Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 5 of 402
Found at i:422409 original size:2 final size:2
Alignment explanation
Indices: 422402--422428 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
422392 AAGAAGGAAA
422402 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
422429 AGAAATGGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:422918 original size:8 final size:9
Alignment explanation
Indices: 422899--422944 Score: 60
Period size: 9 Copynumber: 5.3 Consensus size: 9
422889 ATTTATTTTT
*
422899 AAATAAAAA
1 AAATATAAA
422908 AAAT-TAAA
1 AAATATAAA
422916 AAATATAAA
1 AAATATAAA
*
422925 AAACAT-AA
1 AAATATAAA
422933 AAATATAAA
1 AAATATAAA
422942 AAA
1 AAA
422945 AATTTGAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
8 14 0.44
9 18 0.56
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.17
Consensus pattern (9 bp):
AAATATAAA
Found at i:422925 original size:19 final size:18
Alignment explanation
Indices: 422901--422948 Score: 71
Period size: 17 Copynumber: 2.7 Consensus size: 18
422891 TTATTTTTAA
422901 ATAAAAAAAATTAAAAAAT
1 ATAAAAAAAATT-AAAAAT
*
422920 ATAAAAAACA-TAAAAAT
1 ATAAAAAAAATTAAAAAT
422937 ATAAAAAAAATT
1 ATAAAAAAAATT
422949 TGAATTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 15 0.58
18 2 0.08
19 9 0.35
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (18 bp):
ATAAAAAAAATTAAAAAT
Found at i:434882 original size:42 final size:44
Alignment explanation
Indices: 434759--434910 Score: 186
Period size: 42 Copynumber: 3.5 Consensus size: 44
434749 GAGTGTCAAA
*
434759 GAGCAATTTATTTTTT-TCAAAGTTCTATTGCCTCTATTTTGAT
1 GAGCAATTTATTTTTTCTCAAAGTTCTATTGCCTCTATTTAGAT
* * *
434802 GAGCAAATTATTTTTTCTCAAAGTTTTATTGCTTCTATTTAGAT
1 GAGCAATTTATTTTTTCTCAAAGTTCTATTGCCTCTATTTAGAT
* * * * *
434846 GAGCAATTTA-TTTTT-TCAAAATTCTGTTACCTCTATTTAAAG
1 GAGCAATTTATTTTTTCTCAAAGTTCTATTGCCTCTATTTAGAT
*
434888 GAGTAATTTA-TTTTTCTCAAAGT
1 GAGCAATTTATTTTTTCTCAAAGT
434911 CGTTGAGCCT
Statistics
Matches: 93, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
42 34 0.37
43 26 0.28
44 33 0.35
ACGTcount: A:0.28, C:0.12, G:0.11, T:0.49
Consensus pattern (44 bp):
GAGCAATTTATTTTTTCTCAAAGTTCTATTGCCTCTATTTAGAT
Found at i:444138 original size:14 final size:13
Alignment explanation
Indices: 444121--444164 Score: 56
Period size: 12 Copynumber: 3.5 Consensus size: 13
444111 TATTTAACAG
444121 TAAAAATTTTA-T
1 TAAAAATTTTATT
*
444133 TATAAATTTTA-T
1 TAAAAATTTTATT
444145 TAAAAATATTTATT
1 TAAAAAT-TTTATT
444159 TAAAAA
1 TAAAAA
444165 ATATATCAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
12 17 0.61
13 4 0.14
14 7 0.25
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TAAAAATTTTATT
Found at i:444264 original size:20 final size:19
Alignment explanation
Indices: 444228--444270 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
444218 GTAATAATAC
*
444228 ATTTTAATTTATCAGTTTTT
1 ATTTTAATTTATAAG-TTTT
444248 ATTTTAAATTT-TAAGTTTT
1 ATTTT-AATTTATAAGTTTT
444267 ATTT
1 ATTT
444271 AATCATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 8 0.38
20 8 0.38
21 5 0.24
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.65
Consensus pattern (19 bp):
ATTTTAATTTATAAGTTTT
Found at i:456556 original size:3 final size:3
Alignment explanation
Indices: 456548--456576 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
456538 GTATATTTGG
456548 TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
456577 TATATGCACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (3 bp):
TAC
Found at i:462084 original size:2 final size:2
Alignment explanation
Indices: 462079--462134 Score: 87
Period size: 2 Copynumber: 28.0 Consensus size: 2
462069 TGTGTGTGTG
*
462079 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA GT- TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA
462121 TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA
462135 AAGTTACCCG
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
1 1 0.02
2 49 0.98
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:462135 original size:26 final size:26
Alignment explanation
Indices: 462087--462140 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
462077 TGTATATATA
462087 TATATATATATATATATATATAAAGT
1 TATATATATATATATATATATAAAGT
462113 TATATATATATATATATATATAAAGT
1 TATATATATATATATATATATAAAGT
462139 TA
1 TA
462141 CCCGTTGGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (26 bp):
TATATATATATATATATATATAAAGT
Found at i:467842 original size:2 final size:2
Alignment explanation
Indices: 467835--467883 Score: 73
Period size: 2 Copynumber: 25.0 Consensus size: 2
467825 TTAGGGAACG
* *
467835 AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
467877 AT A- AT AT
1 AT AT AT AT
467884 GCACTTATCC
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (2 bp):
AT
Found at i:472233 original size:3 final size:3
Alignment explanation
Indices: 472225--472249 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
472215 TGTCTTGATT
472225 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
472250 AGATAGAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:473608 original size:2 final size:2
Alignment explanation
Indices: 473601--473634 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
473591 TCACCCTTTC
473601 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
473635 TTCAATTCGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:474898 original size:4 final size:4
Alignment explanation
Indices: 474891--474915 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
474881 AAAAAAGAGC
474891 AAAG AAAG AAAG AAAG AAAG AAAG A
1 AAAG AAAG AAAG AAAG AAAG AAAG A
474916 TTGGTATCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:482160 original size:3 final size:3
Alignment explanation
Indices: 482152--482181 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
482142 ACAGAATGAG
482152 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
482182 AGTGGAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:487682 original size:6 final size:6
Alignment explanation
Indices: 487662--487697 Score: 56
Period size: 6 Copynumber: 6.0 Consensus size: 6
487652 AAATGGGATA
487662 TTATAT ATT-TAT TTATAT TTATAT TTATAT TTATAT
1 TTATAT -TTATAT TTATAT TTATAT TTATAT TTATAT
487698 ATTTTTCTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 2 0.07
6 24 0.86
7 2 0.07
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
TTATAT
Found at i:489582 original size:2 final size:2
Alignment explanation
Indices: 489575--489620 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
489565 CTACGAGTAC
489575 TA TA TA TA TA TA TA TA TA TA TA -A TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
489616 TA TA T
1 TA TA T
489621 TCTCAGATAT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:492035 original size:2 final size:2
Alignment explanation
Indices: 492030--492067 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
492020 ACACACATAC
492030 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
492068 TGGGTCAGAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:506172 original size:2 final size:2
Alignment explanation
Indices: 506165--506199 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
506155 GATTTCTGCC
506165 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
506200 TTAACATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:509685 original size:192 final size:192
Alignment explanation
Indices: 509353--509741 Score: 663
Period size: 192 Copynumber: 2.0 Consensus size: 192
509343 TCTCCTGTAA
509353 TAACAACAAAAGCATGGGGTCAATTAAAAATTAAAAAAAAAAGAAAACCTTTTTGGGTATTTGGA
1 TAACAACAAAAGCATGGGGTCAATTAAAAATTAAAAAAAAAAGAAAACCTTTTTGGGTATTTGGA
* *
509418 ACGTCTTGCATTCAAGCTCAAATTTCAAATTTGAGCTGCCCAAATTGTTCAAATTTTGCACGCTG
66 ACGTCTTACATTCAAGCTCAAATCTCAAATTTGAGCTGCCCAAATTGTTCAAATTTTGCACGCTG
*
509483 TGTGATGGATTTTCTACAGAAAATGCAGGAATTCTAGCACTTTGATACCCAATTAAAGGCAT
131 TGTCATGGATTTTCTACAGAAAATGCAGGAATTCTAGCACTTTGATACCCAATTAAAGGCAT
* * *
509545 TAACGACAAAAGCATGGGGTCACTTAAAAATTAAAAAAAATTA-AAAACCTTTTTGGGTATTTGG
1 TAACAACAAAAGCATGGGGTCAATTAAAAATTAAAAAAAA-AAGAAAACCTTTTTGGGTATTTGG
* *
509609 AATGTCTTACATTCAAGCTCAAATCTCAAATTTGAGCTGTCCAAATTGTTCAAATTTTGCACGCT
65 AACGTCTTACATTCAAGCTCAAATCTCAAATTTGAGCTGCCCAAATTGTTCAAATTTTGCACGCT
** *
509674 GTGTCATGGATTTTCTATGGAAAATGCAGGAATTCTAGCACTTTGATACGCAATTAAAGGCAT
130 GTGTCATGGATTTTCTACAGAAAATGCAGGAATTCTAGCACTTTGATACCCAATTAAAGGCAT
509737 TAACA
1 TAACA
509742 GTCTGGCCAA
Statistics
Matches: 184, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
192 183 0.99
193 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.31
Consensus pattern (192 bp):
TAACAACAAAAGCATGGGGTCAATTAAAAATTAAAAAAAAAAGAAAACCTTTTTGGGTATTTGGA
ACGTCTTACATTCAAGCTCAAATCTCAAATTTGAGCTGCCCAAATTGTTCAAATTTTGCACGCTG
TGTCATGGATTTTCTACAGAAAATGCAGGAATTCTAGCACTTTGATACCCAATTAAAGGCAT
Found at i:511720 original size:3 final size:3
Alignment explanation
Indices: 511714--511741 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
511704 GAGGCAAGTT
511714 ATG ATG ATG ATG ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG A
511742 GAATGAGGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32
Consensus pattern (3 bp):
ATG
Found at i:517317 original size:17 final size:17
Alignment explanation
Indices: 517295--517337 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
517285 CTCTAGCTAA
*
517295 AACTAGAGTTAATCAAC
1 AACTAGAGATAATCAAC
517312 AACTAGAGATAATCAAC
1 AACTAGAGATAATCAAC
517329 AACTAGAGA
1 AACTAGAGA
517338 AACAATTGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.51, C:0.16, G:0.14, T:0.19
Consensus pattern (17 bp):
AACTAGAGATAATCAAC
Found at i:518211 original size:23 final size:22
Alignment explanation
Indices: 518188--518260 Score: 66
Period size: 22 Copynumber: 3.5 Consensus size: 22
518178 TTTTTTATTA
518188 AAAATAATTTAATAAAAATTTT
1 AAAATAATTTAATAAAAATTTT
** *
518210 AATTTAAATTAATAAAAA--TT
1 AAAATAATTTAATAAAAATTTT
518230 --AATAATTT-ATAAAAATTATTT
1 AAAATAATTTAATAAAAA-T-TTT
518251 AAAATAATTT
1 AAAATAATTT
518261 TTTAATTCAA
Statistics
Matches: 39, Mismatches: 6, Indels: 11
0.70 0.11 0.20
Matches are distributed among these distances:
17 7 0.18
18 5 0.13
20 2 0.05
21 2 0.05
22 15 0.38
23 8 0.21
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
AAAATAATTTAATAAAAATTTT
Found at i:518224 original size:22 final size:23
Alignment explanation
Indices: 518196--518238 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
518186 TAAAAATAAT
*
518196 TTAATAAAAATT-TTAATTTAAA
1 TTAATAAAAATTAATAATTTAAA
518218 TTAATAAAAATTAATAATTTA
1 TTAATAAAAATTAATAATTTA
518239 TAAAAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (23 bp):
TTAATAAAAATTAATAATTTAAA
Found at i:518562 original size:2 final size:2
Alignment explanation
Indices: 518555--518591 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
518545 ATTAGGTATG
518555 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
518592 TGTATGGAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:519656 original size:2 final size:2
Alignment explanation
Indices: 519649--519673 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
519639 TGTCCCCAAA
519649 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
519674 GTTTGGCATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:523262 original size:266 final size:267
Alignment explanation
Indices: 522785--523324 Score: 983
Period size: 266 Copynumber: 2.0 Consensus size: 267
522775 CTTTCAGCAA
* *
522785 TTCAGCAAATGAATGTTTCATTGAATAACGTTAAACGTTCTGGAGCAAAAATTATGGATTTATGG
1 TTCAGCAAATGAATGTTTCATTGAATAACATTAAACGTTCCGGAGCAAAAATTATGGATTTATGG
*
522850 GTCCATAGGCTAGCTCTTGGTAGTCTTACTGTGCTTAAACTTTGATATGGCCAAGTTTGAAGTTG
66 GTCCATAGGCCAGCTCTTGGTAGTCTTACTGTGCTTAAACTTTGATATGGCCAAGTTTGAAGTTG
*
522915 TTACGTACTGATGCTTCACCAAGTAATCTGCCAAGTTAATTCTTTCTCCAAATCATCAGGTTTCC
131 TTACGCACTGATGCTTCACCAAGTAATCTGCCAAGTTAATTCTTTCTCCAAATCATCAGGTTTCC
*
522980 TGGGCTTCAGAATAGGCCACATAAAATGGAAAAAGTTTTACCCACTTTCAGCAATAAGCTTGG-T
196 TGGGCTTCAGAATAGGCCACATAAAATGGAAAAAGTTTTACCCACTTTCAGCAATAAGCTAGGTT
523044 TATGTAG
261 TATGTAG
*
523051 TTCAGCAAATGAATGTTTCATTGAGTAACATTAAACGTTCCGGAGCAAAAATTATGGATTTATGG
1 TTCAGCAAATGAATGTTTCATTGAATAACATTAAACGTTCCGGAGCAAAAATTATGGATTTATGG
* *
523116 GTCCATAGGCCAGCTCTTGGTGGTCTTACTGTGCTTAAAGTTTGATATGGCCAAGTTTGAAGTTG
66 GTCCATAGGCCAGCTCTTGGTAGTCTTACTGTGCTTAAACTTTGATATGGCCAAGTTTGAAGTTG
523181 TTACGCACTGATGCTTCACCAAGTAATCTGCCAAGTTAATTCTTTCTCCAAATCATCAGGTTTCC
131 TTACGCACTGATGCTTCACCAAGTAATCTGCCAAGTTAATTCTTTCTCCAAATCATCAGGTTTCC
* *
523246 TGGGCTTCATAATAGGCCACATAAAATGGAAAGAGTTTTACCCACTTTCAGCAATAAGCTAGGTT
196 TGGGCTTCAGAATAGGCCACATAAAATGGAAAAAGTTTTACCCACTTTCAGCAATAAGCTAGGTT
523311 TATGTAG
261 TATGTAG
523318 TTCAGCA
1 TTCAGCA
523325 TTAGATAACC
Statistics
Matches: 263, Mismatches: 10, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
266 248 0.94
267 15 0.06
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (267 bp):
TTCAGCAAATGAATGTTTCATTGAATAACATTAAACGTTCCGGAGCAAAAATTATGGATTTATGG
GTCCATAGGCCAGCTCTTGGTAGTCTTACTGTGCTTAAACTTTGATATGGCCAAGTTTGAAGTTG
TTACGCACTGATGCTTCACCAAGTAATCTGCCAAGTTAATTCTTTCTCCAAATCATCAGGTTTCC
TGGGCTTCAGAATAGGCCACATAAAATGGAAAAAGTTTTACCCACTTTCAGCAATAAGCTAGGTT
TATGTAG
Found at i:523360 original size:2 final size:2
Alignment explanation
Indices: 523355--523390 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
523345 ACTAAAATGA
523355 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
523391 ATATATATAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:526031 original size:37 final size:37
Alignment explanation
Indices: 525976--526050 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
525966 ACATTATTTA
525976 AATTCCTTGAAATATATGTATAGGATGTTCTGATGTG
1 AATTCCTTGAAATATATGTATAGGATGTTCTGATGTG
*
526013 AATTCCTTGAAATCTATGTATAGGATGTTCTGATGTG
1 AATTCCTTGAAATATATGTATAGGATGTTCTGATGTG
526050 A
1 A
526051 TGGACAGAGT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.40
Consensus pattern (37 bp):
AATTCCTTGAAATATATGTATAGGATGTTCTGATGTG
Found at i:527801 original size:23 final size:25
Alignment explanation
Indices: 527770--527820 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 25
527760 AGTACCAACA
*
527770 TTAAGAATTATTTTATTTT-AT-TTT
1 TTAAGAATTA-TGTATTTTAATATTT
527794 TTAA-AATTATGTATTTTAATATTT
1 TTAAGAATTATGTATTTTAATATTT
527818 TTA
1 TTA
527821 TATAATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 7 0.29
23 7 0.29
24 10 0.42
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (25 bp):
TTAAGAATTATGTATTTTAATATTT
Found at i:527851 original size:33 final size:30
Alignment explanation
Indices: 527796--527861 Score: 78
Period size: 33 Copynumber: 2.1 Consensus size: 30
527786 TTTATTTTTT
** *
527796 AAAATTATGTATTTTAATATTTTTATATAATA
1 AAAATTATGTATAATAAAATTTTT-TA-AATA
527828 AAAATTTATGTATAATAAAATTTTTTAAATA
1 AAAA-TTATGTATAATAAAATTTTTTAAATA
527859 AAA
1 AAA
527862 GAAAATCTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
31 7 0.23
32 6 0.20
33 17 0.57
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (30 bp):
AAAATTATGTATAATAAAATTTTTTAAATA
Found at i:527859 original size:17 final size:17
Alignment explanation
Indices: 527814--527861 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 17
527804 GTATTTTAAT
527814 ATTTTTATATAATAAAA
1 ATTTTTATATAATAAAA
* *
527831 ATTTATGTATAAT-AAA
1 ATTTTTATATAATAAAA
527847 ATTTTT-TA-AATAAAA
1 ATTTTTATATAATAAAA
527862 GAAAATCTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 3 0.11
15 5 0.19
16 8 0.30
17 11 0.41
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (17 bp):
ATTTTTATATAATAAAA
Found at i:530250 original size:22 final size:21
Alignment explanation
Indices: 530225--530327 Score: 64
Period size: 22 Copynumber: 4.8 Consensus size: 21
530215 TAAATAAAAA
*
530225 ATAACTTAATAAAAAATAAGTG
1 ATAACTTAATAATAAATAA-TG
* * * * *
530247 ATAAATTAGTAGTTAATTATTG
1 ATAACTTAATA-ATAAATAATG
*
530269 ATAACTTAGTAATAAATCAATG
1 ATAACTTAATAATAAAT-AATG
* * *
530291 ATAACTTAATAGTGAATCATG
1 ATAACTTAATAATAAATAATG
*
530312 TATAATTTAAT-ATAAA
1 -ATAACTTAATAATAAA
530328 ACAATAATAA
Statistics
Matches: 61, Mismatches: 17, Indels: 7
0.72 0.20 0.08
Matches are distributed among these distances:
21 10 0.16
22 47 0.77
23 4 0.07
ACGTcount: A:0.50, C:0.05, G:0.10, T:0.36
Consensus pattern (21 bp):
ATAACTTAATAATAAATAATG
Found at i:530338 original size:43 final size:43
Alignment explanation
Indices: 530280--530363 Score: 116
Period size: 43 Copynumber: 2.0 Consensus size: 43
530270 TAACTTAGTA
* * *
530280 ATAAATCAATGATAACTTAATAGTGAATCAT-GTATAATTTAAT
1 ATAAAACAATAATAACTTAACAGTGAATCATAG-ATAATTTAAT
*
530323 ATAAAACAATAATAACTTGACAGTGAATCATAGATAATTTA
1 ATAAAACAATAATAACTTAACAGTGAATCATAGATAATTTA
530364 GTGATAAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
43 35 0.97
44 1 0.03
ACGTcount: A:0.49, C:0.08, G:0.10, T:0.33
Consensus pattern (43 bp):
ATAAAACAATAATAACTTAACAGTGAATCATAGATAATTTAAT
Found at i:530405 original size:22 final size:21
Alignment explanation
Indices: 530380--530456 Score: 59
Period size: 22 Copynumber: 3.5 Consensus size: 21
530370 AATTTATTGA
530380 TAAATAATTAAAAATTAAATAG
1 TAAATAATTAAAAA-TAAATAG
* * *
530402 TAAATCAATGATAACAT-AATAA
1 TAAAT-AATTA-AAAATAAATAG
530424 TAAAT-ATATAAAAATATAATAG
1 TAAATAAT-TAAAAATA-AATAG
*
530446 TAAATCATTAA
1 TAAATAATTAA
530457 TAATTTAGTA
Statistics
Matches: 43, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
20 6 0.14
21 1 0.02
22 26 0.60
23 7 0.16
24 3 0.07
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.31
Consensus pattern (21 bp):
TAAATAATTAAAAATAAATAG
Found at i:530469 original size:44 final size:44
Alignment explanation
Indices: 530370--530472 Score: 111
Period size: 44 Copynumber: 2.3 Consensus size: 44
530360 TTTAGTGATA
* * *
530370 AATTTATTGATAAATAATTAAAAATTAAATAGTAAATCAATGAT
1 AATTTAATAATAAATAATTAAAAATTAAATAGTAAATCAATAAT
** *
530414 AACATAATAATAAAT-ATATAAAAA-TATAATAGTAAATCATTAAT
1 AATTTAATAATAAATAAT-TAAAAATTA-AATAGTAAATCAATAAT
*
530458 AATTTAGTAATAAAT
1 AATTTAATAATAAAT
530473 TGATACTTAG
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
43 4 0.08
44 44 0.92
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (44 bp):
AATTTAATAATAAATAATTAAAAATTAAATAGTAAATCAATAAT
Found at i:530712 original size:22 final size:22
Alignment explanation
Indices: 530686--530727 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
530676 TAAACTTATC
530686 AGCAAATCT-TTCATAAATTAAT
1 AGCAAAT-TATTCATAAATTAAT
530708 AGCAAATTATTCATAAATTA
1 AGCAAATTATTCATAAATTA
530728 GTAGTGCATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 1 0.05
22 18 0.95
ACGTcount: A:0.48, C:0.12, G:0.05, T:0.36
Consensus pattern (22 bp):
AGCAAATTATTCATAAATTAAT
Found at i:531160 original size:22 final size:22
Alignment explanation
Indices: 531084--531353 Score: 95
Period size: 22 Copynumber: 12.3 Consensus size: 22
531074 AGTTAATAAT
* * *
531084 TGATAACTTAATAAG-AAATTAA
1 TGATAATTTAAT-AGTAAATCAG
*
531106 TGATAATTTAATAGTAAATTAG
1 TGATAATTTAATAGTAAATCAG
*
531128 TGATAACTTAATAGTAAATCAG
1 TGATAATTTAATAGTAAATCAG
** * * *
531150 TTTTAATTTAATAGTAATTAAT
1 TGATAATTTAATAGTAAATCAG
* * *
531172 TGATAAATTTAGTATTGAATCA-
1 TGAT-AATTTAATAGTAAATCAG
* * * * *
531194 TAATAACTTAATAATATATCAA
1 TGATAATTTAATAGTAAATCAG
* * * *
531216 TGATAATTTTATAATTAATCAT
1 TGATAATTTAATAGTAAATCAG
* * *
531238 TGAAAACTTGAA-AGTAAATCAA
1 TGATAA-TTTAATAGTAAATCAG
* *
531260 T-ATAACTTAGTAGTAGTTAATCA-
1 TGATAA-TT--TAATAGTAAATCAG
* * * * *
531283 TAATAACTTAATAGTTAATAAA
1 TGATAATTTAATAGTAAATCAG
* *
531305 TGATAACTTGATAGTAAATCA-
1 TGATAATTTAATAGTAAATCAG
* * *
531326 TGGGTAATTTAATA-TAAATTAA
1 T-GATAATTTAATAGTAAATCAG
531348 TGATAA
1 TGATAA
531354 CGTATAATGA
Statistics
Matches: 186, Mismatches: 51, Indels: 23
0.72 0.20 0.09
Matches are distributed among these distances:
21 42 0.23
22 114 0.61
23 18 0.10
24 12 0.06
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.38
Consensus pattern (22 bp):
TGATAATTTAATAGTAAATCAG
Found at i:531176 original size:44 final size:45
Alignment explanation
Indices: 531080--531177 Score: 121
Period size: 44 Copynumber: 2.2 Consensus size: 45
531070 TATTAGTTAA
*
531080 TAATTGATAACTTAATAAGAAATTAATGATAATTTAATAGTAAAT
1 TAATTGATAACTTAATAAGAAATCAATGATAATTTAATAGTAAAT
* * **
531125 T-AGTGATAACTTAAT-AGTAAATCAGTTTTAATTTAATAGT-AAT
1 TAATTGATAACTTAATAAG-AAATCAATGATAATTTAATAGTAAAT
531168 TAATTGATAA
1 TAATTGATAA
531178 ATTTAGTATT
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
43 6 0.13
44 38 0.84
45 1 0.02
ACGTcount: A:0.47, C:0.03, G:0.10, T:0.40
Consensus pattern (45 bp):
TAATTGATAACTTAATAAGAAATCAATGATAATTTAATAGTAAAT
Found at i:531205 original size:44 final size:42
Alignment explanation
Indices: 531157--531310 Score: 127
Period size: 44 Copynumber: 3.5 Consensus size: 42
531147 CAGTTTTAAT
*
531157 TTAATAGTAATTAATTGATAAATTTAGTATTGAATCATAATAAC
1 TTAATAGTAATCAA-TGATAAATTTAGTATT-AATCATAATAAC
* *
531201 TTAATAATATATCAATGATAATTTTA-TAATTAATCATTGAA-AAC
1 TTAATAGTA-ATCAATGATAAATTTAGT-ATTAATCA-T-AATAAC
*
531245 TTGAA-AGTAAATCAAT-ATAACTTAGTAGTAGTTAATCATAATAAC
1 TT-AATAGT-AATCAATGATAAATT--TAGTA-TTAATCATAATAAC
*
531290 TTAATAGTTAATAAATGATAA
1 TTAATAG-TAATCAATGATAA
531311 CTTGATAGTA
Statistics
Matches: 90, Mismatches: 6, Indels: 26
0.74 0.05 0.21
Matches are distributed among these distances:
43 12 0.13
44 39 0.43
45 26 0.29
46 13 0.14
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.38
Consensus pattern (42 bp):
TTAATAGTAATCAATGATAAATTTAGTATTAATCATAATAAC
Found at i:531354 original size:89 final size:88
Alignment explanation
Indices: 531108--531354 Score: 211
Period size: 89 Copynumber: 2.8 Consensus size: 88
531098 GAAATTAATG
* * * * **
531108 ATAATTTAATAGTAAATTAGTGATAACTTAATAGTAAATCA-GTTTTAATTTAATAGT-AATTAA
1 ATAACTTAATAGTTAATAAATGATAACTTAATAGTAAATCATG-GATAATTTAATAGTAAATTAA
*
531171 TTGATAAATTTAGTATTGAATCATA
65 -TGATAACTTTAGTATTGAATCATA
* * * * * * * * * *
531196 ATAACTTAATA-ATATATCAATGATAATTTTATAATTAATCATTGAAAACTTGAA-AGTAAATCA
1 ATAACTTAATAGTTA-ATAAATGATAACTTAATAGTAAATCATGGATAA-TTTAATAGTAAATTA
531259 AT-ATAACTTAGTAGTAGTT-AATCATA
64 ATGATAACTT--TAGTA-TTGAATCATA
* *
531285 ATAACTTAATAGTTAATAAATGATAACTTGATAGTAAATCATGGGTAATTTAATA-TAAATTAAT
1 ATAACTTAATAGTTAATAAATGATAACTTAATAGTAAATCATGGATAATTTAATAGTAAATTAAT
531349 GATAAC
66 GATAAC
531355 GTATAATGAA
Statistics
Matches: 122, Mismatches: 27, Indels: 19
0.73 0.16 0.11
Matches are distributed among these distances:
87 7 0.06
88 48 0.39
89 63 0.52
90 4 0.03
ACGTcount: A:0.46, C:0.06, G:0.10, T:0.38
Consensus pattern (88 bp):
ATAACTTAATAGTTAATAAATGATAACTTAATAGTAAATCATGGATAATTTAATAGTAAATTAAT
GATAACTTTAGTATTGAATCATA
Found at i:531618 original size:22 final size:21
Alignment explanation
Indices: 531544--531664 Score: 84
Period size: 22 Copynumber: 5.5 Consensus size: 21
531534 TGATAATTTT
531544 GTAGTAAATAATCAATATA-TTA
1 GTAGTAAATAATC-ATA-ACTTA
* * *
531566 ATAGTAAATTAGTTATAACTTTA
1 GTAGTAAA-TAATCATAAC-TTA
**
531589 -TAACAAATAATCAGTAACTTA
1 GTAGTAAATAATCA-TAACTTA
* * *
531610 GTAGTAAATTATCAACAATTTA
1 GTAGTAAATAATC-ATAACTTA
*
531632 ATAGTAAATTAATCATAACTTA
1 GTAGTAAA-TAATCATAACTTA
531654 GTAGTAAATAA
1 GTAGTAAATAA
531665 ATGCTAATTT
Statistics
Matches: 75, Mismatches: 17, Indels: 15
0.70 0.16 0.14
Matches are distributed among these distances:
21 11 0.15
22 53 0.71
23 11 0.15
ACGTcount: A:0.49, C:0.07, G:0.08, T:0.36
Consensus pattern (21 bp):
GTAGTAAATAATCATAACTTA
Found at i:531680 original size:22 final size:22
Alignment explanation
Indices: 531536--531769 Score: 77
Period size: 22 Copynumber: 10.5 Consensus size: 22
531526 TTAATTATTG
**
531536 ATAATTTTGTAGTAAAT-AATC
1 ATAATTTAATAGTAAATAAATC
* * *
531557 A-ATATATTAATAGTAAATTAGTT
1 ATA-AT-TTAATAGTAAATAAATC
**
531580 ATAACTTT-ATAACAAAT-AATC
1 ATAA-TTTAATAGTAAATAAATC
* * *
531601 AGTAACTTAGTAGTAAAT-TATC
1 A-TAATTTAATAGTAAATAAATC
* *
531623 AACAATTTAATAGTAAATTAATC
1 -ATAATTTAATAGTAAATAAATC
* *
531646 ATAACTTAGTAGTAAATAAATGC
1 ATAATTTAATAGTAAATAAAT-C
*
531669 -TAATTTAATAGTAAGTATATAATTG
1 ATAATTTAATAGTAA--ATA-AA-TC
* * * * *
531694 ATAATTTAGTAGTATATCATTA
1 ATAATTTAATAGTAAATAAATC
* * * *
531716 ATAGTTTAATAGTAAATCATTG
1 ATAATTTAATAGTAAATAAATC
** *
531738 ATAACATAATAGTAAA-ATAATG
1 ATAATTTAATAGTAAATA-AATC
531760 ATAATTTAAT
1 ATAATTTAAT
531770 TATCAATCAT
Statistics
Matches: 157, Mismatches: 40, Indels: 31
0.69 0.18 0.14
Matches are distributed among these distances:
20 1 0.01
21 8 0.05
22 114 0.73
23 12 0.08
24 7 0.04
25 2 0.01
26 13 0.08
ACGTcount: A:0.47, C:0.06, G:0.09, T:0.38
Consensus pattern (22 bp):
ATAATTTAATAGTAAATAAATC
Found at i:531685 original size:26 final size:26
Alignment explanation
Indices: 531652--531707 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
531642 AATCATAACT
*
531652 TAGT-AGTAAATAAATGCTAATTTAA
1 TAGTAAGTAAATAAATGATAATTTAA
* * *
531677 TAGTAAGTATATAATTGATAATTTAG
1 TAGTAAGTAAATAAATGATAATTTAA
531703 TAGTA
1 TAGTA
531708 TATCATTAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 4 0.15
26 22 0.85
ACGTcount: A:0.45, C:0.02, G:0.14, T:0.39
Consensus pattern (26 bp):
TAGTAAGTAAATAAATGATAATTTAA
Found at i:532095 original size:22 final size:22
Alignment explanation
Indices: 532070--532129 Score: 79
Period size: 22 Copynumber: 2.8 Consensus size: 22
532060 ATAAGTTATT
532070 AAAAGATTACTAAAATTATATC
1 AAAAGATTACTAAAATTATATC
*
532092 AAAATG-TTACTAAAATTTTATC
1 AAAA-GATTACTAAAATTATATC
*
532114 AAAA-ATTACCAAAATT
1 AAAAGATTACTAAAATT
532130 GTATTAATGG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
21 10 0.29
22 23 0.68
23 1 0.03
ACGTcount: A:0.53, C:0.10, G:0.03, T:0.33
Consensus pattern (22 bp):
AAAAGATTACTAAAATTATATC
Found at i:532201 original size:21 final size:20
Alignment explanation
Indices: 532081--532202 Score: 93
Period size: 21 Copynumber: 5.8 Consensus size: 20
532071 AAAGATTACT
*
532081 AAAATTATATCAAAATGTTA-C
1 AAAATTGTAT-AAAA-GTTATC
* * *
532102 TAAAATTTTATCAAAAATTACC
1 -AAAATTGTAT-AAAAGTTATC
** *
532124 AAAATTGTATTAATGGTTGTC
1 AAAATTGTA-TAAAAGTTATC
*
532145 AAAATTGTATTAAAGTTATC
1 AAAATTGTATAAAAGTTATC
532165 AAAATTGTATAGAAAGTTATC
1 AAAATTGTATA-AAAGTTATC
*
532186 AAAATTTTATGAAAAGT
1 AAAATTGTAT-AAAAGT
532203 CATTAAAATC
Statistics
Matches: 82, Mismatches: 14, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
20 17 0.21
21 48 0.59
22 17 0.21
ACGTcount: A:0.47, C:0.07, G:0.10, T:0.37
Consensus pattern (20 bp):
AAAATTGTATAAAAGTTATC
Found at i:541719 original size:45 final size:45
Alignment explanation
Indices: 541632--541719 Score: 113
Period size: 45 Copynumber: 2.0 Consensus size: 45
541622 TGACGTGAAC
* ** *
541632 TCTTATATCTCATAATCAATTTTAATATACAGCCTATGTGAGAAT
1 TCTTATATCTCATAATCAATTTTAATATACAACAGATATGAGAAT
* * *
541677 TCTTATATTTCATAATCAATTTTAGTATACAATAGATATGAGA
1 TCTTATATCTCATAATCAATTTTAATATACAACAGATATGAGA
541720 TTCATGGTTT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.41
Consensus pattern (45 bp):
TCTTATATCTCATAATCAATTTTAATATACAACAGATATGAGAAT
Found at i:542087 original size:42 final size:42
Alignment explanation
Indices: 542024--542110 Score: 156
Period size: 42 Copynumber: 2.1 Consensus size: 42
542014 ATCCCATGAA
*
542024 TAATTCTAATATACAATCAATATAAGATTTCCGACTCATCCC
1 TAATTCTAATATACAAGCAATATAAGATTTCCGACTCATCCC
*
542066 TAATTCTAATATACAAGCAATATAAGATTTCCGACTCATCTC
1 TAATTCTAATATACAAGCAATATAAGATTTCCGACTCATCCC
542108 TAA
1 TAA
542111 CACTGACAGA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.39, C:0.22, G:0.06, T:0.33
Consensus pattern (42 bp):
TAATTCTAATATACAAGCAATATAAGATTTCCGACTCATCCC
Found at i:544060 original size:4 final size:4
Alignment explanation
Indices: 544051--544079 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
544041 TAATGCTGAT
544051 CATC CATC CATC CATC CATC CATC CATC C
1 CATC CATC CATC CATC CATC CATC CATC C
544080 CTTGGTGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.52, G:0.00, T:0.24
Consensus pattern (4 bp):
CATC
Found at i:565900 original size:34 final size:34
Alignment explanation
Indices: 565836--565900 Score: 78
Period size: 34 Copynumber: 1.9 Consensus size: 34
565826 TTTAAAATTA
* *
565836 TTTAATAATCAATATTATTGTTTTGCAAATAATC
1 TTTAACAATCAATATTATTGTTTTACAAATAATC
* *
565870 TTTAACAA-CAATATTTTTGTTGTTATAAATA
1 TTTAACAATCAATATTATTGTT-TTACAAATA
565901 GTAAACAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
33 12 0.46
34 14 0.54
ACGTcount: A:0.38, C:0.08, G:0.06, T:0.48
Consensus pattern (34 bp):
TTTAACAATCAATATTATTGTTTTACAAATAATC
Found at i:568857 original size:2 final size:2
Alignment explanation
Indices: 568852--568877 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
568842 TTTTGTTCCT
568852 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
568878 GTAGAGATCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:569633 original size:35 final size:35
Alignment explanation
Indices: 569588--569659 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
569578 AATTGTGATC
569588 GCTACAACGTCATTTTGTGGAAGTGGTTGACGGTA
1 GCTACAACGTCATTTTGTGGAAGTGGTTGACGGTA
*
569623 GCTACAACGTCATTTTGTGGAAGTTGTTGACGGTA
1 GCTACAACGTCATTTTGTGGAAGTGGTTGACGGTA
569658 GC
1 GC
569660 AGGTGGACCT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.22, C:0.15, G:0.31, T:0.32
Consensus pattern (35 bp):
GCTACAACGTCATTTTGTGGAAGTGGTTGACGGTA
Found at i:573922 original size:14 final size:14
Alignment explanation
Indices: 573903--573930 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
573893 TTGATCTTGT
573903 GGGTTATTTTGGAC
1 GGGTTATTTTGGAC
573917 GGGTTATTTTGGAC
1 GGGTTATTTTGGAC
573931 CTTCTTCAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.36, T:0.43
Consensus pattern (14 bp):
GGGTTATTTTGGAC
Found at i:578156 original size:2 final size:2
Alignment explanation
Indices: 578149--578184 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
578139 TCAATTTTAT
*
578149 TA TA TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
578185 AGCACCAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:579943 original size:2 final size:2
Alignment explanation
Indices: 579936--579973 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
579926 ATCTAGAGGC
579936 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
579974 ACCTTATTAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:590058 original size:2 final size:2
Alignment explanation
Indices: 590047--590086 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
590037 AATTTTCCAT
* *
590047 TA TA TA -A TA TA TA AA TA TA TA TA TA TA TA TA CA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
590087 CTCCTCATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
TA
Found at i:594707 original size:9 final size:9
Alignment explanation
Indices: 594693--594722 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
594683 TTTGAAAACT
594693 AAATTAATC
1 AAATTAATC
*
594702 AAATTAATT
1 AAATTAATC
594711 AAATTAATC
1 AAATTAATC
594720 AAA
1 AAA
594723 ATTTTAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (9 bp):
AAATTAATC
Found at i:597279 original size:17 final size:17
Alignment explanation
Indices: 597235--597273 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
597225 TTGTCTATTA
* *
597235 AGAATCATTTTCCTTTT
1 AGAATCATTATACTTTT
597252 AGAATCATTATACTTTT
1 AGAATCATTATACTTTT
597269 AGAAT
1 AGAAT
597274 TCTTATTCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (17 bp):
AGAATCATTATACTTTT
Found at i:597524 original size:256 final size:258
Alignment explanation
Indices: 597059--597559 Score: 714
Period size: 256 Copynumber: 1.9 Consensus size: 258
597049 GAACCCTTTA
597059 AATCTCTTTTAGTCAGCTCTCAAACATTCAAACATACACACACATCATAAGACGTAAATTTCTAG
1 AATCTCTTTTAGTCAGCTCTCAAACATTCAAACATACACACACA-CATAAGACGTAAATTTCTAG
* * * * *
597124 AACTCTTATGGATGTCTATATCACAAAATCCTATAACTCTTTTAAATCTTTTTTGTATACCTAAT
65 AACTCCTATGGATATCTATATCACAAAATCCTACAACTATTTTAAATCTTTTTTGTATACCTAAC
* * *
597189 TTTATAGAGACTTCACTTATTTGTAACTATACAAATTTGTCTATTAAGAATCATTTTCCTTTTAG
130 CTTATAGAGACTTCACTTATTTATAACTATACAAATTTGTCTATTAAGAATCATTTTCCTTTTAA
597254 AATCATTATACTTTTAGAATTCTTATTCTAAAAGTCTTATTGTCCATCAAACAGTCAAACATTC
195 AATCATTATACTTTTAGAATTCTTATTCTAAAAGTCTTATTGTCCATCAAACAGTCAAACATTC
*
597318 AATCTTTTTTAGTCCA-CTCTCAAACATTCAAACATACACAC-C-CATAAGACGTAAATCTTC-A
1 AATCTCTTTTAGT-CAGCTCTCAAACATTCAAACATACACACACACATAAGACGTAAAT-TTCTA
* *
597379 GTACTCCTATGGATATCTAT-TCCACAAAATCCTACAACTATTTTACATCTTTTTT-TCATACCT
64 GAACTCCTATGGATATCTATAT-CACAAAATCCTACAACTATTTTAAATCTTTTTTGT-ATACCT
* * *
597442 AACCTTATAGATACTTTA-TCTATTTATAACTATATAAATTTGTCTATTAAGAATCCA-TTTCCT
127 AACCTTATAGAGACTTCACT-TATTTATAACTATACAAATTTGTCTATTAAGAAT-CATTTTCCT
* * *
597505 TTTAAAATTC-TTCTACTTTTAGAATTTTTATTCTAAAAGTCTTCTTGTCCATCAA
190 TTTAAAA-TCATTATACTTTTAGAATTCTTATTCTAAAAGTCTTATTGTCCATCAA
597560 GTAATCTCTA
Statistics
Matches: 218, Mismatches: 17, Indels: 17
0.87 0.07 0.07
Matches are distributed among these distances:
255 3 0.01
256 168 0.77
257 7 0.03
258 1 0.00
259 37 0.17
260 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.06, T:0.40
Consensus pattern (258 bp):
AATCTCTTTTAGTCAGCTCTCAAACATTCAAACATACACACACACATAAGACGTAAATTTCTAGA
ACTCCTATGGATATCTATATCACAAAATCCTACAACTATTTTAAATCTTTTTTGTATACCTAACC
TTATAGAGACTTCACTTATTTATAACTATACAAATTTGTCTATTAAGAATCATTTTCCTTTTAAA
ATCATTATACTTTTAGAATTCTTATTCTAAAAGTCTTATTGTCCATCAAACAGTCAAACATTC
Found at i:597578 original size:11 final size:11
Alignment explanation
Indices: 597562--597600 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
597552 TCCATCAAGT
* *
597562 AATCTCTAATA
1 AATCTCAAACA
597573 AATCTCAAACA
1 AATCTCAAACA
597584 AATCTCAAACA
1 AATCTCAAACA
597595 AATCTC
1 AATCTC
597601 TTATGGGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (11 bp):
AATCTCAAACA
Found at i:597876 original size:30 final size:31
Alignment explanation
Indices: 597842--597908 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 31
597832 CCACATTCTA
*
597842 ATACCATTTATTAGGGATTACCACAGCT-TG
1 ATACCATTTATTAGAGATTACCACAGCTCTG
* * *
597872 ATACCATTTGTTAGATATTACCATAGCTCTG
1 ATACCATTTATTAGAGATTACCACAGCTCTG
597903 ATACCA
1 ATACCA
597909 CTTGATGAGC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 24 0.75
31 8 0.25
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.34
Consensus pattern (31 bp):
ATACCATTTATTAGAGATTACCACAGCTCTG
Found at i:600311 original size:15 final size:15
Alignment explanation
Indices: 600280--600317 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
600270 AATTACTTAA
600280 ATTAAATATTAAAAT
1 ATTAAATATTAAAAT
*
600295 ATTTAAAT-TTAACAT
1 A-TTAAATATTAAAAT
600310 ATTAAATA
1 ATTAAATA
600318 AATTAAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
14 6 0.30
15 8 0.40
16 6 0.30
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (15 bp):
ATTAAATATTAAAAT
Found at i:600332 original size:32 final size:30
Alignment explanation
Indices: 600280--600339 Score: 84
Period size: 32 Copynumber: 1.9 Consensus size: 30
600270 AATTACTTAA
600280 ATTAAATATTAAAATATTTAAATTTAACAT
1 ATTAAATATTAAAATATTTAAATTTAACAT
* *
600310 ATTAAATAAATTAAATTTTTTAAATTTAAC
1 ATTAAAT--ATTAAAATATTTAAATTTAAC
600340 TCGATAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 7 0.27
32 19 0.73
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (30 bp):
ATTAAATATTAAAATATTTAAATTTAACAT
Found at i:600769 original size:22 final size:23
Alignment explanation
Indices: 600734--600781 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
600724 TAAATGAAAC
600734 TAAAATGTAAAAAAT-TTTCTTA
1 TAAAATGTAAAAAATCTTTCTTA
600756 TAAAAT-TAAAAAAATCGTTTCTTA
1 TAAAATGT-AAAAAATC-TTTCTTA
600780 TA
1 TA
600782 TAAAAAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 1 0.04
22 13 0.57
24 9 0.39
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (23 bp):
TAAAATGTAAAAAATCTTTCTTA
Found at i:600820 original size:11 final size:11
Alignment explanation
Indices: 600804--600828 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
600794 TTAATTCTAT
600804 AAATAAAATTA
1 AAATAAAATTA
600815 AAATAAAATTA
1 AAATAAAATTA
600826 AAA
1 AAA
600829 AATGTTCGCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (11 bp):
AAATAAAATTA
Found at i:601316 original size:12 final size:12
Alignment explanation
Indices: 601274--601317 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
601264 ATGATATGTT
601274 TTTTTAAATAAATA
1 TTTTT-AATAAA-A
601288 TTTTTAATAAAA
1 TTTTTAATAAAA
* *
601300 ATTTTGATAAAA
1 TTTTTAATAAAA
601312 TTTTTA
1 TTTTTA
601318 TCATTAAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
12 15 0.58
13 6 0.23
14 5 0.19
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (12 bp):
TTTTTAATAAAA
Found at i:601471 original size:12 final size:12
Alignment explanation
Indices: 601431--601474 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
601421 ATTATTTTTA
601431 ATAAAATTT-TT
1 ATAAAATTTCTT
601442 ATAAAATTTACTT
1 ATAAAATTT-CTT
*
601455 A-AAAATTTCAT
1 ATAAAATTTCTT
601466 ATAAAATTT
1 ATAAAATTT
601475 TCCACAAGCC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
11 12 0.41
12 14 0.48
13 3 0.10
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (12 bp):
ATAAAATTTCTT
Found at i:607071 original size:114 final size:114
Alignment explanation
Indices: 606871--607102 Score: 437
Period size: 114 Copynumber: 2.0 Consensus size: 114
606861 TCATTACTCG
606871 AGAGTATAATTTCCATATTTAATAACATTCCAGTACTAATTTTACCTATGTTTTTCAGCTAATAT
1 AGAGTATAATTTCCATATTTAATAACATTCCAGTACTAATTTTACCTATGTTTTTCAGCTAATAT
* *
606936 TGGCAACAATTTCAGATGCTTTGCATGATAAATCACCCAGCATTGTGAC
66 TAGCAACAATTCCAGATGCTTTGCATGATAAATCACCCAGCATTGTGAC
*
606985 AGAGTATAATTTTCATATTTAATAACATTCCAGTACTAATTTTACCTATGTTTTTCAGCTAATAT
1 AGAGTATAATTTCCATATTTAATAACATTCCAGTACTAATTTTACCTATGTTTTTCAGCTAATAT
607050 TAGCAACAATTCCAGATGCTTTGCATGATAAATCACCCAGCATTGTGAC
66 TAGCAACAATTCCAGATGCTTTGCATGATAAATCACCCAGCATTGTGAC
607099 AGAG
1 AGAG
607103 GAAAACATTA
Statistics
Matches: 115, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
114 115 1.00
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.36
Consensus pattern (114 bp):
AGAGTATAATTTCCATATTTAATAACATTCCAGTACTAATTTTACCTATGTTTTTCAGCTAATAT
TAGCAACAATTCCAGATGCTTTGCATGATAAATCACCCAGCATTGTGAC
Found at i:607280 original size:16 final size:17
Alignment explanation
Indices: 607250--607284 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
607240 AAGGTCTTAC
607250 TTAAGCACTTTTTTTTT
1 TTAAGCACTTTTTTTTT
607267 TTAAGCACTTTTTTTTT
1 TTAAGCACTTTTTTTTT
607284 T
1 T
607285 GTACTTAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.17, C:0.11, G:0.06, T:0.66
Consensus pattern (17 bp):
TTAAGCACTTTTTTTTT
Found at i:609441 original size:63 final size:63
Alignment explanation
Indices: 609342--609474 Score: 248
Period size: 63 Copynumber: 2.1 Consensus size: 63
609332 GATACTTGAC
*
609342 ATATTTAACTTCACAAGGTTATAGCAAACACTCATAAATGCACTTTCACTTTAACAACTTTTG
1 ATATTTAACCTCACAAGGTTATAGCAAACACTCATAAATGCACTTTCACTTTAACAACTTTTG
609405 ATATTTAACCTCACAAGGTTATAGCAAACACTCATAAATGCACTTTCACTTTAACAACTTTTG
1 ATATTTAACCTCACAAGGTTATAGCAAACACTCATAAATGCACTTTCACTTTAACAACTTTTG
*
609468 ATGTTTA
1 ATATTTA
609475 CCCTTAATTA
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 68 1.00
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.35
Consensus pattern (63 bp):
ATATTTAACCTCACAAGGTTATAGCAAACACTCATAAATGCACTTTCACTTTAACAACTTTTG
Found at i:609533 original size:23 final size:23
Alignment explanation
Indices: 609503--609549 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
609493 TTCAGCAATG
609503 ATAGACTTTCCTAGTTATGTAGT
1 ATAGACTTTCCTAGTTATGTAGT
609526 ATAGACTTTCCTAGTTATGTAGT
1 ATAGACTTTCCTAGTTATGTAGT
609549 A
1 A
609550 GACTAACATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.28, C:0.13, G:0.17, T:0.43
Consensus pattern (23 bp):
ATAGACTTTCCTAGTTATGTAGT
Found at i:611868 original size:23 final size:23
Alignment explanation
Indices: 611842--611886 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
611832 TGAAGTATTT
611842 TACATAACAAAAGGTGTTATGTA
1 TACATAACAAAAGGTGTTATGTA
611865 TACATAACAAAAGGTGTTATGT
1 TACATAACAAAAGGTGTTATGT
611887 GTTATTATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.42, C:0.09, G:0.18, T:0.31
Consensus pattern (23 bp):
TACATAACAAAAGGTGTTATGTA
Found at i:617563 original size:2 final size:2
Alignment explanation
Indices: 617558--617585 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
617548 AACTTTTTTA
617558 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
617586 GTAAACAATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:618790 original size:2 final size:2
Alignment explanation
Indices: 618783--618814 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
618773 GACATGATCA
618783 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
618815 CAGATATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:622120 original size:11 final size:11
Alignment explanation
Indices: 622104--622144 Score: 55
Period size: 11 Copynumber: 3.5 Consensus size: 11
622094 CCCCAATACC
622104 ATTTATATAAT
1 ATTTATATAAT
622115 ATTTATATAAT
1 ATTTATATAAT
*
622126 ATATATATATAT
1 ATTTATATA-AT
622138 AGTTTAT
1 A-TTTAT
622145 TGTTCCTCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
11 19 0.73
12 3 0.12
13 4 0.15
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (11 bp):
ATTTATATAAT
Found at i:626084 original size:22 final size:22
Alignment explanation
Indices: 626056--626100 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
626046 CTTTTATGGT
626056 TCTCAATGGATAAAAAGATTTG
1 TCTCAATGGATAAAAAGATTTG
626078 TCTCAATGGATAAAAAGATTTG
1 TCTCAATGGATAAAAAGATTTG
626100 T
1 T
626101 ATTTTAGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.09, G:0.18, T:0.33
Consensus pattern (22 bp):
TCTCAATGGATAAAAAGATTTG
Found at i:626404 original size:22 final size:22
Alignment explanation
Indices: 626376--626420 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
626366 CTTTTATGGT
626376 TCTCAATGGATAAAAAGATTTG
1 TCTCAATGGATAAAAAGATTTG
626398 TCTCAATGGATAAAAAGATTTG
1 TCTCAATGGATAAAAAGATTTG
626420 T
1 T
626421 ATTTTAGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.09, G:0.18, T:0.33
Consensus pattern (22 bp):
TCTCAATGGATAAAAAGATTTG
Found at i:626508 original size:320 final size:320
Alignment explanation
Indices: 625926--626567 Score: 1284
Period size: 320 Copynumber: 2.0 Consensus size: 320
625916 TTTTACGACT
625926 ATATAATACTGACTTGGTGTTTTTCCCTTTGAATTCTTCCTTCTAGTTTTTTATATTTTATAGCA
1 ATATAATACTGACTTGGTGTTTTTCCCTTTGAATTCTTCCTTCTAGTTTTTTATATTTTATAGCA
625991 ACAAGATGTTGTTTGTTTCTATATATTTCATTTCCTTCTGTTCAATAGGTTTTTCCTTTTATGGT
66 ACAAGATGTTGTTTGTTTCTATATATTTCATTTCCTTCTGTTCAATAGGTTTTTCCTTTTATGGT
626056 TCTCAATGGATAAAAAGATTTGTCTCAATGGATAAAAAGATTTGTATTTTAGTTTGTTTCTTCTT
131 TCTCAATGGATAAAAAGATTTGTCTCAATGGATAAAAAGATTTGTATTTTAGTTTGTTTCTTCTT
626121 TCTTTGATTTGTATTAAAAGAGAGAAAAAGAAAGGGTTGGATTGCAAATATTCAAGTAACTTGTA
196 TCTTTGATTTGTATTAAAAGAGAGAAAAAGAAAGGGTTGGATTGCAAATATTCAAGTAACTTGTA
626186 ATGCAAATTTCATTTGCGACCTCACAACGGCAGTTTGTGCGTTTAGAAATTAAAAATAAA
261 ATGCAAATTTCATTTGCGACCTCACAACGGCAGTTTGTGCGTTTAGAAATTAAAAATAAA
626246 ATATAATACTGACTTGGTGTTTTTCCCTTTGAATTCTTCCTTCTAGTTTTTTATATTTTATAGCA
1 ATATAATACTGACTTGGTGTTTTTCCCTTTGAATTCTTCCTTCTAGTTTTTTATATTTTATAGCA
626311 ACAAGATGTTGTTTGTTTCTATATATTTCATTTCCTTCTGTTCAATAGGTTTTTCCTTTTATGGT
66 ACAAGATGTTGTTTGTTTCTATATATTTCATTTCCTTCTGTTCAATAGGTTTTTCCTTTTATGGT
626376 TCTCAATGGATAAAAAGATTTGTCTCAATGGATAAAAAGATTTGTATTTTAGTTTGTTTCTTCTT
131 TCTCAATGGATAAAAAGATTTGTCTCAATGGATAAAAAGATTTGTATTTTAGTTTGTTTCTTCTT
626441 TCTTTGATTTGTATTAAAAGAGAGAAAAAGAAAGGGTTGGATTGCAAATATTCAAGTAACTTGTA
196 TCTTTGATTTGTATTAAAAGAGAGAAAAAGAAAGGGTTGGATTGCAAATATTCAAGTAACTTGTA
626506 ATGCAAATTTCATTTGCGACCTCACAACGGCAGTTTGTGCGTTTAGAAATTAAAAATAAA
261 ATGCAAATTTCATTTGCGACCTCACAACGGCAGTTTGTGCGTTTAGAAATTAAAAATAAA
626566 AT
1 AT
626568 CTATTATTAG
Statistics
Matches: 322, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
320 322 1.00
ACGTcount: A:0.29, C:0.12, G:0.16, T:0.43
Consensus pattern (320 bp):
ATATAATACTGACTTGGTGTTTTTCCCTTTGAATTCTTCCTTCTAGTTTTTTATATTTTATAGCA
ACAAGATGTTGTTTGTTTCTATATATTTCATTTCCTTCTGTTCAATAGGTTTTTCCTTTTATGGT
TCTCAATGGATAAAAAGATTTGTCTCAATGGATAAAAAGATTTGTATTTTAGTTTGTTTCTTCTT
TCTTTGATTTGTATTAAAAGAGAGAAAAAGAAAGGGTTGGATTGCAAATATTCAAGTAACTTGTA
ATGCAAATTTCATTTGCGACCTCACAACGGCAGTTTGTGCGTTTAGAAATTAAAAATAAA
Found at i:638739 original size:21 final size:22
Alignment explanation
Indices: 638704--638744 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
638694 TGATACTCTC
* *
638704 ATTTTATGAGCTTTTTATTTTT
1 ATTTTATGAGATTTTGATTTTT
638726 ATTTT-TGAGATTTTGATTT
1 ATTTTATGAGATTTTGATTT
638745 CAACAAATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.20, C:0.02, G:0.12, T:0.66
Consensus pattern (22 bp):
ATTTTATGAGATTTTGATTTTT
Found at i:639143 original size:27 final size:27
Alignment explanation
Indices: 639106--639172 Score: 116
Period size: 27 Copynumber: 2.5 Consensus size: 27
639096 TTTTGATTTG
*
639106 AATTTAAATAATTATCCAAATATATTA
1 AATTTAAATAATTATCCAAACATATTA
*
639133 AATTTACATAATTATCCAAACATATTA
1 AATTTAAATAATTATCCAAACATATTA
639160 AATTTAAATAATT
1 AATTTAAATAATT
639173 TATTAAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (27 bp):
AATTTAAATAATTATCCAAACATATTA
Found at i:640010 original size:2 final size:2
Alignment explanation
Indices: 640005--640031 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
639995 AGCCACACAT
640005 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
640032 TTTCTTTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:641449 original size:17 final size:17
Alignment explanation
Indices: 641429--641464 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
641419 GTAAGTTTCC
641429 TGCATAATCATGTTTTA
1 TGCATAATCATGTTTTA
641446 TGCATAATCATGTTTTA
1 TGCATAATCATGTTTTA
641463 TG
1 TG
641465 AATGGTATGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.11, G:0.14, T:0.47
Consensus pattern (17 bp):
TGCATAATCATGTTTTA
Found at i:643520 original size:2 final size:2
Alignment explanation
Indices: 643515--643540 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
643505 TGTGTGTGTG
643515 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
643541 GAGAGAGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:649079 original size:2 final size:2
Alignment explanation
Indices: 649072--649101 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
649062 AAAAACACAT
649072 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
649102 TACCAGAGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:652846 original size:3 final size:3
Alignment explanation
Indices: 652838--652870 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
652828 GATATGGTAA
652838 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
652871 GCTTGATATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:663230 original size:2 final size:2
Alignment explanation
Indices: 663223--663253 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
663213 TTTTAAACAC
663223 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
663254 TAACCAGAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:673717 original size:20 final size:19
Alignment explanation
Indices: 673692--673741 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 19
673682 ACTTAAATTA
673692 ATAAAATATTATTTTAAAAT
1 ATAAAATATT-TTTTAAAAT
673712 ATAAAATTATTTTTTAAAAT
1 ATAAAA-TATTTTTTAAAAT
673732 AT-AAATATTT
1 ATAAAATATTT
673742 AAATATATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
18 5 0.17
19 3 0.10
20 17 0.59
21 4 0.14
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
ATAAAATATTTTTTAAAAT
Found at i:673720 original size:18 final size:18
Alignment explanation
Indices: 673699--673755 Score: 59
Period size: 20 Copynumber: 3.3 Consensus size: 18
673689 TTAATAAAAT
673699 ATTATTTTAAAATATAAA
1 ATTATTTTAAAATATAAA
673717 ATTATTTTTTAAAATAT-AA
1 ATTA--TTTTAAAATATAAA
*
673736 A-TA-TTT-AAATATATA
1 ATTATTTTAAAATATAAA
673751 ATTAT
1 ATTAT
673756 ATAAATATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 11
0.73 0.02 0.24
Matches are distributed among these distances:
14 6 0.18
15 5 0.15
16 2 0.06
18 6 0.18
19 3 0.09
20 11 0.33
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTATTTTAAAATATAAA
Found at i:673746 original size:8 final size:8
Alignment explanation
Indices: 673726--673766 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
673716 AATTATTTTT
673726 TAAA-ATA
1 TAAATATA
*
673733 TAAATATT
1 TAAATATA
673741 TAAATATA
1 TAAATATA
*
673749 TAATTATA
1 TAAATATA
673757 TAAATATA
1 TAAATATA
673765 TA
1 TA
673767 TAAATAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
7 4 0.14
8 25 0.86
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (8 bp):
TAAATATA
Found at i:673757 original size:18 final size:18
Alignment explanation
Indices: 673699--673766 Score: 58
Period size: 16 Copynumber: 4.0 Consensus size: 18
673689 TTAATAAAAT
*
673699 ATTAT-TTTAAAATATAAA
1 ATTATATTT-AAATATATA
*
673717 ATTATTTTTTAAA-ATATA
1 ATTA-TATTTAAATATATA
673735 A--ATATTTAAATATATA
1 ATTATATTTAAATATATA
673751 ATTATA--TAAATATATA
1 ATTATATTTAAATATATA
673767 TAAATAAAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
15 7 0.16
16 17 0.40
18 12 0.28
19 4 0.09
20 3 0.07
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
ATTATATTTAAATATATA
Found at i:673779 original size:26 final size:24
Alignment explanation
Indices: 673730--673780 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 24
673720 ATTTTTTAAA
* *
673730 ATATAAATATTTAAATATATAATT
1 ATATAAATATTTAAATAAAAAATT
673754 ATATAAATATATATAAATAAAAAATT
1 ATATAAATAT-T-TAAATAAAAAATT
673780 A
1 A
673781 AAAAATAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 10 0.43
25 1 0.04
26 12 0.52
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (24 bp):
ATATAAATATTTAAATAAAAAATT
Found at i:680653 original size:18 final size:18
Alignment explanation
Indices: 680632--680676 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
680622 ATCTAATCAT
* *
680632 TTTTATTTATTTTTTTTA
1 TTTTATTTATTATTATTA
*
680650 TTTTAGTTATTATTATTA
1 TTTTATTTATTATTATTA
680668 TTTT-TTTAT
1 TTTTATTTAT
680677 ATATAGCTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (18 bp):
TTTTATTTATTATTATTA
Found at i:680694 original size:27 final size:26
Alignment explanation
Indices: 680642--680694 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
680632 TTTTATTTAT
* * * *
680642 TTTTTTTATTTTAGTTATTATTATTA
1 TTTTTTTATTATAGCTAGTATCATTA
680668 TTTTTTTATATATAGCTAGTATCATTA
1 TTTTTTTAT-TATAGCTAGTATCATTA
680695 CAACTTCTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.26, C:0.04, G:0.06, T:0.64
Consensus pattern (26 bp):
TTTTTTTATTATAGCTAGTATCATTA
Found at i:688668 original size:16 final size:16
Alignment explanation
Indices: 688649--688683 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
688639 TCGCTTATGA
*
688649 TTTTTCCTTTCTTTAC
1 TTTTTCCTCTCTTTAC
*
688665 TTTTTCCTCTCTTTTC
1 TTTTTCCTCTCTTTAC
688681 TTT
1 TTT
688684 ATTCATATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.03, C:0.26, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTTCCTCTCTTTAC
Found at i:694639 original size:12 final size:12
Alignment explanation
Indices: 694609--694648 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
694599 CTCTAATCTT
* *
694609 TAAATAAATAAA
1 TAAATATATATA
694621 TAAATATATATA
1 TAAATATATATA
*
694633 TAAATATTTATA
1 TAAATATATATA
694645 TAAA
1 TAAA
694649 ACGAGTAGCG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
TAAATATATATA
Found at i:698605 original size:15 final size:16
Alignment explanation
Indices: 698580--698612 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
698570 AATTAAATTA
698580 AATTATATATATATTT
1 AATTATATATATATTT
*
698596 AATT-TATATATTTTT
1 AATTATATATATATTT
698611 AA
1 AA
698613 ACTTTAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
AATTATATATATATTT
Found at i:698706 original size:26 final size:26
Alignment explanation
Indices: 698658--698708 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
698648 AATTTATTTA
* *
698658 AATATATTAAGATTTTATATTAAAAT
1 AATATATTAAAATTTTAAATTAAAAT
698684 AATATA-TAAAATTTTAAATTTAAAA
1 AATATATTAAAATTTTAAA-TTAAAA
698709 ATTAACAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (26 bp):
AATATATTAAAATTTTAAATTAAAAT
Found at i:698785 original size:11 final size:11
Alignment explanation
Indices: 698739--698789 Score: 59
Period size: 11 Copynumber: 4.7 Consensus size: 11
698729 GAAACTAATA
698739 AAATTTAATTT
1 AAATTTAATTT
*
698750 -AATTCAATTT
1 AAATTTAATTT
* **
698760 AAATTAAATAA
1 AAATTTAATTT
698771 AAATTTAATTT
1 AAATTTAATTT
698782 AAATTTAA
1 AAATTTAA
698790 ATCGATTGAA
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
10 9 0.28
11 23 0.72
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (11 bp):
AAATTTAATTT
Found at i:698830 original size:19 final size:19
Alignment explanation
Indices: 698800--698836 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
698790 ATCGATTGAA
698800 ATTTTAAAATATTATATAAT
1 ATTTTAAAATATTA-ATAAT
698820 ATTTT-AAATATTAATAA
1 ATTTTAAAATATTAATAA
698837 ATTAAAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 8 0.47
20 5 0.29
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTTTAAAATATTAATAAT
Found at i:700872 original size:2 final size:2
Alignment explanation
Indices: 700832--700860 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
700822 CCAAACAGGA
700832 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
700861 CGTGGAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:711940 original size:2 final size:2
Alignment explanation
Indices: 711933--711957 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
711923 AAAGAAGCAA
711933 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
711958 GATTATAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:719158 original size:22 final size:22
Alignment explanation
Indices: 719133--719190 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
719123 GATTAGATAT
* *
719133 ATATTATTTTTTAATTAATTTA
1 ATATTAATATTTAATTAATTTA
* *
719155 ATATTAATATTTATTTAATTTG
1 ATATTAATATTTAATTAATTTA
*
719177 ATATTTATATTTAA
1 ATATTAATATTTAA
719191 AAAATATTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
ATATTAATATTTAATTAATTTA
Found at i:719182 original size:16 final size:17
Alignment explanation
Indices: 719150--719184 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
719140 TTTTTAATTA
719150 ATTTAATATTAATATTT
1 ATTTAATATTAATATTT
*
719167 ATTTAAT-TTGATATTT
1 ATTTAATATTAATATTT
719183 AT
1 AT
719185 ATTTAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (17 bp):
ATTTAATATTAATATTT
Found at i:719234 original size:22 final size:21
Alignment explanation
Indices: 719180--719219 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
719170 TAATTTGATA
*
719180 TTTATATTTAAAAAATATTAT
1 TTTATATTAAAAAAATATTAT
719201 TTTATATTAAAAAAATATT
1 TTTATATTAAAAAAATATT
719220 TTATTAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
TTTATATTAAAAAAATATTAT
Found at i:727149 original size:42 final size:42
Alignment explanation
Indices: 727099--727178 Score: 151
Period size: 42 Copynumber: 1.9 Consensus size: 42
727089 TATAGATACC
*
727099 TCATAAAGCTATGAAAAAACCTTAGATACATATGATACTACT
1 TCATAAAGCTATGAAAAAACCTTAGATACAAATGATACTACT
727141 TCATAAAGCTATGAAAAAACCTTAGATACAAATGATAC
1 TCATAAAGCTATGAAAAAACCTTAGATACAAATGATAC
727179 ACAATCATAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.47, C:0.16, G:0.10, T:0.26
Consensus pattern (42 bp):
TCATAAAGCTATGAAAAAACCTTAGATACAAATGATACTACT
Found at i:727187 original size:42 final size:42
Alignment explanation
Indices: 727099--727188 Score: 146
Period size: 42 Copynumber: 2.1 Consensus size: 42
727089 TATAGATACC
* *
727099 TCATAAAGCTATGAAAAAACCTTAGATACATATGATACTACT
1 TCATAAAGCTATGAAAAAACCTTAGATACAAATGATACTACA
727141 TCATAAAGCTATGAAAAAACCTTAGATACAAATGATAC-ACAA
1 TCATAAAGCTATGAAAAAACCTTAGATACAAATGATACTAC-A
727183 TCATAA
1 TCATAA
727189 CAGCCAAGTG
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
41 2 0.04
42 43 0.96
ACGTcount: A:0.49, C:0.17, G:0.09, T:0.26
Consensus pattern (42 bp):
TCATAAAGCTATGAAAAAACCTTAGATACAAATGATACTACA
Found at i:733545 original size:54 final size:54
Alignment explanation
Indices: 733486--733594 Score: 191
Period size: 54 Copynumber: 2.0 Consensus size: 54
733476 TTGTACAAAT
* *
733486 AAAACACACAGAAAGACATTAAAATATAATTAAGTTAGTAAGAAACTATGGATA
1 AAAACACACACAAAGACATTAAAATATAAGTAAGTTAGTAAGAAACTATGGATA
*
733540 AAAACACACACAAAGATATTAAAATATAAGTAAGTTAGTAAGAAACTATGGATA
1 AAAACACACACAAAGACATTAAAATATAAGTAAGTTAGTAAGAAACTATGGATA
733594 A
1 A
733595 TTTGGGAACG
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.56, C:0.09, G:0.13, T:0.22
Consensus pattern (54 bp):
AAAACACACACAAAGACATTAAAATATAAGTAAGTTAGTAAGAAACTATGGATA
Found at i:737274 original size:24 final size:25
Alignment explanation
Indices: 737241--737289 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
737231 ACCTAAAGAT
*
737241 TTTTTAAAAAAT-TTATGATTTGAAA
1 TTTTTAAAAAATCTTATCA-TTGAAA
737266 TTTTT-AAAAATCTTATCATTGAAA
1 TTTTTAAAAAATCTTATCATTGAAA
737290 AATTGTCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 12 0.55
25 10 0.45
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.47
Consensus pattern (25 bp):
TTTTTAAAAAATCTTATCATTGAAA
Found at i:737428 original size:173 final size:172
Alignment explanation
Indices: 737176--737638 Score: 612
Period size: 173 Copynumber: 2.7 Consensus size: 172
737166 ATAATTATTT
* * * * *
737176 TTGAAGTTTCATTTAAATCA-TTCTACTATTTGAGACAAATTTAAAGAAATTTTTCACCTAAAGA
1 TTGAAATTTCATTTAAATTATTTC-ACAATTTGATACAAATTTAAAGAAATTTCTCACCTAAA-A
* *
737240 TTTTTTAAAAAATTTATGATTTGAAATTTTTAAAAATCTTATCATTGAAAAATTGTCAAATATTT
64 TTTCTTAAAAAATTTATCATTTGAAATTTTTAAAAATCTTATCATTGAAAAATTGTCAAATATTT
* *
737305 TCAACCTAAAATTTTTTATTTGAAAAATGATACA-ATTACTTTTA
129 TCAACCTAAAATTTTTTATTAGAAAAATCATACATA-TACTTTTA
*
737349 TTGAAATTTCATTTAAATTATTTCACAATTTGATACAAATTTAAAAAAATTTCTCACCTACAAAT
1 TTGAAATTTCATTTAAATTATTTCACAATTTGATACAAATTTAAAGAAATTTCTCACCTA-AAAT
* * * * *
737414 TTCTTAAGAAATTTATTATTTGAAATTTCTAAAAATCTTATCATTGAATAATTGTTAAATATTTT
65 TTCTTAAAAAATTTATCATTTGAAATTTTTAAAAATCTTATCATTGAAAAATTGTCAAATATTTT
* *
737479 CAATCTAAAATTTTTTATTAGAAAAATCATACATATATTTTTA
130 CAACCTAAAATTTTTTATTAGAAAAATCATACATATACTTTTA
* * * *
737522 TTGAAATTTCATTTAAATTATTCCACAATTT-ATGACAAATTTAGAGAAATTTCTCACTTAGAGA
1 TTGAAATTTCATTTAAATTATTTCACAATTTGAT-ACAAATTTAAAGAAATTTCTCACCTA-AAA
* * *
737586 -TTCTTAAAAAATTTATCATTTAAAATTTTTAAGAATCTCATCATT-AAATAATT
64 TTTCTTAAAAAATTTATCATTTGAAATTTTTAAAAATCTTATCATTGAAA-AATT
737639 AATATTTAAT
Statistics
Matches: 256, Mismatches: 29, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
171 2 0.01
172 45 0.18
173 203 0.79
174 6 0.02
ACGTcount: A:0.41, C:0.10, G:0.06, T:0.43
Consensus pattern (172 bp):
TTGAAATTTCATTTAAATTATTTCACAATTTGATACAAATTTAAAGAAATTTCTCACCTAAAATT
TCTTAAAAAATTTATCATTTGAAATTTTTAAAAATCTTATCATTGAAAAATTGTCAAATATTTTC
AACCTAAAATTTTTTATTAGAAAAATCATACATATACTTTTA
Found at i:737798 original size:26 final size:24
Alignment explanation
Indices: 737768--737827 Score: 66
Period size: 26 Copynumber: 2.4 Consensus size: 24
737758 ACAAATTTAG
737768 AAAAAATTTCTCACCTAAAAATTTT
1 AAAAAATTTCTCA-CTAAAAATTTT
* * **
737793 ATAAAAATTTATCATTTGAAATTTT
1 A-AAAAATTTCTCACTAAAAATTTT
737818 AAAAAATTTC
1 AAAAAATTTC
737828 ATCATTTGAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
24 8 0.28
25 10 0.34
26 11 0.38
ACGTcount: A:0.48, C:0.10, G:0.02, T:0.40
Consensus pattern (24 bp):
AAAAAATTTCTCACTAAAAATTTT
Found at i:737814 original size:25 final size:26
Alignment explanation
Indices: 737786--737846 Score: 90
Period size: 25 Copynumber: 2.3 Consensus size: 26
737776 TCTCACCTAA
737786 AAATTTTATAAAAATTT-ATCATTTG
1 AAATTTTATAAAAATTTCATCATTTG
737811 AAATTTTA-AAAAATTTCATCATTTG
1 AAATTTTATAAAAATTTCATCATTTG
737836 ATAATTATTAT
1 A-AATT-TTAT
737847 TTATTCTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
24 8 0.25
25 17 0.53
26 4 0.12
27 3 0.09
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.48
Consensus pattern (26 bp):
AAATTTTATAAAAATTTCATCATTTG
Found at i:738934 original size:11 final size:11
Alignment explanation
Indices: 738915--738983 Score: 63
Period size: 11 Copynumber: 6.3 Consensus size: 11
738905 TAAAACCCAA
*
738915 AATAAATAAAT
1 AATATATAAAT
738926 AATATATAAAT
1 AATATATAAAT
738937 AATATATAAAT
1 AATATATAAAT
738948 AA-AGTAT-AA-
1 AATA-TATAAAT
*
738957 AATATAAAATAT
1 AATATATAA-AT
*
738969 AAAATATAAAAT
1 AATATAT-AAAT
738981 AAT
1 AAT
738984 GAGTAATTGG
Statistics
Matches: 47, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
9 4 0.09
10 5 0.11
11 27 0.57
12 9 0.19
13 2 0.04
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.30
Consensus pattern (11 bp):
AATATATAAAT
Found at i:738956 original size:7 final size:7
Alignment explanation
Indices: 738937--738981 Score: 65
Period size: 7 Copynumber: 6.6 Consensus size: 7
738927 ATATATAAAT
*
738937 AATATAT
1 AATATAA
738944 AA-ATAA
1 AATATAA
*
738950 AGTATAA
1 AATATAA
738957 AATATAA
1 AATATAA
738964 AATATAA
1 AATATAA
738971 AATATAA
1 AATATAA
738978 AATA
1 AATA
738982 ATGAGTAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
6 4 0.12
7 30 0.88
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (7 bp):
AATATAA
Found at i:738976 original size:21 final size:20
Alignment explanation
Indices: 738913--738981 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 20
738903 GATAAAACCC
*
738913 AAAATA-AATAAATAATATAT
1 AAAATATAA-AAATAAAATAT
* *
738933 AAATAATATATAAATAAAGTAT
1 -AA-AATATAAAAATAAAATAT
738955 AAAATATAAAATATAAAATAT
1 AAAATATAAAA-ATAAAATAT
738976 AAAATA
1 AAAATA
738982 ATGAGTAATT
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
20 8 0.20
21 18 0.45
22 13 0.32
23 1 0.03
ACGTcount: A:0.70, C:0.00, G:0.01, T:0.29
Consensus pattern (20 bp):
AAAATATAAAAATAAAATAT
Found at i:739329 original size:44 final size:43
Alignment explanation
Indices: 739181--739668 Score: 429
Period size: 44 Copynumber: 11.3 Consensus size: 43
739171 TTAAGACTTA
* * *
739181 TTGAATAATATAA-AAA-CTCATCTAAGCAGAGGCTC-ACAACTT
1 TTGAAAAATA-AATAAAGCTCATCTAATCAGAAGCTCAACAAC-T
* ** *
739223 TTG-AAAATAAATAAAGCTCCTCT-ATGCAGTGGCTCAACGACT
1 TTGAAAAATAAATAAAGCTCATCTAAT-CAGAAGCTCAACAACT
*
739265 TTGAAAAATAATTAAAGCTCATCTAATCAGAAGCTCAACAACTT
1 TTGAAAAATAAATAAAGCTCATCTAATCAGAAGCTCAACAAC-T
* * * *
739309 TTGAAAAATAAATAAGGCTCATCTAAACAGATA-CTCTATAACT
1 TTGAAAAATAAATAAAGCTCATCTAATCAGA-AGCTCAACAACT
* * * *
739352 TTAGAAAAATAAATAAAGCTCTTTTAAT-AAAAGACTCAACGACT
1 TT-GAAAAATAAATAAAGCTCATCTAATCAGAAG-CTCAACAACT
* *
739396 TTAGAAAAATAAATAAAGCTTATCTAATAAGAAGCTCAACAACT
1 TT-GAAAAATAAATAAAGCTCATCTAATCAGAAGCTCAACAACT
* * * *
739440 TTGAAAAAATAAATAAAGCTCCTTTAAGT-AGAGGCTCAACGACT
1 TTG-AAAAATAAATAAAGCTCATCTAA-TCAGAAGCTCAACAACT
* * * * * *
739484 TTGAAAAAATAAATAAAACTCATCTAAGCGGATGCTTAACCACT
1 TTG-AAAAATAAATAAAGCTCATCTAATCAGAAGCTCAACAACT
* * * *
739528 TTGAAAAATAAATAAGGCTCTTCTAAACA-AAGGCTTAACAACT
1 TTGAAAAATAAATAAAGCTCATCTAATCAGAA-GCTCAACAACT
* *
739571 TTGAAAAAATAAATAAAGCTCATTTAAGT-AGAGGCTCAACAACT
1 TTG-AAAAATAAATAAAGCTCATCTAA-TCAGAAGCTCAACAACT
* * * * *
739615 TTGAAAAATAAATAAATCTCTTCTAAGCAGAAACTCAACAATT
1 TTGAAAAATAAATAAAGCTCATCTAATCAGAAGCTCAACAACT
739658 TTGAAAAATAA
1 TTGAAAAATAA
739669 GTGAAGCTTC
Statistics
Matches: 365, Mismatches: 61, Indels: 39
0.78 0.13 0.08
Matches are distributed among these distances:
40 2 0.01
41 9 0.02
42 23 0.06
43 117 0.32
44 207 0.57
45 7 0.02
ACGTcount: A:0.46, C:0.16, G:0.11, T:0.26
Consensus pattern (43 bp):
TTGAAAAATAAATAAAGCTCATCTAATCAGAAGCTCAACAACT
Found at i:739371 original size:88 final size:87
Alignment explanation
Indices: 739201--739668 Score: 470
Period size: 87 Copynumber: 5.4 Consensus size: 87
739191 TAAAAACTCA
* * * * *
739201 TCTAAGCAGAGGCTC-ACAACTTTTG-AAAATAAATAAAGCTCCTCTATGCAG-TGGCTCAACGA
1 TCTAATCAGAAGCTCAACAACTTTTGAAAAATAAATAAAGCTCATCTAAGCAGAT-GCTCAACAA
* *
739263 CTTTGAAAAATAATTAAAGCTCA
65 CTTTGAAAAATAAATAAAGCTCT
* * * * *
739286 TCTAATCAGAAGCTCAACAACTTTTGAAAAATAAATAAGGCTCATCTAAACAGATACTCTATAAC
1 TCTAATCAGAAGCTCAACAACTTTTGAAAAATAAATAAAGCTCATCTAAGCAGATGCTCAACAAC
739351 TTTAGAAAAATAAATAAAGCTCT
66 TTT-GAAAAATAAATAAAGCTCT
* * * * * ** *
739374 TTTAAT-AAAAGACTCAACGACTTTAGAAAAATAAATAAAGCTTATCTAATAAGAAGCTCAACAA
1 TCTAATCAGAAG-CTCAACAACTTTTGAAAAATAAATAAAGCTCATCTAAGCAGATGCTCAACAA
739438 CTTTGAAAAAATAAATAAAGCTCCT
65 CTTTG-AAAAATAAATAAAGCT-CT
* * * * * *
739463 T-TAAGT-AGAGGCTCAACGAC-TTTGAAAAAATAAATAAAACTCATCTAAGCGGATGCTTAACC
1 TCTAA-TCAGAAGCTCAACAACTTTTG-AAAAATAAATAAAGCTCATCTAAGCAGATGCTCAACA
*
739525 ACTTTGAAAAATAAATAAGGCTCT
64 ACTTTGAAAAATAAATAAAGCTCT
* * * * *
739549 TCTAAACA-AAGGCTTAACAAC-TTTGAAAAAATAAATAAAGCTCATTTAAGTAGAGGCTCAACA
1 TCTAATCAGAA-GCTCAACAACTTTTG-AAAAATAAATAAAGCTCATCTAAGCAGATGCTCAACA
*
739612 ACTTTGAAAAATAAATAAATCTCT
64 ACTTTGAAAAATAAATAAAGCTCT
* *
739636 TCTAAGCAGAAACTCAACAA-TTTTGAAAAATAA
1 TCTAATCAGAAGCTCAACAACTTTTGAAAAATAA
739669 GTGAAGCTTC
Statistics
Matches: 317, Mismatches: 52, Indels: 27
0.80 0.13 0.07
Matches are distributed among these distances:
85 13 0.04
86 22 0.07
87 141 0.44
88 134 0.42
89 7 0.02
ACGTcount: A:0.46, C:0.16, G:0.12, T:0.26
Consensus pattern (87 bp):
TCTAATCAGAAGCTCAACAACTTTTGAAAAATAAATAAAGCTCATCTAAGCAGATGCTCAACAAC
TTTGAAAAATAAATAAAGCTCT
Found at i:739573 original size:131 final size:131
Alignment explanation
Indices: 739197--739642 Score: 435
Period size: 131 Copynumber: 3.4 Consensus size: 131
739187 AATATAAAAA
* * * * * * *
739197 CTCATCTAAGCAGAGGCTC-ACAACTTTTG-AAAATAAATAAAGCTCCTCTATGCAG-TGGCTCA
1 CTCATTTAAGTAGAGGCTCAACAAC-TTTGAAAAATAAATAAAACTCATCTAAGCGGAT-GCTTA
* * * *
739259 ACGACTTT-GAAAAATAATTAAAGCTCATCTAATCAGAAGCTCAACAACTTTTG-AAAAATAAAT
64 ACCACTTTAGAAAAATAAATAAAGCTTATCTAATAAGAAGCTCAACAAC-TTTGAAAAAATAAAT
*
739322 AAGG
128 AAAG
* ** ** * * * * * *** * *
739326 CTCATCTAAACAGATACTCTATAACTTTAGAAAAATAAATAAAGCTCTTTTAA-TAAAAGACTCA
1 CTCATTTAAGTAGAGGCTCAACAACTTT-GAAAAATAAATAAAACTCATCTAAGCGGATG-CTTA
*
739390 ACGACTTTAGAAAAATAAATAAAGCTTATCTAATAAGAAGCTCAACAACTTTGAAAAAATAAATA
64 ACCACTTTAGAAAAATAAATAAAGCTTATCTAATAAGAAGCTCAACAACTTTGAAAAAATAAATA
739455 AAG
129 AAG
* *
739458 CTCCTTTAAGTAGAGGCTCAACGACTTTGAAAAAATAAATAAAACTCATCTAAGCGGATGCTTAA
1 CTCATTTAAGTAGAGGCTCAACAACTTTG-AAAAATAAATAAAACTCATCTAAGCGGATGCTTAA
* *
739523 CCACTTT-GAAAAATAAATAAGGCTCT-TCTAA-ACA-AAGGCTTAACAACTTTGAAAAAATAAA
65 CCACTTTAGAAAAATAAATAAAGCT-TATCTAATA-AGAA-GCTCAACAACTTTGAAAAAATAAA
739584 TAAAG
127 TAAAG
* *
739589 CTCATTTAAGTAGAGGCTCAACAACTTTGAAAAATAAATAAATCTCTTCTAAGC
1 CTCATTTAAGTAGAGGCTCAACAACTTTGAAAAATAAATAAAACTCATCTAAGC
739643 AGAAACTCAA
Statistics
Matches: 267, Mismatches: 38, Indels: 23
0.81 0.12 0.07
Matches are distributed among these distances:
129 19 0.07
130 33 0.12
131 113 0.42
132 100 0.37
133 2 0.01
ACGTcount: A:0.45, C:0.17, G:0.12, T:0.26
Consensus pattern (131 bp):
CTCATTTAAGTAGAGGCTCAACAACTTTGAAAAATAAATAAAACTCATCTAAGCGGATGCTTAAC
CACTTTAGAAAAATAAATAAAGCTTATCTAATAAGAAGCTCAACAACTTTGAAAAAATAAATAAA
G
Found at i:749826 original size:184 final size:185
Alignment explanation
Indices: 749615--749952 Score: 427
Period size: 184 Copynumber: 1.8 Consensus size: 185
749605 TAATTTGTTG
* * * * *
749615 AAATTTCATATAAATTATTCTACAATTTGAAATAAATTTA-AATAAATTTCTCACCTAGAGATTT
1 AAATTTCATATAAATTATTCCACAATTTGAAATAAATTTAGAA-AAAATTCTCACATAAAAATTT
* **
749679 CTTA-AAAAATTTATTATTTGAAAATTTTAAAAATCTCATCATTAAATAATTGA-TATTTAATTC
65 -TTATAAAAAATTACCATTTGAAAATTTTAAAAATCTCATCATTAAATAATT-ATTATTT-ATTC
* *
749742 -CAAAAT-TTTTATTTTTTTATTTTTTAAATTGAAAATAAATATTAATTATTATTATTGA
127 AAAAAATATTTT-TATTTTTATTTTTTAAATTGAAAATAAATATTAATTATTATTATTGA
* **
749800 AAATTTC-TCTAAATTATTCCACAATTTGGGATAAATTTAGAAAAAATTCTCACATAAAAATTTT
1 AAATTTCATATAAATTATTCCACAATTTGAAATAAATTTAGAAAAAATTCTCACATAAAAATTTT
* * **
749864 TATAAAAAATTACCATTTGAAATTTTTAAAAATTTCATCATTGGATAATTATTATTTATTCTAAA
66 TATAAAAAATTACCATTTGAAAATTTTAAAAATCTCATCATTAAATAATTATTATTTATTC-AAA
749929 AAATATTTTTATTTTTATTTTTTA
130 AAATATTTTTATTTTTATTTTTTA
749953 TATTCTTCCT
Statistics
Matches: 130, Mismatches: 17, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
183 8 0.06
184 90 0.69
185 28 0.22
186 4 0.03
ACGTcount: A:0.42, C:0.08, G:0.04, T:0.46
Consensus pattern (185 bp):
AAATTTCATATAAATTATTCCACAATTTGAAATAAATTTAGAAAAAATTCTCACATAAAAATTTT
TATAAAAAATTACCATTTGAAAATTTTAAAAATCTCATCATTAAATAATTATTATTTATTCAAAA
AATATTTTTATTTTTATTTTTTAAATTGAAAATAAATATTAATTATTATTATTGA
Found at i:749999 original size:9 final size:9
Alignment explanation
Indices: 749987--750018 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
749977 CAAAAATACT
*
749987 TAAAATAAA
1 TAAAAAAAA
749996 TAAAAAAAA
1 TAAAAAAAA
750005 TAAAAAAAA
1 TAAAAAAAA
750014 TAAAA
1 TAAAA
750019 TATAAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:750020 original size:14 final size:14
Alignment explanation
Indices: 749987--750026 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
749977 CAAAAATACT
*
749987 TAAAATAAATAAAA
1 TAAAATAAAAAAAA
750001 -AAAATAAAAAAAA
1 TAAAATAAAAAAAA
750014 TAAAATATAAAAA
1 TAAAATA-AAAAA
750027 TAGGAAAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 12 0.52
14 6 0.26
15 5 0.22
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.17
Consensus pattern (14 bp):
TAAAATAAAAAAAA
Found at i:750286 original size:19 final size:18
Alignment explanation
Indices: 750257--750293 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
750247 CATAATTCTT
*
750257 TTTTCCCTTTCTTTCTCC
1 TTTTCCCTTTCTCTCTCC
750275 TTTTCCCTTTTCTCTCTCC
1 TTTTCCC-TTTCTCTCTCC
750294 CTCTCTCTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTTCCCTTTCTCTCTCC
Done.