Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 49 of 402
Found at i:9469533 original size:19 final size:18
Alignment explanation
Indices: 9469479--9469543 Score: 69
Period size: 19 Copynumber: 3.4 Consensus size: 18
9469469 TGTAAATTTT
* *
9469479 TTTTAAAAATCT-AAAAT
1 TTTTAAAAATTTGAAAAA
9469496 TTTTAAACAGATTTTGAAAAA
1 TTTTAAA-A-A-TTTGAAAAA
9469517 TTTTAAAAATTTGGAAAAA
1 TTTTAAAAATTT-GAAAAA
9469536 TTTTAAAA
1 TTTTAAAA
9469544 GATTAAAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
17 7 0.17
18 4 0.10
19 16 0.39
20 3 0.07
21 11 0.27
ACGTcount: A:0.51, C:0.03, G:0.06, T:0.40
Consensus pattern (18 bp):
TTTTAAAAATTTGAAAAA
Found at i:9469549 original size:27 final size:26
Alignment explanation
Indices: 9469519--9469580 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
9469509 TTGAAAAATT
* *
9469519 TTAAAAATTTGGAAAAATTTTAAAAGA
1 TTAAAAATCT-GAAAAATTTTAAAAAA
*
9469546 TTAAAAAATCTGAAACATTTTAAAAAA
1 TT-AAAAATCTGAAAAATTTTAAAAAA
9469573 TTATAAAA
1 TTA-AAAA
9469581 ATAAAAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 1 0.03
27 22 0.73
28 7 0.23
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.32
Consensus pattern (26 bp):
TTAAAAATCTGAAAAATTTTAAAAAA
Found at i:9469553 original size:19 final size:19
Alignment explanation
Indices: 9469512--9469582 Score: 56
Period size: 19 Copynumber: 3.8 Consensus size: 19
9469502 ACAGATTTTG
**
9469512 AAAAATTTTAAAAATTTGG
1 AAAAATTTTAAAAATTTAA
9469531 AAAAATTTTAAAAGA-TT-A
1 AAAAATTTTAAAA-ATTTAA
* * * *
9469549 AAAAATCTGAAACATTTTA
1 AAAAATTTTAAAAATTTAA
*
9469568 AAAAATTATAAAAAT
1 AAAAATTTTAAAAAT
9469583 AAAAAATTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
17 1 0.02
18 12 0.29
19 27 0.66
20 1 0.02
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.32
Consensus pattern (19 bp):
AAAAATTTTAAAAATTTAA
Found at i:9469587 original size:16 final size:17
Alignment explanation
Indices: 9469566--9469597 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
9469556 TGAAACATTT
9469566 TAAAAAATTAT-AAAAA
1 TAAAAAATTATGAAAAA
9469582 TAAAAAATTATGAAAA
1 TAAAAAATTATGAAAA
9469598 GGAAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (17 bp):
TAAAAAATTATGAAAAA
Found at i:9469603 original size:17 final size:16
Alignment explanation
Indices: 9469567--9469605 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
9469557 GAAACATTTT
*
9469567 AAAAAATTATAAAAAT
1 AAAAAATTATAAAAAG
*
9469583 AAAAAATTATGAAAAGG
1 AAAAAATTAT-AAAAAG
9469600 AAAAAA
1 AAAAAA
9469606 AAAGAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.74, C:0.00, G:0.08, T:0.18
Consensus pattern (16 bp):
AAAAAATTATAAAAAG
Found at i:9469649 original size:20 final size:20
Alignment explanation
Indices: 9469611--9469649 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
9469601 AAAAAAAAGA
*
9469611 AAAAATCTTAAAAATTTAAT
1 AAAAATCTTAAAAAATTAAT
9469631 AAAAATC-TAAGAAAATTAA
1 AAAAATCTTAA-AAAATTAA
9469650 AAATTTTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.64, C:0.05, G:0.03, T:0.28
Consensus pattern (20 bp):
AAAAATCTTAAAAAATTAAT
Found at i:9469915 original size:10 final size:9
Alignment explanation
Indices: 9469875--9470006 Score: 60
Period size: 9 Copynumber: 14.6 Consensus size: 9
9469865 AATTTTTCAG
9469875 TAAAATTTT
1 TAAAATTTT
* *
9469884 TAATTATTTA
1 TAA-AATTTT
*
9469894 CAAAATTTT
1 TAAAATTTT
9469903 TAAAATGTTT
1 TAAAAT-TTT
9469913 T--AATTTT
1 TAAAATTTT
*
9469920 ATGAAATTTT
1 -TAAAATTTT
9469930 GT-AAATTTT
1 -TAAAATTTT
*
9469939 TAAAAATTGT
1 T-AAAATTTT
*
9469949 TAAAAATTT
1 TAAAATTTT
*
9469958 T--CATTTT
1 TAAAATTTT
*
9469965 T-TAATTTT
1 TAAAATTTT
9469973 TAAAATTTTT
1 TAAAA-TTTT
*
9469983 TAAAAATTTA
1 T-AAAATTTT
*
9469993 CAAAATTTT
1 TAAAATTTT
*
9470002 GAAAA
1 TAAAA
9470007 AATTTGAGAT
Statistics
Matches: 94, Mismatches: 18, Indels: 22
0.70 0.13 0.16
Matches are distributed among these distances:
7 8 0.09
8 11 0.12
9 39 0.41
10 32 0.34
11 4 0.04
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (9 bp):
TAAAATTTT
Found at i:9469997 original size:20 final size:20
Alignment explanation
Indices: 9469974--9470011 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
9469964 TTTAATTTTT
**
9469974 AAAATTTTTTAAAAATTTAC
1 AAAATTTTGAAAAAATTTAC
9469994 AAAATTTTGAAAAAATTT
1 AAAATTTTGAAAAAATTT
9470012 GAGATTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (20 bp):
AAAATTTTGAAAAAATTTAC
Found at i:9470136 original size:19 final size:19
Alignment explanation
Indices: 9470112--9470170 Score: 84
Period size: 19 Copynumber: 3.1 Consensus size: 19
9470102 CATGTTTTTT
*
9470112 ATTTTTTAAAAATTTCAAA
1 ATTTTTTAAAAATTTTAAA
9470131 A-TTTTTAAAAATTCTTAAA
1 ATTTTTTAAAAATT-TTAAA
*
9470150 ATTTTTTAAAATTTTTAAA
1 ATTTTTTAAAAATTTTAAA
9470169 AT
1 AT
9470171 AATTTATTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
18 12 0.33
19 13 0.36
20 11 0.31
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (19 bp):
ATTTTTTAAAAATTTTAAA
Found at i:9470143 original size:10 final size:10
Alignment explanation
Indices: 9470114--9470169 Score: 64
Period size: 10 Copynumber: 5.9 Consensus size: 10
9470104 TGTTTTTTAT
9470114 TTTTTAAAAA
1 TTTTTAAAAA
*
9470124 --TTTCAAAA
1 TTTTTAAAAA
9470132 TTTTTAAAAA
1 TTTTTAAAAA
*
9470142 TTCTT-AAAA
1 TTTTTAAAAA
*
9470151 TTTTTTAAAA
1 TTTTTAAAAA
9470161 TTTTTAAAA
1 TTTTTAAAA
9470170 TAATTTATTT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
8 7 0.18
9 8 0.21
10 23 0.61
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (10 bp):
TTTTTAAAAA
Found at i:9470150 original size:9 final size:9
Alignment explanation
Indices: 9470114--9470170 Score: 69
Period size: 9 Copynumber: 6.1 Consensus size: 9
9470104 TGTTTTTTAT
9470114 TTTTTAAAA
1 TTTTTAAAA
* *
9470123 ATTTCAAAA
1 TTTTTAAAA
9470132 TTTTTAAAAA
1 TTTTT-AAAA
*
9470142 TTCTTAAAA
1 TTTTTAAAA
9470151 TTTTTTAAAA
1 -TTTTTAAAA
9470161 TTTTTAAAA
1 TTTTTAAAA
9470170 T
1 T
9470171 AATTTATTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
9 24 0.60
10 16 0.40
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.51
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:9470176 original size:19 final size:19
Alignment explanation
Indices: 9470116--9470208 Score: 59
Period size: 19 Copynumber: 4.9 Consensus size: 19
9470106 TTTTTTATTT
* * *
9470116 TTTAAAAATTTCAAAAT-T
1 TTTAAAATTTTTAAAATAA
* **
9470134 TTTAAAAATTCTTAAAATTT
1 TTT-AAAATTTTTAAAATAA
9470154 TTTAAAATTTTTAAAATAA
1 TTTAAAATTTTTAAAATAA
*
9470173 TTT---ATTTTTCCAAAAGAA
1 TTTAAAATTTTT--AAAATAA
*
9470191 TTTATAATTTTTAAAATA
1 TTTAAAATTTTTAAAATA
9470209 TTCTAGATTT
Statistics
Matches: 60, Mismatches: 8, Indels: 13
0.74 0.10 0.16
Matches are distributed among these distances:
16 6 0.10
18 12 0.20
19 32 0.53
20 4 0.07
21 6 0.10
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.48
Consensus pattern (19 bp):
TTTAAAATTTTTAAAATAA
Found at i:9470239 original size:11 final size:10
Alignment explanation
Indices: 9470216--9470254 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
9470206 ATATTCTAGA
*
9470216 TTTTTAAATT
1 TTTTTGAATT
9470226 TTTTTGAATGT
1 TTTTTGAAT-T
9470237 TTTTTGAATT
1 TTTTTGAATT
9470247 TTTTTGAA
1 TTTTTGAA
9470255 ATATTCTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 17 0.63
11 10 0.37
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.67
Consensus pattern (10 bp):
TTTTTGAATT
Found at i:9471522 original size:20 final size:21
Alignment explanation
Indices: 9471497--9471537 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
9471487 AATTTAATAT
* *
9471497 AATATA-AATTTTAATAAAAA
1 AATATATAATTATAACAAAAA
9471517 AATATATAATTATAACAAAAA
1 AATATATAATTATAACAAAAA
9471538 TAAAAAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (21 bp):
AATATATAATTATAACAAAAA
Found at i:9471546 original size:19 final size:18
Alignment explanation
Indices: 9471510--9471548 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
9471500 ATAAATTTTA
* *
9471510 ATAAAAAAATATATAATT
1 ATAAAAAAATAAAAAATT
9471528 ATAACAAAAATAAAAAATT
1 ATAA-AAAAATAAAAAATT
9471547 AT
1 AT
9471549 TTATTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (18 bp):
ATAAAAAAATAAAAAATT
Found at i:9473247 original size:26 final size:27
Alignment explanation
Indices: 9473218--9473275 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
9473208 ATTTACCCAG
9473218 TTTCTCTT-ATTCTTCTCCTTTT-CTTC
1 TTTCTCTTGATTCTTCT-CTTTTCCTTC
* *
9473244 TTTCT-TTGTTTCTTCTTTTTTCCTTC
1 TTTCTCTTGATTCTTCTCTTTTCCTTC
9473270 TTTCTC
1 TTTCTC
9473276 AAACCCCAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
25 6 0.22
26 21 0.78
ACGTcount: A:0.02, C:0.28, G:0.02, T:0.69
Consensus pattern (27 bp):
TTTCTCTTGATTCTTCTCTTTTCCTTC
Found at i:9477897 original size:32 final size:31
Alignment explanation
Indices: 9477856--9477952 Score: 126
Period size: 31 Copynumber: 3.1 Consensus size: 31
9477846 TTAGGGTTTA
9477856 TATATTGAACATGTTATCTAATGGATAATTGT
1 TATATTGAACATGTTATCTAATGGAT-ATTGT
*
9477888 TATATTGAACATGTTATCTAATAGGAT-GTGT
1 TATATTGAACATGTTATCTAAT-GGATATTGT
* * *
9477919 CATATTGAACAAGTAATCTAATGGATATT-T
1 TATATTGAACATGTTATCTAATGGATATTGT
9477949 TATA
1 TATA
9477953 AATGTAACAT
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
30 8 0.14
31 23 0.40
32 22 0.39
33 4 0.07
ACGTcount: A:0.36, C:0.07, G:0.15, T:0.41
Consensus pattern (31 bp):
TATATTGAACATGTTATCTAATGGATATTGT
Found at i:9479043 original size:18 final size:18
Alignment explanation
Indices: 9478986--9479050 Score: 55
Period size: 18 Copynumber: 3.7 Consensus size: 18
9478976 TTGAAAACAA
**
9478986 AAAATAATAAAA-AACTT
1 AAAATAATAAAATAAAAT
**
9479003 AAAAATAATGAAAATGGAA-
1 -AAAATAAT-AAAATAAAAT
9479022 AAAATAATAAAATAAAAT
1 AAAATAATAAAATAAAAT
9479040 AAAATAA-AAAA
1 AAAATAATAAAA
9479051 CCTGTGATCG
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
17 11 0.29
18 23 0.61
19 4 0.11
ACGTcount: A:0.75, C:0.02, G:0.05, T:0.18
Consensus pattern (18 bp):
AAAATAATAAAATAAAAT
Found at i:9479779 original size:3 final size:3
Alignment explanation
Indices: 9479771--9479846 Score: 134
Period size: 3 Copynumber: 25.3 Consensus size: 3
9479761 AAGGAAATAA
* *
9479771 AGT AGT AGT AGT AGT AGT AAT AGT AAT AGT AGT AGT AGT AGT AGT AGT
1 AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT
9479819 AGT AGT AGT AGT AGT AGT AGT AGT AGT A
1 AGT AGT AGT AGT AGT AGT AGT AGT AGT A
9479847 ATAACAATAA
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 69 1.00
ACGTcount: A:0.37, C:0.00, G:0.30, T:0.33
Consensus pattern (3 bp):
AGT
Found at i:9479858 original size:3 final size:3
Alignment explanation
Indices: 9479845--9479963 Score: 88
Period size: 3 Copynumber: 41.0 Consensus size: 3
9479835 GTAGTAGTAG
* * * *
9479845 TAA TAA CAA TAA TAA TGA TAA TGA TAA TGA TAA T-A TAA T-A TAA T-A
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
9479890 TAA TTAC TATA TAA TAA T-G TAA TAC TAG TAA TAA -AA -AA TAA TAA
1 TAA -TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
9479934 TAA TAA TAC TAA TAA CAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
9479964 AAGTACTAGT
Statistics
Matches: 90, Mismatches: 19, Indels: 14
0.73 0.15 0.11
Matches are distributed among these distances:
2 11 0.12
3 75 0.83
4 4 0.04
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:9481726 original size:37 final size:37
Alignment explanation
Indices: 9481685--9481759 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
9481675 TCCATTTCCC
* * *
9481685 CTATTATCATGTTGACTTAGAAGAATTCTTTTTAACA
1 CTATTATCATATTGACTCAGAAGAATTCTTTTCAACA
9481722 CTATTATCATATTGACTCAGAAGAATTCTTTTCAACA
1 CTATTATCATATTGACTCAGAAGAATTCTTTTCAACA
9481759 C
1 C
9481760 CAATTCTCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.33, C:0.17, G:0.09, T:0.40
Consensus pattern (37 bp):
CTATTATCATATTGACTCAGAAGAATTCTTTTCAACA
Found at i:9492300 original size:29 final size:30
Alignment explanation
Indices: 9492257--9492326 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 30
9492247 GCTCAATTAA
* **
9492257 AAAAAAGTTAAATTAGTAA-AATAAAATAAT
1 AAAAAAGTAAAATTAAAAACAAT-AAATAAT
9492287 AAAAAAG-AAAATTAAAAACAATAAATAAT
1 AAAAAAGTAAAATTAAAAACAATAAATAAT
*
9492316 AAATAA-TAAAA
1 AAAAAAGTAAAA
9492327 AAACTTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
29 24 0.71
30 10 0.29
ACGTcount: A:0.73, C:0.01, G:0.04, T:0.21
Consensus pattern (30 bp):
AAAAAAGTAAAATTAAAAACAATAAATAAT
Found at i:9493224 original size:3 final size:3
Alignment explanation
Indices: 9493216--9493316 Score: 52
Period size: 3 Copynumber: 35.0 Consensus size: 3
9493206 GGAAATAAAG
* * *
9493216 TAA TAA TAA TAA T-A TAA T-A TAA T-A TAA T-A TAC TCCAC T-A TAC
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T--AA TAA TAA
* * * * * *
9493258 TAA T-A TAA TAC TAG TAA TAA AAA GAA TAA TAA TAA TAC TAA TAA CAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
9493305 CAA TAA TAA TAA
1 TAA TAA TAA TAA
9493317 AAGTACGAGT
Statistics
Matches: 76, Mismatches: 14, Indels: 16
0.72 0.13 0.15
Matches are distributed among these distances:
2 11 0.14
3 62 0.82
5 3 0.04
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:9493291 original size:24 final size:24
Alignment explanation
Indices: 9493262--9493316 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
9493252 CTATACTAAT
* * *
9493262 ATAATACTAGTAATAAAAAGAATA
1 ATAATAATACTAATAAAAACAATA
*
9493286 ATAATAATACTAATAACAACAATA
1 ATAATAATACTAATAAAAACAATA
9493310 ATAATAA
1 ATAATAA
9493317 AAGTACGAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.64, C:0.07, G:0.04, T:0.25
Consensus pattern (24 bp):
ATAATAATACTAATAAAAACAATA
Found at i:9496807 original size:25 final size:25
Alignment explanation
Indices: 9496773--9496820 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
9496763 TACCTCACAA
*
9496773 GAGTGTGAACCGAGGCAAGTAGGCT
1 GAGTGTGAACCAAGGCAAGTAGGCT
9496798 GAGTGTGAACCAAGGCAAGTAGG
1 GAGTGTGAACCAAGGCAAGTAGG
9496821 TTGATTTGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.15, G:0.40, T:0.15
Consensus pattern (25 bp):
GAGTGTGAACCAAGGCAAGTAGGCT
Found at i:9499842 original size:2 final size:2
Alignment explanation
Indices: 9499824--9499864 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
9499814 TATGTACCCA
*
9499824 CT CT C- CT CT CT CC CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
9499865 TAAGTTGCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (2 bp):
CT
Found at i:9501473 original size:20 final size:20
Alignment explanation
Indices: 9501443--9501543 Score: 75
Period size: 20 Copynumber: 5.1 Consensus size: 20
9501433 GGTTTTAGAA
9501443 TTCAC-TTAAGGTTTAGGGT
1 TTCACATTAAGGTTTAGGGT
* *
9501462 TTCACATTAAGG-ATACGAGT
1 TTCACATTAAGGTTTA-GGGT
*
9501482 TTCATC-TAAAGGTTTAGGGT
1 TTCA-CATTAAGGTTTAGGGT
* * *
9501502 TTCAAATTAGGGTTTTGGGT
1 TTCACATTAAGGTTTAGGGT
* *
9501522 CTC-CTATTAAGGTTTCGGGT
1 TTCAC-ATTAAGGTTTAGGGT
9501542 TT
1 TT
9501544 TATTTTAAGA
Statistics
Matches: 62, Mismatches: 14, Indels: 11
0.71 0.16 0.13
Matches are distributed among these distances:
19 7 0.11
20 52 0.84
21 3 0.05
ACGTcount: A:0.23, C:0.12, G:0.25, T:0.41
Consensus pattern (20 bp):
TTCACATTAAGGTTTAGGGT
Found at i:9501557 original size:7 final size:7
Alignment explanation
Indices: 9501547--9501571 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
9501537 CGGGTTTTAT
9501547 TTTAAGA
1 TTTAAGA
9501554 TTTAAGA
1 TTTAAGA
9501561 TTTAAGA
1 TTTAAGA
9501568 TTTA
1 TTTA
9501572 GAGTTTTAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (7 bp):
TTTAAGA
Found at i:9501639 original size:26 final size:26
Alignment explanation
Indices: 9501609--9501659 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
9501599 TCACCTAGGG
* *
9501609 TTTTAGGGTTTTATTGTT-GGGTTTTA
1 TTTTAGGATTTCATT-TTAGGGTTTTA
9501635 TTTTAGGATTTCATTTTAGGGTTTT
1 TTTTAGGATTTCATTTTAGGGTTTT
9501660 GGTGTTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 2 0.09
26 20 0.91
ACGTcount: A:0.14, C:0.02, G:0.24, T:0.61
Consensus pattern (26 bp):
TTTTAGGATTTCATTTTAGGGTTTTA
Found at i:9503090 original size:247 final size:244
Alignment explanation
Indices: 9502658--9503148 Score: 903
Period size: 247 Copynumber: 2.0 Consensus size: 244
9502648 AATCCTTAAG
*
9502658 ATTTCTGATGAAAAACCTTATAAATAGTACCCAAAATCACAAAAAAAATTGAAAAAAAGGTGTTA
1 ATTTCTGATGAAAAACCTTATAAATAGTACCCAAAATCACAAAAAAAATTGAAAAAAAGGTGATA
9502723 AAATAGATAAACGTGGTTATGAGGTTTTTTAGGTTTTTAGGTTAACACTAGAAGTCTTGGTTTTG
66 AAATAGATAAACGTGGTTATGAGGTTTTTTAGGTTTTTAGGTTAACACTAGAAGTCTTGGTTTTG
9502788 GTAATTAGTCCGTGATTCTAGTTTTTTTTATCATGGATTGAAAGTGGTTTGAATTTCTCAAAATT
131 GTAATTAGTCCGTGATTCTAGTTTTTTTTATCATGGATTGAAAGTGGTTTGAATTTCTCAAAATT
9502853 TTTCTCTTTTAT-GAAAAATTTGGAAATTTGGTTGAATATTTGAAGATT
196 TTTCTCTTTTATGGAAAAATTTGGAAATTTGGTTGAATATTTGAAGATT
9502901 ATTTCTGATGAAAAACCTTATAAATAGTACCCAAAATCACAAAAAAAAAAAATTGAAAAAAAGGT
1 ATTTCTGATGAAAAACCTTATAAATAGTACCCAAAATCAC----AAAAAAAATTGAAAAAAAGGT
* *
9502966 GATAAAATAGATAAGCGTGGTTATGAGGTTTTTTAGGTTTTTAGGTTAACACTGGAAGTCTTGGT
62 GATAAAATAGATAAACGTGGTTATGAGGTTTTTTAGGTTTTTAGGTTAACACTAGAAGTCTTGGT
*
9503031 TTTGGTAATTAGTCCGTGATTCTGGTTTTTTTTATCATGGATTGAAAGTGGTTTGAATTTCTCAA
127 TTTGGTAATTAGTCCGTGATTCTAGTTTTTTTTATCATGGATTGAAAGTGGTTTGAATTTCTCAA
9503096 AATTTTTCTCTTTTATGGAAAAATTTGGAAATTTGGTTGAATATTTGAAGATT
192 AATTTTTCTCTTTTATGGAAAAATTTGGAAATTTGGTTGAATATTTGAAGATT
9503149 CTATTTGAAC
Statistics
Matches: 239, Mismatches: 4, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
243 40 0.17
247 163 0.68
248 36 0.15
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.39
Consensus pattern (244 bp):
ATTTCTGATGAAAAACCTTATAAATAGTACCCAAAATCACAAAAAAAATTGAAAAAAAGGTGATA
AAATAGATAAACGTGGTTATGAGGTTTTTTAGGTTTTTAGGTTAACACTAGAAGTCTTGGTTTTG
GTAATTAGTCCGTGATTCTAGTTTTTTTTATCATGGATTGAAAGTGGTTTGAATTTCTCAAAATT
TTTCTCTTTTATGGAAAAATTTGGAAATTTGGTTGAATATTTGAAGATT
Found at i:9503505 original size:3 final size:3
Alignment explanation
Indices: 9503484--9503530 Score: 69
Period size: 3 Copynumber: 15.7 Consensus size: 3
9503474 TTTTAGAATT
*
9503484 TTA TT- TTA TTTA CTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
9503529 TT
1 TT
9503531 GACTCGATCG
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
2 2 0.05
3 35 0.88
4 3 0.08
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:9503561 original size:123 final size:123
Alignment explanation
Indices: 9503407--9503630 Score: 330
Period size: 123 Copynumber: 1.8 Consensus size: 123
9503397 TTATGGAACC
9503407 TGACTCGATCACAAGTATTTGTTTTTCTTTTCTCATTCCATTTTTTGTTTTG-ATT-TTT-TTTA
1 TGACTCGATCACAAGTATTTG-TTTTCTTTT-TCATTCCATTTTTTG-TTTGAATTATTTATTTA
* * *
9503469 TTTTATTTTAGAATTTTATTTTATTTACTATTATTATTATTATTATTATTATTATTATTAT
63 TTTTATTTTAGAATTTTATTTTACTTACTACTACTATTATTATTATTATTATTATTATTAT
**
9503530 TGACTCGATCGTAAGTATTT-TTTTCTTTTTTCATTCCATTTTTTGTTTGAATTATTTATTTATT
1 TGACTCGATCACAAGTATTTGTTTTC-TTTTTCATTCCATTTTTTGTTTGAATTATTTATTTATT
*
9503594 TTATTTTAGATTTTTATTTTACTTACTACTACTATTA
65 TTATTTTAGAATTTTATTTTACTTACTACTACTATTA
9503631 CTACTTCTAT
Statistics
Matches: 91, Mismatches: 6, Indels: 8
0.87 0.06 0.08
Matches are distributed among these distances:
120 4 0.04
121 23 0.25
122 7 0.08
123 57 0.63
ACGTcount: A:0.22, C:0.09, G:0.06, T:0.62
Consensus pattern (123 bp):
TGACTCGATCACAAGTATTTGTTTTCTTTTTCATTCCATTTTTTGTTTGAATTATTTATTTATTT
TATTTTAGAATTTTATTTTACTTACTACTACTATTATTATTATTATTATTATTATTAT
Found at i:9503595 original size:22 final size:22
Alignment explanation
Indices: 9503570--9503612 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
9503560 TCATTCCATT
*
9503570 TTTTGTTTGA-ATTATTTATTTA
1 TTTTATTTGAGATT-TTTATTTA
*
9503592 TTTTATTTTAGATTTTTATTT
1 TTTTATTTGAGATTTTTATTT
9503613 TACTTACTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.21, C:0.00, G:0.07, T:0.72
Consensus pattern (22 bp):
TTTTATTTGAGATTTTTATTTA
Found at i:9504391 original size:3 final size:3
Alignment explanation
Indices: 9504385--9504454 Score: 140
Period size: 3 Copynumber: 23.3 Consensus size: 3
9504375 CTACTACTAC
9504385 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
9504433 TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT T
9504455 TGTTTTGATT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 67 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:9504412 original size:757 final size:745
Alignment explanation
Indices: 9502952--9505142 Score: 2771
Period size: 757 Copynumber: 2.9 Consensus size: 745
9502942 AAAAAAAAAA
* * *
9502952 ATTGAAAAAAAGGTGATAAAATAGATAAGCGTGGTTATGAGGTTTTTTAGGTTTTTAGGTTAACA
1 ATTGAAAAAAAGGTGATAAAATAGA-CAGCTTGGTTATGA-GTTTTTTAGGTTTTTAGGTTAATA
9503017 CTGGAAGTCTTGGTTTTGGTAATTAGTCCGTGATTCTGG-TTTTTTTTATCATGGATTGAAAGTG
64 CTGGAAGTCTTGGTTTTGGTAATTAGTCCGTGATTCTGGTTTTTTTTTATCATGGATTGAAAGTG
*
9503081 GTTTGAATTTCTCAAAATTTTTCTCTTTTATGGAAAAATTTGGAAATTTGGTTGAATATTTGAAG
129 GTTTGAATTTCTCAAATTTTTTCTCTTTTATGGAAAAATTTGGAAATTTGGTTGAATATTTGAAG
* * * *
9503146 -ATTCTATTTGAACTTCTTGACCAAAGTTGAAGTTTTCGGTCAGATCTTGACAAGTTTTCTAGAA
194 TTTTC-AATTGAACTTCATGACCAAAGTTGAAGTTTTCGGTCAAATCTTGACAAGTTTTCTAGAA
9503210 ATTGATGACCAAATCCAGTTTTCGATCTA-CTAGATTTAAAGGGTAAAGAGAGTGGTAGAGAAGA
258 ATTGATGACCAAATCCAGTTTTCG-TC-ACCTAGATTTAAAGGGT-AAGAGAGTGGTAGAGAA-A
* * *
9503274 AGTGTAAAGAGAGGCAATTTTGAGGAAAACAGAAAAAA-TTTGGTTTTTGTACAGGTCTGGAATG
319 AGTGTAGAGAGAGGCAA-TTTGAGGAAAACAGAAAAAATTTTGGTTTTTATACAGGTCTAGAATG
* * *
9503338 ACATAGTTTTAGGAAAAGCTCCTGACCCATTAGACCCGTGTGACTCGCACGCTACCTATTTATGG
383 ACGTAATTTTAGGAAAAGCTCCTGACCCATTAGACCTGTGTGACTCGCACGCTACCTATTTATGG
* * *
9503403 AACCTGACTCGATCACAAGTATTTGTTTTTCTTTTCTCATTCCATTTTTTGTTTTGATTTTTTTT
448 AACCTGACTCGATCGCAAGTATTTGTTTTTCTTTTTTCATTCCATTTTTTGTTTTGA-TTTTTTG
* * * * * *
9503468 ATTTTATTTTAGAATTTTATTTTATTTACTATTATTA-TTATTATTATTATTATTATTATTATTG
512 A-TTTATTTT---ATTTTA---GATTT-TTATT-TTACCTACTACTACTATTATTATTATTATTG
*
9503532 ACTCGATCGTAAGTA-TT-TTTTTCTTTTTTCATTCCATTTTTTGTTTGAATTATTTATTTATTT
568 ACTCGATCGTAAGTATTTGTTTTTCTTTTTTCATTCCATTTTTTGTTT---TGATTTATTTATTT
*
9503595 TATTTTAGATTTTTATTTTACTTAC---TACTACTATTACTACTTCTATGACTATTATATTATTA
630 TATTTTAGATTTTTATTTTACTTACTATTACTACTATTACTAATTCTATGACTATTATATTATTA
*
9503657 TTATTATTATT-TTATTGCT-TT-TT-TTATT-TT-TTA-TTT-A-T-TTT
695 TTATTATTATTATTATTACTATTATTATTATTATTATTATTTTGATTATTT
* *
9503698 ATTGAAAAAAAGATGATAAAATAGACATGCTTGGTTATGAGTTTTTTTTTAGCTTTTTAGGTTAA
1 ATTGAAAAAAAGGTGATAAAATAGACA-GCTTGGTTATGAG---TTTTTTAGGTTTTTAGGTTAA
* * *
9503763 TACTGGAAGTCTTGGTTTTGGTAATTAGTCTGTGATTTTGGTTTTTTTTTCTTTTTTTTATCTTG
62 TACTGGAAGTCTTGGTTTTGGTAATTAGTCCGTGATTCTGG--------T-TTTTTTTTATCATG
** *
9503828 GATTG-AAGTGGTTTGAATTTCTTGAATTTTTTTTCTTTTATGGAAAAATTTGGAAATTTGGTTG
118 GATTGAAAGTGGTTTGAATTTCTCAAATTTTTTCTCTTTTATGGAAAAATTTGGAAATTTGGTTG
* * *
9503892 AATATTTGAAGTTTTCAACTGAACTTCGTGACCAAAGTTGAAGTTTTTGGTCAAATCTTGACAAG
183 AATATTTGAAGTTTTCAATTGAACTTCATGACCAAAGTTGAAGTTTTCGGTCAAATCTTGACAAG
* *
9503957 TTTTCTAGAAATCGATGACCAAATCCAGTTTTTGTCACCTAGATTTAAAGGGTAGAGAGAGTGGT
248 TTTTCTAGAAATTGATGACCAAATCCAGTTTTCGTCACCTAGATTTAAAGGGTA-AGAGAGTGGT
* * *
9504022 AGAGCAAAAGTGTCGAGAGAGGCAATTCCGAGGAAAACAGAAAAAATTTTGGTTTTTACACAGGT
312 AGAG-AAAAGTGTAGAGAGAGGCAATT-TGAGGAAAACAGAAAAAATTTTGGTTTTTATACAGGT
* * * *
9504087 CTAGAATGATGTAATTTTAGGAAAAGCTCTTGACCCATTAGACCTGTATGACTCGCACGTTACCT
375 CTAGAATGACGTAATTTTAGGAAAAGCTCCTGACCCATTAGACCTGTGTGACTCGCACGCTACCT
* *
9504152 ATTTATGAAACCTGACTCGATCGCAAGTATTTGTTTTTCTTTTTTCATTGCATTTTTTGTTTTGA
440 ATTTATGGAACCTGACTCGATCGCAAGTATTTGTTTTTCTTTTTTCATTCCATTTTTTGTTTTGA
* *
9504217 TTTTTTGATTTATTTTATTTTAGATTTTTATTTTACGTACTACTACTATTATTATTATTATTGAA
505 TTTTTTGATTTATTTTATTTTAGATTTTTATTTTACCTACTACTACTATTATTATTATTATTGAC
*
9504282 TCAATCGTAAGTATTTGTTTTTCTTTTTTCATTCCATTTTTTGTTTTGATTTATTTATTTTATTT
570 TCGATCGTAAGTATTTGTTTTTCTTTTTTCATTCCATTTTTTGTTTTGATTTATTTATTTTATTT
* * *
9504347 TAGATTTTTATTTTACTTACTATTACTACTACTACTACTATTATTATTATTATTATTATTATTAT
635 TAGATTTTTATTTTACTTACTATTACTACTA-T--TACTA--ATT-CTATGACTATTA-TATTAT
*
9504412 TATTATTATTATTATTATTATTATTATTATTATTATTATTATTTGTTTTGATTTTTTTATTT
693 TATTATTATTATTATTATTACTATTATTATTATTATTATTA----TTTTGA-----TTATTT
* *
9504474 ATTTTATTGAAAAAAGGTGATAAAATAGAGGAGCTTGGTTA-GAAGTTTTTTAGGTTTTTAGGTT
1 A-TTGA---AAAAAAGGTGATAAAATAGA-CAGCTTGGTTATG-AGTTTTTTAGGTTTTTAGGTT
* * * *
9504538 AATATTGGAAGTCTTGGTTTTGGTAATTAGTCCGTGATTCTAGTTTATTTTAATCATGGATTGAA
60 AATACTGGAAGTCTTGGTTTTGGTAATTAGTCCGTGATTCTGGTTTTTTTTTATCATGGATTGAA
* *
9504603 AATGGTTTGAATTTCTCAAATTGTTTCTCTTTTATGGAAAAATTTGGAAATTTGGTTG-ATATTT
125 AGTGGTTTGAATTTCTCAAATTTTTTCTCTTTTATGGAAAAATTTGGAAATTTGGTTGAATATTT
* * * *
9504667 GAAGTTTCCAGTTGAACTTTATGACCAAAGTTGAAGTTTTCGATCAAATCTTGACAAGTTTTCTA
190 GAAGTTTTCAATTGAACTTCATGACCAAAGTTGAAGTTTTCGGTCAAATCTTGACAAGTTTTCTA
* * *
9504732 GAAATTGATGACTAAATCTAGTTTTCGGTCACCTAGATTTAAA---T----G-GTAG-AGA-AAA
255 GAAATTGATGACCAAATCCAGTTTTC-GTCACCTAGATTTAAAGGGTAAGAGAGTGGTAGAGAAA
* *
9504787 AGTATAGAGAGAGGCAACTTTGAGGAAAACAGAAAAAATTTTGGTTTTTATACAGGTTTAGAATG
319 AGTGTAGAGAGAGGCAA-TTTGAGGAAAACAGAAAAAATTTTGGTTTTTATACAGGTCTAGAATG
* * *
9504852 ACGT-AGTTTAGGGAAAAGCTCCTGACCCATTAGACCTGTGTAAC-CTGCACGCTACCTGTTTAT
383 ACGTAATTTTA-GGAAAAGCTCCTGACCCATTAGACCTGTGTGACTC-GCACGCTACCTATTTAT
* * *
9504915 GGAACCTGACTGGATCGCAAGTATTTGTTTTTCTTTTTTCATTTCATTTTTTGTTTTGA-ATTTT
446 GGAACCTGACTCGATCGCAAGTATTTGTTTTTCTTTTTTCATTCCATTTTTTGTTTTGATTTTTT
9504979 GATTTATTTTATTTTAGATTTTTATTTTACTTACTACTACTACTATTATTATTATTATTGACTCG
511 GATTTATTTTATTTTAGATTTTTATTTTAC---CTACTACTACTATTATTATTATTATTGACTCG
*
9505044 ATCGTAAGTATTTGTTTTTCTTTTTTCATTCCATTTTTTGATTTGATTTATTTATTTATTTATTT
573 ATCGTAAGTATTTGTTTTTCTTTTTTCATTCCATTTTTTGTTTTGATTTATTTA--T-TTTATTT
* * *
9505109 TAAATTTTTATTTTACTTACTATTATTATTATTA
635 TAGATTTTTATTTTACTTACTATTACTACTATTA
9505143 TTATTTGTTT
Statistics
Matches: 1272, Mismatches: 104, Indels: 125
0.85 0.07 0.08
Matches are distributed among these distances:
745 2 0.00
746 35 0.03
747 41 0.03
748 98 0.08
749 6 0.00
750 37 0.03
751 1 0.00
752 6 0.00
753 5 0.00
755 14 0.01
756 120 0.09
757 461 0.36
758 29 0.02
759 89 0.07
760 5 0.00
761 8 0.01
762 37 0.03
763 3 0.00
766 1 0.00
768 105 0.08
769 72 0.06
775 1 0.00
776 4 0.00
777 60 0.05
779 1 0.00
780 30 0.02
781 1 0.00
ACGTcount: A:0.28, C:0.10, G:0.16, T:0.46
Consensus pattern (745 bp):
ATTGAAAAAAAGGTGATAAAATAGACAGCTTGGTTATGAGTTTTTTAGGTTTTTAGGTTAATACT
GGAAGTCTTGGTTTTGGTAATTAGTCCGTGATTCTGGTTTTTTTTTATCATGGATTGAAAGTGGT
TTGAATTTCTCAAATTTTTTCTCTTTTATGGAAAAATTTGGAAATTTGGTTGAATATTTGAAGTT
TTCAATTGAACTTCATGACCAAAGTTGAAGTTTTCGGTCAAATCTTGACAAGTTTTCTAGAAATT
GATGACCAAATCCAGTTTTCGTCACCTAGATTTAAAGGGTAAGAGAGTGGTAGAGAAAAGTGTAG
AGAGAGGCAATTTGAGGAAAACAGAAAAAATTTTGGTTTTTATACAGGTCTAGAATGACGTAATT
TTAGGAAAAGCTCCTGACCCATTAGACCTGTGTGACTCGCACGCTACCTATTTATGGAACCTGAC
TCGATCGCAAGTATTTGTTTTTCTTTTTTCATTCCATTTTTTGTTTTGATTTTTTGATTTATTTT
ATTTTAGATTTTTATTTTACCTACTACTACTATTATTATTATTATTGACTCGATCGTAAGTATTT
GTTTTTCTTTTTTCATTCCATTTTTTGTTTTGATTTATTTATTTTATTTTAGATTTTTATTTTAC
TTACTATTACTACTATTACTAATTCTATGACTATTATATTATTATTATTATTATTATTATTACTA
TTATTATTATTATTATTATTTTGATTATTT
Found at i:9505083 original size:116 final size:116
Alignment explanation
Indices: 9504921--9505147 Score: 348
Period size: 116 Copynumber: 2.0 Consensus size: 116
9504911 TTATGGAACC
* * *
9504921 TGACTGGATCGCAAGTATTTGTTTTTCTTTTTTCATTTCATTTTTTGTTTTGAATT-TTGATTTA
1 TGACTCGATCGCAAGTATTTGTTTTTCTTTTTTCATTCCATTTTTTGATTTGAATTATTGATTTA
*
9504985 TTTTATTTTAGATTTTTATTTTACTTACTACTACTACTATTATTATTATTAT
66 -TTTATTTTAAATTTTTATTTTACTTACTACTACTACTATTATTATTATTAT
* * *
9505037 TGACTCGATCGTAAGTATTTGTTTTTCTTTTTTCATTCCATTTTTTGATTTGATTTATTTATTTA
1 TGACTCGATCGCAAGTATTTGTTTTTCTTTTTTCATTCCATTTTTTGATTTGAATTATTGATTTA
* * *
9505102 TTTATTTTAAATTTTTATTTTACTTACTATTATTATTATTATTATT
66 TTTATTTTAAATTTTTATTTTACTTACTACTACTACTATTATTATT
9505148 TGTTTTGATT
Statistics
Matches: 100, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
116 93 0.93
117 7 0.07
ACGTcount: A:0.22, C:0.09, G:0.07, T:0.62
Consensus pattern (116 bp):
TGACTCGATCGCAAGTATTTGTTTTTCTTTTTTCATTCCATTTTTTGATTTGAATTATTGATTTA
TTTATTTTAAATTTTTATTTTACTTACTACTACTACTATTATTATTATTAT
Found at i:9505110 original size:9 final size:9
Alignment explanation
Indices: 9505090--9505174 Score: 50
Period size: 9 Copynumber: 8.7 Consensus size: 9
9505080 TTTGATTTGA
9505090 TTTATTTA-
1 TTTATTTAT
9505098 TTTATTTAT
1 TTTATTTAT
9505107 TTTAAATTTTTAT
1 TTT--A--TTTAT
9505120 TTTACTTACTAT
1 TTTA-TT--TAT
9505132 TATTA-TTAT
1 T-TTATTTAT
*
9505141 TATTATTTGT
1 T-TTATTTAT
9505151 TTTGATTT-T
1 TTT-ATTTAT
9505160 TTTATTTAT
1 TTTATTTAT
9505169 TTTATT
1 TTTATT
9505175 GAAAAAAGGT
Statistics
Matches: 64, Mismatches: 2, Indels: 21
0.74 0.02 0.24
Matches are distributed among these distances:
8 12 0.19
9 24 0.38
10 10 0.16
11 3 0.05
12 4 0.06
13 11 0.17
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.72
Consensus pattern (9 bp):
TTTATTTAT
Found at i:9505830 original size:3 final size:3
Alignment explanation
Indices: 9505822--9505853 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
9505812 TTATTTTACT
9505822 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
9505854 TTATTATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (3 bp):
TAC
Found at i:9506574 original size:3 final size:3
Alignment explanation
Indices: 9506560--9506591 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
9506550 TTATTTTACT
*
9506560 TAC TAT TAC TAC TAC TAC TAC TAC TAC TAC TA
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
9506592 TTATTATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.34, C:0.28, G:0.00, T:0.38
Consensus pattern (3 bp):
TAC
Found at i:9507333 original size:121 final size:120
Alignment explanation
Indices: 9507110--9507335 Score: 307
Period size: 121 Copynumber: 1.9 Consensus size: 120
9507100 CTCGATCACC
*
9507110 AAGTATTTGTTTTTCTTTTTTTCAATTCCATTTTTTGTTTTGATTTTTTGTTATTTTATTTTAGA
1 AAGTATTTGTTTTTC-TTTTTTCAATTCCATTTTTTGTTATGATTTTTTGTTATTTTATTTTAGA
* * * *
9507175 TTTTTAGTTTACTTACTACTATTATTATTATATTATTATTATTGACTCGATTTTGT
65 TTTTTAGTTTACTTACTACTACTACTACTATACTATTATTATTGACTCGATTTTGT
9507231 AAGTATTTGTTTTTC-TTTTTC-ATTCCATTTTTTTGTTATGATTATTTAAT-TTATTTTATTTT
1 AAGTATTTGTTTTTCTTTTTTCAATTCCA-TTTTTTGTTATGATT-TTT--TGTTATTTTATTTT
* *
9507293 AGA-TTTTATTTTACTTACTATTACTACTACTACTACTATTATT
62 AGATTTTTAGTTTACTTACTACTACTACTACTA-TACTATTATT
9507336 TTTTTTTTAT
Statistics
Matches: 93, Mismatches: 7, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
118 6 0.06
119 20 0.22
120 27 0.29
121 39 0.42
122 1 0.01
ACGTcount: A:0.22, C:0.09, G:0.07, T:0.62
Consensus pattern (120 bp):
AAGTATTTGTTTTTCTTTTTTCAATTCCATTTTTTGTTATGATTTTTTGTTATTTTATTTTAGAT
TTTTAGTTTACTTACTACTACTACTACTATACTATTATTATTGACTCGATTTTGT
Found at i:9508000 original size:114 final size:114
Alignment explanation
Indices: 9507800--9508008 Score: 393
Period size: 114 Copynumber: 1.8 Consensus size: 114
9507790 TTATGGAACC
9507800 TGACTCGATCGCAAGTATTTGTTTTTCTTTTTTCATTCCATTTTTTGTTTTGATTTTTTGATTTA
1 TGACTCGATCGCAAGTATTTGTTTTTCTTTTTTCATTCCATTTTTTGTTTTGATTTTTTGATTTA
9507865 TTTTATTTTAGATTTTTATTTTACTTACTACTATTATTATTATTATTAT
66 TTTTATTTTAGATTTTTATTTTACTTACTACTATTATTATTATTATTAT
*
9507914 TGACTCGATCGTAAGTATTTGTTTTTCTTTTTTCATTCCATTTTTTGTTTTGATTTATTT-ATTT
1 TGACTCGATCGCAAGTATTTGTTTTTCTTTTTTCATTCCATTTTTTGTTTTGATTT-TTTGATTT
9507978 ATTTTATTTTAGATTTTTATTTTACTTACTA
65 ATTTTATTTTAGATTTTTATTTTACTTACTA
9508009 TTACTACTAC
Statistics
Matches: 93, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
114 90 0.97
115 3 0.03
ACGTcount: A:0.20, C:0.10, G:0.08, T:0.63
Consensus pattern (114 bp):
TGACTCGATCGCAAGTATTTGTTTTTCTTTTTTCATTCCATTTTTTGTTTTGATTTTTTGATTTA
TTTTATTTTAGATTTTTATTTTACTTACTACTATTATTATTATTATTAT
Found at i:9509368 original size:107 final size:107
Alignment explanation
Indices: 9509177--9509389 Score: 356
Period size: 107 Copynumber: 2.0 Consensus size: 107
9509167 ATGGAACCTG
9509177 ACTCGATCGCAAGTATTTGTTTTCCTTTTTTCATTCCATTTTTTGTTTTGATTTTTTGATTTATT
1 ACTCGATCGCAAGTATTTGTTTTCCTTTTTTCATTCCATTTTTTGTTTTGATTTTTTGATTTATT
*
9509242 TTATTTTAGATTTTTATTTTACTCACTATTATTATTATTATTA
66 TTATTTTAGATTTTTATTTTACTCACTACTATTATT-TTATTA
* * * *
9509285 ACTCGATTGCAAGTATTTGTTTTTCTTTTTTCATTCCATTTTTT-TTTTGGTTTTTTTATTTATT
1 ACTCGATCGCAAGTATTTGTTTTCCTTTTTTCATTCCATTTTTTGTTTTGATTTTTTGATTTATT
*
9509349 TTATTTTAGATTTTTATTTTACTTACTACTATTATTTTATT
66 TTATTTTAGATTTTTATTTTACTCACTACTATTATTTTATT
9509390 TATTTATTCA
Statistics
Matches: 99, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
106 5 0.05
107 52 0.53
108 42 0.42
ACGTcount: A:0.19, C:0.10, G:0.07, T:0.63
Consensus pattern (107 bp):
ACTCGATCGCAAGTATTTGTTTTCCTTTTTTCATTCCATTTTTTGTTTTGATTTTTTGATTTATT
TTATTTTAGATTTTTATTTTACTCACTACTATTATTTTATTA
Found at i:9515890 original size:7 final size:7
Alignment explanation
Indices: 9515878--9515919 Score: 57
Period size: 7 Copynumber: 5.6 Consensus size: 7
9515868 CAGGTATTTG
9515878 TTTTTCT
1 TTTTTCT
9515885 TTTTTCATTT
1 TTTTTC---T
9515895 TTTTTCT
1 TTTTTCT
9515902 TTTTTCT
1 TTTTTCT
9515909 TTTTTCT
1 TTTTTCT
9515916 TTTT
1 TTTT
9515920 ATTTTATTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
7 25 0.78
10 7 0.22
ACGTcount: A:0.02, C:0.12, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTCT
Found at i:9515900 original size:17 final size:17
Alignment explanation
Indices: 9515873--9515913 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
9515863 AATTGCAGGT
9515873 ATTTGTTTTTCTTTTTTC
1 ATTT-TTTTTCTTTTTTC
9515891 ATTTTTTTTCTTTTTTC
1 ATTTTTTTTCTTTTTTC
9515908 -TTTTTT
1 ATTTTTT
9515914 CTTTTTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 6 0.26
17 13 0.57
18 4 0.17
ACGTcount: A:0.05, C:0.10, G:0.02, T:0.83
Consensus pattern (17 bp):
ATTTTTTTTCTTTTTTC
Found at i:9515909 original size:24 final size:25
Alignment explanation
Indices: 9515878--9515929 Score: 79
Period size: 24 Copynumber: 2.1 Consensus size: 25
9515868 CAGGTATTTG
*
9515878 TTTTTCTTTTTTCATTTT-TTTTCT
1 TTTTTCTTTTTTCATTTTATTTTAT
*
9515902 TTTTTCTTTTTTCTTTTTATTTTAT
1 TTTTTCTTTTTTCATTTTATTTTAT
9515927 TTT
1 TTT
9515930 AGATTTTAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 17 0.68
25 8 0.32
ACGTcount: A:0.06, C:0.10, G:0.00, T:0.85
Consensus pattern (25 bp):
TTTTTCTTTTTTCATTTTATTTTAT
Found at i:9515954 original size:3 final size:3
Alignment explanation
Indices: 9515946--9516012 Score: 50
Period size: 3 Copynumber: 22.7 Consensus size: 3
9515936 TAGATTTTAC
* * * * *
9515946 TTA TTA TTA TTA TTA TTA TTA TTA CTA CTA CTA CTA CTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
9515993 TT- TTA TCT- TTAA TTA TTA TT
1 TTA TTA T-TA TT-A TTA TTA TT
9516013 TTACTCATTA
Statistics
Matches: 58, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
2 5 0.09
3 50 0.86
4 3 0.05
ACGTcount: A:0.30, C:0.09, G:0.00, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:9516180 original size:16 final size:17
Alignment explanation
Indices: 9516152--9516183 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
9516142 AACTATTAGA
9516152 AAATTTTTCATGAATTT
1 AAATTTTTCATGAATTT
9516169 AAATTTTT-ATGAATT
1 AAATTTTTCATGAATT
9516184 CTACCAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.38, C:0.03, G:0.06, T:0.53
Consensus pattern (17 bp):
AAATTTTTCATGAATTT
Found at i:9516837 original size:3 final size:3
Alignment explanation
Indices: 9516829--9516858 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
9516819 CATTATAACA
9516829 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
9516859 TTCTAATCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:9517564 original size:21 final size:21
Alignment explanation
Indices: 9517538--9517579 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
9517528 GAGTAAATGG
*
9517538 ATAGATAATTGTGTTTACATT
1 ATAGATAATTGTGTTCACATT
*
9517559 ATAGATTATTGTGTTCACATT
1 ATAGATAATTGTGTTCACATT
9517580 TAATTTCCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.31, C:0.07, G:0.14, T:0.48
Consensus pattern (21 bp):
ATAGATAATTGTGTTCACATT
Found at i:9522630 original size:20 final size:21
Alignment explanation
Indices: 9522591--9522630 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
9522581 TGGGTAGATA
*
9522591 ATTGTGTTTAAACTATAAATT
1 ATTGTGTTCAAACTATAAATT
*
9522612 ATTGTGTTCACAC-ATAAAT
1 ATTGTGTTCAAACTATAAAT
9522631 CCCATAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.42
Consensus pattern (21 bp):
ATTGTGTTCAAACTATAAATT
Found at i:9523232 original size:22 final size:23
Alignment explanation
Indices: 9523199--9523243 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
9523189 ACCTTTCGAT
9523199 CTTCTCTTTTTTT-TTACTGTTG
1 CTTCTCTTTTTTTATTACTGTTG
9523221 CTTCT-TTGTTTTTCATTACTGTT
1 CTTCTCTT-TTTTT-ATTACTGTT
9523244 CTTTTATCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 2 0.10
22 10 0.50
24 8 0.40
ACGTcount: A:0.07, C:0.18, G:0.09, T:0.67
Consensus pattern (23 bp):
CTTCTCTTTTTTTATTACTGTTG
Found at i:9524211 original size:8 final size:8
Alignment explanation
Indices: 9524198--9524223 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
9524188 ATGGCCAAGC
9524198 TTTTATAT
1 TTTTATAT
9524206 TTTTATAT
1 TTTTATAT
9524214 TTTTATAT
1 TTTTATAT
9524222 TT
1 TT
9524224 ATTTGGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTATAT
Found at i:9524268 original size:17 final size:16
Alignment explanation
Indices: 9524246--9524284 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
9524236 AACTTGATGA
9524246 TTTTTATAATT-TTTAT
1 TTTTTA-AATTATTTAT
9524262 TTATTTAAATTATTTAT
1 TT-TTTAAATTATTTAT
9524279 TTTTTA
1 TTTTTA
9524285 CTTTTATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 10 0.48
17 11 0.52
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTTTAAATTATTTAT
Found at i:9525607 original size:22 final size:24
Alignment explanation
Indices: 9525563--9525608 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 24
9525553 AAAACGTAAT
*
9525563 TTTTGTTAAAAATATGAAAAAATA
1 TTTTGTTAAAAATATCAAAAAATA
*
9525587 TTTT-TTAAAAAT-TCAATAAATA
1 TTTTGTTAAAAATATCAAAAAATA
9525609 CTATATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 8 0.40
23 8 0.40
24 4 0.20
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.41
Consensus pattern (24 bp):
TTTTGTTAAAAATATCAAAAAATA
Found at i:9525696 original size:113 final size:113
Alignment explanation
Indices: 9525424--9525697 Score: 313
Period size: 112 Copynumber: 2.4 Consensus size: 113
9525414 TTCAACAAAG
* * * * *
9525424 ACAA-TTTTTAAGATAGAAAATGCAATATTTGTTAAAAACATGAAAAAATATTTTTTTCAAAATT
1 ACAACTTTTTAAAATAAAAAATGCAATTTTTGTTAAAAATATGAAAAAATATTTTTTTAAAAATT
9525488 CAATAAAAACGACATTTGTAAGATAAAAACGTAGTCTTTATTGAAAAA
66 CAATAAAAACGACATTTGTAAGATAAAAACGTAGTCTTTATTGAAAAA
** * * *
9525536 ATGACATTTTTAAAA-CAAAAACGTAATTTTTGTTAAAAATATGAAAAAATA-TTTTTTAAAAAT
1 ACAAC-TTTTTAAAATAAAAAATGCAATTTTTGTTAAAAATATGAAAAAATATTTTTTTAAAAAT
* * * * * * *
9525599 TCAATAAATACTATATTTTTGAGATAAAAATGTTA-TTTTTATTGAAAAA
65 TCAATAAAAACGACATTTGTAAGATAAAAACG-TAGTCTTTATTGAAAAA
* * *
9525648 ACAACTTTTCTAAAATAAAAAATGCAGTTTTTATTGAAAATATGAAAAAA
1 ACAACTTTT-TAAAATAAAAAATGCAATTTTTGTTAAAAATATGAAAAAA
9525698 AAATAAAACA
Statistics
Matches: 132, Mismatches: 25, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
111 4 0.03
112 60 0.45
113 60 0.45
114 8 0.06
ACGTcount: A:0.49, C:0.07, G:0.08, T:0.36
Consensus pattern (113 bp):
ACAACTTTTTAAAATAAAAAATGCAATTTTTGTTAAAAATATGAAAAAATATTTTTTTAAAAATT
CAATAAAAACGACATTTGTAAGATAAAAACGTAGTCTTTATTGAAAAA
Found at i:9526136 original size:31 final size:31
Alignment explanation
Indices: 9526049--9526138 Score: 101
Period size: 30 Copynumber: 2.9 Consensus size: 31
9526039 TTTTATAAAA
*
9526049 TGTAATATAATGTATTTGTTATTTTTTTTTGT
1 TGTAATA-AATGTATTTGTTATATTTTTTTGT
* * ** * *
9526081 TATATTTCATATATTTTTTA-ATTTTTTTGT
1 TGTAATAAATGTATTTGTTATATTTTTTTGT
9526111 TGTAATAAATGTATTTGTTATATTTTTT
1 TGTAATAAATGTATTTGTTATATTTTTT
9526139 GTTTTTAATA
Statistics
Matches: 44, Mismatches: 13, Indels: 3
0.73 0.22 0.05
Matches are distributed among these distances:
30 23 0.52
31 17 0.39
32 4 0.09
ACGTcount: A:0.24, C:0.01, G:0.09, T:0.66
Consensus pattern (31 bp):
TGTAATAAATGTATTTGTTATATTTTTTTGT
Found at i:9526148 original size:31 final size:30
Alignment explanation
Indices: 9526051--9526148 Score: 83
Period size: 31 Copynumber: 3.2 Consensus size: 30
9526041 TTATAAAATG
9526051 TAATATAATGTATTTGTTAT-TTTTTTTTGTT
1 TAATA-AATGTATTTGTTATATTTTTTTT-TT
* ** * * *
9526082 ATATTTCATATATTTTTTA-ATTTTTTTGTTG
1 -TAATAAATGTATTTGTTATATTTTTTT-TTT
9526113 TAATAAATGTATTTGTTATATTTTTTGTTTT
1 TAATAAATGTATTTGTTATATTTTTT-TTTT
9526144 TAATA
1 TAATA
9526149 GAGATAGTTT
Statistics
Matches: 50, Mismatches: 12, Indels: 9
0.70 0.17 0.13
Matches are distributed among these distances:
30 13 0.26
31 32 0.64
32 5 0.10
ACGTcount: A:0.26, C:0.01, G:0.08, T:0.65
Consensus pattern (30 bp):
TAATAAATGTATTTGTTATATTTTTTTTTT
Found at i:9526362 original size:20 final size:21
Alignment explanation
Indices: 9526323--9526369 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
9526313 TTCTTTTCTC
9526323 AAAT-ATATTTTATAAAAAAAT
1 AAATAATA-TTTATAAAAAAAT
9526344 AAATAATATTTAT-AAAAAAT
1 AAATAATATTTATAAAAAAAT
9526364 AAATAA
1 AAATAA
9526370 AGGAATATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 13 0.52
21 9 0.36
22 3 0.12
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (21 bp):
AAATAATATTTATAAAAAAAT
Found at i:9526760 original size:14 final size:14
Alignment explanation
Indices: 9526741--9526770 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
9526731 ATTTTTTCTT
9526741 TTTTATAAAACATA
1 TTTTATAAAACATA
*
9526755 TTTTATAAAATATA
1 TTTTATAAAACATA
9526769 TT
1 TT
9526771 AAATGAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (14 bp):
TTTTATAAAACATA
Found at i:9527440 original size:22 final size:23
Alignment explanation
Indices: 9527398--9527446 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
9527388 AATATAATAA
*
9527398 TTAAAAATGTAAAAATATATTTG
1 TTAAAAATATAAAAATATATTTG
*
9527421 TTAAAAATATAAAAAT-TATTTT
1 TTAAAAATATAAAAATATATTTG
9527443 TTAA
1 TTAA
9527447 TTATTTGATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 9 0.38
23 15 0.62
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (23 bp):
TTAAAAATATAAAAATATATTTG
Found at i:9533261 original size:15 final size:15
Alignment explanation
Indices: 9533241--9533273 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
9533231 GACAGTTCAT
*
9533241 CCTGTTATACAGAGG
1 CCTGTTATAAAGAGG
9533256 CCTGTTATAAAGAGG
1 CCTGTTATAAAGAGG
9533271 CCT
1 CCT
9533274 TTTGTCAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (15 bp):
CCTGTTATAAAGAGG
Found at i:9542790 original size:35 final size:35
Alignment explanation
Indices: 9542736--9542807 Score: 90
Period size: 35 Copynumber: 2.1 Consensus size: 35
9542726 ATTATATATG
* * * *
9542736 TGAAGTCAGTTATAGGTTTATGTCCAGAAAGCATT
1 TGAAGTCAGTTATAAGTTTATGCCCAAAAAACATT
* *
9542771 TGAAGTCATTTGTAAGTTTATGCCCAAAAAACATT
1 TGAAGTCAGTTATAAGTTTATGCCCAAAAAACATT
9542806 TG
1 TG
9542808 GTTTATATAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.35
Consensus pattern (35 bp):
TGAAGTCAGTTATAAGTTTATGCCCAAAAAACATT
Found at i:9546453 original size:14 final size:15
Alignment explanation
Indices: 9546434--9546463 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
9546424 AGATTATTTA
9546434 ACAAAAA-AAAAAGG
1 ACAAAAAGAAAAAGG
9546448 ACAAAAAGAAAAAGG
1 ACAAAAAGAAAAAGG
9546463 A
1 A
9546464 ATGATGATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.77, C:0.07, G:0.17, T:0.00
Consensus pattern (15 bp):
ACAAAAAGAAAAAGG
Found at i:9546698 original size:59 final size:59
Alignment explanation
Indices: 9546527--9546798 Score: 345
Period size: 58 Copynumber: 4.6 Consensus size: 59
9546517 TGCTTTTGTA
* * * * *
9546527 CAAGGAAAATTGATGCCTTAAACTTTTCCTTAAAAATGTTTTTCTTGATAATTTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTT-TTGAAAATTTTATTTT
* * * * *
9546587 TAA-AGAAAATTGGTAC-TTCAAACTTTTCCTCAAAAAT-ATTTTTTGGAAATTTTATTTT
1 CAAGA-AAAATTGATACTTTC-AACTTTTCCTTAAAAATGTTTTTTTGAAAATTTTATTTT
* *
9546645 TAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAACGTTTTTTTGAAAATTTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTTTGAAAATTTTATTTT
* * *
9546704 CAAGGAAAATTGATACTTTCAACTTTTGCTCAAAAATG-TTTTTTGAAAATTTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTTTGAAAATTTTATTTT
*
9546762 CAAAAAAAATTGATACTTTCAACTTTTCCTTAAAAAT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAAT
9546799 ATATATTTTT
Statistics
Matches: 184, Mismatches: 23, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
58 95 0.52
59 62 0.34
60 27 0.15
ACGTcount: A:0.36, C:0.11, G:0.08, T:0.44
Consensus pattern (59 bp):
CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTTTGAAAATTTTATTTT
Found at i:9546730 original size:117 final size:118
Alignment explanation
Indices: 9546532--9546797 Score: 392
Period size: 117 Copynumber: 2.3 Consensus size: 118
9546522 TTGTACAAGG
* * * * * *
9546532 AAAATTGATGCCTTAAACTTTTCCTTAAAAATGTTTTTCTTGATAATTTTATTTTTAAAGAAAAT
1 AAAATTGATACTTTCAACTTTTCCTTAAAAACGTTTTTCTTGAAAATTTTATTTTCAAAGAAAAT
* * * *
9546597 TGGTACTTCAAACTTTTCCTCAAAAATATTTTTTGGAAATTTTATTTTTAAGA
66 TGATACTTCAAACTTTTCCTCAAAAATATTTTTTGAAAATTTTATTTTCAAAA
*
9546650 AAAATTGATACTTTCAACTTTTCCTTAAAAACGTTTTT-TTGAAAATTTTATTTTCAAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCCTTAAAAACGTTTTTCTTGAAAATTTTATTTTCAAAGAAAAT
* *
9546714 TGATACTTTC-AACTTTTGCTCAAAAATGTTTTTTGAAAATTTTATTTTCAAAA
66 TGATAC-TTCAAACTTTTCCTCAAAAATATTTTTTGAAAATTTTATTTTCAAAA
9546767 AAAATTGATACTTTCAACTTTTCCTTAAAAA
1 AAAATTGATACTTTCAACTTTTCCTTAAAAA
9546798 TATATATTTT
Statistics
Matches: 134, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
117 97 0.72
118 37 0.28
ACGTcount: A:0.36, C:0.11, G:0.08, T:0.45
Consensus pattern (118 bp):
AAAATTGATACTTTCAACTTTTCCTTAAAAACGTTTTTCTTGAAAATTTTATTTTCAAAGAAAAT
TGATACTTCAAACTTTTCCTCAAAAATATTTTTTGAAAATTTTATTTTCAAAA
Found at i:9548214 original size:23 final size:22
Alignment explanation
Indices: 9548179--9548238 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 22
9548169 GATAGACTAT
9548179 AAAAT-AAAAAAATGCT-AAATA
1 AAAATAAAAAAAAT-CTGAAATA
9548200 CAAAATAAAAAAAATCTGAAATA
1 -AAAATAAAAAAAATCTGAAATA
*
9548223 AAAATGAATAAAAATC
1 AAAAT-AAAAAAAATC
9548239 CCTACAATCG
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
22 12 0.35
23 22 0.65
ACGTcount: A:0.70, C:0.07, G:0.05, T:0.18
Consensus pattern (22 bp):
AAAATAAAAAAAATCTGAAATA
Found at i:9549082 original size:20 final size:20
Alignment explanation
Indices: 9549035--9549169 Score: 82
Period size: 21 Copynumber: 6.8 Consensus size: 20
9549025 GTTTCACATC
* *
9549035 TCAAAGGTTTTCATTTGAAAT
1 TCAAAGATTCTCATTTG-AAT
9549056 TCAAAGATTCTCATTTGAAT
1 TCAAAGATTCTCATTTGAAT
* * *
9549076 TCGAAGATTCACATTCG-A-
1 TCAAAGATTCTCATTTGAAT
* ** *
9549094 -C-AA-ATTTTGGGTTTGACACC
1 TCAAAGATTCT-CATTTGA-A-T
9549114 TCAAAGATTCTCATTTGAAAT
1 TCAAAGATTCTCATTTG-AAT
*
9549135 TCAAAGATTCTCATTTGAGT
1 TCAAAGATTCTCATTTGAAT
* *
9549155 TCGAAGATTCACATT
1 TCAAAGATTCTCATT
9549170 CAAGAAATTT
Statistics
Matches: 88, Mismatches: 17, Indels: 19
0.71 0.14 0.15
Matches are distributed among these distances:
15 3 0.03
16 5 0.06
17 1 0.01
18 1 0.01
19 1 0.01
20 32 0.36
21 33 0.38
22 7 0.08
23 5 0.06
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (20 bp):
TCAAAGATTCTCATTTGAAT
Found at i:9549119 original size:79 final size:79
Alignment explanation
Indices: 9549013--9549559 Score: 756
Period size: 79 Copynumber: 6.9 Consensus size: 79
9549003 TTCATACCCA
* * * * *
9549013 ACAAACTTTAGGGTTTCACATCTCAAAGGTTTTCATTTGAAATTCAAAGATTCTCATTTGAATTC
1 ACAAA-TTTTGGGTTTCACACCTCAAAGATTCTCACTTGAAATTCAAAGATTCTCATTTGAATTC
9549078 GAAGATTCACATTCG
65 GAAGATTCACATTCG
* * *
9549093 ACAAATTTTGGGTTTGACACCTCAAAGATTCTCATTTGAAATTCAAAGATTCTCATTTGAGTTCG
1 ACAAATTTTGGGTTTCACACCTCAAAGATTCTCACTTGAAATTCAAAGATTCTCATTTGAATTCG
*
9549158 AAGATTCACATTCA
66 AAGATTCACATTCG
* * * * * *
9549172 AGAAATTTTGGGTTTCACACCTCAAAGATTCTCACTTGAAATTTAAAAATTCTCATCTGATTTTG
1 ACAAATTTTGGGTTTCACACCTCAAAGATTCTCACTTGAAATTCAAAGATTCTCATTTGAATTCG
*
9549237 AATATTCACATTCG
66 AAGATTCACATTCG
* * ** *
9549251 ATAAATTTTGAGGTTTCATATATCAAAGATTCTCACTTGAAATCCAAAGA-TCTCATTTGAATTC
1 ACAAATTTTG-GGTTTCACACCTCAAAGATTCTCACTTGAAATTCAAAGATTCTCATTTGAATTC
9549315 GAAGATTCACATTCG
65 GAAGATTCACATTCG
* *
9549330 ACAAATTTTGGGTTTCACACCTCAAAGATTCTCACTTGAAATTCAAAGATTCTTATTTGAGTTCG
1 ACAAATTTTGGGTTTCACACCTCAAAGATTCTCACTTGAAATTCAAAGATTCTCATTTGAATTCG
*
9549395 AAGATTCACATTTG
66 AAGATTCACATTCG
* * *
9549409 ACAAATTTTGGGTTTCATACCTTAAATATTCTCACTTGAAATTCAAAGATTCTCATTT-AATTTC
1 ACAAATTTTGGGTTTCACACCTCAAAGATTCTCACTTGAAATTCAAAGATTCTCATTTGAA-TTC
9549473 GAAGATTCACATTCG
65 GAAGATTCACATTCG
* * * *
9549488 ATAAATTTTGGGTTTCACACCTCAAAGATTCTCATTTGAAATTCAAAGATTTTCACTTGAAATTC
1 ACAAATTTTGGGTTTCACACCTCAAAGATTCTCACTTGAAATTCAAAGATTCTCATTTG-AATTC
*
9549553 AAAGATT
65 GAAGATT
9549560 TTTATTTGAG
Statistics
Matches: 412, Mismatches: 50, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
78 36 0.09
79 327 0.79
80 47 0.11
81 2 0.00
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.37
Consensus pattern (79 bp):
ACAAATTTTGGGTTTCACACCTCAAAGATTCTCACTTGAAATTCAAAGATTCTCATTTGAATTCG
AAGATTCACATTCG
Found at i:9549462 original size:21 final size:20
Alignment explanation
Indices: 9549436--9549485 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
9549426 TACCTTAAAT
9549436 ATTCTCACTTGAAATTCAAAG
1 ATTCTCA-TTGAAATTCAAAG
* * *
9549457 ATTCTCATTTAATTTCGAAG
1 ATTCTCATTGAAATTCAAAG
*
9549477 ATTCACATT
1 ATTCTCATT
9549486 CGATAAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 18 0.72
21 7 0.28
ACGTcount: A:0.34, C:0.18, G:0.08, T:0.40
Consensus pattern (20 bp):
ATTCTCATTGAAATTCAAAG
Found at i:9549535 original size:21 final size:21
Alignment explanation
Indices: 9549509--9549585 Score: 84
Period size: 21 Copynumber: 3.7 Consensus size: 21
9549499 GTTTCACACC
9549509 TCAAAGATTCTCATTTGAAAT
1 TCAAAGATTCTCATTTGAAAT
* *
9549530 TCAAAGATTTTCACTTGAAAT
1 TCAAAGATTCTCATTTGAAAT
* * *
9549551 TCAAAGATTTTTATTTG-AGT
1 TCAAAGATTCTCATTTGAAAT
* *
9549571 TCGAAGATTCACATT
1 TCAAAGATTCTCATT
9549586 CGATAAGTTT
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
20 13 0.28
21 34 0.72
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (21 bp):
TCAAAGATTCTCATTTGAAAT
Found at i:9549552 original size:100 final size:100
Alignment explanation
Indices: 9549440--9549745 Score: 425
Period size: 100 Copynumber: 3.0 Consensus size: 100
9549430 TTAAATATTC
*
9549440 TCACTTGAAATTCAAAGATTCTCATTTAATTTCGAAGATTCACATTCGATAAATTTTGGGTTTCA
1 TCACTTGAAATTCAAAGATTCTCATTTAAGTTCGAAGATTCACATTCGATAAATTTTGGGTTTCA
*
9549505 CACCTCAAAGATTCTCATTTGAAATTCAAAGATTT
66 CACCTCAAAGATTCTCACTTGAAATTCAAAGATTT
* * * *
9549540 TCACTTGAAATTCAAAGATTTTTATTTGAGTTCGAAGATTCACATTCGATAAGTTTTGGGTTTCA
1 TCACTTGAAATTCAAAGATTCTCATTTAAGTTCGAAGATTCACATTCGATAAATTTTGGGTTTCA
* *
9549605 TACCTCAAAGATTCTCACTTGAAATTCAAATATTCT
66 CACCTCAAAGATTCTCACTTGAAATTCAAAGATT-T
* * * * * *
9549641 T-ATTTAAAACATCTTAAAGATTCTCATTTAAGTTCAAAGATTCACATTCAATAAATTTCGGGTT
1 TCACTT-GAA-AT-TCAAAGATTCTCATTTAAGTTCGAAGATTCACATTCGATAAATTTTGGGTT
* *
9549705 TCACACCTCAAAGATTCTTAGTTGAAATTCAAAGATTT
63 TCACACCTCAAAGATTCTCACTTGAAATTCAAAGATTT
9549743 TCA
1 TCA
9549746 TCTAAGTTCA
Statistics
Matches: 179, Mismatches: 22, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
100 94 0.53
101 4 0.02
102 4 0.02
103 77 0.43
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.38
Consensus pattern (100 bp):
TCACTTGAAATTCAAAGATTCTCATTTAAGTTCGAAGATTCACATTCGATAAATTTTGGGTTTCA
CACCTCAAAGATTCTCACTTGAAATTCAAAGATTT
Found at i:9549752 original size:79 final size:79
Alignment explanation
Indices: 9549656--9549825 Score: 250
Period size: 79 Copynumber: 2.2 Consensus size: 79
9549646 AAAACATCTT
* * * *
9549656 AAAGATTCTCATTTAAGTTCAAAGATTCACATTCAATAAATTTCGGGTTTCACACCTCAAAGATT
1 AAAGATTCTCATCTAAGTTCAAAAATTCACATTCAATAAATTTCAGGTTTCACACCTCAAAAATT
* *
9549721 CTTAGTTGAAATTC
66 CTCACTTGAAATTC
* ** *
9549735 AAAGATTTTCATCTAAGTTCAAAAATTCACATTCGGTAAATTTTAGGTTTCACACCTCAAAAATT
1 AAAGATTCTCATCTAAGTTCAAAAATTCACATTCAATAAATTTCAGGTTTCACACCTCAAAAATT
9549800 CTCACTTGAAATTC
66 CTCACTTGAAATTC
9549814 AAAGATTCTCAT
1 AAAGATTCTCAT
9549826 TTGAAAATAT
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
79 80 1.00
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.35
Consensus pattern (79 bp):
AAAGATTCTCATCTAAGTTCAAAAATTCACATTCAATAAATTTCAGGTTTCACACCTCAAAAATT
CTCACTTGAAATTC
Found at i:9549816 original size:21 final size:21
Alignment explanation
Indices: 9549791--9549831 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
9549781 GTTTCACACC
9549791 TCAAAAATTCTCACTTGAAAT
1 TCAAAAATTCTCACTTGAAAT
* *
9549812 TCAAAGATTCTCATTTGAAA
1 TCAAAAATTCTCACTTGAAA
9549832 ATATTTTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.34
Consensus pattern (21 bp):
TCAAAAATTCTCACTTGAAAT
Found at i:9549842 original size:25 final size:25
Alignment explanation
Indices: 9549814--9549923 Score: 111
Period size: 25 Copynumber: 4.6 Consensus size: 25
9549804 CTTGAAATTC
*
9549814 AAAGATTCTCATTTGAAAATATTTT
1 AAAGATTCTCATTTGAAAATATCTT
*
9549839 AAAGATTCTCATTTGAAAATGTCTT
1 AAAGATTCTCATTTGAAAATATCTT
* *
9549864 AAAGATTCTCATTT---AAGA-CTC
1 AAAGATTCTCATTTGAAAATATCTT
* * * *
9549885 AAAGATTTTGATTTGAAAATGTTTT
1 AAAGATTCTCATTTGAAAATATCTT
*
9549910 AAAGATTCTTATTT
1 AAAGATTCTCATTT
9549924 AAGACTCAAA
Statistics
Matches: 68, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
21 14 0.21
22 2 0.03
24 2 0.03
25 50 0.74
ACGTcount: A:0.37, C:0.09, G:0.11, T:0.43
Consensus pattern (25 bp):
AAAGATTCTCATTTGAAAATATCTT
Found at i:9549889 original size:46 final size:46
Alignment explanation
Indices: 9549839--9549933 Score: 154
Period size: 46 Copynumber: 2.1 Consensus size: 46
9549829 AAAATATTTT
9549839 AAAGATTCTCATTTGAAAATGTCTTAAAGATTCTCATTTAAGACTC
1 AAAGATTCTCATTTGAAAATGTCTTAAAGATTCTCATTTAAGACTC
* * * *
9549885 AAAGATTTTGATTTGAAAATGTTTTAAAGATTCTTATTTAAGACTC
1 AAAGATTCTCATTTGAAAATGTCTTAAAGATTCTCATTTAAGACTC
9549931 AAA
1 AAA
9549934 ATTTCTTTTG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.39
Consensus pattern (46 bp):
AAAGATTCTCATTTGAAAATGTCTTAAAGATTCTCATTTAAGACTC
Found at i:9550979 original size:20 final size:19
Alignment explanation
Indices: 9550954--9551050 Score: 73
Period size: 18 Copynumber: 5.3 Consensus size: 19
9550944 TTGAGTCTTC
9550954 TTTTTCTCTTCTTTTCATCT
1 TTTTTC-CTTCTTTTCATCT
9550974 TTTTTCCATTC-TTTCATC-
1 TTTTTCC-TTCTTTTCATCT
* *
9550992 -TTTTCCTT-TTTTCTTTT
1 TTTTTCCTTCTTTTCATCT
*
9551009 TTTTTCC-TC-TTTCTTCCT
1 TTTTTCCTTCTTTTCAT-CT
* *
9551027 TTTTTCCTTTTTTTC-TTT
1 TTTTTCCTTCTTTTCATCT
9551045 TTTTTC
1 TTTTTC
9551051 TCATTTTTTT
Statistics
Matches: 64, Mismatches: 5, Indels: 18
0.74 0.06 0.21
Matches are distributed among these distances:
16 7 0.11
17 13 0.20
18 21 0.33
19 10 0.16
20 13 0.20
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTTTCCTTCTTTTCATCT
Found at i:9551003 original size:45 final size:44
Alignment explanation
Indices: 9550954--9551047 Score: 107
Period size: 45 Copynumber: 2.1 Consensus size: 44
9550944 TTGAGTCTTC
*
9550954 TTTTTCTCTTCTTTTCATCTTTTTTCCATTCTTTCATCTTTTCCT
1 TTTTTCTCTTCTTTTCATCTTTCTTCC-TTCTTTCATCTTTTCCT
* * * * * * *
9550999 TTTTTCTTTTTTTTTCCTCTTTCTTCCTTTTTTCCTTTTTTTCT
1 TTTTTCTCTTCTTTTCATCTTTCTTCCTTCTTTCATCTTTTCCT
9551043 TTTTT
1 TTTTT
9551048 TTCTCATTTT
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
44 18 0.44
45 23 0.56
ACGTcount: A:0.03, C:0.23, G:0.00, T:0.73
Consensus pattern (44 bp):
TTTTTCTCTTCTTTTCATCTTTCTTCCTTCTTTCATCTTTTCCT
Found at i:9551013 original size:18 final size:18
Alignment explanation
Indices: 9550992--9551059 Score: 75
Period size: 18 Copynumber: 3.7 Consensus size: 18
9550982 TTCTTTCATC
9550992 TTTTCCTTTTTTCTTTTT
1 TTTTCCTTTTTTCTTTTT
* *
9551010 TTTTCC-TCTTTCTTCCTT
1 TTTTCCTTTTTTCTT-TTT
9551028 TTTTCCTTTTTTTCTTTTT
1 TTTTCC-TTTTTTCTTTTT
*
9551047 TTTCTCATTTTTT
1 TTT-TCCTTTTTT
9551060 TCATTCATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
17 7 0.17
18 14 0.34
19 11 0.27
20 9 0.22
ACGTcount: A:0.01, C:0.21, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTCCTTTTTTCTTTTT
Found at i:9551057 original size:20 final size:19
Alignment explanation
Indices: 9550998--9551061 Score: 62
Period size: 20 Copynumber: 3.4 Consensus size: 19
9550988 CATCTTTTCC
9550998 TTTTTTCTTTTTTTT-TCCT
1 TTTTTTCTTTTTTTTCT-CT
* *
9551017 CTTTCTTC-CTTTTTTC-CT
1 -TTTTTTCTTTTTTTTCTCT
9551035 TTTTTTCTTTTTTTTCTCAT
1 TTTTTTCTTTTTTTTCTC-T
9551055 TTTTTTC
1 TTTTTTC
9551062 ATTCATTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
17 6 0.17
18 9 0.25
19 7 0.19
20 14 0.39
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTTTTCTTTTTTTTCTCT
Found at i:9551060 original size:13 final size:13
Alignment explanation
Indices: 9551042--9551080 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
9551032 CCTTTTTTTC
9551042 TTTTTTTTCTCAT
1 TTTTTTTTCTCAT
*
9551055 TTTTTTCAT-TCAT
1 TTTTTT-TTCTCAT
9551068 TTTTTTTTCTCAT
1 TTTTTTTTCTCAT
9551081 CTTTCACCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
12 1 0.05
13 20 0.91
14 1 0.05
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTTTTTTCTCAT
Found at i:9551092 original size:24 final size:25
Alignment explanation
Indices: 9551042--9551092 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 25
9551032 CCTTTTTTTC
* **
9551042 TTTTTTTTCTCATTTTTTTCATTCAT
1 TTTTTTTTCTCA-TTCTTTCACCCAT
9551068 TTTTTTTTCTCA-TCTTTCACCCAT
1 TTTTTTTTCTCATTCTTTCACCCAT
9551092 T
1 T
9551093 ATTGATATCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 10 0.45
26 12 0.55
ACGTcount: A:0.12, C:0.22, G:0.00, T:0.67
Consensus pattern (25 bp):
TTTTTTTTCTCATTCTTTCACCCAT
Found at i:9555168 original size:59 final size:58
Alignment explanation
Indices: 9555076--9555258 Score: 228
Period size: 57 Copynumber: 3.2 Consensus size: 58
9555066 GTTCTTTTTT
* * *
9555076 TTTTATTTTTAAGAAAAATTGATACCTTAAACTTTTCCTTAAAAATGTTTTTGTGAAAA
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTT-TGAAAA
* *
9555135 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTT-TTTCAAAAATGGTTTTTGAAAA
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTT-AAAAATGTTTTTTGAAAA
* * * * *
9555193 -TTTATTTTCAAGGAAATTTGATACTTTCAAGTTTTCCTCAAAAATATTTTTT-AAAGA
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTTGAAA-A
9555250 TTTTATTTT
1 TTTTATTTT
9555259 TTTATTTTTA
Statistics
Matches: 108, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
56 3 0.03
57 44 0.41
58 17 0.16
59 44 0.41
ACGTcount: A:0.35, C:0.09, G:0.08, T:0.48
Consensus pattern (58 bp):
TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTTGAAAA
Found at i:9555218 original size:57 final size:59
Alignment explanation
Indices: 9555076--9555258 Score: 214
Period size: 59 Copynumber: 3.2 Consensus size: 59
9555066 GTTCTTTTTT
* * * *
9555076 TTTTATTTTTAAGAAAAATTGATACCTTAAACTTTTCCTT-AAAAATGTTTTTGTGAAAA
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTT-CTTCAAAAATGGTTTTGTGAAAA
*
9555135 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTTTTCAAAAATGGTTTT-TGAAAA
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCTTCAAAAATGGTTTTGTGAAAA
* * * * * *
9555193 -TTTATTTTCAAGGAAATTTGATACTTTCAAGTTTTCCTCAAAAAT-ATTTT-TTAAAGA
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCTTCAAAAATGGTTTTGTGAAA-A
9555250 TTTTATTTT
1 TTTTATTTT
9555259 TTTATTTTTA
Statistics
Matches: 109, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
56 8 0.07
57 41 0.38
58 16 0.15
59 44 0.40
ACGTcount: A:0.35, C:0.09, G:0.08, T:0.48
Consensus pattern (59 bp):
TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCTTCAAAAATGGTTTTGTGAAAA
Found at i:9556723 original size:21 final size:21
Alignment explanation
Indices: 9556679--9556743 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 21
9556669 AGATAGACCA
9556679 TAAAATAAAAAT-AAAAAATGC
1 TAAAATAAAAATAAAAAAAT-C
9556700 T-AAATACAAAATAAAAAAATC
1 TAAAATA-AAAATAAAAAAATC
9556721 TAAAATAAAAATGAATAAAAATC
1 TAAAATAAAAAT-AA-AAAAATC
9556744 CCTACAATCG
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
20 5 0.13
21 13 0.33
22 14 0.36
23 7 0.18
ACGTcount: A:0.71, C:0.06, G:0.03, T:0.20
Consensus pattern (21 bp):
TAAAATAAAAATAAAAAAATC
Found at i:9563226 original size:73 final size:71
Alignment explanation
Indices: 9563131--9563272 Score: 214
Period size: 73 Copynumber: 2.0 Consensus size: 71
9563121 AAAATGTTTT
* * *
9563131 ATTTTTTTGAAATTTTAATTTCAAAGAAAATTGATACTTTCAATTTTTCCTC-AAAATATTTTTT
1 ATTTTTTTGAAATTTTAATTTCAAAGAAAATTAATACTTTCAACTTTTCCCCAAAAATATTTTTT
9563195 GAAAAAA
66 -AAAAAA
*
9563202 ATTTATTTTAGAAATTTTACTTTCAAAGAAAATTAATACTTTCAACTTTTCCCCAAAAATATTTT
1 ATTT-TTTT-GAAATTTTAATTTCAAAGAAAATTAATACTTTCAACTTTTCCCCAAAAATATTTT
9563267 TTAAAA
64 TTAAAA
9563273 CCTTTTTTAT
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
71 4 0.06
72 4 0.06
73 44 0.69
74 12 0.19
ACGTcount: A:0.40, C:0.11, G:0.04, T:0.45
Consensus pattern (71 bp):
ATTTTTTTGAAATTTTAATTTCAAAGAAAATTAATACTTTCAACTTTTCCCCAAAAATATTTTTT
AAAAAA
Found at i:9564255 original size:4 final size:4
Alignment explanation
Indices: 9564248--9564336 Score: 65
Period size: 4 Copynumber: 22.0 Consensus size: 4
9564238 ACTAATAGAT
* * * * *
9564248 AATA AATA AATA AATA TATT AATA GAT- AATA AAAA AATA TTAATA GATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA --AATA AATA
* * *
9564297 AATA ACA-A AATA AAAA AATA TATT AATA AATA AATA AATA
1 AATA A-ATA AATA AATA AATA AATA AATA AATA AATA AATA
9564337 CAAATAAAAA
Statistics
Matches: 64, Mismatches: 16, Indels: 10
0.71 0.18 0.11
Matches are distributed among these distances:
3 3 0.05
4 56 0.88
5 1 0.02
6 4 0.06
ACGTcount: A:0.69, C:0.01, G:0.02, T:0.28
Consensus pattern (4 bp):
AATA
Found at i:9564264 original size:27 final size:27
Alignment explanation
Indices: 9564226--9564286 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
9564216 AAAAATAGAT
*
9564226 AAAAATATATATACTAATAGATAATAA
1 AAAAATAAATATACTAATAGATAATAA
* *
9564253 ATAAATAAATATATTAATAGATAATAA
1 AAAAATAAATATACTAATAGATAATAA
9564280 AAAAATA
1 AAAAATA
9564287 TTAATAGATA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.30
Consensus pattern (27 bp):
AAAAATAAATATACTAATAGATAATAA
Found at i:9564289 original size:21 final size:22
Alignment explanation
Indices: 9564249--9564308 Score: 86
Period size: 22 Copynumber: 2.7 Consensus size: 22
9564239 CTAATAGATA
9564249 ATAAATAAATAAATATATTAATAG
1 ATAAATAAA-AAA-ATATTAATAG
9564273 AT-AATAAAAAAATATTAATAG
1 ATAAATAAAAAAATATTAATAG
*
9564294 ATAAATAACAAAATA
1 ATAAATAAAAAAATA
9564309 AAAAAATATA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
21 12 0.35
22 14 0.41
23 6 0.18
24 2 0.06
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.28
Consensus pattern (22 bp):
ATAAATAAAAAAATATTAATAG
Found at i:9564311 original size:27 final size:25
Alignment explanation
Indices: 9564226--9564311 Score: 81
Period size: 27 Copynumber: 3.4 Consensus size: 25
9564216 AAAAATAGAT
* *
9564226 AAAAATATATATACTAATAGATAATA
1 AAAAATA-AAATATTAATAGATAATA
9564252 AATAAATAAATATATTAATAGATAAT-
1 AA-AAATAAA-ATATTAATAGATAATA
9564278 --AAA-AAAATATTAATAGATAAATA
1 AAAAATAAAATATTAATAGAT-AATA
9564301 ACAAAATAAAA
1 A-AAAATAAAA
9564312 AAATATATTA
Statistics
Matches: 50, Mismatches: 2, Indels: 15
0.75 0.03 0.22
Matches are distributed among these distances:
21 12 0.24
22 6 0.12
23 3 0.06
26 6 0.12
27 23 0.46
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.28
Consensus pattern (25 bp):
AAAAATAAAATATTAATAGATAATA
Found at i:9564316 original size:24 final size:24
Alignment explanation
Indices: 9564214--9564334 Score: 67
Period size: 24 Copynumber: 5.1 Consensus size: 24
9564204 GATAAAGTAA
*
9564214 AAAAAAATAGAT-AA-AAATATAT
1 AAAAAAATAGATAAATAAATAAAT
* **
9564236 ATACTAATAGAT-AATAAATAAAT
1 AAAAAAATAGATAAATAAATAAAT
9564259 AAATATATTAATAGAT-AATAAA-AAA-
1 AAA-A-A--AATAGATAAATAAATAAAT
* **
9564284 ATATTAATAGATAAATAACA-AAAT
1 AAAAAAATAGATAAATAA-ATAAAT
* *
9564308 AAAAAAATATATTAATAAATAAAT
1 AAAAAAATAGATAAATAAATAAAT
9564332 AAA
1 AAA
9564335 TACAAATAAA
Statistics
Matches: 75, Mismatches: 15, Indels: 16
0.71 0.14 0.15
Matches are distributed among these distances:
21 7 0.09
22 16 0.21
23 14 0.19
24 20 0.27
25 2 0.03
26 3 0.04
27 13 0.17
ACGTcount: A:0.68, C:0.02, G:0.03, T:0.27
Consensus pattern (24 bp):
AAAAAAATAGATAAATAAATAAAT
Found at i:9564346 original size:32 final size:31
Alignment explanation
Indices: 9564256--9564348 Score: 89
Period size: 32 Copynumber: 2.9 Consensus size: 31
9564246 ATAATAAATA
* * *
9564256 AATAAATATATTAATAGATAATAAAAAAATATT
1 AATAAATAAATAAATA-A-AATAAAAATATATT
* *
9564289 AATAGATAAATAACA-AAATAAAAAAATATATT
1 AATAAATAAATAA-ATAAA-ATAAAAATATATT
9564321 AATAAATAAATAAATACAAATAAAAATA
1 AATAAATAAATAAATA-AAATAAAAATA
9564349 CAAATGGGCT
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
31 2 0.04
32 33 0.67
33 13 0.27
34 1 0.02
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (31 bp):
AATAAATAAATAAATAAAATAAAAATATATT
Found at i:9564594 original size:44 final size:44
Alignment explanation
Indices: 9564545--9564699 Score: 188
Period size: 44 Copynumber: 3.5 Consensus size: 44
9564535 ATCAAACCTC
* *
9564545 CTCTAAGCAGAGGCTCAACGACTTAAAAGCAATAAACATAGCTT
1 CTCTAATCAGAGGCTCAACGACTTAAAAGAAATAAACATAGCTT
* *
9564589 CTCTAATCAGAGGCTCAATGACTTAAAA-AAATAAACATAGCTC
1 CTCTAATCAGAGGCTCAACGACTTAAAAGAAATAAACATAGCTT
* *** * *
9564632 CTCTGATCAGAGGCTCAACGACTTTGGAGAAATAAATAAAGCTT
1 CTCTAATCAGAGGCTCAACGACTTAAAAGAAATAAACATAGCTT
*
9564676 CTCTAAAT-AGAGGCTTAACGACTT
1 CTCT-AATCAGAGGCTCAACGACTT
9564700 TGAAAAAATA
Statistics
Matches: 95, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
43 36 0.38
44 57 0.60
45 2 0.02
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.24
Consensus pattern (44 bp):
CTCTAATCAGAGGCTCAACGACTTAAAAGAAATAAACATAGCTT
Found at i:9564675 original size:87 final size:88
Alignment explanation
Indices: 9564542--9564736 Score: 218
Period size: 87 Copynumber: 2.2 Consensus size: 88
9564532 TTGATCAAAC
* *
9564542 CTCCTCTAAGCAGAGGCTCAACGACTTAAAAGCAATAAACATAGCTTCTCT-AATCAGAGGCTCA
1 CTCCTCTAAGCAGAGGCTCAACGACTTAAAAGAAATAAACAAAGCTTCTCTAAAT-AGAGGCTCA
*
9564606 ATGAC-TTAAAAAAATAAACATAG
65 ACGACTTTAAAAAAATAAACATAG
* * *** * *
9564629 CTCCTCTGATCAGAGGCTCAACGACTTTGGAGAAATAAATAAAGCTTCTCTAAATAGAGGCTTAA
1 CTCCTCTAAGCAGAGGCTCAACGACTTAAAAGAAATAAACAAAGCTTCTCTAAATAGAGGCTCAA
* *
9564694 CGACTTTGAAAAAAT-AA-ATTG
66 CGACTTTAAAAAAATAAACATAG
* * *
9564715 CTCTTCTAAACTGAGGCTCAAC
1 CTCCTCTAAGCAGAGGCTCAAC
9564737 AAATTTGAAA
Statistics
Matches: 90, Mismatches: 16, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
86 21 0.23
87 57 0.63
88 12 0.13
ACGTcount: A:0.39, C:0.21, G:0.15, T:0.25
Consensus pattern (88 bp):
CTCCTCTAAGCAGAGGCTCAACGACTTAAAAGAAATAAACAAAGCTTCTCTAAATAGAGGCTCAA
CGACTTTAAAAAAATAAACATAG
Found at i:9564721 original size:44 final size:43
Alignment explanation
Indices: 9564553--9564773 Score: 158
Period size: 44 Copynumber: 5.1 Consensus size: 43
9564543 TCCTCTAAGC
*
9564553 AGAGGCTCAACGAC-TT-AAAAGCAATAAACATAGCT-TCTCT-AAT
1 AGAGGCTCAACGACTTTGAAAA--AAT-AA-ATTGCTCTCTCTAAAT
* * * *
9564596 CAGAGGCTCAATGAC-TTAAAAAAATAAACATAGCTC-CTCT-GAT
1 -AGAGGCTCAACGACTTTGAAAAAAT-AA-ATTGCTCTCTCTAAAT
* * *
9564639 CAGAGGCTCAACGACTTTGGAGAAATAAATAAAGCT-TCTCTAAAT
1 -AGAGGCTCAACGACTTTGAAAAAATAAAT--TGCTCTCTCTAAAT
*
9564684 AGAGGCTTAACGACTTTGAAAAAATAAATTGCTCT-TCTAAACT
1 AGAGGCTCAACGACTTTGAAAAAATAAATTGCTCTCTCTAAA-T
* * *
9564727 -GAGGCTCAACAAATTTGAAAAAATAAATTGCTC-CTCTAAAC
1 AGAGGCTCAACGACTTTGAAAAAATAAATTGCTCTCTCTAAAT
9564768 AGAGGC
1 AGAGGC
9564774 ACCATAACTT
Statistics
Matches: 151, Mismatches: 15, Indels: 24
0.79 0.08 0.13
Matches are distributed among these distances:
42 52 0.34
43 37 0.25
44 56 0.37
45 6 0.04
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.24
Consensus pattern (43 bp):
AGAGGCTCAACGACTTTGAAAAAATAAATTGCTCTCTCTAAAT
Found at i:9564803 original size:41 final size:41
Alignment explanation
Indices: 9564750--9564841 Score: 150
Period size: 41 Copynumber: 2.2 Consensus size: 41
9564740 TTTGAAAAAA
* *
9564750 TAAATTGCTCCTCTAAACAGAGGCACCATAACTTTT-AAAGG
1 TAAATTACTCCTCTAAACAGAAGCACCATAACTTTTGAAA-G
9564791 TAAATTACTCCTCTAAACAGAAGCACCATAACTTTTGAAAG
1 TAAATTACTCCTCTAAACAGAAGCACCATAACTTTTGAAAG
9564832 TAAATTACTC
1 TAAATTACTC
9564842 ATTGACAATC
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
41 45 0.94
42 3 0.06
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (41 bp):
TAAATTACTCCTCTAAACAGAAGCACCATAACTTTTGAAAG
Found at i:9565120 original size:16 final size:16
Alignment explanation
Indices: 9565094--9565134 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
9565084 AATATAGTAT
9565094 ATGCTATGCGAAATACA
1 ATGC-ATGCGAAATACA
*
9565111 ATGCATGCGAAATTCA
1 ATGCATGCGAAATACA
9565127 ATGCATGC
1 ATGCATGC
9565135 TATGCAAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 19 0.83
17 4 0.17
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.24
Consensus pattern (16 bp):
ATGCATGCGAAATACA
Found at i:9565830 original size:27 final size:27
Alignment explanation
Indices: 9565799--9565851 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
9565789 TGAGTCCTCC
*
9565799 TTTTTTCTTGTTTTTTC-TTATTTTTTA
1 TTTTTTATTGTTTTTTCATT-TTTTTTA
*
9565826 TTTTTTATTTTTTTTTCATTTTTTTT
1 TTTTTTATTGTTTTTTCATTTTTTTT
9565852 CAAGCATAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.08, C:0.06, G:0.02, T:0.85
Consensus pattern (27 bp):
TTTTTTATTGTTTTTTCATTTTTTTTA
Found at i:9565853 original size:10 final size:9
Alignment explanation
Indices: 9565799--9565852 Score: 56
Period size: 10 Copynumber: 5.8 Consensus size: 9
9565789 TGAGTCCTCC
9565799 TTTTTTCTT
1 TTTTTTCTT
9565808 GTTTTTTCTT
1 -TTTTTTCTT
*
9565818 ATTTTTTATT
1 -TTTTTTCTT
*
9565828 TTTTAT-TT
1 TTTTTTCTT
9565836 TTTTTTCATT
1 TTTTTTC-TT
9565846 TTTTTTC
1 TTTTTTC
9565853 AAGCATAGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
8 7 0.18
9 5 0.13
10 26 0.68
ACGTcount: A:0.07, C:0.07, G:0.02, T:0.83
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:9573101 original size:15 final size:15
Alignment explanation
Indices: 9573081--9573110 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9573071 TTTAAATATG
*
9573081 ATGAATGAGAATGCA
1 ATGAATGAAAATGCA
9573096 ATGAATGAAAATGCA
1 ATGAATGAAAATGCA
9573111 TGTATGCGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.23, T:0.20
Consensus pattern (15 bp):
ATGAATGAAAATGCA
Found at i:9576395 original size:60 final size:61
Alignment explanation
Indices: 9576330--9576493 Score: 213
Period size: 61 Copynumber: 2.7 Consensus size: 61
9576320 TGCTTTTGTA
* * *
9576330 CAAGAAAAATTGATACTTTCAACTTTTTCTTAAAATATTTTTCTTGAT-AATTTTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAATATTTTTCTTGATGAAATTTTAATTT
* * * * * * **
9576390 TAAGAAAAATTGGTACTTCCAACTTTTCCTCAAAATGTTTTTTTTTTTGAAATTTTAATTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAATATTTTTCTTGATGAAATTTTAATTT
9576451 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAATACTTTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAATA-TTTTT
9576494 GAAAAAATTT
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
60 39 0.45
61 42 0.49
62 5 0.06
ACGTcount: A:0.34, C:0.12, G:0.06, T:0.48
Consensus pattern (61 bp):
CAAGAAAAATTGATACTTTCAACTTTTCCTTAAAATATTTTTCTTGATGAAATTTTAATTT
Found at i:9576532 original size:72 final size:72
Alignment explanation
Indices: 9576433--9576570 Score: 197
Period size: 72 Copynumber: 1.9 Consensus size: 72
9576423 AATGTTTTTT
* *
9576433 TTTTTGAAATTTTAATTTCAAGAAAAATTGATACTTTCAACTTTTCCT-TAAAATACTTTTTGAA
1 TTTTAGAAATTTTAATTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTGAA
9576497 AAAATTTA
65 AAAATTTA
** * * *
9576505 TTTTAGAAATTTTTCTTTCAAGGAAAATTGATACTTTTAACTTTTCCTCAAAAATATTTTTTAAA
1 TTTTAGAAATTTTAATTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTGAAA
9576570 A
66 A
9576571 CCTTTTTTAT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
72 52 0.90
73 6 0.10
ACGTcount: A:0.38, C:0.10, G:0.06, T:0.46
Consensus pattern (72 bp):
TTTTAGAAATTTTAATTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTGAAA
AAATTTA
Found at i:9576558 original size:59 final size:59
Alignment explanation
Indices: 9576495--9576637 Score: 132
Period size: 60 Copynumber: 2.4 Consensus size: 59
9576485 ATACTTTTTG
* * *
9576495 AAAAAAT-TTATTTTAGAAA-TTTTT-CTTTCAAGGAAAATTGATACTTTTAACTTTTCCTC
1 AAAAAATATT-TTTTA-AAACTTTTTACTTTCAA-AAAAATTGATACTTTCAACTTTCCCTC
* *
9576554 -AAAAATATTTTTTAAAACCTTTTTTATTTTCAAAAAAATTGATACTTTCAACTTTCCCTTA
1 AAAAAATATTTTTTAAAA-C-TTTTTACTTTCAAAAAAATTGATACTTTCAACTTTCCC-TC
* *
9576615 AAAATAATTTTTTTTGAAACTTT
1 AAAA-AATATTTTTTAAAACTTT
9576638 AATTTTAAGG
Statistics
Matches: 69, Mismatches: 7, Indels: 14
0.77 0.08 0.16
Matches are distributed among these distances:
57 3 0.04
58 11 0.16
59 2 0.03
60 27 0.39
61 10 0.14
62 4 0.06
63 12 0.17
ACGTcount: A:0.37, C:0.12, G:0.04, T:0.47
Consensus pattern (59 bp):
AAAAAATATTTTTTAAAACTTTTTACTTTCAAAAAAATTGATACTTTCAACTTTCCCTC
Found at i:9576652 original size:60 final size:60
Alignment explanation
Indices: 9576520--9576652 Score: 148
Period size: 60 Copynumber: 2.2 Consensus size: 60
9576510 GAAATTTTTC
* * *
9576520 TTTCAAGGAAAATTGATACTTTTAACTTTTCCTCAAAAATATTTTTTAAAACCTTTTTTAT
1 TTTCAAGGAAAATTGATACTTTCAACTTTCCCTCAAAAATATTTTTTAAAACC-TTTTAAT
* * *
9576581 TTTCAA-AAAAATTGATACTTTCAACTTTCCCTTAAAAATAATTTTTTTTGAAA-C-TTTAAT
1 TTTCAAGGAAAATTGATACTTTCAACTTTCCCTCAAAAAT-A--TTTTTTAAAACCTTTTAAT
9576641 TTT-AAGGAAAAT
1 TTTCAAGGAAAAT
9576653 CAAAAATATA
Statistics
Matches: 61, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
59 2 0.03
60 42 0.69
61 7 0.11
62 1 0.02
63 9 0.15
ACGTcount: A:0.38, C:0.12, G:0.05, T:0.45
Consensus pattern (60 bp):
TTTCAAGGAAAATTGATACTTTCAACTTTCCCTCAAAAATATTTTTTAAAACCTTTTAAT
Found at i:9576741 original size:9 final size:9
Alignment explanation
Indices: 9576711--9576764 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
9576701 CTAATTTAGA
9576711 AAATAATAAT
1 AAATAA-AAT
9576721 -AATAATAAT
1 AAATAA-AAT
9576730 AAATAAAAT
1 AAATAAAAT
9576739 AAAT-AAAT
1 AAATAAAAT
9576747 AAATAGAAA-
1 AAATA-AAAT
9576756 AAGATAAAA
1 AA-ATAAAA
9576765 AAAACCTTAA
Statistics
Matches: 40, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
8 8 0.20
9 21 0.52
10 11 0.28
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.22
Consensus pattern (9 bp):
AAATAAAAT
Found at i:9576743 original size:13 final size:12
Alignment explanation
Indices: 9576710--9576749 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 12
9576700 TCTAATTTAG
9576710 AAAATAAT-AAT
1 AAAATAATAAAT
9576721 AATAATAATAAAT
1 AA-AATAATAAAT
9576734 AAAATAAATAAAT
1 AAAAT-AATAAAT
9576747 AAA
1 AAA
9576750 TAGAAAAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
11 2 0.08
12 9 0.35
13 15 0.58
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (12 bp):
AAAATAATAAAT
Found at i:9577590 original size:4 final size:4
Alignment explanation
Indices: 9577583--9577689 Score: 61
Period size: 4 Copynumber: 28.0 Consensus size: 4
9577573 ATAGATAATT
* * *
9577583 AATA AATA AATA AATA TATT AATA GATA AAT- AATA AA-A AATA TTAATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA --AATA
* * *
9577631 GATA AAT- AATAA AATA AA-A ATATA TATT AATA AATA AAT- AAT- AAT-
1 AATA AATA AAT-A AATA AATA A-ATA AATA AATA AATA AATA AATA AATA
9577676 AAT- AAT- AATA AATA
1 AATA AATA AATA AATA
9577690 TAAATATAAA
Statistics
Matches: 82, Mismatches: 12, Indels: 18
0.73 0.11 0.16
Matches are distributed among these distances:
3 26 0.32
4 48 0.59
5 4 0.05
6 4 0.05
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (4 bp):
AATA
Found at i:9577611 original size:24 final size:23
Alignment explanation
Indices: 9577584--9577691 Score: 100
Period size: 24 Copynumber: 4.7 Consensus size: 23
9577574 TAGATAATTA
9577584 ATAAATAAATAAATATATTAATAG
1 ATAAAT-AATAAATATATTAATAG
*
9577608 ATAAATAATAAAAAATATTAATAG
1 ATAAATAAT-AAATATATTAATAG
** *
9577632 ATAAATAATAAA-ATAAAAATAT
1 ATAAATAATAAATATATTAATAG
9577654 ATATTAATAAATAAATA-A-TAATA-
1 ATA--AAT-AATAAATATATTAATAG
9577677 AT-AATAATAAATATA
1 ATAAATAATAAATATA
9577692 AATATAAATA
Statistics
Matches: 73, Mismatches: 5, Indels: 16
0.78 0.05 0.17
Matches are distributed among these distances:
19 8 0.11
20 4 0.05
22 10 0.14
23 8 0.11
24 35 0.48
25 7 0.10
26 1 0.01
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (23 bp):
ATAAATAATAAATATATTAATAG
Found at i:9577658 original size:32 final size:33
Alignment explanation
Indices: 9577583--9577695 Score: 117
Period size: 32 Copynumber: 3.4 Consensus size: 33
9577573 ATAGATAATT
*
9577583 AATAAATA--AATAAATATATTAATAGATAAATAATA
1 AATAAATATTAATAAATA-AATAATA-AT-AATAA-A
*
9577618 AA-AAATATTAATAGATAAATAATAA-AATAAA
1 AATAAATATTAATAAATAAATAATAATAATAAA
* *
9577649 AATATATATTAATAAATAAATAATAATAATAAT
1 AATAAATATTAATAAATAAATAATAATAATAAA
*
9577682 AATAAATATAAATA
1 AATAAATATTAATA
9577696 TAAATACAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
31 3 0.04
32 26 0.39
33 17 0.25
34 6 0.09
35 8 0.12
36 7 0.10
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (33 bp):
AATAAATATTAATAAATAAATAATAATAATAAA
Found at i:9577662 original size:56 final size:58
Alignment explanation
Indices: 9577571--9577699 Score: 171
Period size: 56 Copynumber: 2.3 Consensus size: 58
9577561 ATATGTATAC
* * *
9577571 TAATAGATAATTAAT-AAATAAATAAATATATTAATAGATAAATAATAA-AA-AATAT
1 TAATAGATAAATAATAAAATAAATAAATATATTAATAAATAAATAATAATAATAATAA
9577626 TAATAGATAAATAATAAAATAAA-AATATATATTAATAAATAAATAATAATAATAATAA
1 TAATAGATAAATAATAAAATAAATAA-ATATATTAATAAATAAATAATAATAATAATAA
*
9577684 TAA-ATATAAAT-ATAAA
1 TAATAGATAAATAATAAA
9577700 TACAAATGGG
Statistics
Matches: 66, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
55 16 0.24
56 34 0.52
57 9 0.14
58 7 0.11
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (58 bp):
TAATAGATAAATAATAAAATAAATAAATATATTAATAAATAAATAATAATAATAATAA
Found at i:9577698 original size:24 final size:24
Alignment explanation
Indices: 9577571--9577698 Score: 79
Period size: 24 Copynumber: 5.1 Consensus size: 24
9577561 ATATGTATAC
9577571 TAATAGATAATTAAT-AA-ATAAATA
1 TAATA-ATAA-TAATAAATATAAATA
9577595 -AATATATTAATAGATAAATAATAAA-A
1 TAATA-A-TAATA-ATAAAT-ATAAATA
*
9577621 -AATATTAATAGATAAATAATAAA-A
1 TAATAATAATA-ATAAAT-ATAAATA
* * *
9577645 TAAAAATATATATTAATAAATAAATAA
1 TAATAATA-ATAATAA-ATATAAAT-A
9577672 TAATAATAATAATAAATATAAATA
1 TAATAATAATAATAAATATAAATA
9577696 TAA
1 TAA
9577699 ATACAAATGG
Statistics
Matches: 85, Mismatches: 9, Indels: 20
0.75 0.08 0.18
Matches are distributed among these distances:
23 7 0.08
24 28 0.33
25 22 0.26
26 15 0.18
27 13 0.15
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (24 bp):
TAATAATAATAATAAATATAAATA
Found at i:9580784 original size:18 final size:18
Alignment explanation
Indices: 9580757--9580866 Score: 93
Period size: 18 Copynumber: 6.3 Consensus size: 18
9580747 CCTTTGTTCT
9580757 TGATACATTTGAGGTGGA
1 TGATACATTTGAGGTGGA
*
9580775 TGATATATTTGA---GGA
1 TGATACATTTGAGGTGGA
* *
9580790 TGATAAATTT-ATGGTGGG
1 TGATACATTTGA-GGTGGA
* * **
9580808 GGATACATTTGTGGTAAA
1 TGATACATTTGAGGTGGA
*
9580826 TGATACATTTAAGGTGGA
1 TGATACATTTGAGGTGGA
*
9580844 GGATACATTTGAGGTGGA
1 TGATACATTTGAGGTGGA
*
9580862 GGATA
1 TGATA
9580867 ACCATATGGA
Statistics
Matches: 71, Mismatches: 16, Indels: 10
0.73 0.16 0.10
Matches are distributed among these distances:
14 1 0.01
15 12 0.17
18 58 0.82
ACGTcount: A:0.31, C:0.04, G:0.32, T:0.34
Consensus pattern (18 bp):
TGATACATTTGAGGTGGA
Found at i:9580880 original size:21 final size:18
Alignment explanation
Indices: 9580827--9580882 Score: 58
Period size: 18 Copynumber: 2.9 Consensus size: 18
9580817 TGTGGTAAAT
**
9580827 GATACATTTAAGGTGGAG
1 GATACATTGGAGGTGGAG
*
9580845 GATACATTTGAGGTGGAG
1 GATACATTGGAGGTGGAG
9580863 GATAACCATATGGAGGTGGA
1 GAT-A-CAT-TGGAGGTGGA
9580883 TAACCATGAG
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
18 20 0.61
19 1 0.03
20 3 0.09
21 9 0.27
ACGTcount: A:0.32, C:0.07, G:0.36, T:0.25
Consensus pattern (18 bp):
GATACATTGGAGGTGGAG
Found at i:9581244 original size:6 final size:6
Alignment explanation
Indices: 9581208--9581242 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
9581198 AAATTTGAAT
* *
9581208 CATCAC CATCAC CATTAC CATCAC CATCAT CATCA
1 CATCAC CATCAC CATCAC CATCAC CATCAC CATCA
9581243 TCTAGACTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.34, C:0.43, G:0.00, T:0.23
Consensus pattern (6 bp):
CATCAC
Found at i:9584752 original size:23 final size:23
Alignment explanation
Indices: 9584726--9584772 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
9584716 AATTTCAAAT
9584726 ACAAAATCATAAAT-TAATATTTA
1 ACAAAATCA-AAATATAATATTTA
*
9584749 ACAAAATTAAAATATAATATTTA
1 ACAAAATCAAAATATAATATTTA
9584772 A
1 A
9584773 TTTTAATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 4 0.18
23 18 0.82
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (23 bp):
ACAAAATCAAAATATAATATTTA
Found at i:9588482 original size:20 final size:19
Alignment explanation
Indices: 9588454--9588496 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
9588444 GATTTAACCG
*
9588454 ATTTTAATCGACTTAATTAC
1 ATTTCAATCGA-TTAATTAC
*
9588474 ATTTCAATCTATTAATTAC
1 ATTTCAATCGATTAATTAC
9588493 ATTT
1 ATTT
9588497 TAAAAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.35, C:0.14, G:0.02, T:0.49
Consensus pattern (19 bp):
ATTTCAATCGATTAATTAC
Found at i:9588992 original size:15 final size:15
Alignment explanation
Indices: 9588964--9589001 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
9588954 CTAAATGGGT
9588964 CATAAATT-GATATA
1 CATAAATTAGATATA
9588978 CATAAATTAGATATA
1 CATAAATTAGATATA
9588993 CATAAATTA
1 CATAAATTA
9589002 TGCAACTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 8 0.35
15 15 0.65
ACGTcount: A:0.53, C:0.08, G:0.05, T:0.34
Consensus pattern (15 bp):
CATAAATTAGATATA
Found at i:9592791 original size:2 final size:2
Alignment explanation
Indices: 9592784--9592810 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
9592774 ATATCTCTAT
9592784 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
9592811 GTGTGTGTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9592815 original size:2 final size:2
Alignment explanation
Indices: 9592810--9592842 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
9592800 TATATATATA
9592810 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
9592843 TAAATCATAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:9593263 original size:28 final size:28
Alignment explanation
Indices: 9593175--9593267 Score: 77
Period size: 28 Copynumber: 3.4 Consensus size: 28
9593165 TTATTGAAAG
*
9593175 TTTTTATTTTCTAACATTTATATTTTGA-
1 TTTTGATTTT-TAACATTTATATTTTGAC
* ***
9593203 TTGTT-ATTTATTAA-AATT-TATTGAAAC
1 TT-TTGATTT-TTAACATTTATATTTTGAC
*
9593230 CTTTGATTTTTAACATTTATATTTTGAC
1 TTTTGATTTTTAACATTTATATTTTGAC
9593258 TTTTGATTTT
1 TTTTGATTTT
9593268 CTTATGACAT
Statistics
Matches: 49, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
26 11 0.22
27 11 0.22
28 24 0.49
29 3 0.06
ACGTcount: A:0.27, C:0.06, G:0.06, T:0.60
Consensus pattern (28 bp):
TTTTGATTTTTAACATTTATATTTTGAC
Found at i:9595471 original size:909 final size:909
Alignment explanation
Indices: 9593205--9595989 Score: 4153
Period size: 909 Copynumber: 3.1 Consensus size: 909
9593195 TATTTTGATT
9593205 GTTATTTATTAAAATTTATTGAAACCTTTGATTTT-TAACATTTATATTTTGACTTTTGATTTTC
1 GTTATTTATTAAAATTTATTGAAACCTTTGATTTTCTAACATTTATATTTTGACTTTTGATTTTC
* *
9593269 TTATGACATGGTTTTTCATTTTTTTTATGAGAAGGTTACATAACTGTATTTCATAGCTCTATTAT
66 TTATGACATGGTTTTTCA-TTTTTTTATGAGAAGGTTACATAAGTGTATTTCATATCTCTATTAT
*
9593334 ATTTTTTCCAATCATGAGATTTTTTTTTATTCTGTTTATAGTTTCATAATTTTTTAATTTTATAA
130 ATTTTTTCCAATCATGAGATTTTTTTTTGTT-TG---A-AGTTTCATAATTTTTTAATTTTATAA
* *
9593399 TCATAATCTATGATTTTAATTTAGTGTTTCAAATTTGTTTTTTAGTCGATTGGTAAATTTTTTTA
190 TCATAATCTATGATTTTTATTTAGTGTTTCAAATTTGTTTTTTAGTCGATTGGT-ATTTTTTTTA
*
9593464 GTATTTGCATTTTTATTA-TTATT-TTTTTTATCATGACCATGATTTTTCATTTCAAATTTAACT
254 GTATTTGCATTTTTATTATTTATTATTTTTTATCATGACCATGATTTTTCATTTCAAATTTGACT
* * *
9593527 TTTAGCCAATTGGAGTATATTATAATTGATAGATTAACTTTTGAAATAAATAATTGGAAGATAAA
319 TTTA-CCAATTGAAGTATATTATAATTGATAGATTAACTTTTGAAATAGATAATTGGAAGAAAAA
* * * *
9593592 AT-TTGTGTTTGTCAATTGCAGGATAGTTATAATCATAAGATTGAATAATGCATTAGCATAGAAA
383 ATATTGTGTTTGTCAATTGCAAGATAGTTACAATCATATGATTGAATAATACATTAGCATAGAAA
* *
9593656 TGATGTTAATTCATGAACGT--AAATAAATTTATTTTTG-T-TA---TT-TTT-TATTATCATTT
448 TGGTGTTAATTCATGAACGTAAAAATAAATTTATTTTTGTTATATTTTTGTTTCTATTTTCATTT
9593712 CTTTAATTTATTTTATCATTTTTGGTACTTTCATAGAGATTTTATATTCATACTGTTATTTGGAA
513 CTTTAATTTATTTTATCATTTTTGGTACTTTCATAGAGATTTTATATTCATACTGTTATTTGGAA
* * *
9593777 TTATAATGTATATCGATTGAAGAATTAGATTCATGAGATTTGTTTTTAATTGTGTTTGCATCTTC
578 TCATAATGTATATCAATTGAAGAATTAGATTCATGAGATTTGTTTTTAATTGTGTTTGCATTTTC
* * *
9593842 ATAATTTTTTTAGTTTTATAATCATAACCTATGCTTTTTTAATTGGTATTTCAAGTTTGGTCTTT
643 ATAA-TTTTTTAATTTTATAATCATAACCTATGCTTTTTTAATTGGTATTTCAAGTTTGTTTTTT
* *
9593907 GGTCAATTGGTGTATATTTTAGTATATGTGCATTTTGATT-TTTTTTCTCAAATATTTTACAATA
707 AGTCAATTGGTGTAT-TTTTAGTATATGTGCATTTTTATTATTTTTTCTCAAATATTTTACAATA
* *
9593971 AATGTCAAGTCCTTTTTTACATAAAGTCTAAATATATATTTCTTAATTTTATTACATAAAATCCA
771 AATGTCAAGTCTTTTTTTACATAAATTCTAAATATATATTTCTTAATTTTATTACATAAAATCC-
* * *
9594036 ATAGACTTTTGGTTGTCAAACATTTGTATGGAATCATGACTTTTGATTTTCTT-ATATTCATGTT
835 ATAGACTTTTGGTTGTCAAACATTTATATGGATTCATGACTTTTGATTTTTTTCATATTCATGTT
*
9594100 CTTTAAAATC
900 CTTTAAAACC
* *
9594110 GTTATTTCTTAAAATTTATTGAAACCTTTGATTTTCTAACATTTATAATTTGACTTTTGATTTTC
1 GTTATTTATTAAAATTTATTGAAACCTTTGATTTTCTAACATTTATATTTTGACTTTTGATTTTC
9594175 TTATGACATGGCTTTTT-A-TTTTTTATGAGAAGGTTACATAAGTGTATTTCATATCTCTATTAT
66 TTATGACATGG-TTTTTCATTTTTTTATGAGAAGGTTACATAAGTGTATTTCATATCTCTATTAT
*
9594238 ATTTTTTCCAATCATGAGATTTTTTTTATTCTGTTTGAAGTTTCATAGATTTTTTAATTTTTTAA
130 ATTTTTTCCAATCATGAGA--TTTTTT-TT-TGTTTGAAGTTTCATA-ATTTTTTAATTTTATAA
* * * *
9594303 TCATAGTCTATTATTTTT-TGTTAGTGTTTCAAATTTGTTTTTTAGTTGATTGGTATATTTTTTA
190 TCATAATCTATGATTTTTAT-TTAGTGTTTCAAATTTGTTTTTTAGTCGATTGGTATTTTTTTTA
* * *
9594367 GTATATGCATTTTTAATATTTGTTATTTTTTATCATGACCATGATTTTTCATTTCAAATTTGACT
254 GTATTTGCATTTTTATTATTTATTATTTTTTATCATGACCATGATTTTTCATTTCAAATTTGACT
* ** * * * *
9594432 TTTACTAATTGAAGTATAAAATAATTTATATATTAATTTTTAAAATAGATAATTGGAAGAAAAAA
319 TTTACCAATTGAAGTATATTATAATTGATAGATTAACTTTTGAAATAGATAATTGGAAGAAAAAA
* * * ** *
9594497 AATTGTGTTTGTCAATTACAACATAGTTACAATCATATGATTGAATAACCCGTTAGCATAGAAAT
384 TATTGTGTTTGTCAATTGCAAGATAGTTACAATCATATGATTGAATAATACATTAGCATAGAAAT
*
9594562 GGTGTTAATTCATGAAAGGTACACAAATAAATTTATTTTTGTTATATTTTTTGTTTCTATTTTCA
449 GGTGTTAATTCATG-AACGTA-A-AAATAAATTTATTTTTGTTATA-TTTTTGTTTCTATTTTCA
*
9594627 TTTCTTTAATTTATTTTATCATTTTTGATACTTTCATAGAGATTTTATATTCATACTG-TATTTG
510 TTTCTTTAATTTATTTTATCATTTTTGGTACTTTCATAGAGATTTTATATTCATACTGTTATTTG
* *
9594691 GAATCGTAATGTATATCAATTGCAGAATTAGATTCATGAGATTTGTTTTTAATTGTGTTTGCATT
575 GAATCATAATGTATATCAATTGAAGAATTAGATTCATGAGATTTGTTTTTAATTGTGTTTGCATT
* * *
9594756 TTTATAATTTTTTAATTTCATAATCATAACCTATGCTTTTTTAATTGGTATTTCAAGTTTTTTTT
640 TTCATAATTTTTTAATTTTATAATCATAACCTATGCTTTTTTAATTGGTATTTCAAGTTTGTTTT
*
9594821 TTAGTCAAGTGGTGTAGTTTTTAGTATATGTGCATTTTTATTATTTTTTCTCAAATATTTTACAA
705 TTAGTCAATTGGTGTA-TTTTTAGTATATGTGCATTTTTATTATTTTTTCTCAAATATTTTACAA
9594886 TAAATGTCAAG-CTTTTTTTACATAAATTCTAAATATATATTTCTTAACTTTT-TTACATAAAAT
769 TAAATGTCAAGTCTTTTTTTACATAAATTCTAAATATATATTTCTTAA-TTTTATTACATAAAAT
9594949 -C-T-GACTTTTGGTTGTCAAACATTTATATGGATTCATGACTTTTGATTTTTTTCATATTCATG
833 CCATAGACTTTTGGTTGTCAAACATTTATATGGATTCATGACTTTTGATTTTTTTCATATTCATG
9595011 TTCTTTAAAACC
898 TTCTTTAAAACC
*
9595023 GTTATTTATTAAAATTTATTGAAACCATTGATTTTCTAA-ATTTATATTTTGACTTTTGATTTTC
1 GTTATTTATTAAAATTTATTGAAACCTTTGATTTTCTAACATTTATATTTTGACTTTTGATTTTC
* *
9595087 TTATGACAT-GTTTTGTCATTTTTTTATGAAAAGGTTACAGAAGTGTATTTCATATCTCTATTAT
66 TTATGACATGGTTTT-TCATTTTTTTATGAGAAGGTTACATAAGTGTATTTCATATCTCTATTAT
9595151 ATTTTTTTTCCAATCATGAG-TTTTTTTTTGTTTGCAA-TTTCATAATTTTTTTTAATTTTATAA
130 A--TTTTTTCCAATCATGAGATTTTTTTTTGTTTG-AAGTTTCATAA--TTTTTTAATTTTATAA
*
9595214 TCATAATCTATGATTTTTATTTAGTATTTCAAATTTGTTTTTTAGTCGATT-G-ATTTTTTTTAG
190 TCATAATCTATGATTTTTATTTAGTGTTTCAAATTTGTTTTTTAGTCGATTGGTATTTTTTTTAG
*
9595277 TATTTGCATTTTTATTATTTTTTATTTTTTATCATGACCATGATTTTTCATTTCAAATTTGACTT
255 TATTTGCATTTTTATTATTTATTATTTTTTATCATGACCATGATTTTTCATTTCAAATTTGACTT
*
9595342 TTACCAATTGAAGTATATTATAATTGATAGATTAACTTTTGAAATAGATAATTAGAAGAAAAAAT
320 TTACCAATTGAAGTATATTATAATTGATAGATTAACTTTTGAAATAGATAATTGGAAGAAAAAAT
* * * *
9595407 ATTGTGTTTGTCAATTGCATGATAATTACAATCATATGATTGAATAATACATTCGCACAGAAATG
385 ATTGTGTTTGTCAATTGCAAGATAGTTACAATCATATGATTGAATAATACATTAGCATAGAAATG
9595472 GTGTTAATTCATGCAACGTAAGTAAATAAATTTATTTTTGTTATATTTCTTGTTTCTATTTTCAT
450 GTGTTAATTCATG-AACGTAA--AAATAAATTTATTTTTGTTATATTT-TTGTTTCTATTTTCAT
*
9595537 TTCTTTAATTTATTTTATCATTTTTGGTACTTTCATAGAGATTTTATATTCTTACTGTTATTTGG
511 TTCTTTAATTTATTTTATCATTTTTGGTACTTTCATAGAGATTTTATATTCATACTGTTATTTGG
* * * *
9595602 AATCATAATATATATTAGTTGAAGAATTAGATTCATGAGATTT-TTTTT-ATTGTATTTGCATTT
576 AATCATAATGTATATCAATTGAAGAATTAGATTCATGAGATTTGTTTTTAATTGTGTTTGCATTT
*
9595665 TCATAATTTTTTAATTTTATAATCATAACCTATGCTTTTTTAATTGGTATCTCAAGTTTGTTTTT
641 TCATAATTTTTTAATTTTATAATCATAACCTATGCTTTTTTAATTGGTATTTCAAGTTTGTTTTT
* * * ** * * *
9595730 GAGACAATTGGTGCATTTTTTTTTAATGTGTGCATTTTTATTATTTTTCCTCAAATATTTAACAA
706 TAGTCAATTGGTGTA-TTTTTAGT-ATATGTGCATTTTTATTATTTTTTCTCAAATATTTTACAA
* * *
9595795 TAAATGTCAAGTCTCTTTTTACATAAATTCTAAATATATATTTCTTTATTTTATTCCATAAAATC
769 TAAATGTCAAGTCTTTTTTTACATAAATTCTAAATATATATTTCTTAATTTTATTACATAAAATC
*
9595860 CAATAGACTTTTGGTTGTCAAACATTTATATGGATTCATGACTTTTGA-CTTTTTCATATTCATG
834 C-ATAGACTTTTGGTTGTCAAACATTTATATGGATTCATGACTTTTGATTTTTTTCATATTCATG
*
9595924 TTCATTAAAACC
898 TTCTTTAAAACC
* * * *
9595936 ATTTTTTATTAAAA-TTGTTGAAACCTTTTGATTTTTTAACATTTATATTTTGAC
1 GTTATTTATTAAAATTTATTGAAACC-TTTGATTTTCTAACATTTATATTTTGAC
9595990 CGTTATTTAT
Statistics
Matches: 1705, Mismatches: 126, Indels: 89
0.89 0.07 0.05
Matches are distributed among these distances:
903 34 0.02
904 182 0.11
905 145 0.09
906 50 0.03
907 9 0.01
908 99 0.06
909 353 0.21
910 124 0.07
911 68 0.04
912 100 0.06
913 152 0.09
914 57 0.03
915 18 0.01
916 137 0.08
917 113 0.07
918 64 0.04
ACGTcount: A:0.30, C:0.09, G:0.11, T:0.51
Consensus pattern (909 bp):
GTTATTTATTAAAATTTATTGAAACCTTTGATTTTCTAACATTTATATTTTGACTTTTGATTTTC
TTATGACATGGTTTTTCATTTTTTTATGAGAAGGTTACATAAGTGTATTTCATATCTCTATTATA
TTTTTTCCAATCATGAGATTTTTTTTTGTTTGAAGTTTCATAATTTTTTAATTTTATAATCATAA
TCTATGATTTTTATTTAGTGTTTCAAATTTGTTTTTTAGTCGATTGGTATTTTTTTTAGTATTTG
CATTTTTATTATTTATTATTTTTTATCATGACCATGATTTTTCATTTCAAATTTGACTTTTACCA
ATTGAAGTATATTATAATTGATAGATTAACTTTTGAAATAGATAATTGGAAGAAAAAATATTGTG
TTTGTCAATTGCAAGATAGTTACAATCATATGATTGAATAATACATTAGCATAGAAATGGTGTTA
ATTCATGAACGTAAAAATAAATTTATTTTTGTTATATTTTTGTTTCTATTTTCATTTCTTTAATT
TATTTTATCATTTTTGGTACTTTCATAGAGATTTTATATTCATACTGTTATTTGGAATCATAATG
TATATCAATTGAAGAATTAGATTCATGAGATTTGTTTTTAATTGTGTTTGCATTTTCATAATTTT
TTAATTTTATAATCATAACCTATGCTTTTTTAATTGGTATTTCAAGTTTGTTTTTTAGTCAATTG
GTGTATTTTTAGTATATGTGCATTTTTATTATTTTTTCTCAAATATTTTACAATAAATGTCAAGT
CTTTTTTTACATAAATTCTAAATATATATTTCTTAATTTTATTACATAAAATCCATAGACTTTTG
GTTGTCAAACATTTATATGGATTCATGACTTTTGATTTTTTTCATATTCATGTTCTTTAAAACC
Done.