Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 52 of 402
Found at i:10033040 original size:25 final size:25
Alignment explanation
Indices: 10033011--10033062 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
10033001 TTGCCTAAAG
*
10033011 ACAAGCCAGGCACATAGGAATGGAA
1 ACAAGCCAGGCACATAGGAATGAAA
** *
10033036 ACAAGTTAGGCACATGGGAATGAAA
1 ACAAGCCAGGCACATAGGAATGAAA
10033061 AC
1 AC
10033063 TTCTAAACAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.44, C:0.17, G:0.27, T:0.12
Consensus pattern (25 bp):
ACAAGCCAGGCACATAGGAATGAAA
Found at i:10038659 original size:22 final size:22
Alignment explanation
Indices: 10038633--10038675 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
10038623 AGTGCTTAAA
10038633 GGGTAGACAAGTACCTTGGAAG
1 GGGTAGACAAGTACCTTGGAAG
*
10038655 GGGTAGACAAGTGCCTTGGAA
1 GGGTAGACAAGTACCTTGGAA
10038676 AGGTCATGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.14, G:0.37, T:0.19
Consensus pattern (22 bp):
GGGTAGACAAGTACCTTGGAAG
Found at i:10045117 original size:18 final size:19
Alignment explanation
Indices: 10045094--10045130 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
10045084 CCTCTATAGC
10045094 CCAA-GGGTAAGGGCTGAG
1 CCAAGGGGTAAGGGCTGAG
10045112 CCAAGGGGTAAGGGCTGAG
1 CCAAGGGGTAAGGGCTGAG
10045131 TGAGAGAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.27, C:0.16, G:0.46, T:0.11
Consensus pattern (19 bp):
CCAAGGGGTAAGGGCTGAG
Found at i:10087406 original size:19 final size:20
Alignment explanation
Indices: 10087370--10087408 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
10087360 CACTACAAGT
10087370 CAATAGCATAACTGACACAC
1 CAATAGCATAACTGACACAC
10087390 CAATA-CATAAGCT-ACACAC
1 CAATAGCATAA-CTGACACAC
10087409 ACTCAAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.46, C:0.31, G:0.08, T:0.15
Consensus pattern (20 bp):
CAATAGCATAACTGACACAC
Found at i:10102019 original size:23 final size:23
Alignment explanation
Indices: 10101989--10102042 Score: 108
Period size: 23 Copynumber: 2.3 Consensus size: 23
10101979 GATGGTCAAG
10101989 GCATGTACTTGTACCATGCACCA
1 GCATGTACTTGTACCATGCACCA
10102012 GCATGTACTTGTACCATGCACCA
1 GCATGTACTTGTACCATGCACCA
10102035 GCATGTAC
1 GCATGTAC
10102043 CTACACCACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (23 bp):
GCATGTACTTGTACCATGCACCA
Found at i:10102050 original size:23 final size:23
Alignment explanation
Indices: 10102001--10102050 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
10101991 ATGTACTTGT
* **
10102001 ACCATGCACCAGCATGTACTTGT
1 ACCATGCACCAGCATGTACCTAC
10102024 ACCATGCACCAGCATGTACCTAC
1 ACCATGCACCAGCATGTACCTAC
10102047 ACCA
1 ACCA
10102051 CATGCTAGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.30, C:0.36, G:0.14, T:0.20
Consensus pattern (23 bp):
ACCATGCACCAGCATGTACCTAC
Found at i:10114630 original size:26 final size:26
Alignment explanation
Indices: 10114601--10114653 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10114591 TCGATCCGAT
10114601 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
10114627 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10114653 C
1 C
10114654 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10114892 original size:158 final size:155
Alignment explanation
Indices: 10114627--10115128 Score: 508
Period size: 158 Copynumber: 3.2 Consensus size: 155
10114617 ACTCCGTATG
*
10114627 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAAT
1 CTTAGACATGGAATGAACTCTGTATGCCTAAG-CAACCCATGAAATGAGCGTGCGGGCACTCAGT
* * * * * *
10114692 CGGCCGAAGAGGCAGAATGCGTAAGCCGAGCATCGGCTCGATCCCCCTGAAGTGCTGTCGATCCT
65 CGGCCG-AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTG-CGTGCTGTCGATCCT
* *
10114757 GCTATCGCAACCCTCGGTCCAGTCT-GAT
128 ACTGTCGCAACCCTCGGTCC-GTCTCGAT
* * *
10114785 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCTGTATGCCTAAG-CAACCCATGAAATGAGCGTGCGGGCACTCAG
* * * * *
10114849 TCGGCCAGAGAGGCATAGTGGGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTATCGGTC
64 TCGGCC-GAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGAT-CCCC-CTGCGTGCTGTCGATC
* * * * * **
10114914 CCACTGCCACAACCCTCGGTCCGACTGGGG
126 CTACTGTCGCAACCCTCGGTCCGTCTCGAT
* * * * * * *
10114944 CCTATACATGGAATGAACTCTCTATGCCTAAGCTGACCCATGAAACGGGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGC-AACCCATGAAATGAGCGTGCGGGCACTCAGT
* * * * *
10115009 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCTTGCCTGTTGTCGATCCT
65 CGG-CCGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC-TGCGTGCTGTCGATCCT
* *
10115074 ACTGTCGCAACCCTTGGTCCGGT-TCAAT
128 ACTGTCGCAACCCTCGGTCC-GTCTCGAT
10115102 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCTGTATGC
10115129 TTAGATTGGG
Statistics
Matches: 277, Mismatches: 56, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.01
158 150 0.54
159 119 0.43
160 5 0.02
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCTGTATGCCTAAGCAACCCATGAAATGAGCGTGCGGGCACTCAGTC
GGCCGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTGCGTGCTGTCGATCCTACT
GTCGCAACCCTCGGTCCGTCTCGAT
Found at i:10114998 original size:159 final size:159
Alignment explanation
Indices: 10114629--10115056 Score: 454
Period size: 159 Copynumber: 2.7 Consensus size: 159
10114619 TCCGTATGCT
* *
10114629 TAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAATCG
1 TAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCATGAAATGAGCGTGCGGGCACTCAGTCG
* * * * * * *
10114694 GCCGAAGAGGCAGAATGCGTAAGCCGAGCATCGGCTCGAT-CCCC-CTGAAGTGCTGTCGATCCT
66 GCCG-AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGAAGTGCTATCGATCCC
* * * * * *
10114757 GCTATCGCAACCCTCGGTCCAGTCTGATCT
130 ACTACCACAACCCTCGGTCCAGACTGAGCC
* * *
10114787 TAGAC-TGGGAATGAACTCTGTATGCCTAAG-TCAACCCACGAAATGAGTGTGCGGGCACTGAGT
1 TAGACAT-GGAATGAACTCTGTATGCCTAAGCT-AACCCATGAAATGAGCGTGCGGGCACTCAGT
* * * * *
10114850 CGGCCAGAGAGGCATAGTGGGCAAGCCGGGGATCGACCCGATCCCCCTCTG-CGTGCTATCGGTC
64 CGGCC-GAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGAAGTGCTATCGATC
* *
10114914 CCACTGCCACAACCCTCGGTCC-GACTGGGGCC
128 CCACTACCACAACCCTCGGTCCAGACT-GAGCC
* * * * * *
10114946 TATACATGGAATGAACTCTCTATGCCTAAGCTGACCCATGAAACGGGCGTGCGGGCACTCAGCCG
1 TAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCATGAAATGAGCGTGCGGGCACTCAGTCG
* * *
10115011 GTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCT
66 G-CCGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCT
10115057 TGCCTGTTGT
Statistics
Matches: 221, Mismatches: 40, Indels: 17
0.79 0.14 0.06
Matches are distributed among these distances:
157 1 0.00
158 90 0.41
159 124 0.56
160 6 0.03
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (159 bp):
TAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCATGAAATGAGCGTGCGGGCACTCAGTCG
GCCGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGAAGTGCTATCGATCCCA
CTACCACAACCCTCGGTCCAGACTGAGCC
Found at i:10115138 original size:26 final size:26
Alignment explanation
Indices: 10115102--10115154 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10115092 CCGGTTCAAT
*
10115102 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
10115128 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10115154 C
1 C
10115155 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10116606 original size:159 final size:158
Alignment explanation
Indices: 10116249--10116666 Score: 416
Period size: 159 Copynumber: 2.6 Consensus size: 158
10116239 AACTCCGTAT
* * ** *
10116249 GCTTAGACACGAAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTATGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAG
** * *
10116314 CTGGCCGGAGAGGTAGAATTCGCAAGCCGAGGATCGGCTCGATCCCCCATGCGTGCTGTCGATCC
66 CCAGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGATCCCCCATGCGTGCTGTCGATCC
* ** *
10116379 TACTGTCACAACCCTCAGTTCGGTCTAA
131 CACTACCACAACCCTCAGTTCAGTCTAA
* * * * *
10116407 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCA
* * * * *
10116471 GCCAGCTGTAGAGGCATAATGCGCAAGCCGGGGATCGGC-CTGATCCCCCTCTGCGTGCTG-CTG
65 GCCAGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTC-GATCCCCC-ATGCGTGCTGTC-G
* *
10116534 GTCCCACTACCACAACCCTC-GTTTCAG-CTAGG
127 ATCCCACTACCACAACCCTCAG-TTCAGTCTA-A
* *** * * *
10116566 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTATGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAG
* * *
10116631 TC-GACCGGAGAGGCAGAATACGCAAGCCGGGGATCG
66 CCAG-CCGGAGAGGCAGAATGCGCAAGCCGAGGATCG
10116667 ACCTGGTCCC
Statistics
Matches: 211, Mismatches: 41, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
157 1 0.00
158 98 0.46
159 111 0.53
160 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAG
CCAGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGATCCCCCATGCGTGCTGTCGATCC
CACTACCACAACCCTCAGTTCAGTCTAA
Found at i:10117813 original size:26 final size:26
Alignment explanation
Indices: 10117775--10117827 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10117765 CCAATCTGAT
*
10117775 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10117801 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10117827 C
1 C
10117828 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10117932 original size:184 final size:184
Alignment explanation
Indices: 10117616--10117985 Score: 508
Period size: 184 Copynumber: 2.0 Consensus size: 184
10117606 TCCGACTAGG
* * * *
10117616 GCTTAGACATGCAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCTTGCAGGTGCTCAG
1 GCTTAGACATGCAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * *
10117681 CCGACCGGAGAGGTAGAATGCGTAAGCCGAGGACCGGCTCGATCTCCCCTGCGTGCTGTTCATCC
66 CCGACCGGAGAGATAGAATGAGCAAGCCGAGGACCAGCTCGATCCCCCCTGCGTGCTGTTCATCC
* *
10117746 TGCTGCCGCAACCCTCAGTCCAATCTGATCTTAGACTGGGAATGAACTTCGTAT
131 TGCTGCCGCAACCCTCAGTCCAATCTGATCTTAGACTAGGAATGAACTCCGTAT
* *
10117800 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGCAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * *
10117865 CCGATCGGAGAGA-ATGAATGAGCAAGCCGGGGATCAGCTCGGTCCCCCCTGCGTGCTGTTGATC
66 CCGACCGGAGAGATA-GAATGAGCAAGCCGAGGACCAGCTCGATCCCCCCTGCGTGCTGTTCATC
** * ***
10117929 CTGCTGTTGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTAT
130 CTGCTGCCGCAACCCTCAGTCCAATCTGATCTTAGACTAGGAATGAACTCCGTAT
10117984 GC
1 GC
10117986 CTAAGTCAAC
Statistics
Matches: 161, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
183 1 0.01
184 160 0.99
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGCAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CCGACCGGAGAGATAGAATGAGCAAGCCGAGGACCAGCTCGATCCCCCCTGCGTGCTGTTCATCC
TGCTGCCGCAACCCTCAGTCCAATCTGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:10118121 original size:158 final size:158
Alignment explanation
Indices: 10117800--10118237 Score: 393
Period size: 158 Copynumber: 2.8 Consensus size: 158
10117790 AACTTCGTAT
* *
10117800 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCAG
* * * ** * **
10117865 CCGATCGGAGAGAATGAATGAGCAAGCCGGGGATCAGCTCGGTCCCCCCTGCGTGCTGTTGATCC
66 CCGACCAGAGAGAATGAATGAGCAAGCCGGGGATCAGCCCAATCCCCCCTACGTGCTGCCGATCC
* ** * *
10117930 TGCTGTTGCAACCCTCGGTCTGGTCTGA
131 CGCTGTCACAACCCTCGGTCTCGACTGA
* * ** * * *
10117958 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCGTGAAACGAACGTGTGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCA
* * * * * *
10118022 GTCGGCCAGAGAGGCAT-AATGCGCAAGCTGGGGATCAGCCCAATCCCCCTCTACGTGCTGCCGG
65 GCCGACCAGAGA-GAATGAATGAGCAAGCCGGGGATCAGCCCAATCCCCC-CTACGTGCTGCCGA
10118086 TCCCGCTGTCACAACCCTCGGTC-CGACT-A
128 TCCCGCTGTCACAACCCTCGGTCTCGACTGA
* * * ** * *
10118115 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTACAGGCACTCA
1 -GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCA
* * * * * * * *
10118180 GCCAACCGGAAAGGCA-GAATGCGCAAGCCAGGGATC-GACCCAGTCCCCCCTGCGTGCT
65 GCCGACCAGAGA-GAATGAATGAGCAAGCCGGGGATCAG-CCCAATCCCCCCTACGTGCT
10118238 ACCAATCTTG
Statistics
Matches: 222, Mismatches: 51, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
157 11 0.05
158 177 0.80
159 34 0.15
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCAG
CCGACCAGAGAGAATGAATGAGCAAGCCGGGGATCAGCCCAATCCCCCCTACGTGCTGCCGATCC
CGCTGTCACAACCCTCGGTCTCGACTGA
Found at i:10120039 original size:26 final size:26
Alignment explanation
Indices: 10120003--10120055 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10119993 TCGGTCCGAT
*
10120003 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTGGGGAA-GAACTCTGCATG
10120029 CTTAGACTGGGGAAGAACTCTGCATG
1 CTTAGACTGGGGAAGAACTCTGCATG
10120055 C
1 C
10120056 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGAAGAACTCTGCATG
Found at i:10120664 original size:158 final size:158
Alignment explanation
Indices: 10120395--10120842 Score: 477
Period size: 159 Copynumber: 2.8 Consensus size: 158
10120385 AACTTCATAT
* * *
10120395 GCTTAGACATCGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
10120460 CCGGTCGGAGAGGCAGAATGCATAAGCCGAGGACCAACCTGGTCCCCCCTACGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCC
* * * *
10120525 TACTGCCAGAACCCTCGGTCCGGTCT-GA
131 TACTACCACAACCCTCGATCCAG-CTGGA
* * * * * *
10120553 TCTTAGAC-TAGGAATAAACTTCGTATGCCTAAGTCAACCCACGAAACGAGAGTGTGGGCGCTGA
1 GCTTAGACAT-GGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
10120617 GCCGGCCGGAGAGGCATAATGCACAAGCTGGGGATCGACCCGATCCCCTTCTGCATGCTACCGGT
65 GCCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCC-CCTGCGTGCTATCGAT
** *
10120682 CCCGCTACCACAACCCTCGATCCAGCTGGG
129 CCTACTACCACAACCCTCGATCCAGCTGGA
* * * * * *
10120712 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCTTACGGGCACTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ***
10120777 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGTTTCGGTCCCCCCTGCGTGCTATCGATCC
66 CCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCC
10120842 T
131 T
10120843 GTTGCTATCG
Statistics
Matches: 230, Mismatches: 56, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
157 1 0.00
158 108 0.47
159 120 0.52
160 1 0.00
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCC
TACTACCACAACCCTCGATCCAGCTGGA
Found at i:10120897 original size:26 final size:26
Alignment explanation
Indices: 10120861--10120938 Score: 129
Period size: 26 Copynumber: 3.0 Consensus size: 26
10120851 CGGTCTAATT
*
10120861 TTAGACTGGGAATTAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
10120887 TTAGACTGGGACTGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
10120913 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
10120939 CTAAATTAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:10121291 original size:26 final size:26
Alignment explanation
Indices: 10121253--10121306 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
10121243 CCATTTCGAT
10121253 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10121279 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10121305 CT
1 CT
10121307 AAGCCAACCC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10121354 original size:883 final size:847
Alignment explanation
Indices: 10119471--10121848 Score: 2422
Period size: 867 Copynumber: 2.8 Consensus size: 847
10119461 CTACTGCTGA
* * *
10119471 TCCTGCTACCACAACCCTTGGTTGAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
1 TCCTGCTACCGCAACCCTCGGTCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * * * * *
10119536 ATGGAATGAACTTTGTATGCCTAAGCCAACCTACAAAATGAGTGTGCGGGTG-TTAAGTCGATCG
65 ATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA-CCGATCG
* * ** * *
10119600 AAGAGGCAGAATGCGTAAGTC-AGGGACCGGCTCGGTCCCCCTTGCATGCCATCGATCCTGCTGC
129 GAGAGGCAGAATGCATAAGTCGA-GGACCACCT-GGTCCCCCCT-C-TG-CGTCGATCCT-CTGC
*
10119664 CACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATCAACTCCGTATGCCTAAGTCAACCCACG
188 CA-AACCCTCGGTC-GGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACG
* * * * *
10119729 AAACGAGCG-GTCGAGTGCTGAGCCGACCGGAGAGGGATAATGCGA-AAGTTGGGGATCGGCCCG
251 AAACGAGCGTGT-GGGCGCTGAGCCGGCCGGAGAGGCATAATGC-ACAAGCTGGGGATCGGCCCG
* * * * * * *
10119792 ATCCCCCTCTGCATACTGCCAGTCCCACTGCCACAACCCTCGGTCCGGTAGGGGCTTAAACATGG
314 ATCCCCCTCTGCATGCTGCCGGTCCCGCTACCACAACCCTCGATCCGCT-GGGGCTTAGACATGG
* * * ** * *
10119857 AATGAACTCTCTATGCCTAAGCCAACCCATGAAATC-GG-TGTGCGGACGTTCAACCGACC-GAA
378 AATGAACTCCCTATGCCTAAGCCAACCCACGAAA-CGGGCT-TGCGGGCACTCAGCCGGCCAG-A
* * * * *
10119919 GAGGCAGAATGCGTAAGCCGGGGATCAACCCGAT-CCCTCTGTGTGCTGTCGATCCTATTG-TCG
440 GAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTATTGCTCG
* * *
10119982 CAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGAAGAAC
505 CAACCCTGGATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
* * * * ***
10120047 TCTGCATGCCTAAGTCAACCCACAAAACGAGTGTACGGACGCTCAGCCGGCCAAAGAGGCCGACC
570 TCCGTATGCCTAAGTCAACCCAC-GAA--A-TG-A--G-CG-T--G-CGGGCACTCA-GCCGACC
* ** *
10120112 AGAGAGGCATAATGCACAAGCCGAAGATCAACCTGGCCCCCTTGTGCATGTTGCCGATCCTGCTA
622 AGAGAGGCATAATGCACAAGCTGGGGATCAACCTGGCCCCCTTGTGCATGTTACCGATCCTGCTA
* *
10120177 CACAACCCTCGGTCTGGATGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
687 CACAACCCTCGGTCTCGATAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * * *
10120242 AAACGAGCGTGTGGGTACTCAACCGACCGGAGAGGCAGAATGCGCAAGCCAAGGATCAACTCGGT
752 AAACGAGCGTGTGGGCACTCAACCGACCAGAGAGGCAGAATGCACAAGCCAAGGATCAACCCGAT
* *
10120307 CCCCCCTGCGTGCTACCGATCCTATTGCTGG
817 CCCCCCTGCGTGCTACCAATCCTATTACTGG
* * * * * * *
10120338 TCCTGTTGCCGTAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTTCATATGCTTAGAC
1 TCCTGCTACCGCAACCCTCGGTC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * *
10120403 ATCGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGTCGG
65 ATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGG
*
10120468 AGAGGCAGAATGCATAAGCCGAGGACCAACCTGGTCCCCCCTACGTGCTGTCGATCCTACTGCCA
130 AGAGGCAGAATGCATAAGTCGAGGACC-ACCTGGTCCCCCCT-C-TGC-GTCGATCCT-CTGCCA
* *
10120533 GAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATAAACTTCGTATGCCTAAGTCAACCCACGAA
190 -AACCCTCGGT-CGGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAA
* *
10120598 ACGAGAGTGTGGGCGCTGAGCCGGCCGGAGAGGCATAATGCACAAGCTGGGGATCGACCCGATCC
253 ACGAGCGTGTGGGCGCTGAGCCGGCCGGAGAGGCATAATGCACAAGCTGGGGATCGGCCCGATCC
* *
10120663 CCTTCTGCATGCTACCGGTCCCGCTACCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATG
318 CCCTCTGCATGCTGCCGGTCCCGCTACCACAACCCTCGATCC-GCTGGGGCTTAGACATGGAATG
*
10120728 AACTCCCTATGCCTAAGCCAACCCACGAAACGGGCTTACGGGCACTCAGCCGGCCAGAGAGGCAG
382 AACTCCCTATGCCTAAGCCAACCCACGAAACGGGCTTGCGGGCACTCAGCCGGCCAGAGAGGCAG
*** * *
10120793 AATGCGCAAGCCGGGGATCGTTTCGGTCCCCCCTGCGTGCTATCGATCCTGTTGCTATCGGTCTA
447 AATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTATTGC--TC-G-C--
** *** *
10120858 ATTTTAGACTGGGAATTAACTCCGTATGCTTAGACTGGGACTGAACTCCGTATGCTTAGACTGGG
506 A----ACCCT-GG-ATTCGGTCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * *
10120923 GATGAACTCCGTATGCCTAAATTAACCCACGAAATGAGCGTGCGGGCACTCAGCCGGCCAGAGAG
563 GATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGACCAGAGAG
* * * *
10120988 GCATAATGCACAAGTTGGGGATCAGCCTGATCCCCCTTTGTGTGCTGCCGATCCCGTTACCGGTC
628 GCATAATGCACAAGCTGGGGATCAACCTG-GCCCCC----T-TG-TG-C-AT---GTTACCGATC
*
10121053 CTGCTGCCACAACCCTCGGTC-CGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
681 CTGCT-ACACAACCCTCGGTCTCGA-TAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
* * *** ** *
10121117 AACCCACGAAATGAGCGTGTGGGCGCTCAACCGGTTAGAGAGGCAGAATGCACAAGCCGGGGATT
744 AACCCACGAAACGAGCGTGTGGGCACTCAACCGACCAGAGAGGCAGAATGCACAAGCCAAGGATC
* ** *
10121182 GACCCGATCCCCCCTGCGTGCTGTCAATCCTGTTACTGG
809 AACCCGATCCCCCCTGCGTGCTACCAATCCTATTACTGG
* *
10121221 TCCTGCTACCGCAACCCTCGGTCCATTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
1 TCCTGCTACCGCAACCCTCGGTCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
*
10121286 ATGGAATGAACTCTGTATG-CTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCCGACCG
65 ATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA-CCGATCG
* * * * * *
10121350 GAGAGGTAGAATGCACAAGTCGGGGATCGACCCGAT-CCCCC-CT-CG--G----T-T-------
129 GAGAGGCAGAATGCATAAGTCGAGGA-CCACCTGGTCCCCCCTCTGCGTCGATCCTCTGCCAAAC
* *
10121398 --T-GGT---TC-AATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
193 CCTCGGTCGGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* ** * * * * * * *
10121456 CGTGCGGGCATTGAGCCAGTCGGAGAGGCATATTGCGCAAGCCGGGGATCGGTCC-AGTCCCCCA
258 CGTGTGGGCGCTGAGCCGGCCGGAGAGGCATAATGCACAAGCTGGGGATCGGCCCGA-TCCCCCT
* * * * * *
10121520 CTACGTGCTGTCGATCCCGCTACCACAACTCTC-AGTCCGGCAGGGGCTTAGACATGGAATGAAC
322 CTGCATGCTGCCGGTCCCGCTACCACAACCCTCGA-TCC-GCTGGGGCTTAGACATGGAATGAAC
* *
10121584 TCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGCCTGCCAGAGAGGCAGAAT
385 TCCCTATGCCTAAGCCAACCCACGAAACGGGCTTGCGGGCACTCAGCCGGCCAGAGAGGCAGAAT
* *
10121649 GCACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGC-CGCAACCCTCGG
450 GCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTATTGCTCGCAACCCT-GG
* *
10121713 -TCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGC
514 ATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGC
* * * * ** *
10121777 CTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGACCAAAGAGGCAGGATGCGCAAGCT
579 CTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGACCAGAGAGGCATAATGCACAAGCT
10121842 GGGGATC
644 GGGGATC
10121849 GAACGGGTGG
Statistics
Matches: 1267, Mismatches: 197, Indels: 123
0.80 0.12 0.08
Matches are distributed among these distances:
838 112 0.09
839 2 0.00
840 5 0.00
842 5 0.00
846 1 0.00
848 1 0.00
849 1 0.00
850 1 0.00
852 2 0.00
853 258 0.20
854 2 0.00
858 3 0.00
859 1 0.00
866 3 0.00
867 385 0.30
868 37 0.03
869 1 0.00
870 36 0.03
871 14 0.01
872 2 0.00
873 1 0.00
874 1 0.00
875 5 0.00
876 3 0.00
877 3 0.00
878 3 0.00
879 8 0.01
880 3 0.00
881 7 0.01
882 61 0.05
883 299 0.24
884 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (847 bp):
TCCTGCTACCGCAACCCTCGGTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACA
TGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGGA
GAGGCAGAATGCATAAGTCGAGGACCACCTGGTCCCCCCTCTGCGTCGATCCTCTGCCAAACCCT
CGGTCGGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
GTGGGCGCTGAGCCGGCCGGAGAGGCATAATGCACAAGCTGGGGATCGGCCCGATCCCCCTCTGC
ATGCTGCCGGTCCCGCTACCACAACCCTCGATCCGCTGGGGCTTAGACATGGAATGAACTCCCTA
TGCCTAAGCCAACCCACGAAACGGGCTTGCGGGCACTCAGCCGGCCAGAGAGGCAGAATGCGCAA
GCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTATTGCTCGCAACCCTGGATTCGGT
CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
AACCCACGAAATGAGCGTGCGGGCACTCAGCCGACCAGAGAGGCATAATGCACAAGCTGGGGATC
AACCTGGCCCCCTTGTGCATGTTACCGATCCTGCTACACAACCCTCGGTCTCGATAGGGCTTAGA
CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAACCGACCA
GAGAGGCAGAATGCACAAGCCAAGGATCAACCCGATCCCCCCTGCGTGCTACCAATCCTATTACT
GG
Found at i:10121753 original size:26 final size:26
Alignment explanation
Indices: 10121724--10121776 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10121714 CCGGTCCGAT
*
10121724 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10121750 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10121776 C
1 C
10121777 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10123208 original size:329 final size:314
Alignment explanation
Indices: 10122460--10123239 Score: 798
Period size: 317 Copynumber: 2.4 Consensus size: 314
10122450 AACTCCGTAT
* *
10122460 GCTTAGACATGTAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGACCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAAC-AGCGTGCGGGCGCTCAG
* * * ** * * *
10122525 CCGGTCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCAGTCCCCCACTGTTTGTTGTTGAAC
65 ACGGTCGGAGAGGCAGAATGCGCAAGCC-AGGATCGACCCGGTCCCCC-CTGAGTGCTGTCGATC
*
10122590 CTACTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGAATGAACTCTCTATGCATAAGTCAA
128 CTACTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGAATGAACTCTCTATGCATAAGTCAA
* * * *
10122655 CCCATGAAAAGAGCGTACGGGTGCTGAGTCGACCAAAGAGGCATAATGCGCAAGCCGGGGATCAG
193 CCCACGAAAAGAGCGTACGGGCGCTGAGCCGACCAAAGAGGCATAATGCGCAAGCCGGGGATCAA
* * *
10122720 CCCGGTCCCCCTCTACGTGCTGCCTGTCCCGTTCCCACATCCCTCGATCTGGCTAGG
258 CCCGGTCCCCCTCTACGTGCTGCCTGTCCCGTTCCCACAACCCTCGATCCGACTAGG
** * *
10122777 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACATGCGGGCGCTCA-
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACAG-CGTGCGGGCGCTCAG
* * * * * *
10122841 ACTGACTGGAGAGGTAGAATGCACAAGTCAGGGATCGACCCGGTCCCCCTTGAGTGCTGTCGATC
65 ACGGTC-GGAGAGGCAGAATGCGCAAGCCA-GGATCGACCCGGTCCCCCCTGAGTGCTGTCGATC
* * * * *
10122906 TTGCTACCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGAAATGAACTC-CGTATGCCTAAGTC
128 CTACTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGG-AATGAACTCTC-TATGCATAAGTC
* * * * * * * *
10122970 AACTCACGAAACGTGTGTGCGGGCGCTTAGCCGGCTGAAA-AGGCATAATGCGCAAGCCGGGGAT
191 AACCCACGAAAAGAGCGTACGGGCGCTGAGCCGAC-CAAAGAGGCATAATGCGCAAGCCGGGGAT
* * * *
10123034 CAACCCGGTTCGCCTCTGCGTGCTGCC-GATCCCACTACCGATCCTGCTGCCATAACCCTC-AGT
255 CAACCCGGTCCCCCTCTACGTGCTGCCTG-T----C--CCG-T--T-C--CCACAACCCTCGA-T
*
10123097 CCGACTGGG
306 CCGACTAGG
* **
10123106 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTACTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAAC-AGCGTGCGGGCGCTCAG
* * * * *
10123171 TCGGTCGAAAAGGCAGAATGCGCAAGCCGACGATCGACCCGATCCCCCCT-ACGTGCTGTCGATC
65 ACGGTCGGAGAGGCAGAATGCGCAAGCC-AGGATCGACCCGGTCCCCCCTGA-GTGCTGTCGATC
10123235 CTACT
128 CTACT
10123240 GCTGGTCCTG
Statistics
Matches: 373, Mismatches: 66, Indels: 36
0.79 0.14 0.08
Matches are distributed among these distances:
316 51 0.14
317 185 0.50
318 3 0.01
321 1 0.00
323 3 0.01
324 1 0.00
326 1 0.00
327 1 0.00
328 2 0.01
329 120 0.32
330 5 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.20
Consensus pattern (314 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACAGCGTGCGGGCGCTCAGA
CGGTCGGAGAGGCAGAATGCGCAAGCCAGGATCGACCCGGTCCCCCCTGAGTGCTGTCGATCCTA
CTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGAATGAACTCTCTATGCATAAGTCAACCC
ACGAAAAGAGCGTACGGGCGCTGAGCCGACCAAAGAGGCATAATGCGCAAGCCGGGGATCAACCC
GGTCCCCCTCTACGTGCTGCCTGTCCCGTTCCCACAACCCTCGATCCGACTAGG
Found at i:10123809 original size:171 final size:171
Alignment explanation
Indices: 10123426--10123821 Score: 399
Period size: 171 Copynumber: 2.3 Consensus size: 171
10123416 TGCGTGCCAC
* * * * *
10123426 CGATCCTACTATCACAACCCTTAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATACCTA
1 CGATCCTGCTACCACAACCCTAAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTA
* * * *
10123491 AGTCAACCCAAGAAACGAGCGTGCGGGCGCTTAGCCGATCGGAAAGGCAGAATGCGCAAGCCAGG
66 AGCCAACCCAAGAAACAAGCGTGCGGGCGCTCAGCCGATCGGAAAGGCAGAATGCACAAGCCAGG
* * * *
10123556 GATCAGCTCTGTCCACCTCTGCGTGCTGCCGATCCCACTAT
131 GATCAGATCGGTCCACCCCTGCATGCTGCCGATCCCACTAT
* * * ** *
10123597 CGATCCTGCTGCCACAACCCTAAGT-CTGACTGGGGCTTAGACAT-GGAATGAACTCCGTATGCC
1 CGATCCTGCTACCACAACCCTAAGTCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATACC
* * *
10123660 TAAGCCAACCCATGAAACAAGCGTGCGGGGCGCTCAGCCGA-CTGAAGAGGCAGAATGCACAAGT
64 TAAGCCAACCCAAGAAACAAGCGTGC-GGGCGCTCAGCCGATCGGAA-AGGCAGAATGCACAAGC
* ** *
10123724 CGGGGATC-GATCGGATCC-CCCCTGCATGCTGTTGATCCTAC-AGT
127 CAGGGATCAGATCGG-TCCACCCCTGCATGCTGCCGATCCCACTA-T
* * * * * **
10123768 TGGTCGTGCTACCGCAACTCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT
1 CGATCCTGCTACCACAACCCTAAGTCCGGTCTGATCTTAGACTGGGAATGAACT
10123822 TTGTATGCTT
Statistics
Matches: 179, Mismatches: 38, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
170 5 0.03
171 131 0.73
172 43 0.24
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (171 bp):
CGATCCTGCTACCACAACCCTAAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTA
AGCCAACCCAAGAAACAAGCGTGCGGGCGCTCAGCCGATCGGAAAGGCAGAATGCACAAGCCAGG
GATCAGATCGGTCCACCCCTGCATGCTGCCGATCCCACTAT
Found at i:10123841 original size:26 final size:26
Alignment explanation
Indices: 10123803--10123855 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10123793 CCGGTCTGAT
*
10123803 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
10123829 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
10123855 C
1 C
10123856 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:10124002 original size:526 final size:517
Alignment explanation
Indices: 10122777--10124355 Score: 1751
Period size: 526 Copynumber: 3.1 Consensus size: 517
10122767 TCTGGCTAGG
*
10122777 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GACATGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-CATGCGGGCGCTCA
* * ** * * * *
10122841 ACTGACTGGAGAGGTAGAATGCACAAGTCAGGGA-TCGACCCGGTCCCCCTTGAGTGCTGTCGAT
65 ACCGAC-GGAGAGGCAGAATGCGTAAGTCGGGGACT-GGCCC-GTCCCCCCTGAGTGCTATCGAT
* *
10122905 CTTGCTACCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGTC
127 CATGCTACCGCAACCCTCAGTTCGGTCCGATCTTAGACTGG-AATGAACTCCGTATGCCTAAGTC
* * * * *
10122970 AACTCACGAAACGTGTGTGCGGGCGCTTAGCCG-GCTGAAAAGGCATAATGCGCAAGCCGGGGAT
191 AACCCAAGAAACGAGCGTGCGGGCGCTTAGCCGAGC-GGAAAGGCATAATGCGCAAGCCGGGGAT
* * * * * *
10123034 CAACCCGGTTCGCCTCTGCGTGCTGCCGATCCCACTACCGATCCTGCTGCCATAACCCTCAGTCC
255 CAGCCCAGTCCACCTCTGCGTGCTGCCGATCCCACTATCGATCCTGCTGCCATAACCCTAAGT-C
* *
10123099 GACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGG
319 GACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGG
* * * * * * *
10123164 TACTCAGTCGGTCGAAAAGGCAGAATGCGCAAGCCGACGATCGACCCGATCCCCCCTACGTGCTG
384 CACTCAGCCGCT-GAAGAGGCAGAATGCGCAAGCCGAGGATCGACCGGATCCCCCCTGC-TGCTG
* * * * *
10123229 TCGATCCTACTGCTGGTCCTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGATTAGGAATGAA
447 TTGATCCTAC-G-TGGTCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAA
*
10123294 CTTCGTAT
510 CTTTGTAT
* * * * *
10123302 GCTTAGACATGGAATAAACTCCTTATGCCTCAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAA
* * * * * *
10123367 CCAACCGGAGAGGCAGAATGCGTAAGTCGAGGACTGGCCCGATCCCCCCTGCGTGCCACCGATCC
66 CCGA-CGGAGAGGCAGAATGCGTAAGTCGGGGACTGGCCCG-TCCCCCCTGAGTGCTATCGATCA
* * * * * * *
10123432 TACTATCACAACCCTTAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATACCTAAGTCAA
129 TGCTACCGCAACCCTCAGTTCGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAA
* * *
10123497 CCCAAGAAACGAGCGTGCGGGCGCTTAGCCGATCGGAAAGGCAGAATGCGCAAGCCAGGGATCAG
193 CCCAAGAAACGAGCGTGCGGGCGCTTAGCCGAGCGGAAAGGCATAATGCGCAAGCCGGGGATCAG
* * *
10123562 CTCTGTCCACCTCTGCGTGCTGCCGATCCCACTATCGATCCTGCTGCCACAACCCTAAGTCTGAC
258 CCCAGTCCACCTCTGCGTGCTGCCGATCCCACTATCGATCCTGCTGCCATAACCCTAAGTC-GAC
*
10123627 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGGCG
322 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGC-GGGCA
* * * *
10123692 CTCAGCCGACTGAAGAGGCAGAATGCACAAGTCGGGGATCGATCGGATCCCCCCTGCATGCTGTT
386 CTCAGCCG-CTGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCGGATCCCCCCTGC-TGCTGTT
* * *
10123757 GATCCTACAGTTGGTCGTGCTACCGCAACTCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT
449 GATCCTAC-G-TGGTCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT
10123822 TTGTAT
512 TTGTAT
* * *** *
10123828 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATATAGGCTCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAA
* * * *
10123893 CCGATCGGAGAGGCAGAATGTGTAAGCCGGGGACTGGCCCAGTCCCCCCTGTGAGCTATCGATCA
66 CCGA-CGGAGAGGCAGAATGCGTAAGTCGGGGACTGGCCC-GTCCCCCCTGAGTGCTATCGATCA
* *
10123958 TGC-AGCCGCAACCCTCAGTTTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCA
129 TGCTA-CCGCAACCCTCAGTTCGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCA
* * * * * *
10124022 ACCCATGAAACGAGCGTGCGGGCACTAAGCC-AGCCGAAGAGGCATAATGCGCAAGACGGGGACC
192 ACCCAAGAAACGAGCGTGCGGGCGCTTAGCCGAGCGGAA-AGGCATAATGCGCAAGCCGGGGATC
* * * *
10124086 GGCCCAGTCCCCCTCTGCGTGCT---G-T----C--T-G-TCCTGCTG-CATAACCCTCGATTCG
256 AGCCCAGTCCACCTCTGCGTGCTGCCGATCCCACTATCGATCCTGCTGCCATAACCCT-AAGTCG
** * **
10124138 GTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGC
320 ACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGC
* * *
10124203 ACTCAGCCGGC-CAGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCTGG-TCCCCCCTGC-G-TG
385 ACTCAGCC-GCTGA-AGAGGCAGAATGCGCAAGCCGAGGATCGACC-GGATCCCCCCTGCTGCTG
* * *
10124264 -T-A-GC--C--GATCCTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT
447 TTGATCCTACGTGGTCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT
*
10124322 CTGTAT
512 TTGTAT
10124328 GCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
10124356 TTAGACTAGA
Statistics
Matches: 900, Mismatches: 137, Indels: 59
0.82 0.12 0.05
Matches are distributed among these distances:
499 1 0.00
500 78 0.09
504 1 0.00
506 1 0.00
507 1 0.00
508 1 0.00
509 2 0.00
510 1 0.00
511 1 0.00
512 47 0.05
513 68 0.08
514 11 0.01
515 1 0.00
516 1 0.00
518 1 0.00
522 1 0.00
523 1 0.00
524 2 0.00
525 330 0.37
526 348 0.39
527 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (517 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAA
CCGACGGAGAGGCAGAATGCGTAAGTCGGGGACTGGCCCGTCCCCCCTGAGTGCTATCGATCATG
CTACCGCAACCCTCAGTTCGGTCCGATCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCC
AAGAAACGAGCGTGCGGGCGCTTAGCCGAGCGGAAAGGCATAATGCGCAAGCCGGGGATCAGCCC
AGTCCACCTCTGCGTGCTGCCGATCCCACTATCGATCCTGCTGCCATAACCCTAAGTCGACTGGG
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAG
CCGCTGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCGGATCCCCCCTGCTGCTGTTGATCCTA
CGTGGTCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTTGTAT
Found at i:10124129 original size:158 final size:157
Alignment explanation
Indices: 10123829--10124329 Score: 417
Period size: 158 Copynumber: 3.2 Consensus size: 157
10123819 ACTTTGTATG
* * * * *** *
10123829 CTTAGAC-ATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATATAGGCTCTCAA
1 CTTAGACTA-GGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCACT-AA
* * * * * * * * * *
10123893 -CC-GATCGGAGAGGCAGAATGTGTAAGCCGGGGACTGGCCCAGTCCCCCCTGTGAGCTA-TCGA
64 GCCAG-CCAGAGAGGCAGAATGCGCAAGACGAGGACCGGCCCAGTCCCCCCTGCGTG-TAGCCGA
* * ** *
10123955 TCATGCAGCCGCAACCCTCAGTTTGGTCCGAT
127 TCCTGCTGCCATAACCCTC-GTTCGGTCCGAT
*
10123987 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTAAGC
1 CTTAGACTAGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCACTAAGC
* * *
10124052 CAGCC-GAAGAGGCATAATGCGCAAGACGGGGACCGGCCCAGTCCCCCTCTGCGTGCT-GTCTG-
66 CAGCCAG-AGAGGCAGAATGCGCAAGACGAGGACCGGCCCAGTCCCCC-CTGCGTG-TAG-CCGA
** **
10124114 TCCTGCTG-CATAACCCTCGATTCGGTTGGGG
127 TCCTGCTGCCATAACCCTCG-TTCGGTCCGAT
* * * *
10124145 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCACTAAG
* * * * **
10124209 CCGGCCAGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCTGGTCCCCCCTGCGTGTAGCCGATCC
65 CCAGCCAGAGAGGCAGAATGCGCAAGACGAGGACCGGCCCAGTCCCCCCTGCGTGTAGCCGATCC
* * *
10124274 TGCTGCCGTAACCCTCGGTCCGGTCTGAT
130 TGCTGCCATAACCCTC-GTTCGGTCCGAT
* *
10124303 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
10124330 TTAGACTAGG
Statistics
Matches: 277, Mismatches: 51, Indels: 30
0.77 0.14 0.08
Matches are distributed among these distances:
156 3 0.01
157 21 0.08
158 235 0.85
159 17 0.06
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
CTTAGACTAGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCACTAAGC
CAGCCAGAGAGGCAGAATGCGCAAGACGAGGACCGGCCCAGTCCCCCCTGCGTGTAGCCGATCCT
GCTGCCATAACCCTCGTTCGGTCCGAT
Found at i:10124332 original size:26 final size:25
Alignment explanation
Indices: 10124303--10124381 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 25
10124293 CCGGTCTGAT
*
10124303 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACT-GGAATGAACTCCGTATG
10124329 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACT-GGAATGAACTCCGTATG
*
10124355 CTTAGACTAGAGATGAACTCCGTATG
1 CTTAGACTGGA-ATGAACTCCGTATG
10124381 C
1 C
10124382 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
25 2 0.04
26 47 0.96
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:10125433 original size:25 final size:26
Alignment explanation
Indices: 10125399--10125450 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
10125389 CCGGTCCAAT
10125399 CTTAGACATGGAATGAACTCC-TATG
1 CTTAGACATGGAATGAACTCCATATG
10125424 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
10125450 C
1 C
10125451 CCACGAAACG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:10125914 original size:158 final size:156
Alignment explanation
Indices: 10125450--10125906 Score: 412
Period size: 158 Copynumber: 2.9 Consensus size: 156
10125440 ACTCCATATG
* * * *
10125450 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCAA
1 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCCT-AGCCGGGGATTAG
* * * * * * *
10125515 CCTGGTCCCCCCCGTATGCTGTCAATCTTGCTACTGCAACCCTCGATCCGGTCCGATCTTAGACT
65 CCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACT
*
10125580 AGGAATGAACTCCGTATGCCTAAGTCAA
130 -GGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * * * * * * *
10125608 CCCACGAAACAAGTGTTCGGGCTCTGAGCCAGCCGGAGAGGCATAATGTGCAAGTCGAGGA-TCG
1 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATG-CCTAGCCGGGGATTAG
* ** ** * ** * * ** **
10125672 CCCAGTCCCCCTCTACGTGCTACCGGTCCCACTACCACAACCCTCTGTCCGGTTGGGGCTTAGAC
65 CCCGGTCCCCC-CTGTGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGAC
*
10125737 ATGGAATGAACTCCCTATGCCTAAGCCAA
129 -TGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
10125766 CTCACGAAACGGGCATGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACTAGCCGGGGATTGG
1 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGC-CTAGCCGGGGATTAG
* * **
10125831 CCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTGCCGCAACCCTCGGCCCAATCCGATCTTAGACT
65 CCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACT
10125896 GGGAATGAACT
130 -GGAATGAACT
10125907 TTGTATGCTT
Statistics
Matches: 219, Mismatches: 74, Indels: 12
0.72 0.24 0.04
Matches are distributed among these distances:
157 10 0.05
158 196 0.89
159 13 0.06
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (156 bp):
CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCCTAGCCGGGGATTAGC
CCGGTCCCCCCTGTGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
GAATGAACTCCGTATGCCTAAGCCAA
Found at i:10125938 original size:26 final size:26
Alignment explanation
Indices: 10125888--10125940 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10125878 CCAATCCGAT
**
10125888 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10125914 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10125940 C
1 C
10125941 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10132001 original size:26 final size:26
Alignment explanation
Indices: 10131950--10132002 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10131940 GGCTCAAACT
* *
10131950 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10131976 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
10132002 C
1 C
10132003 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10132827 original size:157 final size:156
Alignment explanation
Indices: 10132328--10132827 Score: 472
Period size: 157 Copynumber: 3.2 Consensus size: 156
10132318 ACTTCGTATG
* * * * *
10132328 CTTAGAAAT-GGACTGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCGTTCAA
1 CTTAG-AATGGGAATGAACTCCATATGCC-AAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
10132392 CCGACCGGAGTGGCAGAATGTGCAAGCCCGGCATCGACCTGGTCCCCCCTGCGTGCTGTCGATCC
64 CCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACC-GGTCCCCCCTGCGTGCTATCGATCC
* * *
10132457 TACTACCCCAACCCTCAGTCCGGTCCGAT
128 TGCTGCCACAACCCTCAGTCCGGTCCGAT
* * ** * ** * *
10132486 C-TGGACTGGGAATGAACTCTGTATGTCTAAGTTAACCCATGAAACGAGCGTACGGGCGCTGAGC
1 CTTAGAATGGGAATGAACTCCATATG-CCAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
10132550 TGGTCGGAGAGGC-GTAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGCGTGTTA-CCAGT
65 CGATCGGAGAGGCAG-AATGTGCAAGCCGGGGATC-GACCGGTCCCCC-CTGCGTGCTATCGA-T
* * * * *
10132613 CCCGCTGCCACAACCCTCAGT-CTGACTGAAG
126 CCTGCTGCCACAACCCTCAGTCCGGTCCG-AT
* ** *
10132644 CTTAGACAT-GGAATGAACTCCCTATGCCAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGA-ATGGGAATGAACTCCATATGCCAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
*
10132708 CGATCGGAGAGGCAGAATGTACAAGCCGGGGATCGACACGGTCCCCCCTGCGTGCTATCGATCCT
65 CGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGAC-CGGTCCCCCCTGCGTGCTATCGATCCT
* *
10132773 GCTGCCATAACCCTCAATCCGGTCCGAT
129 GCTGCCACAACCCTCAGTCCGGTCCGAT
*
10132801 CTTAGATTGGGAATGAACTCCATATGC
1 CTTAGAATGGGAATGAACTCCATATGC
10132828 TTTGACTGGG
Statistics
Matches: 263, Mismatches: 65, Indels: 29
0.74 0.18 0.08
Matches are distributed among these distances:
156 4 0.02
157 135 0.51
158 104 0.40
159 19 0.07
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (156 bp):
CTTAGAATGGGAATGAACTCCATATGCCAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
GATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCGGTCCCCCCTGCGTGCTATCGATCCTGC
TGCCACAACCCTCAGTCCGGTCCGAT
Found at i:10133379 original size:159 final size:158
Alignment explanation
Indices: 10133035--10133467 Score: 466
Period size: 159 Copynumber: 2.7 Consensus size: 158
10133025 ATCTCCGTAT
* * *
10133035 GCTTAGTA-ATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
1 GCTTAG-ACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
10133099 GTTGATCGGAGAGACAGAATGCGTAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGCCGATC
65 GCTGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCTGATCCCCCCTGCGTGCTGCCGATC
* * *
10133164 CTAATGCAGCAACCCTGGGTCTAGTCTGA
130 CCAATGCAGCAACCCTCGGTCTAGACTGA
* * * *
10133193 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCC-ACCCATGAAACGAACGTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCATAAG-CCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * *
10133256 AGCTGGTCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCTGATCCCCCTCTGCGTGCTGTCGA
64 AGCTGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCTGATCCCCC-CTGCGTGCTGCCGA
** * *
10133321 TCCCGCTGCCA-CAACCCTCGGTC-CGACTGGG
128 TCCCAATG-CAGCAACCCTCGGTCTAGACT-GA
* * * * *
10133352 GCTTAGACATGGAATGGACTCCCTATGCCA-AAGCCAACCCACGAAACGGGCGTGTGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATG-CATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
10133416 GCCGATCGGAGAGGTAGAATGCACAAGCCGAGGATCGACCTGA-CCCCTCCTG
65 GCTGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCTGATCCCC-CCTG
10133468 TGTGTTATCG
Statistics
Matches: 226, Mismatches: 39, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
157 2 0.01
158 103 0.46
159 116 0.51
160 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CTGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCTGATCCCCCCTGCGTGCTGCCGATCC
CAATGCAGCAACCCTCGGTCTAGACTGA
Found at i:10133537 original size:158 final size:157
Alignment explanation
Indices: 10133045--10133537 Score: 526
Period size: 158 Copynumber: 3.1 Consensus size: 157
10133035 GCTTAGTAAT
* * * *
10133045 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTTGATCGGAG
1 GGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGATCGGAG
* * * * * *
10133110 AGACAGAATGCGTAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCCTAATGCAGCA
66 AGGCAGAATGCGCAAGCCGAGGATCGACCTGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCA
* * *
10133175 ACCCTGGGTCTAGTCTGATCTTAGACTG
131 ACCCTCGGTC-CGTCTGATCTTAGACTA
* * * * *
10133203 GGAATGAACTCCGTATG-CATAAGTCC-ACCCATGAAACGAACGTGCGGGCGCTGAGCTGGTCGA
1 GGAATGAACTCCGTATGCCA-AAG-CCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGATCGG
* * **
10133266 AGAGGCATAATGCGCAAGCCGAGGATCGGCCTGATCCCCCTCTGCGTGCTGTCGATCCCGCTGCC
64 AGAGGCAGAATGCGCAAGCCGAGGATCGACCTGATCCCCC-CTGCGTGCTGTCGATCCTACTGCC
* * **
10133331 ACAACCCTCGGTCCGACTGGGGCTTAGAC-A
128 GCAACCCTCGGTCCGTCT-GATCTTAGACTA
* * * * * *
10133361 TGGAATGGACTCCCTATGCCAAAGCCAACCCACGAAACGGGCGTGTGGGTGCTCAGCCGATCGGA
1 -GGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGATCGGA
* * * * *
10133426 GAGGTAGAATGCACAAGCCGAGGATCGACCTGA-CCCCTCCTGTGTGTTATCGATCCTACTGCCG
65 GAGGCAGAATGCGCAAGCCGAGGATCGACCTGATCCCC-CCTGCGTGCTGTCGATCCTACTGCCG
* *
10133490 TAACCCTTGGTCCGGTCTGATCTTAGACTA
129 CAACCCTCGGTCC-GTCTGATCTTAGACTA
*
10133520 AGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
10133538 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 55, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
157 1 0.00
158 146 0.54
159 121 0.45
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGATCGGAG
AGGCAGAATGCGCAAGCCGAGGATCGACCTGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCA
ACCCTCGGTCCGTCTGATCTTAGACTA
Found at i:10133540 original size:26 final size:26
Alignment explanation
Indices: 10133523--10133589 Score: 116
Period size: 26 Copynumber: 2.6 Consensus size: 26
10133513 TAGACTAAGA
10133523 ATGAACTCCGTATGCTTAGACTGGGG
1 ATGAACTCCGTATGCTTAGACTGGGG
*
10133549 ATGAAATCCGTATGCTTAGACTGGGG
1 ATGAACTCCGTATGCTTAGACTGGGG
*
10133575 ATGAACTCTGTATGC
1 ATGAACTCCGTATGC
10133590 CTAAGTCAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.28
Consensus pattern (26 bp):
ATGAACTCCGTATGCTTAGACTGGGG
Found at i:10135729 original size:26 final size:26
Alignment explanation
Indices: 10135693--10135745 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10135683 CTGGTCTGAT
10135693 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
* * *
10135719 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
10135745 C
1 C
10135746 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:10136089 original size:26 final size:26
Alignment explanation
Indices: 10136060--10136112 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10136050 CCGGTCTGAT
10136060 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
10136086 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10136112 C
1 C
10136113 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10136597 original size:26 final size:26
Alignment explanation
Indices: 10136561--10136613 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10136551 CCGGTCCGAT
10136561 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
10136587 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10136613 C
1 C
10136614 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10143706 original size:26 final size:26
Alignment explanation
Indices: 10143677--10143729 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10143667 TCGGTCTGAT
10143677 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
* *
10143703 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
10143729 C
1 C
10143730 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:10144450 original size:26 final size:26
Alignment explanation
Indices: 10144412--10144464 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10144402 GGCTCAAAAT
10144412 CATAGACTGGGAATGAACTCCGTATG
1 CATAGACTGGGAATGAACTCCGTATG
10144438 CATAGACAT-GGAATGAACTCCGTATG
1 CATAGAC-TGGGAATGAACTCCGTATG
10144464 C
1 C
10144465 CTAAGCCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.23
Consensus pattern (26 bp):
CATAGACTGGGAATGAACTCCGTATG
Found at i:10144739 original size:159 final size:159
Alignment explanation
Indices: 10144447--10144846 Score: 365
Period size: 159 Copynumber: 2.5 Consensus size: 159
10144437 GCATAGACAT
* * * * *
10144447 GGAATGAACTCCGTATGCCTAAGCCAATCCACGAAACGAGCGTGCGGGCGTTCAGCCGGCCGGAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAG
* * * * **
10144512 AGACAGAATGCACAAGCTGAGGATCAACCCAGTCCCCCCCTGCATGCTGTTGATCCTGCTACTGC
66 AGACAGAATGCACAAGCAGAGGATCAACCCAGTCCCCCCCTGCATGCTATCGATCCCGCTACCAC
10144577 AACCCTCGGTTCAGTCTAATCTTAGACTG
131 AACCCTCGGTTCAGTCTAATCTTAGACTG
* * * *
10144606 GGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGCCGACCGAAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAG
* * * *** * ** *
10144671 AGGCATAATGCGCAAGCCAGA-GATTGGCCCAGTCCCCCTCTGTGTGCTATCGATCCCGCTGCCA
66 AGACAGAATGCACAAG-CAGAGGATCAACCCAGTCCCCCCCTGCATGCTATCGATCCCGCTACCA
* * * ***
10144735 CAACCCTC-GATCCGGCTGGGGCTTAGACAT-
130 CAACCCTCGGTTCAGTCT-AATCTTAGAC-TG
* * ** * * * * * * *
10144765 CGAATGAACTCCCTCCGCCTAAGCCAACCCATGAAACGGGCGTACGAGCGCTCAACCGACCGGAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAG
*
10144830 AGGCAGAATGCACAAGC
66 AGACAGAATGCACAAGC
10144847 CGGGGATCGA
Statistics
Matches: 192, Mismatches: 46, Indels: 7
0.78 0.19 0.03
Matches are distributed among these distances:
158 7 0.04
159 181 0.94
160 4 0.02
ACGTcount: A:0.26, C:0.31, G:0.26, T:0.17
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAG
AGACAGAATGCACAAGCAGAGGATCAACCCAGTCCCCCCCTGCATGCTATCGATCCCGCTACCAC
AACCCTCGGTTCAGTCTAATCTTAGACTG
Found at i:10145381 original size:355 final size:341
Alignment explanation
Indices: 10144597--10145391 Score: 840
Period size: 353 Copynumber: 2.3 Consensus size: 341
10144587 TCAGTCTAAT
* * *
10144597 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * ** *
10144662 CGACCGAAGAGGCATAATGCGCAAGCCAGAGATTGGCCCAGTCCCCCTCTGTGTGCTATCGATCC
66 CGACCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCAGTCCCCCTCTGTGTGCTACCGATCC
* * * * *
10144727 CGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATCGAATGAACTCCCTCCGCCTAAGCCAA
131 CGCTACCACAACCCTCGATCCAGCTAGGGCTTAGACATCGAATGAACTCCCTACACCTAAGCCAA
* **
10144792 CCCATGAAACGGGCGTACGAGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGA
196 CCCACGAAACCAGCGTACGAGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGA
* * * ** **
10144857 CTCGATCCCCCTACGTGCTGTTGATCCTATTACCGCAACCCTCGGTCTGGTCTGATTTAGACTGG
261 CACGATCCCCCTACGTGCTGTCGATCCTATTACCGCAACCCTCGATCCAGTCCAATTTAGACTGG
*
10144922 GAATGAACTCCGTTTG
326 GAATGAACTCCGTATG
* * * *** * *
10144938 GTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGTAAGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* *
10145003 CGATCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGGTCCCCTTCTACGTGCTGAAGATCC
66 CGACCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCAGTCCCC--CT-C-TG-T---G-T--
* * * * *
10145068 CGCTACCGGTCCTGCTACCACAACCTTC-AGTCCAGCTAGGGCTTAGACATGGAATGAACTCCGT
120 -GCTACCGATCCCGCTACCACAACCCTCGA-TCCAGCTAGGGCTTAGACATCGAATGAACTCCCT
* * * * * ** * **
10145132 ATACCTAAGCCAACCCACGAAACCAGCGTGCGGGTGCTTAGTCGACCGGAGAGGTAGAATGTGCA
183 ACACCTAAGCCAACCCACGAAACCAGCGTACGAGCGCTCAACCGACCGGAGAGGCAGAATGCACA
* * * * * * * * *
10145197 AGCTGGGGATCGGCACGGTCCCCCCTGCGTGCTGTCGATCTTGA-TGCTGTAACCCTTGATCCAG
248 AGCCGGGGATCGACACGAT-CCCCCTACGTGCTGTCGATCCT-ATTACCGCAACCCTCGATCCAG
*
10145261 TCCAATCTTAGATTGGGAATGAACTCCGTATG
311 TCCAAT-TTAGACTGGGAATGAACTCCGTATG
* * *
10145293 CTTGGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCCG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* *
10145357 TCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATC
65 CCGACCGGAGAGGCATAATGCGCAAGCCAGGGATC
10145392 GTCCCGATCC
Statistics
Matches: 364, Mismatches: 73, Indels: 20
0.80 0.16 0.04
Matches are distributed among these distances:
341 94 0.26
343 2 0.01
344 1 0.00
345 2 0.01
346 1 0.00
349 1 0.00
350 1 0.00
352 1 0.00
353 117 0.32
354 36 0.10
355 107 0.29
356 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (341 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGACCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCAGTCCCCCTCTGTGTGCTACCGATCC
CGCTACCACAACCCTCGATCCAGCTAGGGCTTAGACATCGAATGAACTCCCTACACCTAAGCCAA
CCCACGAAACCAGCGTACGAGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGA
CACGATCCCCCTACGTGCTGTCGATCCTATTACCGCAACCCTCGATCCAGTCCAATTTAGACTGG
GAATGAACTCCGTATG
Found at i:10145415 original size:355 final size:344
Alignment explanation
Indices: 10144597--10145415 Score: 835
Period size: 355 Copynumber: 2.3 Consensus size: 344
10144587 TCAGTCTAAT
* * *
10144597 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * *
10144662 CGACCGAAGAGGCATAATGCGCAAGCCAGAGATTGGCCC-AGTCCC-CCTC-TG-T-GTGCTATC
66 CGACCGGAGAGGCATAATGCGCAAGCCAGGGA-TCGCCCGA-TCCCTCCTCGTGCTGGTGCTACC
* * * * *
10144722 GATCCCGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATCGAATGAACTCCCTCCGCCTAA
129 GATCCCGCTACCACAACCCTCGATCCAGCTAGGGCTTAGACATCGAATGAACTCCCTACACCTAA
* **
10144787 GCCAACCCATGAAACGGGCGTACGAGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGCCGGGG
194 GCCAACCCACGAAACCAGCGTACGAGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGCCGGGG
* * * ** **
10144852 ATCGACTCGATCCCCCTACGTGCTGTTGATCCTATTACCGCAACCCTCGGTCTGGTCTGATTTAG
259 ATCGACACGATCCCCCTACGTGCTGTCGATCCTATTACCGCAACCCTCGATCCAGTCCAATTTAG
*
10144917 ACTGGGAATGAACTCCGTTTG
324 ACTGGGAATGAACTCCGTATG
* * * *** * *
10144938 GTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGTAAGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * *
10145003 CGATCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGGTCCCCTTCTACGTGCTGAAGATCC
66 CGACCGGAGAGGCATAATGCGCAAGCCAGGGATC-GCCCGAT-CCCTCCT-CGTGCTG--G-T--
* * * * *
10145068 CGCTACCGGTCCTGCTACCACAACCTTC-AGTCCAGCTAGGGCTTAGACATGGAATGAACTCCGT
123 -GCTACCGATCCCGCTACCACAACCCTCGA-TCCAGCTAGGGCTTAGACATCGAATGAACTCCCT
* * * * * ** * **
10145132 ATACCTAAGCCAACCCACGAAACCAGCGTGCGGGTGCTTAGTCGACCGGAGAGGTAGAATGTGCA
186 ACACCTAAGCCAACCCACGAAACCAGCGTACGAGCGCTCAACCGACCGGAGAGGCAGAATGCACA
* * * * * * * * *
10145197 AGCTGGGGATCGGCACGGTCCCCCCTGCGTGCTGTCGATCTTGA-TGCTGTAACCCTTGATCCAG
251 AGCCGGGGATCGACACGAT-CCCCCTACGTGCTGTCGATCCT-ATTACCGCAACCCTCGATCCAG
*
10145261 TCCAATCTTAGATTGGGAATGAACTCCGTATG
314 TCCAAT-TTAGACTGGGAATGAACTCCGTATG
* * *
10145293 CTTGGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCCG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* *
10145357 TCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGTCCCGATCCCTCCATGCGTGCTG
65 CCGACCGGAGAGGCATAATGCGCAAGCCAGGGATCG-CCCGATCCCTCC-T-CGTGCTG
10145416 TCGATCCTGT
Statistics
Matches: 381, Mismatches: 76, Indels: 28
0.79 0.16 0.06
Matches are distributed among these distances:
340 1 0.00
341 88 0.23
342 3 0.01
343 2 0.01
344 1 0.00
345 2 0.01
346 1 0.00
349 1 0.00
350 1 0.00
352 1 0.00
353 117 0.31
354 42 0.11
355 120 0.31
356 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (344 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGACCGGAGAGGCATAATGCGCAAGCCAGGGATCGCCCGATCCCTCCTCGTGCTGGTGCTACCGA
TCCCGCTACCACAACCCTCGATCCAGCTAGGGCTTAGACATCGAATGAACTCCCTACACCTAAGC
CAACCCACGAAACCAGCGTACGAGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGCCGGGGAT
CGACACGATCCCCCTACGTGCTGTCGATCCTATTACCGCAACCCTCGATCCAGTCCAATTTAGAC
TGGGAATGAACTCCGTATG
Found at i:10145721 original size:159 final size:158
Alignment explanation
Indices: 10145292--10145723 Score: 444
Period size: 159 Copynumber: 2.7 Consensus size: 158
10145282 AACTCCGTAT
* * * *
10145292 GCTTGGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCCG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGTGCTCAG
* * **
10145357 TCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGTCCCGATCCCTCC-ATGCGTGCTGTCGAT
66 TCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCG-CCCGATCCC-CCTATGCGTGCTACCGAT
* * *
10145421 CCTGTAGCCACAACCCTTGGTCTGGTCCGA
129 CCCGTAGCCACAACCCTCGGTCCGGTCCGA
* * * * * *
10145451 TCTTAGAC-TGGCAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGG-TTGCGGGTGTTG
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-GGCATGCGGGTGCTC
* * * * * * *
10145514 AGCCGACCGCAGAGGCATAATGTGCAAGTCGGGGACTGGTCCGATCCCCCTCTGCGTGCTACC-A
64 AGTCGACCGGAGAGGCAGAATGCGCAAGTCGGGGA-TCGCCCGATCCCCCTATGCGTGCTACCGA
* *
10145578 GTCCCGCT-GCCACAACCCTCGGTCCGG-CTGGG
128 -TCCCG-TAGCCACAACCCTCGGTCCGGTC-CGA
* * **
10145610 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGTGCTCAG
* * *
10145675 TCGACCGGAGAGGCAGATTACGCAAGTCGGGGATCAGCCCGGTCCCCCT
66 TCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATC-GCCCGATCCCCCT
10145724 GCATGTTGTC
Statistics
Matches: 219, Mismatches: 44, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
158 10 0.05
159 202 0.92
160 7 0.03
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGTGCTCAG
TCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGCCCGATCCCCCTATGCGTGCTACCGATCC
CGTAGCCACAACCCTCGGTCCGGTCCGA
Found at i:10145797 original size:26 final size:26
Alignment explanation
Indices: 10145768--10145820 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10145758 CTGGTCTGAT
*
10145768 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCGGTATG
* *
10145794 CTTAGATTGGGGATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCGGTATG
10145820 C
1 C
10145821 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCGGTATG
Found at i:10146526 original size:26 final size:26
Alignment explanation
Indices: 10146489--10146539 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
10146479 GCTCAAAATC
10146489 TTAGACTAGGAATGAACTCCGTATGG
1 TTAGACTAGGAATGAACTCCGTATGG
*
10146515 TTAGAC-ATGGAATGAACTTCGTATG
1 TTAGACTA-GGAATGAACTCCGTATG
10146540 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGG
Found at i:10146868 original size:159 final size:159
Alignment explanation
Indices: 10146515--10147140 Score: 739
Period size: 159 Copynumber: 4.0 Consensus size: 159
10146505 CTCCGTATGG
* * *
10146515 TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
* * * * *
10146580 AGTC-AGAGAGGCAAAATGAGCAAGCTGGGGATCGACCCGGTCCCCCT-TGCGTGCTATCGATCC
66 GGTCGAGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATCC
* * * * * *
10146643 TGCTACCATAACCCTCGGTCTGGTCT-GAT
131 CGCTACCACAACCCTCAGTC-CGACTGGGT
* * * * * * *
10146672 CTTAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCCATGAAACGAGCGTGTGGGCGCTGAG
1 -TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* *
10146736 CCGGTCGA-AGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTATCGGT
64 CCGGTCGAGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGAT
10146800 CCCGCTACCACAACCCTCAGTCCGACTAGGGT
129 CCCGCTACCACAACCCTCAGTCCGACT-GGGT
* *
10146832 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTGAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
** * * * *
10146897 GACCGA-AGAGGCATAATGCGCAAGCCGGGGATCGGCCCTGTACCCCTCCGCGTGCTA-CAGGTC
66 GGTCGAGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATC-GATC
* * *
10146960 CCACTGCCACAACCCTCAGTCCGGCTGGGGT
130 CCGCTACCACAACCCTCAGTCCGACT-GGGT
* *
10146991 TTAGACATGGAATCAACTCCCTATGCCTAAGCCAACCCACGAATCGAGCGTGCGGGCACTCAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
* * * * * *
10147056 GG-CCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCC-CTACGTGCTACCAATCC
66 GGTCGAGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATCC
* *
10147119 TGCTACCGCAACCCTCAGTCCG
131 CGCTACCACAACCCTCAGTCCG
10147141 GTCCGATCTG
Statistics
Matches: 404, Mismatches: 55, Indels: 18
0.85 0.12 0.04
Matches are distributed among these distances:
157 1 0.00
158 130 0.32
159 270 0.67
160 3 0.01
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.17
Consensus pattern (159 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
GGTCGAGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATCC
CGCTACCACAACCCTCAGTCCGACTGGGT
Found at i:10147111 original size:317 final size:317
Alignment explanation
Indices: 10146515--10147140 Score: 771
Period size: 317 Copynumber: 2.0 Consensus size: 317
10146505 CTCCGTATGG
* * *
10146515 TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
* * * * **
10146580 AGTCAGAGAGGCAAAATGAGCAAGCTGGGGATCGACCCGGTCCCCCTTGCGTGCTATCGATCCTG
66 AGACAGAGAGGCAAAATGAGCAAGCCGGGGATCGACCCGGTACCCCTCGCGTGCTATCGATCCCA
* * * * *
10146645 CTACCATAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACC
131 CTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATCAACTCCATATGCATAAGCCAACC
* * * * * *
10146710 CATGAAACGAGCGTGTGGGCGCTGAGCCGGTCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCC
196 CACGAAACGAGCGTGCGGGCACTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCC
* * **
10146775 CGATCCCCCTCTGCGTGCTATCGGTCCCGCTACCACAACCCTCAGTCCGACTAGGGT
261 CGATCCCCCTCTACGTGCTACCAATCCCGCTACCACAACCCTCAGTCCGACTAGGGT
* *
10146832 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTGAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
* * * * * *
10146897 -GACCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCTGTACCCCTCCGCGTGCTA-CAGGTC
66 AGACAG-AGAGGCAAAATGAGCAAGCCGGGGATCGACCCGGTACCCCT-CGCGTGCTATC-GATC
* * * *
10146960 CCACTGCCACAACCCTCAGTCCGG-CTGGGGT-TTAGACAT-GGAATCAACTCCCTATGCCTAAG
128 CCACTACCACAACCCTCAGTCCGGTCT--GATCTTAGAC-TGGGAATCAACTCCATATGCATAAG
*
10147022 CCAACCCACGAATCGAGCGTGCGGGCACTCAGCCGGCC-AGAGAGGCAGAATGCGCAAGCCGGGG
190 CCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGA-AGAGGCAGAATGCGCAAGCCGGGG
* * * *
10147086 ATCGGCCTGGTCCCCC-CTACGTGCTACCAATCCTGCTACCGCAACCCTCAGTCCG
254 ATCGGCCCGATCCCCCTCTACGTGCTACCAATCCCGCTACCACAACCCTCAGTCCG
10147141 GTCCGATCTG
Statistics
Matches: 261, Mismatches: 41, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
316 3 0.01
317 132 0.51
318 123 0.47
319 3 0.01
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.17
Consensus pattern (317 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
AGACAGAGAGGCAAAATGAGCAAGCCGGGGATCGACCCGGTACCCCTCGCGTGCTATCGATCCCA
CTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATCAACTCCATATGCATAAGCCAACC
CACGAAACGAGCGTGCGGGCACTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCC
CGATCCCCCTCTACGTGCTACCAATCCCGCTACCACAACCCTCAGTCCGACTAGGGT
Found at i:10147189 original size:26 final size:26
Alignment explanation
Indices: 10147151--10147200 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
10147141 GTCCGATCTG
10147151 AGACTAGGAATGAACTTCGTATGCTT
1 AGACTAGGAATGAACTTCGTATGCTT
* *
10147177 AGACTGGGGATGAACTTCGTATGC
1 AGACTAGGAATGAACTTCGTATGC
10147201 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (26 bp):
AGACTAGGAATGAACTTCGTATGCTT
Found at i:10147714 original size:26 final size:26
Alignment explanation
Indices: 10147685--10147737 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10147675 CCGGTTCGAT
10147685 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10147711 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10147737 C
1 C
10147738 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10147896 original size:185 final size:184
Alignment explanation
Indices: 10147526--10147896 Score: 447
Period size: 184 Copynumber: 2.0 Consensus size: 184
10147516 TCTGGTTGGG
* *
10147526 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACAGACGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGACGTACGGGCGCACAA
* * * * ****
10147591 CCTACCAGAGAGGCAGAATGCGCAAGCCAAGGATCGGTTCGGTCCCTCCTACATGCTGTTGATCC
66 CCGACCAGAGAGACAGAATGCACAAGCCAAGGACCAACACGGTCCCTCCTACATGCTGTTGATCC
* * * ** *
10147656 TACTGCCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTAT
131 TACTACCGCAACCCTCAGTCCGGTCCGATCTTAGACCAGAAATGAACTCCGTAT
* * * * *
10147710 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-GAGCGTGCGGGTGCACA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGA-CGTACGGGCGCACA
* * * * * * *
10147774 ACCGGCCGGAGAGACAGAATGCACAAGCTAGGGACCAACACGGTCCCCTCTTGCGTGCTGTTGAT
65 ACCGACCAGAGAGACAGAATGCACAAGCCAAGGACCAACACGGT-CCCTCCTACATGCTGTTGAT
* *
10147839 CCTACTACCGCAACCCTCAGTTCGGTCCGATCTTAGACCAGAAATGAACTTCGTAT
129 CCTACTACCGCAACCCTCAGTCCGGTCCGATCTTAGACCAGAAATGAACTCCGTAT
10147895 GC
1 GC
10147897 CTAAGTCAAC
Statistics
Matches: 155, Mismatches: 30, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
183 2 0.01
184 86 0.55
185 67 0.43
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGACGTACGGGCGCACAA
CCGACCAGAGAGACAGAATGCACAAGCCAAGGACCAACACGGTCCCTCCTACATGCTGTTGATCC
TACTACCGCAACCCTCAGTCCGGTCCGATCTTAGACCAGAAATGAACTCCGTAT
Found at i:10148168 original size:157 final size:156
Alignment explanation
Indices: 10147710--10148210 Score: 465
Period size: 157 Copynumber: 3.2 Consensus size: 156
10147700 AACTCCGTAT
* * *
10147710 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCACAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CCATGAAACGAGCGTGCGGGCGCTCAA
* * * * *
10147775 CCGGCCGGAGAGACAGAATGCACAAGCTAGGGACCAACACGGTCCCCTCTTGCGTGCTGTTGATC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCAACCCGGTCCCC-CTTGCGTGCTGTTGATC
* * * *
10147840 CTACTACCGCAACCCTCAGTTCGGTCCGA
129 CTACTGCCGCAACCCTCGGTTCGAT-TGA
* * * * * * *
10147869 TCTTAGACCA-GAAATGAACTTCGTATGCCTAAGTCAACCAACGAAATGAGCGTGC-GGCGCTGA
1 GCTTAGA-CATGGAATGAACTCCGTATGCCTAAGCCAACC-ATGAAACGAGCGTGCGGGCGCTCA
* * * * *** * *
10147932 ACCGACCGGAGAGGCACAATGCGTAAGCTGAGGATCGGTCCGGTCCCCCTCTGCATGCTGTCG-T
64 ACCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCAACCCGGTCCCCCT-TGCGTGCTGTTGAT
* * * *
10147996 CCCACTGCCACAACCCTCGGTCCGATTGGG
128 CCTACTGCCGCAACCCTCGGTTCGATT-GA
*
10148026 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAATCCATGAAACG-G-GTGTCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CCATGAAACGAGCGTG-CGGGCGCTCA
* * * * *
10148089 GCCGGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCAACCCGATCCCCCTTACGTGCTATTGATC
64 ACCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCAACCCGGTCCCCCTTGCGTGCTGTTGATC
* * * *
10148154 CTGCTGCTGTAACCCTCGATTCGATCTGA
129 CTACTGCCGCAACCCTCGGTTCGAT-TGA
* *
10148183 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
10148211 TTGGACTGGG
Statistics
Matches: 267, Mismatches: 64, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
155 3 0.01
156 13 0.05
157 151 0.57
158 56 0.21
159 43 0.16
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCATGAAACGAGCGTGCGGGCGCTCAAC
CGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCAACCCGGTCCCCCTTGCGTGCTGTTGATCCT
ACTGCCGCAACCCTCGGTTCGATTGA
Found at i:10148879 original size:464 final size:462
Alignment explanation
Indices: 10147973--10148892 Score: 1292
Period size: 464 Copynumber: 2.0 Consensus size: 462
10147963 GGATCGGTCC
*
10147973 GGTCCCCCTCTGCATGCTGTCGTCCCACTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGG
1 GGTCCCCCTCTGCATGCTGTCGTCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGG
* * * * *
10148038 AATGAACTCCCTATGCCTAAGCCAATCCATGAAACGGGTGTCGGGCGCTCAGCCGGCCGAAGAGG
66 AATGAACTCACTATACCTAAGCCAACCCATGAAACGGGTGTCGGGCACTCAGCCGACCGAAGAGG
* * * ** * * ***
10148103 CAGAATGCGCAAGCTGGGGATCAACCCGATCCCCCTTACGTGCTATTGATCCTGCTGCTGTAACC
131 CAAAATACACAAGCCAGGGATCAACCCGATCCCCCTTACATGCTATCGATCCTGCTGCCACAACC
*
10148168 CTCGATTCGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTGGACTGGGGATGAAGTTCGT
196 CTCGATTCGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAAGTTCGT
* * *
10148233 ATGCCTCAGTCAACCCATGAAACGAGCGTGCGGATGCTCAGCCGACCAAACAGGCAGGATAAGCA
261 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGATGATCAGCCGACCAAACAGGCAGGATAAGCA
* * *
10148298 AGCCGGGGATCAAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTTTGCCGTGCCAATGC
326 AGCCGAGGATCAAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGC
10148363 CATTTTTATGGCTTGTAAATTCACACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAG
391 CATTTTTATGGCTTGTAAATTCACACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAG
10148428 ATGACCT
456 ATGACCT
* * * * * *
10148435 GGTCCCCCTCTGCGTGCTGTTGGTCCCGCTGCTACAACCCTCGGTCTGGCTGGGGCTTAGACATG
1 GGTCCCCCTCTGCATGCTG-TCGTCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATG
* *
10148500 GAATGAACTCACTATACCTAAGCCAACCCATGAAACGGACGTG-CGGGCACTCAGCCGATCGGAG
65 GAATGAACTCACTATACCTAAGCCAACCCATGAAACGG--GTGTCGGGCACTCAGCCGACCGAAG
* * *
10148564 AGGCAAAATACACAAGCCAGGGATCAACCC-AGTCCCTCTTGCATGCTGTCGATCCTGCTGCCAC
128 AGGCAAAATACACAAGCCAGGGATCAACCCGA-TCCCCCTTACATGCTATCGATCCTGCTGCCAC
** *
10148628 AACCCTC--TGTCTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATG-G
192 AACCCTCGAT-TC-GATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAA
* * * * * *
10148690 GCTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGATTAGCCGACCAGAGAGGTAGG
255 G-TTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGATGATCAGCCGACCAAACAGGCAGG
** * * *
10148755 ATGCGTAAGCCGAGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTTATATTTCTGCCATG
319 ATAAGCAAGCCGAGGATCAAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCATG
* *
10148820 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCTTGTGAAGTTTCG
384 CCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCG
10148885 TGGCAAGA
449 TGGCAAGA
10148893 CAACCCGTTT
Statistics
Matches: 401, Mismatches: 50, Indels: 12
0.87 0.11 0.03
Matches are distributed among these distances:
462 19 0.05
463 78 0.19
464 301 0.75
465 3 0.01
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.24
Consensus pattern (462 bp):
GGTCCCCCTCTGCATGCTGTCGTCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGG
AATGAACTCACTATACCTAAGCCAACCCATGAAACGGGTGTCGGGCACTCAGCCGACCGAAGAGG
CAAAATACACAAGCCAGGGATCAACCCGATCCCCCTTACATGCTATCGATCCTGCTGCCACAACC
CTCGATTCGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAAGTTCGT
ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGATGATCAGCCGACCAAACAGGCAGGATAAGCA
AGCCGAGGATCAAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGC
CATTTTTATGGCTTGTAAATTCACACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAG
ATGACCT
Found at i:10149798 original size:158 final size:158
Alignment explanation
Indices: 10149405--10150014 Score: 468
Period size: 158 Copynumber: 3.8 Consensus size: 158
10149395 AACTCCGTAT
* * * * * * * *
10149405 GCTTTGACATGGAATGAACTCCGTATGCCTCAGCCAATCCACGAAACGAGCGTGCAGGTGCGCAA
1 GCTTAGACGTGGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
** ** * * * *** ** * * *
10149470 CCGGCTGGAGAGGCAGAATGTGTAAGTCGAGGATCGGCTCAATTCCCATCTTCGTGCTATCGGTC
66 CCGGCCAGAGAGGCAGAATACGCAAGCCGAGGATCAGC-CCGGTCCCCCCTACGTGCTGTCGATC
* * *
10149535 CCGCTGCCACAACCCTCGGTCCGGTTGGG
130 CTGCTACCACAACCCTCGATCCGGTTGGG
* * * * * * *
10149564 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACACACGAAACGGGCGTGCGGGCGCTTAG
1 GCTTAGACGTGGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * *
10149629 TCGACCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCC
66 CCGGCCAGAGAGGCAGAATACGCAAGCCGAGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCC
* * * *
10149694 TGCTACTGA-AACCCTCGATCTGGTTCGA
131 TGCTAC-CACAACCCTCGATCCGGTTGGG
* *
10149722 TCTTAGA-GTGGGAATCAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACGT-GGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
10149786 ACCGGCCAGAGAGGTAAGCCAGAGAGGCATAATGCGTAAGTCGCGGATCAGCCCGGT----CC--
65 ACCGGCCAGAGA-G---G-C--AGA---AT-A--CGCAAGCCGAGGATCAGCCCGGTCCCCCCTA
* * **
10149845 C--GCTGCCGATCCTGCTACCACAGCCCTCGATCCGACTGGG
117 CGTGCTGTCGATCCTGCTACCACAACCCTCGATCCGGTTGGG
*
10149885 GCTTAGACGTGGAA-CAAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
1 GCTTAGACGTGGAATC-AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
10149949 GCCGGCTAGAGAGGCAGAATGCACAAGCTGGGGATCAGCCCGATCCCCCCTACGTGCTGTCGATC
65 ACCGGCCAGAGAGGCAGAATACGCAAGCCGAGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATC
10150014 C
130 C
10150015 CCGCATGGTC
Statistics
Matches: 355, Mismatches: 70, Indels: 53
0.74 0.15 0.11
Matches are distributed among these distances:
150 17 0.05
153 2 0.01
154 2 0.01
156 4 0.01
157 1 0.00
158 111 0.31
159 88 0.25
162 4 0.01
163 96 0.27
164 2 0.01
165 4 0.01
167 2 0.01
168 2 0.01
169 1 0.00
171 19 0.05
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACGTGGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGGCCAGAGAGGCAGAATACGCAAGCCGAGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCC
TGCTACCACAACCCTCGATCCGGTTGGG
Found at i:10151359 original size:159 final size:158
Alignment explanation
Indices: 10150847--10151422 Score: 557
Period size: 159 Copynumber: 3.6 Consensus size: 158
10150837 AACTCCATAT
* * * * * *
10150847 GCTTAGGCATGGAATGAACTCTGTATGCCAAAGCCAACCCACGAAACGAGCATGCGGCCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
10150912 TCGGTCGAACAGGTAGAATGCGCAAGTCGGGGACCGATCTGGTCCCAGC-CTACATGCTGTCAAT
66 CCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCG-GCTGGTCCC-CCTCTACGTGCTGTCGAT
* * ** *
10150976 C-CTGCTGCCACAACCCTTGGTCTGGTCCGA
129 CTC-GCTGCCACAACCCTCGGTCCGGTTAGG
* * * *
10151006 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * *** * *
10151070 GCTGGCCAGAGAGGCATAATGTGCAAGCCGGGGATCGGCCCATCCCCCTCTACGTGTTGTCGGTC
65 GCCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCTGGTCCCCCTCTACGTGCTGTCGATC
* *
10151135 TCGCTGCCACAACCATCGGTCCGGCTAGG
130 TCGCTGCCACAACCCTCGGTCCGGTTAGG
* * *
10151164 GCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
10151229 CCGGTCGGAGAGGTAGAATACGCAAGCCGAGGATCGGCATGGTCCCCTTCTACGTGCTGCCGATC
66 CCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGC-TGGTCCCCCTCTACGTGCTGTCGATC
** *
10151294 TCGCTATCACAACCCTCGGTCCGGTTGGG
130 TCGCTGCCACAACCCTCGGTCCGGTTAGG
* * * * * * *
10151323 GCTTAGACATGGAATGAACTCCATATGCCTACGCCAACCCATGAAATGGGTGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
10151388 -CTGACTGGAGAGGTAGAATGCGCAAGCCAGGGATC
66 CCGGTC-GGAGAGGTAGAATGCGCAAGCCGGGGATC
10151423 AATCCGGTCC
Statistics
Matches: 335, Mismatches: 76, Indels: 12
0.79 0.18 0.03
Matches are distributed among these distances:
157 1 0.00
158 128 0.38
159 206 0.61
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCTGGTCCCCCTCTACGTGCTGTCGATCT
CGCTGCCACAACCCTCGGTCCGGTTAGG
Found at i:10151730 original size:26 final size:26
Alignment explanation
Indices: 10151679--10151731 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10151669 CCGGTCTGAT
*
10151679 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCACTATG
*
10151705 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCACTATG
10151731 C
1 C
10151732 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCACTATG
Found at i:10151733 original size:197 final size:197
Alignment explanation
Indices: 10151395--10151780 Score: 504
Period size: 197 Copynumber: 2.0 Consensus size: 197
10151385 CAGCTGACTG
* * * * * *
10151395 GAGAGGTAGAATGCGCAAGCCAGGGATCAATCCGGTCCCCCCTGCGTGCTATCGATCCTACTGTC
1 GAGAGGTAAAATGCGCAAGCCAGGGATCAACCCGATCCCCCCTACATGCTATCGATCCTACTGCC
* * * * *
10151460 GCAACCCCCGGTCCGATCCGATCTTAGACTGGGAATGAATTCCGTATGCTTGGACTGGGGATGAA
66 ACAACCCCCGGTCCGATCCGATCTTAGACTGGGAATGAACTCAGTATGCTTAGACTGGGAATGAA
* * * *
10151525 CTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAACCGACCGGAGAGGCCGGT
131 CTCCCTATGCCTAAGCCAACCCACAAAACAAGCGTGCGAGTGCTCAACCGACCGGAGAGGCCGGT
10151590 CA
196 CA
* * * * *
10151592 GAGAGGTAAAATGTGCAAGTCAGGGATTAACCCGATCCCCCCTACATGCTGTCGATCCTGCTGCC
1 GAGAGGTAAAATGCGCAAGCCAGGGATCAACCCGATCCCCCCTACATGCTATCGATCCTACTGCC
* * *
10151657 ACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCAGTATGCTTAGACAT-GGAATGA
66 ACAACCCCCGGTCCGATCCGATCTTAGACTGGGAATGAACTCAGTATGCTTAGAC-TGGGAATGA
* * * * *
10151721 ACTCCCTATGCCTAAGCCAACCCATAAAATAGGCGTGCGAGTGCTCAGCCGACTGGAGAG
130 ACTCCCTATGCCTAAGCCAACCCACAAAACAAGCGTGCGAGTGCTCAACCGACCGGAGAG
10151781 ATAGAATGTG
Statistics
Matches: 160, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
197 159 0.99
198 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (197 bp):
GAGAGGTAAAATGCGCAAGCCAGGGATCAACCCGATCCCCCCTACATGCTATCGATCCTACTGCC
ACAACCCCCGGTCCGATCCGATCTTAGACTGGGAATGAACTCAGTATGCTTAGACTGGGAATGAA
CTCCCTATGCCTAAGCCAACCCACAAAACAAGCGTGCGAGTGCTCAACCGACCGGAGAGGCCGGT
CA
Found at i:10152749 original size:26 final size:26
Alignment explanation
Indices: 10152713--10152765 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10152703 CTGATCCAAT
*
10152713 CTTATACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
* *
10152739 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACACCGTATG
10152765 C
1 C
10152766 CCTAAGTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:10153793 original size:155 final size:159
Alignment explanation
Indices: 10153460--10153801 Score: 372
Period size: 155 Copynumber: 2.2 Consensus size: 159
10153450 AACTCCGTAT
* *
10153460 GCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAA
** * ** * * *
10153525 CCAGCCGGAGACGTAGAATGTGCAAGCCGGGGATTGACCCGATCCCCCTCTATGTGCTGTCGATC
66 CCAGCCGGAGACGTAGAATGCACAAGCCCGGGACCGACCCGATCCCCCTCTACGAGCTATCGATC
*
10153590 CCACTGTCACAACCCTCAGTCCGGCTAAG
131 CCACTATCACAACCCTCAGTCCGGCTAAG
* * * *
10153619 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAA
* * * * *
10153683 CGA-CTGGAGAGGTAGAATGCACAAGCCCGGGACCGACCCGGT-CCCCTC-GCGAGCTATCGATC
66 CCAGCCGGAGACGTAGAATGCACAAGCCCGGGACCGACCCGATCCCCCTCTACGAGCTATCGATC
** ** * * *
10153745 CTGCTATCGTAACCCTCGGTCCGATCTGA-
131 CCACTATCACAACCCTCAGTCCG-GCTAAG
*
10153774 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
10153802 TTAGAGTGGG
Statistics
Matches: 153, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
154 1 0.01
155 51 0.33
156 9 0.06
157 31 0.20
158 15 0.10
159 46 0.30
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAA
CCAGCCGGAGACGTAGAATGCACAAGCCCGGGACCGACCCGATCCCCCTCTACGAGCTATCGATC
CCACTATCACAACCCTCAGTCCGGCTAAG
Found at i:10153811 original size:26 final size:26
Alignment explanation
Indices: 10153775--10153827 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10153765 CCGATCTGAT
10153775 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
10153801 CTTAGAGTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10153827 C
1 C
10153828 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10155027 original size:26 final size:26
Alignment explanation
Indices: 10154976--10155028 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10154966 CCTGTCTGAT
* *
10154976 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
10155002 CTTAGACT-GGCAATGAACTCCATATG
1 CTTAGACTAGG-AATGAACTCCATATG
10155028 C
1 C
10155029 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:10156081 original size:26 final size:26
Alignment explanation
Indices: 10156052--10156104 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10156042 CCGATCCGAT
10156052 CTTAGAC-TGGAAATAAACTCCGTATG
1 CTTAGACATGG-AATAAACTCCGTATG
* *
10156078 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATAAACTCCGTATG
10156104 C
1 C
10156105 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:10156583 original size:26 final size:26
Alignment explanation
Indices: 10156554--10156606 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10156544 CCGGTCCAAT
10156554 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
10156580 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
10156606 C
1 C
10156607 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:10156830 original size:502 final size:509
Alignment explanation
Indices: 10155733--10156841 Score: 1133
Period size: 502 Copynumber: 2.2 Consensus size: 509
10155723 CTTAGGCATG
* ** * * * *
10155733 GAATGAACTCCGTATGCCTAATCCAACCCGCGAAATGAGCATACGGACTCTCAGCCGGCCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCGCTCAGCCGACCGGAGA
* * * * * * *
10155798 GGCAGAATGCGCAAGTCGGGGAT-TGACCCAGTCTCCCTCTACGTGCTGCCAGTCCAGCTGCCCC
66 GGCAGAATGCGTAAGCCGGGGATCCGACCCAGTCCCCCTCTACGTGCTACCAATCCAGCTGCCAC
* *
10155862 AACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
131 AACCCTCAGTCAGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
* * * * * ** * * *
10155927 CGGGTGTATGGGCTCTCAACCGGTCGGAGAGGTAGAATGCGCAAGCCGAGGATCAGCCCGATCCC
196 CGGGCGTACGAGCACTCAACCGCTCAAAGAGGCAAAATGCGCAAGCCGAGGATCAGACCGATCCC
* * * *
10155992 CCCTGCGTGCTGCCTATCCTGCTACTGGTCTTGCTGTTGAAACCCTCGGTCCGATCCGATCTTAG
261 CCCT-CATGCTGCCTATCCTGC-A---GTCCTGCTGTTCAAACCCTCGGTCCGATCCAATCTTAG
*
10156057 ACTGGAAATAAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAA
321 ACTGGAAATAAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * * * * *
10156122 ACGAGCGGGCGGGCACTCAGTAGGCTGGAGAGGTAGAATGCGTAAGCTGAGGATCGACCCGATCC
386 ACGAGCGGGCAGGCACTCAG-ACGATGAAAAGGCAGAATGCGCAAGCTGAGGATCGACCCGATCC
* ** ** ** * * * *
10156187 CCACCTGTGTGCTGTCGATCCTGCTACCGTAACCTTCGGTTTGGTCCGATCTTAGATTGG
450 CCACCTGCGTGCTACCGATCCCACTACCACAACCATCGGTCTGGTCCGAGCTTAGATTGA
* * * * * * * * *
10156247 GAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGTTGAACCGACCAGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCGCTCAGCCGACCGGAGA
* * *
10156312 GGTATAATGCGTAAGCCGGGGATCCG-TCCAGTCCCCCTCTACGTGCTACCAATCCCA-CTGCCA
66 GGCAGAATGCGTAAGCCGGGGATCCGACCCAGTCCCCCTCTACGTGCTACCAAT-CCAGCTGCCA
* *
10156375 CAACCCTCAGTCTAG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATTA
130 CAACCCTCAGTC-AGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
* * *
10156439 AACGGGCGTACGAGCACTCAGCCGACT-AAAGAGGCAAAATGCGTAAGCCGAGGATCAGACCGGT
194 AACGGGCGTACGAGCACTCAACCG-CTCAAAGAGGCAAAATGCGCAAGCCGAGGATCAGACCGAT
* * *
10156503 CCCCCCT-ATG-TG-CTA-CC-G-A-TCCTGCTG-TCACAAGCCTTGGTCCGGTCCAATCTTAGA
258 CCCCCCTCATGCTGCCTATCCTGCAGTCCTGCTGTTCA-AACCCTCGGTCCGATCCAATCTTAGA
* * * **
10156560 CTGGGAATAAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACTGACGAA
322 CTGGAAATAAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * * * *
10156624 ACGAGTGTGCAGGTACTCA-ACCGATCGAAAAGGCAGAATGTGCAAGCTGGGGA-CTGACCCGGT
386 ACGAGCGGGCAGGCACTCAGA-CGAT-GAAAAGGCAGAATGCGCAAGCTGAGGATC-GACCCGAT
* * *
10156687 CCCC-CTCTGCGTGCTACCGATCCCACTGCCACAACCATCGGTCTGG-CTGGGGCTTAGATAT-A
448 CCCCAC-CTGCGTGCTACCGATCCCACTACCACAACCATCGGTCTGGTC-CGAGCTTAGAT-TGA
* * *
10156749 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATACGGGCGCTCAGCTGACCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCGCTCAGCCGACCGGAGA
* *
10156814 GGCAGAATGTGTAAGCCGAGGAT-CGACC
66 GGCAGAATGCGTAAGCCGGGGATCCGACC
10156842 TGATCCCCCC
Statistics
Matches: 482, Mismatches: 100, Indels: 38
0.78 0.16 0.06
Matches are distributed among these distances:
500 1 0.00
501 10 0.02
502 243 0.50
503 1 0.00
506 1 0.00
508 1 0.00
509 2 0.00
510 3 0.01
511 2 0.00
512 2 0.00
514 210 0.44
515 6 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (509 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCGCTCAGCCGACCGGAGA
GGCAGAATGCGTAAGCCGGGGATCCGACCCAGTCCCCCTCTACGTGCTACCAATCCAGCTGCCAC
AACCCTCAGTCAGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
CGGGCGTACGAGCACTCAACCGCTCAAAGAGGCAAAATGCGCAAGCCGAGGATCAGACCGATCCC
CCCTCATGCTGCCTATCCTGCAGTCCTGCTGTTCAAACCCTCGGTCCGATCCAATCTTAGACTGG
AAATAAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG
CGGGCAGGCACTCAGACGATGAAAAGGCAGAATGCGCAAGCTGAGGATCGACCCGATCCCCACCT
GCGTGCTACCGATCCCACTACCACAACCATCGGTCTGGTCCGAGCTTAGATTGA
Found at i:10157043 original size:343 final size:342
Alignment explanation
Indices: 10156237--10157052 Score: 971
Period size: 343 Copynumber: 2.4 Consensus size: 342
10156227 TTGGTCCGAT
* * * * * *
10156237 CTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGTTGAAC
1 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGTGCTCAAC
* * * * * * * * *
10156302 CGACCAGAGAGGTATAATGCGTAAGCCGGGGATCCG-TCCAGTCCCCCTCTACGTGCTACCAATC
65 CGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCTCGA-TCCCCCTCTGCGTGCTACCGATC
* *
10156366 CCACTGCCACAACCCTCAGTCTAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
129 CCACTGCCACAACCATCAGTCTAGCTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCA
* * *
10156431 ACCCATTAAACGGGCGTACGAGCACTCAGCCGACTAAAGAGGCAAAATGCGTAAGCCGAGGATCA
194 ACCCATGAAACGGGCATACGAGCACTCAGCCGACCAAAGAGGCAAAATGCGTAAGCCGAGGATCA
* * * *
10156496 GACCGGTCCCCCCTATGTGCTACCGATCCTGCTGTCACAAGCCTTGGTCCGGTCCAATCTTAGAC
259 GACCGATCCCCCCTATGTGCTACCGATCCAGCTGCCACAAGCCTTGGTCCAGTCCAATCTTAGAC
*
10156561 TGGGAATAAACTCCGTATG
324 AGGGAATAAACTCCGTATG
* ** * *
10156580 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACTGACGAAACGAGTGTGCAGGTACTCAAC
1 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGTGCTCAAC
* * * * * * *
10156645 CGATCGAAAAGGCAGAATGTGCAAGCTGGGGA-CTGACCCGGTCCCCCTCTGCGTGCTACCGATC
65 CGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCAG-CTCGATCCCCCTCTGCGTGCTACCGATC
* * *
10156709 CCACTGCCACAACCATCGGTCTGGCTGGGGCTTAGATATAGAATGAACTCCCTATGCCTAAGCCA
129 CCACTGCCACAACCATCAGTCTAGCTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCA
* * * ** * *
10156774 ACCCATGAAACGGGCATACGGGCGCTCAGCTGACCGGAGAGGCAGAATGTGTAAGCCGAGGATC-
194 ACCCATGAAACGGGCATACGAGCACTCAGCCGACCAAAGAGGCAAAATGCGTAAGCCGAGGATCA
** *
10156838 GACCTGATCCCCCCTGA-GTGCTGTCGATCCAGCCT-CCGCAA-CCTTTGGTCCAGTCCAATCTT
259 GACC-GATCCCCCCT-ATGTGCTACCGATCCAG-CTGCCACAAGCC-TTGGTCCAGTCCAATCTT
* *
10156900 AGACAGGGAATGAACTCTGTATG
320 AGACAGGGAATAAACTCCGTATG
* * *
10156923 CTTATACTGGGGATGTACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGATGCTCAGC
1 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG-TGCTCAAC
* * *
10156988 CGACCGGAGAGGCAGGATGTGCAAGCCGAGGATCAGCTCGAT-CCCCTCATGCGTGCTACTGATC
65 CGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCTCGATCCCCCTC-TGCGTGCTACCGATC
10157052 C
129 C
10157053 TGCTGTTGGT
Statistics
Matches: 394, Mismatches: 70, Indels: 18
0.82 0.15 0.04
Matches are distributed among these distances:
342 16 0.04
343 372 0.94
344 6 0.02
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (342 bp):
CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTGCTCAACC
GACCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCTCGATCCCCCTCTGCGTGCTACCGATCCC
ACTGCCACAACCATCAGTCTAGCTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAAC
CCATGAAACGGGCATACGAGCACTCAGCCGACCAAAGAGGCAAAATGCGTAAGCCGAGGATCAGA
CCGATCCCCCCTATGTGCTACCGATCCAGCTGCCACAAGCCTTGGTCCAGTCCAATCTTAGACAG
GGAATAAACTCCGTATG
Found at i:10157123 original size:25 final size:26
Alignment explanation
Indices: 10157094--10157145 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10157084 CCGATCCGAT
*
10157094 CTTAGAC-TGGAATGAAGTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10157119 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10157145 C
1 C
10157146 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10157590 original size:26 final size:26
Alignment explanation
Indices: 10157561--10157613 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10157551 CCGGTCCGAT
10157561 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
10157587 CTTAGACTGGGGTTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10157613 C
1 C
10157614 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10157950 original size:164 final size:163
Alignment explanation
Indices: 10157725--10158284 Score: 575
Period size: 164 Copynumber: 3.4 Consensus size: 163
10157715 CCCACTGCCA
**
10157725 CAACCCTCAGTCTGG-CTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGA
1 CAACCCTCAGTCTGGTCT-GATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGA
* * *
10157789 AACAAGCGTGCCGGCACTCAACCGATCGGGGAGGCAGAATGCGCAAGCCTACGATCGACCCGGTC
65 AACGAGCGTGCCGGCACTCAACCGGTCGGGGAGGCAGAATGCGCAAGCC-ACGACCGACCCGGTC
10157854 CCGGTCCCCCCTGCGTGTTGTCGATCCTGCTACCG
129 CCGGTCCCCCCTGCGTGTTGTCGATCCTGCTACCG
* * ** *
10157889 TAACCTTCAGT-TCGGTCTGATCTTAGAC-TGGGAATGAACTTTGTATGCCTAAGTCAACCCATG
1 CAACCCTCAGTCT-GGTCTGATCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATG
* * * * * * * * * ** *
10157952 AAACGAGCGTTCGGGTACTGAGCCGGTCGGAGAGGTATAATGCGTAAG-C-CG-GGGATCC-G-C
64 AAACGAGCGTGCCGGCACTCAACCGGTCGGGGAGGCAGAATGCGCAAGCCACGACCGACCCGGTC
* * * ** * ** * *
10158012 CCGATCCCCCTCTACGTGCTACCGGTCCCACTGCCA
129 CCGGTCCCCC-CTGCGTGTTGTCGATCCTGCTACCG
**
10158048 CAACCCTCAGTCTGG-CTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGA
1 CAACCCTCAGTCTGGTCT-GATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGA
*
10158112 AACGAGCGTGCCGGCACTCAACCGGTCGGGGAGGCAGAATGCACAAGCCGACGACCGACCCGGTC
65 AACGAGCGTGCCGGCACTCAACCGGTCGGGGAGGCAGAATGCGCAAGCC-ACGACCGACCCGGTC
*
10158177 CCGGTCCCTCCTGCGTGTTGTCGATCCTGCTACCG
129 CCGGTCCCCCCTGCGTGTTGTCGATCCTGCTACCG
* * * * * *
10158212 CAACCCTC-GATCTGGTCCGATCTTAAAC-TGGGAATGAACTTCGTACGCCTAAGTCAACCCACG
1 CAACCCTCAG-TCTGGTCTGATCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATG
*
10158275 AAATGAGCGT
64 AAACGAGCGT
10158285 ACGGGCGCTG
Statistics
Matches: 309, Mismatches: 71, Indels: 32
0.75 0.17 0.08
Matches are distributed among these distances:
158 12 0.04
159 104 0.34
160 7 0.02
161 2 0.01
162 2 0.01
163 9 0.03
164 161 0.52
165 12 0.04
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (163 bp):
CAACCCTCAGTCTGGTCTGATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
ACGAGCGTGCCGGCACTCAACCGGTCGGGGAGGCAGAATGCGCAAGCCACGACCGACCCGGTCCC
GGTCCCCCCTGCGTGTTGTCGATCCTGCTACCG
Found at i:10158100 original size:159 final size:159
Alignment explanation
Indices: 10157600--10158537 Score: 800
Period size: 159 Copynumber: 5.8 Consensus size: 159
10157590 AGACTGGGGT
* ** * *
10157600 TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGTGCTGAGCCGGTCGGAGAGGT
1 TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAGCCGATCGGAGAGGC
* * * ** **
10157665 ATAATGCGTAAGCCGGGGATCCGCCCGATCCCCCTCTACGTGCTACCGGTCCCACTGCCACAACC
66 AGAATGCGCAAGCCGGGGATCCGCCCGATCCCCCTCTGCGTGCTGTCGGTCCTGCTGCCACAACC
10157730 CTCAGTCTGGCTGGGGCTTAGACATGGAA
131 CTCAGTCTGGCTGGGGCTTAGACATGGAA
* * * * *
10157759 TGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCCGGCACTCAACCGATCGGGGAGGC
1 TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAGCCGATCGGAGAGGC
** * * * * *
10157824 AGAATGCGCAAGCCTACGATCGACCCGGTCCCGGTCCCCC-CTGCGTGTTGTCGATCCTGCTACC
66 AGAATGCGCAAG-C--CG-GGGATCC-G-CCCGATCCCCCTCTGCGTGCTGTCGGTCCTGCTGCC
** * **
10157888 GTAACCTTCAGT-TCGGTCT-GATCTTAGAC-TGGGAA
125 ACAACCCTCAGTCT-GG-CTGGGGCTTAGACAT-GGAA
** * * * * *
10157923 TGAACTTTGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTACTGAGCCGGTCGGAGAGGT
1 TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAGCCGATCGGAGAGGC
* * * ** **
10157988 ATAATGCGTAAGCCGGGGATCCGCCCGATCCCCCTCTACGTGCTACCGGTCCCACTGCCACAACC
66 AGAATGCGCAAGCCGGGGATCCGCCCGATCCCCCTCTGCGTGCTGTCGGTCCTGCTGCCACAACC
10158053 CTCAGTCTGGCTGGGGCTTAGACATGGAA
131 CTCAGTCTGGCTGGGGCTTAGACATGGAA
* * * * *
10158082 TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCCGGCACTCAACCGGTCGGGGAGGC
1 TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAGCCGATCGGAGAGGC
* ** * * * *
10158147 AGAATGCACAAGCCGACGA-CCGACCCGGTCCCGGTCCCTCCTGCGTGTTGTCGATCCTGCTACC
66 AGAATGCGCAAGCCGGGGATCCG-CCCGAT-CC---CCCT-CTGCGTGCTGTCGGTCCTGCTGCC
* * ** *
10158211 GCAACCCTC-GATCTGG-TCCGATCTTAAAC-TGGGAA
125 ACAACCCTCAG-TCTGGCT-GGGGCTTAGACAT-GGAA
* * * * * * * * *
10158246 TGAACTTCGTACGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAGTCGACCGGAGAGGC
1 TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAGCCGATCGGAGAGGC
* * * *
10158311 ATAATGTGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCAGTCCTGCTGCCACAACC
66 AGAATGCGCAAGCCGGGGATCCGCCCGATCCCCCTCTGCGTGCTGTCGGTCCTGCTGCCACAACC
* *
10158376 CTCGGTAC-GGCTGGGGCTTCGACATGGAA
131 CTCAGT-CTGGCTGGGGCTTAGACATGGAA
* * * * * * *
10158405 TGAACTCCCTATGCCTAAGCCAACCTACGAAAC-AGGCGTGCGAGCGCTTAGCCGACCGGAGAGG
1 TGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTGCGGGCACTGAGCCGATCGGAGAGG
* ** * * * * *
10158469 TAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCC-CATGCGTGCTGTCGATCCTACTGTCGCAA
65 CAGAATGCGCAAGCCGGGGATCCGCCCGATCCCCCTC-TGCGTGCTGTCGGTCCTGCTGCCACAA
10158533 CCCTC
129 CCCTC
10158538 GATCCAGTCC
Statistics
Matches: 609, Mismatches: 141, Indels: 58
0.75 0.17 0.07
Matches are distributed among these distances:
158 17 0.03
159 328 0.54
160 17 0.03
161 2 0.00
162 2 0.00
163 16 0.03
164 213 0.35
165 14 0.02
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (159 bp):
TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAGCCGATCGGAGAGGC
AGAATGCGCAAGCCGGGGATCCGCCCGATCCCCCTCTGCGTGCTGTCGGTCCTGCTGCCACAACC
CTCAGTCTGGCTGGGGCTTAGACATGGAA
Found at i:10158175 original size:323 final size:323
Alignment explanation
Indices: 10157587--10158577 Score: 1334
Period size: 323 Copynumber: 3.1 Consensus size: 323
10157577 ACTCCGTATG
** * *
10157587 CTTAGACTGGGGTTGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGCTGAGC
10157652 CGGTCGGAGAGGTATAATGCGTAAGCCGGGGATCCGCCCGATCCCCCTCTACGTGCTACCGGTCC
66 CGGTCGGAGAGGTATAATGCGTAAGCCGGGGATCCGCCCGATCCCCCTCTACGTGCTACCGGTCC
10157717 CACTGCCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
131 CACTGCCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * *
10157782 CCCATGAAACAAGCGTGCCGGCACTCAACCGATCGGGGAGGCAGAATGCGCAAGCCTACGATCGA
196 CCCATGAAACAAGCGTGCCGGCACTCAACCGATCGGGGAGGCAGAATGCACAAGCCGACGACCGA
* * * *
10157847 CCCGGTCCCGGTCCCCCCTGCGTGTTGTCGATCCTGCTACCGTAACCTTCAGTTC-GGTCTGAT
261 CCCGGTCCCGGTCCCCCCTGCGTGTTGTCGATCCTGCTACCGCAACCCTC-GATCTGGTCCGAT
* *
10157910 CTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTACTGAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGCTGAGC
10157975 CGGTCGGAGAGGTATAATGCGTAAGCCGGGGATCCGCCCGATCCCCCTCTACGTGCTACCGGTCC
66 CGGTCGGAGAGGTATAATGCGTAAGCCGGGGATCCGCCCGATCCCCCTCTACGTGCTACCGGTCC
10158040 CACTGCCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
131 CACTGCCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* *
10158105 CCCATGAAACGAGCGTGCCGGCACTCAACCGGTCGGGGAGGCAGAATGCACAAGCCGACGACCGA
196 CCCATGAAACAAGCGTGCCGGCACTCAACCGATCGGGGAGGCAGAATGCACAAGCCGACGACCGA
*
10158170 CCCGGTCCCGGTCCCTCCTGCGTGTTGTCGATCCTGCTACCGCAACCCTCGATCTGGTCCGAT
261 CCCGGTCCCGGTCCCCCCTGCGTGTTGTCGATCCTGCTACCGCAACCCTCGATCTGGTCCGAT
* * * * * * *
10158233 CTTAAACTGGGAATGAACTTCGTACGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAGT
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGCTGAGC
** * * * * * ** *
10158298 CGACCGGAGAGGCATAATGTGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCAGTCC
66 CGGTCGGAGAGGTATAATGCGTAAGCCGGGGATCCGCCCGATCCCCCTCTACGTGCTACCGGTCC
** * * *
10158363 TGCTGCCACAACCCTCGGTAC-GGCTGGGGCTTCGACATGGAATGAACTCCCTATGCCTAAGCCA
131 CACTGCCACAACCCTCAGT-CTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * * * * *
10158427 ACCTACGAAACAGGCGTG-CGAGCGCTTAGCCGACCGGAGAGGTAGAATGCGCAAGCC-A--A-G
195 ACCCATGAAACAAGCGTGCCG-GCACTCAACCGATCGGGGAGGCAGAATGCACAAGCCGACGACC
* * * * ** **
10158487 GA-TCGG-CCCGATCCCCCCATGCGTGCTGTCGATCCTACTGTCGCAACCCTCGATCCAGTCCGA
259 GACCCGGTCCCGGTCCCCCC-TGCGTGTTGTCGATCCTGCTACCGCAACCCTCGATCTGGTCCGA
10158550 T
323 T
* * * *
10158551 CTTACACTGGAAATAAACTCCGTATGC
1 CTTAGACTGGGAATGAACTTCGTATGC
10158578 TTAGACATGG
Statistics
Matches: 597, Mismatches: 67, Indels: 13
0.88 0.10 0.02
Matches are distributed among these distances:
317 10 0.02
318 64 0.11
319 2 0.00
320 1 0.00
322 6 0.01
323 513 0.86
324 1 0.00
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (323 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGCTGAGC
CGGTCGGAGAGGTATAATGCGTAAGCCGGGGATCCGCCCGATCCCCCTCTACGTGCTACCGGTCC
CACTGCCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
CCCATGAAACAAGCGTGCCGGCACTCAACCGATCGGGGAGGCAGAATGCACAAGCCGACGACCGA
CCCGGTCCCGGTCCCCCCTGCGTGTTGTCGATCCTGCTACCGCAACCCTCGATCTGGTCCGAT
Found at i:10158580 original size:26 final size:26
Alignment explanation
Indices: 10158551--10158603 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10158541 CCAGTCCGAT
10158551 CTTACAC-TGGAAATAAACTCCGTATG
1 CTTACACATGG-AATAAACTCCGTATG
* *
10158577 CTTAGACATGGAATGAACTCCGTATG
1 CTTACACATGGAATAAACTCCGTATG
10158603 C
1 C
10158604 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTACACATGGAATAAACTCCGTATG
Found at i:10159079 original size:26 final size:26
Alignment explanation
Indices: 10159050--10159102 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10159040 CCGATTCGAT
10159050 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
10159076 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
10159102 C
1 C
10159103 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:10160182 original size:26 final size:26
Alignment explanation
Indices: 10160141--10160193 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10160131 CCGGTTCGAT
*
10160141 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
10160167 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
10160193 C
1 C
10160194 CTAATCAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:10160328 original size:184 final size:184
Alignment explanation
Indices: 10160138--10160597 Score: 464
Period size: 184 Copynumber: 2.4 Consensus size: 184
10160128 AGTCCGGTTC
** * * *
10160138 GATCTTAGACTAGGAATGAAC-TCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA-TCA
1 GATCTTAGACTAGGAATGAACTTC-GTATGCTTAGACAAGGAATAAACTCCGTATGCCTAAGCCA
* * * * *
10160201 ACCCATGAAACTAGCGTACGGGCACTC-GGTCGGTCGGAGAGGCAAAATGCGC-AAGCTGGGGAT
65 ACCCACGAAACAAGCGTACGGGCACTCAGCT-AGTCGGAGAGGCAAAATGCACAAAG--GGGGAT
* *
10160264 CGGCCCGATCCCACCCTACATGCTGCCGATCCTGCTACCGCAAGCCTCGATCCGATCT
127 CGACCCGATCCCACCCTACATGCTACCGATCCTGCTACCGCAAGCCTCGATCCGATCT
* *
10160322 GATCTTAGACTGGGAATTAACTTCGTATGCTTAGACAAGGAATAAACTCCGTATGCCTAAGCCAA
1 GATCTTAGACTAGGAATGAACTTCGTATGCTTAGACAAGGAATAAACTCCGTATGCCTAAGCCAA
* * *
10160387 CCCACGAAACAAGCGTACGGGCGCTCAGCTAGTCGGAGAGGTAGAATGCACAAAGGGGGATCGAC
66 CCCACGAAACAAGCGTACGGGCACTCAGCTAGTCGGAGAGGCAAAATGCACAAAGGGGGATCGAC
* * * * * *
10160452 CCGATCCCCCCCTGCGTGCTACCGATCCTGCTACTGGTCTTACTGCTGTAA-CACTCGGTTCGGT
131 CCGATCCCACCCTACATGCTACCGATCCTGCTA-----C---C-GC---AAGC-CTCGATCCGAT
10160516 CT
183 CT
* * * * *
10160518 GATCTTAGACTGGGAATGAAC-CCGTATGCTTAGACATGGAATGAACTCCGTGTGCCTAAGCCAA
1 GATCTTAGACTAGGAATGAACTTCGTATGCTTAGACAAGGAATAAACTCCGTATGCCTAAGCCAA
*
10160582 CCTACGAAACAAGCGT
66 CCCACGAAACAAGCGT
10160598 GCAGGTGCTC
Statistics
Matches: 230, Mismatches: 29, Indels: 23
0.82 0.10 0.08
Matches are distributed among these distances:
184 89 0.39
185 45 0.20
186 5 0.02
189 1 0.00
192 1 0.00
193 2 0.01
195 55 0.24
196 32 0.14
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.21
Consensus pattern (184 bp):
GATCTTAGACTAGGAATGAACTTCGTATGCTTAGACAAGGAATAAACTCCGTATGCCTAAGCCAA
CCCACGAAACAAGCGTACGGGCACTCAGCTAGTCGGAGAGGCAAAATGCACAAAGGGGGATCGAC
CCGATCCCACCCTACATGCTACCGATCCTGCTACCGCAAGCCTCGATCCGATCT
Found at i:10160363 original size:26 final size:26
Alignment explanation
Indices: 10160325--10160377 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10160315 CCGATCTGAT
** * *
10160325 CTTAGACTGGGAATTAACTTCGTATG
1 CTTAGACAAGGAATAAACTCCGTATG
10160351 CTTAGACAAGGAATAAACTCCGTATG
1 CTTAGACAAGGAATAAACTCCGTATG
10160377 C
1 C
10160378 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACAAGGAATAAACTCCGTATG
Found at i:10161050 original size:26 final size:26
Alignment explanation
Indices: 10161021--10161073 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10161011 CCGATCTGAT
*
10161021 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
10161047 CTTAGACATGGAATGAATTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
10161073 C
1 C
10161074 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:10161315 original size:159 final size:157
Alignment explanation
Indices: 10161047--10161548 Score: 419
Period size: 159 Copynumber: 3.2 Consensus size: 157
10161037 ACTCCGTATG
* * * * *
10161047 CTTAGACATGGAATGAATTCCATATGCCTAAGCCAACCCAAGAAATGAGCGTCTGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCTTC-GGGAGCTCAGC
* ** * * * * * *
10161112 CGACCGGAGAGTAAGAATGCGCTAGCCAAGGA-CTGGCCCAATCCCCCCCTGCATGCTGTCGATC
65 CGGCCGGAGAGGCATAATGCGCAAGCCAGGGATC-GGACCGATCCCCCCCTGCGTGCTGTCGATC
* * *
10161176 CTGTTGTCGCAACCCTCGGTCTGATCTGAT
129 CTGTTGCCACAACCCTCGGTCCG-TCTGAT
* * * *
10161206 CTTAGAC-TGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATTCAGGAGCTGAG
1 CTTAGACATG-GAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGC-TTCGGGAGCTCAG
* * * * *
10161270 CCGGCTGGAGAGGCATAATGCGCAAGCCAGGGATCGGTCCGATCCCCCTCTGCGTCCTGTCGGTC
64 CCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCGGACCGATCCCCCCCTGCGTGCTGTCGATC
*** * * **
10161335 CTGCCACCATAACCCTCGGTCCGGCTGGGG
129 CTGTTGCCACAACCCTCGGTCCGTCT-GAT
* * * *
10161365 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG-AACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGC-TTCGGGAGCTCAGC
* * * * ** *
10161429 TGGCCGGAGAGGC-TGAATGCACAAGCCGGGGATC-GACTTGAT-CCCCCCTGCGTGCTACCGAA
65 CGGCCGGAGAGGCAT-AATGCGCAAGCCAGGGATCGGAC-CGATCCCCCCCTGCGTGCTGTCGAT
*
10161491 CCT-TCTGCCACAACCCTCGGTTCGGT-TCGAT
128 CCTGT-TGCCACAACCCTCGG-TCCGTCT-GAT
10161522 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCATATGC
10161549 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 62, Indels: 22
0.76 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 58 0.21
158 54 0.20
159 153 0.56
160 5 0.02
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCTTCGGGAGCTCAGCC
GGCCGGAGAGGCATAATGCGCAAGCCAGGGATCGGACCGATCCCCCCCTGCGTGCTGTCGATCCT
GTTGCCACAACCCTCGGTCCGTCTGAT
Found at i:10161548 original size:157 final size:159
Alignment explanation
Indices: 10161185--10161548 Score: 362
Period size: 157 Copynumber: 2.3 Consensus size: 159
10161175 CCTGTTGTCG
* * * *
10161185 CAACCCTCGG-TCTGATCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGA
1 CAACCCTCGGTTCGGATC-GATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGA
* * * * *
10161249 AACGAGCATTCAGGAGCTGAGCCGGCTGGAGAGGCATAATGCGCAAGCCAGGGATCGGTCCGATC
65 AACGAGCATGCAGGAGCTCAGCCGGCCGGAGAGGCATAATGCACAAGCCAGGGATCGCTCCGATC
** **
10161314 CCCCTCTGCGTCCTGTCGGTCCTGCCACCA
130 CCCCTCTGCGTCCTACCGAACCTGCCACCA
* * * * ** *
10161344 TAACCCTCGGTCCGGCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACG-
1 CAACCCTCGGTTCGGATCGATCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGA
* * * * * * *
10161407 AACGGGCGTGCGGGCGCTCAGCTGGCCGGAGAGGC-TGAATGCACAAGCCGGGGATCGACT-TGA
65 AACGAGCATGCAGGAGCTCAGCCGGCCGGAGAGGCAT-AATGCACAAGCCAGGGATCG-CTCCGA
* * **
10161470 TCCCCC-CTGCGTGCTACCGAACCTTCTGCCA
128 TCCCCCTCTGCGTCCTACCGAACCTGCCACCA
*
10161501 CAACCCTCGGTTCGGTTCGATCTTAGACTGGGAATGAACTCCATATGC
1 CAACCCTCGGTTCGGATCGATCTTAGACTGGGAATGAACTCCATATGC
10161549 TTAGACTGGG
Statistics
Matches: 163, Mismatches: 37, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
156 1 0.01
157 57 0.35
158 53 0.33
159 48 0.29
160 4 0.02
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.20
Consensus pattern (159 bp):
CAACCCTCGGTTCGGATCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAA
ACGAGCATGCAGGAGCTCAGCCGGCCGGAGAGGCATAATGCACAAGCCAGGGATCGCTCCGATCC
CCCTCTGCGTCCTACCGAACCTGCCACCA
Found at i:10161558 original size:26 final size:26
Alignment explanation
Indices: 10161522--10161574 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10161512 TCGGTTCGAT
10161522 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
10161548 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10161574 C
1 C
10161575 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10161873 original size:159 final size:158
Alignment explanation
Indices: 10161663--10162098 Score: 455
Period size: 159 Copynumber: 2.8 Consensus size: 158
10161653 GGGGATCAGC
** * *
10161663 CCGATCCTGCTGCCACAACGCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCT
1 CCGATCCCACTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCT
* * *
10161728 AAGTCAACCCACGAAATGAGCTTTCGGGTGCTGAGCCGACCAGAGAGGCATAATGCATAAGCCGG
66 AAGTCAACCCACGAAATGAGCTTGCGGGTGCTGAGCCGACCAGAGAGGCATAATGCATAACCCGA
* ** * * *
10161793 GGATGGACCCAATCCCCCTTTGTGTGCTG
131 AGACCGACCCAATCCCCC-CTGCGTGCTA
* * *
10161822 CC-AGTCCCACTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACACCCTATGCC
1 CCGA-TCCCACTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCC
* * * ** * * * *
10161886 TAAGCCAACCCACGAAACGGGCTTGCAAGTGCTCAGCTGACCAGAGAGGCAGAATGCGTAACCCG
65 TAAGTCAACCCACGAAATGAGCTTGCGGGTGCTGAGCCGACCAGAGAGGCATAATGCATAACCCG
10161951 AAGACCGACCCAATCCCCCCTGCGTGCTA
130 AAGACCGACCCAATCCCCCCTGCGTGCTA
* ** * * * ** **
10161980 TCGATCCTGCTACCACAACCCTCAGTCTGG-TCCGATCTTAGAC-TGGGAATGAACTATGTATGC
1 CCGATCCCACTGCCACAACCCTCAGTCCGGCT-AGGGCTTAGACAT-GGAATGAACTCCGTATGC
* * ** *
10162043 CTAAGTTAACCCACGAAATGAGCGTGCGGGCACTGAGCCGACCGGAGAGGCATAAT
64 CTAAGTCAACCCACGAAATGAGCTTGCGGGTGCTGAGCCGACCAGAGAGGCATAAT
10162099 ACGCAAGCCA
Statistics
Matches: 223, Mismatches: 50, Indels: 9
0.79 0.18 0.03
Matches are distributed among these distances:
157 2 0.01
158 96 0.43
159 125 0.56
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.18
Consensus pattern (158 bp):
CCGATCCCACTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCT
AAGTCAACCCACGAAATGAGCTTGCGGGTGCTGAGCCGACCAGAGAGGCATAATGCATAACCCGA
AGACCGACCCAATCCCCCCTGCGTGCTA
Found at i:10162332 original size:12 final size:12
Alignment explanation
Indices: 10162312--10162344 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
10162302 ATGTTGTCGA
10162312 TCCTGCTGTTGG
1 TCCTGCTGTTGG
*
10162324 TCCTACTGTTGG
1 TCCTGCTGTTGG
10162336 TCCTGCTGT
1 TCCTGCTGT
10162345 CGCAACCCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.03, C:0.27, G:0.27, T:0.42
Consensus pattern (12 bp):
TCCTGCTGTTGG
Found at i:10162399 original size:26 final size:25
Alignment explanation
Indices: 10162369--10162418 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
10162359 TGGTATGATT
*
10162369 TTAGACCGGGAATGAACTCCGTATGG
1 TTAGACAGGGAATGAACT-CGTATGG
*
10162395 TTAGACATGGAATGAACTCGTATG
1 TTAGACAGGGAATGAACTCGTATG
10162419 CCTAAGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (25 bp):
TTAGACAGGGAATGAACTCGTATGG
Found at i:10162879 original size:156 final size:158
Alignment explanation
Indices: 10162395--10163207 Score: 591
Period size: 158 Copynumber: 5.2 Consensus size: 158
10162385 CTCCGTATGG
* * *
10162395 TTAGACAT-GGAATGAACT-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCCGCTCAGT
1 TTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGT
* * * * * * *
10162458 CGGTCTGAGAAGCAGAATACATAAG-TCGGGGATCGACCTAGTCCCCC-CTGCGTGCTGTCAATC
65 CGATCAGAGAGGCAGAATGCACAAGCT-GGGGATCGACC-AGGCCCCCTCTGCGTGCTGTCGATC
*
10162521 CTGCTACCGCAACCCTCGGTCCGGTCCGATC
128 CTGCTACCGCAACCCTCGGTCCGGTCTGATC
* * * * *
10162552 TTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATTCGAGCGCTGAGCC
1 TTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGTC
* * * * * * * * * *
10162617 GATCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCTGGTCCCCTTCTGGGTGCTGTCGGTCCC
66 GATCAGAGAGGCAGAATGCACAAGCTGGGGATCGACCAGG-CCCCCTCTGCGTGCTGTCGATCCT
* * **
10162682 GCTACCACAACCCTCGGTCCAG-CTGGGGC
130 GCTACCGCAACCCTCGGTCCGGTCT-GATC
** * * *
10162711 TTAGACAAGGAATAAACTCCCTATGCCTAAGCCAA-CCACGAAACGGGCATGCGGGCGCTCAGTC
1 TTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGTC
* * * * * * * *
10162775 GACCAGAG-GGCAGAATGCACAAGCTGGGGATCGGCCCGGCCCCCTCCGCGTACTATTGATCCTA
66 GATCAGAGAGGCAGAATGCACAAGCTGGGGATCGACCAGGCCCCCTCTGCGTGCTGTCGATCCTG
* *
10162839 CTACCGTAACCCTCGATCCGGTCTGATC
131 CTACCGCAACCCTCGGTCCGGTCTGATC
* * * * **
10162867 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACG-AACGAGCGTACGGGTGCTCAACC
1 TTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGTC
* ** ** * * * *
10162931 GATC-GAAAAGGCAGAATGCGTAAGCCAGGGATCAACTC-GATCCCTCTCTACGTGCTGTC-AGT
66 GATCAG-AGAGGCAGAATGCACAAGCTGGGGATCGAC-CAG-GCCCCCTCTGCGTGCTGTCGA-T
* * * * **
10162993 -CTCGCTGCCACAACCCTCAGTCTGG-CTAGGGC
127 CCT-GCTACCGCAACCCTCGGTCCGGTCT-GATC
* * * * *
10163025 TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTCAG-
1 TTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGT
* * * * * * * *
10163088 CTGACCGGAAAGGCAGAATGCGCAAGCTAGGGATCGGCCCGGTCCCCC-CTGCGTGTTGTCGATC
65 C-GATCAGAGAGGCAGAATGCACAAGCTGGGGATCGACCAGG-CCCCCTCTGCGTGCTGTCGATC
* ** * *
10163152 CTACTGTCAC-ACCCTCGGTTCAGG-CTGATC
128 CTGCTACCGCAACCCTCGG-TCCGGTCTGATC
* *
10163182 CTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
10163208 TTAGACTGGG
Statistics
Matches: 511, Mismatches: 120, Indels: 50
0.75 0.18 0.07
Matches are distributed among these distances:
155 1 0.00
156 89 0.17
157 107 0.21
158 193 0.38
159 120 0.23
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
TTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGTC
GATCAGAGAGGCAGAATGCACAAGCTGGGGATCGACCAGGCCCCCTCTGCGTGCTGTCGATCCTG
CTACCGCAACCCTCGGTCCGGTCTGATC
Found at i:10163072 original size:315 final size:315
Alignment explanation
Indices: 10162395--10163207 Score: 912
Period size: 315 Copynumber: 2.6 Consensus size: 315
10162385 CTCCGTATGG
* * *
10162395 TTAGACATGGAATGAACT-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCCGCTCAGTC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTC
** * * * * * * * *
10162459 GGTCTGAGAAGCAGAATACATAAG-TCGGGGATCGACCTAGTCCCCCCTGCGTGCTGTCAATCCT
66 GACCAGAG-GGCAGAATGCACAAGCT-GGGGATCGGCC-CGGCCCCCCTGCGTGCTGTCGATCCT
* * * * * *
10162523 GCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAC
128 ACTACCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * *
10162588 CCACGAAACGAGCATTCGAGCGCTGAGCCGATCGGAGAGGCATAATGCGCAAGCCGAGGATCGAC
193 CCACGAAACGAGCATACGAGCGCTCAACCGATCGAAAAGGCAGAATGCGCAAGCCGAGGATCAAC
* ** * * *
10162653 CTGGTCCCCTTCTGGGTGCTGTCGGTCCCGCTACCACAACCCTCGGTCCAGCTGGGGC
258 CTGATCCCCTTCTACGTGCTGTCAGTCCCGCTACCACAACCCTCAGTCCAGCTAGGGC
* * *
10162711 TTAGACAAGGAATAAACTCCCTATGCCTAAGCCAA-CCACGAAACGGGCATGCGGGCGCTCAGTC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTC
* * * *
10162775 GACCAGAGGGCAGAATGCACAAGCTGGGGATCGGCCCGGCCCCCTCCGCGTACTATTGATCCTAC
66 GACCAGAGGGCAGAATGCACAAGCTGGGGATCGGCCCGGCCCCC-CTGCGTGCTGTCGATCCTAC
10162840 TACCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCC
130 TACCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * *
10162905 ACG-AACGAGCGTACGGGTGCTCAACCGATCGAAAAGGCAGAATGCGTAAGCC-AGGGATCAA-C
195 ACGAAACGAGCATACGAGCGCTCAACCGATCGAAAAGGCAGAATGCGCAAGCCGA-GGATCAACC
* * **
10162967 TCGAT-CCCTCTCTACGTGCTGTCAGTCTCGCTGCCACAACCCTCAGTCTGGCTAGGGC
259 T-GATCCCCT-TCTACGTGCTGTCAGTCCCGCTACCACAACCCTCAGTCCAGCTAGGGC
* *
10163025 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTCAG-C
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTC
* * * * *
10163089 TGACCGGAAAGGCAGAATGCGCAAGCTAGGGATCGGCCCGGTCCCCCCTGCGTGTTGTCGATCCT
66 -GACCAG-AGGGCAGAATGCACAAGCTGGGGATCGGCCCGG-CCCCCCTGCGTGCTGTCGATCCT
* * *
10163154 ACT---GTCACACCCTCGGTTCAGG-CTGATCCTAGACTGGGAATGAACTCCGTATGC
128 ACTACCGT-A-ACCCTC-GATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
10163208 TTAGACTGGG
Statistics
Matches: 420, Mismatches: 64, Indels: 27
0.82 0.13 0.05
Matches are distributed among these distances:
313 9 0.02
314 127 0.30
315 165 0.39
316 99 0.24
317 20 0.05
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (315 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTC
GACCAGAGGGCAGAATGCACAAGCTGGGGATCGGCCCGGCCCCCCTGCGTGCTGTCGATCCTACT
ACCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCA
CGAAACGAGCATACGAGCGCTCAACCGATCGAAAAGGCAGAATGCGCAAGCCGAGGATCAACCTG
ATCCCCTTCTACGTGCTGTCAGTCCCGCTACCACAACCCTCAGTCCAGCTAGGGC
Found at i:10163222 original size:26 final size:26
Alignment explanation
Indices: 10163183--10163232 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
10163173 AGGCTGATCC
10163183 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
10163209 TAGACTGGGGATGAACTCCGTATG
1 TAGACTGGGAATGAACTCCGTATG
10163233 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:10163601 original size:26 final size:26
Alignment explanation
Indices: 10163561--10163613 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10163551 CTGGTCCGAT
*
10163561 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
10163587 CTTAGACATGA-AATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
10163613 C
1 C
10163614 CAAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:10164464 original size:860 final size:872
Alignment explanation
Indices: 10162709--10164653 Score: 2119
Period size: 860 Copynumber: 2.2 Consensus size: 872
10162699 TCCAGCTGGG
* * * * * * * * * *
10162709 GCTTAGACAAGGAATAAACTCCCTATGCCTAAGCCAA-CCACGAAACGGGCATGCGGGCGCTCAG
1 GCTTAGACAAGAAATGAACTCCGTATGCCAAAGCCAACCCACAAAACGAGCGTACGGGCGTTCAA
* * * * * * * * * *
10162773 TCGACCAGAG-GGCAGAATGCACAAGCTGGGGATCGGCCC-GGCCCCCTCCGCGTACTATTGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGACCGACCCAGTCCCCC-CTGCGTGCTGTCGATC
* * * * * * * * *
10162836 CTACTACCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTACTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATAAACACCATATGCCTAAGTCA
* ** * * * ** * * * * * *
10162901 ACCCACG-AACGAGCGTACGGGTGCTCAACCGATCGAAAAGGCAGAATGCGTAAGCCAGGGA-TC
195 ACCCACGAAACGAGCGTTCGGGCACTGAGCAGGCCGAAGAGGAATAATGCGCAAGTCAGAGAGT-
** * * * * * * * ** * *
10162964 AACTCGATCCCTCTCTACGTGCTGTCAGTCTCGCTGCCACAACCCTCAGTCTGGCTAGGGCTTAG
259 GGCTCGGTCCCCCTCTGCATGCTGCCGGTCCCGCTATCACCACCCTCAGTCTGACTAGGGCTTAG
* *
10163029 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTCAGCTGACC
324 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGCGGGCACTCAGC--ACA
* * * *
10163094 GGAAAGGCAGAATGCGCAAGCTAGGGATCGGCCCGGTCCCCCCTGCGTGTTGTCGATCCTACTGT
387 GGAAAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCC-ACTG-
* *
10163159 CACACCCTCGGTTCAGGCTGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAA
450 --CACCCTCGGTTC--GCTGATCCTAGACTGGGAATAAACTCCGTATGCTCAGACTGGGGATGAA
* * * *
10163224 CTCCGTATGTCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCAATCGGAGAGGTCAAC
511 CTCCATAAGTCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAGCCAATCGGAGAGGTCAAC
* * * * * * * * * * *
10163289 TGGAAAGGCATGATCCATAAGTCAAGGATCAGCCTGGTCCCCCTCTGCGTTCTGTCGATCCCGCT
576 TGGAAAGGAATAAACCACAAGCCAAGGATCAGCCCGATCCCCCACTACGTGCTGTCGATCCCACT
* *
10163354 GCCGGTCCTGCTGCCACAACCCTCGATCCAGCTGGGGTTTAGACATGGAATGAACTCCGTATGCC
641 GCCGGTCCTGCTACCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCC
* **
10163419 TAAGCCAACCCACGAAACAAGCCTGCGGGTGCTCAGCCAACCAAAGAGGAAGAATGCACAAGCCG
706 TAAGCCAACCCACGAAACAAGCCTACGGGCACTCAGCCAACCAAAGAGGAAGAATGCACAAGCCG
* * *
10163484 TGGATCGGCCCGATCCCTCCTGCGTGCTATCGATCCTATTGCTGGTCCTACTATCGCAACCCTCG
771 GGGATCGACCCGATCCCTCCTGCGTGCTATCGATCCTACTGCTGGTCCTACTATCGCAACCCTCG
10163549 GTCTGGTCCGATCTTAGACTGAGAATGAACTTCGTAT
836 GTCTGGTCCGATCTTAGACTGAGAATGAACTTCGTAT
* * * *
10163586 GCTTAGACATGAAATGAACTCCGTATGCCAAAGCCAACTCACGAAATGAGCGTACGGGCAG-TCA
1 GCTTAGACAAGAAATGAACTCCGTATGCCAAAGCCAACCCACAAAACGAGCGTACGGGC-GTTCA
* * * **
10163650 GCCGACCGGAGAGGTAGAATGCGCAAG-TCGGGGACCGTCCTGGTCCCCCCTGCGTGCTGTCGAT
65 ACCGACCGGAGAGGCAGAATGCGCAAGCT-GGGGACCGACCCAGTCCCCCCTGCGTGCTGTCGAT
** * * * * *
10163714 CCTGTTGCTGTAAGCCTCGGTCTGGTCCGATCTTAGACTGGGAATAAACACCGTTTGCCTAAGTC
129 CCTACTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATAAACACCATATGCCTAAGTC
* *
10163779 AGCCCATGAAACGAGCGTTCGGGCACTGAGCAGGCCGAAGAGGAATAATGCGCAAGTCAGAGAGT
194 AACCCACGAAACGAGCGTTCGGGCACTGAGCAGGCCGAAGAGGAATAATGCGCAAGTCAGAGAGT
* *
10163844 GGCTCGGTCCCCCTCTGCATGCTGCCGGTCCCGCTATCACCACCCTCGGTCTGACTGGGGCTTAG
259 GGCTCGGTCCCCCTCTGCATGCTGCCGGTCCCGCTATCACCACCCTCAGTCTGACTAGGGCTTAG
** * *
10163909 ACATGGAATGAACTCCCTATGCCTAA-CCAACCCATGAAACGGGCATGTGGGCACTCAGC-CAGT
324 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGCGGGCACTCAGCACAGG
* * *
10163972 AGAGGCAGAATG-GACAAGCCGGGGATCAGCTCGGTCCCCCCTGCGTGCTATCGAT-C-C-G-A-
389 AAAGGCAGAATGCG-CAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCCACTGCAC
* * *
10164031 TC-CGG-TC-C-GATCTTAGATTGGGAATAAACTCCGTATGCTCAGACTGGGGATGAACTCCATA
453 CCTCGGTTCGCTGATCCTAGACTGGGAATAAACTCCGTATGCTCAGACTGGGGATGAACTCCATA
* * * *
10164092 AG-CTTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCAGTCGGAGA-GTCGA-TCGGAG
518 AGTC-TAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAGCCAATCGGAGAGGTCAACT-GGAA
* * * *
10164154 AGGAATAAAGCGCAAGCCAGGGATTAGCCCGATCCCCCACTACGTGCTG-CTGATCCCACTGCCG
581 AGGAATAAACCACAAGCCAAGGATCAGCCCGATCCCCCACTACGTGCTGTC-GATCCCACTGCCG
* *
10164218 GTCCTGCTACCACAACCCTCGGTCCTA-CTGGGGCTTAGACATGGAATGAACTCCGTATGCTTAA
645 GTCCTGCTACCACAACCCTCGATCC-AGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
* * * * * * ** *
10164282 GCCAACCCATGAAACGAGCGTACGGGCACTCAGCCGACCGAAGAGGTAGAATGCGTAAGTCGGGG
709 GCCAACCCACGAAACAAGCCTACGGGCACTCAGCCAACCAAAGAGGAAGAATGCACAAGCCGGGG
* * * * * * *
10164347 ATCGACCC-AGTCCCTCCTGTGTGCTGTCGATCCTGCTGGTGGTCCTGCTA-CTGTAACTCTCGG
774 ATCGACCCGA-TCCCTCCTGCGTGCTATCGATCCTACTGCTGGTCCTACTATC-GCAACCCTCGG
* *
10164410 TCTGGTCTGATCTTAGACTGGGAATGAAC-TC-TAT
837 TCTGGTCCGATCTTAGACTGAGAATGAACTTCGTAT
* * * *
10164444 ACGCTTAGACAAGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAACGAGCGTACGGGCGTTC
1 --GCTTAGACAAGAAATGAACTCCGTATGCCAAAGCCAACCCACAAAACGAGCGTACGGGCGTTC
* * *
10164509 AATCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGAT
64 AACCGACCGGAGAGGCAGAATGCGCAAGCTGGGGACCGACCCAGTCCCCCCTGCGTGCTGTCGAT
* *
10164574 CCTACTGCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATAAACTCCATATGCCTAAGTC
129 CCTACTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATAAACACCATATGCCTAAGTC
10164639 AACCCACGAAACGAG
194 AACCCACGAAACGAG
10164654 TGTGCAGGCA
Statistics
Matches: 889, Mismatches: 161, Indels: 53
0.81 0.15 0.05
Matches are distributed among these distances:
858 3 0.00
859 7 0.01
860 419 0.47
861 94 0.11
862 1 0.00
865 2 0.00
866 3 0.00
867 1 0.00
868 1 0.00
872 1 0.00
873 1 0.00
875 2 0.00
876 48 0.05
877 32 0.04
878 29 0.03
879 122 0.14
880 122 0.14
881 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (872 bp):
GCTTAGACAAGAAATGAACTCCGTATGCCAAAGCCAACCCACAAAACGAGCGTACGGGCGTTCAA
CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGACCGACCCAGTCCCCCCTGCGTGCTGTCGATCC
TACTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATAAACACCATATGCCTAAGTCAA
CCCACGAAACGAGCGTTCGGGCACTGAGCAGGCCGAAGAGGAATAATGCGCAAGTCAGAGAGTGG
CTCGGTCCCCCTCTGCATGCTGCCGGTCCCGCTATCACCACCCTCAGTCTGACTAGGGCTTAGAC
ATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGCGGGCACTCAGCACAGGAA
AGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCCACTGCACCCT
CGGTTCGCTGATCCTAGACTGGGAATAAACTCCGTATGCTCAGACTGGGGATGAACTCCATAAGT
CTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAGCCAATCGGAGAGGTCAACTGGAAAGGAA
TAAACCACAAGCCAAGGATCAGCCCGATCCCCCACTACGTGCTGTCGATCCCACTGCCGGTCCTG
CTACCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CACGAAACAAGCCTACGGGCACTCAGCCAACCAAAGAGGAAGAATGCACAAGCCGGGGATCGACC
CGATCCCTCCTGCGTGCTATCGATCCTACTGCTGGTCCTACTATCGCAACCCTCGGTCTGGTCCG
ATCTTAGACTGAGAATGAACTTCGTAT
Found at i:10166778 original size:26 final size:26
Alignment explanation
Indices: 10166742--10166794 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10166732 CCGGTTCGAT
*
10166742 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
10166768 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10166794 C
1 C
10166795 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10168169 original size:159 final size:158
Alignment explanation
Indices: 10167761--10168200 Score: 426
Period size: 159 Copynumber: 2.8 Consensus size: 158
10167751 AACTCCGTAT
* * *
10167761 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
10167826 CCGGCTGGAGAGACAGAATGTGTAAG-CTGAGGATCGGCCCAATCCCCCT-TGCGTGCTGTCAAT
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCT-AGGATCGGCCC-GTACCCCTCTGCGTGCTGCCAAT
*** * * *
10167889 CTTGCTGCCGCAACCCTCGGTCTGGTCCGA
129 CCCACTGCCACAACCCTCAGTCTGGTCAGA
* * * * ** *
10167919 TCTTAGAC-TGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACAAGCGTGCGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * ** **
10167983 GTCGACCGAAGAGGCCTAATGCGCAAGCCTAGGATCGGCCCGGTACCCCTCTGCGTGCTGCCGGT
65 GCCGGCCGAAGAGGCAGAATGCGCAAGCCTAGGATCGGCCC-GTACCCCTCTGCGTGCTGCCAAT
*
10168048 CCCACTGCCACAACCCTCAGT-TAGG-CTAGG
129 CCCACTGCCACAACCCTCAGTCT-GGTC-AGA
* *
10168078 GCTTAGACATGGAATGAACTTCC-TATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* ** *
10168142 GCCGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCG-ATCCCTCTTGCGTGCTG
65 GCCGGCCGAAGAGGCAGAATGCGCAAGCCTAGGATCGGCCCGTACCCCTC-TGCGTGCTG
10168201 TCGATCCTGC
Statistics
Matches: 225, Mismatches: 49, Indels: 16
0.78 0.17 0.06
Matches are distributed among these distances:
157 7 0.03
158 99 0.44
159 115 0.51
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGAAGAGGCAGAATGCGCAAGCCTAGGATCGGCCCGTACCCCTCTGCGTGCTGCCAATCC
CACTGCCACAACCCTCAGTCTGGTCAGA
Found at i:10168273 original size:26 final size:26
Alignment explanation
Indices: 10168237--10168289 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10168227 CCGGTTCGAT
10168237 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
10168263 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
10168289 C
1 C
10168290 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:10174828 original size:26 final size:26
Alignment explanation
Indices: 10174799--10174851 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10174789 CCAGTTCGAT
*
10174799 CTTAGACTGGGAATGATCTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
10174825 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10174851 C
1 C
10174852 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10175816 original size:159 final size:159
Alignment explanation
Indices: 10175520--10175816 Score: 330
Period size: 159 Copynumber: 1.9 Consensus size: 159
10175510 GTGGCTCAAA
* * * * * *
10175520 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCTAACCGACGAAATGAGCGTGCGGGCCCTCA
1 ATCTTAGACTAGGAATGAACTCCGTATGCATAAGCTAACCAACGAAACGAGCATACGAGCCCTCA
* * * ** ** *
10175585 ACCGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCAGTCCCCCCCAGTGTGTTGTCGAT
66 ACCGGTCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCCAGCATACTGCCGAT
*
10175650 CCTGCTACTGCAACCTTTGATCCGATCTG
131 CCCGCTACTGCAACCTTTGATCCGATCTG
* * *
10175679 ATCTTAGACTGGGAATGAACTCCGTATGCATAAG-TCAACCAACGAAACGAGCATACGAGCGCTG
1 ATCTTAGACTAGGAATGAACTCCGTATGCATAAGCT-AACCAACGAAACGAGCATACGAGCCCTC
* * * * * *
10175743 AGCCGGTCGAAGAGGCATAATGCGCAAGTCAGGGATTGACCC-GATCCCCCTCTGCATACTGCCC
65 AACCGGTCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAG-TCCCCCCCAGCATACTG-CC
10175807 G-TCCCGCTAC
128 GATCCCGCTAC
10175817 CACAACCCCC
Statistics
Matches: 111, Mismatches: 24, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
158 2 0.02
159 107 0.96
160 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
ATCTTAGACTAGGAATGAACTCCGTATGCATAAGCTAACCAACGAAACGAGCATACGAGCCCTCA
ACCGGTCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCCAGCATACTGCCGAT
CCCGCTACTGCAACCTTTGATCCGATCTG
Found at i:10176416 original size:26 final size:26
Alignment explanation
Indices: 10176378--10176430 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10176368 CTGGTCCGAT
*
10176378 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
*
10176404 CTTAGAC-GTGGAATAAACTCCGTATG
1 CTTAGACTG-GGAATAAACTCCATATG
10176430 C
1 C
10176431 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:10176508 original size:380 final size:378
Alignment explanation
Indices: 10175977--10176848 Score: 958
Period size: 380 Copynumber: 2.3 Consensus size: 378
10175967 CCTGCTGCCC
* * *
10175977 CAACCCTCGATCCGGTCTGATCTTATACTGGGAATGAACTCCGTATGCTTGGACTGGGGATGAAC
1 CAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAAC
* * * * * ** * * *
10176042 TCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGTGCACTCAACCAGTCGGAGAGGTCGGTT
65 TCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCAACCGGAGAGGCCGATC
* ** * *
10176107 GGAAAGGCATAATGTGCAAGCCGGGGATCAGCCTGGTCCCCCTCTGCAT-GCTATCGATCCCGCT
130 AGAAAGGCATAATACGCAAGCCGGGGATCAGCCTGCTCCCCCTCT--ATCGCTACCGATCCCGCT
* * * ** * * * *
10176171 GTCGGTCCTGCTGCCACAACGCTTGGTTCGGCTGGGGCTTAGACATGGAACGAACTCCATATGCC
193 GCCGATCCTGCTGCCACAACCCCCGATCCGGCTGGCGCTTAGACATGGAACAAACTCCATATGCC
* * * * *
10176236 TAAGCCAACCCACGAAATGAGCGTAC-GGGTGCTCAGTCGGCCAGAGAGGCAGAATGCACAAGCC
258 TAAGCCAACCCACAAAACGAGCGTACAAGCT-CTCAGCCGGCCAGAGAGGCAGAATGCACAAGCC
* *
10176300 AAGGATCGGA-TCGATCCCCCCTGCGTGCTGCCGATCCTGCTACTGCTCCTACTACCG
322 AAGGAT-GGACCCGATCCCCCCTGCGTGCTACCGATCCTGCTACTGCTCCTACTACCG
* * * * * * *
10176357 TAAGCTTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACGTGGAATAAAC
1 CAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGAATGAAC
** *
10176422 TCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCATTCAGCCAACCGGAGAGGCCGATC
65 TCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCAACCGGAGAGGCCGATC
* ** * *
10176487 AGAAAGGCATAATACGCAAGCCGGGGATCAGTCTGCTCTGCCTCTATGCGCTGCCGATCCCGTTG
130 AGAAAGGCATAATACGCAAGCCGGGGATCAGCCTGCTCCCCCTCTAT-CGCTACCGATCCCGCTG
* * * * *
10176552 CCGATCCTGCTGCCATAACCCCCGATCCGGCTTGCGTTTAGACTTGGAATAAACTCCATATGCCT
194 CCGATCCTGCTGCCACAACCCCCGATCCGGCTGGCGCTTAGACATGGAACAAACTCCATATGCCT
* *** * * *
10176617 AAGCCAACCCACAAAACGAGCGTCCAAGCTCTCAGCCGGTTGGAGAGGCAGAATGCGCATGCCAG
259 AAGCCAACCCACAAAACGAGCGTACAAGCTCTCAGCCGGCCAGAGAGGCAGAATGCACAAGCCAA
* * ** * * * * * * * *
10176682 GGATTGACCCGATCCTCTTTGTGTGCTATCGCTCCTGTTGCTGGTCTTGCTACCG
324 GGATGGACCCGATCCCCCCTGCGTGCTACCGATCCTGCTACTGCTCCTACTACCG
* * *
10176737 CAACCCTCAATCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATTGAATGAAC
1 CAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGAATGAAC
*
10176802 TCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAGC
65 TCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
10176849 TGATCGGAGA
Statistics
Matches: 399, Mismatches: 88, Indels: 10
0.80 0.18 0.02
Matches are distributed among these distances:
378 2 0.01
379 2 0.01
380 392 0.98
381 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (378 bp):
CAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAATGAACT
CCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCAACCGGAGAGGCCGATCA
GAAAGGCATAATACGCAAGCCGGGGATCAGCCTGCTCCCCCTCTATCGCTACCGATCCCGCTGCC
GATCCTGCTGCCACAACCCCCGATCCGGCTGGCGCTTAGACATGGAACAAACTCCATATGCCTAA
GCCAACCCACAAAACGAGCGTACAAGCTCTCAGCCGGCCAGAGAGGCAGAATGCACAAGCCAAGG
ATGGACCCGATCCCCCCTGCGTGCTACCGATCCTGCTACTGCTCCTACTACCG
Found at i:10177295 original size:26 final size:26
Alignment explanation
Indices: 10177259--10177311 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10177249 CCGATCTGAT
*
10177259 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACATCGTATG
*
10177285 CTTAGACTGGGGATGAACATCGTATG
1 CTTAGACTGGGAATGAACATCGTATG
10177311 C
1 C
10177312 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACATCGTATG
Found at i:10178020 original size:26 final size:26
Alignment explanation
Indices: 10177981--10178033 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10177971 GGCTCAAACT
10177981 CTTAGACTGCGAATGAACTCTGTATG
1 CTTAGACTGCGAATGAACTCTGTATG
10178007 CTTAGACATG-GAATGAACTCTGTATG
1 CTTAGAC-TGCGAATGAACTCTGTATG
10178033 C
1 C
10178034 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCTGTATG
Found at i:10178350 original size:158 final size:159
Alignment explanation
Indices: 10178006--10178350 Score: 362
Period size: 158 Copynumber: 2.2 Consensus size: 159
10177996 AACTCTGTAT
* * * *
10178006 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCACCAAAATGAGTGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACCAAAACGAGCGTGCGGGCGCTCA
* *
10178071 GCAGGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTCTACATGCTTCAGTC
66 GCAGGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGATCCACCTCTACATGCTTCAGTC
* * * *
10178136 CCGCTGCCACAACCCTCAGTCTGACTAGG
131 CCACTACCACAACCCTCAGTCAGACTAGA
* ** * *
10178165 GCTAAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA-CGAAACGGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACCAAAACGAGCGTGCGGGCGCTCA
* ** *
10178229 GTC-GGCCGGAGAGGTAGAATGCTCAAGCTGGGGATCGACCCGATCCACC-CTGCATGCTGTC-G
66 G-CAGGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGATCCACCTCTACATGCT-TCAG
* * ** *
10178291 ATCCTACTATCGTAACCCTC-GATCCAGTCT-GA
129 -TCCCACTACCACAACCCTCAG-T-CAGACTAGA
*
10178323 TCTTAGAC-TAGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCTGTATGC
10178351 TTAGACTGGG
Statistics
Matches: 152, Mismatches: 28, Indels: 13
0.79 0.15 0.07
Matches are distributed among these distances:
157 11 0.07
158 99 0.65
159 42 0.28
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACCAAAACGAGCGTGCGGGCGCTCA
GCAGGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGATCCACCTCTACATGCTTCAGTC
CCACTACCACAACCCTCAGTCAGACTAGA
Found at i:10178353 original size:26 final size:26
Alignment explanation
Indices: 10178324--10178376 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10178314 CCAGTCTGAT
*
10178324 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTATATG
* *
10178350 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCTATATG
10178376 C
1 C
10178377 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTATATG
Found at i:10178905 original size:26 final size:26
Alignment explanation
Indices: 10178876--10178928 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10178866 CTGGTCCGAT
* *
10178876 CTTAGATTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
10178902 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
10178928 C
1 C
10178929 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:10179011 original size:184 final size:185
Alignment explanation
Indices: 10178689--10179046 Score: 450
Period size: 184 Copynumber: 1.9 Consensus size: 185
10178679 GGTCTAATCT
*
10178689 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATAAACTCCATATGCCTAAGCCAA
1 GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGAAATAAACTCCATATGCCTAAGCCAA
* *
10178754 CCCACGAAACGAGCGTACGGGCGCTCTACCGACCAGAGAGGCAGAATGCGTAAGCCGGGGACCAA
66 CCCACAAAACGAGCGTACGGGCGCTCAACCGACCAGAGAGGCAGAATGCGTAAGCCGGGGACCAA
* * * * *
10178819 TTCGATCCCCC-CTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCTGGTCC
131 TCCGATCCCCCTCTACGTGCTATCGATCCCGCTACCACAACCCTCGATCTGGTCC
* * ** * * *
10178873 GATCTTAGATTAGGAATGAACTCTGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCA
1 GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACAT-GAAATAAACTCCATATGCCTAAGCCA
* * * * * * * * *
10178937 ACCCACAAAATGAGTGTTCGGGTGCTCAACCGATCGGAGAGGCAGAATGCGTAAGCTGGGGATCG
65 ACCCACAAAACGAGCGTACGGGCGCTCAACCGACCAGAGAGGCAGAATGCGTAAGCCGGGGACCA
* * *
10179002 GTCCGATCCCCCTTTACGTGCTATCGATCCCGCTGCCACAACCCT
130 ATCCGATCCCCCTCTACGTGCTATCGATCCCGCTACCACAACCCT
10179047 TGGTCCGACT
Statistics
Matches: 145, Mismatches: 27, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
183 1 0.01
184 118 0.81
185 26 0.18
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.21
Consensus pattern (185 bp):
GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGAAATAAACTCCATATGCCTAAGCCAA
CCCACAAAACGAGCGTACGGGCGCTCAACCGACCAGAGAGGCAGAATGCGTAAGCCGGGGACCAA
TCCGATCCCCCTCTACGTGCTATCGATCCCGCTACCACAACCCTCGATCTGGTCC
Found at i:10179317 original size:158 final size:157
Alignment explanation
Indices: 10178901--10179319 Score: 450
Period size: 158 Copynumber: 2.6 Consensus size: 157
10178891 AACTCTGTAT
* * * * * * *
10178901 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGTGTTCGGGTGCTCAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * *
10178966 CCGATCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGTCCGATCCCCCTTTACGTGCTATCGATC
66 CCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATC-GACCGATCCCCCTGTA-GTGCTATCGATC
* * *
10179031 CCGCTGCCACAACCCTTGGTCCGACTAGG
129 CCACTGCCACAACCCTCGGTCCGACTAGA
* * * *
10179060 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * *
10179124 GCCGACTGGAGAGGTAGAATGCGTAAGTCGAGGATCGACCTGATCCCCCCTGT-GTGCTGTCGAT
65 GCCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACC-GAT-CCCCCTGTAGTGCTATCGAT
* * *
10179188 CCTACTGCCATAACCCTCGGTCCAGTCT-GA
128 CCCACTGCCACAACCCTCGGTCC-GACTAGA
* * *
10179218 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
* ***
10179283 CCGACCAGAGAGGCA-AGATGTACAAGCCGGGGATCGA
66 CCGACCGGAGAGGCAGA-ATGCGTAAGCCGGGGATCGA
10179320 ATGGGTGGTA
Statistics
Matches: 213, Mismatches: 41, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
157 2 0.01
158 116 0.54
159 87 0.41
160 8 0.04
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCGATCCCCCTGTAGTGCTATCGATCCC
ACTGCCACAACCCTCGGTCCGACTAGA
Found at i:10179961 original size:26 final size:27
Alignment explanation
Indices: 10179932--10179989 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
10179922 CCAATCTGAT
*
10179932 CTTAGAC-TGGGAATGAACTCTGTATG-
1 CTTAGACTTGGG-ATGAACTCTGCATGC
10179958 CTTAGACTTGGGATGAACTCTGCATGC
1 CTTAGACTTGGGATGAACTCTGCATGC
10179985 CTTAG
1 CTTAG
10179990 TCAACCCATG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 20 0.69
27 9 0.31
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (27 bp):
CTTAGACTTGGGATGAACTCTGCATGC
Found at i:10180058 original size:13 final size:13
Alignment explanation
Indices: 10180022--10180061 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
10180012 GGATGCTCAA
10180022 CCGACCGGAGAGG
1 CCGACCGGAGAGG
**
10180035 CCGACTAGAGAGG
1 CCGACCGGAGAGG
10180048 CCGACCGGAGAGG
1 CCGACCGGAGAGG
10180061 C
1 C
10180062 ATAATGCGCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.25, C:0.30, G:0.42, T:0.03
Consensus pattern (13 bp):
CCGACCGGAGAGG
Found at i:10180466 original size:186 final size:184
Alignment explanation
Indices: 10180154--10180525 Score: 471
Period size: 186 Copynumber: 2.0 Consensus size: 184
10180144 TCCGGCTAGG
* * **
10180154 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCAAGAAACGAGCGTGCGGGCACTCAG
* * *
10180219 TCAGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGATCGGTCCCCCCTACGTGCTGTCGATCC
66 TCAGCCGGAGAGGCAAAATGCGTAAGTCGGGGACCGGATCGGTCCCCCCTACGTGCTGTCGATCC
* * * ** *
10180284 TGCTGTCGTAACCCTCAGTCCGGTCTGATCTTAGATTGGGAATGAACTTCGTAT
131 TACTATCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTAT
** * *
10180338 GCTTAGACATGGAATGAACTCCGTATTTCTAAGCCTACCCAAGAAAAACGAGCGTGCGGGCACTC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCAAG--AAACGAGCGTGCGGGCACTC
* * *
10180403 AGTC-GACCTGAGAGGCAAAATGCGTAA-TCTGGGGACCGG-CCTGGTCCCCCCTGCGTGCTGTC
64 AGTCAG-CCGGAGAGGCAAAATGCGTAAGTC-GGGGACCGGATC-GGTCCCCCCTACGTGCTGTC
* * *
10180465 GATCTTACTATTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTAT
126 GATCCTACTATCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTAT
10180524 GC
1 GC
10180526 CTAAGTCAAC
Statistics
Matches: 160, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
184 37 0.23
185 4 0.03
186 119 0.74
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.23
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCAAGAAACGAGCGTGCGGGCACTCAG
TCAGCCGGAGAGGCAAAATGCGTAAGTCGGGGACCGGATCGGTCCCCCCTACGTGCTGTCGATCC
TACTATCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTAT
Found at i:10181421 original size:26 final size:26
Alignment explanation
Indices: 10181382--10181434 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10181372 GGCTCAAAAT
10181382 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
*
10181408 CTTAGACATG-GAATGAACTTCGTATG
1 CTTAGAC-TGCGAATGAACTCCGTATG
10181434 C
1 C
10181435 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:10182125 original size:26 final size:26
Alignment explanation
Indices: 10182089--10182141 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10182079 CTGGTCCGAT
10182089 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
10182115 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10182141 C
1 C
10182142 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10183169 original size:26 final size:26
Alignment explanation
Indices: 10183140--10183192 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10183130 CCGGTCCAAT
10183140 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10183166 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10183192 C
1 C
10183193 CTAAGTCATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10183532 original size:26 final size:26
Alignment explanation
Indices: 10183496--10183546 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
10183486 CTGGTCCAAT
*
10183496 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCAGTATC
* *
10183522 CTTAGATTGGGGATGAACTCAGTAT
1 CTTAGACTGGGAATGAACTCAGTAT
10183547 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATC
Found at i:10184069 original size:26 final size:26
Alignment explanation
Indices: 10184030--10184080 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
10184020 AGGTCGATCC
10184030 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
10184056 TAGACTGAGG-ATGAACTCCGTATGC
1 TAGACTG-GGAATGAACTCCGTATGC
10184081 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:10184426 original size:26 final size:26
Alignment explanation
Indices: 10184397--10184449 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10184387 CCGGTCTGAT
10184397 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
10184423 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10184449 C
1 C
10184450 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10184838 original size:159 final size:157
Alignment explanation
Indices: 10184422--10184859 Score: 465
Period size: 159 Copynumber: 2.8 Consensus size: 157
10184412 AACTCCGTAT
*
10184422 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGT-GGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGC-T-TCGGGCGCTCA
* * * **
10184486 ACCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCC-CCTGTGTGCTGTCGAT
64 ACCG-TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGATCCGGTCCCCTTATGTGTGCTGTCGAT
* * * *
10184550 GCTGCTACCTCAACCCTCGGTCTGATCTGA
128 GCTGCTACCACAACCCCCGATCTGAGCTGA
* * *
10184580 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGC-TTCGGGCGCTCA
* * * * * *
10184644 ATCGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGATCTGGTCCCCTTTTGTGTGCTGTCGGT
64 A-CCGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGATCCGGTCCCCTTATGTGTGCTGTCGAT
* *
10184709 -CTCGCTGCCACAACCCCCGATCTG-GCTGGG
128 GCT-GCTACCACAACCCCCGATCTGAGCT-GA
* *
10184739 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCTTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCTT-CGGGCGCTCA
* * * ** *
10184803 GCCAGCCGAAGAGGCAGAATGCGCAAGCCAAGGATCGGTCCGGTCCCCCTTATGTGT
64 ACC-GTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGATCCGGT-CCCCTTATGTGT
10184860 TGCCGATCCT
Statistics
Matches: 232, Mismatches: 37, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
157 2 0.01
158 101 0.44
159 117 0.50
160 12 0.05
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCTTCGGGCGCTCAAC
CGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGATCCGGTCCCCTTATGTGTGCTGTCGATGCT
GCTACCACAACCCCCGATCTGAGCTGA
Found at i:10184927 original size:26 final size:26
Alignment explanation
Indices: 10184898--10184950 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10184888 CCGATCTGAT
*
10184898 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
10184924 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
10184950 C
1 C
10184951 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:10185623 original size:26 final size:26
Alignment explanation
Indices: 10185583--10185632 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
10185573 CGATCCGATC
* *
10185583 TTAGATTGGGAATGAACTCTGTATGT
1 TTAGAATGGGAATGAACTCCGTATGT
*
10185609 TTAGAATGGGGATGAACTCCGTAT
1 TTAGAATGGGAATGAACTCCGTAT
10185633 ACCTAAGTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.10, G:0.28, T:0.34
Consensus pattern (26 bp):
TTAGAATGGGAATGAACTCCGTATGT
Found at i:10187224 original size:158 final size:155
Alignment explanation
Indices: 10186843--10187340 Score: 412
Period size: 157 Copynumber: 3.2 Consensus size: 155
10186833 AATATCGTAT
* * * * * * *
10186843 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGCGCGCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACAAAACGAGCGTGCGAGCACG-AG
* * * * * *
10186908 CCTGTCGGAGAGACAGAATGTGCAAGCCGTGGATCAACCCGATCCCCTTACGTGCTGTCAATCCT
65 CC-GTCGGAGAGGCAGAATGTGCAAGCCGGGGATCAACACGATCCCCCTACGTGCTGCCAATCCC
**
10186973 GCTACCGTAATCCTCGGTCCAGTTCGA
129 GCTACCACAATCCTCGGTCCAGTTCGA
* * * *
10187000 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCGACAAAACGAGCGTTC-AGGCACTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGACAACCCACAAAACGAGCGTGCGA-GCAC-G
* * * *
10187063 AGCCGATCGGAGAGGCATAATGTGCAAGCCGGGGATCGACACGATCCCCCTCCGCATGCTGCCAG
63 AGCCG-TCGGAGAGGCAGAATGTGCAAGCCGGGGATCAACACGATCCCCCTACG--TGCTGCCAA
* * *
10187128 TCCCGCTGCCACAA-CCTCGGTCC-GATTGGG
125 TCCCGCTACCACAATCCTCGGTCCAG-TTCGA
* *
10187158 GCTTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCACAAAACGGGCGTGCGAGCATCGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACAAAACGAGCGTGCGAGCA-CGAG
* ** * ** ** * * * ** * *
10187223 CCGGCCGGAGAGGCAGAATACGCAAGTCTAGGATCGGCCCGATCCCCCTGCATGCTATCGATCCT
65 CC-GTCGGAGAGGCAGAATGTGCAAGCCGGGGATCAACACGATCCCCCTACGTGCTGCCAATCCC
** * * *
10187288 GCTGTCGCAACCCTCGGTCCAGTCCGA
129 GCTACCACAATCCTCGGTCCAGTTCGA
*
10187315 TCTTAGAC-TGAGAATGAACTCCGTAT
1 GCTTAGACATG-GAATGAACTCCGTAT
10187341 ACTTAGACTA
Statistics
Matches: 273, Mismatches: 54, Indels: 28
0.77 0.15 0.08
Matches are distributed among these distances:
156 20 0.07
157 126 0.46
158 106 0.39
159 21 0.08
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACAAAACGAGCGTGCGAGCACGAGC
CGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCAACACGATCCCCCTACGTGCTGCCAATCCCGC
TACCACAATCCTCGGTCCAGTTCGA
Found at i:10188237 original size:26 final size:26
Alignment explanation
Indices: 10188197--10188247 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
10188187 TGATCCGATC
*
10188197 TTAGATTGGGAATGAACTCCATATGT
1 TTAGACTGGGAATGAACTCCATATGT
* *
10188223 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
10188248 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGT
Found at i:10189275 original size:159 final size:158
Alignment explanation
Indices: 10188924--10189281 Score: 391
Period size: 158 Copynumber: 2.3 Consensus size: 158
10188914 CAAAATCTTG
* * *
10188924 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGTTCAGCTGAT
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCGTTCAGCCGAC
* * * * * *
10188989 CGAAGAGGCAAAATGCACAAGTCGGGATGGGCTCGGTCCCTCCCTTCGTACTGTTGATCCTGCTA
66 CGAAGAGGCAAAATGCACAAGTCGGGATCGGCCCGGTCCCTCCCTGCGTACTATCGATCCTACTA
* * * *
10189054 CCATAACCCTCACTCTGGTCTGATCTTA
131 CCACAACCCTCACTCTGGACTGAGCATA
* * * * * *
10189082 GACTGGGAATCAACTCCGTATGCATAAGTCAACCCATGATACGAGCGTGCAGGCGTTGAGCCGAC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCGTTCAGCCGAC
* * *
10189147 CGAAGAGGCATAATGCGCAAGTCGAGGATCGGCCCGGTCCC-CCTCTGCGTGCTATCGAT-CTCA
66 CGAAGAGGCAAAATGCACAAGTCG-GGATCGGCCCGGTCCCTCC-CTGCGTACTATCGATCCT-A
* * *
10189210 CTGCCACAACCCTCAGTCT-GACTGGGGCATA
128 CTACCACAACCCTCACTCTGGACT-GAGCATA
* * *
10189241 GACAT-GGAGTGAACTCCCTATGCCTAAGCCAACCCACGAAA
1 GAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
10189282 TGGGCGTACG
Statistics
Matches: 163, Mismatches: 32, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
158 85 0.52
159 77 0.47
160 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (158 bp):
GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCGTTCAGCCGAC
CGAAGAGGCAAAATGCACAAGTCGGGATCGGCCCGGTCCCTCCCTGCGTACTATCGATCCTACTA
CCACAACCCTCACTCTGGACTGAGCATA
Found at i:10190969 original size:158 final size:159
Alignment explanation
Indices: 10190468--10190969 Score: 396
Period size: 158 Copynumber: 3.2 Consensus size: 159
10190458 ACTCCATATG
** * *
10190468 CTTAGACATGGAATGAACTCTTTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
* * * * * ** * * **
10190533 AGACCGGAGAGGTAGAATGA-GCAAGCCGAGGTTTAGCTCGGTACCCTT-CTATGTGCTA-TCGA
66 CGACCGGAGAGGCAGAAT-ACGTAAGTCGAGGATCGGC-CCG-ATCCTTCCTGCGTGCTAGTCGA
* * *
10190595 TCCTGCTATTGTAACCCTCGGTCCGGTCCGAT
128 TCCTGCTGTCGTAACCCTCGGTCCGGTCTGAT
* * * * * * *
10190627 CATAGA-TTGGAAAAGAACTCCGTATGCATAAGTCAACCCACG-AACGAACGTGCGGTCGCTGAG
1 CTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* * * * * ** * *
10190690 CC-AGCCGAAGAAGCATAATGCGTAAGTCGGGGATCGGCCCGATCCCCCTCTGCATGCT-GTCGG
65 CCGA-CCGGAGAGGCAGAATACGTAAGTCGAGGATCGGCCCGATCCTTC-CTGCGTGCTAGTCGA
* * ** ** * **
10190753 T-CTCACTGCCACAACCCTTAGTCC-GACTGGGG
128 TCCT-GCTGTCGTAACCCTCGGTCCGGTCT-GAT
* * * *
10190785 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTGAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
* *
10190850 CGACCGGAGAGGCAGAATACGTAAGTCGAAGATCGGCCTGATCCTTCCTGCGTG-TAGTCGATCC
66 CGACCGGAGAGGCAGAATACGTAAGTCGAGGATCGGCCCGATCCTTCCTGCGTGCTAGTCGATCC
10190914 TGCTGTCGTAACCCTCGGTCCGGTCTGAT
131 TGCTGTCGTAACCCTCGGTCCGGTCTGAT
*
10190943 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
10190970 TTATACTGGG
Statistics
Matches: 252, Mismatches: 76, Indels: 31
0.70 0.21 0.09
Matches are distributed among these distances:
156 3 0.01
157 9 0.04
158 147 0.58
159 92 0.37
160 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
CGACCGGAGAGGCAGAATACGTAAGTCGAGGATCGGCCCGATCCTTCCTGCGTGCTAGTCGATCC
TGCTGTCGTAACCCTCGGTCCGGTCTGAT
Found at i:10190972 original size:26 final size:26
Alignment explanation
Indices: 10190943--10190995 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10190933 CCGGTCTGAT
10190943 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
10190969 CTTATACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
10190995 C
1 C
10190996 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:10191505 original size:26 final size:26
Alignment explanation
Indices: 10191469--10191521 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10191459 CCGGTCAGAT
* *
10191469 CTTAGACTGGGAATGAAGTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
10191495 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10191521 C
1 C
10191522 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10191939 original size:342 final size:343
Alignment explanation
Indices: 10191310--10192248 Score: 1181
Period size: 342 Copynumber: 2.7 Consensus size: 343
10191300 AACTTCATAT
** * * * *
10191310 GCTTAGACATGGAATGAACTCCAAATGACTAAGCCAACCCACGAAACGAGCGTGCTGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * * * * *
10191375 TCGGCCT-AAAAGGCAAAATGCGCAAGCCGAGGACCGGCCCGGTCCCCTCTTGTGTGCTG-TCGA
66 TCGG-CTGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCC-CCTGCGTGCTGCT-GA
** * * * *
10191438 TCCTAATGCCGCAACCCTC-GACCGGTCAGATCTTAGACTGGGAATGAAGTTCGTATGCTTAGAT
128 TCCTGCTGCCGTAACCCTCGGCCCAGTCAGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAT
* * * * *
10191502 TGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCATACGGGGGCTGAGCCGACTGG
193 TAGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGGGCTGAGCCGACTGA
* * * * * *
10191567 AGAGGCATCATGCGTAAGCTGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCTCACTGCC
258 AGAGGCATAATGCGTAAGCTGAGCATCGACCCGATCCCCCTCTGCGTGCTGCCGATCTCACTACC
* *
10191632 ACAACCCTCAGTCCGGCTGGG
323 ACAACCCTCAGTCCAGCTAGG
10191653 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * * * * *
10191718 TCGGCTGGGGAGGCAGAATGGGTAAGTCGAGG-TCGGCCCGGTCCCCCCTGCGTGCTGCTAATCT
66 TCGGCTGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGCTGATCC
* * * * * *
10191782 TGCTGTCGTAACCCTCGGCCCAGTCTGATCATAGACTGGGAATGAACTCCGTAAGCTTAGACTAG
131 TGCTGCCGTAACCCTCGGCCCAGTCAGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTAG
** * *
10191847 AAATGAACTCCGTATGCCTAAGTGAACCCACAAAACGAGCGTGTGGGGGCTGAGCCGA-TCGAAG
196 GGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGGGCTGAGCCGACT-GAAG
* * *
10191911 AGGCATAATGCGTAAG-TCGAGCATCGACCCGATCCCCCTCTGCGTGCTGCCGGTCTCGCTACTA
260 AGGCATAATGCGTAAGCT-GAGCATCGACCCGATCCCCCTCTGCGTGCTGCCGATCTCACTACCA
*
10191975 CAACCCTCGGTCCAGCTAGG
324 CAACCCTCAGTCCAGCTAGG
* * *
10191995 GCTTAGACATGGAATGAACTCCCTAAGCCTAAGCTAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * ** *
10192060 CCGG-TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGATCCGGTCCCCCCTGCGTGCTGCCGATC
66 TCGGCT-GGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGCTGATC
* * * *
10192124 CTGCTGCCGTAACCCTCGACCTAGTCCGATCTTAGACTGAGAATGAACTTCGTATGCTTAGATTA
130 CTGCTGCCGTAACCCTCGGCCCAGTCAGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTA
* * *
10192189 GGGATGAACTCCGCATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGAC
195 GGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGGGCTGAGCCGAC
10192249 CAGAGAGGCA
Statistics
Matches: 507, Mismatches: 81, Indels: 15
0.84 0.13 0.02
Matches are distributed among these distances:
341 27 0.05
342 265 0.52
343 215 0.42
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (343 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
TCGGCTGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGCTGATCC
TGCTGCCGTAACCCTCGGCCCAGTCAGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTAG
GGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGGGCTGAGCCGACTGAAGA
GGCATAATGCGTAAGCTGAGCATCGACCCGATCCCCCTCTGCGTGCTGCCGATCTCACTACCACA
ACCCTCAGTCCAGCTAGG
Found at i:10192912 original size:26 final size:26
Alignment explanation
Indices: 10192874--10192929 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
10192864 GGCTCAAAAT
10192874 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10192900 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10192926 CTTA
1 CTTA
10192930 AGCCAACCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.