Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 53 of 402
Found at i:10193248 original size:157 final size:159
Alignment explanation
Indices: 10192909--10193281 Score: 401
Period size: 157 Copynumber: 2.4 Consensus size: 159
10192899 GCTTAGACAT
* * * * *
10192909 GGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGTCGAAG
1 GGAATAAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGTCGAAG
* * * * **
10192974 AGGCAAAATGCACAAGTCGGGGATGGGCTCGGTCCCCCCATTCGTACTGTTGATCCTGCTACCAT
66 AGGCAAAATGCACAAGTCGGGGATCGGCCCAGTCCCCCCATGCGTACTGCCGATCCTGCTACCAT
** * *
10193039 AACCCTCACTCCGGTCTGATCTTAGACTG
131 AACCCTCACTCCGGTCCAATCATAGACTA
* * *
10193068 GGAATCAACTCCGTATGCATAAGTCAACCCATGATACGAGCGTGCGGGCGCTGAGCCAGTCGAA-
1 GGAATAAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGTCGAAG
* ** * ** *
10193132 AGGGCAGAATGCGTAAG-CGGGGATCGGCCCAGTCCCCCC-TGCGTGCTGCCGATCCTGCTGTCG
66 A-GGCAAAATGCACAAGTCGGGGATCGGCCCAGTCCCCCCATGCGTACTGCCGATCCTGCTACCA
* ** *
10193195 TGACCCTCGGTCTGGTCCAATCATAGACTA
130 TAACCCTCACTCCGGTCCAATCATAGACTA
* ** * * *
10193225 GGAATAAACTCCGTATGCCTAAGTCAACCCGCGAAATGAGCATGCAGGCGCTCAGCC
1 GGAATAAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
10193282 GACCATAGAG
Statistics
Matches: 176, Mismatches: 37, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
157 87 0.49
158 20 0.11
159 69 0.39
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
GGAATAAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGTCGAAG
AGGCAAAATGCACAAGTCGGGGATCGGCCCAGTCCCCCCATGCGTACTGCCGATCCTGCTACCAT
AACCCTCACTCCGGTCCAATCATAGACTA
Found at i:10194442 original size:26 final size:26
Alignment explanation
Indices: 10194413--10194463 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
10194403 CCGGTTTGAT
10194413 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
* *
10194439 CTTAGACTGGGGATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
10194464 GCCTAAGTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:10195357 original size:26 final size:26
Alignment explanation
Indices: 10195319--10195397 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
10195309 CCGATCTGAT
*
10195319 CTTAGACTAGGAATG-ACATCCGTATG
1 CTTAGACTGGGAATGAAC-TCCGTATG
10195345 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10195371 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10195397 C
1 C
10195398 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 48 0.96
27 2 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10198670 original size:26 final size:26
Alignment explanation
Indices: 10198619--10198670 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10198609 GGCTCAAAAT
*
10198619 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10198645 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
10198671 GCAAAGCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10199028 original size:159 final size:158
Alignment explanation
Indices: 10198644--10199062 Score: 434
Period size: 158 Copynumber: 2.7 Consensus size: 158
10198634 AACTCTATAT
*
10198644 GCTTAGACATGGAATGAACTCCGTATGGCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
10198709 TCGACTGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCACGAGCTGTTGATCC
66 CCGACTGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCAGGTCCCCCCCACGAGCTGTCGATCC
* ** **
10198774 TGCTACTGCAACCCTCGGTCTGGTCTGA
131 CGCTACCACAACCCTCGGTCCAGTCTGA
* * * * *** * *
10198802 TCATAGAC-TGGGAATGAACTCCGTATGGATAAGTCAACCCACGAAACGAGCGTGCAAACGGTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGGCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
10198866 GCCGA-TCGAAGAGGCATAATGCGCAAGCTGGGGATCGGCCAGGTACCCCTCTACGTGCTGTCGG
65 GCCGACT-GAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCAGGT-CCCCCCCACGAGCTGTCGA
* * *
10198930 TCCCGCTGCCACAACTCTCGGTCCAGT-TAGG
128 TCCCGCTACCACAACCCTCGGTCCAGTCT-GA
* * * * *
10198961 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACAAACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
10199026 CCGGCTGGAG-GGCAGAATGAGCAA-CCGGGGATCGGCC
66 CCGACTGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCC
10199063 CGATCCTCCA
Statistics
Matches: 207, Mismatches: 48, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
157 14 0.07
158 101 0.49
159 90 0.43
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.30, T:0.16
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACTGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCAGGTCCCCCCCACGAGCTGTCGATCC
CGCTACCACAACCCTCGGTCCAGTCTGA
Found at i:10199595 original size:158 final size:159
Alignment explanation
Indices: 10199294--10199639 Score: 392
Period size: 159 Copynumber: 2.2 Consensus size: 159
10199284 TCCCGCTGTT
* * ** **
10199294 GGTCCTGCTGCCATAGCCTTCGGTCCGACTGGGGCTTAGACATGGGAATGAACTCTGTATGCCTA
1 GGTCCTGCTGCCATAACCCTCGGTCCGGTTGGGGCTTAGACATGGGAATGAACTCCCTATGCCTA
* * * * * * *
10199359 AGTCAACCCACGACATGAGCGTGCAGGCGCTGAGCAGACGGGAGAGGCATAATGCACAAGCCGGG
66 AGCCAACCCACGAAATGAGCATGCAGGCACTAACCAGACGGGAGAGGCAAAATGCACAAGCCGGG
* * * * *
10199424 GATTGGCCCGGTCCCTCTCTACGTGCTATC
131 GATCGACCCGGTCCC-CCCTACATGCTACC
* *
10199454 GGTCCCGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTA
1 GGTCCTGCTGCCATAACCCTCGGTCCGGTTGGGGCTTAGACATGGGAATGAACTCCCTATGCCTA
* * * * *
10199518 AGCCAACCCATGAAATGGGCATGC-GGCACTCAACCGGTC-GGAGAGGCAAAATGCGCAAGCCGG
66 AGCCAACCCACGAAATGAGCATGCAGGCACT-AACCAGACGGGAGAGGCAAAATGCACAAGCCGG
*
10199581 GGATCGACCTGGTCCCCCCTACATGCTACC
130 GGATCGACCCGGTCCCCCCTACATGCTACC
* * *
10199611 GATCCTGCTGTCGTAACCCTCGGTCCGGT
1 GGTCCTGCTGCCATAACCCTCGGTCCGGT
10199640 CTGATCTTAG
Statistics
Matches: 154, Mismatches: 31, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
157 35 0.23
158 40 0.26
159 42 0.27
160 37 0.24
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (159 bp):
GGTCCTGCTGCCATAACCCTCGGTCCGGTTGGGGCTTAGACATGGGAATGAACTCCCTATGCCTA
AGCCAACCCACGAAATGAGCATGCAGGCACTAACCAGACGGGAGAGGCAAAATGCACAAGCCGGG
GATCGACCCGGTCCCCCCTACATGCTACC
Found at i:10199686 original size:26 final size:26
Alignment explanation
Indices: 10199645--10199697 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10199635 CCGGTCTGAT
10199645 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
* *
10199671 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
10199697 C
1 C
10199698 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:10202353 original size:26 final size:26
Alignment explanation
Indices: 10202317--10202369 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10202307 CCGATCTGAT
*
10202317 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACATCGTATG
*
10202343 CTTAGACTGGGGATGAACATCGTATG
1 CTTAGACTGGGAATGAACATCGTATG
10202369 C
1 C
10202370 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACATCGTATG
Found at i:10203079 original size:26 final size:26
Alignment explanation
Indices: 10203040--10203092 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10203030 GGCTCAAACT
10203040 CTTAGACTGCGAATGAACTCTGTATG
1 CTTAGACTGCGAATGAACTCTGTATG
10203066 CTTAGACATG-GAATGAACTCTGTATG
1 CTTAGAC-TGCGAATGAACTCTGTATG
10203092 C
1 C
10203093 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCTGTATG
Found at i:10203409 original size:158 final size:159
Alignment explanation
Indices: 10203065--10203409 Score: 362
Period size: 158 Copynumber: 2.2 Consensus size: 159
10203055 AACTCTGTAT
* * * *
10203065 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCACCAAAATGAGTGTACGGGTGCTCA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACCAAAACGAGCGTACGGGCGCTCA
* *
10203130 GCAGGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTCTACATGCTTCATTC
66 GCAGGCCGGAGAGCTAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTACATGCTTCATTC
* * *
10203195 CCGCTGCCACAACCCTCAGTCCGACTAGG
131 CCACTACCACAACCCTCAGTCCGACTAGA
* ** * * *
10203224 GCTAAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA-CGAAACGGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACCAAAACGAGCGTACGGGCGCTCA
* ** *
10203288 GTC-GGCCGGAGAGCTAGAATGCTCAAGCTGGGGATCGACCCGATCCCCC-CTGCATGCTGTCGA
66 G-CAGGCCGGAGAGCTAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTACATGCT-TC-A
* * ** *
10203351 -TCCTACTATCGTAACCCTC-GATCCAGTCT-GA
128 TTCCCACTACCACAACCCTCAG-TCC-GACTAGA
*
10203382 TCTTAGAC-TAGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCTGTATGC
10203410 TTAGACTGGG
Statistics
Matches: 152, Mismatches: 28, Indels: 13
0.79 0.15 0.07
Matches are distributed among these distances:
157 10 0.07
158 100 0.66
159 42 0.28
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACCAAAACGAGCGTACGGGCGCTCA
GCAGGCCGGAGAGCTAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTACATGCTTCATTC
CCACTACCACAACCCTCAGTCCGACTAGA
Found at i:10203412 original size:26 final size:26
Alignment explanation
Indices: 10203383--10203435 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10203373 CCAGTCTGAT
*
10203383 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTATATG
* *
10203409 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCTATATG
10203435 C
1 C
10203436 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTATATG
Found at i:10203558 original size:12 final size:12
Alignment explanation
Indices: 10203541--10203565 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10203531 CCCTCTGCGT
10203541 GCTGTCGATCCC
1 GCTGTCGATCCC
10203553 GCTGTCGATCCC
1 GCTGTCGATCCC
10203565 G
1 G
10203566 TTGCTGGCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.40, G:0.28, T:0.24
Consensus pattern (12 bp):
GCTGTCGATCCC
Found at i:10203963 original size:26 final size:26
Alignment explanation
Indices: 10203934--10203986 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10203924 CTGGTCCGAT
* *
10203934 CTTAGATTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
10203960 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
10203986 C
1 C
10203987 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:10204375 original size:158 final size:157
Alignment explanation
Indices: 10203959--10204377 Score: 443
Period size: 158 Copynumber: 2.6 Consensus size: 157
10203949 AACTCTGTAT
* * * *
10203959 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATC-AGTGTGCGGGTGCTCA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-CGAGCGTGCGGGCGCTCA
** * * * * * *
10204023 ATCGATCGGAGAGGTAGAATGCGTAAGCTGGGGATCGGTCCGGTCCCCCTTTACGTGCTATCGAT
65 GCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATC-GACCGATCCCCCTGTA-GTGCTATCGAT
* *
10204088 CCCGCTGCCACAACCCTCGGTCCGACTAGG
128 CCCACTGCCACAACCCTCGGTCCGACTAGA
* * * * *
10204118 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
10204182 GCCGACTGGAGAGGTAGAATGCGCAAGTCGAGGATCGACCTGATCCCCCCTGT-GTGCTGTCGAT
65 GCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACC-GAT-CCCCCTGTAGTGCTATCGAT
* ** *
10204246 CCTACTGCCGTAACCCTCGGTCCGGTCT-GA
128 CCCACTGCCACAACCCTCGGTCC-GACTAGA
* *
10204276 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
10204341 CCGACCAGAGAGGCA-AGATGCACAAGCCGGGGATCGA
66 CCGACCGGAGAGGTAGA-ATGCGCAAGCCGGGGATCGA
10204378 ATGGGTGGTA
Statistics
Matches: 213, Mismatches: 40, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
157 2 0.01
158 119 0.56
159 84 0.39
160 8 0.04
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCGATCCCCCTGTAGTGCTATCGATCCC
ACTGCCACAACCCTCGGTCCGACTAGA
Found at i:10205017 original size:26 final size:27
Alignment explanation
Indices: 10204988--10205045 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
10204978 CCAATCTGAT
*
10204988 CTTAGAC-TGGGAATGAACTCTGTATG-
1 CTTAGACTTGGG-ATGAACTCTGCATGC
10205014 CTTAGACTTGGGATGAACTCTGCATGC
1 CTTAGACTTGGGATGAACTCTGCATGC
10205041 CTTAG
1 CTTAG
10205046 TCAACCCATG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 20 0.69
27 9 0.31
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (27 bp):
CTTAGACTTGGGATGAACTCTGCATGC
Found at i:10205114 original size:13 final size:13
Alignment explanation
Indices: 10205078--10205117 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
10205068 GGATGCTCAA
10205078 CCGACCGGAGAGG
1 CCGACCGGAGAGG
**
10205091 CCGACTAGAGAGG
1 CCGACCGGAGAGG
*
10205104 TCGACCGGAGAGG
1 CCGACCGGAGAGG
10205117 C
1 C
10205118 ATAATGCGCA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.25, C:0.28, G:0.42, T:0.05
Consensus pattern (13 bp):
CCGACCGGAGAGG
Found at i:10205518 original size:185 final size:183
Alignment explanation
Indices: 10205208--10205577 Score: 467
Period size: 185 Copynumber: 2.0 Consensus size: 183
10205198 TCCGGCTAGG
* * **
10205208 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCAAGAAACGAGCGTGCGGGCACTCAG
* * *
10205273 TCAGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGATCGGTCCCCCTACGTGCTGTCGATCCT
66 TCAGCCGGAGAGGCAAAATGCGTAAGTCGGGGACCGGATCGGTCCCCCTACGTGCTGTCGATCCT
* * * ** *
10205338 GCTGTCGTAACCCTCAGTCCGGTCTGATCTTAGATTGGGAATGAACTTCGTAT
131 ACTATCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTAT
** * *
10205391 GCTTAGACATGGAATGAACTCCGTATTTCTAAGCCTACCCAAGAAAAACGAGCGTGCGGGCACTC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCAAG--AAACGAGCGTGCGGGCACTC
* * *
10205456 AGTC-GACCTGAGAGGCAAAATGCGTAA-TCTGGGGACCGG-CCTGGTCCCCCTGCGTGCTGTCG
64 AGTCAG-CCGGAGAGGCAAAATGCGTAAGTC-GGGGACCGGATC-GGTCCCCCTACGTGCTGTCG
* * *
10205518 ATCTTACTATTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTAT
126 ATCCTACTATCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTAT
10205576 GC
1 GC
10205578 CTAAGTCAAC
Statistics
Matches: 159, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
183 37 0.23
184 4 0.03
185 118 0.74
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCAAGAAACGAGCGTGCGGGCACTCAG
TCAGCCGGAGAGGCAAAATGCGTAAGTCGGGGACCGGATCGGTCCCCCTACGTGCTGTCGATCCT
ACTATCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTAT
Found at i:10206474 original size:26 final size:26
Alignment explanation
Indices: 10206435--10206487 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10206425 GGCTCAAAAT
10206435 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
*
10206461 CTTAGACATG-GAATGAACTTCGTATG
1 CTTAGAC-TGCGAATGAACTCCGTATG
10206487 C
1 C
10206488 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:10207180 original size:26 final size:26
Alignment explanation
Indices: 10207144--10207196 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10207134 CTGGTCCGAT
10207144 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
10207170 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10207196 C
1 C
10207197 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10208220 original size:26 final size:26
Alignment explanation
Indices: 10208191--10208243 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10208181 CCGGTCCAAT
10208191 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10208217 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10208243 C
1 C
10208244 CTAAGTCATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10208583 original size:26 final size:26
Alignment explanation
Indices: 10208547--10208597 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
10208537 CTGGTCCAAT
10208547 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
* *
10208573 CTTAGATTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
10208598 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:10209477 original size:26 final size:26
Alignment explanation
Indices: 10209448--10209500 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10209438 CCGGTCTGAT
10209448 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
10209474 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10209500 C
1 C
10209501 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10209660 original size:355 final size:347
Alignment explanation
Indices: 10208572--10209679 Score: 925
Period size: 355 Copynumber: 3.1 Consensus size: 347
10208562 AACTCCGTAT
* * * *
10208572 CCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGTGGGCGCTCAG
1 CCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * * *
10208637 TCGACCGAAGAGGCAGAATGCACAAGCTAGGGATCGGCCCGGTCCCCTCTTACCTGTTG-CTGAT
66 CCGACC-AAGAGG-AGAATGCGCAAGCTAGGGATCGGCCCGGT-CCCTCCTGCGTGCTGTC-GAT
* * * *
10208701 GCTACGACTGGTCCTACTACCACAACCCTCGAT-ATGGT-TCGATCTTAGACTAGGAACGAACTC
127 CCT--G--TGGTCCTGCTACCACAACCCTCGATCA-GGTCT-GATCTTAGACTGGGAATGAACTC
* * * * * *
10208764 TGTATGCTTAGACATCGAATGAACTCCATATGCCAAAACCAACCCACGAAACGAGCATGCGGCCG
186 CGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCG
* * * * * * * * *
10208829 CCCAGCCGACCGAAGAGGCAGAATGTGCAAGTCGGGGATCGGCTTGATCTCCCCTACGTGCTGTC
251 CTCAGCCGACCGGAGAGGCAGAATGCGTAAGTCGAGGATCGACCTGATCCCCCCTGCGTGCTGTC
* * * *
10208894 GATCCTGCTAGCGCAACCCTTGGTCTGGTTTGA
316 GATCCTGCTA-CCCAACCCTCGGTCTGATCTGA
* * *
10208927 CCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAA
1 CCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * *
10208992 CCGACC----GGAG-AGGTGCAAGCTAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTTGATCC--
66 CCGACCAAGAGGAGAATGCGCAAGCTAGGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGATCCTG
* * *
10209050 T-G--CTG-T--CACAACCCTCAGTTCAGGTC-GATCCTAGACTGGGTATGAACTCCGTATGCTT
131 TGGTCCTGCTACCACAACCCTC-GATCAGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * *
10209108 AGAC-TGAAGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGCCG
195 AGACATGGA-ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCG
* * * *
10209172 ATCGGAGAGGCCAACTGGAGAGGCATAA-TCCATAAGTCAGGGATC-AGCCTGGTCCCCCTCTGC
259 ACCGGAGAGG-C-A---GA-ATGCGTAAGT-C----G--A-GGATCGA-CCTGATCCCCC-CTGC
** * * * * *
10209235 GTTTTG-CTGATCCCGCTGTCCCAACCCTCGATAC--AGCTGGG
308 GTGCTGTC-GATCCTGCT-ACCCAACCCTCGGT-CTGATCT-GA
* * * * *
10209276 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCCTGCGGGTGCTCA
1 CCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * *
10209340 GCCAACCAAAGAGGAAGAATGCGCAAGC-CGTGGATCGGCCCGATCCCTTCCTGCGTGCTGTCGA
65 GCCGACC-AAGAGG-AGAATGCGCAAGCTAG-GGATCGGCCCGGTCCC-TCCTGCGTGCTGTCGA
* * *
10209404 TCCTGTTGTTGGTCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
126 TCC---TG-TGGTCCTGCTACCACAACCCTCGATCAGGTCTGATCTTAGACTGGGAATGAACTCC
* * *
10209469 GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGTGGGCGC
187 GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGC
* * *
10209534 TCAACCGACCGGAGAGGCAGAATGCGTAAGTCGAGGATCGACCCGATCCCCCCTGTGTGCTGTCG
252 TCAGCCGACCGGAGAGGCAGAATGCGTAAGTCGAGGATCGACCTGATCCCCCCTGCGTGCTGTCG
*
10209599 ATGCTGCTACCTCAACCCTCGGTCTGATCTGA
317 ATCCTGCTACC-CAACCCTCGGTCTGATCTGA
* * * *
10209631 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCATGAAACGA
1 CCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
10209680 CCGTTCGGGC
Statistics
Matches: 592, Mismatches: 105, Indels: 112
0.73 0.13 0.14
Matches are distributed among these distances:
334 2 0.00
335 95 0.16
336 6 0.01
337 3 0.01
338 2 0.00
340 4 0.01
341 6 0.01
345 1 0.00
347 14 0.02
348 38 0.06
349 89 0.15
350 4 0.01
354 6 0.01
355 134 0.23
356 41 0.07
357 19 0.03
359 1 0.00
363 8 0.01
364 4 0.01
366 3 0.01
367 2 0.00
368 8 0.01
369 99 0.17
370 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (347 bp):
CCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CCGACCAAGAGGAGAATGCGCAAGCTAGGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGATCCTG
TGGTCCTGCTACCACAACCCTCGATCAGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGAC
CGGAGAGGCAGAATGCGTAAGTCGAGGATCGACCTGATCCCCCCTGCGTGCTGTCGATCCTGCTA
CCCAACCCTCGGTCTGATCTGA
Found at i:10209899 original size:159 final size:157
Alignment explanation
Indices: 10209473--10209911 Score: 428
Period size: 159 Copynumber: 2.8 Consensus size: 157
10209463 AACTCCGTAT
*
10209473 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGT-GGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGC-T-TCGGGCGCTCA
* * * * * *
10209537 ACCGACCGGAGAGGCAGAATGCGTAAGTCGAGGATCGACCCGATCCCCC-CTGTGTGCTGTCGAT
64 ACCGACCGAAGAGGCAGAATGCGCAAG-CCAGGATCGATCCGGTCCCCCTTTGTGTGCTGTCGAT
* * *
10209601 GCTGCTACCTCAACCCTCGGTCTGATCTGA
128 GCTGCTACCACAACCCTCGATCTGAGCTGA
* * * * *
10209631 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAAACCATGAAACGACCGTTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGC-TTCGGGCGCTCA
* * * * * *
10209695 ATCGGTCGGAA-AGGCATAATGCGCAAGCCGGAGATCGATCTGGTCCCCCTTTGTGTGCTG-C-A
64 A-CCGACCGAAGAGGCAGAATGCGCAAGCCAG-GATCGATCCGGTCCCCCTTTGTGTGCTGTCGA
* * *
10209757 GGTCTCGCTGCCACAACCCTCGATCTG-GCTGGG
127 TG-CT-GCTACCACAACCCTCGATCTGAGCT-GA
* *
10209790 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCTTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCTT-CGGGCGCTCA
* *
10209854 GCC-AGCCGAAGAGGCAGAATGCGCAAGCCAAGGATCGGTCCGGTCCCCCTTATGTGTG
64 ACCGA-CCGAAGAGGCAGAATGCGCAAGCC-AGGATCGATCCGGTCCCCCTT-TGTGTG
10209912 GCCGATCCTG
Statistics
Matches: 226, Mismatches: 40, Indels: 28
0.77 0.14 0.10
Matches are distributed among these distances:
157 6 0.03
158 95 0.42
159 117 0.52
160 8 0.04
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCTTCGGGCGCTCAAC
CGACCGAAGAGGCAGAATGCGCAAGCCAGGATCGATCCGGTCCCCCTTTGTGTGCTGTCGATGCT
GCTACCACAACCCTCGATCTGAGCTGA
Found at i:10209978 original size:26 final size:26
Alignment explanation
Indices: 10209949--10210001 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10209939 CCGATCTGAT
* *
10209949 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGAATGGGAATAAACTCCGTATG
* *
10209975 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATAAACTCCGTATG
10210001 C
1 C
10210002 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATAAACTCCGTATG
Found at i:10210674 original size:26 final size:26
Alignment explanation
Indices: 10210634--10210683 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
10210624 CGATCCGATC
* *
10210634 TTAGATTGGGAATGAACTCTGTATGT
1 TTAGAATGGGAATGAACTCCGTATGT
*
10210660 TTAGAATGGGGATGAACTCCGTAT
1 TTAGAATGGGAATGAACTCCGTAT
10210684 ACCTAAGTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.10, G:0.28, T:0.34
Consensus pattern (26 bp):
TTAGAATGGGAATGAACTCCGTATGT
Found at i:10212300 original size:158 final size:157
Alignment explanation
Indices: 10211895--10212392 Score: 443
Period size: 157 Copynumber: 3.2 Consensus size: 157
10211885 AATATCATAT
* * * * ** *
10211895 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGCGCGCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACAAAACGAGCGTGCAGGCACG-AG
* * * * * *
10211960 CCTGTCGGAGAGACAGAATGTGCAAGCCGTGGATCAACCCGATCCCCTTACG--TGCTGTCAATC
65 CCGGTCGGAGAGGCAGAATGTGCAAGCCGAGGATCGACCCGATCCCCCT-CGCATGCTGCCAATC
* **
10212023 CTGCTACCGTAATCCTCGGTCCAGTTCGA
129 CCGCTACCACAATCCTCGGTCCAGTTCGA
* * * *
10212052 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCGACAAAACGAGCGTTCAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGACAACCCACAAAACGAGCGTGCAGGCAC-GA
* * * * *
10212116 GCCGATCGGAGAGGCATAATGTGCAAGCCGGGGATCGACACGATCCCCCTCCGCATGCTGCCAGT
64 GCCGGTCGGAGAGGCAGAATGTGCAAGCCGAGGATCGACCCGATCCCCCT-CGCATGCTGCCAAT
* * *
10212181 CCCGCTGCCACAA-CCTCGGTCC-GATTGGG
128 CCCGCTACCACAATCCTCGGTCCAG-TTCGA
* * *
10212210 GCTTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCACAAAACGGGCGTGCAAGCATCGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACAAAACGAGCGTGCAGGCA-CGAG
* ** * * * ** *
10212275 CCGGCCGGAGAGGCAGAATACGCAAGTCTAGGATCGGCCCGATCCCCCT-GCATGCTATCGATCC
65 CCGGTCGGAGAGGCAGAATGTGCAAGCCGAGGATCGACCCGATCCCCCTCGCATGCTGCCAATCC
* ** ** * *
10212339 TGCTGTCGTAACCCTCGGTCCAGTCCGA
130 CGCTACCACAATCCTCGGTCCAGTTCGA
*
10212367 TCTTAGAC-TGAGAATGAACTCCGTAT
1 GCTTAGACATG-GAATGAACTCCGTAT
10212393 ACTTAGACTA
Statistics
Matches: 274, Mismatches: 57, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
156 21 0.08
157 127 0.46
158 107 0.39
159 19 0.07
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACAAAACGAGCGTGCAGGCACGAGC
CGGTCGGAGAGGCAGAATGTGCAAGCCGAGGATCGACCCGATCCCCCTCGCATGCTGCCAATCCC
GCTACCACAATCCTCGGTCCAGTTCGA
Found at i:10214332 original size:159 final size:158
Alignment explanation
Indices: 10213981--10214338 Score: 400
Period size: 158 Copynumber: 2.3 Consensus size: 158
10213971 CAAAATCTTG
* *
10213981 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCGTTCAGCTGAT
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCGTTCAGCCGAC
* * * * *
10214046 CGAAGAGGCAAAATGCACAAGTCGGGATGGGCTCGGTCCCTCCCTTCGTACTGTCGATCCTGCTA
66 CGAAGAGGCAAAATGCACAAGTCGGGATCGGCCCGGTCCCTCCCTGCGTACTATCGATCCTACTA
* * * *
10214111 CCATAACCCTCACTCTGGTCTGATCTTA
131 CCACAACCCTCACTCTGGACTGAGCATA
* * * * * *
10214139 GACTGGGAATCAACTCCGTATGCATAAGTCAACCCATGATACGAGCGTGCAGGCGTTGAGCCGAC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCGTTCAGCCGAC
* ** *
10214204 CGAAGAGGCATAATGCGTAAGTCGAGGATCGGCCCGGTCCC-CCTCTGCGTGCTATCGAT-CTCA
66 CGAAGAGGCAAAATGCACAAGTCG-GGATCGGCCCGGTCCCTCC-CTGCGTACTATCGATCCT-A
* * *
10214267 CTGCCACAACCCTCAGTCT-GACTGGGGCATA
128 CTACCACAACCCTCACTCTGGACT-GAGCATA
* * *
10214298 GACAT-GGAGTGAACTCCCTATGCCTAAGCCAACCCACGAAA
1 GAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
10214339 TAGGCGTATG
Statistics
Matches: 164, Mismatches: 31, Indels: 9
0.80 0.15 0.04
Matches are distributed among these distances:
158 85 0.52
159 78 0.48
160 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (158 bp):
GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCGTTCAGCCGAC
CGAAGAGGCAAAATGCACAAGTCGGGATCGGCCCGGTCCCTCCCTGCGTACTATCGATCCTACTA
CCACAACCCTCACTCTGGACTGAGCATA
Found at i:10216018 original size:158 final size:158
Alignment explanation
Indices: 10215525--10216019 Score: 412
Period size: 158 Copynumber: 3.1 Consensus size: 158
10215515 ACTCCATATG
** * *
10215525 CTTAGACATGGAATGAACTCTTTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
* * * * * ** * *
10215590 CGACCGGAGAGGTAGAATGAGCAAGCCGAGGTTTAGCTCGGTACCCTTCTAT--GTGCTA-TCGA
66 CGACCGGAGAGGCAGAATGCGTAAGTCGAGGATCGGC-CCG-ATCCTTCTATGCGTGC-AGTCGA
* * ***
10215652 TCTTGCTATTGTAACCCTCGGTCCGGTCTGAT
128 TCCTACTGCCGTAACCCTCGGT-CGGTCTGAT
* * * * * * * *
10215684 CATAGA-TTGGAAAAGAACTCCGTATGCATAAGTCAACCCACG-AACGAACGTGCGGTCGCTGAG
1 CTTAGACATGG-AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* * * * ** * * * *
10215747 CCGGCCGAAGAGGCATAATGCGTAAGTCGGGGATCGGCCCGATCCCCCTCTGCATGCTGTCGGT-
65 CCGACCGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCCCGATCCTTCTATGCGTGCAGTCGATC
** ** * * **
10215811 CTCACTGCCACAACCCTTAGTCCGACTGGGG
130 CT-ACTGCCGTAACCCTCGGTCGGTCT-GAT
* * *
10215842 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTGAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
* *
10215907 CGACCGGAGAGGCAGAATGCGTAAGTCGAAGATCGGCCTGATCCTTCT-TGCGTGCAGTCGATCC
66 CGACCGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCCCGATCCTTCTATGCGTGCAGTCGATCC
10215971 TACTGCCGTAACCCTCGGTCTGGTCTGAT
131 TACTGCCGTAACCCTCGGTC-GGTCTGAT
10216000 CTTAGAC-TGGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
10216020 TGTATGCTTA
Statistics
Matches: 252, Mismatches: 73, Indels: 23
0.72 0.21 0.07
Matches are distributed among these distances:
156 6 0.02
157 8 0.03
158 142 0.56
159 96 0.38
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
CGACCGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCCCGATCCTTCTATGCGTGCAGTCGATCC
TACTGCCGTAACCCTCGGTCGGTCTGAT
Found at i:10216029 original size:26 final size:26
Alignment explanation
Indices: 10216000--10216052 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10215990 CTGGTCTGAT
10216000 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
10216026 CTTATACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
10216052 C
1 C
10216053 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:10216991 original size:340 final size:340
Alignment explanation
Indices: 10216367--10217300 Score: 978
Period size: 340 Copynumber: 2.7 Consensus size: 340
10216357 AACTTCATAT
* * * * * **
10216367 GCTTAGACATGG-ATGAACT-CCAAATGACTAAGCCAACCCACGAAACGAGCGTGCTGGTGCTCA
1 GCTTAGACATGGAATGAACTCCCTAA-GCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCA
* * ** * * * * * * * * *
10216430 GTCGGCCTAAAAGGCAAAATGCACAAGCCGAGGACCG-GCCCGGTCCCCTCTTGTGTGCTGTCGA
65 GCCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGAG-CCGGTCCCC-CCTGCGTGCTGCCAA
** * * * *
10216494 TCCTAATGCCGCAACCCTCGA--CGGTCAGATCTTAGACT-GGAATGAAGTTCGTATGCTTAGAT
128 TCCTGCTGCCGTAACCCTCGACCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAT
* * * * *
10216556 TGGGATGAACACCGTATTGCCTAAGTCAACCCACAAAACAAGCATACGGGGGCTGAGCCGACTGG
193 AGGGATGAACTCCGTA-TGCCTAAGTCAACCCACAAAACGAGCGT--GGGGGCTGAGCCGACTGA
* * * * * *
10216621 AGAGGCATCATGCGTAAGCTGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTC-GATCTCACTGC
255 AGAGGCATAATGCGTAAGCTGAGCATCGACCCGATCCCCCTCTGCGTGCTGCCAG-TCTCACTAC
* *
10216685 CACAACCCTCAGTCCGGCTGGG
319 CACAACCCTCAGTCCAGCTAGG
* * *
10216707 GCTTAGACATGGAATGAACTCCCTATTGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTA-AGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCA
* * * * * *
10216772 GTCGG-CTGG-GA-GCAGAATGGGTAAGTCGAGG-TCGCGCC-GTCCCCCCTGCTTGCTGCTAAT
65 GCCGGTC-GGAGAGGCAGAATGCGCAAGTCGAGGATCGAGCCGGTCCCCCCTGCGTGCTGCCAAT
* * * * * * *
10216832 CTTGCTGTCGTAACCCTCGGGCCCAGTCTGATCATAGACTGGGAATGAACTCCGTAAGCTTAGAC
129 CCTGCTGCCGTAACCCTC-GACCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGA-
** *
10216897 TAGAAATGAACTCCGTATGCCTAAGTGAACCCACAAAACGAGCGTGTGGGGCTGAGCCGAGC-GA
192 TAGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTG-GGGGCTGAGCCGA-CTGA
* *
10216961 AGAGGCATAATGCGTAAG-TCGAGCATCGACCCGATCCCCCTTTGCGTGCTGCCAGTCTCGCTAC
255 AGAGGCATAATGCGTAAGCT-GAGCATCGACCCGATCCCCCTCTGCGTGCTGCCAGTCTCACTAC
* *
10217025 TACAACCCTCGGTCCAGCTAGG
319 CACAACCCTCAGTCCAGCTAGG
* *
10217047 GCTTAGACATGGAATGAACTCCCTAAGCCTAAGCTAACCCACGAAATGGGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTAAGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAG
* * *
10217112 CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGATCCGGTCCCCCCTGCGTGCTGCCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGAGCCGGTCCCCCCTGCGTGCTGCCAATCC
*
10217177 TGCTGCCGTAACCCTCGACCCAGTCCGATCTTAGACTGAGAATGAACTTCGTATGCTTAGATTAG
131 TGCTGCCGTAACCCTCGACCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGA-TAG
* * *
10217242 GGATGAACTTCGCATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGAC
195 GGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTG-GGG-GCTGAGCCGAC
10217301 CAGAGAGGCA
Statistics
Matches: 491, Mismatches: 83, Indels: 38
0.80 0.14 0.06
Matches are distributed among these distances:
337 23 0.05
338 7 0.01
339 46 0.09
340 154 0.31
341 73 0.15
342 144 0.29
343 44 0.09
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (340 bp):
GCTTAGACATGGAATGAACTCCCTAAGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGAGCCGGTCCCCCCTGCGTGCTGCCAATCC
TGCTGCCGTAACCCTCGACCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATAGG
GATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGGGGGCTGAGCCGACTGAAGAGGC
ATAATGCGTAAGCTGAGCATCGACCCGATCCCCCTCTGCGTGCTGCCAGTCTCACTACCACAACC
CTCAGTCCAGCTAGG
Found at i:10217964 original size:26 final size:26
Alignment explanation
Indices: 10217926--10217981 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
10217916 GGCTCAAAAT
10217926 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10217952 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10217978 CTTA
1 CTTA
10217982 AGCCAACCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10218299 original size:156 final size:159
Alignment explanation
Indices: 10217961--10218332 Score: 408
Period size: 156 Copynumber: 2.4 Consensus size: 159
10217951 GCTTAGACAT
* * * * *
10217961 GGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGTCGAAG
1 GGAATAAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGTCGAAG
* * * * **
10218026 AGGCAAAATGCACAAGTCGGGGATGGGCTCGGTCCCCCCATTCGTACTGTTGATCCTGCTACCAT
66 AGGCAAAATGCACAAGTCGGGGATCGGCCCAGTCCCCCCATGCGTACTGCCGATCCTGCTACCAT
** * *
10218091 AACCCTCACTCCGGTCTGATCTTAGACTG
131 AACCCTCACTCCGGTCCAATCATAGACTA
* * *
10218120 GGAATCAACTCCGTATGCATAAGTCAACCCATGATACGAGCGTGCGGGCGCTGAGCCAGTCGAAG
1 GGAATAAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGTCGAAG
* ** * ** *
10218185 -GGCAGAATGCGTAAG-CGGGGATCGGCCCAGTCCCCCC-TGCGTGCTGCCGATCCTGCTGTCGT
66 AGGCAAAATGCACAAGTCGGGGATCGGCCCAGTCCCCCCATGCGTACTGCCGATCCTGCTACCAT
* ** *
10218247 GACCCTCGGTCTGGTCCAATCATAGACTA
131 AACCCTCACTCCGGTCCAATCATAGACTA
* ** * * *
10218276 GGAATAAACTCCGTATGCCTAAGTCAACCCGCGAAATGAGCATGCAGGCGCTCAGCC
1 GGAATAAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
10218333 GACCATAGAG
Statistics
Matches: 176, Mismatches: 37, Indels: 3
0.81 0.17 0.01
Matches are distributed among these distances:
156 87 0.49
157 19 0.11
158 12 0.07
159 58 0.33
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
GGAATAAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGTCGAAG
AGGCAAAATGCACAAGTCGGGGATCGGCCCAGTCCCCCCATGCGTACTGCCGATCCTGCTACCAT
AACCCTCACTCCGGTCCAATCATAGACTA
Found at i:10219897 original size:26 final size:26
Alignment explanation
Indices: 10219845--10219897 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
10219835 CCGATTTGAT
*
10219845 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGAATG
10219871 CTTAGACAT-GGAATGAAC-TCTGAATG
1 CTTAGAC-TGGGAATGAACTTC-GAATG
10219897 C
1 C
10219898 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.08
26 21 0.88
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGAATG
Found at i:10220065 original size:26 final size:26
Alignment explanation
Indices: 10220029--10220081 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10220019 CTCGGCCGAT
* * *
10220029 CTTAGATTGGGAATGAAGTCCGTAAG
1 CTTAGACTGGGAATGAACTCCATAAG
*
10220055 CTTAGACTGGGGATGAACTCCATAAG
1 CTTAGACTGGGAATGAACTCCATAAG
10220081 C
1 C
10220082 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATAAG
Found at i:10220409 original size:26 final size:26
Alignment explanation
Indices: 10220371--10220449 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
10220361 CCGATCTGAT
*
10220371 CTTAGACTAGGAATG-ACATCCGTATG
1 CTTAGACTGGGAATGAAC-TCCGTATG
10220397 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10220423 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10220449 C
1 C
10220450 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 48 0.96
27 2 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10226357 original size:26 final size:26
Alignment explanation
Indices: 10226321--10226373 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10226311 CCGATCCGAT
*
10226321 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10226347 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10226373 C
1 C
10226374 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10227771 original size:26 final size:26
Alignment explanation
Indices: 10227733--10227785 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10227723 GGCTCAAAAT
*
10227733 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10227759 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10227785 C
1 C
10227786 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10228257 original size:26 final size:26
Alignment explanation
Indices: 10228221--10228273 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10228211 CAAGTCTGAT
10228221 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10228247 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10228273 C
1 C
10228274 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10228979 original size:26 final size:26
Alignment explanation
Indices: 10228941--10228993 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10228931 GGCTCAAAAT
10228941 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10228967 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10228993 C
1 C
10228994 CTATGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10229201 original size:158 final size:157
Alignment explanation
Indices: 10228967--10229468 Score: 454
Period size: 158 Copynumber: 3.2 Consensus size: 157
10228957 ACTCCGTATG
** * * *
10228967 CTTAGAC-ATGGAATGAACTCCGTATGCCTATGCCAACCCACGAAACGAGCGTGCAGGTGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCAAAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
* *** * * *
10229031 -CTGGTTAGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCCTATGTGCTGTCGATC
65 CCAGCCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTATGTGCTGTCGATC
* * * * *
10229095 TTGGTGCTGCAACCCTCAGTCCAGTCCGAT
129 CTGCTGCCGCAACCCTCGGTCC-GTCAGAT
* * * *
10229125 CTTAGACTAGGAATGAACTCCGTATGCAAAAGTCAACCCATGAAACGAGCGTGTGGGAGCTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCAAAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAGC
* * * * ** *
10229190 CAGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCTTGGT-CCCCCTCTGCATGCTACCGGTC
66 CAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTATG--TGCTGTCGATC
* * * **
10229254 CCGCTGCCACAACCCTCGGTCCGGCTAGGG
129 CTGCTGCCGCAACCCTCGGTCCGTC-AGAT
* ** * * * *
10229284 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAGCGGGCGTGCGGGCGTTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCAAAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
* * * **
10229348 CCGGCCGTAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCC
65 CCAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTATGTGCTGTCGATCC
* * *
10229413 TACTGCCGCAACCCTCGGTCTGGTCTGAT
130 TGCTGCCGCAACCCTCGGTC-CGTCAGAT
* *
10229442 CTTAGACTGGGAATGAACTTCGTATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
10229469 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 66, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
157 8 0.03
158 135 0.50
159 119 0.44
160 7 0.03
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.20
Consensus pattern (157 bp):
CTTAGACTAGGAATGAACTCCGTATGCAAAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAGC
CAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTATGTGCTGTCGATCCT
GCTGCCGCAACCCTCGGTCCGTCAGAT
Found at i:10229336 original size:159 final size:158
Alignment explanation
Indices: 10229125--10229460 Score: 379
Period size: 159 Copynumber: 2.1 Consensus size: 158
10229115 CCAGTCCGAT
* * * * *
10229125 CTTAGACTAGGAATGAACTCCGTATGCAAAAGTCAACCCATGAAACGAGCGTGTGGGAGCTGAGC
1 CTTAGACTAGGAATGAACTCCCTATGCAAAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAGC
* * * *
10229190 CAGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCTTGGTCCCCCTCTGCATGCTACCGGTCC
66 CAGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGATCCCCC-CTGCATGCTACCGATCC
*
10229255 CGCTGCCACAACCCTCGGTCCGGCTAGGG
130 CACTGCCACAACCCTCGGTCCGGCTAGGG
** * * * *
10229284 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAGCGGGCGTGCGGGCGTTCAG
1 CTTAGACTA-GGAATGAACTCCCTATGCAAAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
* * * * **
10229348 CCGGCCGTAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCC
65 CCAGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGATCCCCCCTGCATGCTACCGATCC
* * * **
10229413 TACTGCCGCAACCCTCGGTCTGGTCT-GAT
130 CACTGCCACAACCCTCGGTCCGG-CTAGGG
*
10229442 CTTAGACTGGGAATGAACT
1 CTTAGACTAGGAATGAACT
10229461 TCGTATGCTT
Statistics
Matches: 146, Mismatches: 28, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
158 51 0.35
159 95 0.65
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCCTATGCAAAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAGC
CAGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGATCCCCCCTGCATGCTACCGATCCC
ACTGCCACAACCCTCGGTCCGGCTAGGG
Found at i:10229478 original size:26 final size:26
Alignment explanation
Indices: 10229442--10229494 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10229432 CTGGTCTGAT
*
10229442 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10229468 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10229494 C
1 C
10229495 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10230346 original size:26 final size:26
Alignment explanation
Indices: 10230310--10230360 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
10230300 GGTCCGATCC
10230310 TAGATTGGGAATGAACTCCATATGCT
1 TAGATTGGGAATGAACTCCATATGCT
*
10230336 TAGATTGGGAATGAACTCCGTATGC
1 TAGATTGGGAATGAACTCCATATGC
10230361 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TAGATTGGGAATGAACTCCATATGCT
Found at i:10231070 original size:26 final size:26
Alignment explanation
Indices: 10231019--10231071 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10231009 TGGCTTAAAT
*
10231019 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10231045 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
10231071 C
1 C
10231072 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10231420 original size:159 final size:158
Alignment explanation
Indices: 10231044--10231546 Score: 427
Period size: 159 Copynumber: 3.2 Consensus size: 158
10231034 AACTCTATAT
* *
10231044 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAAGAGTGC-GGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAGGTGTGCGGGCGCTCAG
* * ** ** *
10231108 CC-AGCTGGAGAGGTAGAATGCACAAGCCAGGGATCGGCCCAGTCCCCCCTACGTGCTATCGATC
66 CCGA-CTGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCTGGTCCCCCCTACGTGCTACCGATC
* * *
10231172 CTGCTTTCGAAACCCTCGGTCTGGTCTGA
130 CCGCTTACGAAACCCTCAGTCTGGTCTGA
* ** * * * *
10231201 TCTTAGAC-TGGGAATGAACTTTGTATGCATAAGTCAAACCACGAAACGAGCGTGT--GGGCGCT
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-TAG-GTGTGCGGGCGCT
* * * * **
10231263 GAGCCGACTGAAGAGGCATAATGCGCAAGCTGGGGATCGACCTGGTCCCCCTCTGTGTGC-AGCC
63 CAGCCGACTGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCTGGTCCCCC-CTACGTGCTA-CC
* * * *
10231327 GGTCCCGC-TACTACAACTCTCAGTCTGG-CTTGG
126 GATCCCGCTTACGA-AACCCTCAGTCTGGTC-TGA
* *
10231360 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACCAAATAGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAGGTGTGCGGGCGCTCAG
* * * *
10231425 TCGA-TCGGAGAGGCAGAATACGCAAG-TCGGGGATCGGCCTGGTCCCCCCTGCATGCTTACCGA
66 CCGACT-GGAGAGGCAGAATGCGCAAGCT-GGGGATCGGCCTGGTCCCCCCTACGTGC-TACCGA
** * * * *
10231488 TCCCGCTGCCGCAACCCTCGGTCCGAT-TCGA
128 TCCCGCTTACGAAACCCTCAGTCTGGTCT-GA
*
10231519 TCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
10231547 TTAGACTAGG
Statistics
Matches: 268, Mismatches: 58, Indels: 38
0.74 0.16 0.10
Matches are distributed among these distances:
156 1 0.00
157 42 0.16
158 63 0.24
159 159 0.59
160 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAGGTGTGCGGGCGCTCAG
CCGACTGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCTGGTCCCCCCTACGTGCTACCGATCC
CGCTTACGAAACCCTCAGTCTGGTCTGA
Found at i:10231571 original size:26 final size:26
Alignment explanation
Indices: 10231520--10231572 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10231510 CCGATTCGAT
*
10231520 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
** *
10231546 CTTAGACTAGGGCTGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
10231572 C
1 C
10231573 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:10231888 original size:184 final size:180
Alignment explanation
Indices: 10231360--10231914 Score: 519
Period size: 184 Copynumber: 3.0 Consensus size: 180
10231350 TCTGGCTTGG
* * *
10231360 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACCAAATA-G-GTGTGCGGGCGCTC
1 GCTTAGACATGGAATGAACTACATATGCCTAAGCCAACCCA-CAAA-ACGAGCGTGCGGGCGCTC
* * * * * * * * *
10231423 AGTCGATCGGAGAGGCAGAATACGCAAGTCGGGGATCGGCCTGGTCCCCCCTGCATGCTTACCGA
64 AGCCG-GCCGAGAGGCAGAATGCGTAAGCCGGGGATC-GCCCGGTCCCCCCTACGTGCTT--CGA
* * *
10231488 TCCCGCTGCCGCAACCCTCGGTCCGATTC-GATCTTAGACTAGGAATGAACTCCGTAT
125 TCCTGCT-CCTCAACCCTCGGTCC-AGTCTGATCTTAGACTAGGAATGAACTCCGTAT
** * * * *
10231545 GCTTAGAC-TAGGGCTGAACTTCATATGCCTAAGTCAACCCACAAAACGAGCATGCAGGCGCTCA
1 GCTTAGACAT-GGAATGAACTACATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* * * *
10231609 GCTGGCCGATGAGGCAGAATGCGTAAGCCGGGGATCGACCC-ATCCTCCCTTACGTGCTACCGAT
65 GCCGGCCGA-GAGGCAGAATGCGTAAGCCGGGGATCG-CCCGGTCC-CCCCTACGTGCT-TCGAT
* ** * * *
10231673 CCTGCTGCTGTGACCCTCGATCC-GATCTGATCTTAGACTAGAAATGAACTCCATAT
126 CCTGCTCCT-CAACCCTCGGTCCAG-TCTGATCTTAGACTAGGAATGAACTCCGTAT
* * * *
10231729 GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTACATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * *
10231794 CCGGCCAGAGAGGCAGAACGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTATGTGCTGTCGATTC
66 CCGGCC-GAGAGGCAGAATGCGTAAGCCGGGGATC-GCCCGGTCCCCCCTACGTGCT-TCGATCC
* * * *
10231859 TACTATCTCAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
128 TGCT-CCTCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTAT
10231913 GC
1 GC
10231915 CTAAGTCAAC
Statistics
Matches: 297, Mismatches: 57, Indels: 33
0.77 0.15 0.09
Matches are distributed among these distances:
183 4 0.01
184 201 0.68
185 92 0.31
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.21
Consensus pattern (180 bp):
GCTTAGACATGGAATGAACTACATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
CCGGCCGAGAGGCAGAATGCGTAAGCCGGGGATCGCCCGGTCCCCCCTACGTGCTTCGATCCTGC
TCCTCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:10232131 original size:159 final size:157
Alignment explanation
Indices: 10231729--10232232 Score: 446
Period size: 159 Copynumber: 3.2 Consensus size: 157
10231719 AACTCCATAT
* * * *
10231729 GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAG
* * * * * * **
10231794 CCGGCCAGAGAGGCAGAACGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTATGTGCTGTCGATTC
65 CCGGTCGGAGAGGCAGAATGCGTAAGCTGGGGATCAGTCCGGTCCCCTCTGCGTGCTGTCGATTC
* * * *
10231859 TACTATCTCAACCCTTGGTCCAGTCTGA
130 TACTACCACAACCCTCGGTCCAGTCAGA
* * * *
10231887 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGA-GGGTGCTG
1 GCTTAGACAT-GGAATGAACTCC-TATGCCTAAGCCAACCCATGAAATGAGCGT-ACGGGCGCTC
* * * * *
10231950 AGTCGGTCGAAGAGACATAATGCGTAAGCTGGGGATCAGTCGGGTCCCTCTCTGCGTGCTGTC--
63 AGCCGGTCGGAGAGGCAGAATGCGTAAGCTGGGGATCAGTCCGGTCCC-CTCTGCGTGCTGTCGA
* * *** *
10232013 TGTCTCGCTGCCACAACCCTCGGTTTGGAT-AGG
127 T-TCT-ACTACCACAACCCTCGGTCCAG-TCAGA
* *
10232046 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCATGAAATGGGCATACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTC-CTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAG
* * * *
10232111 CCGATCGGAGAGGCAGAATGCGCAAGCTGGGAATCGACTCCGGTCCCC-CTTGCGTGCTGTCGAT
65 CCGGTCGGAGAGGCAGAATGCGTAAGCTGGGGATC-AGTCCGGTCCCCTC-TGCGTGCTGTCGAT
* ** * * *
10232175 CCTACTGTCGCAACCCTCGATCCAGTCTGA
128 TCTACTACCACAACCCTCGGTCCAGTCAGA
*
10232205 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCC-TATGC
10232233 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 57, Indels: 33
0.75 0.16 0.09
Matches are distributed among these distances:
157 3 0.01
158 95 0.35
159 159 0.58
160 14 0.05
161 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCGTAAGCTGGGGATCAGTCCGGTCCCCTCTGCGTGCTGTCGATTCT
ACTACCACAACCCTCGGTCCAGTCAGA
Found at i:10232242 original size:26 final size:26
Alignment explanation
Indices: 10232206--10232258 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10232196 CCAGTCTGAT
10232206 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
10232232 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10232258 C
1 C
10232259 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10233309 original size:157 final size:158
Alignment explanation
Indices: 10232952--10233452 Score: 405
Period size: 158 Copynumber: 3.2 Consensus size: 158
10232942 AACTCTGTAT
* * * * *
10232952 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACAAGCGTGTGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTGAG
* * * ** *
10233017 CCGATCGAAGAGGCAAAGTGCACAAGCGGAGGATCGGCCCGATCCCCCCTGTGTGCTGTCGATCT
66 CCGATCGAAGAGGCAAAGTGCACAACCAGAGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCC
* * *
10233082 TGCTGCTACAACCTTGGTTTTTGTCTGA
131 TGCTGCCACAACCTTAGTTTTAGTCTGA
* ** * * * * *
10233110 TCTTAGACGGGGAATGAACTCTATAT-CCATAAGTCAATCCACGAAACGATCATGCGGGCGCTGA
1 GCTTAGACATGGAATGAACTCCATATGCC-TAAGCCAACCCACGAAACAAGCATGCGGGCGCTGA
* * * * * *
10233174 GCCGA-CTGAAGAGGCATAA-TGCGCAACCAG-GGATTGGCCTGGTCCCCCTTGCGTGCTACCGG
65 GCCGATC-GAAGAGGCA-AAGTGCACAACCAGAGGATCGGCCCGATCCCCCCTGCGTGCTACCGA
*
10233236 TCCTGCTGCCACAACCCTTAG-TTTAG-CTGGG
128 TCCTGCTGCCACAA-CCTTAGTTTTAGTCT-GA
* * * * * * * *
10233267 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAGATAGGCATGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTGAG
* * *
10233332 CCGATCGAAGAGGCAGAA-TGCGCAAGCC-GAGGATCGACCCTG-TCCCCCCTACGTGCTACCGA
66 CCGATCGAAGAGGCA-AAGTGCACAA-CCAGAGGATCGGCCC-GATCCCCCCTGCGTGCTACCGA
* * * * *
10233394 TCCTGCAGTCGCAACCCTT-GATCT-GATCTGA
128 TCCTGCTGCCACAA-CCTTAGTTTTAG-TCTGA
*
10233425 TCTTAGAC-TGAGAATGAACTCCATATGC
1 GCTTAGACATG-GAATGAACTCCATATGC
10233453 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 60, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
156 2 0.01
157 117 0.43
158 145 0.54
159 5 0.02
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTGAG
CCGATCGAAGAGGCAAAGTGCACAACCAGAGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCC
TGCTGCCACAACCTTAGTTTTAGTCTGA
Found at i:10233467 original size:26 final size:26
Alignment explanation
Indices: 10233426--10233478 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10233416 CTGATCTGAT
10233426 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
10233452 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
10233478 C
1 C
10233479 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:10233825 original size:26 final size:27
Alignment explanation
Indices: 10233796--10233850 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 27
10233786 ATCCGATCTT
10233796 AGACATGGAATGAACTCCGTATG-CTA
1 AGACATGGAATGAACTCCGTATGCCTA
*
10233822 AGACATGGAATTAACTCCGTATGCCTA
1 AGACATGGAATGAACTCCGTATGCCTA
10233849 AG
1 AG
10233851 CTAACCCACG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
AGACATGGAATGAACTCCGTATGCCTA
Found at i:10234312 original size:26 final size:26
Alignment explanation
Indices: 10234283--10234335 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10234273 CCGGTCTGAT
10234283 CTTAGACTAGGAATGAACTCGGTATG
1 CTTAGACTAGGAATGAACTCGGTATG
* * * *
10234309 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCGGTATG
10234335 C
1 C
10234336 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCGGTATG
Found at i:10235657 original size:12 final size:12
Alignment explanation
Indices: 10235640--10235664 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10235630 CTCTTCGTGT
10235640 TGCCGATCCTGC
1 TGCCGATCCTGC
10235652 TGCCGATCCTGC
1 TGCCGATCCTGC
10235664 T
1 T
10235665 ACCACAACCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.40, G:0.24, T:0.28
Consensus pattern (12 bp):
TGCCGATCCTGC
Found at i:10235877 original size:26 final size:26
Alignment explanation
Indices: 10235848--10235900 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10235838 CCAATCTGAT
* *
10235848 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
10235874 CTTACACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
10235900 C
1 C
10235901 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:10235984 original size:355 final size:354
Alignment explanation
Indices: 10235312--10236179 Score: 916
Period size: 355 Copynumber: 2.4 Consensus size: 354
10235302 AGTCTCGCTG
* * ** * *
10235312 CCACAACCGTCAGTCCGGGTGGGGCTTAGACATGGAATGAAATCCCTACGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * * * ** *
10235377 GAAACGGGCGTGCAAGTGCTCAGTCGGTTGGAGAGACAGAATGCGTAAGCTGGGGTCAGCCCGGT
66 GAAACGAGCGTGCAAGTGCTCAGTCGGTCGAAGAGACAGAATACGCAAGCAAGGATCAGCCCGGT
* * **
10235442 CCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCTTTGGTCCGGTCTGATCTTAGACTGGGAAT
131 CCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGATCCAATCTGATCTTAGACTGGGAAT
** *
10235507 GAACTCCGTATGCTTTGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATG
196 GAACTCCGTATGCTTACACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCATG
* ** * ** * ** * *
10235572 CGGGCATTCAGCCGGCCGGTGAGGCATAATGCGCAAGTTGAGGATCAGCTTGATCCCCCTCTTCG
261 CGGGCATTCAGCCGACCGAAGAGGCATAATGCACAAGCCGAGGATCAACCCGATCCCCCTCTGCA
* * *
10235637 TGTTGCCGATCCTGCTGC-CGATCCTGCTA
326 TGCTACCGATCCCGCT-CTCGATCCTGCTA
* * ** *
10235666 CCACAACCCTTGGTTCGGTTGGGGCTTAGACATGGAACGAACTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
** * ** * * *
10235731 GAAACGAGCGTGCCGGCT-CTCAGTTGGTCGAAGAGGTAGAATACGCAAGCCAAGTATCGGTCCG
66 GAAACGAGCGTGCAAG-TGCTCAGTCGGTCGAAGAGACAGAATACGCAAG-CAAGGATCAGCCCG
* * *
10235795 GTCCCCCCTGTGTGCTG-CTGATCCTGTTGCCGTAACCCTTGATCCAATCTGATCTTAGACTGGG
129 GTCCCCCCTGCGTGCTGTC-GATCCTGCTGCCGCAACCCTTGATCCAATCTGATCTTAGACTGGG
* * **
10235859 AATGAACTCTGTATGCTTACACTGGGGATGAACTCCGTATGCCTAAGTCAACCTATTAAACAAGC
193 AATGAACTCCGTATGCTTACACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGC
* * * * * * *
10235924 GTGTGGGCACTT-AGCTGATCGAAGAGGCATACTGCACAAGCCGGGGATCAACCCGATCCCCTTC
258 ATGCGGGCA-TTCAGCCGACCGAAGAGGCATAATGCACAAGCCGAGGATCAACCCGATCCCCCTC
* * *
10235988 TGCATGCTATCGATCCCGCTCTCGGTCCTGCTG
322 TGCATGCTACCGATCCCGCTCTCGATCCTGCTA
*
10236021 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * ** * * * ** * * * *
10236086 GAAACGAGCATGCAGGTGCTCAACCGGCCAAAGAGGCAGAATGTGAAAGCCGAGGATCGGCCCGA
66 GAAACGAGCGTGCAAGTGCTCAGTCGGTCGAAGAGACAGAATACGCAAG-CAAGGATCAGCCCGG
* *
10236151 TCCCCCCATGCGTGCTGTTGATCTTGCTG
130 TCCCCCC-TGCGTGCTGTCGATCCTGCTG
10236180 TTGGTCCTGC
Statistics
Matches: 419, Mismatches: 87, Indels: 14
0.81 0.17 0.03
Matches are distributed among these distances:
354 97 0.23
355 304 0.73
356 18 0.04
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (354 bp):
CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
GAAACGAGCGTGCAAGTGCTCAGTCGGTCGAAGAGACAGAATACGCAAGCAAGGATCAGCCCGGT
CCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGATCCAATCTGATCTTAGACTGGGAAT
GAACTCCGTATGCTTACACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCATG
CGGGCATTCAGCCGACCGAAGAGGCATAATGCACAAGCCGAGGATCAACCCGATCCCCCTCTGCA
TGCTACCGATCCCGCTCTCGATCCTGCTA
Found at i:10237376 original size:26 final size:26
Alignment explanation
Indices: 10237324--10237376 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10237314 CCGGTCCGAT
*
10237324 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGAATG
* * *
10237350 CTTAGACTGGGGATGAACTCTGAATG
1 CTTAGACAGGGAATGAACTCCGAATG
10237376 C
1 C
10237377 CTAATTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGAATG
Found at i:10237718 original size:25 final size:26
Alignment explanation
Indices: 10237690--10237741 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
10237680 CCGGTCTGAT
10237690 CTTAGACAGGGAAT-AACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
10237715 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
10237741 C
1 C
10237742 CTAAGGCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:10238241 original size:26 final size:26
Alignment explanation
Indices: 10238190--10238242 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10238180 CTAGTTTGAT
*
10238190 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
10238216 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10238242 C
1 C
10238243 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10238937 original size:26 final size:26
Alignment explanation
Indices: 10238899--10238951 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10238889 GGCTCAAAAT
10238899 CTTAGAATGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
10238925 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGA-ATGGGAATGAACTCCATATG
10238951 C
1 C
10238952 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:10239631 original size:311 final size:313
Alignment explanation
Indices: 10238924--10239643 Score: 770
Period size: 311 Copynumber: 2.3 Consensus size: 313
10238914 AACTCCATAT
* *
10238924 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* ** * * * * * * *
10238989 CCCACCAGAGAGGCAAAATGTGCAAGTCGGGGATCAGCCCGATCCCCTTCTATGTGCTGTCAATT
66 TCGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGATCCCCTCCAATGTGCTGTCAATC
* * * *** * *
10239054 CTGCTGCCGCAACCCTCGGTTTGATCTTATCTTAGACTGGGAATGAACTTTGTATGTATAAGTTA
131 CTGCTGCCGCAACCCTCAGTCTGATCTGATCTTA-A----GAATGAACTCCATATGCATAAGTCA
* * * * * *
10239119 ACCGACAAAACGAGCGTACGGGCATCGAGTCGGTTGGAGAGCCATAATGCGCAAGCCAAGGATCG
191 ACCCACAAAACGAGCGTACGGGCATCGAGCCGATCGAAGAGCCATAATGCGCAAGCCAAGGATCA
* ** * * ** *
10239184 GCCCGGTCCCCCTCAATGTGCTGCCGGTCCCACTGGCACAACCCTCGGTCTGGCTGGG
256 GCCCGATCAACCTCAATGTGCTACCGATCCCACTACCACAACCCTCGGTCCGGCTGGG
* * * * *
10239242 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACGAGCATGTGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* *
10239307 TCGG-TAGGAGAGGCAGAATACGTAAGCCGGGGATC-GACCC-AGTCCCCTCCAATGTGCTGTCA
66 TCGGCCA-GAGAGGCAGAATGCGTAAGCCGGGGATCAG-CCCGA-TCCCCTCCAATGTGCTGTCA
* *
10239369 ATCCTGTTGTCGCAACCCTCAGTCTGATCTGATCTT-A-AATGAACTCCATATGCATAAGTCAAC
128 ATCCTGCTGCCGCAACCCTCAGTCTGATCTGATCTTAAGAATGAACTCCATATGCATAAGTCAAC
* * * *
10239432 CCACAAAATGAGCGTACGGG--TGCTGAGCCGATCGAAGAGGCATAATGCGCAAGTCGAGGATCA
193 CCACAAAACGAGCGTACGGGCAT-C-GAGCCGATCGAAGAGCCATAATGCGCAAGCCAAGGATCA
** * * * * *
10239495 GCCCGATCAACCTCTGTGTGCTACCGATCTCGCTACCACAACCTTCTGTCCGGTTGGG
256 GCCCGATCAACCTCAATGTGCTACCGATCCCACTACCACAACCCTCGGTCCGGCTGGG
* * * * *
10239553 GCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
10239618 TCGGCCAGAGAGGCAGAATGCGTAAG
66 TCGGCCAGAGAGGCAGAATGCGTAAG
10239644 TCAAAGATCA
Statistics
Matches: 330, Mismatches: 66, Indels: 19
0.80 0.16 0.05
Matches are distributed among these distances:
309 1 0.00
310 1 0.00
311 190 0.58
312 1 0.00
316 1 0.00
317 3 0.01
318 133 0.40
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.21
Consensus pattern (313 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
TCGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGATCCCCTCCAATGTGCTGTCAATC
CTGCTGCCGCAACCCTCAGTCTGATCTGATCTTAAGAATGAACTCCATATGCATAAGTCAACCCA
CAAAACGAGCGTACGGGCATCGAGCCGATCGAAGAGCCATAATGCGCAAGCCAAGGATCAGCCCG
ATCAACCTCAATGTGCTACCGATCCCACTACCACAACCCTCGGTCCGGCTGGG
Found at i:10239956 original size:173 final size:171
Alignment explanation
Indices: 10239750--10240142 Score: 441
Period size: 171 Copynumber: 2.3 Consensus size: 171
10239740 TAGACTAGCG
* * * * * *
10239750 ATGAACTTCGAATGCCTAAGTCAACCCATAAAACGAGCGAGTGGGCTAG-AGAGGCCAGCCGGTG
1 ATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGTGGG-T-GCACA-GCCAGCCGGAG
* ** * *
10239814 AGGTATAAAG-TGCAAGCCGGGGATCAGCCCGATC-CCCTTCTACGTGCTACCGATCCCGCTGCT
63 AGGCATAAAGCT-CAAGCAAGGGATCAGCCCGATCTCCC-TCTACATGCTACCGATCCCGCTGCC
* * * * *
10239877 GGTCTTATTACCATAACCCTCGGTCTGGCTGGGGCTTAGACATGGA
126 AGTCTTACTACCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGA
* * * * * *
10239923 ATGAACTCCGTATGCCTAAGCCAACACATAAAACGAGCGTGCGGGTGCTCAGTCGGTCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGTGGGTGCACAGCCAGCCGGAGAGG
* * * *
10239988 CATAATGCTCAAGCAAGGGATCAGCTCGATCTCCCTCTGCATGCTGCCGATCCCGCTGCCAGTCT
66 CATAAAGCTCAAGCAAGGGATCAGCCCGATCTCCCTCTACATGCTACCGATCCCGCTGCCAGTCT
* * *
10240053 TGCTGCCACAACCCTCAGTCCGGTTGGGGCTTAGACATGGA
131 TACTACCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGA
*
10240094 ATGAACTCCGTATGCCTAAAGCCAACCCACAAAACGAGCGTGTGGGTGC
1 ATGAACTCCGTATGCCT-AAGCCAACCCATAAAACGAGCGTGTGGGTGC
10240143 TCAATCGATC
Statistics
Matches: 184, Mismatches: 32, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
171 111 0.60
172 34 0.18
173 39 0.21
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (171 bp):
ATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGTGGGTGCACAGCCAGCCGGAGAGG
CATAAAGCTCAAGCAAGGGATCAGCCCGATCTCCCTCTACATGCTACCGATCCCGCTGCCAGTCT
TACTACCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGA
Found at i:10240084 original size:171 final size:173
Alignment explanation
Indices: 10239833--10240192 Score: 485
Period size: 171 Copynumber: 2.1 Consensus size: 173
10239823 GTGCAAGCCG
* ** * *
10239833 GGGATCAGCCCGATCCCCTTCTACGTGCTACCGATCCCGCTGCTGGTCTTATTACCATAACCCTC
1 GGGATCAGCCCGATCCCCTTCTACATGCTACCGATCCCGCTGCCAGTCTTACTACCACAACCCTC
* * *
10239898 GGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCT-AAGCCAACACATAAAACGAGCG
66 AGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAAGCCAACACACAAAACGAGCG
* * * *
10239962 TGCGGGTGCTCAGTCGGTCGGAGAGGCATAATGCTCAAG-CAA
131 TGCGGGTGCTCAATCGATCGGAGAGGCAGAATGCACAAGCCAA
* * * * *
10240004 GGGATCAGCTCGATCTCCC-TCTGCATGCTGCCGATCCCGCTGCCAGTCTTGCTGCCACAACCCT
1 GGGATCAGCCCGATC-CCCTTCTACATGCTACCGATCCCGCTGCCAGTCTTACTACCACAACCCT
* *
10240068 CAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAAGCCAACCCACAAAACGAGC
65 CAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAAGCCAACACACAAAACGAGC
*
10240133 GTGTGGGTGCTCAATCGATCGGAGAGGCAGAATGCACAAGCCAA
130 GTGCGGGTGCTCAATCGATCGGAGAGGCAGAATGCACAAGCCAA
* *
10240177 -GGATCGGCCCGGTCCC
1 GGGATCAGCCCGATCCC
10240193 TCCTGTGTAC
Statistics
Matches: 163, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
171 92 0.56
172 68 0.42
173 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (173 bp):
GGGATCAGCCCGATCCCCTTCTACATGCTACCGATCCCGCTGCCAGTCTTACTACCACAACCCTC
AGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAAGCCAACACACAAAACGAGCG
TGCGGGTGCTCAATCGATCGGAGAGGCAGAATGCACAAGCCAA
Found at i:10240238 original size:171 final size:171
Alignment explanation
Indices: 10239833--10240283 Score: 464
Period size: 171 Copynumber: 2.6 Consensus size: 171
10239823 GTGCAAGCCG
* * * ** * ** * *
10239833 GGGATCAGCCCGATC-CCCTTCTACGTGCTACCGATCCCGCTGCTGGTCTTATTACCATAACCCT
1 GGGATCAGCCCGATCTCCC-TCTGCATACTACCGATCCCGCTGCCAGTCCTGCTGCCACAACCCT
* * * *
10239897 CGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACATAAAACGAGCG
65 CAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACAAAACGAGCG
* * * *
10239962 TGCGGGTGCTCAGTCGGTCGGAGAGGCATAATGCTCAAGCAA
130 TGCGGGTGCTCAATCGATCGGAGAGGCAGAATGCACAAGCAA
* * * *
10240004 GGGATCAGCTCGATCTCCCTCTGCATGCTGCCGATCCCGCTGCCAGTCTTGCTGCCACAACCCTC
1 GGGATCAGCCCGATCTCCCTCTGCATACTACCGATCCCGCTGCCAGTCCTGCTGCCACAACCCTC
*
10240069 AGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAAGCCAACCCACAAAACGAGCG
66 AGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCT-AAGCCAACACACAAAACGAGCG
*
10240134 TGTGGGTGCTCAATCGATCGGAGAGGCAGAATGCACAAGCCAA
130 TGCGGGTGCTCAATCGATCGGAGAGGCAGAATGCACAAG-CAA
* * ** * * ** * *
10240177 -GGATCGGCCCG--GTCCCTCCTGTGTACTATCGATCCTGCTGCTGGTCCTGCTGTCGCAACCCT
1 GGGATCAGCCCGATCTCCCT-CTGCATACTACCGATCCCGCTGCCAGTCCTGCTGCCACAACCCT
* * * **
10240239 TAGTTCAGTCT-GATCTTAGACATGGAATGAACTCCGTATG-CTAAG
65 CAGTCCGGT-TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
10240284 ACATGGAATT
Statistics
Matches: 236, Mismatches: 39, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
169 3 0.01
170 7 0.03
171 156 0.66
172 67 0.28
173 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.22
Consensus pattern (171 bp):
GGGATCAGCCCGATCTCCCTCTGCATACTACCGATCCCGCTGCCAGTCCTGCTGCCACAACCCTC
AGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACAAAACGAGCGT
GCGGGTGCTCAATCGATCGGAGAGGCAGAATGCACAAGCAA
Found at i:10240292 original size:26 final size:27
Alignment explanation
Indices: 10240256--10240310 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
10240246 GTCTGATCTT
10240256 AGACATGGAATGAACTCCGTATG-CTA
1 AGACATGGAATGAACTCCGTATGCCTA
* *
10240282 AGACATGGAATTAACTCTGTATGCCTA
1 AGACATGGAATGAACTCCGTATGCCTA
10240309 AG
1 AG
10240311 CTAACCCACG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (27 bp):
AGACATGGAATGAACTCCGTATGCCTA
Found at i:10241075 original size:159 final size:159
Alignment explanation
Indices: 10240818--10241186 Score: 361
Period size: 159 Copynumber: 2.3 Consensus size: 159
10240808 TAGACATGGA
* * * **
10240818 ATGAACTCCTTATGCCTAAGCCAACCCATGAAACGAGCGTACGGTTGCTCAACCTGCTGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAACCTAATGGAGAGG
* * * * * * * **
10240883 TAGAATGCGCAAGCCGGGGATTGGCTTGGTCCCCC-CGTACGTGCTATCGATCTTGCTGCCGTAA
66 CAGAATGCACAAGCCGGGGATCGACTCGGTCCCCCTC-TACGTGCTATCAATCTCGCTGCCACAA
10240947 CCCTCGGTCTGGTCTGATCTTAGACTAGGG
130 CCCTCGGTCTGGTCTGATCTTAGACTAGGG
* * * * *
10240977 ATGAACTCCGTATGCCTGAGTCAACCCACGAAACGAGTGTGCGGGTGCTGAA-CTAATCGGAGAG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAACCTAAT-GGAGAG
* * * * *
10241041 GCATAATGCACAAGCTGGGGATCGACTCGTTCCCCCTCTGCGTGCTGTCAATCTCGCTGCCACAA
65 GCAGAATGCACAAGCCGGGGATCGACTCGGTCCCCCTCTACGTGCTATCAATCTCGCTGCCACAA
* * ** *
10241106 CCCTCGGTCCGAT-TGGGGCTTAGAC-ACGGA
130 CCCTCGGTCTGGTCT-GATCTTAGACTA-GGG
** * *
10241136 ATGAACTCCCAATGCTTAAGCCAACCCACGAAAC-AGGCGTGCGGGTGCTCA
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTACGGGTGCTCA
10241187 GTCGACCAGA
Statistics
Matches: 169, Mismatches: 36, Indels: 10
0.79 0.17 0.05
Matches are distributed among these distances:
158 6 0.04
159 162 0.96
160 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (159 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAACCTAATGGAGAGG
CAGAATGCACAAGCCGGGGATCGACTCGGTCCCCCTCTACGTGCTATCAATCTCGCTGCCACAAC
CCTCGGTCTGGTCTGATCTTAGACTAGGG
Found at i:10241077 original size:527 final size:525
Alignment explanation
Indices: 10239887--10241098 Score: 1323
Period size: 527 Copynumber: 2.3 Consensus size: 525
10239877 GGTCTTATTA
** * * *
10239887 CCATAACCCTCGGTCTGG-CTGGGGCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACAC
1 CCATAACCCTCGGTCTGGTCT-GATCTTAGACTA-GGGATGAACTCCGTATGCCTAAGTCAACCC
** * * * * *
10239950 ATAAAACGAGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCATAATGCTCAAGCAAGGGATC-AGCT
64 ACGAAACGAGCGTGCGGGTGCTAACT-GATCGGAGAGGCATAATGCACAAGCAGGGGATCGA-CT
* * * * * * *
10240014 CGATCTCCCTCTGCATGCTGCCGATCCCGCTGCCAGTCTTGCTGCCACAACCCTCAGTCCGGTTG
127 CGATCCCCCTCTGCGTGCTGACAATCCCGCTACCAGTCTTGCTGCCACAACCCTCAGTCCAGCTG
* * **
10240079 GGGCTTAGACATGGAATGAACTCCGTATGCCTAAAGCCAACCCACAAAACGAGCGTGTGGGTGCT
192 GGGCTTAGACATGGAATGAACTCCGTATGCCTAAAGCCAACCCACAAAACGAGCGGGCGGGCACT
* * **
10240144 CAATCGATCGGAGAGGCAGAATGCACAAGCCAAGGATCGGCCCGGTCCCTCCTGTGTACTATCGA
257 CAATCGATCGGAGAGGCAAAATGCACAAGCCAAGGATCGACCCGGTCCCTCCTACGTACTATCGA
* *
10240209 TCCTGCTGCTGGTCCTGCTGTCGCAACCCTTAGTTCAGTCTGATCTTAGACATGGAATGAACTCC
322 TCCTGCTCCTGGTCCTGCTGTCGCAACCCTCAGTTCAGTCTGATCTTAGACATGGAATGAACTCC
* * * *
10240274 GTATGCTAAGACATGGAATTAACTCTGTATGCCTAAGCTAACCCACGAAAGGAGCGTGCGAGAGC
387 GTATGCTAAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGAGC
* * *
10240339 TCAGCCGATCGGAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCGGTCCCCCCTGCGTGCAGTCA
452 TCAACCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTACGTGCAGTCA
10240404 ATCCTGCTG
517 ATCCTGCTG
* * * * * * *
10240413 CCACAACCCTTGGTCCGGTCTAATATTATAAT-GGGAATGAACTCCGTATGCCTAAGTCAACCCA
1 CCATAACCCTCGGTCTGGTCTGATCTTAGACTAGGG-ATGAACTCCGTATGCCTAAGTCAACCCA
** * * * ** * * * *
10240477 CGAAACGAGCGTGCGGGCACTCAGCCGACCGGAGAGGCATAATGTGCAACCCGGAGGATCGGCCC
65 CGAAACGAGCGTGCGGGTGCT-AACTGATCGGAGAGGCATAATGCACAAGCAGG-GGATCGACTC
* * * * * * *
10240542 GGTCCCCCTCTGTGTGCTGACAATCCTGCTACCGGTCTTGCTTCCACAACCCTTAGTTCAGCTGG
128 GATCCCCCTCTGCGTGCTGACAATCCCGCTACCAGTCTTGCTGCCACAACCCTCAGTCCAGCTGG
**
10240607 GGCTTAGACATGGAATGAACTCCGTATGCCT-AAGCCAACCCATGAAACGAGCGGGCGGGCACTC
193 GGCTTAGACATGGAATGAACTCCGTATGCCTAAAGCCAACCCACAAAACGAGCGGGCGGGCACTC
* * *** ** * * *
10240671 AGTCGGTCGGAGAGGCAAAATGTGTAAGCCGTGGATCGACTCGGTCTACC-CCTACGTGCTGTCG
258 AATCGATCGGAGAGGCAAAATGCACAAGCCAAGGATCGACCCGGTC--CCTCCTACGTACTATCG
* * *
10240735 ATCCTGCTCCTGGTCCTGCTGTCGCAACCCTCGGTTC-GATCTGATCTTGGA-TTGGGAATGAAC
321 ATCCTGCTCCTGGTCCTGCTGTCGCAACCCTCAGTTCAG-TCTGATCTTAGACAT-GGAATGAAC
* *
10240798 TCCGTATGCTTAGACATGGAATGAACTCCT-TATGCCTAAGCCAACCCATGAAACGAGCGTACG-
384 TCCGTATGCTAAGACATGGAATGAACT-CTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGA
* * * * ** **
10240861 GTTGCTCAACCTGCT-GGAGAGGTAGAATGCGCAAGCCGGGGATTGGCTTGGTCCCCCCGTACGT
448 G-AGCTCAACC-GATCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCC-TACGT
* *
10240925 GCTA-TCGATCTTGCTG
510 GC-AGTCAATCCTGCTG
* *
10240941 CCGTAACCCTCGGTCTGGTCTGATCTTAGACTAGGGATGAACTCCGTATGCCTGAGTCAACCCAC
1 CCATAACCCTCGGTCTGGTCTGATCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCAC
* * * *
10241006 GAAACGAGTGTGCGGGTGCTGAACTAATCGGAGAGGCATAATGCACAAGCTGGGGATCGACTCGT
66 GAAACGAGCGTGCGGGTGCT-AACTGATCGGAGAGGCATAATGCACAAGCAGGGGATCGACTCGA
* *
10241071 TCCCCCTCTGCGTGCTGTCAATCTCGCT
130 TCCCCCTCTGCGTGCTGACAATCCCGCT
10241099 GCCACAACCC
Statistics
Matches: 555, Mismatches: 115, Indels: 31
0.79 0.16 0.04
Matches are distributed among these distances:
525 2 0.00
526 149 0.27
527 285 0.51
528 115 0.21
529 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (525 bp):
CCATAACCCTCGGTCTGGTCTGATCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGCGGGTGCTAACTGATCGGAGAGGCATAATGCACAAGCAGGGGATCGACTCGAT
CCCCCTCTGCGTGCTGACAATCCCGCTACCAGTCTTGCTGCCACAACCCTCAGTCCAGCTGGGGC
TTAGACATGGAATGAACTCCGTATGCCTAAAGCCAACCCACAAAACGAGCGGGCGGGCACTCAAT
CGATCGGAGAGGCAAAATGCACAAGCCAAGGATCGACCCGGTCCCTCCTACGTACTATCGATCCT
GCTCCTGGTCCTGCTGTCGCAACCCTCAGTTCAGTCTGATCTTAGACATGGAATGAACTCCGTAT
GCTAAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGAGCTCAA
CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTACGTGCAGTCAATCC
TGCTG
Found at i:10241872 original size:26 final size:26
Alignment explanation
Indices: 10241836--10241888 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10241826 CTGGTCCAAT
*
10241836 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATAAACTACGTATG
* *
10241862 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTACGTATG
10241888 C
1 C
10241889 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTACGTATG
Found at i:10242255 original size:26 final size:26
Alignment explanation
Indices: 10242217--10242269 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10242207 TAGGTCCGAT
*
10242217 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
10242243 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
10242269 C
1 C
10242270 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:10242722 original size:158 final size:154
Alignment explanation
Indices: 10242243--10242744 Score: 422
Period size: 158 Copynumber: 3.2 Consensus size: 154
10242233 ACTTTGTATG
* ** * *
10242243 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAATGAGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
10242308 CGG-CTGGAGAGGCAGAATGCACAAGCTGGGGATTGGCCCGGTCCAC-CTTTGCGTGCTGTCGAT
66 CGGTC-GGAGAGGCAGAATGCACAAGC-CGGGATTGGCCCGGTCC-CTC-CTGCGTGCTGTCGAT
* * * *
10242371 CCTGCTACCACAACCCTCGGTCTGGTTTCAT
127 CC-GCT-GCGCAACCCTCGGTCT-GTCTGAT
* * * * * *
10242402 CTTAGAC-TGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGAGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** * * * * *
10242466 CCGGTCGAAAAGGCATAATGCGTATGCCGGGAATCGACCCAGT-CCTCCTTTTCGTGCTG-CTGA
65 CCGGTCGGAGAGGCAGAATGCACAAGCCGGG-ATTGGCCCGGTCCCTCC--TGCGTGCTGTC-GA
* * **
10242529 TCCCGTTGCGCAACCCTCGGTCTGGCTGGGG
126 T-CCGCTGCGCAACCCTCGGTCTGTCT-GAT
* ** * **
10242560 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTTACGAAACGGGCGTGCGGGCGCTCAAT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
10242625 CGGTCGGAGAGGTAGAATACACAAGCCGAGGATTGGCCCGGTCCCTCCTGCGTGCTGTCGATCCG
66 CGGTCGGAGAGGCAGAATGCACAAGCCG-GGATTGGCCCGGTCCCTCCTGCGTGCTGTCGATCCG
10242690 ACTGCTGCAACCCTCGGTCTGATCTGAT
130 -CTGC-GCAACCCTCGGTCTG-TCTGAT
* *
10242718 CTTAGACTAT-GAATAAACTTCGTATGC
1 CTTAGAC-ATGGAATGAACTCCGTATGC
10242745 TTAGACTAGG
Statistics
Matches: 264, Mismatches: 62, Indels: 35
0.73 0.17 0.10
Matches are distributed among these distances:
156 3 0.01
157 17 0.06
158 138 0.52
159 103 0.39
160 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (154 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCACAAGCCGGGATTGGCCCGGTCCCTCCTGCGTGCTGTCGATCCGC
TGCGCAACCCTCGGTCTGTCTGAT
Found at i:10242762 original size:26 final size:26
Alignment explanation
Indices: 10242718--10242770 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10242708 CTGATCTGAT
* *
10242718 CTTAGACTATGAATAAACTTCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* *
10242744 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
10242770 C
1 C
10242771 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:10243475 original size:159 final size:158
Alignment explanation
Indices: 10243120--10243484 Score: 387
Period size: 158 Copynumber: 2.3 Consensus size: 158
10243110 AACTCCGTAT
* *
10243120 GCTTAGACATGGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTTCC-TATGCCTAAGCCAACCCACGAAACGAACGTGCAGGCACTCA
* * * * *
10243184 ACCGGTCTGAGAGGTAGAATGCATAAGTCGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATC
65 ACCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGACTCGATCCCCCCTGCGTGCTGTCGATC
** *
10243249 TTACTACCGCAACCCTCAGTCTGGTCTGA
130 CCACTACCACAACCCTCAGTCTGGTCTGA
* * ** * * * *
10243278 TCTTAGAC-TAGGAATAAACTTTGTATGCCTAAGTCAACCCACGAAATGAACGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTTCCTATGCCTAAGCCAACCCACGAAACGAACGTGCAGGCACTCA
* * * * *
10243342 GCCGGTCGGAGAGGCATAATGCACAAGCCGGGGATCGACTCGGTCCCCTTCTGCGTGCTGTCGGT
65 ACCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGACTCGATCCCC-CCTGCGTGCTGTCGAT
* * * * *
10243407 CCCACTGCCATAAGCTTCAGT-TCGG-CTAGG
129 CCCACTACCACAACCCTCAGTCT-GGTCT-GA
* *
10243437 GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCAATGAAACG
1 GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCACGAAACG
10243485 GGCGTGGGCA
Statistics
Matches: 165, Mismatches: 36, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.01
158 93 0.56
159 70 0.42
160 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCACGAAACGAACGTGCAGGCACTCAA
CCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGACTCGATCCCCCCTGCGTGCTGTCGATCC
CACTACCACAACCCTCAGTCTGGTCTGA
Found at i:10243603 original size:26 final size:26
Alignment explanation
Indices: 10243574--10243626 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10243564 CCAATCCGAT
10243574 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
*
10243600 CTTAGACTGGAGGTGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
10243626 C
1 C
10243627 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:10243607 original size:882 final size:875
Alignment explanation
Indices: 10241834--10243493 Score: 1984
Period size: 882 Copynumber: 1.9 Consensus size: 875
10241824 GTCTGGTCCA
* * *
10241834 ATCTTAGACTGGGAATGAACTACGTATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTAGGAATAAACTACGTATGCTTAGACTAGGGATAAACTCCGTATGCCTAAGTCAAC
* * * **
10241899 CCACGAAATGAGCGTGCGGATGCTCAGCCGGCCAGAGAGGCCGATCGGAGAGGCATAATGTGCAA
66 CCACGAAATGAGCGTACGGACGCTCAGCCGGCCAGAAAGGCCGATCGGAGAGGCATAATGCACAA
* * * * **
10241964 GTCGGGGATCAACCCAGTCCTCCTCTTTGTGCTACCGATCCCGCTGCCGGTCCTGCTGCCACAAC
131 GCCAGGGATCAACCCAATCCCCCTCTACGTGCTACCGATCCCGCTGCCGGTCCTGCTGCCACAAC
*
10242029 CCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCACGAAACGA
196 CCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
* * * * * **
10242094 GCTTACAGGCGCTCAGTCGGTCAGAGAGGCAGAATTCACAAGCTGAGAATCGACCTCGTCCCCCC
261 GCGTACAGGCGCTCAGTCGGACAGAGAGGCAGAATTCACAAGCCGAAAAGCGACCTCGT---CAA
* * * *
10242159 ATGCATGCTGTCGATCCTGCTGCTGGTCCTGCTGCCGCAACCCTCGATTAGGTCCGATCTTAGAC
323 AAGCATGCTGTCGATCCTACTGCTGGTCCTACTGCCGCAACCCTCGATTAGGTCCGATCATAGAC
** * * *
10242224 TGGGAATGAACTTTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAAT
388 TGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAC
* * * *
10242289 GAGCATGCGGGCGCTCAGCCGGCTGGAGAGGCAGAATGCACAAGCTGGGGATTGGCCCGGTCCAC
453 GAGCATGCGGGCACTCAACCGGCTGGAGAGGCAGAATGCACAAGCTGGGGATCGGCCCGATCCAC
** * * * *
10242354 CTTTGCGTGCTGTCGATCCTGCTACCACAACCCTCGGTCTGGTTTCATCTTAGACTGGGAATAAA
518 CCCTGCGTGCTGTCGATCCTACTACCACAACCCTCAGTCTGGTCTCATCTTAGACTAGGAATAAA
**
10242419 CTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGAGCACTGAGCCGGTCGAAAAGGCATAA
583 CTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGAGCACTGAGCCGGTCGAAAAGGCATAA
** * * **
10242484 TGCGTATGCCGGGAATCGACCCAGTCCTCCTTTTCGTGCTGCTGATCCCGTTGCGCAACCCTCGG
648 TGCACAAGCCGGGAATCGACCCAGTCCTCCTTTGCGTGCTGCTGATCCCACTGCGCAACCCTCGG
* **
10242549 TCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTTACGAAACGGGCGTGC
713 TCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGGGCGT-C
** * * * *
10242614 GGGCGCTCAATCGGTCGGAGAGGTAGAATACACAAGCCGAGGATTGGCCCGGTCCCTCCTGCGTG
777 GGGCG--CAATC-GTCACAGAGCTAGAATACACAAGCCCAGGATTGGCCCGATCCCTCCTGCGTA
** * * * * ** *
10242679 CTGTCGATCCGACTGCTGCAACCCTCGGTCTGATCTG
839 CCCTCGATCCAACCGATGCAACACTCGGAATGATCCG
* * *
10242716 ATCTTAGACTATGAATAAACTTCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTAGGAATAAACTACGTATGCTTAGACTAGGGATAAACTCCGTATGCCTAAGTCAAC
* * * * *
10242781 CCACGAAATGAGCGTACGGGCGCTCAGCCGGCCAGAAAGGTCG-GCTGGAGAGGTATAATGCATA
66 CCACGAAATGAGCGTACGGACGCTCAGCCGGCCAGAAAGGCCGATC-GGAGAGGCATAATGCACA
* ** ** * * *
10242845 AGCCAGGGATTAGGCCAATCCCCCTCTACGTGCTGGCGATCTCGCTGCTGGTCTTGCTGCCACAA
130 AGCCAGGGATCAACCCAATCCCCCTCTACGTGCTACCGATCCCGCTGCCGGTCCTGCTGCCACAA
*
10242910 CCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATG
195 CCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
* * *
10242975 AGCGTGCAGGCGCTCAG-CAGGACAGAGAGGCAGAATGT-GCATGCCGAAAAGGCAGA-CT-GT-
260 AGCGTACAGGCGCTCAGTC-GGACAGAGAGGCAGAAT-TCACAAGCCGAAAA-GC-GACCTCGTC
* * * * *
10243035 AAAAGCGTGCTGTCGATCCTACTGCTGGTCCTACTGTCGTAACCCTCG-TTCTGGTCTGATCATA
321 AAAAGCATGCTGTCGATCCTACTGCTGGTCCTACTGCCGCAACCCTCGATT-AGGTCCGATCATA
*
10243099 GACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
385 GACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAA
* * * *
10243164 AACGAGCGTGCGGGCACTCAACCGGTCT-GAGAGGTAGAATGCATAAG-TCGGGGATCGGCTCGA
450 AACGAGCATGCGGGCACTCAACCGG-CTGGAGAGGCAGAATGCACAAGCT-GGGGATCGGCCCGA
* * *
10243227 TCC-CCCCTGCGTGCTGTCGATCTTACTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTAGGA
513 TCCACCCCTGCGTGCTGTCGATCCTACTACCACAACCCTCAGTCTGGTCTCATCTTAGACTAGGA
** * * * *
10243291 ATAAACTTTGTATGCCTAAGTCAACCCACGAAATGAACGTGC-AGGCGCTGAGCCGGTCGGAGAG
578 ATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGA-GCACTGAGCCGGTCGAAAAG
* * * *
10243355 GCATAATGCACAAGCCGGGGATCGACTCGGTCC-CCTTCTGCGTGCTG-TCGGTCCCACTGC-CA
642 GCATAATGCACAAGCCGGGAATCGACCCAGTCCTCCTT-TGCGTGCTGCT-GATCCCACTGCGC-
* * * * *
10243417 TAAGCTTCAGT-TCGGCTAGGGCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCAATGA
704 -AACCCTCGGTCT-GGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGA
10243481 AACGGGCGT-GGGC
767 AACGGGCGTCGGGC
10243494 AGAATGCACA
Statistics
Matches: 664, Mismatches: 100, Indels: 34
0.83 0.13 0.04
Matches are distributed among these distances:
876 11 0.02
877 153 0.23
878 224 0.34
879 2 0.00
881 2 0.00
882 266 0.40
883 4 0.01
884 2 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (875 bp):
ATCTTAGACTAGGAATAAACTACGTATGCTTAGACTAGGGATAAACTCCGTATGCCTAAGTCAAC
CCACGAAATGAGCGTACGGACGCTCAGCCGGCCAGAAAGGCCGATCGGAGAGGCATAATGCACAA
GCCAGGGATCAACCCAATCCCCCTCTACGTGCTACCGATCCCGCTGCCGGTCCTGCTGCCACAAC
CCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
GCGTACAGGCGCTCAGTCGGACAGAGAGGCAGAATTCACAAGCCGAAAAGCGACCTCGTCAAAAG
CATGCTGTCGATCCTACTGCTGGTCCTACTGCCGCAACCCTCGATTAGGTCCGATCATAGACTGG
GAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAG
CATGCGGGCACTCAACCGGCTGGAGAGGCAGAATGCACAAGCTGGGGATCGGCCCGATCCACCCC
TGCGTGCTGTCGATCCTACTACCACAACCCTCAGTCTGGTCTCATCTTAGACTAGGAATAAACTC
CGTATGCCTAAGTCAACCCACGAAACGAACGTGCGAGCACTGAGCCGGTCGAAAAGGCATAATGC
ACAAGCCGGGAATCGACCCAGTCCTCCTTTGCGTGCTGCTGATCCCACTGCGCAACCCTCGGTCT
GGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGGGCGTCGGGC
GCAATCGTCACAGAGCTAGAATACACAAGCCCAGGATTGGCCCGATCCCTCCTGCGTACCCTCGA
TCCAACCGATGCAACACTCGGAATGATCCG
Found at i:10244333 original size:26 final size:26
Alignment explanation
Indices: 10244295--10244347 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10244285 GGCTCAAAAT
*
10244295 CTTAGACTGGGAAAGAACTCCTTATG
1 CTTAGACTGGGAAAGAACTCCATATG
*
10244321 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAAAGAACTCCATATG
10244347 C
1 C
10244348 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:10244888 original size:158 final size:159
Alignment explanation
Indices: 10244481--10244881 Score: 371
Period size: 159 Copynumber: 2.5 Consensus size: 159
10244471 TGGTCCAATC
* ** * * * * * *
10244481 TTAGACTTGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCG-AGCGGGCGCTGAGC
1 TTAGACATGGAATGAACTCACTATGCCTAAGCCAACCCATGAAACAAGCGTA-CGAGCGCTCAGC
* * * * * ** * * * *
10244545 TGATC-GAAGAGGCATAATGCGCAAGCTGGGGATC-AGCCCGATCCCCCTCTATGTGCTGCCGGT
65 CG-CCAGAAGAAGCAGAATGCACAAGCCAGGGATCGA-TCCGGTCCCCCTCCATGTGCTGCCGAT
* * * * *
10244608 CCTGCTGCTACAACCCTTGGTCCGGCTGGGGT
128 CCCGCCGCCACAACACTTGGTCCGACTGGGGT
* * * * * *
10244640 TTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAATAAGCGTACGGGTGCTGAGCC
1 TTAGACATGGAATGAACTCACTATGCCTAAGCCAACCCATGAAACAAGCGTACGAGCGCTCAGCC
* * * * *
10244705 GGCTGAAGAGGCATAATGCACAAGCCAGGGATCGATCCGGTCCCCCTCCGTGTGCTGCCGATCCC
66 GCCAGAAGAAGCAGAATGCACAAGCCAGGGATCGATCCGGTCCCCCTCCATGTGCTGCCGATCCC
* *
10244770 GCCGCCACAACAGTTGGTCCGACT-TGGT
131 GCCGCCACAACACTTGGTCCGACTGGGGT
* *
10244798 TTAGACATGGAATGAACTCACTATGCCTAAGCCAACCCATGAAACAGGTGTACGAGCGCTCAGCC
1 TTAGACATGGAATGAACTCACTATGCCTAAGCCAACCCATGAAACAAGCGTACGAGCGCTCAGCC
10244863 GACCAGAA-AAGCAGAATGC
66 G-CCAGAAGAAGCAGAATGC
10244882 GTAAGCCGAG
Statistics
Matches: 201, Mismatches: 37, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
158 71 0.35
159 128 0.64
160 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.19
Consensus pattern (159 bp):
TTAGACATGGAATGAACTCACTATGCCTAAGCCAACCCATGAAACAAGCGTACGAGCGCTCAGCC
GCCAGAAGAAGCAGAATGCACAAGCCAGGGATCGATCCGGTCCCCCTCCATGTGCTGCCGATCCC
GCCGCCACAACACTTGGTCCGACTGGGGT
Found at i:10244907 original size:158 final size:159
Alignment explanation
Indices: 10244580--10244908 Score: 358
Period size: 158 Copynumber: 2.1 Consensus size: 159
10244570 CTGGGGATCA
* * * * * * *
10244580 GCCCGATCCCCCTCTATGTGCTGCCGGTCCTGCTGCTACAACCCTTGGTCCGGCTGGGGTTTAGA
1 GCCCGATCCCCCTCCATGTGCTGCCGATCCCGCCGCCACAACACTTGGTCCGACTGGGGTTTAGA
* * * * * * * *
10244645 CATGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAATAAGCGTACGGGTGCTGAGCCGGCTG
66 CATGGAATGAACTCACTATGCCTAAGCCAACCCATGAAACAAGCGTACGAGCGCTCAGCCGCCAG
* * * *
10244710 AAGAGGCATAATGCACAAGCCAGGGATCG
131 AAGAAGCAGAATGCACAAGCCAGAGAACG
** * * * *
10244739 ATCCGGTCCCCCTCCGTGTGCTGCCGATCCCGCCGCCACAACAGTTGGTCCGACT-TGGTTTAGA
1 GCCCGATCCCCCTCCATGTGCTGCCGATCCCGCCGCCACAACACTTGGTCCGACTGGGGTTTAGA
* *
10244803 CATGGAATGAACTCACTATGCCTAAGCCAACCCATGAAACAGGTGTACGAGCGCTCAGCCGACCA
66 CATGGAATGAACTCACTATGCCTAAGCCAACCCATGAAACAAGCGTACGAGCGCTCAGCCG-CCA
**
10244868 GAA-AAGCAGAATGCGTAAGCC-GAGAACTG
130 GAAGAAGCAGAATGCACAAGCCAGAGAAC-G
10244897 GCCCGATCCCCC
1 GCCCGATCCCCC
10244909 CTGCGTGCTG
Statistics
Matches: 136, Mismatches: 32, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
157 4 0.03
158 85 0.62
159 47 0.35
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
GCCCGATCCCCCTCCATGTGCTGCCGATCCCGCCGCCACAACACTTGGTCCGACTGGGGTTTAGA
CATGGAATGAACTCACTATGCCTAAGCCAACCCATGAAACAAGCGTACGAGCGCTCAGCCGCCAG
AAGAAGCAGAATGCACAAGCCAGAGAACG
Found at i:10245808 original size:26 final size:26
Alignment explanation
Indices: 10245772--10245824 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10245762 CTGGTCTGAT
10245772 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
10245798 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10245824 C
1 C
10245825 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10245907 original size:817 final size:801
Alignment explanation
Indices: 10244640--10246202 Score: 1878
Period size: 817 Copynumber: 1.9 Consensus size: 801
10244630 CGGCTGGGGT
* * * *
10244640 TTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAATAAGCGTACGGGTGCTGAGCC
1 TTAGACAGGGAATGAACTCCCTATGCCTAAGTCAACCAACGAAATAAGCGTACGGGCGCTGAGCC
** * * *
10244705 GGCTGAAGAGGCATAATGCACAAGCCAGGGATCGATCCGGTCCCCCTCCGTGTGCTGCCGATCCC
66 GGCCAAAAAGGCATAATGCACAAGCCAGGGATCGACCCGGTCCCCCTCCGCGTGCTGCCGATCCC
* * * * *
10244770 GCCGCCACAACAGTTGGTCCGACTTGGTTTAGACATGGAATGAACTCACTATGCCTAAGCCAACC
131 GCCGCCACAACACTCGATCCGACTAGGTTTAGACATGGAATGAACACACTATGCCTAAGCCAACC
* * *
10244835 CATGAAACAGGTGTACGAGCGCTCAGCCGACCAGAAAAGCAGAATGCGTAAGCCGAGAACTGGCC
196 CATGAAACAGGCGTACGAGCGCTCAGCCGACCAGAAAAGCAGAATACGCAAGCCGAGAACTGGCC
* * *
10244900 CGATCCCCCCTGCGTGCTGTCAATCCTACTACCGCAACCCTCGGTTTAATCTGATCTTAGACTGG
261 CGATCCCCCCTACGTGCTGTCAATCCTACTACCGCAACCCTCAGTCTAATCTGATCTTAGACTGG
* * *
10244965 GAATGAACTCCGTATGCTTAGACTGCAGATGACCTCCGTATGCCTAAGTCAACCCATGAAGCGAG
326 GAATGAACTCCGTATGCTTAGACTGCAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * *
10245030 CGTGCGGGCGTTCAGTCGGCCAAAGAGGCATAATGCACAAGCAGGGGATCAGCCCGGTCCCCCTT
391 CGTACAGGCGCTCAGTCGGCCAAAGAGGCATAATACACAAGCAGGGGATCAGCCCGGT--CCCTT
* * *
10245095 TACGTGCTGTCGATCTCGTTACCGGTCCTGCTGCCACAACCCTCGGTTCGACTGGGGCTTAGAG-
454 T-C-TGC-GT-G-T-T-G-T--CGGTCCCGCTGCCACAAACCTCGGTCCGACTGGGGCTTAG-GC
* * * *
10245159 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCGA
508 ATGGAATGAACTCCCTATGCCTAAGACAACCCACAAAACGAGCGTACGGGCGCTCAGCCAGCCGA
* * * * * * *
10245224 AAAGACAGAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCCTTGCGTGCTATCGATCCTGCTATC
573 AAAGACAAAATGCGCAAGACGAGGACCGGCCCGGTACCCTC-TACGTGCTATCGATCCTGCTACC
* * * * *** * *
10245288 GCAACCTTCGGTCGGGTTTGATCTTAGACTGGGAAAGAACTTCATATGCTTCAAAAT-GGAATGA
637 GCAACCCTCGATCCGATCCAATCTTAGACT-AGAAAGAACTCCATATGCTT-AAAATGGGAATGA
* *
10245352 ACTCCGTATGCCTATGCCAACCCACTAAAACGAGCTTACGGGCACTCAGCTGCCCAGAGAGGCAG
700 ACTCCGTATGCCTAAGCCAACCCAC-AAAACGAGCGTACGGGCACTCAGCTGCCCAGAGAGGCAG
10245417 AATGTGCAAGCCGGGGATCGACCCAATCTGGTCCGATC
764 AATGTGCAAGCCGGGGATCGACCCAATCTGGTCCGATC
* * * *
10245455 TTAGACTAGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAATGAGCGTGCGGGCGTTGAGC
1 TTAGAC-AGGGAATGAACTCCCTATGCCTAAGTCAACCAACGAAATAAGCGTACGGGCGCTGAGC
* * * * * * * *
10245520 TGTCCAAAAAGGCATAATGCACAAGTCGGGGATCGGCCCGGTGCCCCTCTGCGTGCTGCCGGTCC
65 CGGCCAAAAAGGCATAATGCACAAGCCAGGGATCGACCCGGTCCCCCTCCGCGTGCTGCCGATCC
* * * *
10245585 CGCTGCCATAACCCTCGATCCGACTGAGGTTTAGACATGGAATGAACACCCTATGCCTAAGCCAA
130 CGCCGCCACAACACTCGATCCGACT-AGGTTTAGACATGGAATGAACACACTATGCCTAAGCCAA
* * * * ** * * * *
10245650 CCCATGAAACGGGCGTGCGGGTGCTCATTCGACC-GAAGAGGCAGAATACGCAAGTCGGGGA-TC
194 CCCATGAAACAGGCGTACGAGCGCTCAGCCGACCAGAA-AAGCAGAATACGCAAGCCGAGAACT-
* * * * **
10245713 GGTCCGGTCCCCCTTACGTGCTGTCGATCCTACTACCGCAACCCTCAGTCTGGTCTGATCTTAGA
257 GGCCCGATCCCCCCTACGTGCTGTCAATCCTACTACCGCAACCCTCAGTCTAATCTGATCTTAGA
** *
10245778 CTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAA
322 CTGGGAATGAACTCCGTATGCTTAGACTGCAGATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * *
10245843 CGAGCGTACAGGCGCTGAG-CAGGCCGAAGAGGCATAATACGCAAGCTGGGGATCGGCCCGGTCC
387 CGAGCGTACAGGCGCTCAGTC-GGCCAAAGAGGCATAATACACAAGCAGGGGATCAGCCCGGTCC
*
10245907 CTTTCTGCGTGTTGTCGGTCCCGCTGCCACAAACCTCGGTCCGGCTGGGGCTTAGGCATGGAATG
451 CTTTCTGCGTGTTGTCGGTCCCGCTGCCACAAACCTCGGTCCGACTGGGGCTTAGGCATGGAATG
* ** * * * * *
10245972 AACTCCCTATTCCTAAGACAACCCATGAAACGGGCGTACGGGCGCTCAGCCAGCTGGAGAGGCAA
516 AACTCCCTATGCCTAAGACAACCCACAAAACGAGCGTACGGGCGCTCAGCCAGCCGAAAAGACAA
* * *
10246037 AATGCGTAAGACGAGGACCGGCTCGGTACCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTC
581 AATGCGCAAGACGAGGACCGGCCCGGTACCCTCTACGTGCTATCGATCCTGCTACCGCAACCCTC
* * * *
10246102 GATCCGATCCAATCTTAGACTAGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGC
646 GATCCGATCCAATCTTAGACTAGAAAGAACTCCATATGCTTAAAATGGGAATGAACTCCGTATGC
** * *
10246167 CTAAGTTAACCCACGAAACGAGCGTACGGGCGCTCA
711 CTAAGCCAACCCACAAAACGAGCGTACGGGCACTCA
10246203 ACCGGTCGGA
Statistics
Matches: 628, Mismatches: 112, Indels: 28
0.82 0.15 0.04
Matches are distributed among these distances:
803 22 0.04
804 46 0.07
805 161 0.26
806 4 0.01
807 1 0.00
808 1 0.00
809 1 0.00
810 1 0.00
811 1 0.00
812 2 0.00
813 3 0.00
814 1 0.00
815 12 0.02
816 126 0.20
817 246 0.39
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (801 bp):
TTAGACAGGGAATGAACTCCCTATGCCTAAGTCAACCAACGAAATAAGCGTACGGGCGCTGAGCC
GGCCAAAAAGGCATAATGCACAAGCCAGGGATCGACCCGGTCCCCCTCCGCGTGCTGCCGATCCC
GCCGCCACAACACTCGATCCGACTAGGTTTAGACATGGAATGAACACACTATGCCTAAGCCAACC
CATGAAACAGGCGTACGAGCGCTCAGCCGACCAGAAAAGCAGAATACGCAAGCCGAGAACTGGCC
CGATCCCCCCTACGTGCTGTCAATCCTACTACCGCAACCCTCAGTCTAATCTGATCTTAGACTGG
GAATGAACTCCGTATGCTTAGACTGCAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
CGTACAGGCGCTCAGTCGGCCAAAGAGGCATAATACACAAGCAGGGGATCAGCCCGGTCCCTTTC
TGCGTGTTGTCGGTCCCGCTGCCACAAACCTCGGTCCGACTGGGGCTTAGGCATGGAATGAACTC
CCTATGCCTAAGACAACCCACAAAACGAGCGTACGGGCGCTCAGCCAGCCGAAAAGACAAAATGC
GCAAGACGAGGACCGGCCCGGTACCCTCTACGTGCTATCGATCCTGCTACCGCAACCCTCGATCC
GATCCAATCTTAGACTAGAAAGAACTCCATATGCTTAAAATGGGAATGAACTCCGTATGCCTAAG
CCAACCCACAAAACGAGCGTACGGGCACTCAGCTGCCCAGAGAGGCAGAATGTGCAAGCCGGGGA
TCGACCCAATCTGGTCCGATC
Found at i:10246094 original size:343 final size:339
Alignment explanation
Indices: 10245454--10246444 Score: 1069
Period size: 343 Copynumber: 2.9 Consensus size: 339
10245444 CTGGTCCGAT
* * * * *
10245454 CTTAGACTAGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAATGAGCGTGCGGGCGTTGAG
1 CTTAGACT-GGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAG
* * * * * *
10245519 CTGTCCAAAAAGGCATAATGCACAAG-TCGGGGATCGGCCCGGTGCCCC--TCTGCGTGCTGCCG
65 CAGGCCGAAGAGGCATAATGCGCAAGCT-GGGGATCGGCCCGGT-CCCCTTTCTGCGTGCTGTCG
* * * * *
10245581 GTCCCGCTGCCATAACCCTCGATCCGACTGAGGTTTAGACATGGAATGAACACCCTATGCCTAAG
128 GTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * * * *
10245646 CCAACCCATGAAACGGGCGTGCGGGTGCTCATTCGACCGAAGAGGCAGAATACGCAAGTCGGGGA
193 CCAACCCATGAAACGGGCGT-CGGGTGCTCAGTCG-CTGGAGAGGCAGAATGCGTAAG-CGAGGA
* * * * **
10245711 TCGG-TCCGGTCCCCCTTACGTGCTGTCGATCCTACTACCGCAACCCTC-AGTCTGGTCTGATCT
255 TCGGCT-CGGTCCCTC-TACGTGCTGTCGATCCTGCTACCGCAACCCTCGA-TCCGATCCAATCT
* *
10245774 TAGACTGGGAATGAACTCCGTATG
317 TAGACT-AGAATGAACTCCATATG
* *
10245798 CTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAGC
* *
10245863 AGGCCGAAGAGGCATAATACGCAAGCTGGGGATCGGCCCGGT-CCCTTTCTGCGTGTTGTCGGTC
66 AGGCCGAAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGGTCCCCTTTCTGCGTGCTGTCGGTC
* * * * *
10245927 CCGCTGCCACAAACCTCGGTCCGGCTGGGGCTTAGGCATGGAATGAACTCCCTATTCCTAAGACA
131 CCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * *
10245992 ACCCATGAAACGGGCGTACGGGCGCTCAGCCAGCTGGAGAGGCAAAATGCGTAAGACGAGGACCG
196 ACCCATGAAACGGGCGT-CGGGTGCTCAGTC-GCTGGAGAGGCAGAATGCGTAAG-CGAGGATCG
10246057 GCTCGGTACCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGATCCAATCTTAGAC
258 GCTCGGT-CCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGATCCAATCTTAGAC
10246122 TAGAATGAACTCCATATG
322 TAGAATGAACTCCATATG
* * *
10246140 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTACGGGCGCTCAAC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAGC
* * * * ** * *
10246205 CGGTCGGAGAGGCATAATGCGCAAGCCGAAGATCAGCCTGGTCCCCTTCTGCATACTGCCGATCT
66 AGGCCGAAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGGTCCCC-T-T---T-CTG-CG---T
* * * *
10246270 CGCTGTCGGTCCTGCTGCCACAACCCTTGGTCCGACTGGGGCTTACACATGGAATGAACTCCATA
121 -GCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
* * * * *
10246335 TGCCTAAGCCAACCCATAAAAAGAGGTGT-GGGTGCTAAGTCGATCGGAGAGGCAGAATGCGTAA
185 TGCCTAAGCCAACCCATGAAACG-GGCGTCGGGTGCTCAGTCGCT-GGAGAGGCAGAATGCGTAA
* * * *
10246399 GCCAGGGATCGACCCGGTCCCCTCTACGTGCTGCCGATCCTGCTAC
248 GCGA-GGATCGGCTCGGT-CCCTCTACGTGCTGTCGATCCTGCTAC
10246445 TGGTCCTGCT
Statistics
Matches: 542, Mismatches: 83, Indels: 35
0.82 0.13 0.05
Matches are distributed among these distances:
341 3 0.01
342 108 0.20
343 259 0.48
344 17 0.03
345 1 0.00
348 1 0.00
349 3 0.01
350 2 0.00
352 4 0.01
353 65 0.12
354 75 0.14
355 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (339 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAGC
AGGCCGAAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGGTCCCCTTTCTGCGTGCTGTCGGTC
CCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
ACCCATGAAACGGGCGTCGGGTGCTCAGTCGCTGGAGAGGCAGAATGCGTAAGCGAGGATCGGCT
CGGTCCCTCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGATCCAATCTTAGACTAGA
ATGAACTCCATATG
Found at i:10246143 original size:25 final size:26
Alignment explanation
Indices: 10246115--10246166 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10246105 CCGATCCAAT
10246115 CTTAGACT-AGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* * *
10246140 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
10246166 C
1 C
10246167 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:10248279 original size:157 final size:155
Alignment explanation
Indices: 10247741--10248312 Score: 447
Period size: 159 Copynumber: 3.6 Consensus size: 155
10247731 AACTCCATAT
* * * *
10247741 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCGCTCA-
* * * * * * * * * *
10247806 TCGGTCGGAGAGCCAGAATGCACAAGCCGGGGATCGACTCGATCCCCCCCTTCGTGCTGTCGGTC
65 --GGCCGAAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGATCCCCCTCTGCATGCTGTCGATC
* * * **
10247871 CTGCTGCCGCAACAC-TCGATCCGGTCC--AA
127 CCGCTGCCACAACCCTTC-ATCC-G-CCTGGG
* * * ** * * * * * * * *
10247900 CCTTAAAC-TCAGAATGAACTCTGTATGCATTAGTCAACCCACCAAACGAACGTGCAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCGCT--
* * * ** *
10247964 GCTGGCCGAAGAGGCATAATGCGTAAGCCGAGGATCGGCCCGATCCCCCTCTGTGTGCTGTCGGT
63 -CAGGCCGAAGAGGCAGAATGCGCAAGCCG-GGATCGGCCCGATCCCCCTCTGCATGCTGTCGAT
*
10248029 CCCGCTGCCACAACCCTTGATCCGCCTGGG
126 CCCGCTGCCACAACCCTTCATCCGCCTGGG
* * *
10248059 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCGCTC-A
* *
10248124 CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCTCCC-CTGCATGCTGTCGATC
65 --GGCCGAAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGATCCCCCTCTGCATGCTGTCGATC
* * *
10248188 CCGCTGCCATAACCC-TCATTCGGCTGGG
127 CCGCTGCCACAACCCTTCATCCGCCTGGG
* * * * *
10248216 GCTTAGACATGTAATGAACTCCCTATGTCTAAGCCAACCCATGAAACGAGTGTCCGGGTGCTCA-
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCGCTCAG
* * *
10248280 GTCGTAGAGGCAGAATGCGCAAGTCTGGGATCG
66 GCCGAAGAGGCAGAATGCGCAAG-CCGGGATCG
10248313 ACCTGATCAC
Statistics
Matches: 331, Mismatches: 68, Indels: 34
0.76 0.16 0.08
Matches are distributed among these distances:
153 28 0.08
154 1 0.00
156 2 0.01
157 67 0.20
158 30 0.09
159 199 0.60
160 3 0.01
162 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCGCTCAG
GCCGAAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGATCCCCCTCTGCATGCTGTCGATCCCGC
TGCCACAACCCTTCATCCGCCTGGG
Found at i:10248406 original size:26 final size:26
Alignment explanation
Indices: 10248370--10248422 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10248360 CCGATTTGAT
10248370 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* *
10248396 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
10248422 C
1 C
10248423 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:10248744 original size:171 final size:171
Alignment explanation
Indices: 10248408--10248756 Score: 362
Period size: 171 Copynumber: 2.0 Consensus size: 171
10248398 TAGATTGGGG
* * ** * *
10248408 ATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTCAACCGATCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAACCGATCGAAGAGG
* * * * ** * * *
10248473 CATAATGTGCAAGTCGGGGATCAGTTCGATCCATTTCTGTGTGCTACCGATCCCGCTGTCGGTCC
66 CAGAATCTGCAAGCCAGGGATCAGTTCGATCCACCTCTATGCGCTACCGATCCCACTGTCGGTCC
*
10248538 TGCTACCACAACCCTCGGTCTAGCTGGGGCTTAGACAAGGA
131 TGCTACCACAACCCTCGGTCTAGCTGGAGCTTAGACAAGGA
* * **
10248579 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGTGCTCAGTCGATCGAAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAACCGATCGAAGAGG
* * * *
10248644 CAGAATCTGCAAGCCAGGGATCGGTTCGGTCC-CCCCTTATGCGCTACCGATCTCACTG-CTGGT
66 CAGAATCTGCAAGCCAGGGATCAGTTCGATCCACCTC-TATGCGCTACCGATCCCACTGTC-GGT
** * * * * **
10248707 CCTGCTGTCGCAACCCTCTGTCTGGTCT-GATCTTAGACTGGGA
129 CCTGCTACCACAACCCTCGGTCTAG-CTGGAGCTTAGACAAGGA
10248750 ATGAACT
1 ATGAACT
10248757 TTGTATGCTT
Statistics
Matches: 143, Mismatches: 32, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
170 2 0.01
171 139 0.97
172 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (171 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAACCGATCGAAGAGG
CAGAATCTGCAAGCCAGGGATCAGTTCGATCCACCTCTATGCGCTACCGATCCCACTGTCGGTCC
TGCTACCACAACCCTCGGTCTAGCTGGAGCTTAGACAAGGA
Found at i:10248776 original size:26 final size:26
Alignment explanation
Indices: 10248738--10248790 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10248728 CTGGTCTGAT
10248738 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTTGTATG
10248764 CTTAGACAT-GGAATGAACTTTGTATG
1 CTTAGAC-TGGGAATGAACTTTGTATG
10248790 C
1 C
10248791 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTTGTATG
Found at i:10249064 original size:154 final size:156
Alignment explanation
Indices: 10248769--10249198 Score: 400
Period size: 154 Copynumber: 2.8 Consensus size: 156
10248759 GTATGCTTAG
* * * * * *
10248769 ACATGGAATGAACTTTGTATGCCTAAGCCAACCCACGAAACGAACGTACGGGCGCTCAGCCGGTC
1 ACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCC
* * * * * ** *
10248834 GAAGAGGCAGAATGTGCAAGTCGGGGATCGGCCTGGTCCCTGCCTGTGTGCTGTCGATCCTGCTG
66 GAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCTGGTCCCTCCCTGCGTGCTGTCGATCCCACTA
**
10248899 CTGCAACCCTCGATCC-GAT-ATTAA
131 CCACAACCCTCGATCCGGATGATTAA
* * * *
10248923 AC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCATTGAGCTGGC
1 ACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGC
* * *
10248987 CGGAGAGGCATAATGCGCAAGCCGGGGATCAG-CTCGGTCCC-CCTCTGCGTGCTGTCGGTCCCA
65 CGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCT-GGTCCCTCC-CTGCGTGCTGTCGATCCCA
* * * *
10249050 CTACCACAAGCCTCGATCCGGCTGGGGCTTAG
128 CTACCACAACCCTCGATCCGGAT---GATTAA
* * * *
10249082 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GCGTGCGGG-GCTCAGCC-G-A
1 ACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCC
* ** *
10249143 G-AGAGGCAGAATGCACAAGCC-GGGATTGGCCCGGT-CC-CCCTGCGTGCTGTCGATCC
66 GAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCTGGTCCCTCCCTGCGTGCTGTCGATCC
10249199 TATCAACCCT
Statistics
Matches: 225, Mismatches: 41, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
151 16 0.07
152 4 0.02
153 13 0.06
154 134 0.60
155 3 0.01
156 1 0.00
157 4 0.02
158 9 0.04
159 40 0.18
160 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.19
Consensus pattern (156 bp):
ACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCC
GAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCTGGTCCCTCCCTGCGTGCTGTCGATCCCACTA
CCACAACCCTCGATCCGGATGATTAA
Found at i:10249253 original size:24 final size:24
Alignment explanation
Indices: 10249221--10249269 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 24
10249211 GTCCTTCGAT
10249221 CTTAGACTGGGAATGAACT-GTATG
1 CTTAGACTGGG-ATGAACTCGTATG
10249245 CTTAGACTGGGATGAACTCGTATG
1 CTTAGACTGGGATGAACTCGTATG
10249269 C
1 C
10249270 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 7 0.29
24 17 0.71
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (24 bp):
CTTAGACTGGGATGAACTCGTATG
Found at i:10250809 original size:26 final size:26
Alignment explanation
Indices: 10250773--10250828 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
10250763 CCAATCCAAT
10250773 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
10250799 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10250825 CTTA
1 CTTA
10250829 AGTCTACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10251877 original size:160 final size:159
Alignment explanation
Indices: 10251518--10252022 Score: 394
Period size: 160 Copynumber: 3.2 Consensus size: 159
10251508 AACTCCGTAT
* * *
10251518 GCTTAGACATGGAATGAACT-CTGTATGCCTAAGCCAAACCATGAAACGAGCATGCGGGCGCTTA
1 GCTTAGACATGGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTGA
* * * * * *
10251582 GCCAGCCAGAGAGGTAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCCTACGTGGTGCTGAT
65 GCCAGCCAAAGAGGCAGAATGCACAAGCCGAGGACCGGCCCGATCCCCCCCTACGTGCTACCGAT
* * *** *
10251647 CCTACTGCTGTAACCCTCGGTCTGGTCCAA
130 CCCACTACCACAACCCTCGGTCCGGTCCAA
* * * * * * *
10251677 TCTTAGAC-TAGCAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCATGTGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTGA
* * * * ** *
10251741 GCC-GACCAAAGAGGCATAATGCGCAAGCTGGGGACCGGCCCCGATCCCCCTTTGCGTGCTACCG
65 GCCAG-CCAAAGAGGCAGAATGCACAAGCCGAGGACCGG-CCCGATCCCCCCCTACGTGCTACCG
* ***
10251805 GTCCCACTACCACAACCCTCGGTCCGG-CTGGG
128 ATCCCACTACCACAACCCTCGGTCCGGTC-CAA
* * * *
10251837 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTGAG
* * ** * * * * ***
10251902 CCAGTCGAAA-AGGCAGAATACGTAAGCCGGGGATCGGCCCGGT-CCCCCCTGCGTGCTGTTGAT
66 CCAG-CCAAAGAGGCAGAATGCACAAGCCGAGGACCGGCCCGATCCCCCCCTACGTGCTACCGAT
** ** * *
10251965 CCTGCTGTCGCAACCCTCGGTCCGGTCCAC
130 CCCACTACCACAACCCTCGGTCCGGTCCAA
* *
10251995 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCTTATGC
10252023 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 68, Indels: 19
0.76 0.19 0.05
Matches are distributed among these distances:
157 1 0.00
158 60 0.22
159 86 0.32
160 116 0.43
161 6 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTGAG
CCAGCCAAAGAGGCAGAATGCACAAGCCGAGGACCGGCCCGATCCCCCCCTACGTGCTACCGATC
CCACTACCACAACCCTCGGTCCGGTCCAA
Found at i:10252736 original size:159 final size:158
Alignment explanation
Indices: 10252388--10252826 Score: 421
Period size: 159 Copynumber: 2.8 Consensus size: 158
10252378 AACTCCATAT
* *
10252388 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAACGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAACGCTCAA
* * * * **
10252453 CCAACTGGAGAGGCAGAAAGCACAAGCCAGGGATCGGTCCGGTCCCCCCTGTGTGCTGTCAATCC
66 CCAACCGGAGAGGCACAAAGCACAAGCCAGGGATCGGCCCGATCCCCCCTCCGTGCTGTCAATCC
* * *
10252518 TACTATCGCAACCGTCAGTCTGATTCGA
131 TACTACCACAACCCTCAGTCTGATTCGA
* * * * * ** *
10252546 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGCGCGTGTGAGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAACGCTCA
** * * * **
10252610 ACGGACCGGAGAGGCACAATGCGCAAGCCAGGGATTGGCCCGATCCCCCTCTCCGTGCTGTCGGT
65 ACCAACCGGAGAGGCACAAAGCACAAGCCAGGGATCGGCCCGATCCCCC-CTCCGTGCTGTCAAT
* * * * * *
10252675 CCTGCTGCCATAACCCTCAGTCTGGTTGGG
129 CCTACTACCACAACCCTCAGTCTGATTCGA
* * ** *
10252705 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCCCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAACGCTCAA
*** * * * * * * * *
10252770 CCGGTCGGAGAGGTAGAATGCACAAGTCGGGGATCGGCCCGGTGCCCCCTACGTGCT
66 CCAACCGGAGAGGCACAAAGCACAAGCCAGGGATCGGCCCGATCCCCCCTCCGTGCT
10252827 ACCGATCTTG
Statistics
Matches: 224, Mismatches: 54, Indels: 6
0.79 0.19 0.02
Matches are distributed among these distances:
157 1 0.00
158 100 0.45
159 122 0.54
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAACGCTCAA
CCAACCGGAGAGGCACAAAGCACAAGCCAGGGATCGGCCCGATCCCCCCTCCGTGCTGTCAATCC
TACTACCACAACCCTCAGTCTGATTCGA
Found at i:10252892 original size:31 final size:26
Alignment explanation
Indices: 10252828--10252885 Score: 116
Period size: 26 Copynumber: 2.2 Consensus size: 26
10252818 CTACGTGCTA
10252828 CCGATCTTGCTACCGCAACCCTCGGT
1 CCGATCTTGCTACCGCAACCCTCGGT
10252854 CCGATCTTGCTACCGCAACCCTCGGT
1 CCGATCTTGCTACCGCAACCCTCGGT
10252880 CCGATC
1 CCGATC
10252886 CGATCTTAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.16, C:0.43, G:0.19, T:0.22
Consensus pattern (26 bp):
CCGATCTTGCTACCGCAACCCTCGGT
Found at i:10253923 original size:159 final size:159
Alignment explanation
Indices: 10253603--10253945 Score: 411
Period size: 159 Copynumber: 2.2 Consensus size: 159
10253593 CTCAAAATCA
* * *
10253603 TAGACTGAGAATGAACTCCGTATGCCTAAGCTAACCCACAAAACGAGCGTATGGGCGCTCAACCG
1 TAGACTGGGAAAGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTATGGGCGCTCAACCG
* * * * *
10253668 ATCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCTCGGTCCCTTTCGGCGTGCTGCCGGTCCTG
66 ACCGGAGAGGCAAAATGCGCAAGCCGAGGATCAGCCCGGTCCCTTCCGGCGTGCTGCCGATCCTG
* ** *
10253733 CTGCCACAACCCTCGGTCCGGTTGGGGCT
131 CTGCCACAACCCTCGGTCCAGTCCGAGCT
* * * * **
10253762 TAGACAT-GGAAAGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTATGGGCGCTCAGTC
1 TAGAC-TGGGAAAGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTATGGGCGCTCAACC
* * * *
10253826 GGCCGGAGAGGCAAAATGCGCAAGCCGGAGGATCGGCCCGGTCCC-TCCTGCGTGCTGTCGATCC
65 GACCGGAGAGGCAAAATGCGCAAGCC-GAGGATCAGCCCGGTCCCTTCCGGCGTGCTGCCGATCC
* * * *
10253890 TGCTGTCGCAACCCTTGGTCCAGTCCGATCT
129 TGCTGCCACAACCCTCGGTCCAGTCCGAGCT
*
10253921 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAAAGAACTCCGTATGC
10253946 TTAGACTGGG
Statistics
Matches: 153, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
158 1 0.01
159 135 0.88
160 17 0.11
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (159 bp):
TAGACTGGGAAAGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTATGGGCGCTCAACCG
ACCGGAGAGGCAAAATGCGCAAGCCGAGGATCAGCCCGGTCCCTTCCGGCGTGCTGCCGATCCTG
CTGCCACAACCCTCGGTCCAGTCCGAGCT
Found at i:10253948 original size:26 final size:26
Alignment explanation
Indices: 10253919--10253970 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
10253909 CCAGTCCGAT
10253919 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10253945 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10253971 ACAAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10254315 original size:26 final size:26
Alignment explanation
Indices: 10254286--10254338 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10254276 CCGGTCCGAT
10254286 CTTAGACTCGG-AATGAACTCCGCATG
1 CTTAGACT-GGCAATGAACTCCGCATG
*
10254312 CTTAGACTGGCGATGAACTCCGCATG
1 CTTAGACTGGCAATGAACTCCGCATG
10254338 C
1 C
10254339 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.23
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGCATG
Found at i:10254518 original size:197 final size:194
Alignment explanation
Indices: 10254115--10254822 Score: 728
Period size: 197 Copynumber: 3.7 Consensus size: 194
10254105 TCTGACTGGG
* * * * *
10254115 GCTTAGACAT-GGAATGATCTCCGTATGTCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCT
1 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
10254179 GCCGGT-GGAAGAGGTAAAATGCGCAAGTCGGGGCTCAGCCTGGTCCCCC-CTGCATGCTACCGA
65 GCCGGTCGG-GGAGGCATAATGCGCAAGGCGGGGATCAGCCCGGTCCCCCTTTGCATGCTACCGA
* * * * * * *
10254242 TCCTGTTGCTAGTCTTGCTACCACAACCGTCAGTCCGGTCCGATCTTAGACTCGGAATGAACTCC
129 TCTTATT-CT-GTC-TGCTACCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTTC
*
10254307 GCAT
191 GTAT
* * * * *
10254311 GCTTAGACTGGCGATGAACTCCGCATGCCTAAGTCAACCCACAAAACAAGAGTGCGGGCGCTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
10254376 TCGGTCGGGGAGGCATAATGCGCAAGGCGGGGATTAGCTCGGTCCCCCTTTGCATGCTACCGATC
66 CCGGTCGGGGAGGCATAATGCGCAAGGCGGGGATCAGCCCGGTCCCCCTTTGCATGCTACCGATC
* * *
10254441 TTATTACTGGTCCTGCTACCGTAACCCCCAGTCCAGTCTGATCTTAGACTGGGAATGAACTTCGT
131 TTATT-CT-GT-CTGCTACCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGT
10254506 AT
193 AT
* * *
10254508 GCTAAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** * *
10254573 CCGATCGGGGCGAC-TGAATAAGCAA-GCTGGGGATCGGCCCGGTCCCCCCTGTG--TGCT---G
66 CCGGTCGGGGAGGCAT-AATGCGCAAGGC-GGGGATCAGCCCGGT-CCCCCTTTGCATGCTACCG
* * * * *
10254631 -TC-GA-TC--T-TGCTATCGCAACCCTCGGTCCAGTCCGATCTTAGACTGAGAATGAACTTTGT
128 ATCTTATTCTGTCTGCTACCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGT
10254690 AT
193 AT
* *
10254692 GCTTAGACTGGGGAAGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
10254757 CCGGTCGGGGAGGCATAATGTGCAAGCCGGGGATTAGCCCGGTCCCCCTTTGCGTGCTGCCGATC
66 CCGGTCGGGGAGGCATAATGCGCAAGGCGGGGATCAGCCCGGTCCCCCTTTGCATGCTACCGATC
10254822 T
131 T
10254823 CGCTACCAGT
Statistics
Matches: 423, Mismatches: 73, Indels: 38
0.79 0.14 0.07
Matches are distributed among these distances:
183 8 0.02
184 138 0.33
185 6 0.01
186 1 0.00
188 1 0.00
189 3 0.01
190 1 0.00
191 1 0.00
192 2 0.00
193 1 0.00
195 1 0.00
196 96 0.23
197 155 0.37
198 9 0.02
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (194 bp):
GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGGGAGGCATAATGCGCAAGGCGGGGATCAGCCCGGTCCCCCTTTGCATGCTACCGATC
TTATTCTGTCTGCTACCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTAT
Found at i:10254524 original size:26 final size:27
Alignment explanation
Indices: 10254486--10254540 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 27
10254476 GTCTGATCTT
10254486 AGACTGGGAATGAACTTCGTATG-CTA
1 AGACTGGGAATGAACTTCGTATGCCTA
*
10254512 AGACTGGGGATGAACTTCGTATGCCTA
1 AGACTGGGAATGAACTTCGTATGCCTA
10254539 AG
1 AG
10254541 TCAACCCACG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (27 bp):
AGACTGGGAATGAACTTCGTATGCCTA
Found at i:10254799 original size:184 final size:185
Alignment explanation
Indices: 10254471--10254827 Score: 511
Period size: 184 Copynumber: 1.9 Consensus size: 185
10254461 GTAACCCCCA
* * * *
10254471 GTCCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTAAGACTGGGGATGAACTTCGTATGC
1 GTCCAGTCCGATCTTAGACTGAGAATGAACTTCGTATGCTAAGACTGGGGAAGAACTCCGTATGC
* * *
10254536 CTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGATCGGGGCGACTGAATAAGCAAGCT
66 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGGGAGACTGAATAAGCAAGCC
* * * *
10254601 GGGGATCGGCCCGGTCCCCC-CTGTGTGCTGTCGATCTTGCTATCGCAACCCTCG
131 GGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATCTCGCTATCGCAACCCTCG
* *
10254655 GTCCAGTCCGATCTTAGACTGAGAATGAACTTTGTATGCTTAGACTGGGGAAGAACTCCGTATGC
1 GTCCAGTCCGATCTTAGACTGAGAATGAACTTCGTATGCTAAGACTGGGGAAGAACTCCGTATGC
* * * **
10254720 CTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGGGAGGCAT-AATGTGCAAGC
66 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGGGAGAC-TGAATAAGCAAGC
* *
10254784 CGGGGATTAGCCCGGTCCCCCTTTGCGTGCTGCCGATCTCGCTA
130 CGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATCTCGCTA
10254828 CCAGTCTTGC
Statistics
Matches: 151, Mismatches: 20, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
184 132 0.87
185 19 0.13
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (185 bp):
GTCCAGTCCGATCTTAGACTGAGAATGAACTTCGTATGCTAAGACTGGGGAAGAACTCCGTATGC
CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGGGAGACTGAATAAGCAAGCC
GGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATCTCGCTATCGCAACCCTCG
Found at i:10255066 original size:169 final size:171
Alignment explanation
Indices: 10254692--10255099 Score: 441
Period size: 169 Copynumber: 2.4 Consensus size: 171
10254682 AACTTTGTAT
*
10254692 GCTTAGACTGGGGAA-GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
** ** * * * * * *
10254756 GCCGGTCGGGGAGGCATAATGTGCAAGCCGGGGATTAGCCCGGTCCCCCTTTGCGTGCTGCCGAT
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATTAGCCCAGTCCCCCTCTACGTGCTGCCGAT
* * * * * *
10254821 CTCGCTACCAGTCTTGCTACCACAATCCTCGGTCCGGCTGGG
130 CTCACTACCAGTCCTACTACCACAACCCTCGGTCCGGCTCGA
*
10254863 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * *
10254927 GCTGACCGAAGAGGCAGAATGCGCAAGCCAGGGA-TCGCCCAGTCCCCC-CTACGTGCTGTCGAT
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATTAGCCCAGTCCCCCTCTACGTGCTGCCGAT
* ** * *
10254990 ACT-ACTGCTGGTCCTACTACCACAACCCTCGGT-CTGATCCGA
130 -CTCACTACCAGTCCTACTACCACAACCCTCGGTCCGGCT-CGA
* ** * * * *
10255032 TCTTAGACTGGGAATGAACTCTTTATACCTAAGCCAACCCATGAAACGGGCGTGCCGGCACTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
10255097 CCG
66 CCG
10255100 GTCGGACAGA
Statistics
Matches: 197, Mismatches: 35, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
168 4 0.02
169 93 0.47
170 18 0.09
171 81 0.41
172 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.19
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATTAGCCCAGTCCCCCTCTACGTGCTGCCGATC
TCACTACCAGTCCTACTACCACAACCCTCGGTCCGGCTCGA
Found at i:10255301 original size:158 final size:159
Alignment explanation
Indices: 10255026--10255320 Score: 351
Period size: 158 Copynumber: 1.9 Consensus size: 159
10255016 CCTCGGTCTG
* ** * *
10255026 ATCCGATCTTAGACTGGGAATGAACTCTTTATACCTAAGCCAACCCATGAAACGGGCGTGCCGGC
1 ATCCGATCTTAGACTGGGAATGAACTCTGTATACCTAAGCCAACCCACAAAACGAGCGTACCGGC
* * *
10255091 ACTCAGCCGGTCGGACAGACGGAATGCGCAAGCCGCGGATCAACCCCATCCCCC-CTGCGTGCTA
66 ACTCAGCCGGCCGGACAGACAGAATGCGCAAGCCGCGGATCAACCCCATCCCCCTCTGCATGCTA
10255155 TCGATCCTGTTGCTGCAACCTTCAGTCCA
131 TCGATCCTGTTGCTGCAACCTTCAGTCCA
* * * * *
10255184 ATCCGATCTTAGACTGGGTATGAACT-TCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGG
1 ATCCGATCTTAGACTGGGAATGAACTCT-GTATACCTAAGCCAACCCACAAAACGAGCGTACCGG
* * * * * ** * * **
10255248 CGCTGAGCCGGCCGGAGAGGCATAATGCGCAAGTTGGGGATCGACCCGGTCCCCCTCTGCATGCT
65 CACTCAGCCGGCCGGACAGACAGAATGCGCAAGCCGCGGATCAACCCCATCCCCCTCTGCATGCT
10255313 ATCGATCC
130 ATCGATCC
10255321 CGCTACCACA
Statistics
Matches: 111, Mismatches: 24, Indels: 3
0.80 0.17 0.02
Matches are distributed among these distances:
157 1 0.01
158 94 0.85
159 16 0.14
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.20
Consensus pattern (159 bp):
ATCCGATCTTAGACTGGGAATGAACTCTGTATACCTAAGCCAACCCACAAAACGAGCGTACCGGC
ACTCAGCCGGCCGGACAGACAGAATGCGCAAGCCGCGGATCAACCCCATCCCCCTCTGCATGCTA
TCGATCCTGTTGCTGCAACCTTCAGTCCA
Found at i:10255380 original size:159 final size:158
Alignment explanation
Indices: 10255203--10255494 Score: 368
Period size: 159 Copynumber: 1.8 Consensus size: 158
10255193 TAGACTGGGT
* * * * * * * *
10255203 ATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCGCTGAGCCGGCCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCAACAAAACGAGCGTACGGGCGCTAAACCGGCCGAAGAGG
* ** * *
10255268 CATAATGCGCAAGTTGGGGATCGACCCGGTCCCCCTCTGCATGCTATCGATCCCGCTACCACAAC
66 CAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTGCATGCTACCGATCCCACTACCACAAC
10255333 CCTCGGTCTGGCTGGGGCTTAGATATGGA
130 CCTCGGTCTGGCTGGGGCTTAGATATGGA
** * *
10255362 ATGAACTCCCTATGCCTAAGCCAACCAATGAAACGGGCGTACGGGCGCTAAACCGGTCGAAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCAACAAAACGAGCGTACGGGCGCTAAACCGGCCGAAGAGG
* ** * * *
10255427 CAGAATGTGCAAGCCGGGGATCGGTCCGGTCCCCCCTGCGTGCTACCGATCCTACTGCCACAACC
66 CAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTACCGATCCCACTACCACAACC
10255492 CTC
131 CTC
10255495 AATCCGGTCC
Statistics
Matches: 110, Mismatches: 23, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
158 28 0.25
159 82 0.75
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (158 bp):
ATGAACTCCCTATGCCTAAGCCAACCAACAAAACGAGCGTACGGGCGCTAAACCGGCCGAAGAGG
CAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTACCGATCCCACTACCACAACC
CTCGGTCTGGCTGGGGCTTAGATATGGA
Found at i:10255549 original size:26 final size:26
Alignment explanation
Indices: 10255508--10255560 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10255498 CCGGTCCGAT
*
10255508 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
10255534 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
10255560 C
1 C
10255561 CTAAGTCCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10256281 original size:26 final size:26
Alignment explanation
Indices: 10256243--10256295 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10256233 GGCTCAAAAT
10256243 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10256269 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10256295 C
1 C
10256296 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10257493 original size:26 final size:26
Alignment explanation
Indices: 10257455--10257507 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10257445 GGCTCAAAAT
10257455 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10257481 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10257507 C
1 C
10257508 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10257961 original size:25 final size:26
Alignment explanation
Indices: 10257933--10257984 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10257923 CGGATCCGAT
10257933 CTTAGACA-AGAATGAACTTCGTATG
1 CTTAGACATAGAATGAACTTCGTATG
*
10257958 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATAGAATGAACTTCGTATG
10257984 C
1 C
10257985 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACATAGAATGAACTTCGTATG
Found at i:10258252 original size:159 final size:159
Alignment explanation
Indices: 10257957--10258380 Score: 386
Period size: 159 Copynumber: 2.7 Consensus size: 159
10257947 AACTTCGTAT
* * * * * * *
10257957 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAG
* * ** * * * * * ** * * *
10258022 CCGGCCGGAGAGGCAGAATGCACAAGCTGGGGA-CTGACCCTGTCCCCCCCTGCGTGCTGTCGGT
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAAGATC-GGCTCGGTTCCCCTCTATGTGTTGCCGAT
* * * * * *
10258086 CCTGCTGCCGCAATCCTCGATTC-GATCCAA
130 CCCGCTGCCACAACCCTCAATCCGGCT-CAA
* * * * *
10258116 TCTTAGAC-TGGGAATGAACTCCATGTGCCTAAGTCAACCCACGGAACGAACGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCA
* * * **
10258180 GCTGGGCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTTCCCCTCTATGTGTTGCCGAT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGAAGATCGGCTCGGTTCCCCTCTATGTGTTGCCGAT
* ***
10258245 CCCGCTGCCATAACCCTCAATCCGGCTGGG
130 CCCGCTGCCACAACCCTCAATCCGGCTCAA
* **
10258275 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAG
* *
10258340 CCGGCCGGAGAGGTAGAATGCGCAAGTCGAAGATCGGCTCG
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAAGATCGGCTCG
10258381 ATCCCCTTGC
Statistics
Matches: 209, Mismatches: 52, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
158 1 0.00
159 204 0.98
160 4 0.02
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGAAGATCGGCTCGGTTCCCCTCTATGTGTTGCCGATC
CCGCTGCCACAACCCTCAATCCGGCTCAA
Found at i:10258462 original size:26 final size:26
Alignment explanation
Indices: 10258433--10258485 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10258423 CCAGTCCGAT
10258433 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
10258459 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10258485 C
1 C
10258486 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10259647 original size:25 final size:26
Alignment explanation
Indices: 10259599--10259650 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
10259589 CCAGTCCAAT
* *
10259599 CTTAGGCTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10259625 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10259650 C
1 C
10259651 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10260497 original size:26 final size:26
Alignment explanation
Indices: 10260468--10260520 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10260458 CCGATCCGAT
*
10260468 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCCTATG
10260494 CTTAGACATGGAATGAACTCCCTATG
1 CTTAGACATGGAATGAACTCCCTATG
10260520 C
1 C
10260521 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCCTATG
Found at i:10260655 original size:172 final size:172
Alignment explanation
Indices: 10260457--10260766 Score: 476
Period size: 172 Copynumber: 1.8 Consensus size: 172
10260447 CAACCCTCGA
*
10260457 TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCCTATGCC
1 TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCC
* * * * *
10260522 TAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGTAGAATGCGTAAACCG
66 TAAGCCAACCCACAAAACAAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAACCG
10260587 AGGATCGACCTGGTCCCCCTTGCATGCTACTGCAACCCTTAG
131 AGGATCGACCTGGTCCCCCTTGCATGCTACTGCAACCCTTAG
* * * *
10260629 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGGGATGAACTCCATATTCC
1 TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCC
* * * * *
10260694 TAAGTCAACCCACGAAACAAGCGTGCGGGCGCTTAGCCGACCAGAGAGGCAGGATGCGCAAGCCG
66 TAAGCCAACCCACAAAACAAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAACCG
*
10260759 GGGATCGA
131 AGGATCGA
10260767 ACGGGTGTTA
Statistics
Matches: 122, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
172 122 1.00
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.19
Consensus pattern (172 bp):
TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCC
TAAGCCAACCCACAAAACAAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAACCG
AGGATCGACCTGGTCCCCCTTGCATGCTACTGCAACCCTTAG
Found at i:10261399 original size:26 final size:26
Alignment explanation
Indices: 10261361--10261413 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10261351 GGCTCAAAAT
*
10261361 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10261387 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10261413 C
1 C
10261414 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10261722 original size:159 final size:158
Alignment explanation
Indices: 10261386--10261748 Score: 362
Period size: 158 Copynumber: 2.3 Consensus size: 158
10261376 AACTTCGTAT
* * * *
10261386 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTATGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCATAAGCCAACCCATGAAACGAGCGTACGGGAGCTCAG
* * * * * * *
10261451 CAGGCCGGAGAGGCAGAATGTGAAAGTCGAGGATCGACCTGATCCCGCCTGCATGCTGTCGATCC
66 CAGGCCGAAAAGGCAGAATGCGAAAGCCGAGGATCGACCAGATCCCCCCTGCATGCTGGCGATCC
** * *
10261516 TGCTACCGCAACCCTCAGTCTGGTCTGT
131 CACTACCACAACCCTCAGTCTGGTCTGG
* * * *
10261544 TCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGTAG-TG
1 GCTTAGACAT-GGAATGAACTCTGTATGCATAAGCCAACCCATGAAACGAGCGTACGGG-AGCTC
* * * * *
10261607 AGCTA-GCCGAAAAGGCATAATGCGCAAGCCGGGGATCAGCCCAG-TCCCCCTCTGCGTGCTGGC
64 AGC-AGGCCGAAAAGGCAGAATGCGAAAGCCGAGGATC-GACCAGATCCCCC-CTGCATGCTGGC
* * *
10261670 GATCCCATTGCCACAACCCTCGGTCTGG-CTGGG
126 GATCCCACTACCACAACCCTCAGTCTGGTCT-GG
10261703 GCTTAGACATGGAATGAACTCCT-TATGCGA-AAGCCAACCCATGAAA
1 GCTTAGACATGGAATGAACT-CTGTATGC-ATAAGCCAACCCATGAAA
10261749 TAGGCGTGAG
Statistics
Matches: 166, Mismatches: 30, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
157 1 0.01
158 86 0.52
159 75 0.45
160 4 0.02
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCATAAGCCAACCCATGAAACGAGCGTACGGGAGCTCAG
CAGGCCGAAAAGGCAGAATGCGAAAGCCGAGGATCGACCAGATCCCCCCTGCATGCTGGCGATCC
CACTACCACAACCCTCAGTCTGGTCTGG
Found at i:10261898 original size:26 final size:26
Alignment explanation
Indices: 10261862--10261912 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
10261852 CTGGATCGAT
*
10261862 CTTAGGCTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
10261888 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
10261913 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:10262224 original size:26 final size:26
Alignment explanation
Indices: 10262186--10262238 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10262176 CCTGTCCGAT
*
10262186 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10262212 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10262238 C
1 C
10262239 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10262640 original size:159 final size:159
Alignment explanation
Indices: 10262211--10262659 Score: 490
Period size: 159 Copynumber: 2.8 Consensus size: 159
10262201 AACTTCGTAT
* * *
10262211 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** *
10262276 CCGGCCAGAGAGGTAGAATGCACAATTCGGGGATCGGCCCGGTCCCCACCTACGTGCTATCGATC
66 CCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCC-CCTACGTGCTACCGATC
* * *
10262341 CTACTACCACAATCCTCGGTCCGGTCTGAT
130 CTACTACCAAAACCCTCGGTCCGGTCTGAG
* * ** * *
10262371 G-TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGCGTGCGATCACTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
10262434 GCCGGTCGGAAAGGCATAAAGCACAAGCCGAGGATCGGCCCGATCCCCCTCTACGTGCTACCGAT
65 GCCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCC-CTACGTGCTACCGAT
* * *
10262499 CTTGCTACCAAAACCCTCGGTCCGG-CTGGG
129 CCTACTACCAAAACCCTCGGTCCGGTCTGAG
* * ** * *
10262529 GCTTTGACATGGAATGAGCTCCCAATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
10262594 TCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCCTGCATGTTACCGATCC
66 CCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTACCGATCC
10262659 T
131 T
10262660 GCTGTCGTAA
Statistics
Matches: 232, Mismatches: 53, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
158 20 0.09
159 210 0.91
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTACCGATCC
TACTACCAAAACCCTCGGTCCGGTCTGAG
Found at i:10264022 original size:314 final size:317
Alignment explanation
Indices: 10263584--10264191 Score: 803
Period size: 314 Copynumber: 1.9 Consensus size: 317
10263574 GTCCGATTCA
* *
10263584 ATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCTCGAAACGAGTGTGCAGGAGCTGA
1 ATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCTCGAAACCAGTGTGCAGGAGCTCA
** * * * *
10263649 GCCAGCCAAAGAGGCATAATACGCAAGTCGGGGACCGGCCCGGTCCCCCTCAGTGTGCTGCCGGT
66 GCCAGCCAAAGAGGCATAATACGCAAGTCAAGGACCAGCCCGATCCCCCTCAGTGTGCTGCAGAT
* *
10263714 CCCGCTGCCACAACCCTCGGTC-CACTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCC
131 CCCGCTACCACAACCCTCGGTCTCACTGGGGCTTAGACAAGAAATGAACTCCCTATGCCTAAGCC
* * * * ** *
10263778 AACCCATGAAATGGGCGTAC-GGTGCTCAG-CGACCGGAGAGATAGAATGCGCAAGTCAGGGATC
196 AACCCACGAAACGAGCGTACGGGTGCTCAGCCGACCGGAGAGACAGAAAACGCAAGTAAGGGATC
*
10263841 AGCTCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCACAACCCTTGGTTCGGTCTG
261 AGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCACAACCCTTGGTTCGGTCTG
* * * * * *
10263898 ATCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA-CCTACGGAACCAGTGTGCGGGTGCTC
1 ATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCT-CGAAACCAGTGTGCAGGAGCTC
** * * * * * *
10263962 AGCCAGCCGGAGAGGTATAATACGTAAGTCAAGGATCAGCTCGATCCCCTTCTA-TGTGCTGTAG
65 AGCCAGCCAAAGAGGCATAATACGCAAGTCAAGGACCAGCCCGATCCCCCTC-AGTGTGCTGCAG
* * * *
10264026 ATCCTGCTACCACAACCCTCGGTCTGACTGGGGCTTAGACAAGGAATGAACTCCGTATGCCTAAG
129 ATCCCGCTACCACAACCCTCGGTCTCACTGGGGCTTAGACAAGAAATGAACTCCCTATGCCTAAG
* * * *
10264091 CCAACCCACGTAACGAGCGTACGGGTGGTCAGCCGGCCGGAGAGGCAGAAAACGCAAGTAAGGGA
194 CCAACCCACGAAACGAGCGTACGGGTGCTCAGCCGACCGGAGAGACAGAAAACGCAAGTAAGGGA
10264156 TCAGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCT
259 TCAGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCT
10264192 ACTGGTCCTG
Statistics
Matches: 249, Mismatches: 40, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
313 3 0.01
314 122 0.49
315 55 0.22
316 8 0.03
317 61 0.24
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (317 bp):
ATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCTCGAAACCAGTGTGCAGGAGCTCA
GCCAGCCAAAGAGGCATAATACGCAAGTCAAGGACCAGCCCGATCCCCCTCAGTGTGCTGCAGAT
CCCGCTACCACAACCCTCGGTCTCACTGGGGCTTAGACAAGAAATGAACTCCCTATGCCTAAGCC
AACCCACGAAACGAGCGTACGGGTGCTCAGCCGACCGGAGAGACAGAAAACGCAAGTAAGGGATC
AGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCACAACCCTTGGTTCGGTCTG
Found at i:10264063 original size:159 final size:157
Alignment explanation
Indices: 10263586--10264191 Score: 565
Period size: 159 Copynumber: 3.8 Consensus size: 157
10263576 CCGATTCAAT
* * * * * * * * *
10263586 CTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCTCGAAACGAGTGTGCAGGAGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGC
** * * * * * *
10263651 CAGCCAAAGAGGCATAATACGCAAGTCGGGGACCGGCCCGGTCCCC-CTCAGTGTGCTGCCGGTC
66 CAGCCGGAGAGGTATAATACGCAAGTCAGGGATCAGCTCGGTCCCCTCT-A-TGTGCTGCCGATC
* *
10263715 CCGCTGCCACAACCCTCGGTCCACTGGGG
129 CTGCTGCCACAACCCTCGGTCGACTGGGG
* * * * *
10263744 CTTAGACAT-GAAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTAC-GGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
* * * * * **
10263807 CGA-CCGGAGAGATAGAATGCGCAAGTCAGGGATCAGCTCGGTCCCCCCTGCGTGCTGCCGATCC
65 CCAGCCGGAGAGGTATAATACGCAAGTCAGGGATCAGCTCGGTCCCCTCTATGTGCTGCCGATCC
* * **
10263871 TGCTGCCACAACCCTTGGTTCGGTCT-GAT
130 TGCTGCCACAACCCTCGG-TC-GACTGGGG
* * * * * * *
10263900 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCTACGGAACCAGTGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGC
* * * **
10263965 CAGCCGGAGAGGTATAATACGTAAGTCAAGGATCAGCTCGATCCCCTTCTATGTGCTGTAGATCC
66 CAGCCGGAGAGGTATAATACGCAAGTCAGGGATCAGCTCGGTCCCC-TCTATGTGCTGCCGATCC
*
10264030 TGCTACCACAACCCTCGGTCTGACTGGGG
130 TGCTGCCACAACCCTCGGTC-GACTGGGG
** * *
10264059 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGTAACGAGCGTACGGGTGGTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGC
* * * * * * * **
10264124 CGGCCGGAGAGGCAGAAAACGCAAGTAAGGGATCAGCCCGGTCCCCCCTGCGTGCTGCCGATCCT
66 CAGCCGGAGAGGTATAATACGCAAGTCAGGGATCAGCTCGGTCCCCTCTATGTGCTGCCGATCCT
10264189 GCT
131 GCT
10264192 ACTGGTCCTG
Statistics
Matches: 353, Mismatches: 86, Indels: 18
0.77 0.19 0.04
Matches are distributed among these distances:
155 29 0.08
156 76 0.22
157 24 0.07
158 101 0.29
159 123 0.35
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGC
CAGCCGGAGAGGTATAATACGCAAGTCAGGGATCAGCTCGGTCCCCTCTATGTGCTGCCGATCCT
GCTGCCACAACCCTCGGTCGACTGGGG
Found at i:10264258 original size:26 final size:26
Alignment explanation
Indices: 10264229--10264281 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10264219 CCGGTCCGAT
10264229 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
10264255 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10264281 C
1 C
10264282 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10264924 original size:26 final size:26
Alignment explanation
Indices: 10264895--10264947 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10264885 CACTCAAAAT
*
10264895 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
10264921 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10264947 C
1 C
10264948 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10265423 original size:158 final size:158
Alignment explanation
Indices: 10264921--10265423 Score: 507
Period size: 159 Copynumber: 3.2 Consensus size: 158
10264911 ACTCTGTATG
* * *
10264921 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTACGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCGGC
* * * * ***
10264986 CGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCCGACGTGCTATTGATCC
66 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTG-CGTGCTGCCGATCC
* * *
10265051 TGCTGCTGCAACCCTTGGTCCGGTCTGAT
130 TGCTGCCGCAACCCTCGATCCGGTCTGAT
* * * *
10265080 CTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCT-GA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCG-
* * * ** *
10265143 GCAC-GCCGAAGAGGCATAATGCGCAAGCCGGGGATCATCCCGGTCCCCCTCTGCGTGCTGCCGG
64 GC-CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCTCTGCGTGCTGCCGA
* * * **
10265207 TCCCGCTGCCACAACCCTCGATCCGAT-TGGGG
127 TCCTGCTGCCGCAACCCTCGATCCGGTCT-GAT
* * *
10265239 CTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACGAAAC-AGGCGTACGGGCACTCGG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTACGGGCGCTCGG
* * * * * *
10265303 CCGGTCGGAGAGGCAGAATGTGTAAGACGGGGATTGGCCCGATCCCCTTTGCGTGCTGCCGATCC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGCCGATCC
* * * *
10265368 T-ATCACCGTAACCCTCGATCTGGTCTGAT
130 TGCT-GCCGCAACCCTCGATCCGGTCTGAT
10265397 CTTAGAC-TGAGAATGAACTCCGTATGC
1 CTTAGACATG-GAATGAACTCCGTATGC
10265424 TTAGATCGGG
Statistics
Matches: 275, Mismatches: 57, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
157 3 0.01
158 63 0.23
159 200 0.73
160 9 0.03
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCGGC
CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGCCGATCCT
GCTGCCGCAACCCTCGATCCGGTCTGAT
Done.