAA
1 TTTTT-TTTATTTTA
8160399 TTTTATTTTATTTTA
1 TTTT-TTTTATTTTA
* *
8160414 TAATTTTTTGTTTT-
1 T-TTTTTTTATTTTA
*
8160428 TGTTTTTTTGTTTTA
1 T-TTTTTTTATTTTA
8160443 TTTTTATAGTTATATTTA
1 TTTTT-T--TTAT-TTTA
* *
8160461 TATTTTTTGTTTTA
1 TTTTTTTTATTTTA
8160475 TTATTTATTTATTTTA
1 TT-TTT-TTTATTTTA
8160491 ATTGTGATTG
Statistics
Matches: 82, Mismatches: 13, Indels: 20
0.71 0.11 0.17
Matches are distributed among these distances:
14 36 0.44
15 24 0.29
16 10 0.12
17 4 0.05
18 8 0.10
ACGTcount: A:0.17, C:0.03, G:0.04, T:0.77
Consensus pattern (14 bp):
TTTTTTTTATTTTA
Found at i:8166320 original size:16 final size:13
Alignment explanation
Indices: 8166286--8166319 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
8166276 TTATTATCCT
8166286 TTTTTTTGTAGAA
1 TTTTTTTGTAGAA
*
8166299 TTTTTTTGTAGCA
1 TTTTTTTGTAGAA
8166312 TTATTTTT
1 TT-TTTTT
8166320 TCTCTTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.18, C:0.03, G:0.12, T:0.68
Consensus pattern (13 bp):
TTTTTTTGTAGAA
Found at i:8167957 original size:14 final size:14
Alignment explanation
Indices: 8167940--8167967 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8167930 AAATATAAAT
8167940 ATATAATAATAATA
1 ATATAATAATAATA
8167954 ATATAATAATAATA
1 ATATAATAATAATA
8167968 GGTAATAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
ATATAATAATAATA
Found at i:8167998 original size:19 final size:18
Alignment explanation
Indices: 8167938--8167999 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 18
8167928 AAAAATATAA
*
8167938 ATATA-TAATAATAATA-
1 ATATATTAATAATAGTAT
*
8167954 ATATAATAATAATAGGTA-
1 ATATATTAATAATA-GTAT
8167972 ATAGTATTAATAATAGTAT
1 ATA-TATTAATAATAGTAT
8167991 ATTATATTA
1 A-TATATTA
8168000 TATTATATAC
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
16 5 0.13
17 8 0.21
18 8 0.21
19 16 0.41
20 2 0.05
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.40
Consensus pattern (18 bp):
ATATATTAATAATAGTAT
Found at i:8168080 original size:26 final size:26
Alignment explanation
Indices: 8168038--8168089 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
8168028 AAGGGATCGA
*
8168038 CCCAATTAGGTCGGGACACAAATGGG
1 CCCAATTAGCTCGGGACACAAATGGG
*
8168064 CCCAATTGAGCTC-GGACATAAATGGG
1 CCCAATT-AGCTCGGGACACAAATGGG
8168090 TGTCTACAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.31, C:0.23, G:0.29, T:0.17
Consensus pattern (26 bp):
CCCAATTAGCTCGGGACACAAATGGG
Found at i:8168624 original size:23 final size:23
Alignment explanation
Indices: 8168598--8168668 Score: 71
Period size: 23 Copynumber: 3.3 Consensus size: 23
8168588 GCAAAGAAAT
8168598 CATCTTTCACCAACCTAAATGCA
1 CATCTTTCACCAACCTAAATGCA
** **
8168621 CATCTTT-GGCAA-AGAAAT---
1 CATCTTTCACCAACCTAAATGCA
8168639 CATCTTTCACCAACCTAAATGCA
1 CATCTTTCACCAACCTAAATGCA
8168662 CATCTTT
1 CATCTTT
8168669 GGCAAAGAAA
Statistics
Matches: 35, Mismatches: 8, Indels: 10
0.66 0.15 0.19
Matches are distributed among these distances:
18 7 0.20
19 3 0.09
20 4 0.11
21 4 0.11
22 3 0.09
23 14 0.40
ACGTcount: A:0.34, C:0.30, G:0.07, T:0.30
Consensus pattern (23 bp):
CATCTTTCACCAACCTAAATGCA
Found at i:8168688 original size:41 final size:41
Alignment explanation
Indices: 8168585--8168678 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
8168575 ATGCATGTCC
8168585 TTGGCAAAGAAATCATCTTTCACCAACCTAAATGCACATCT
1 TTGGCAAAGAAATCATCTTTCACCAACCTAAATGCACATCT
8168626 TTGGCAAAGAAATCATCTTTCACCAACCTAAATGCACATCT
1 TTGGCAAAGAAATCATCTTTCACCAACCTAAATGCACATCT
8168667 TTGGCAAAGAAA
1 TTGGCAAAGAAA
8168679 CTGTCTTTCA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.26
Consensus pattern (41 bp):
TTGGCAAAGAAATCATCTTTCACCAACCTAAATGCACATCT
Found at i:8179366 original size:3 final size:3
Alignment explanation
Indices: 8179358--8179395 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
8179348 TGAAAAGATT
8179358 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
8179396 CTTTTGTTTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8179981 original size:21 final size:21
Alignment explanation
Indices: 8179949--8179988 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
8179939 TCTTTCCCTA
*
8179949 ACCTTCTAAAACCTCAAATTC
1 ACCTTCTAAAACCTAAAATTC
8179970 ACCTT-TAGAAACCTAAAAT
1 ACCTTCTA-AAACCTAAAAT
8179989 CACACCCAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.42, C:0.28, G:0.03, T:0.28
Consensus pattern (21 bp):
ACCTTCTAAAACCTAAAATTC
Found at i:8180338 original size:3 final size:3
Alignment explanation
Indices: 8180332--8180385 Score: 54
Period size: 3 Copynumber: 17.3 Consensus size: 3
8180322 GAAAAAAAAG
* * * *
8180332 AAT AAT AAA AAT AAA AAT ATAT AAT AAT AAT AAT AAGT AAT AGT ATT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AA-T AAT AAT AAT
8180379 AAT AAT A
1 AAT AAT A
8180386 GTATATTATA
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
3 36 0.86
4 6 0.14
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:8180348 original size:22 final size:22
Alignment explanation
Indices: 8180323--8180367 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
8180313 AAAAAGATTG
8180323 AAAAAAAAGAATAATAAAAATA
1 AAAAAAAAGAATAATAAAAATA
* * * *
8180345 AAAATATATAATAATAATAATA
1 AAAAAAAAGAATAATAAAAATA
8180367 A
1 A
8180368 GTAATAGTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (22 bp):
AAAAAAAAGAATAATAAAAATA
Found at i:8180372 original size:16 final size:15
Alignment explanation
Indices: 8180332--8180385 Score: 54
Period size: 16 Copynumber: 3.5 Consensus size: 15
8180322 GAAAAAAAAG
* *
8180332 AATAATAAAAATAAA
1 AATAATAATAATAAT
8180347 AATATATAATAATAAT
1 AATA-ATAATAATAAT
* *
8180363 AATAAGTAATAGTATT
1 AATAA-TAATAATAAT
8180379 AATAATA
1 AATAATA
8180386 GTATATTATA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
15 7 0.21
16 26 0.79
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (15 bp):
AATAATAATAATAAT
Found at i:8180402 original size:12 final size:13
Alignment explanation
Indices: 8180369--8180410 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 13
8180359 TAATAATAAG
*
8180369 TAATAGTAT-TAA
1 TAATAGTATATTA
8180381 TAATAGTATATTA
1 TAATAGTATATTA
*
8180394 TAATA-TATACTA
1 TAATAGTATATTA
8180406 TAATA
1 TAATA
8180411 ACAAAGTATG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
12 20 0.74
13 7 0.26
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (13 bp):
TAATAGTATATTA
Found at i:8182221 original size:84 final size:83
Alignment explanation
Indices: 8182120--8182325 Score: 236
Period size: 84 Copynumber: 2.5 Consensus size: 83
8182110 GAGCTTTTTC
*
8182120 AAAGTTT-GATTTGTAAGACCTATGGGCATAATCTCTAAGTCTTTCAA-AAAAAATTCATAAGTC
1 AAAGTTTAGATTTGTAAGACCTATGGGCATAATCTCTAAGTC-TT-AACAAAAAATTCACAAGTC
*
8182183 TTCTGAGCTGAGTTTGCTTT
64 TTCTGAGCTGAGTTTACTTT
* * * * * * *
8182203 AGAGTTTAGATTTTTAAGACCTCTGAGCATAATCTCTAATTCTTAAGCATAAGATTCACAAGTCT
1 AAAGTTTAGATTTGTAAGACCTATGGGCATAATCTCTAAGTCTTAA-CAAAAAATTCACAAGTCT
*
8182268 TCTGAGCTGAGTTTATTTT
65 TCTGAGCTGAGTTTACTTT
* ** * *
8182287 AAAATCGAGATTTGTAAAACCTTTGGGCATAATCTCTAA
1 AAAGTTTAGATTTGTAAGACCTATGGGCATAATCTCTAA
8182326 TCCTCTGAGT
Statistics
Matches: 102, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
82 2 0.02
83 8 0.08
84 92 0.90
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (83 bp):
AAAGTTTAGATTTGTAAGACCTATGGGCATAATCTCTAAGTCTTAACAAAAAATTCACAAGTCTT
CTGAGCTGAGTTTACTTT
Found at i:8182370 original size:83 final size:83
Alignment explanation
Indices: 8182210--8182386 Score: 194
Period size: 83 Copynumber: 2.1 Consensus size: 83
8182200 TTTAGAGTTT
* * * * *
8182210 AGATTTTTAAGACCTCTGAGCATAATCTCTAATTCTTAAGCATAAGATTCACAAGTCTTCTGAGC
1 AGATTTGTAAAACCTCTGAGCATAATCTCTAATCCTTAAG-ATAAGATTCACAAATCTTCTAAGC
* *
8182275 TGAGTTTATTTTAAAATCG
65 TGAATCTATTTTAAAATCG
* * * **
8182294 AGATTTGTAAAACCTTTGGGCATAATCTCTAATCCTCTGAG-TAAGATTCGTAAATCTTCTAAGC
1 AGATTTGTAAAACCTCTGAGCATAATCTCTAATCCT-TAAGATAAGATTCACAAATCTTCTAAGC
* *
8182358 TGAATCTGTTTTAAAATTG
65 TGAATCTATTTTAAAATCG
*
8182377 AAATTTGTAA
1 AGATTTGTAA
8182387 GATCTCCGAA
Statistics
Matches: 77, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
83 43 0.56
84 31 0.40
85 3 0.04
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (83 bp):
AGATTTGTAAAACCTCTGAGCATAATCTCTAATCCTTAAGATAAGATTCACAAATCTTCTAAGCT
GAATCTATTTTAAAATCG
Found at i:8184088 original size:22 final size:23
Alignment explanation
Indices: 8184040--8184085 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
8184030 ATTTTCTTTT
8184040 TTTTTGTTTTTTTTATATTTATA
1 TTTTTGTTTTTTTTATATTTATA
8184063 TTTTTGTTTTGTTATT-TATTTAT
1 TTTTTGTTTT-TT-TTATATTTAT
8184086 TTTAATTGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 10 0.48
24 9 0.43
25 2 0.10
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (23 bp):
TTTTTGTTTTTTTTATATTTATA
Found at i:8185975 original size:21 final size:22
Alignment explanation
Indices: 8185951--8185992 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
8185941 ATTTTTAATT
*
8185951 TTAATTTTATTATTA-CATTAA
1 TTAATTTTATCATTATCATTAA
8185972 TTAATTTTATCATTATCATTA
1 TTAATTTTATCATTATCATTA
8185993 CTTTCAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (22 bp):
TTAATTTTATCATTATCATTAA
Found at i:8197926 original size:63 final size:63
Alignment explanation
Indices: 8197871--8198028 Score: 161
Period size: 63 Copynumber: 2.6 Consensus size: 63
8197861 ATCCTCTTAG
8197871 ATTTTTTATG-AG-TG-GATTATT-AAAG-GTATTTTTTACTAAAAATGCATTCAGTAATCTTT
1 ATTTTTTATGTAGATGAGATTATTGAAAGCGT-TTTTTTACTAAAAATGCATTCAGTAATCTTT
* * * * *
8197930 TTTTTTTTTGTAGATGAGATTATTGAAAGCGTTTTTTTACTAAAAATGCCTTTAATAATCCCTTT
1 ATTTTTTATGTAGATGAGATTATTGAAAGCGTTTTTTTACTAAAAATGCATTCAGTAAT--CTTT
* *
8197995 CA-TTTTT-T-TAGATGAGATTATTGAAGGTGTTTTT
1 -ATTTTTTATGTAGATGAGATTATTGAAAGCGTTTTT
8198029 AGCTAGAAAA
Statistics
Matches: 83, Mismatches: 8, Indels: 12
0.81 0.08 0.12
Matches are distributed among these distances:
59 8 0.10
60 2 0.02
61 2 0.02
62 7 0.08
63 52 0.63
64 3 0.04
65 9 0.11
ACGTcount: A:0.28, C:0.08, G:0.15, T:0.49
Consensus pattern (63 bp):
ATTTTTTATGTAGATGAGATTATTGAAAGCGTTTTTTTACTAAAAATGCATTCAGTAATCTTT
Found at i:8198730 original size:291 final size:288
Alignment explanation
Indices: 8197971--8198782 Score: 938
Period size: 291 Copynumber: 2.8 Consensus size: 288
8197961 TTTTTTTACT
* * * **
8197971 AAAAATGCCTTTAATAATCCCTTTC-ATTTTTTTAGAT-GAGATTATTGAAGGTGTTTTTAGCTA
1 AAAAATACCTTAAATAATCCCCTTCAATTTTAAT-GATAG-GATTATTGAAGG-GTTTTTAGCTA
8198034 GAAAACATATTGAATAAT-TTCTTACAAAATATTGAATGGGATTATTGAAGGCGTTTCTAGCTAA
63 G-AAA-ATATTGAATAATCTT-TTACAAAATATTGAATGGGATTATTGAAGGCGTTTCTAGCTAA
* **
8198098 AAACGCCTTGAATAATTCATGGATTATTCAAGGCATTTTTGGCCAAAAACACCTTATATAACCTA
125 AAATGCCTTGAATAATTCATGGATTATTCAAGGCATTTTT-GCCAAAAATGCCTTATATAACCTA
** ** ** * * *
8198163 CAAATTATTCATTCATTGAAGATTATTAAAGGTATTTTCTATCAAAAATACCTTCAATAATCTCA
189 TGAATTATTCATTCAAAGGGGATTATTAAA-GTGTTTTCTATCAAAAACACCTTCAATAATCCCA
*
8198228 ACATTTTTTTGGTAATATTCAAGACGTTTTTGCCTA
253 ACATTTTTTTGGTAATATTCAAGACATTTTTGCCTA
* * *
8198264 AAAAATACCTTCAATAATCCCCTTCAATTTTTATGATAGGATTATT-AAAGGTTTTTAGCTAGAA
1 AAAAATACCTTAAATAATCCCCTTCAATTTTAATGATAGGATTATTGAAGGGTTTTTAGCTAGAA
* * * *
8198328 AACGTATTGAATAATCCTTTACAAAATATTGAATGGGGTTATTGAAGGCATTTCTAGTTAAAAAT
66 AA--TATTGAATAATCTTTTACAAAATATTGAATGGGATTATTGAAGGCGTTTCTAGCTAAAAAT
* *
8198393 GCCTTGAATAATTCATGGATTATTCAAGGTATTTTTTGCTAAAAATGCCTTATATAACCTATGAA
129 GCCTTGAATAATTCATGGATTATTCAAGGCA-TTTTTGCCAAAAATGCCTTATATAACCTATGAA
* * * * * *
8198458 TTATTCATTCAAAGGGGATTATTTAAGTGTTTTCTGTTAAAAACACTTTTAATAATCCCATCATT
193 TTATTCATTCAAAGGGGATTATTAAAGTGTTTTCTATCAAAAACACCTTCAATAATCCCAACATT
* **
8198523 TTTTTTG-AATATTCAAGGTATTTTTGCCTA
258 TTTTTGGTAATATTCAAGACATTTTTGCCTA
* *
8198553 GAAAATATCTTAAATAATCCCCTTCAATTTTAATGATAGGATTATTGAAGGCGTTTTTAG-TCAG
1 AAAAATACCTTAAATAATCCCCTTCAATTTTAATGATAGGATTATTGAAGG-GTTTTTAGCT-AG
* * * * * * *
8198617 AAAATACCTTAAATAATCTTTTACAACATATTAAATGGGATTATTAAAGGTGTTTTTGGCTAAAA
64 AAAATA--TTGAATAATCTTTTACAAAATATTGAATGGGATTATTGAAGGCGTTTCTAGCTAAAA
* * *
8198682 ATGCCTTGAATGATTCATGGATTATTCAAAGCATTTATTGCCAAAAATGCCTTCA-ATAACCCCA
127 ATGCCTTGAATAATTCATGGATTATTCAAGGCATTT-TTGCCAAAAATGCCTT-ATATAA-CCTA
* *
8198746 TGAATTATTCATTTAGAA-GGGATTATTCAAGATGTTT
189 TGAATTATTCATTCA-AAGGGGATTATTAAAG-TGTTT
8198783 ATGGCAAAAA
Statistics
Matches: 447, Mismatches: 56, Indels: 32
0.84 0.10 0.06
Matches are distributed among these distances:
289 65 0.15
290 47 0.11
291 249 0.56
292 39 0.09
293 39 0.09
294 8 0.02
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.38
Consensus pattern (288 bp):
AAAAATACCTTAAATAATCCCCTTCAATTTTAATGATAGGATTATTGAAGGGTTTTTAGCTAGAA
AATATTGAATAATCTTTTACAAAATATTGAATGGGATTATTGAAGGCGTTTCTAGCTAAAAATGC
CTTGAATAATTCATGGATTATTCAAGGCATTTTTGCCAAAAATGCCTTATATAACCTATGAATTA
TTCATTCAAAGGGGATTATTAAAGTGTTTTCTATCAAAAACACCTTCAATAATCCCAACATTTTT
TTGGTAATATTCAAGACATTTTTGCCTA
Found at i:8203190 original size:65 final size:63
Alignment explanation
Indices: 8203070--8203411 Score: 246
Period size: 65 Copynumber: 5.3 Consensus size: 63
8203060 TAATTCGTGA
* **
8203070 ATTACTTAAA-GCATTTTTGGCCAAAAATGCCTTTTATAATCCCCTCAACAAAATTTTTTGCATG
1 ATTA-TTAAAGGCATTTTTGGACAAAAATGCCTTCAATAATCCCCTCAACAAAATTTTTT--ATG
8203134 G
63 G
* *
8203135 ATTATTAAAGGCATTTATGGACAAAAATGCCTTCAATAATCCCCTCCAA-ATAATTTTTTATGG
1 ATTATTAAAGGCATTTTTGGACAAAAATGCCTTCAATAATCCCCT-CAACAAAATTTTTTATGG
* * * * ** * *
8203198 ATTATTGAAGGCATTTTTGGTCAAAAACGTCTTCAATAATCATCTCAA-TAAATTTTTATAAGGG
1 ATTATTAAAGGCATTTTTGGACAAAAATGCCTTCAATAATCCCCTCAACAAAATTTTT-T-ATGG
* ** * * * * *
8203262 ATTATTGATTGCATTTTT-TATCAAAAATGACTTTAATAGTCCCCTTAACAAAAGTTTTTATATG
1 ATTATTAAAGGCATTTTTGGA-CAAAAATGCCTTCAATAATCCCCTCAACAAAA-TTTTT-TATG
8203326 G
63 G
* * * * ** * * * *
8203327 ATTATTGAAGGCATTTTTAGCCGAAAACACCTTTAATATTCTCTCTC--CAAAGTTTTTTGAATG
1 ATTATTAAAGGCATTTTTGGACAAAAATGCCTTCAATAATC-CCCTCAACAAAATTTTTT--ATG
8203390 G
63 G
*
8203391 ATTATTAAAGGCGTTTTTGGA
1 ATTATTAAAGGCATTTTTGGA
8203412 TTATTAAAGG
Statistics
Matches: 222, Mismatches: 44, Indels: 23
0.77 0.15 0.08
Matches are distributed among these distances:
62 11 0.05
63 48 0.22
64 69 0.31
65 81 0.36
66 13 0.06
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (63 bp):
ATTATTAAAGGCATTTTTGGACAAAAATGCCTTCAATAATCCCCTCAACAAAATTTTTTATGG
Found at i:8203408 original size:129 final size:125
Alignment explanation
Indices: 8203118--8203409 Score: 291
Period size: 129 Copynumber: 2.3 Consensus size: 125
8203108 ATCCCCTCAA
* * * *
8203118 CAAAATTTTTTGCATGGATTATTAAAGGCATTTATGGACAAAAATGCCTTCAATAATCCCCTCCA
1 CAAAATTTTTTGAATGGATTATTAAAGGCATTT-TTGACAAAAATGACTTCAATAATCCCCTACA
* * **
8203183 AATAATTTTTTATGGATTATTGAAGGCATTTTTGGTCAAAAACGTCTTCAATAATCATCTC
65 AATAATTTTTTATGGATTATTGAAGGCATTTTTAGCCAAAAACACCTTCAATAATCATCTC
* * * ** * * *
8203244 AATAAATTTTTAT-AAGGGATTATTGATTGCATTTTTTATCAAAAATGACTTTAATAGTCCCCTT
1 CA-AAATTTTT-TGAATGGATTATTAAAGGCATTTTTGA-CAAAAATGACTTCAATAATCCCC-T
* * * * *
8203308 AACAAA-AGTTTTTATATGGATTATTGAAGGCATTTTTAGCCGAAAACACCTTTAATATTCTCTC
62 -ACAAATAATTTTT-TATGGATTATTGAAGGCATTTTTAGCCAAAAACACCTTCAATAATC-ATC
8203372 TC
124 TC
* *
8203374 CAAAGTTTTTTGAATGGATTATTAAAGGCGTTTTTG
1 CAAAATTTTTTGAATGGATTATTAAAGGCATTTTTG
8203410 GATTATTAAA
Statistics
Matches: 129, Mismatches: 29, Indels: 13
0.75 0.17 0.08
Matches are distributed among these distances:
126 3 0.02
127 44 0.34
128 9 0.07
129 68 0.53
130 5 0.04
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.39
Consensus pattern (125 bp):
CAAAATTTTTTGAATGGATTATTAAAGGCATTTTTGACAAAAATGACTTCAATAATCCCCTACAA
ATAATTTTTTATGGATTATTGAAGGCATTTTTAGCCAAAAACACCTTCAATAATCATCTC
Found at i:8203413 original size:20 final size:20
Alignment explanation
Indices: 8203388--8203430 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
8203378 GTTTTTTGAA
8203388 TGGATTATTAAAGGCGTTTT
1 TGGATTATTAAAGGCGTTTT
*
8203408 TGGATTATTAAAGGTGTTTT
1 TGGATTATTAAAGGCGTTTT
8203428 TGG
1 TGG
8203431 CCAAAAACGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.02, G:0.28, T:0.47
Consensus pattern (20 bp):
TGGATTATTAAAGGCGTTTT
Found at i:8203787 original size:64 final size:63
Alignment explanation
Indices: 8203700--8203836 Score: 188
Period size: 64 Copynumber: 2.2 Consensus size: 63
8203690 ATTCATACAA
** * *
8203700 AAAATTTTTTGTGTGGATTATTGAAAGCGTTTTTGACCAAAAAA-ACCTTCAATAATCCCTCTCC
1 AAAATTTTTTGAATAGATTATTGAAAGCATTTTTGA-CAAAAAACACCTTCAATAATCCCT-TCC
* *
8203764 AAAATTTTTTGAATAGATTATTGAAGGCATTTTTGACAAAAAACGCCTTCAATAATCCCTTCC
1 AAAATTTTTTGAATAGATTATTGAAAGCATTTTTGACAAAAAACACCTTCAATAATCCCTTCC
8203827 -AAATTTTTTG
1 AAAATTTTTTG
8203837 TAAGCCAATA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
62 10 0.15
63 10 0.15
64 46 0.70
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.37
Consensus pattern (63 bp):
AAAATTTTTTGAATAGATTATTGAAAGCATTTTTGACAAAAAACACCTTCAATAATCCCTTCC
Found at i:8206268 original size:15 final size:16
Alignment explanation
Indices: 8206248--8206282 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
8206238 TTTATGGTAA
8206248 AGAAGAAAAATTT-AG
1 AGAAGAAAAATTTGAG
*
8206263 AGAAGAAGAATTTGAG
1 AGAAGAAAAATTTGAG
8206279 AGAA
1 AGAA
8206283 TTTAGAAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.57, C:0.00, G:0.26, T:0.17
Consensus pattern (16 bp):
AGAAGAAAAATTTGAG
Found at i:8211168 original size:41 final size:43
Alignment explanation
Indices: 8211122--8211204 Score: 125
Period size: 41 Copynumber: 2.0 Consensus size: 43
8211112 AACCTAGAAG
* *
8211122 AAATTCCTAAAAAAAATCAAACCCA-AAAAAA-CTTTGCTAAA
1 AAATTCCCAAAAAAAATCAAACCCAGAAAAAACCCTTGCTAAA
*
8211163 AAATTCCCAAAAAGAATCAAACCCAGAAAAAACCCTTGCTAA
1 AAATTCCCAAAAAAAATCAAACCCAGAAAAAACCCTTGCTAA
8211205 TGACTTCTAG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 23 0.62
42 6 0.16
43 8 0.22
ACGTcount: A:0.55, C:0.23, G:0.05, T:0.17
Consensus pattern (43 bp):
AAATTCCCAAAAAAAATCAAACCCAGAAAAAACCCTTGCTAAA
Found at i:8211174 original size:70 final size:72
Alignment explanation
Indices: 8211058--8211190 Score: 180
Period size: 70 Copynumber: 1.9 Consensus size: 72
8211048 CATAAATTTG
* * * * ** *
8211058 AAAAAAAATCAAACCTAGAAAAATTCTCTGCTGAGAAATTTTCAAAAAGAATCAAACCTAGAAGA
1 AAAAAAAATCAAACCCAGAAAAATACTCTGCTAAAAAATTCCCAAAAAGAATCAAACCCAGAAGA
8211123 AATTCCT
66 AATTCCT
*
8211130 AAAAAAAATCAAACCCA-AAAAA-ACTTTGCTAAAAAATTCCCAAAAAGAATCAAACCCAGAA
1 AAAAAAAATCAAACCCAGAAAAATACTCTGCTAAAAAATTCCCAAAAAGAATCAAACCCAGAA
8211191 AAAACCCTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
70 32 0.60
71 5 0.09
72 16 0.30
ACGTcount: A:0.56, C:0.19, G:0.08, T:0.18
Consensus pattern (72 bp):
AAAAAAAATCAAACCCAGAAAAATACTCTGCTAAAAAATTCCCAAAAAGAATCAAACCCAGAAGA
AATTCCT
Found at i:8212790 original size:16 final size:16
Alignment explanation
Indices: 8212769--8212799 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8212759 AGAACCAAAA
*
8212769 AAGAGAAAAGGAATAT
1 AAGAGAAAAAGAATAT
8212785 AAGAGAAAAAGAATA
1 AAGAGAAAAAGAATA
8212800 AAAAAACCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.23, T:0.10
Consensus pattern (16 bp):
AAGAGAAAAAGAATAT
Found at i:8218099 original size:16 final size:16
Alignment explanation
Indices: 8218074--8218112 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
8218064 CTGTTCTGAA
* *
8218074 TTTTCCTTTTT-CTTT
1 TTTTCATTTTTCCTGT
8218089 TTTTCATTTTTCCTGT
1 TTTTCATTTTTCCTGT
8218105 TTTTCATT
1 TTTTCATT
8218113 CATTTTTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.05, C:0.18, G:0.03, T:0.74
Consensus pattern (16 bp):
TTTTCATTTTTCCTGT
Found at i:8218682 original size:21 final size:21
Alignment explanation
Indices: 8218658--8218737 Score: 90
Period size: 21 Copynumber: 3.8 Consensus size: 21
8218648 TTTTATTCAA
* *
8218658 AAAATTTAACAATTTACATTT
1 AAAATTTAAAAATTTACAATT
8218679 AAAATTTAAAAATTTACAATT
1 AAAATTTAAAAATTTACAATT
* *
8218700 AAAATTTAAATATTCAC-ATCT
1 AAAATTTAAAAATTTACAAT-T
*
8218721 AAAAATTTTAAAATTTA
1 -AAAATTTAAAAATTTA
8218738 TTACCAAAAT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
20 2 0.04
21 35 0.70
22 13 0.26
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (21 bp):
AAAATTTAAAAATTTACAATT
Found at i:8218687 original size:7 final size:7
Alignment explanation
Indices: 8218658--8218709 Score: 54
Period size: 7 Copynumber: 7.4 Consensus size: 7
8218648 TTTTATTCAA
8218658 AAAATTT
1 AAAATTT
8218665 AACAATTT
1 AA-AATTT
*
8218673 -ACATTT
1 AAAATTT
8218679 AAAATTT
1 AAAATTT
8218686 AAAAATTT
1 -AAAATTT
*
8218694 ACAA-TT
1 AAAATTT
8218700 AAAATTT
1 AAAATTT
8218707 AAA
1 AAA
8218710 TATTCACATC
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
6 9 0.24
7 16 0.43
8 12 0.32
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (7 bp):
AAAATTT
Found at i:8218712 original size:80 final size:81
Alignment explanation
Indices: 8218577--8218729 Score: 188
Period size: 80 Copynumber: 1.9 Consensus size: 81
8218567 TTTGTAATTG
* * * * *
8218577 AAATTTGAAAATTCACATTTTAATATTTTAAAGATTTACATAAAAATTTTGAATATTCATATTTA
1 AAATTTGAAAATTCACATTTTAATAATTTAAAAATTTACATAAAAATTTTAAATATTCACATCT-
8218642 AAAAATTTTTATTCAAA
65 AAAAATTTTTATTCAAA
* *
8218659 AAATTT-AACAATTTACA-TTTAA-AATTTAAAAATTTACAATTAAAA-TTTAAATATTCACATC
1 AAATTTGAA-AATTCACATTTTAATAATTTAAAAATTTAC-ATAAAAATTTTAAATATTCACATC
8218720 TAAAAATTTT
64 TAAAAATTTT
8218730 AAAATTTATT
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
79 9 0.15
80 27 0.44
81 13 0.21
82 13 0.21
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.42
Consensus pattern (81 bp):
AAATTTGAAAATTCACATTTTAATAATTTAAAAATTTACATAAAAATTTTAAATATTCACATCTA
AAAATTTTTATTCAAA
Found at i:8218931 original size:18 final size:18
Alignment explanation
Indices: 8218908--8218942 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8218898 GAAAATGTTA
*
8218908 AAAAATTAGTAAAAATTC
1 AAAAATTAATAAAAATTC
8218926 AAAAATTAATAAAAATT
1 AAAAATTAATAAAAATT
8218943 TGAGATTCGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.29
Consensus pattern (18 bp):
AAAAATTAATAAAAATTC
Found at i:8219163 original size:37 final size:36
Alignment explanation
Indices: 8219064--8219164 Score: 94
Period size: 37 Copynumber: 2.7 Consensus size: 36
8219054 AAAGATTCGT
* **
8219064 AATTCTAAATATTCATAAATAAAATAAAAAAATTCAC
1 AATTATAAA-ATTCATAAATAAAATTTAAAAATTCAC
* * * * *
8219101 AATTGTAAAAGTTTACAAATAAAATTTAAATATTTAC
1 AATTATAAAA-TTCATAAATAAAATTTAAAAATTCAC
*
8219138 AATTATAAAGATTCATAAATGAAATTT
1 AATTATAAA-ATTCATAAATAAAATTT
8219165 GAAAGTTTCA
Statistics
Matches: 51, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
36 1 0.02
37 49 0.96
38 1 0.02
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.35
Consensus pattern (36 bp):
AATTATAAAATTCATAAATAAAATTTAAAAATTCAC
Found at i:8220180 original size:27 final size:26
Alignment explanation
Indices: 8220127--8220181 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
8220117 AAATTAAATT
* *
8220127 TTACATAAAAATTAAAAATTAAAAAA
1 TTACATAAAAAATAAAAATAAAAAAA
8220153 TTACATTAAAAAATAAAAA-AAAACAAA
1 TTACA-TAAAAAATAAAAATAAAA-AAA
8220180 TT
1 TT
8220182 CAATTTAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.25
Consensus pattern (26 bp):
TTACATAAAAAATAAAAATAAAAAAA
Found at i:8220190 original size:21 final size:22
Alignment explanation
Indices: 8220166--8220207 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
8220156 CATTAAAAAA
8220166 TAAAAAAAAACAAA-TTCAATT
1 TAAAAAAAAACAAACTTCAATT
*
8220187 TAAAAACAAACAAACTTCAAT
1 TAAAAAAAAACAAACTTCAAT
8220208 AAAAACGACT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.64, C:0.14, G:0.00, T:0.21
Consensus pattern (22 bp):
TAAAAAAAAACAAACTTCAATT
Found at i:8220212 original size:21 final size:19
Alignment explanation
Indices: 8220164--8220212 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 19
8220154 TACATTAAAA
8220164 AATAAAAAAAAACAAATTC
1 AATAAAAAAAAACAAATTC
*
8220183 AATTTAAAAACAAACAAACTTC
1 AA--TAAAAAAAAACAAA-TTC
8220205 AATAAAAA
1 AATAAAAA
8220213 CGACTTTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 2 0.08
20 6 0.23
21 13 0.50
22 5 0.19
ACGTcount: A:0.69, C:0.12, G:0.00, T:0.18
Consensus pattern (19 bp):
AATAAAAAAAAACAAATTC
Found at i:8221609 original size:29 final size:28
Alignment explanation
Indices: 8221535--8221611 Score: 73
Period size: 31 Copynumber: 2.6 Consensus size: 28
8221525 TTTACAGCAT
* * ** *
8221535 TTTTAAAAAGTTCAAAAAAACCTTAAAT
1 TTTTAAAAAATTAAAAAAAAAATTAAAA
*
8221563 TTTTTAAAAATCTGAAAAAAAAAATTGAAAA
1 TTTTAAAAAAT-T-AAAAAAAAAATT-AAAA
8221594 TTTTAAAAAATTAAAAAA
1 TTTTAAAAAATTAAAAAA
8221612 TATGTAAAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
28 9 0.23
29 7 0.18
30 10 0.26
31 13 0.33
ACGTcount: A:0.60, C:0.05, G:0.04, T:0.31
Consensus pattern (28 bp):
TTTTAAAAAATTAAAAAAAAAATTAAAA
Found at i:8221739 original size:25 final size:25
Alignment explanation
Indices: 8221711--8221768 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
8221701 CTCAAAATTT
8221711 TAAAAATTTGAAAATCTAAAAAACC
1 TAAAAATTTGAAAATCTAAAAAACC
* * * * *
8221736 TAAATATTTGGAAATTTTAAAAATC
1 TAAAAATTTGAAAATCTAAAAAACC
8221761 TAAAAATT
1 TAAAAATT
8221769 ATATAAACAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.55, C:0.07, G:0.05, T:0.33
Consensus pattern (25 bp):
TAAAAATTTGAAAATCTAAAAAACC
Found at i:8222023 original size:16 final size:16
Alignment explanation
Indices: 8221997--8222053 Score: 62
Period size: 18 Copynumber: 3.4 Consensus size: 16
8221987 TTTTGGTAGA
8221997 TTTTAATTCTTAG-TT
1 TTTTAATTCTTAGATT
8222012 TTTTATATTCTTAGATT
1 TTTTA-ATTCTTAGATT
*
8222029 TTTTAAATTTTTTAGATAT
1 TTTT-AA-TTCTTAGAT-T
8222048 TTTTAA
1 TTTTAA
8222054 ATTTATATGG
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
15 5 0.14
16 8 0.22
17 7 0.19
18 11 0.31
19 5 0.14
ACGTcount: A:0.26, C:0.04, G:0.05, T:0.65
Consensus pattern (16 bp):
TTTTAATTCTTAGATT
Found at i:8222043 original size:18 final size:19
Alignment explanation
Indices: 8222022--8222057 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8222012 TTTTATATTC
8222022 TTAGAT-TTTTTAAATTTT
1 TTAGATATTTTTAAATTTT
8222040 TTAGATATTTTTAAATTT
1 TTAGATATTTTTAAATTT
8222058 ATATGGTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.64
Consensus pattern (19 bp):
TTAGATATTTTTAAATTTT
Found at i:8222182 original size:9 final size:9
Alignment explanation
Indices: 8222170--8222220 Score: 57
Period size: 9 Copynumber: 5.3 Consensus size: 9
8222160 AGATTTTTCC
8222170 TTTTTAATT
1 TTTTTAATT
8222179 TTTTTATATT
1 TTTTTA-ATT
8222189 TATTTTAATT
1 T-TTTTAATT
**
8222199 TTTAGAATT
1 TTTTTAATT
8222208 TTTTTCAATT
1 TTTTT-AATT
8222218 TTT
1 TTT
8222221 CAAAAATTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
9 15 0.43
10 15 0.43
11 5 0.14
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.73
Consensus pattern (9 bp):
TTTTTAATT
Found at i:8222208 original size:19 final size:19
Alignment explanation
Indices: 8222170--8222220 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
8222160 AGATTTTTCC
**
8222170 TTTTTAATTTTTTTATATT
1 TTTTTAATTTTTAGATATT
8222189 TATTTTAATTTTTAGA-ATT
1 T-TTTTAATTTTTAGATATT
8222208 TTTTTCAATTTTT
1 TTTTT-AATTTTT
8222221 CAAAAATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 4 0.14
19 12 0.43
20 12 0.43
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.73
Consensus pattern (19 bp):
TTTTTAATTTTTAGATATT
Found at i:8222238 original size:26 final size:26
Alignment explanation
Indices: 8222208--8222272 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 26
8222198 TTTTAGAATT
8222208 TTTTTCAATTTTTCAAAAATTTTTAGA
1 TTTTTCAATTTTTCAAAAATTTTTA-A
* *
8222235 TTTTTC-ATTTTTCATATATTTTTAA
1 TTTTTCAATTTTTCAAAAATTTTTAA
8222260 -TTTTCATATTTTT
1 TTTTTCA-ATTTTT
8222273 TCCAAAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
24 5 0.15
25 1 0.03
26 22 0.65
27 6 0.18
ACGTcount: A:0.26, C:0.08, G:0.02, T:0.65
Consensus pattern (26 bp):
TTTTTCAATTTTTCAAAAATTTTTAA
Found at i:8222255 original size:18 final size:18
Alignment explanation
Indices: 8222234--8222274 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
8222224 AAATTTTTAG
*
8222234 ATTTTTCATTTTTCATAT
1 ATTTTTCAATTTTCATAT
8222252 ATTTTT-AATTTTCATAT
1 ATTTTTCAATTTTCATAT
8222269 -TTTTTC
1 ATTTTTC
8222275 CAAAAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 5 0.24
17 10 0.48
18 6 0.29
ACGTcount: A:0.22, C:0.10, G:0.00, T:0.68
Consensus pattern (18 bp):
ATTTTTCAATTTTCATAT
Found at i:8222802 original size:18 final size:17
Alignment explanation
Indices: 8222770--8222812 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
8222760 AAAACATAAT
*
8222770 AAAAAAAAAAAGAGAGAG
1 AAAAAAGAAAAGAGA-AG
* *
8222788 AAAAAAGAAAGGAGAAT
1 AAAAAAGAAAAGAGAAG
8222805 AAAAAAGA
1 AAAAAAGA
8222813 CAACCACCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (17 bp):
AAAAAAGAAAAGAGAAG
Found at i:8222808 original size:17 final size:17
Alignment explanation
Indices: 8222757--8222812 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
8222747 AGTAAAAGAT
* *
8222757 AAGAAAACATAATAAAA
1 AAGAAAAGAGAATAAAA
* *
8222774 AAAAAAAGAGAGAGAAAA
1 AAGAAAAGAGA-ATAAAA
*
8222792 AAGAAAGGAGAATAAAA
1 AAGAAAAGAGAATAAAA
8222809 AAGA
1 AAGA
8222813 CAACCACCCA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
17 17 0.55
18 14 0.45
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.05
Consensus pattern (17 bp):
AAGAAAAGAGAATAAAA
Found at i:8223716 original size:14 final size:14
Alignment explanation
Indices: 8223685--8223730 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
8223675 TTTAGAATAG
8223685 ATAATTTAATTATAAA
1 ATAA-TTAATT-TAAA
8223701 ATAATTAATTTAAA
1 ATAATTAATTTAAA
* *
8223715 ATAACTATTTTAAA
1 ATAATTAATTTAAA
8223729 AT
1 AT
8223731 TTTATTAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 18 0.64
15 6 0.21
16 4 0.14
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.43
Consensus pattern (14 bp):
ATAATTAATTTAAA
Found at i:8224308 original size:18 final size:18
Alignment explanation
Indices: 8224285--8224323 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
8224275 TTAAAAAATA
8224285 TTATATATTAATTTATAT
1 TTATATATTAATTTATAT
* *
8224303 TTATATTTTATTTTATAT
1 TTATATATTAATTTATAT
8224321 TTA
1 TTA
8224324 ATTTTAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTATATATTAATTTATAT
Found at i:8227451 original size:21 final size:19
Alignment explanation
Indices: 8227421--8227469 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 19
8227411 TTAAAAAATT
*
8227421 TAATAATTCTTTATATAAAAA
1 TAATATTTC-TTA-ATAAAAA
*
8227442 TAATATTTCTTAGTAAAAA
1 TAATATTTCTTAATAAAAA
8227461 TAATCATTT
1 TAAT-ATTT
8227470 GAAATTCTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.40
20 7 0.28
21 8 0.32
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (19 bp):
TAATATTTCTTAATAAAAA
Found at i:8228172 original size:27 final size:27
Alignment explanation
Indices: 8228085--8228173 Score: 76
Period size: 27 Copynumber: 3.3 Consensus size: 27
8228075 TTCTTATTCT
*
8228085 TTTTTCATTCTTCTTTTC-TCTTC-CTC
1 TTTTTC-TTCTTCTTTTCTTCTTCTATC
**
8228111 TCATTCTTCTTCTTTTCTTCTTCTATC
1 TTTTTCTTCTTCTTTTCTTCTTCTATC
* * * *
8228138 TTTCTCTTTTTTTTTTCTTTTTCTCAT-
1 TTTTTCTTCTTCTTTTCTTCTTCT-ATC
8228165 TTTTTCTTC
1 TTTTTCTTC
8228174 CTTTCTCTAT
Statistics
Matches: 49, Mismatches: 11, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
25 11 0.22
26 9 0.18
27 27 0.55
28 2 0.04
ACGTcount: A:0.04, C:0.26, G:0.00, T:0.70
Consensus pattern (27 bp):
TTTTTCTTCTTCTTTTCTTCTTCTATC
Found at i:8228369 original size:15 final size:15
Alignment explanation
Indices: 8228349--8228380 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8228339 ATCAAAGGTT
*
8228349 AAAAAGTAAAAAAAA
1 AAAAAGGAAAAAAAA
8228364 AAAAAGGAAAAAAAA
1 AAAAAGGAAAAAAAA
8228379 AA
1 AA
8228381 GTGGGATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.88, C:0.00, G:0.09, T:0.03
Consensus pattern (15 bp):
AAAAAGGAAAAAAAA
Found at i:8230078 original size:32 final size:30
Alignment explanation
Indices: 8230033--8230099 Score: 84
Period size: 32 Copynumber: 2.2 Consensus size: 30
8230023 ATTTTGGTAT
8230033 TATTTTGACATGATTTTATATTTATT-GCATGA
1 TATTTTGACATGATTTTA-A--TATTGGCATGA
8230065 TATTCTTG-CATGATTTTAATATTGGCATGA
1 TATT-TTGACATGATTTTAATATTGGCATGA
8230095 TATTT
1 TATTT
8230100 ATAATATTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
29 5 0.15
30 10 0.30
31 1 0.03
32 14 0.42
33 3 0.09
ACGTcount: A:0.27, C:0.07, G:0.13, T:0.52
Consensus pattern (30 bp):
TATTTTGACATGATTTTAATATTGGCATGA
Found at i:8230094 original size:17 final size:18
Alignment explanation
Indices: 8230072--8230116 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 18
8230062 TGATATTCTT
8230072 GCATGATTT-TAATATTG
1 GCATGATTTATAATATTG
*
8230089 GCATGATATTTATAATATTT
1 GCATG--ATTTATAATATTG
8230109 GCATGATT
1 GCATGATT
8230117 GCATGATATG
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
17 5 0.21
18 3 0.12
19 4 0.17
20 12 0.50
ACGTcount: A:0.31, C:0.07, G:0.16, T:0.47
Consensus pattern (18 bp):
GCATGATTTATAATATTG
Found at i:8230106 original size:20 final size:19
Alignment explanation
Indices: 8230077--8230115 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
8230067 TTCTTGCATG
8230077 ATTTTAATATTGGCATGAT
1 ATTTTAATATTGGCATGAT
*
8230096 ATTTATAATATTTGCATGAT
1 ATTT-TAATATTGGCATGAT
8230116 TGCATGATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.33, C:0.05, G:0.13, T:0.49
Consensus pattern (19 bp):
ATTTTAATATTGGCATGAT
Found at i:8230584 original size:23 final size:21
Alignment explanation
Indices: 8230558--8230628 Score: 65
Period size: 23 Copynumber: 3.2 Consensus size: 21
8230548 ATTTTCCATG
8230558 TGTACTAACCTATTTGTTTATTT
1 TGTACTAA-CTATTTGTTTA-TT
*
8230581 TGTAACTAA-TGATTT-TTTATG
1 TGT-ACTAACT-ATTTGTTTATT
8230602 TGTACTAATCTATTTGTTTACTT
1 TGTACTAA-CTATTTGTTTA-TT
8230625 TGTA
1 TGTA
8230629 AATTTTGATT
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
20 5 0.12
21 8 0.20
22 10 0.25
23 12 0.30
24 5 0.12
ACGTcount: A:0.24, C:0.10, G:0.11, T:0.55
Consensus pattern (21 bp):
TGTACTAACTATTTGTTTATT
Found at i:8230588 original size:24 final size:22
Alignment explanation
Indices: 8230561--8230629 Score: 63
Period size: 22 Copynumber: 3.0 Consensus size: 22
8230551 TTCCATGTGT
8230561 ACTAACCTATTTGTTTATTTTGTA
1 ACTAA-CTATTTGTTTA-TTTGTA
*
8230585 ACTAA-TGATTT-TTTATGTGT-
1 ACTAACT-ATTTGTTTATTTGTA
8230605 ACTAATCTATTTGTTTACTTTGTA
1 ACTAA-CTATTTGTTTA-TTTGTA
8230629 A
1 A
8230630 ATTTTGATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 12
0.73 0.04 0.24
Matches are distributed among these distances:
20 5 0.14
21 8 0.22
22 10 0.27
23 8 0.22
24 6 0.16
ACGTcount: A:0.26, C:0.10, G:0.10, T:0.54
Consensus pattern (22 bp):
ACTAACTATTTGTTTATTTGTA
Found at i:8230610 original size:20 final size:20
Alignment explanation
Indices: 8230545--8230610 Score: 53
Period size: 21 Copynumber: 3.1 Consensus size: 20
8230535 GTGATTATTT
**
8230545 ATGATTTTCCATGTGTACTA
1 ATGATTTTTTATGTGTACTA
*
8230565 ACCT-ATTTGTTTATTTTGTAACTA
1 A--TGATTT-TTTA-TGTGT-ACTA
8230589 ATGATTTTTTATGTGTACTA
1 ATGATTTTTTATGTGTACTA
8230609 AT
1 AT
8230611 CTATTTGTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 12
0.69 0.08 0.23
Matches are distributed among these distances:
20 7 0.19
21 8 0.22
22 8 0.22
23 8 0.22
24 5 0.14
ACGTcount: A:0.26, C:0.11, G:0.12, T:0.52
Consensus pattern (20 bp):
ATGATTTTTTATGTGTACTA
Found at i:8230654 original size:44 final size:44
Alignment explanation
Indices: 8230541--8230661 Score: 152
Period size: 44 Copynumber: 2.7 Consensus size: 44
8230531 TTATGTGATT
* * *
8230541 ATTTATGATTTTCCATGTGTACTAACCTATTTGTTTATTTTGTAA
1 ATTT-TGATTTTACATGTGTACTAATCTATTTGTTTACTTTGTAA
* ** **
8230586 CTAATGATTTTTTATGTGTACTAATCTATTTGTTTACTTTGTAA
1 ATTTTGATTTTACATGTGTACTAATCTATTTGTTTACTTTGTAA
*
8230630 ATTTTGATTTTACATGTGTACTAATTTATTTG
1 ATTTTGATTTTACATGTGTACTAATCTATTTG
8230662 ATTATCTGGG
Statistics
Matches: 63, Mismatches: 13, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
44 62 0.98
45 1 0.02
ACGTcount: A:0.25, C:0.09, G:0.12, T:0.55
Consensus pattern (44 bp):
ATTTTGATTTTACATGTGTACTAATCTATTTGTTTACTTTGTAA
Found at i:8231748 original size:130 final size:128
Alignment explanation
Indices: 8231514--8231764 Score: 333
Period size: 130 Copynumber: 1.9 Consensus size: 128
8231504 TGTAAACATG
* * *
8231514 TTTGTATGTATATTATTTCATTTATTTGGGAAAATCTTTGCCTTTTTATGTTTGTACATATTTTG
1 TTTGTATGTACATTATTTCATTTATTGGGGAAAATCTTTGCCTTTTAATGTTTGTACATATTTTG
* * * *
8231579 AATGTGAATTCTTGTTTTTACTATGTATTACATACATGTATTTGCATATACATTTTAAATATT
66 AATATGAATTCTTATTGTTACTATGTATCACATACATGTATTTGCATATACATTTTAAATATT
*** *
8231642 TTTGTATGTACATTATTTCATTTACTTGGGGGCCATCTTTGCCTTTGTAAT-TTTGTATATAGTT
1 TTTGTATGTACATTATTTCATTTA-TTGGGGAAAATCTTTGCCTTT-TAATGTTTGTACATA-TT
* * * *
8231706 TTGAATATGAATTCTTATTGTTACTATGTGTCGCATATATGTATTTGCATATACGTTTT
63 TTGAATATGAATTCTTATTGTTACTATGTATCACATACATGTATTTGCATATACATTTT
8231765 TATCCACGTA
Statistics
Matches: 105, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
128 23 0.22
129 26 0.25
130 56 0.53
ACGTcount: A:0.24, C:0.10, G:0.14, T:0.52
Consensus pattern (128 bp):
TTTGTATGTACATTATTTCATTTATTGGGGAAAATCTTTGCCTTTTAATGTTTGTACATATTTTG
AATATGAATTCTTATTGTTACTATGTATCACATACATGTATTTGCATATACATTTTAAATATT
Found at i:8231971 original size:13 final size:13
Alignment explanation
Indices: 8231953--8231977 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8231943 ATAAATATGA
8231953 ATTATTATTTTTT
1 ATTATTATTTTTT
8231966 ATTATTATTTTT
1 ATTATTATTTTT
8231978 ATACATGTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
ATTATTATTTTTT
Found at i:8239538 original size:2 final size:2
Alignment explanation
Indices: 8239531--8239572 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
8239521 CCACCTCCAT
8239531 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
8239573 CCCCCCCTTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:8240229 original size:3 final size:3
Alignment explanation
Indices: 8240223--8240265 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
8240213 CTTGTTGTTG
8240223 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
8240266 CATTCATTGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8249209 original size:24 final size:24
Alignment explanation
Indices: 8249158--8249210 Score: 72
Period size: 24 Copynumber: 2.1 Consensus size: 24
8249148 ATTATTATTA
8249158 TTTAAAATATTATGTTAAATTAAAAT
1 TTTAAAATATTATGTT--ATTAAAAT
8249184 TTTAAAATATATATGTT-TTAAAAT
1 TTTAAAATAT-TATGTTATTAAAAT
8249208 TTT
1 TTT
8249211 TGAAACTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
24 10 0.38
26 10 0.38
27 6 0.23
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (24 bp):
TTTAAAATATTATGTTATTAAAAT
Found at i:8249600 original size:16 final size:16
Alignment explanation
Indices: 8249579--8249612 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8249569 TAGAGTTTAA
*
8249579 ATTTTAATTTATAATT
1 ATTTTAATTTAAAATT
*
8249595 ATTTTATTTTAAAATT
1 ATTTTAATTTAAAATT
8249611 AT
1 AT
8249613 GATTTTTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
ATTTTAATTTAAAATT
Found at i:8249620 original size:21 final size:22
Alignment explanation
Indices: 8249579--8249631 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
8249569 TAGAGTTTAA
*
8249579 ATTTT-AATTTATAATTATTTT
1 ATTTTAAAATTATAATTATTTT
*
8249600 ATTTTAAAATTATGATT-TTTT
1 ATTTTAAAATTATAATTATTTT
**
8249621 AAATTAAAATT
1 ATTTTAAAATT
8249632 TTTTTTTGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 18 0.67
22 9 0.33
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (22 bp):
ATTTTAAAATTATAATTATTTT
Found at i:8252627 original size:2 final size:2
Alignment explanation
Indices: 8252622--8252649 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8252612 AAATGCTAGT
8252622 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8252650 CACATAAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8252927 original size:12 final size:11
Alignment explanation
Indices: 8252900--8252924 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
8252890 AGTTTGAGTC
8252900 AAATTTTATTA
1 AAATTTTATTA
8252911 AAATTTTATTA
1 AAATTTTATTA
8252922 AAA
1 AAA
8252925 ATTAAAAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
AAATTTTATTA
Found at i:8253615 original size:21 final size:21
Alignment explanation
Indices: 8253590--8253629 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
8253580 TTTGATTATT
8253590 ATTA-TATTATTTTTTATTTTG
1 ATTATTATTA-TTTTTATTTTG
8253611 ATTATTATTATTTTTATTT
1 ATTATTATTATTTTTATTT
8253630 AAAAGTTGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (21 bp):
ATTATTATTATTTTTATTTTG
Found at i:8253621 original size:15 final size:15
Alignment explanation
Indices: 8253580--8253624 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
8253570 CTCTTTATAG
8253580 TTTGATTATTATTAT
1 TTTGATTATTATTAT
*
8253595 ATT-ATT-TT-TTAT
1 TTTGATTATTATTAT
8253607 TTTGATTATTATTAT
1 TTTGATTATTATTAT
8253622 TTT
1 TTT
8253625 TATTTAAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
12 6 0.24
13 5 0.20
14 5 0.20
15 9 0.36
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.71
Consensus pattern (15 bp):
TTTGATTATTATTAT
Found at i:8264634 original size:22 final size:20
Alignment explanation
Indices: 8264593--8264643 Score: 66
Period size: 22 Copynumber: 2.4 Consensus size: 20
8264583 TATGTCACTA
8264593 TAAAAATTAAATTTTAAATTT
1 TAAAAA-TAAATTTTAAATTT
*
8264614 TAAAAATAAATATATTTAATTT
1 TAAAAATAAAT-T-TTAAATTT
8264636 TAAAAATA
1 TAAAAATA
8264644 TTTTTAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 5 0.19
21 7 0.26
22 15 0.56
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
TAAAAATAAATTTTAAATTT
Found at i:8268901 original size:73 final size:73
Alignment explanation
Indices: 8268782--8268927 Score: 265
Period size: 73 Copynumber: 2.0 Consensus size: 73
8268772 TACCAAGTTA
* *
8268782 CTTGGATATGCTTGTGAAAGTTGGGAAAGGTAGCAATGCGAATGATTGCTTTGACTATGTCTATC
1 CTTGGATATGCTTGTGAAAGTTGGAAAAGGTAGCAATGCCAATGATTGCTTTGACTATGTCTATC
8268847 GATGTTTG
66 GATGTTTG
*
8268855 CTTGGATATGCTTGTGAGAGTTGGAAAAGGTAGCAATGCCAATGATTGCTTTGACTATGTCTATC
1 CTTGGATATGCTTGTGAAAGTTGGAAAAGGTAGCAATGCCAATGATTGCTTTGACTATGTCTATC
8268920 GATGTTTG
66 GATGTTTG
8268928 TTATTGTTAA
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 70 1.00
ACGTcount: A:0.25, C:0.12, G:0.28, T:0.36
Consensus pattern (73 bp):
CTTGGATATGCTTGTGAAAGTTGGAAAAGGTAGCAATGCCAATGATTGCTTTGACTATGTCTATC
GATGTTTG
Found at i:8271462 original size:43 final size:45
Alignment explanation
Indices: 8271401--8271491 Score: 159
Period size: 43 Copynumber: 2.1 Consensus size: 45
8271391 CCCTATGCCG
8271401 GATTGAAACGTTAAATGTTTTCTGA-A-GTATGAAATGAATAATA
1 GATTGAAACGTTAAATGTTTTCTGACATGTATGAAATGAATAATA
*
8271444 GATTGAAACGTTACATGTTTTCTGACATGTATGAAATGAATAATA
1 GATTGAAACGTTAAATGTTTTCTGACATGTATGAAATGAATAATA
8271489 GAT
1 GAT
8271492 ATCCGTATTT
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
43 24 0.53
44 1 0.02
45 20 0.44
ACGTcount: A:0.40, C:0.07, G:0.19, T:0.35
Consensus pattern (45 bp):
GATTGAAACGTTAAATGTTTTCTGACATGTATGAAATGAATAATA
Found at i:8274335 original size:42 final size:42
Alignment explanation
Indices: 8274288--8274472 Score: 185
Period size: 42 Copynumber: 4.4 Consensus size: 42
8274278 CCTCAACTAT
*
8274288 CTCTACCTTTGGTACGTCTTCAGGTTCCTTCTTTTCAACCAA
1 CTCTACCTTTGGTACCTCTTCAGGTTCCTTCTTTTCAACCAA
* * * **
8274330 TTCTACTTTTGGTACCTTTTCAGGTTCCTTCTTTTTGA-CATA
1 CTCTACCTTTGGTACCTCTTCAGGTTCCTTCTTTTCAACCA-A
* * * * *
8274372 CT-TAACTCTTGGTTCCTCTTCAGGTTGCTTCTTATCAACCAG
1 CTCTACCT-TTGGTACCTCTTCAGGTTCCTTCTTTTCAACCAA
** * * *
8274414 CTCTACCTTTGGTACCTCTTCATCTTCCTTTTTTTCAACTAC
1 CTCTACCTTTGGTACCTCTTCAGGTTCCTTCTTTTCAACCAA
*
8274456 CTCTTCCTTTGGTACCT
1 CTCTACCTTTGGTACCT
8274473 TTTGTTTAAT
Statistics
Matches: 113, Mismatches: 26, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
41 5 0.04
42 102 0.90
43 6 0.05
ACGTcount: A:0.15, C:0.29, G:0.11, T:0.45
Consensus pattern (42 bp):
CTCTACCTTTGGTACCTCTTCAGGTTCCTTCTTTTCAACCAA
Found at i:8274468 original size:84 final size:84
Alignment explanation
Indices: 8274280--8274472 Score: 212
Period size: 84 Copynumber: 2.3 Consensus size: 84
8274270 AATCTTTTCC
* * * *
8274280 TCAACTATCTCTACCTTTGGTACGTCTTCAGGTTCCTTCTTTTCAACCAATTCTACTTTTGGTAC
1 TCAACTA-CTCTACCTTTGGTACCTCTTCAGGTTCCTTCTTATCAACCAACTCTACCTTTGGTAC
* *
8274345 CTTTTCAGGTTCCTTCTTTT
65 CTCTTCAGCTTCCTTCTTTT
* * * * *
8274365 T-GACATACT-TAACTCTTGGTTCCTCTTCAGGTTGCTTCTTATCAACCAGCTCTACCTTTGGTA
1 TCAAC-TACTCTACCT-TTGGTACCTCTTCAGGTTCCTTCTTATCAACCAACTCTACCTTTGGTA
*
8274428 CCTCTTCATCTTCCTT-TTTT
64 CCTCTTCAGCTTCCTTCTTTT
*
8274448 TCAACTACCTCTTCCTTTGGTACCT
1 TCAACTA-CTCTACCTTTGGTACCT
8274473 TTTGTTTAAT
Statistics
Matches: 87, Mismatches: 16, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
83 11 0.13
84 70 0.80
85 6 0.07
ACGTcount: A:0.16, C:0.29, G:0.10, T:0.45
Consensus pattern (84 bp):
TCAACTACTCTACCTTTGGTACCTCTTCAGGTTCCTTCTTATCAACCAACTCTACCTTTGGTACC
TCTTCAGCTTCCTTCTTTT
Found at i:8279016 original size:6 final size:6
Alignment explanation
Indices: 8279005--8279029 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8278995 TCAGAAAATC
8279005 TTAATT TTAATT TTAATT TTAATT T
1 TTAATT TTAATT TTAATT TTAATT T
8279030 ATTTTGTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TTAATT
Found at i:8279909 original size:25 final size:25
Alignment explanation
Indices: 8279859--8279912 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
8279849 ATATTTTATA
*
8279859 ATTTGTATGTTTTATTTATGATTTT
1 ATTTGCATGTTTTATTTATGATTTT
* *
8279884 ATTTGCATGATTTTTTTTATTA-TTT
1 ATTTGCATG-TTTTATTTATGATTTT
8279909 ATTT
1 ATTT
8279913 TTCATGAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.20, C:0.02, G:0.09, T:0.69
Consensus pattern (25 bp):
ATTTGCATGTTTTATTTATGATTTT
Found at i:8279962 original size:2 final size:2
Alignment explanation
Indices: 8279955--8279983 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8279945 ATGGATAGTG
8279955 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8279984 GCACGAGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Done.