Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 54 of 402
Found at i:10265991 original size:26 final size:26
Alignment explanation
Indices: 10265953--10266005 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10265943 GGTTCAAAAT
*
10265953 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTACGTATG
10265979 CTTAGA-TATGGAATGAACTACGTATG
1 CTTAGACTA-GGAATGAACTACGTATG
10266005 C
1 C
10266006 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACGTATG
Found at i:10266260 original size:183 final size:185
Alignment explanation
Indices: 10265951--10266347 Score: 485
Period size: 183 Copynumber: 2.2 Consensus size: 185
10265941 GTGGTTCAAA
* * *
10265951 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGATATGGAATGAACTACGTATGCCTAAGCCAAC
1 ATCTTAGACTTGGAATGAACTCCGTATGCTTAGATAGGGAATGAACTACGTACGCCTAAGCCAAC
* * * * * *
10266016 CTACGCAACGAGCGTGCAAGCGCTCAGTCGATCGGAGAGGCAGAATGTGCAAGCCAGGGATCGAC
66 CCACGAAACGAGCGTGCAAGCGCTCAGTCAACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGAC
* * * * * * *
10266081 CCGGTCCCCC-CTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTTTG
131 CCAGTCCCCCTCTGCATGCTGTCGATCCCGCTACCACAACCCTCGGTCCGGCTGG
* * *
10266135 ATCTTAGACTTGGAATGAACTCC-TATGCTTAGACT-GGGGATGAACTCCGTACGCCTAAGTCAA
1 ATCTTAGACTTGGAATGAACTCCGTATGCTTAGA-TAGGGAATGAACTACGTACGCCTAAGCCAA
*** * * *
10266198 CCCACGAAACGAGCGTGTGGGCGCTGAGTCAACCGAAGAGGCATAATGCGCAAGCCAGGGATCGG
65 CCCACGAAACGAGCGTGCAAGCGCTCAGTCAACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGA
* * *
10266263 CCCAGTCCCCCTCTGCATGTTGTCGGTCCCGCTACCACAACCCTCTGTCCGGCTGG
130 CCCAGTCCCCCTCTGCATGCTGTCGATCCCGCTACCACAACCCTCGGTCCGGCTGG
* * *
10266319 GTCTTAGACATGGAATGAACTCCTTATGC
1 ATCTTAGACTTGGAATGAACTCCGTATGC
10266348 CTAAACCAAC
Statistics
Matches: 180, Mismatches: 30, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
183 96 0.53
184 79 0.44
185 5 0.03
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (185 bp):
ATCTTAGACTTGGAATGAACTCCGTATGCTTAGATAGGGAATGAACTACGTACGCCTAAGCCAAC
CCACGAAACGAGCGTGCAAGCGCTCAGTCAACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGAC
CCAGTCCCCCTCTGCATGCTGTCGATCCCGCTACCACAACCCTCGGTCCGGCTGG
Found at i:10266591 original size:158 final size:158
Alignment explanation
Indices: 10266161--10266613 Score: 423
Period size: 159 Copynumber: 2.9 Consensus size: 158
10266151 GAACTCCTAT
* * * * * * *
10266161 GCTTAGAC-TGGGGATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCA
* * * * * *
10266225 GTCAACCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCC-AGTCCCCCTCTGCATGT-TGTCG
65 GCCGACCAAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGA-TCCCCC-CTACGT-TCTGTCG
* *
10266288 GTCCCGCTACCACAACCCTCTGTCCGGCTGGG
127 ATCCCGCTGCCACAACCCTCTGTCCGGCTGGG
* * * * ** *
10266320 TCTTAGACATGGAATGAACTCCTTATGCCTAAACCAACCCATGAAACGGGCACGCGGTCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * * * * * * *
10266385 CTG-GCATGAGAGGCAGAATGCACAA-ACTGAGGATCGGCCCGGTCCCCCCTACGTTCTGTCGAT
66 CCGACCA-AAGAGGCAAAATGCGCAAGCCAG-GGATCGGCCCGATCCCCCCTACGTTCTGTCGAT
*
10266448 CCCGCTGCCACAACCCTC-GATCCGGTTGGG
129 CCCGCTGCCACAACCCTCTG-TCCGGCTGGG
* * *
10266478 GCTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACCCACGAAACGGGCGTGCAGGGCACTTA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGC-GGGCGCTCA
* * * * * *
10266543 ACCGATCAAAAAGGCAAAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACATGCTGTCGATC
65 GCCGACCAAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTTCTGTCGATC
*
10266608 CTGCTG
130 CCGCTG
10266614 TCGTAACCCT
Statistics
Matches: 232, Mismatches: 53, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 87 0.38
159 138 0.59
160 5 0.02
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
CCGACCAAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTTCTGTCGATCC
CGCTGCCACAACCCTCTGTCCGGCTGGG
Found at i:10267520 original size:26 final size:26
Alignment explanation
Indices: 10267491--10267543 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10267481 CCGGTCTGAT
*
10267491 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10267517 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10267543 C
1 C
10267544 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10274348 original size:158 final size:157
Alignment explanation
Indices: 10273861--10274360 Score: 449
Period size: 158 Copynumber: 3.2 Consensus size: 157
10273851 ACTCTGTATG
*
10273861 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG-
** * * * ** * * * * *
10273926 CGGTCGGATAGGTAGAATGCGCAAGTCAAGGATCCACC-CGATTCCCCCTACGTGTTGTCGATCC
65 CGACCAGAGAGGTAGAATGCGCAAGCCGGGGATCGACCTAG-TCCCCCCTGCGTGCTGTCGATCC
* * *
10273990 TGCTGCCGCAACCCTCGGTCCGATCCGAT
129 TACTGCCACAACCCTCGGTCTGATCCGAT
* * * * * * **
10274019 CATAGACTTGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCGCTGGGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ** * *
10274084 CAGCTGAAGAGGCATAATGCGCAAGCCGGGGATCG-GTTCGGTCCCCCTCTGCGTGCTGTCGGTC
66 GACCAG-AGAGGTAGAATGCGCAAGCCGGGGATCGACCT-AGTCCCCC-CTGCGTGCTGTCGATC
* ** *
10274148 CTACTGCCACAA-CCTCAGT-TCGACTGGGGT
128 CTACTGCCACAACCCTCGGTCT-GA-TCCGAT
* * * * *
10274178 -TGAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-ACGCATGCGGGTGTTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTGCGGGCGCTCAG
* *
10274241 CTGACCAGAGAGGTAGAATACGCAACCCGGGGATCGACCTAGTCCCCCCTGCGTGCTGTCGATCC
65 C-GACCAGAGAGGTAGAATGCGCAAGCCGGGGATCGACCTAGTCCCCCCTGCGTGCTGTCGATCC
*
10274306 TACTGTCACAACCCTCGGTCTGATCCGAT
129 TACTGCCACAACCCTCGGTCTGATCCGAT
10274335 CTTAGAC-TGGGAATGAA-TCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
10274361 TTAGACTGTG
Statistics
Matches: 264, Mismatches: 65, Indels: 27
0.74 0.18 0.08
Matches are distributed among these distances:
157 42 0.16
158 190 0.72
159 32 0.12
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
GACCAGAGAGGTAGAATGCGCAAGCCGGGGATCGACCTAGTCCCCCCTGCGTGCTGTCGATCCTA
CTGCCACAACCCTCGGTCTGATCCGAT
Found at i:10274364 original size:25 final size:25
Alignment explanation
Indices: 10274328--10274386 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
10274318 CCTCGGTCTG
10274328 ATCCG-AT-CTTAGACTG-GGAATGA
1 ATCCGTATGCTTAGACTGTGG-ATGA
10274351 ATCCGTATGCTTAGACTGTGGATGA
1 ATCCGTATGCTTAGACTGTGGATGA
10274376 ACTCCGTATGC
1 A-TCCGTATGC
10274387 CTAAGTCAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
23 5 0.16
24 2 0.06
25 14 0.44
26 11 0.34
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (25 bp):
ATCCGTATGCTTAGACTGTGGATGA
Found at i:10275036 original size:159 final size:158
Alignment explanation
Indices: 10274740--10275180 Score: 428
Period size: 159 Copynumber: 2.8 Consensus size: 158
10274730 AACTCCGTAT
* * *
10274740 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGGGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
10274805 CCGACTGGAA-AAGCAGAATACGTAAGTCGAGAATC-AACTCGATCCCCCCATATG-TGCTATCG
66 CCGACT-GAAGAGGCAAAATACGCAAGTCGAGGATCGACCT-GAT-CCCCC-TCTGCTGCTGTCG
* *
10274867 ATCTTGCTGCC-GCAACCCTC-GATCCGATCCAT
127 ATCTTACTGCCAG-AACCCTCAG-TCCGATCCAG
* * * *
10274899 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
10274963 GCCGACTGAAGAGGCATAATGCGCAAGTCGAGGATCGGCCTGGTCCCCCTCTGCCTGCTGTCGGT
65 GCCGACTGAAGAGGCAAAATACGCAAGTCGAGGATCGACCTGATCCCCCTCTG-CTGCTGTCGAT
* ***
10275028 CTTACTGCCAGAACCCTCAGTCTGATTGGG
129 CTTACTGCCAGAACCCTCAGTCCGATCCAG
* * * * *
10275058 GCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACGGGCGTGCCGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * *
10275123 CCGGCCAAAGAGGCAAAATACGCAAGTCGGGGATCGCCCCGATCCCCC-CTGCGTGCTG
66 CCGACTGAAGAGGCAAAATACGCAAGTCGAGGATCGACCTGATCCCCCTCTGC-TGCTG
10275181 CTGATCCTGC
Statistics
Matches: 231, Mismatches: 42, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
157 4 0.02
158 17 0.07
159 205 0.89
160 5 0.02
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACTGAAGAGGCAAAATACGCAAGTCGAGGATCGACCTGATCCCCCTCTGCTGCTGTCGATCT
TACTGCCAGAACCCTCAGTCCGATCCAG
Found at i:10275253 original size:26 final size:26
Alignment explanation
Indices: 10275217--10275267 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
10275207 TTGGTCTGAC
10275217 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
10275243 CTTAGACTGGGGATGAACTTCGTAT
1 CTTAGACTGGGAATGAACTTCGTAT
10275268 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:10276251 original size:159 final size:158
Alignment explanation
Indices: 10275949--10276386 Score: 414
Period size: 159 Copynumber: 2.8 Consensus size: 158
10275939 AACTTCGTAT
* * * *
10275949 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * ** * * * ***
10276014 CCGGCCGGAGAGGCAGAATGCGTAAGCCGCGGATC-AGCCCGTTCCCCCCCTGCGTGCTGTCAAT
66 CCGACCGAAGAGGCAGAATGCGCAAGCCAAGGATCGA-CCCGGT-CCCCCCTGTGTGTTGTGGGT
** ** * * * *
10276078 CCTACTGTCGCAACCCTCGGTCCGGTTTGA
129 CCCGCTACCACAACCCTCGGTCCAGCTGGA
* * ** * *
10276108 TCTTAGAC-TGGGAATGAACTCCATATGTATAATTCAACCCACGAAATGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * *
10276172 GCCTACCGAAGAGGCATAATGCGCAAGCC-GGGAATCGGCCCGGTGCCCCTCTGTGTGTTGTGGG
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCAAGG-ATCGACCCGGT-CCCCCCTGTGTGTTGTGGG
* *
10276236 TCCCGCTACCACAACCCTCGGTCTAGCTGGG
128 TCCCGCTACCACAACCCTCGGTCCAGCTGGA
* * * * * * *
10276267 GCTTAGACATGTAATGAACTCCCTATGCCTAAGCCAACCCACGGAACGGGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
*
10276332 CCGACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCCTGTGTG
66 CCGACCGAAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCCTGTGTG
10276387 CTACCCATCC
Statistics
Matches: 220, Mismatches: 54, Indels: 11
0.77 0.19 0.04
Matches are distributed among these distances:
158 14 0.06
159 203 0.92
160 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCCTGTGTGTTGTGGGTCC
CGCTACCACAACCCTCGGTCCAGCTGGA
Found at i:10276455 original size:26 final size:26
Alignment explanation
Indices: 10276426--10276478 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10276416 CTAGTCCGAT
*
10276426 CTTAGACTGGTAG-TGAACTCCGTATG
1 CTTAGACTGG-AGATGAACTCCATATG
*
10276452 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGAGATGAACTCCATATG
10276478 C
1 C
10276479 GTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCATATG
Found at i:10277344 original size:26 final size:26
Alignment explanation
Indices: 10277294--10277346 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10277284 CCAGTCTGAC
**
10277294 CTTAGACTGGAAATGAACTTTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
10277320 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
10277346 C
1 C
10277347 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:10278028 original size:26 final size:26
Alignment explanation
Indices: 10277977--10278029 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10277967 GGCTCGAAAT
*
10277977 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10278003 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
10278029 C
1 C
10278030 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10278205 original size:26 final size:26
Alignment explanation
Indices: 10278169--10278221 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10278159 ACGGTCTGAT
*
10278169 CTTAGATTGGGAATGAACT-TAGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
10278195 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
10278221 C
1 C
10278222 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:10278645 original size:170 final size:171
Alignment explanation
Indices: 10278194--10278828 Score: 533
Period size: 170 Copynumber: 3.8 Consensus size: 171
10278184 AACTTAGTAT
* * * *
10278194 GCTTAGAC-TGGGGATGAACTCTGTATGCCTAAGTCAATCCACGAAACGAGCGTGCAAGTGCTCA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCA
** * * * * ** *
10278258 ACCAACCGGAGAGGCATAATGTGTAAGTCGGGGATCAGCTCGACCCCCCTTTGCGTGCTGTCGAT
65 ACCGGCCGGAGAGGCAGAATGAGCAAGTCGAGGATCAGCTCG-GTCCCCTCTGCGTGCTGTCGAT
* *
10278323 CCTGCTG-TCGGTCCTGCTACAACAACCCTTGGTTCGGCTGGG
129 CCTGCTGCTCGGTCCTACTACAACAACCCTTGGTTCGGCTGGA
* * *
10278365 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAA
* * * * * *
10278430 CCGGTCGGAGAGGCAGAATAAGCAAGTCAAGGATCAGCCCGGTCCCCTCTGCATGCTATCGATCC
66 CCGGCCGGAGAGGCAGAATGAGCAAGTCGAGGATCAGCTCGGTCCCCTCTGCGTGCTGTCGATCC
* * *
10278495 TGCTGCT-GGTCCTACTGTC-GCAACCTTTGGTTCGGTCT-GA
131 TGCTGCTCGGTCCTACT-ACAACAACCCTTGGTTCGG-CTGGA
* * *
10278535 TCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGTAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAA
* * * * * *
10278600 CCGGCCGAACAAGCAGAATGCGCAAGTCGAGGAT-TGTCTCGGTCCCCCTCTGCGTGCTGTCGGT
66 CCGGCCGGAGAGGCAGAATGAGCAAGTCGAGGATCAG-CTCGGT-CCCCTCTGCGTGCTGTCGAT
* * *
10278664 CC--C-GCT--G-CC-A-T-----AGCCCTCGG-TCTGGCTGGG
129 CCTGCTGCTCGGTCCTACTACAACAACCCTTGGTTC-GGCTGGA
* * ** **
10278694 GCTTAGACATGGAATGAACTCCT-TATTCCTAAGACAACCCACGAAACG-GACGTGTGGGCACTC
1 GCTTAGACATGGAATGAACT-CTGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCAGGTGCTC
* * * * * * * * *
10278757 AACCGGCCGAAGAGGCAGAAAGCGTAAG-CCAGGGATCAGCCCGATCCCCTCTACGTGCTGTTGA
64 AACCGGCCGGAGAGGCAGAATGAGCAAGTCGA-GGATCAGCTCGGTCCCCTCTGCGTGCTGTCGA
10278821 TCCTGCTG
128 TCCTGCTG
10278829 TCGCAACCCT
Statistics
Matches: 382, Mismatches: 67, Indels: 40
0.78 0.14 0.08
Matches are distributed among these distances:
158 26 0.07
159 92 0.24
160 4 0.01
161 1 0.00
164 1 0.00
165 1 0.00
166 2 0.01
167 1 0.00
168 3 0.01
169 2 0.01
170 138 0.36
171 110 0.29
172 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (171 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAA
CCGGCCGGAGAGGCAGAATGAGCAAGTCGAGGATCAGCTCGGTCCCCTCTGCGTGCTGTCGATCC
TGCTGCTCGGTCCTACTACAACAACCCTTGGTTCGGCTGGA
Found at i:10279330 original size:158 final size:158
Alignment explanation
Indices: 10279033--10279559 Score: 397
Period size: 159 Copynumber: 3.3 Consensus size: 158
10279023 CTACTGGTCT
* *
10279033 TGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGATTGAGAATGAACTTCGTATGCCTAAGCCAA
1 TGCTGTCGCAACCCTCAGTCCGATCTGATCTTAGACTGAGAATGAACTTCGTATGCCTAAGCCAA
* *
10279098 CCCACGAAACGAACGTGCGGGCGCTCAGCCAGTCGCAGAGGGAAAATGCGCAAGCCGAGGATCGA
66 CCCACGAAACGAACGTGCGGGCACTCAGCCAGGCGCAGAGGGAAAATGCGCAAGCCGAGGATCGA
*
10279163 CCCGATCCCCCCTGCGTGCTGTCGATCC
131 CCAGATCCCCCCTGCGTGCTGTCGATCC
* * * * * *
10279191 TGCTGTCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAA
1 TGCTGTCGCAACCCTCAGTCCGATCTGATCTTAGACTGAGAATGAACTTCGTATGCCTAAGCCAA
* ** * * * * * **
10279256 CCTACGAAATTAGCGTTCGGGCACTGAG-CTGGC-CAGAGAGGCATAATGCGCAAGTTGAGGATC
66 CCCACGAAACGAACGTGCGGGCACTCAGCCAGGCGCAGAG-GG-AAAATGCGCAAGCCGAGGATC
* * ** * * *
10279319 GGCCAGGTCCCCTTTTACGTGCTGCCGGTCC
129 GACCAGATCCCC-CCTGCGTGCTGTCGATCC
** * * ** ** * *
10279350 CACTGCCACAACCCTTGGTCCGAT-TGGGGCTTAGACATG-GAATGAACTCCCTATGCCTAAGCC
1 TGCTGTCGCAACCCTCAGTCCGATCT-GATCTTAGAC-TGAGAATGAACTTCGTATGCCTAAGCC
* ** * ** *
10279413 AACCCATGAAACGGGCGTGCGGGCGCTCAATC-GGC-CAGAGAGGCAGAATGCGCAAG-CGAGGG
64 AACCCACGAAACGAACGTGCGGGCACTCAGCCAGGCGCAGAG-GG-AAAATGCGCAAGCCGA-GG
* * * * * *
10279475 ATCGGCCCGGTCCCCCCT-AGTGTTGCCGATCC
126 ATCGACCAGATCCCCCCTGCGTGCTGTCGATCC
* ** * * *
10279507 TGCTGTCGCAACTCTTGGTCC-AGTCCGATCTTAGACTGGGAATGAACTCCGTA
1 TGCTGTCGCAACCCTCAGTCCGA-TCTGATCTTAGACTGAGAATGAACTTCGTA
10279560 CGCTTAGACT
Statistics
Matches: 290, Mismatches: 69, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
156 8 0.03
157 54 0.19
158 109 0.38
159 116 0.40
160 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
TGCTGTCGCAACCCTCAGTCCGATCTGATCTTAGACTGAGAATGAACTTCGTATGCCTAAGCCAA
CCCACGAAACGAACGTGCGGGCACTCAGCCAGGCGCAGAGGGAAAATGCGCAAGCCGAGGATCGA
CCAGATCCCCCCTGCGTGCTGTCGATCC
Found at i:10279565 original size:26 final size:26
Alignment explanation
Indices: 10279536--10279585 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
10279526 CCAGTCCGAT
10279536 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
*
10279562 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
10279586 AGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:10279686 original size:26 final size:26
Alignment explanation
Indices: 10279646--10279705 Score: 102
Period size: 26 Copynumber: 2.3 Consensus size: 26
10279636 GGTCGATCGG
10279646 ACTCCGTACGCTTAGACTGGGAATGA
1 ACTCCGTACGCTTAGACTGGGAATGA
* *
10279672 ACTTCGTACGCTTAGACTGGGGATGA
1 ACTCCGTACGCTTAGACTGGGAATGA
10279698 ACTCCGTA
1 ACTCCGTA
10279706 AGCCTAAGTC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (26 bp):
ACTCCGTACGCTTAGACTGGGAATGA
Found at i:10279751 original size:120 final size:121
Alignment explanation
Indices: 10279536--10279766 Score: 437
Period size: 120 Copynumber: 1.9 Consensus size: 121
10279526 CCAGTCCGAT
10279536 CTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGGATGAACTCCGTAAGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGGATGAACTCCGTAAGCCTAAGTCAACCC
10279601 ACGAAACGAGCGTGCGGGCGCTCAGCCGATC-GAAAGGTCGATCGGACTCCGTACG
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAAAGGTCGATCGGACTCCGTACG
*
10279656 CTTAGACTGGGAATGAACTTCGTACGCTTAGACTGGGGATGAACTCCGTAAGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGGATGAACTCCGTAAGCCTAAGTCAACCC
*
10279721 ACGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAAAGGTCGATCGG
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAAAGGTCGATCGG
10279767 GGAGGCATAA
Statistics
Matches: 108, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
120 94 0.87
121 14 0.13
ACGTcount: A:0.26, C:0.26, G:0.30, T:0.18
Consensus pattern (121 bp):
CTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGGATGAACTCCGTAAGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAAAGGTCGATCGGACTCCGTACG
Found at i:10280327 original size:158 final size:157
Alignment explanation
Indices: 10280062--10280563 Score: 518
Period size: 158 Copynumber: 3.2 Consensus size: 157
10280052 ACTCCATATC
*
10280062 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGACGCTCAGC
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAGC
* * * * *
10280127 CGACCGGAGAGGCAAAATGCGTAAGTCGAGGA-CCGACGCGGTCCCTCCTGCGTGCTGTTGATCC
66 CGATCGGAGAGGCAAAATGCGTAAGCCGAGGATCAG-C-CGGTCCCCCCTGCGTGCTGTAGATCC
*
10280191 TTCTGTCGCAACCCTCGATCCGATTCGAT
129 TTCTGCCGCAACCCTCGATCCGATTCGAT
* * * *
10280220 CTTAGAC-TGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGACGCTGAG
1 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAG
* * * * ** *
10280284 CCGATCGGAGAGGTATAATGCGCAAGCCGGGGATCAGTCCGGTCCCCCTCTGCGTGCTACAGGTC
65 CCGATCGGAGAGGCAAAATGCGTAAGCCGAGGATCAG-CCGGTCCCCC-CTGCGTGCTGTAGATC
* * * * **
10280349 CTGT-TGCCACAACCCTCGGTCCGACTGGGG
128 CT-TCTGCCGCAACCCTCGATCCGATTCGAT
** * **
10280379 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCATGCGGGTGCTCAG
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGACGCTCAG
* * *
10280443 CCGGTCGGAGAGGCAGAATGCGTAAGCTGAGGATCAGCCTGGTCCCCCCTGCGTGCTGTCA-ATC
65 CCGATCGGAGAGGCAAAATGCGTAAGCCGAGGATCAGCC-GGTCCCCCCTGCGTGCTGT-AGATC
* *
10280507 CTGCTGCCGTAACCCTC-AGT-C-ATATCTGAT
128 CTTCTGCCGCAACCCTCGA-TCCGAT-TC-GAT
10280537 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCTGTATGC
10280564 TTAGACTAGG
Statistics
Matches: 278, Mismatches: 53, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
156 1 0.00
157 4 0.01
158 144 0.52
159 127 0.46
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAGC
CGATCGGAGAGGCAAAATGCGTAAGCCGAGGATCAGCCGGTCCCCCCTGCGTGCTGTAGATCCTT
CTGCCGCAACCCTCGATCCGATTCGAT
Found at i:10280566 original size:26 final size:26
Alignment explanation
Indices: 10280537--10280589 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10280527 CATATCTGAT
*
10280537 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
10280563 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
10280589 C
1 C
10280590 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:10281281 original size:26 final size:26
Alignment explanation
Indices: 10281243--10281293 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
10281233 GCTCAAACTC
10281243 TTAGACTGAGAATGAACTCCGTATGT
1 TTAGACTGAGAATGAACTCCGTATGT
*
10281269 TTAGACGTG-GAATGAACTCTGTATG
1 TTAGAC-TGAGAATGAACTCCGTATG
10281294 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGT
Found at i:10281900 original size:355 final size:355
Alignment explanation
Indices: 10281241--10281888 Score: 763
Period size: 355 Copynumber: 1.8 Consensus size: 355
10281231 TGGCTCAAAC
* * * * *
10281241 TCTTAGACTGAGAATGAACTCCGTATGTTTAGACGTGGAATGAACTCTGTATGCCTAAGCCAACC
1 TCTTAGACTGAGAATGAACTCCATATGCTTAGACATCGAATGAACTCCGTATGCCTAAGCCAACC
* * *
10281306 CACGAAACGAGCGTGCGGGCGCTTAGCCAACCGGAGAGGCAGAATACGAAAGCCGGGGATCGGCT
66 CACGAAACGAGCGTGCGGGCGCTCAGCCAACCAGAGAGGCAGAATACGAAAGCCGGGGATCGCCT
** * * ** * * *
10281371 CAGTCCCCTTCTGCGTGCTGCCGGTCTCGCTGCCACAACCCTCGATCCAGCTGGGGCTTAGACAT
131 CAGTCCCCACCTGCATCCTGCCAATCTCACTACCACAACCCTCGATCCAGCTGGAGCTTAGACAT
**
10281436 GGAATAAACTCCCTATGCCTAGGCGAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCGAAG
196 GGAATAAACTAACTATGCCTAGGCGAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCGAAG
* * * * *
10281501 AGGCAGAATGCGCAAGCTAGGGATTGGCTCGGTCCCCCCTGCGTGCTGCCAATCCTGCTACTGGT
261 AGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCTGCGTGCTGCCAATCCTGCTACTGGT
10281566 CCTGTCGCCGTAACCCTTGGTCCGGTCTGA
326 CCTGTCGCCGTAACCCTTGGTCCGGTCTGA
10281596 TCTTAGACTGAGAATGAACTCCATATGCTTAGACATCGAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGAGAATGAACTCCATATGCTTAGACATCGAATGAACTCCGTATGCCTAAGCCAACC
* *** * * *
10281661 CATGAAACGAGCGTGCGGGCGCTCAGCGGGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCGACC
66 CACGAAACGAGCGTGCGGGCGCTCAGCCAACCAGAGAGGCAGAATACGAAAGCCGGGGATCG-CC
* * * *
10281726 T-A-TCCCCACCTGTATCCTGTCAATC-CTACTACCACAACCCTC-AGTCCGGTCT-GATCTTAG
130 TCAGTCCCCACCTGCATCCTGCCAATCTC-ACTACCACAACCCTCGA-TCCAG-CTGGAGCTTAG
* * * * *
10281786 AC-TGGGAATGAACTAAGTATGCCTAAGTC-AACCCACGAAAC-AAGCGTTCGGGCGCTGAGCCG
192 ACAT-GGAATAAACTAACTATGCCT-AGGCGAACCCACGAAACGAA-CGTGCGGGCGCTCAGCCG
** * * * *
10281848 GTTGGAGAGGTATAATGCGTAAGCCAGGGATCGACCCAGTC
254 GCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTC
10281889 TTGCTCTGCG
Statistics
Matches: 240, Mismatches: 46, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
353 5 0.02
354 114 0.47
355 119 0.50
356 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (355 bp):
TCTTAGACTGAGAATGAACTCCATATGCTTAGACATCGAATGAACTCCGTATGCCTAAGCCAACC
CACGAAACGAGCGTGCGGGCGCTCAGCCAACCAGAGAGGCAGAATACGAAAGCCGGGGATCGCCT
CAGTCCCCACCTGCATCCTGCCAATCTCACTACCACAACCCTCGATCCAGCTGGAGCTTAGACAT
GGAATAAACTAACTATGCCTAGGCGAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCGAAG
AGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCTGCGTGCTGCCAATCCTGCTACTGGT
CCTGTCGCCGTAACCCTTGGTCCGGTCTGA
Found at i:10282127 original size:26 final size:26
Alignment explanation
Indices: 10282098--10282149 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10282088 CTAGTCTGAT
*
10282098 CTTAGACTGG-GAATGAACTCTGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
10282124 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
10282150 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:10282298 original size:185 final size:184
Alignment explanation
Indices: 10281939--10282302 Score: 430
Period size: 184 Copynumber: 2.0 Consensus size: 184
10281929 TCCAGCTAGG
* *
10281939 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAA
* * *
10282004 CCGGTCGAAGAGGCAAAATGCACAAGATGGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCC
66 CCGATCGAAGAGGCAAAATGCACAAGATGAGGATCGACCCGATCCCCCCTACGTGCTGCCGATCC
* * *
10282069 TGCTATCGCAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCTGTAT
131 TGCTACCGCAACCCTCGGTCTAGGCTGAGCTTAGACTGGGAATGAACTCTGTAT
* * * * * **
10282123 GCTTAGAC-TGGAGATGAACTCCGTATGTCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCA
1 GCTTAGACATGGA-ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCA
* * * * * * *
10282187 ACCGATCGAAGAGGTAGAATGCACAAGCTGAGGAGT-GACCCGGTCCCCCTTTACGTGCTGCTGG
65 ACCGATCGAAGAGGCAAAATGCACAAGATGAGGA-TCGACCCGATCCCCC-CTACGTGCTGCCGA
* * *
10282251 TCCTGCTACCTCAACCCTCGGTC-CGGCTAGGGCTTAGACAT-GGAATGAACTC
128 TCCTGCTACCGCAACCCTCGGTCTAGGCT-GAGCTTAGAC-TGGGAATGAACTC
10282303 CCTATGCCTA
Statistics
Matches: 150, Mismatches: 25, Indels: 9
0.82 0.14 0.05
Matches are distributed among these distances:
183 4 0.03
184 93 0.62
185 52 0.35
186 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAA
CCGATCGAAGAGGCAAAATGCACAAGATGAGGATCGACCCGATCCCCCCTACGTGCTGCCGATCC
TGCTACCGCAACCCTCGGTCTAGGCTGAGCTTAGACTGGGAATGAACTCTGTAT
Found at i:10282427 original size:343 final size:343
Alignment explanation
Indices: 10281912--10282556 Score: 988
Period size: 343 Copynumber: 1.9 Consensus size: 343
10281902 TACCGATCCC
10281912 GCTACCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTACCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * *
10281977 CCACGAAACGGGCATGCGGGCACTCAGCCGGTCGAAGAGGCAAAATGCACAAGATGGGGATCGGC
66 CCACGAAACAGGCATGCGGGCACTCAACAGGCCGAAGAGGCAAAATGCACAAGATGGGGATCGGC
* * * * *
10282042 CCGATCCCCCCTACGTGCTGCCGATCCTGCTATCGCAACCCTCGGTCTAGTCTGATCTTAGACTG
131 CCGATCCCCCCTACGTGCTACCGATCCTGCTACCACAACCCTCGATCCAGTCTGATCTTAGACTG
*
10282107 GGAATGAACTCTGTATGCTTAGACTGGAGATGAACTCCGTATGTCTAAGTCAACCCATGAAACGA
196 GGAATGAACTCTGTATGCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
* * * * *
10282172 GCGTGCGGGTGCTCAACCGATCGAAGAGGTAGAATGCACAAGCTGAGGAGTGACCCGGTCCCCCT
261 GCGTGCGAGAGCTCAACCAACCGAAGAGGCAGAATGCACAAGCTGAGGAGTGACCCGGTCCCCCT
10282237 TTACGTGCTGCTGGTCCT
326 TTACGTGCTGCTGGTCCT
* *
10282255 GCTACCTCAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTACCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * *
10282320 CCACGAAACAGGCATGCGGGCGCTCAATAGGCC-AGAGAGGCAAAATGCGCAAG-TCGGGGATCG
66 CCACGAAACAGGCATGCGGGCACTCAACAGGCCGA-AGAGGCAAAATGCACAAGAT-GGGGATCG
* * * * * *
10282383 GCCCGATCCCCCTTGCGTGCTATCGATCTTGCTACCATAACCCTCGATCCAGTCTGATCTTAGAT
129 GCCCGATCCCCCCTACGTGCTACCGATCCTGCTACCACAACCCTCGATCCAGTCTGATCTTAGAC
* *
10282448 TGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAATC
194 TGGGAATGAACTCTGTATGCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
* *
10282513 GAGCGTGCGAGAGCTCAGCCAACCGAAGAGGCAGAATGCGCAAG
259 GAGCGTGCGAGAGCTCAACCAACCGAAGAGGCAGAATGCACAAG
10282557 TCGAGGATCG
Statistics
Matches: 270, Mismatches: 30, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
342 2 0.01
343 268 0.99
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (343 bp):
GCTACCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACAGGCATGCGGGCACTCAACAGGCCGAAGAGGCAAAATGCACAAGATGGGGATCGGC
CCGATCCCCCCTACGTGCTACCGATCCTGCTACCACAACCCTCGATCCAGTCTGATCTTAGACTG
GGAATGAACTCTGTATGCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
GCGTGCGAGAGCTCAACCAACCGAAGAGGCAGAATGCACAAGCTGAGGAGTGACCCGGTCCCCCT
TTACGTGCTGCTGGTCCT
Found at i:10282470 original size:26 final size:26
Alignment explanation
Indices: 10282441--10282493 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10282431 CCAGTCTGAT
* *
10282441 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10282467 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10282493 C
1 C
10282494 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10282744 original size:197 final size:196
Alignment explanation
Indices: 10282421--10282798 Score: 478
Period size: 197 Copynumber: 1.9 Consensus size: 196
10282411 TTGCTACCAT
* * * * ** *
10282421 AACCCTCGATCCAGTCTGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACT
1 AACCATCGATCCAGTCTGATCTTACACTGGAAATGAACTCCATATGCTTAGACTGGGAATGAACT
* * *
10282486 CCGTATGCCTAAGTCAACCCATGAATCGAGCGTGCGAGAGCTCAGCCAACCGAAGAGGCAGAATG
66 CCCTATGCCTAAGCCAACCCACGAATCGAGCGTGCGAGAGCTCAGCCAACCGAAGAGGCAGAATG
* * * * *
10282551 CGCAAGTC-GAGGATCGGCTCGGTCCCCCCCTACGTGCTGTCGATCCTACTACTGGTCTTGCTAT
131 CACAAGCCAG-GGACCGGCCCGAT-CCCCCCTACGTGCTGTCGATCCTACTACTGGTCTTGCTAT
10282615 CGC
194 CGC
10282618 AACCATCGATCC-GATCTGATCTTACACTGGAAATGAACTCCATATGCTTAGACAT-GGAATGAA
1 AACCATCGATCCAG-TCTGATCTTACACTGGAAATGAACTCCATATGCTTAGAC-TGGGAATGAA
** *
10282681 CTCCCTATGCCTAAGCCAACCCACGAAAT-GAGCGTGCG-GACGCTCAGCCGGCCGGAGAGGCAG
64 CTCCCTATGCCTAAGCCAACCCACG-AATCGAGCGTGCGAGA-GCTCAGCCAACCGAAGAGGCAG
* * *
10282744 AATGCACAAGCCAGGGACCTGCCCGATCCCCCTTGCGTGCTGTCGATCCTACTAC
127 AATGCACAAGCCAGGGACCGGCCCGATCCCCCCTACGTGCTGTCGATCCTACTAC
10282799 CGTAACCCTC
Statistics
Matches: 155, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
196 29 0.19
197 121 0.78
198 5 0.03
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.21
Consensus pattern (196 bp):
AACCATCGATCCAGTCTGATCTTACACTGGAAATGAACTCCATATGCTTAGACTGGGAATGAACT
CCCTATGCCTAAGCCAACCCACGAATCGAGCGTGCGAGAGCTCAGCCAACCGAAGAGGCAGAATG
CACAAGCCAGGGACCGGCCCGATCCCCCCTACGTGCTGTCGATCCTACTACTGGTCTTGCTATCG
C
Found at i:10283030 original size:26 final size:26
Alignment explanation
Indices: 10282992--10283044 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
10282982 CCAGTCTGAT
10282992 CTTAGACTAGGAATCAACTCC-ATATG
1 CTTAGACTAGGAATCAAC-CCTATATG
*
10283018 CTTAGAC-ATGGAATGAACCCTATATG
1 CTTAGACTA-GGAATCAACCCTATATG
10283044 C
1 C
10283045 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACCCTATATG
Found at i:10283125 original size:354 final size:355
Alignment explanation
Indices: 10282467--10283225 Score: 910
Period size: 354 Copynumber: 2.1 Consensus size: 355
10282457 ACTCTGTATG
* * *
10282467 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAATCGAGCGTGCGAGAGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGAGCTCAGC
* * * * *
10282532 CAACCGAAGAGGCAGAATGCGCAAGTCGAGGATCGGCTCGGTCCCCCCCTACGTGCTGTCGATCC
66 CAACCGAAGAGGCAGAATACACAAGCCGAGGATCGACTCGGTCCCCCCCTACGTGCTCTCGATCC
* * * * *
10282597 TACTACTGGTCTTGCTATCGCAACCATCGATCCGATCTGATCTTACACTGGAAATGAACTCCATA
131 TACTACTGGTCCTACTACCACAACCATCGATCCGATCTGATCTTACACTGGAAATCAACTCCATA
*
10282662 TGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGACGCTCA
196 TGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGACGCTCA
* *
10282727 GCCGGCCGGAGAGGCAGAATGCACAAGCCAGGGACCTGCCCGAT-CCCCCTTGCGTGCTGTCGAT
261 GCCAGCCGGAGAGGCAGAATGCACAAGCCAGGGACCTGCCCGATCCCCCCTTGC-TGCTGTCAAT
* * * *
10282791 CCTACTACCGTAACCCTCAGT-TCGGTCTGAT
325 CCTACTACCGCAAACCTCGGTCT-GATCTGAT
* * * * *
10282822 CTTAGACAGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGAGCTCAGC
*** * * * * ** *
10282887 CGGTCGGAGAGGCAGAATACACAAGCCGGGGATTGACTTGGT-CCCTTCTGCGTGCTACT-GATC
66 CAACCGAAGAGGCAGAATACACAAGCCGAGGATCGACTCGGTCCCCCCCTACGTGCT-CTCGATC
* * * *
10282950 CTGCTGCTGGTCCTACTGCCACAA-CACTCGATCC-AGTCTGATCTTAGACTAGG-AATCAACTC
130 CTACTACTGGTCCTACTACCACAACCA-TCGATCCGA-TCTGATCTTACACT-GGAAATCAACTC
*
10283012 CATATGCTTAGACATGGAATGAAC-CCTATATGCCTAAGCCAACCCATGAAATGAGCGTGC-GAG
192 CATATGCTTAGACATGGAATGAACTCC-ATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGA-
* * * * *
10283075 CGCTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GACCCGATCCCCCCTTTCTGCT
255 CGCTCAGCCAGCCGGAGAGGCAGAATGCACAAGCCAGGGACCTG-CCCGATCCCCCCTTGCTGCT
* **
10283139 GTCAATCCTGCTGTCGCAAACCTCGGTCTGATCTGAT
319 GTCAATCCTACTACCGCAAACCTCGGTCTGATCTGAT
*
10283176 -TATAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCACGAAACGAGC
1 CT-TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
10283226 ATTCGGATGC
Statistics
Matches: 343, Mismatches: 51, Indels: 21
0.83 0.12 0.05
Matches are distributed among these distances:
353 9 0.03
354 234 0.68
355 100 0.29
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.21
Consensus pattern (355 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGAGCTCAGC
CAACCGAAGAGGCAGAATACACAAGCCGAGGATCGACTCGGTCCCCCCCTACGTGCTCTCGATCC
TACTACTGGTCCTACTACCACAACCATCGATCCGATCTGATCTTACACTGGAAATCAACTCCATA
TGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGACGCTCA
GCCAGCCGGAGAGGCAGAATGCACAAGCCAGGGACCTGCCCGATCCCCCCTTGCTGCTGTCAATC
CTACTACCGCAAACCTCGGTCTGATCTGAT
Found at i:10284070 original size:26 final size:26
Alignment explanation
Indices: 10284032--10284084 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10284022 GGCTCAAACT
10284032 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
10284058 CTTAGACTTGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10284084 C
1 C
10284085 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10284259 original size:26 final size:26
Alignment explanation
Indices: 10284228--10284280 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10284218 CCGGTATGTT
*
10284228 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
10284254 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10284280 C
1 C
10284281 CTAAGCCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10284369 original size:196 final size:195
Alignment explanation
Indices: 10284031--10284387 Score: 468
Period size: 196 Copynumber: 1.8 Consensus size: 195
10284021 TGGCTCAAAC
* *
10284031 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGGAATGAACTCTGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * * * *
10284096 CATGAAACAAGTGTACGGGCGTTCAGCTGGTCGAAGGGGCAGAATGAGCAAGTCGGGGATCAACT
66 AATGAAACAAGTG-ACGGGCGCTCAGCCGATCGAAGAGACAGAATGAGCAAGCCAGGGATCAACC
** *
10284161 CGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTACTATCGCAACCCTCGATCCGGTATG
130 CAATCCCCCCTGCATGCTGTCGATCCTGCTGCTGGTCCTACTATCGCAACCCTCGATCCGGTATG
10284226 T
195 T
* *
10284227 TCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAGC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
10284292 AATGAAACGAACGTG-CGGGTGCT-GGCCGATC-AGAGAGACAGAATGTGTAAGCCAGGGATCAA
66 AATGAAAC-AA-GTGACGGGCGCTCAGCCGATCGA-AGAGACAGAATGAGCAAGCCAGGGATCAA
10284354 CCCAATCCTCCCCTGCATGCTGTCGATCCTGCTG
128 CCCAATCC-CCCCTGCATGCTGTCGATCCTGCTG
10284388 TCACAACCCT
Statistics
Matches: 137, Mismatches: 20, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
194 1 0.01
195 33 0.24
196 98 0.72
197 2 0.01
198 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.23
Consensus pattern (195 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
AATGAAACAAGTGACGGGCGCTCAGCCGATCGAAGAGACAGAATGAGCAAGCCAGGGATCAACCC
AATCCCCCCTGCATGCTGTCGATCCTGCTGCTGGTCCTACTATCGCAACCCTCGATCCGGTATGT
Found at i:10284552 original size:12 final size:12
Alignment explanation
Indices: 10284535--10284564 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
10284525 TGTCCCAGCA
10284535 TTTTTTAAAATT
1 TTTTTTAAAATT
10284547 TTTTTTAAAATT
1 TTTTTTAAAATT
10284559 TTTTTT
1 TTTTTT
10284565 GAAACAGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (12 bp):
TTTTTTAAAATT
Found at i:10285021 original size:26 final size:26
Alignment explanation
Indices: 10284983--10285033 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
10284973 GGCTCAAAAT
*
10284983 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10285009 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
10285034 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10285311 original size:159 final size:156
Alignment explanation
Indices: 10285009--10285511 Score: 526
Period size: 159 Copynumber: 3.2 Consensus size: 156
10284999 ACTCTGTATG
* *
10285009 CTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCAATGAAACGAGCGTGCAGGCGCTCAAC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACC-ATGAAACGAGCGTGCGGGCGCTCAAC
* * * *
10285074 CGATCGGAGAGGTAGAATGCGCAAGCC-AGGGATCGGCCCGATCCCCCCCTGTGTGCTGTCGATC
64 CGACCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGACCCGAT-CCCCCCTGCGTGCTGTCGATC
* * *
10285138 CCGCTACCGTAACCCTCGGTCTGGTCTGAT
127 CTGCTGCCGTAACCCTCGGTCCGGTCTGAT
* * * * * * * * *
10285168 TTTACACTGGGAATGAACTCCGTATGCATAAGTCAAGCCATGAAACAAGCGTGTGGGCGTTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAA-CCATGAAACGAGCGTGCGGGCGCTCAAC
* * * * * *
10285233 CAACCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGCATGCTGCCGGTCC
64 CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCC-CTGCGTGCTGTCGATCC
** ** **
10285298 TGCTGCCACAACCCTCAATCCGG-CTAGGG
128 TGCTGCCGTAACCCTCGGTCCGGTCT-GAT
* * *
10285327 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAAC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAA-CCATGAAACGAGCGTGCGGGCGCTCAAC
* * *
10285392 CGACCGGAGAGGCAGAATGCGCAAGTCGGGGATC-AGCCCGGTCCCCCCTGCGTGCTGTCGATCC
64 CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCGATCCCCCCTGCGTGCTGTCGATCC
* *
10285456 TGCTGCCGTAGCCCTCGGTCCAGTCTGAT
128 TGCTGCCGTAACCCTCGGTCCGGTCTGAT
*
10285485 CTTAGACTAGGAATGAACTCCATATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
10285512 TTAGATTGGG
Statistics
Matches: 274, Mismatches: 61, Indels: 19
0.77 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 65 0.24
159 204 0.74
160 4 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCATGAAACGAGCGTGCGGGCGCTCAACCG
ACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGC
TGCCGTAACCCTCGGTCCGGTCTGAT
Found at i:10285514 original size:26 final size:26
Alignment explanation
Indices: 10285485--10285537 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10285475 CCAGTCTGAT
10285485 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * * *
10285511 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
10285537 C
1 C
10285538 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:10292075 original size:26 final size:26
Alignment explanation
Indices: 10292046--10292098 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10292036 CCGGTCTGAT
10292046 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10292072 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10292098 C
1 C
10292099 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10292806 original size:26 final size:27
Alignment explanation
Indices: 10292768--10292825 Score: 93
Period size: 26 Copynumber: 2.2 Consensus size: 27
10292758 GGCTCAAAAT
10292768 CTTAGACTGGGAATGAACTCCGTATG-
1 CTTAGACTGGGAATGAACTCCGTATGC
10292794 CTTAGACAT-GGAATGAACTCCGTATGC
1 CTTAGAC-TGGGAATGAACTCCGTATGC
10292821 CTTAG
1 CTTAG
10292826 CCAACCCACG
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
26 24 0.80
27 6 0.20
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCGTATGC
Found at i:10293306 original size:26 final size:26
Alignment explanation
Indices: 10293270--10293322 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10293260 CCGGTCTTAT
*
10293270 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10293296 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10293322 C
1 C
10293323 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10293688 original size:26 final size:26
Alignment explanation
Indices: 10293638--10293690 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10293628 CTAGTTTGAT
**
10293638 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10293664 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10293690 C
1 C
10293691 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10294078 original size:159 final size:158
Alignment explanation
Indices: 10293663--10294081 Score: 432
Period size: 159 Copynumber: 2.6 Consensus size: 158
10293653 AACTTTGTAT
* * *
10293663 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGTGATCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GGGCGTGCGGGTGCTCAG
* * * * * *
10293728 TCGGTCGAAGAGGTAGAATGTGCAAACCGGGGATCGCTCCGGTCCCCCCCTTCGTGCTACCGATC
65 CCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGCTCCAGTCCCCCCCTGCGTGCTACCGATC
* * ** * *
10293793 CTGCTGCTGCAACCCTCGGTCTGATCCGA
130 CCGCTACCACAACCCTCAGTCCGATCCGA
* * *
10293822 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGG-GCGTGCGGGTGCTCA
* * * **
10293886 GCCGG-CTGGAGAGGCATAATGTGTAAGCCGGGGATCAGC-CCAGTCCCCCTCTGCGTGCTGTCG
64 GCCGGTC-GGAGAGGCAGAATGTGCAAGCCGGGGATC-GCTCCAGTCCCCCCCTGCGTGCTACCG
* *
10293949 ATCCCGCTACCACAACCCTCAGTCCGA-CTGGG
127 ATCCCGCTACCACAACCCTCAGTCCGATC-CGA
* * * * * * *
10293981 GCTTAGACATGGAATAAACTCCTTATGCCTAAGCCAACCCATGAAACGGGCATGTGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GGGCGTGCGGGTGCTCAG
** *
10294046 CCGGTCGGAGAGGCAGAATCCGCAAGCTGGGGATCG
65 CCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCG
10294082 ACCGATCCCC
Statistics
Matches: 212, Mismatches: 40, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
158 5 0.02
159 201 0.95
160 6 0.03
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGGCGTGCGGGTGCTCAGC
CGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGCTCCAGTCCCCCCCTGCGTGCTACCGATCC
CGCTACCACAACCCTCAGTCCGATCCGA
Found at i:10294154 original size:26 final size:26
Alignment explanation
Indices: 10294125--10294174 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
10294115 GTCTGATCTA
*
10294125 AGACTGGGAATGAACTCTGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
*
10294151 AGACTGGGGATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
10294175 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:10294884 original size:26 final size:26
Alignment explanation
Indices: 10294846--10294898 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10294836 GGCTCAAAAT
*
10294846 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10294872 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10294898 C
1 C
10294899 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10295349 original size:158 final size:158
Alignment explanation
Indices: 10294872--10295365 Score: 486
Period size: 158 Copynumber: 3.1 Consensus size: 158
10294862 ACTCTGTATG
* * **
10294872 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGCCGCTCAG
1 CTTAGACATAGGAATGAACTCCGTATGCCTAAGCCAAGCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * * *
10294936 CCAACCGGAGAGGCAGAA-GCGCAAGTCAGGGATCGGCCCGGTCCCCCCTATATACTATCGATCC
66 CCAACCGGAGAGG-AGAATGCGTAAGTCGGGGATCGACCCGGTCCCTCCTGTGTGCTATCGATCC
* * * ** * **
10295000 TGCTGCTGTAACCTTCAATCTGGTCCAAT
130 TGCTGCCGCAACCCTCGGTCCGGTCTGAT
* * *
10295029 CTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAAGCCACGAAACGAGCGTGC-GGTGCTGAG
1 CTTAGACATAGGAATGAACTCCGTATGCCTAAGCCAAGCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * *
10295092 CCAACCGAAGAGGAGTAATGCACT-GGGCGGGGATC-AGCCCGATCAGGCT-CTGTGTGCTATCG
66 CCAACCGGAGAGGAG-AATGC-GTAAGTCGGGGATCGA-CCCGGTC--CCTCCTGTGTGCTATCG
* * * *
10295154 ATCCTTCTGCCACAACCCTCGGTCC-GACTGCAG
126 ATCCTGCTGCCGCAACCCTCGGTCCGGTCTG-AT
* * * *
10295187 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAAGCCACGAAACGGGTGTACGGGTGCTCAG
1 CTTAGACATAGGAATGAACTCCGTATGCCTAAGCCAAGCCACGAAACGAGCGTGCGGGTGCTCAG
* * *
10295251 CCAGCTGGAGAGGTAGAATGCGTAAGTCGGGGATCGACCCGGTCCCTCCTGCGTGCTATCGATCC
66 CCAACCGGAGAGG-AGAATGCGTAAGTCGGGGATCGACCCGGTCCCTCCTGTGTGCTATCGATCC
10295316 TGCTGCCGCAACCCTCGGTCCGGTCTGAT
130 TGCTGCCGCAACCCTCGGTCCGGTCTGAT
*
10295345 CTTAGA-TTAGGAATGAACTCC
1 CTTAGACATAGGAATGAACTCC
10295366 ATATTCTTAG
Statistics
Matches: 268, Mismatches: 53, Indels: 31
0.76 0.15 0.09
Matches are distributed among these distances:
155 2 0.01
156 21 0.08
157 69 0.26
158 129 0.48
159 44 0.16
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACATAGGAATGAACTCCGTATGCCTAAGCCAAGCCACGAAACGAGCGTGCGGGTGCTCAG
CCAACCGGAGAGGAGAATGCGTAAGTCGGGGATCGACCCGGTCCCTCCTGTGTGCTATCGATCCT
GCTGCCGCAACCCTCGGTCCGGTCTGAT
Found at i:10295749 original size:26 final size:26
Alignment explanation
Indices: 10295711--10295789 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
10295701 CCGGTCTGAT
* *
10295711 CTTAGAC-TGGGAATGAACTTCGTTTG
1 CTTAGACAT-GGAATGAACTCCGTATG
10295737 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10295763 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10295789 C
1 C
10295790 CTAAGCCAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 49 0.98
27 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10296064 original size:159 final size:159
Alignment explanation
Indices: 10295762--10296201 Score: 458
Period size: 159 Copynumber: 2.8 Consensus size: 159
10295752 AACTCCGTAT
* * * * *
10295762 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCAGGCGCTCAG
1 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAG
* * * * *
10295827 CC-AGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGT-CCCCTCCTGCGTGCTGTCGA
66 CCGA-TCGGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGGTCCCCCT-CTGCGTGCTGGCGA
* ** ** * * *
10295890 TTCTGCTGTCGCAACCCTCAAACCGATTTGA
129 TCCCACTACCACAACCCTCAAACCGACTGGA
* * * * *
10295921 TCTTAGATCA-AGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGA
1 GCTTAGA-CATAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCA
* * *
10295985 GCCGATCGGAGAGGTATAATGCACAAGTCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGGCGAT
65 GCCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGGCGAT
* * * *
10296050 CCCACTACCACAACCCTCGATCCGGCTGGG
130 CCCACTACCACAACCCTCAAACCGACTGGA
* * * * *
10296080 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCAC-AAAACAGGCGTGCGGGTGTTCA
1 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGA-GCGTGCGGGCGCTCA
* ** *
10296144 GCCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCAGTCTGGTCCCCC-CTGCGTGCT
65 GCCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGGTCCCCCTCTGCGTGCT
10296202 ACCGATCCTA
Statistics
Matches: 230, Mismatches: 46, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
158 15 0.07
159 207 0.90
160 8 0.03
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (159 bp):
GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAG
CCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGGCGATC
CCACTACCACAACCCTCAAACCGACTGGA
Found at i:10296501 original size:259 final size:259
Alignment explanation
Indices: 10296014--10296524 Score: 666
Period size: 259 Copynumber: 2.0 Consensus size: 259
10296004 TGCACAAGTC
* *
10296014 GGGGATCAACCCGGTCCCCCTCTGCGTGCTGGCGATCCCACTACCACAACCCTCGATCCGGCTGG
1 GGGGATCAACCCGATCCCCCTCTGCGTGCTAGCGATCCCACTACCACAACCCTCGATCCGGCTGG
* * *
10296079 GGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACAAAACAGGCGTGCGGGTGTTCA
66 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCGTGCGGGCGCTCA
* * * *
10296144 GCCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCAGTCTGGTCCCCCCTGCGTGCTACCGATC
131 GCCGGCCGGAAAGGCAGAATGCACAAGCCGAGGATCAGTCTGATCCCCCCTGCGTGCTACCGATC
* * * *
10296209 CTACTGTCACATCCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACT-TCGTATGCGCAAGCT
196 CTACTGTCACAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCT-GTATGCGCAAGCT
** * * ** * *
10296273 GGGGATCGGCCCGATCCCCCTCTGCGTGCTATCGGTCCTGCTACCACAACCTTCGGTCCGGCTGG
1 GGGGATCAACCCGATCCCCCTCTGCGTGCTAGCGATCCCACTACCACAACCCTCGATCCGGCTGG
** *
10296338 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCA
66 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCGTGCGGGCGCTCA
* ** * * *
10296403 GTCGGCCGGAAAGGCAGAATGTGCAAGCCGAGGAT-TGTCCTGATCCTCCTTGCGTGCTACCGAT
131 GCCGGCCGGAAAGGCAGAATGCACAAGCCGAGGATCAGT-CTGATCCCCCCTGCGTGCTACCGAT
** * * * *
10296467 CCTGGTGTCGCAACCCTCGGTCCAGTCCGATCTTAGATTGGGAATTAACTCTGTATGC
195 CCTACTGTCACAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGC
10296525 TTAGACTAGG
Statistics
Matches: 214, Mismatches: 36, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
258 2 0.01
259 211 0.99
260 1 0.00
ACGTcount: A:0.20, C:0.31, G:0.27, T:0.21
Consensus pattern (259 bp):
GGGGATCAACCCGATCCCCCTCTGCGTGCTAGCGATCCCACTACCACAACCCTCGATCCGGCTGG
GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCGTGCGGGCGCTCA
GCCGGCCGGAAAGGCAGAATGCACAAGCCGAGGATCAGTCTGATCCCCCCTGCGTGCTACCGATC
CTACTGTCACAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCGCAAGCT
Found at i:10296919 original size:26 final size:26
Alignment explanation
Indices: 10296890--10296943 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
10296880 TCCGGTCCGA
10296890 GCTTAGAC-TGGGAATGAACTCCGTAT
1 GCTTAGACAT-GGAATGAACTCCGTAT
*
10296916 GCTTAGACATGGATTGAACTCCGTAT
1 GCTTAGACATGGAATGAACTCCGTAT
10296942 GC
1 GC
10296944 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (26 bp):
GCTTAGACATGGAATGAACTCCGTAT
Found at i:10297429 original size:158 final size:157
Alignment explanation
Indices: 10296917--10297429 Score: 498
Period size: 158 Copynumber: 3.2 Consensus size: 157
10296907 ACTCCGTATG
* * * * * *
10296917 CTTAGACATGGATTGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGTGCTAAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTAAGC
* * *
10296982 CAGTTGGAGAGAG-AAAATGCGTAAGCCAGGGATCGGCTCGATCCCCCCTGCGTTCTGTCGATCC
66 CAGTTGGAGAG-GCAAAATGCGTAAGCCGGGGATC-GCTCGGTCCCCCCTGCGTGCTGTCGATCC
* *
10297046 TGCTACCACAACCCTCAGTCCGATCTGAT
129 TGCTGCCACAACCCTCGGTCCGATCTGAT
* * * * *
10297075 CTTAGAC-TAGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTAAG
* * * * * * * * *
10297139 CCAATTGGAGAGGCATAATACGCAAGCCGAGGATCGACCCGGTCCCCCTTTGTGTGCTG-CCAGT
65 CCAGTTGGAGAGGCAAAATGCGTAAGCCGGGGATCG-CTCGGTCCCCC-CTGCGTGCTGTCGA-T
* * * * **
10297203 CCAGCTGCCACAACCCTCGATTCG-GCTGGGG
127 CCTGCTGCCACAACCCTCGGTCCGATCT-GAT
* * *
10297234 CTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGGGTGTGCAGGCGCTCAG
1 CTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTAAG
* * * * *
10297298 CCGGTCGGAAAGGCAGAATGCGTAAGTCGGGGATCAGCTCGGTCCCCCCTGCGTGCTGTCGATCC
65 CCAGTTGGAGAGGCAAAATGCGTAAGCCGGGGATC-GCTCGGTCCCCCCTGCGTGCTGTCGATCC
* ** *
10297363 TGCTGTCGTAACCCTTGGTCCGATCTGAT
129 TGCTGCCACAACCCTCGGTCCGATCTGAT
*
10297392 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACC
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACC
10297430 TCCAAAACAA
Statistics
Matches: 280, Mismatches: 62, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
157 5 0.02
158 151 0.54
159 121 0.43
160 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTAAGC
CAGTTGGAGAGGCAAAATGCGTAAGCCGGGGATCGCTCGGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCCACAACCCTCGGTCCGATCTGAT
Found at i:10297470 original size:158 final size:156
Alignment explanation
Indices: 10296917--10297490 Score: 476
Period size: 158 Copynumber: 3.6 Consensus size: 156
10296907 ACTCCGTATG
* * * * * * * * *
10296917 CTTAGACATGGATTGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGTGCTAAAC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGTTCAGC
* * * * *
10296982 C-AGTTGGAGAGAG-AAAATGCGTAAGCCAGGGATCGGCTCGATCCCCCCTGCGTTCTGTCGATC
65 CGA-TCGGAGAG-GCAGAATGCGTAAGCCGGGGATC-GCTCGGTCCCCCCTGCGTGCTGTCGATC
* *
10297045 CTGCTACCACAACCCTCAGTCCGATCTGAT
127 CTGCTGCCACAACCCTCGGTCCGATCTGAT
* * *
10297075 CTTAGACTAGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCGTTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGTTCAGC
* * * * * * * * * *
10297140 CAATTGGAGAGGCATAATACGCAAGCCGAGGATCGACCCGGTCCCCCTTTGTGTGCTG-CCAGTC
65 CGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCG-CTCGGTCCCCC-CTGCGTGCTGTCGA-TC
* * * * **
10297204 CAGCTGCCACAACCCTCGATTCG-GCTGGGG
127 CTGCTGCCACAACCCTCGGTCCGATCT-GAT
* * * *
10297234 CTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGGGTGTGCAGGCGCTCAG
1 CTTAGAC-TGGAATGAACTC-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGTTCAG
* * *
10297298 CCGGTCGGAAAGGCAGAATGCGTAAGTCGGGGATCAGCTCGGTCCCCCCTGCGTGCTGTCGATCC
64 CCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATC-GCTCGGTCCCCCCTGCGTGCTGTCGATCC
* ** *
10297363 TGCTGTCGTAACCCTTGGTCCGATCTGAT
128 TGCTGCCACAACCCTCGGTCCGATCTGAT
* * * *
10297392 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTC-CAAAACAAGCGTGCGGGCGTTCAA
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACC-CACGAAACGAGCGTGCAGGCGTTCAG
* * * ** *
10297456 CCGACCAGAGAGGCAGGATGCCCAAGCCAGGGATC
64 CCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATC
10297491 CAACGGGTGG
Statistics
Matches: 324, Mismatches: 77, Indels: 30
0.75 0.18 0.07
Matches are distributed among these distances:
157 5 0.02
158 193 0.60
159 123 0.38
160 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.19
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGTTCAGCC
GATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGCTCGGTCCCCCCTGCGTGCTGTCGATCCTGC
TGCCACAACCCTCGGTCCGATCTGAT
Found at i:10298133 original size:26 final size:26
Alignment explanation
Indices: 10298095--10298147 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10298085 GGCTCAAACT
10298095 CTTAGACTAGGAATGAAATCCGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
*
10298121 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAAATCCGTATG
10298147 C
1 C
10298148 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCCGTATG
Found at i:10298452 original size:26 final size:26
Alignment explanation
Indices: 10298411--10298463 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10298401 TTGGCCTGAT
10298411 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
10298437 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTAGGA-ATGAACTCCGTATG
10298463 C
1 C
10298464 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:10298636 original size:26 final size:26
Alignment explanation
Indices: 10298607--10298657 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
10298597 CCGATCTGAT
*
10298607 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
10298633 CTTAGACATGGAATGAACTTCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
10298658 CCCTAAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10298820 original size:26 final size:26
Alignment explanation
Indices: 10298791--10298843 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10298781 CCGATCCGAT
*
10298791 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
10298817 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10298843 C
1 C
10298844 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10299488 original size:158 final size:158
Alignment explanation
Indices: 10299260--10299608 Score: 414
Period size: 158 Copynumber: 2.2 Consensus size: 158
10299250 GGTGCTCAGT
* * * * * *
10299260 CGATCCGAGAGGTAGAATGCGTAAGCCGGGGATCAGTTCGATCCTCCCTACGTGCTGTCGATCCT
1 CGATCGGAGAGGCAAAATGCGTAAGCCGGGGACCAGTTCGATCCCCCCTACGTACTGTCGATCCT
* * * *
10299325 ACTGCTGCAACCTTCGGTCCGGT-TCGATCTTAGACTGGGAATGAACTTCGTATGCCAAAGTCAA
66 ACTGCTGCAACCCTCGGTCCGGTCT-GATCTTAGACTAGGAATGAACTCCGTATACCAAAGTCAA
* *
10299389 CCCACGAAACGAGTGTGCGGGCACTGAGC
130 CCCACGAAACGAGCGTGCAGGCACTGAGC
** * * *
10299418 CGATCGGAGAGGCAAAATGCGTAAGTTGGGGACCGGTTCGGTCCCCCCTACTTACTGTCGATCCT
1 CGATCGGAGAGGCAAAATGCGTAAGCCGGGGACCAGTTCGATCCCCCCTACGTACTGTCGATCCT
* * *
10299483 GCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATACCTAAGTCAAC
66 ACTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATACCAAAGTCAAC
* * * * *
10299548 CCATGAAATGAGCGTGCAGGCGCTTAGT
131 CCACGAAACGAGCGTGCAGGCACTGAGC
* * *
10299576 CGATCGTAGAGGCATAATGC-TCAAGCCGAGGAC
1 CGATCGGAGAGGCAAAATGCGT-AAGCCGGGGAC
10299609 TGACCTGGTC
Statistics
Matches: 159, Mismatches: 30, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
157 1 0.01
158 157 0.99
159 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (158 bp):
CGATCGGAGAGGCAAAATGCGTAAGCCGGGGACCAGTTCGATCCCCCCTACGTACTGTCGATCCT
ACTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATACCAAAGTCAAC
CCACGAAACGAGCGTGCAGGCACTGAGC
Found at i:10299619 original size:158 final size:158
Alignment explanation
Indices: 10299260--10299853 Score: 380
Period size: 158 Copynumber: 3.8 Consensus size: 158
10299250 GGTGCTCAGT
* * * * * * * * *
10299260 CGATCCGAGAGGTAGAATGCGTAAGCCGGGGATCAG-TTCGATCCTCCCTACGTGCTGTCGATCC
1 CGATCGGAGAGGCAAAATGCGTAAGCCGAGGA-CCGCCTCGGTCCCCCCTACGTACTGTCGATCC
* * * *
10299324 TACTGCTGCAACCTTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCCAAAGTCAA
65 TACTGCTGCAACCCTCGGTCCGGTTCGATCTTAGACTAGGAATGAACTCCGTATACCAAAGTCAA
* *
10299389 CCCACGAAACGAGTGTGCGGGCACTGAGC
130 CCCACGAAACGAGCGTGCAGGCACTGAGC
** * ** *
10299418 CGATCGGAGAGGCAAAATGCGTAAGTTGGGGACCGGTTCGGTCCCCCCTACTTACTGTCGATCCT
1 CGATCGGAGAGGCAAAATGCGTAAGCCGAGGACCGCCTCGGTCCCCCCTACGTACTGTCGATCCT
* * *
10299483 GCTGCTGCAACCCTCGGTCTGG-TCTGATCTTAGACTAGGAATGAACTCCGTATACCTAAGTCAA
66 ACTGCTGCAACCCTCGGTCCGGTTC-GATCTTAGACTAGGAATGAACTCCGTATACCAAAGTCAA
* * * * *
10299547 CCCATGAAATGAGCGTGCAGGCGCTTAGT
130 CCCACGAAACGAGCGTGCAGGCACTGAGC
* * * * * *
10299576 CGATCGTAGAGGCATAATGC-TCAAGCCGAGGACTGACCT-GGTCCCCCTCTGCATGCTGTCGAT
1 CGATCGGAGAGGCAAAATGCGT-AAGCCGAGGACCG-CCTCGGTCCCCC-CTACGTACTGTCGAT
* ** * * * * * ** * * *
10299639 -CTCATTGCCACAATCCTCAGTCTGGCTGGGGCTT-GAAC-ATGGAATGAACTCCCTATGCCTAA
63 CCT-ACTGCTGCAACCCTCGGTCCGGTTCGATCTTAG-ACTA-GGAATGAACTCCGTATACCAAA
* * * * * * * *
10299701 GCCAAGCCACGAAACGGGCATGCGGGCGCTCAGT
125 GTCAACCCACGAAACGAGCGTGCAGGCACTGAGC
* * * * * * * * *
10299735 CGGTCGGAAAGGCAGAATGCGCAAGCTGAGGATCGGCC-CGAT-CCCCCTGCGTTCTGTCGATCC
1 CGATCGGAGAGGCAAAATGCGTAAGCCGAGGA-CCGCCTCGGTCCCCCCTACGTACTGTCGATCC
* * * * * * *
10299798 TATTACCGTAACCTTCGATCCAGTTCGATCTTAGACT-GCGAATGAACTCCGTATAC
65 TACTGCTGCAACCCTCGGTCCGGTTCGATCTTAGACTAG-GAATGAACTCCGTATAC
10299854 TTACACTAGG
Statistics
Matches: 341, Mismatches: 79, Indels: 33
0.75 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 53 0.16
158 174 0.51
159 110 0.32
160 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (158 bp):
CGATCGGAGAGGCAAAATGCGTAAGCCGAGGACCGCCTCGGTCCCCCCTACGTACTGTCGATCCT
ACTGCTGCAACCCTCGGTCCGGTTCGATCTTAGACTAGGAATGAACTCCGTATACCAAAGTCAAC
CCACGAAACGAGCGTGCAGGCACTGAGC
Found at i:10300923 original size:159 final size:156
Alignment explanation
Indices: 10300570--10301014 Score: 432
Period size: 159 Copynumber: 2.8 Consensus size: 156
10300560 CTCTGTATGA
* * * *
10300570 TTAGACATGGAATGAACTCCGTAAGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAATC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA-C
* * * *
10300635 GGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGTGTACTGTCGATCCTG
65 CGCCGAAGAGGCAAAATGCGCAAGTC-GGGATCGGCCCGATCCCCCCTGTGTACTGTCGATCCCG
* * *
10300700 CTGCCACAACCCTCTGTCTGATCCGATC
129 CTACCACAACCCTCGGTCTGATCCGAGC
* * * * *
10300728 TTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCCATAAAACGAGCGTGCGGGTGCT-AAG
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA-
* * * * *
10300791 CCGATCGAAGAGGCATAATGCGCAAGTCGGTGATCGGCCC-AGTCACCCTCTGTGTACTGTTGGT
64 CCG-CCGAAGAGGCAAAATGCGCAAGTCGG-GATCGGCCCGA-TC-CCCCCTGTGTACTGTCGAT
* * *
10300855 CCCGCTACCACAACCCTCGGTCTG-GCTGGGGC
125 CCCGCTACCACAACCCTCGGTCTGATC-CGAGC
* * *
10300887 TTAGACATCGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACC
* * * * * ** *
10300952 GGCC-AGAGAGGCAGAATGCGTAAGTCGGGGATCGACTCGGTCCCCCCTGCCTGCTGTCGATCC
66 -GCCGA-AGAGGCAAAATGCGCAAGTC-GGGATCGGCCCGATCCCCCCTGTGTACTGTCGATCC
10301015 TACTGTCGTA
Statistics
Matches: 230, Mismatches: 45, Indels: 24
0.77 0.15 0.08
Matches are distributed among these distances:
157 8 0.03
158 97 0.42
159 119 0.52
160 6 0.03
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (156 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACC
GCCGAAGAGGCAAAATGCGCAAGTCGGGATCGGCCCGATCCCCCCTGTGTACTGTCGATCCCGCT
ACCACAACCCTCGGTCTGATCCGAGC
Found at i:10301076 original size:26 final size:26
Alignment explanation
Indices: 10301047--10301096 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
10301037 GTCTGATCTT
10301047 AGACTG-GGAATGAACTCCGTATGCTC
1 AGACTGAGG-ATGAACTCCGTATGCTC
10301073 AGACTGAGGATGAACTCCGTATGC
1 AGACTGAGGATGAACTCCGTATGC
10301097 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (26 bp):
AGACTGAGGATGAACTCCGTATGCTC
Found at i:10301805 original size:26 final size:26
Alignment explanation
Indices: 10301767--10301819 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10301757 GGCTTAAAAT
10301767 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
10301793 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
10301819 C
1 C
10301820 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:10302963 original size:26 final size:26
Alignment explanation
Indices: 10302934--10302986 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10302924 CCGGTCTGAT
*
10302934 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
10302960 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
10302986 C
1 C
10302987 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:10304118 original size:159 final size:157
Alignment explanation
Indices: 10303677--10304178 Score: 415
Period size: 159 Copynumber: 3.2 Consensus size: 157
10303667 AACTCCGTAT
* * * *
10303677 GCTTAGACATGCAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCAG
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGAGCTCAG
* * * * * *
10303742 TCGGTCGGAGAGGCAAATTGTGCAAGCCGAGGATCGGCCCGGTCTCCCC-CTACGTGCTGTCAAT
65 CCGATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCTCGGTC-CCCCTCTGC-TGCTGTCAAT
* * *
10303806 CCTACTATCACAACCCTTGGTCCGGTCTGA
128 CCTACTACCACAACCCTCGGTCCGGACTGA
* * * * * *
10303836 TCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTTGCTGAG
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG-AGCTCAG
* * * * * * ** * **
10303901 CCGACCGGAGAGGCATAACGCGTAAGTCGGGGATCAACTCGATCCCCCTCTGCATGCTGTCGGT-
65 CCGATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCTCTGC-TGCTGTCAATC
* * *
10303965 CTCGCTGCCACAACCCTCGGTCC-GACTGGG
129 CT-ACTACCACAACCCTCGGTCCGGACT-GA
* * * *
10303995 GCTTAGACTTGGAATGAACTCCCTATGCCTTAGCCAACCCACGAAACGGGCGTGCGAGCGCTCAG
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG-GAGCTCAG
* * *
10304060 -CAATCGGAGAGGCAAAATGCGCAAGCCAAGGATCGGCTTGGTCCCACCTGCTGCTGCTG---AT
65 CCGATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCTCGGTCCC-CCT-CTGCTGCTGTCAAT
** * * ** *
10304121 CCTACTGTCGCAACCCTCGATCTAGTCTGA
128 CCTACTACCACAACCCTCGGTCCGGACTGA
* * *
10304151 TCTTAGACTGGGAATGAACTCCATATGC
1 GCTTAGACTTGGAATGAACTCCGTATGC
10304179 TTAGACTAGG
Statistics
Matches: 268, Mismatches: 66, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
156 42 0.16
157 5 0.02
158 44 0.16
159 172 0.64
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (157 bp):
GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGAGCTCAGC
CGATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCTCTGCTGCTGTCAATCCT
ACTACCACAACCCTCGGTCCGGACTGA
Found at i:10304196 original size:26 final size:26
Alignment explanation
Indices: 10304152--10304204 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10304142 CTAGTCTGAT
*
10304152 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
*
10304178 CTTAGACTAGGG-ATCAACTCCGTATG
1 CTTAGACT-GGGAATCAACTCCATATG
10304204 C
1 C
10304205 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:10304557 original size:26 final size:26
Alignment explanation
Indices: 10304520--10304572 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10304510 CCGGTCCAAT
* *
10304520 CTTAGACTTGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10304546 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10304572 C
1 C
10304573 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10304919 original size:159 final size:158
Alignment explanation
Indices: 10304545--10304964 Score: 415
Period size: 159 Copynumber: 2.6 Consensus size: 158
10304535 AACTCTGTAT
* *
10304545 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * * **
10304610 TTGACTGGAA-AGGCAGAATGCATAAGC-CGAGGATCGGCCTAGTCCCCCCTTGTGTGCTATCGA
66 -CGGCT-GAAGAGGCAGAATGCGCAAGCTAG-GGATCGGTCTAGTCCCCCCTTGCATGCTATCGA
**
10304673 TCCTGCTGCCACAACCCTCGGTCCGAGCCGA
128 TCCCACTGCCACAACCCTCGGTCCGAGCCGA
* * * * * * *
10304704 TCTTAGAC-TGGGAATGAACT-CTGTATGCCTAAGTCAACCCACAAAATGAACTTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * *
10304767 AGCCGGCTGAAGAGGCATAATGCGCAAGCTAGGGATCGGTCT-GATCCCCCTTTGCATGTTGTC-
64 AG-CGGCTGAAGAGGCAGAATGCGCAAGCTAGGGATCGGTCTAG-TCCCCCCTTGCATGCTATCG
* * *
10304830 AGTCCCACTGCCACAACCCTCGGTCTGA-CAGGG
127 A-TCCCACTGCCACAACCCTCGGTCCGAGC-CGA
*
10304863 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
10304928 CGGAC-GGAGAGGCAGAATGTGCAAGTTGGGGATCGGT
66 CGG-CTGAAGAGGCAGAATGCGCAAGCTAGGGATCGGT
10304965 TCGGTCCCCC
Statistics
Matches: 211, Mismatches: 40, Indels: 21
0.78 0.15 0.08
Matches are distributed among these distances:
158 38 0.18
159 169 0.80
160 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CGGCTGAAGAGGCAGAATGCGCAAGCTAGGGATCGGTCTAGTCCCCCCTTGCATGCTATCGATCC
CACTGCCACAACCCTCGGTCCGAGCCGA
Found at i:10305056 original size:26 final size:26
Alignment explanation
Indices: 10305020--10305072 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10305010 CCGATTCGAT
*
10305020 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
10305046 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10305072 C
1 C
10305073 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10305798 original size:26 final size:26
Alignment explanation
Indices: 10305749--10305799 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
10305739 ATATTAGATT
*
10305749 GGGAATGAACTCCGTATACTTAAGCA
1 GGGAATGAACTCCGTATACCTAAGCA
*
10305775 GGGAATGAACTCCGTATGCCTAAGC
1 GGGAATGAACTCCGTATACCTAAGC
10305800 CAACCCATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (26 bp):
GGGAATGAACTCCGTATACCTAAGCA
Found at i:10306089 original size:158 final size:159
Alignment explanation
Indices: 10305775--10306185 Score: 416
Period size: 159 Copynumber: 2.6 Consensus size: 159
10305765 TACTTAAGCA
* *
10305775 GGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGCCGGA
1 GGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGG-CGGA
* * ** * * ****
10305840 GAGGTAGAATGAGCAAGCCGTGGATCGAACTGGTCCCCCCCTACGTGCTGTCGATCTTGCTGTTG
65 GAGGCAGAATGAGCAAGCCGGGGATCGGCCCGGTCCCCCCCTACGTGCTGTCGATCTCGCTACCA
* * *
10305905 GAACCCTTGGTTCGGTCCAATCTTAGA-TT
130 CAACCCTTGGTCCGGTCCAATCTTAGACAT
* ** * * *
10305934 GGGAATTAACTCCATATGCAAAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGGCGGAG
1 GGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCGGAG
* * * * *
10305999 AGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCTCCTCTGCGTGCTGTC-AGTCTCGCTACCA
66 AGGCAGAATGAGCAAGCCGGGGATCGGCCCGGTCCCCCCCTACGTGCTGTCGA-TCTCGCTACCA
****
10306063 CAACCCTTGGTCCGGCTGGGGT-TTAGACAT
130 CAACCCTTGGTCCGG-TCCAATCTTAGACAT
* * * * * * *
10306093 GGAAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGTCGATCAGA
1 GGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG-GCGGA
*
10306158 GAGGCAGAATGTGCAAG-CGGGGATCGGC
65 GAGGCAGAATGAGCAAGCCGGGGATCGGC
10306186 TCGATCCGCC
Statistics
Matches: 203, Mismatches: 45, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
157 1 0.00
158 70 0.34
159 114 0.56
160 18 0.09
ACGTcount: A:0.23, C:0.28, G:0.31, T:0.19
Consensus pattern (159 bp):
GGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCGGAG
AGGCAGAATGAGCAAGCCGGGGATCGGCCCGGTCCCCCCCTACGTGCTGTCGATCTCGCTACCAC
AACCCTTGGTCCGGTCCAATCTTAGACAT
Found at i:10306629 original size:169 final size:171
Alignment explanation
Indices: 10306268--10306634 Score: 418
Period size: 169 Copynumber: 2.2 Consensus size: 171
10306258 ACTCCATATG
* * * * *
10306268 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGTGTGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCGCTCAAC
* * * * * * *
10306333 CGGCCGGAGAGGCATAATGCGTAAGCTGGGGATCAACCTGATCCCCATCTGCGTGCTGCCAATCC
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAACCTGATCCCCACCTGCATGCTACCAATCC
* * * * *
10306398 CACTGTCGGTCCTGCTGCCACAACCCTCGGTCTGACTGGGC
131 CACTGTCGGTCCTACTGCCACAACCCTCAGTCAGACTCGAC
** *
10306439 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCGCTCAA
* * * * *
10306503 CCGGTC-GAGAGGCAGCATGCGCAAGCCGAGGATCAGCCTGGTCCCC-CCTGCATGCTACCGATC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAACCTGATCCCCACCTGCATGCTACCAATC
** * * *
10306566 CTGCTGTTGGTCCTACTGCCACAACCCTCAGTACAGTC-CGAT
130 CCACTGTCGGTCCTACTGCCACAACCCTCAGT-CAGACTCGAC
10306608 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
10306635 TTAGACATGG
Statistics
Matches: 163, Mismatches: 30, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
168 1 0.01
169 66 0.40
170 36 0.22
171 59 0.36
172 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (171 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCGCTCAAC
CGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAACCTGATCCCCACCTGCATGCTACCAATCC
CACTGTCGGTCCTACTGCCACAACCCTCAGTCAGACTCGAC
Found at i:10306637 original size:26 final size:26
Alignment explanation
Indices: 10306608--10306660 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10306598 ACAGTCCGAT
10306608 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
10306634 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10306660 C
1 C
10306661 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10306980 original size:159 final size:155
Alignment explanation
Indices: 10306633--10307128 Score: 498
Period size: 158 Copynumber: 3.1 Consensus size: 155
10306623 AACTCCGTAT
** *
10306633 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCTAACCCATAAAACGAGTGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGCGTGCGGGCGCTCA
* ** * * * *
10306697 GCCGGTCAGAGATACAGAATGTGCAAGTCGGGGAACGGCTCGGTCCCCCCTACATGCTGTCAATC
64 GCC-GTCGGAGAGGCAAAATGCGCAAGTCGGGGATCGGC-CGGTCCCCCCTGCATGCTGTCAATC
* * * *
10306762 CTACTGTCGCAACCCTCGATCCGGTCTG-A
127 CTGCTGCCGCAACCCTCGGTCCGG-CTGCG
* * * * *
10306791 TCTTAGACTGGGAATTAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * **
10306856 CCTGTCGGAGCA-GCATAATACGCAAGCCGAGGATCGGTCCGGTCCCCCTCTGCATGCTGTCGGT
65 CC-GTCGGAG-AGGCAAAATGCGCAAGTCGGGGATCGG-CCGGTCCCCC-CTGCATGCTGTCAAT
* * *
10306920 CCCGTTGCCACAACCCTCGGTCCGGCTGCG
126 CCTGCTGCCGCAACCCTCGGTCCGGCTGCG
* *
10306950 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
10307014 GCCGACCGGAGAGGCAAAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCAATC
64 GCCG-TCGGAGAGGCAAAATGCGCAAGTCGGGGATCG-GCCGGTCCCCCCTGCATGCTGTCAATC
*
10307079 CTGCTGCCGCAACCCTCGGTCCGG-TCCG
127 CTGCTGCCGCAACCCTCGGTCCGGCTGCG
*
10307107 ATCTTAGACTGGGAATGAACTC
1 -GCTTAGACTGGGAATGAACTC
10307129 TATATGCTTA
Statistics
Matches: 276, Mismatches: 50, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
157 5 0.02
158 145 0.53
159 125 0.45
160 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.19
Consensus pattern (155 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGTCGGAGAGGCAAAATGCGCAAGTCGGGGATCGGCCGGTCCCCCCTGCATGCTGTCAATCCTGC
TGCCGCAACCCTCGGTCCGGCTGCG
Found at i:10307867 original size:26 final size:26
Alignment explanation
Indices: 10307829--10307881 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10307819 GGCTCAAAAT
10307829 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
10307855 CTTAGACAT-GGAATGAAGTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10307881 C
1 C
10307882 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10308212 original size:26 final size:26
Alignment explanation
Indices: 10308171--10308223 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10308161 CCGGTCCGAT
10308171 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
10308197 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
10308223 C
1 C
10308224 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:10310014 original size:158 final size:157
Alignment explanation
Indices: 10309513--10310014 Score: 546
Period size: 158 Copynumber: 3.2 Consensus size: 157
10309503 ACTCCATATG
* *
10309513 CTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCATGAAACGAGCGTGC-GACTGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGAC-GCTCAG
* * *
10309577 CCGGTCGGAGAGGTAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCCCTGCGTGCTGTCGATC
65 CCGGTCGGAGAGGCAGAATGCGCAAG-CCGGGATCGGCCCGAT-CCCCCCTGCGTGCTGTCGATC
* **
10309642 CTACTACCACAACCCTCGGTCCAGTCTGAT
128 CTGCTACCACAACCCTCGGTCTGGTCTGAT
* * * * *
10309672 CTTAGA-TTGGGAATGAAC-CCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGACGCTCAG
* * * * * * *
10309735 CCGGCCGAAGAGGCATAATGCGCAAGCCGAGAATCGACTCGATCCCCCTCTGCGTGCTGTCGGTC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCG-GGATCGGCCCGATCCCCC-CTGCGTGCTGTCGATC
* * **
10309800 CCGCTATCACAACCCTCGGTCTGGT-TGGGG
128 CTGCTACCACAACCCTCGGTCTGGTCT-GAT
* ** * * * *
10309830 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGGTCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGACGCTCAGC
* * * *
10309895 CGGTCGGAGAGGCAGAATACGCAAGCCTGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCTT
66 CGGTCGGAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
* *
10309960 GCTACCGCAAGCCTCGGTCTGGTCTGAT
130 GCTACCACAACCCTCGGTCTGGTCTGAT
*
10309988 CTTAGAC-TGAGAATGAACTTCGTATGC
1 CTTAGACATG-GAATGAACTCCGTATGC
10310015 TTAGACTAGG
Statistics
Matches: 279, Mismatches: 54, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
157 10 0.04
158 176 0.63
159 92 0.33
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGACGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTG
CTACCACAACCCTCGGTCTGGTCTGAT
Found at i:10310546 original size:159 final size:158
Alignment explanation
Indices: 10310161--10310591 Score: 469
Period size: 159 Copynumber: 2.7 Consensus size: 158
10310151 GGTCCTGCTG
* * * *
10310161 CCACAACCCTCGATCCAGTTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA-CCAC
1 CCACAACCCTCGGTCCAGATGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * *
10310225 GAAACGAGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCAGCGGATCGGCCCGA
66 GAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAAAATGCGCAAGCAGCGGATCAGCCCGA
* *
10310290 TCCCCTCTATTTGCTACCGATCCTACTG
131 TCCCCTCTATTTGCTACCGATCCCACTA
* **** * * *
10310318 CCACAACCCTCAGTCC-GATCCCATCTTAGAC-TGGGAATGAACTCCGTATGCATATGTCAACCC
1 CCACAACCCTCGGTCCAGAT-GGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCC
* ** * * *
10310381 ATGAAACGAGCGTGCGAGCGCTGTGCCGACCGAAGAGGCATAATGCGCAAGCCG-GAGATCAGCC
64 ATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAAAATGCGCAAGCAGCG-GATCAGCC
* * *
10310445 CGGT-CCCTCT-TTGCGTGCTGCCGGTCCCACTA
128 CGATCCCCTCTATT---TGCTACCGATCCCACTA
* * *
10310477 CCACAACCATCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCAGATGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * * *
10310542 GAAACGGGCATGCGGGCGCTCAGCCGGCCGGAGAGGCAAAATGTGCAAGC
66 GAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAAAATGCGCAAGC
10310592 TGGGGACCTA
Statistics
Matches: 220, Mismatches: 45, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
156 5 0.02
157 51 0.23
158 58 0.26
159 103 0.47
160 3 0.01
ACGTcount: A:0.25, C:0.32, G:0.26, T:0.17
Consensus pattern (158 bp):
CCACAACCCTCGGTCCAGATGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
GAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAAAATGCGCAAGCAGCGGATCAGCCCGA
TCCCCTCTATTTGCTACCGATCCCACTA
Found at i:10310677 original size:317 final size:323
Alignment explanation
Indices: 10310014--10310683 Score: 777
Period size: 317 Copynumber: 2.1 Consensus size: 323
10310004 ACTTCGTATG
* * *
10310014 CTTAGACTAGGG-ATGAACTCCGTATGCCTAAGTCAACCTATGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGACT-GGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAG
* *
10310078 CCGGCCAGAGAGGCATAATGCGCAAGCCAGGGATCAGCCTGGTCCCCCTCTGCGTGTTACCGATC
65 CCGACCAGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGGT--CCCTCTGCGTGTT--CGA-C
** * * * **
10310143 CTGCTACCGGTCCTGCTGCCACAACCCTCGATCCAGTTGGGGCTTAGACATGGAATGAACTCTGT
125 CTGCTACCGGTCCCACTACCACAACCATCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCT
* *
10310208 ATGCCTAAGCCAACCACGAAACGAGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCGCAA
190 ATGCCTAAGCCAACCACGAAACGAGCATGCGGGCACTCAGCCGACCGGAGAGGCAAAATGCGCAA
* * * *
10310273 GCAGCGGATCGGCCCGATCCCCTCTATTTGCTACCGATCCTACTGCCACAACCCTCAGTCCGATC
255 GCAGCGGACCGACCCGATCCCCCCTATGTGCTACCGATCCTACTGCCACAACCCTCAGTCCGATC
10310338 CCAT
320 CCAT
* **
10310342 CTTAGACTGGGAATGAACTCCGTATGCATATGTCAACCCATGAAACGAGCGTGCGAGCGCTGTGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAGC
*
10310407 CGACC-GAAGAGGCATAATGCGCAAGCC-GGAGATCAGCCCGGT-CC-CT-C-T-TT-G-CGTGC
66 CGACCAG-AGAGGCATAATGCGCAAGCCAGG-GATCAGCCCGGTCCCTCTGCGTGTTCGACCTGC
* *
10310463 TGCCGGTCCCACTACCACAACCATCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGC
129 TACCGGTCCCACTACCACAACCATCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGC
* * * * * *
10310528 CTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAGCCGGCCGGAGAGGCAAAATGTGCAAGCT
194 CTAAGCCAA-CCACGAAACGAGCATGCGGGCACTCAGCCGACCGGAGAGGCAAAATGCGCAAGCA
* * * * * * * * * * ***
10310593 GGGGACCTATCCGGTCCCCCCTGTGTGCTACCGATCCTGCTGTCGA-AACCCTCGGTCTGGTTTT
258 GCGGACCGACCCGATCCCCCCTATGTGCTACCGATCCTACTG-CCACAACCCTCAGTCCGATCCC
10310657 AT
322 AT
*
10310659 CTTAGACTGGGAATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
10310684 ACTTAGATTG
Statistics
Matches: 293, Mismatches: 44, Indels: 21
0.82 0.12 0.06
Matches are distributed among these distances:
316 69 0.24
317 117 0.40
318 3 0.01
321 2 0.01
322 1 0.00
323 1 0.00
324 2 0.01
325 2 0.01
327 6 0.02
328 90 0.31
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (323 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAGC
CGACCAGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGGTCCCTCTGCGTGTTCGACCTGCTA
CCGGTCCCACTACCACAACCATCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
AAGCCAACCACGAAACGAGCATGCGGGCACTCAGCCGACCGGAGAGGCAAAATGCGCAAGCAGCG
GACCGACCCGATCCCCCCTATGTGCTACCGATCCTACTGCCACAACCCTCAGTCCGATCCCAT
Found at i:10310688 original size:26 final size:26
Alignment explanation
Indices: 10310659--10310709 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
10310649 CTGGTTTTAT
*
10310659 CTTAGACTG-GGAATGAACTCTGTATA
1 CTTAGACTGAGG-ATGAACTCCGTATA
*
10310685 CTTAGATTGAGGATGAACTCCGTAT
1 CTTAGACTGAGGATGAACTCCGTAT
10310710 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATA
Found at i:10317202 original size:11 final size:11
Alignment explanation
Indices: 10317186--10317224 Score: 78
Period size: 11 Copynumber: 3.5 Consensus size: 11
10317176 AGGCTCTTCA
10317186 ACGATGCTCCG
1 ACGATGCTCCG
10317197 ACGATGCTCCG
1 ACGATGCTCCG
10317208 ACGATGCTCCG
1 ACGATGCTCCG
10317219 ACGATG
1 ACGATG
10317225 GTGCCCTGGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.21, C:0.33, G:0.28, T:0.18
Consensus pattern (11 bp):
ACGATGCTCCG
Found at i:10317332 original size:26 final size:26
Alignment explanation
Indices: 10317294--10317346 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10317284 GGCTCAAAAT
10317294 CTTAGACTGCGAATGAACTCCATATG
1 CTTAGACTGCGAATGAACTCCATATG
*
10317320 CTTAGACAT-CGAATGAACTCCGTATG
1 CTTAGAC-TGCGAATGAACTCCATATG
10317346 C
1 C
10317347 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCATATG
Found at i:10317518 original size:26 final size:26
Alignment explanation
Indices: 10317489--10317539 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
10317479 CCGATCTGAT
10317489 CTTAGACTGGGAATAAACTCCGTATA
1 CTTAGACTGGGAATAAACTCCGTATA
* * *
10317515 CTTAGACTGGGGATGAACTTCGTAT
1 CTTAGACTGGGAATAAACTCCGTAT
10317540 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATA
Found at i:10317906 original size:26 final size:26
Alignment explanation
Indices: 10317868--10317920 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10317858 CCGGTCTGAT
*
10317868 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10317894 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10317920 C
1 C
10317921 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10318285 original size:26 final size:26
Alignment explanation
Indices: 10318249--10318301 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10318239 CCAGTCCGAT
*
10318249 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
10318275 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10318301 C
1 C
10318302 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10318622 original size:26 final size:26
Alignment explanation
Indices: 10318593--10318642 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
10318583 ATCTGATCTT
*
10318593 AGACTGTGAATGAACTCCGTATGCTG
1 AGACTGGGAATGAACTCCGTATGCTG
* *
10318619 AGACTGGGGATGAACTTCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
10318643 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTG
Found at i:10320406 original size:26 final size:25
Alignment explanation
Indices: 10320364--10320415 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
10320354 GGCTCAAACT
*
10320364 CTTAGACTGTAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
10320389 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
10320415 C
1 C
10320416 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:10320678 original size:170 final size:170
Alignment explanation
Indices: 10320388--10320838 Score: 448
Period size: 170 Copynumber: 2.7 Consensus size: 170
10320378 AACTCCGTAT
* *
10320388 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACAAAACAAGCATGCAGGCGCTCAG
* * * *
10320453 CTGGCCGGATAGGCAGAATGCGTAAGTCGGGGATCAGCCAGGTCCCCCTCTGCGTGCTGCCAATC
66 CAGGCCGGAGAGGCAGAATGCGCAAGTCGGGGACCAGCCAGGTCCCCCTCTGCGTGCTGCCAATC
10320518 TCGCTGCCGATCTTGGTACCACACCCTCAGTTCGACTGGG
131 TCGCTGCCGATCTTGGTACCACACCCTCAGTTCGACTGGG
* ** * *
10320558 GCTTAGACATGGAATGAACTCTGTACGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACAAAACAAGCATGCAGGCGCTCAG
* * ** *
10320623 CAGGCTGGAGAGGCAGAATGCGCAAGTCGGGGACCGGCCCTGTCCCCAC-CTGCGTGCTGTCAAT
66 CAGGCCGGAGAGGCAGAATGCGCAAGTCGGGGACCAGCCAGGTCCCC-CTCTGCGTGCTGCCAAT
* ** * * *
10320687 CT---TGCTG--C-T-G---CA-ACCCTTGGTCTAGTCT-GA
130 CTCGCTGCCGATCTTGGTACCACACCCTCAGT-TCGACTGGG
* * * * * * *
10320717 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTACGCCTAAGCCAACCCACAAAACAAGCATGCAGGCGCTCA
* * * * *
10320781 GTC-GGTCGGAGAGGCAGAATACGCAAGCCGGGGATCAGCCTGGTCCCCC-CTGCGTGCT
65 G-CAGGCCGGAGAGGCAGAATGCGCAAGTCGGGGACCAGCCAGGTCCCCCTCTGCGTGCT
10320839 TCTGATCCTG
Statistics
Matches: 239, Mismatches: 38, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
158 11 0.05
159 100 0.42
160 7 0.03
163 1 0.00
164 1 0.00
165 1 0.00
167 4 0.02
170 113 0.47
171 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.19
Consensus pattern (170 bp):
GCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACAAAACAAGCATGCAGGCGCTCAG
CAGGCCGGAGAGGCAGAATGCGCAAGTCGGGGACCAGCCAGGTCCCCCTCTGCGTGCTGCCAATC
TCGCTGCCGATCTTGGTACCACACCCTCAGTTCGACTGGG
Found at i:10320926 original size:26 final size:26
Alignment explanation
Indices: 10320888--10320940 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10320878 CTCATGGGAT
*
10320888 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10320914 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10320940 C
1 C
10320941 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10322581 original size:184 final size:184
Alignment explanation
Indices: 10322266--10322824 Score: 579
Period size: 195 Copynumber: 3.0 Consensus size: 184
10322256 TTCGGTTGGG
* * * * *
10322266 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
10322331 TCGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGACTTGGTCCCCCCTGTGTG--ATGCTGAT
66 TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGATCCCCCCTGCGTGCTAT-C-GAT
* * *
10322394 CCTGCTGCCACAACCCTCGATCCAGTTTGATCTTAGACTGGGATTGAACTCCATAT
129 CCTGCTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCATAT
* * *
10322450 GCTTAGAC-TGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
10322514 GTCGGTCGGAAAGGCAGAATACGTAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTATCGATC
65 GTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGATCCCCCCTGCGTGCTATCGAT-
* *
10322579 CTGCTGCTATCCTGTTGCCGCAACCCTCGAT-CACGTCTGATCTTAGACTAGGAATGAACTCCGT
129 C--CTG-----C---TGCCGCAACCCTCGATCCA-GTCTGATCTTAGACTGGGAATGAACTCCAT
10322643 AT
183 AT
* * * * *
10322645 GCTTAGACATGGAATAAAC-TCTGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGAGTGCTCA
1 GCTTAGACATGGAATGAACTTC-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
10322709 GCCGATCGGAGAGGCAGAATGTGCAAGTCGGGGATCGACCTGATCCCCTCCTGCGTGCTATCGAT
65 GTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGATCCCC-CCTGCGTGCTATCGAT
* ** * * * *
10322774 CCTACTGTTGCAACCCTCGGTCCGGTCTGATCTCAAACTGGGAATGAACTC
129 CCTGCTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTC
10322825 TGTATGCCTA
Statistics
Matches: 308, Mismatches: 48, Indels: 37
0.78 0.12 0.09
Matches are distributed among these distances:
183 1 0.00
184 103 0.33
185 39 0.13
186 3 0.01
187 3 0.01
188 1 0.00
192 1 0.00
193 2 0.01
194 4 0.01
195 134 0.44
196 17 0.06
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGATCCCCCCTGCGTGCTATCGATCC
TGCTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCATAT
Found at i:10322658 original size:26 final size:26
Alignment explanation
Indices: 10322620--10322672 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10322610 CACGTCTGAT
*
10322620 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
*
10322646 CTTAGAC-ATGGAATAAACTCTGTATG
1 CTTAGACTA-GGAATAAACTCCGTATG
10322672 C
1 C
10322673 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:10322948 original size:159 final size:158
Alignment explanation
Indices: 10322646--10323169 Score: 472
Period size: 159 Copynumber: 3.3 Consensus size: 158
10322636 ACTCCGTATG
* * * * * ** *
10322646 CTTAGACATGGAATAAACTCTGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGAGTGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTAAGC
* * * * * *
10322711 C-GATCGGAGAGGCAGAATGTGCAAG-TCGGGGATCGACCTGATCCCCTCCTGCGTGCTATCGAT
65 CAGCT-GGAGAGGCAGAATGCGAAAGCT-GGGGATCGGCCCGATCCCC-CTTGCGTGCTATCGAT
** *
10322774 CCTACTGTTGCAACCCTCGGTCCGGTCT-GAT
127 CCTACTGCCGCAACCCTCGATCCGGTCTCGAT
* * * * * *
10322805 CTCAAACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTAAGC
* * * *
10322870 CAGCTGGAGAGGCATAATGCGTAAGCTGGGGTTCGGCCCGATCCCCCTTTGTGTGCTATCGATCC
65 CAGCTGGAGAGGCAGAATGCGAAAGCTGGGGATCGGCCCGATCCCCC-TTGCGTGCTATCGATCC
* ** * * **
10322935 CACTGCCATAACCCTCGATCTGG-CTGGGG
129 TACTGCCGCAACCCTCGATCCGGTCTCGAT
* * * * *
10322964 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCAGGCATTAAG-
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTAAGC
* * * * *
10323028 GA-CCGGAGAGGCAGAGTGTC-AAAGCTGGGGATCGGCCCGATCCCCAC-TACGTGCTGTCGATC
65 CAGCTGGAGAGGCAGAATG-CGAAAGCTGGGGATCGGCCCGATCCCC-CTTGCGTGCTATCGATC
* *
10323090 CTGCTGCCGCAACCCTCGATCCAGT-TCGAT
128 CTACTGCCGCAACCCTCGATCCGGTCTCGAT
*
10323120 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC
10323170 ATGTGCAAGC
Statistics
Matches: 296, Mismatches: 59, Indels: 23
0.78 0.16 0.06
Matches are distributed among these distances:
155 1 0.00
156 77 0.26
157 36 0.12
158 7 0.02
159 171 0.58
160 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTAAGCC
AGCTGGAGAGGCAGAATGCGAAAGCTGGGGATCGGCCCGATCCCCCTTGCGTGCTATCGATCCTA
CTGCCGCAACCCTCGATCCGGTCTCGAT
Found at i:10323508 original size:26 final size:26
Alignment explanation
Indices: 10323470--10323521 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10323460 CTGGTCTGAT
10323470 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10323496 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10323522 GCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10323999 original size:26 final size:26
Alignment explanation
Indices: 10323970--10324022 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10323960 CTGATCCGAT
10323970 CTTAGACTAGGAATGAAC-TCTGTATG
1 CTTAGACTAGGAATGAACTTC-GTATG
* *
10323996 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
10324022 C
1 C
10324023 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:10324768 original size:26 final size:26
Alignment explanation
Indices: 10324724--10324773 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
10324714 CCGGTCTGAA
*
10324724 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
10324750 CTTAGACTAGGG-ATAAACTTCGTA
1 CTTAGACT-GGGAATAAACTCCGTA
10324774 CGCCTAAGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:10325551 original size:158 final size:157
Alignment explanation
Indices: 10325079--10325552 Score: 481
Period size: 158 Copynumber: 3.0 Consensus size: 157
10325069 ATGCTTGAAC
* * * * * **
10325079 ATGGGATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGAGCGCTCAGCTGGCCGG
1 ATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGG
* * * * * * *
10325144 AGAGGCAGAATGCTCAAGCTAGGGATCGACCCGGTCCCCCCTTGTGTGCTATCGATCCTGCTATC
66 AGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCAC-TGCGTGCTGTCGATCTTGCTGTC
10325209 GCAACCTTCGGTCTGGTTCGATCTTAG-A
130 GCAACCTTCGGTCT-GTTCGATCTTAGAA
* * * * *
10325237 CTGGGAATGAACTCTGTATACCTAAGTCAACCCATGAAACGAGCGTGTGGGCGCTAAGCCGATCG
1 AT-GGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCG
* * * * *
10325302 GAGAGGCATAATGCGCAAG-TGGGGATC-AGCCCGATCCCCCTCTGCGTGCTG-CTGGTCTCGCT
65 GAGAGGCAGAATGCGCAAGCTGGGGATCGA-CCCGGT-CCCCACTGCGTGCTGTC-GATCTTGCT
* * * * **
10325364 GCCACAACCTTCGATCTGATTGGGGCTTAGAA
127 GTCGCAACCTTCGGTCTG-TTCGATCTTAGAA
* * * * **
10325396 ATGGAATGAACTCCCTATTCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGATCAA
1 ATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGG
* *
10325461 AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCACTGCGTGCTGTCGATCTTACTGTCG
66 AGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCACTGCGTGCTGTCGATCTTGCTGTCG
*
10325526 CAACCCTCGGTCCTG-TCTGATCTTAGA
131 CAACCTTCGGT-CTGTTC-GATCTTAGA
10325553 TTAGGAATAA
Statistics
Matches: 251, Mismatches: 54, Indels: 22
0.77 0.17 0.07
Matches are distributed among these distances:
157 4 0.02
158 155 0.62
159 91 0.36
160 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (157 bp):
ATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGG
AGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCACTGCGTGCTGTCGATCTTGCTGTCG
CAACCTTCGGTCTGTTCGATCTTAGAA
Found at i:10326309 original size:26 final size:26
Alignment explanation
Indices: 10326271--10326323 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10326261 GGCTCAAACT
*
10326271 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
10326297 CTTAGA-TATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
10326323 C
1 C
10326324 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:10326484 original size:26 final size:26
Alignment explanation
Indices: 10326455--10326507 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10326445 CTGGTTAGAT
10326455 CTTAGACTGGGAATCAACTCTGTATG
1 CTTAGACTGGGAATCAACTCTGTATG
* * *
10326481 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATCAACTCTGTATG
10326507 C
1 C
10326508 CTAAGTCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCTGTATG
Found at i:10326702 original size:26 final size:26
Alignment explanation
Indices: 10326664--10326716 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10326654 CCGGTCCGAT
10326664 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10326690 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
10326716 C
1 C
10326717 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10326992 original size:159 final size:159
Alignment explanation
Indices: 10326699--10327184 Score: 387
Period size: 159 Copynumber: 3.1 Consensus size: 159
10326689 GCTTAGACAT
* * * *
10326699 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGTCGGCTGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGCTGGAC
* * * * ** *
10326764 AGGTAGAATGCGTAAGCCAGGGATCGATCCAGTCCCTCCCTACGTGCTGTCGATCCTGCTGTCGC
66 AGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCTCCCTACGTGCTGTCCATCCTGCTACCAC
10326829 AACCCTCGGTCCGATCCGATCTTAGATTG
131 AACCCTCGGTCCGATCCGATCTTAGATTG
* * * *
10326858 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTGAGTCAG-TCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGCT-GGA
* * * * * * ** *
10326922 CTGGCATAATGCGCAAGCCAGGGATTGGCCCGGTCCCTCTCTGTGTGCT-TCCAGTTCTGCTACC
65 CAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCTCCCTACGTGCTGTCCA-TCCTGCTACC
* * * * * ** *
10326986 ATAACCCTCGATTCG-GCTGGGGCTTAGACAT-
129 ACAACCCTCGGTCCGATC-CGATCTTAGA-TTG
* * * * * * *
10327017 GGAATGAACTCTC-TATGCCTAAGCCAACTCATGAAACGGGCATGCGGGCGCTCAGTCGGCCGAA
1 GGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGCTGGA
* * * * * * * *
10327081 GAGGCAGAATGCGTAAGCC-GAGATC-AGCCCCGTCCC-CCCTACGTCCTG-CTGATCCTGTTGC
65 CAGGCAGAATGCGCAAGCCAGGGATCGA-CCCAGTCCCTCCCTACGTGCTGTC-CATCCTGCTAC
** * *
10327142 CACAACCCTCTATCTGATCCGATCTTAGACTG
128 CACAACCCTCGGTCCGATCCGATCTTAGATTG
10327174 GGAATGAACTC
1 GGAATGAACTC
10327185 TATATGCTTA
Statistics
Matches: 248, Mismatches: 68, Indels: 24
0.73 0.20 0.07
Matches are distributed among these distances:
156 1 0.00
157 44 0.18
158 19 0.08
159 182 0.73
160 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGCTGGAC
AGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCTCCCTACGTGCTGTCCATCCTGCTACCAC
AACCCTCGGTCCGATCCGATCTTAGATTG
Found at i:10328061 original size:26 final size:26
Alignment explanation
Indices: 10328025--10328077 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10328015 TCAGTCTGAT
*
10328025 CTTAGATTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
10328051 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
10328077 C
1 C
10328078 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:10329086 original size:26 final size:26
Alignment explanation
Indices: 10329048--10329100 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10329038 TCGGTCCGAT
10329048 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10329074 CTTAGACAT-GGAATGAACTCCTTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
10329100 C
1 C
10329101 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10330446 original size:26 final size:26
Alignment explanation
Indices: 10330405--10330457 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10330395 CCAGTCTGAT
*
10330405 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACACCATATG
*
10330431 CTTAGACTAGGG-ATGAACACCGTATG
1 CTTAGACT-GGGAATGAACACCATATG
10330457 C
1 C
10330458 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:10331561 original size:26 final size:26
Alignment explanation
Indices: 10331510--10331562 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10331500 CCGGTCTGAT
* *
10331510 CTTAGACTGGGAATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
10331536 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
10331562 C
1 C
10331563 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:10332159 original size:11 final size:11
Alignment explanation
Indices: 10332143--10332172 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
10332133 CGGTTAGGCT
10332143 CTCCGACGATG
1 CTCCGACGATG
10332154 CTCCGACGATG
1 CTCCGACGATG
*
10332165 CTCTGACG
1 CTCCGACG
10332173 GTGGTTCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.17, C:0.37, G:0.27, T:0.20
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:10332825 original size:26 final size:26
Alignment explanation
Indices: 10332796--10332848 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10332786 CCGGTTCAAT
10332796 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
10332822 CTTAGACATGGAATGAGCTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10332848 C
1 C
10332849 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10332915 original size:27 final size:27
Alignment explanation
Indices: 10332877--10332931 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
10332867 CGACCGTGCA
10332877 CTGAGCTGATCGGAGAGGCATAATGCG
1 CTGAGCTGATCGGAGAGGCATAATGCG
*
10332904 CTGAGTTGATCGGAGAGGCATAATGCG
1 CTGAGCTGATCGGAGAGGCATAATGCG
10332931 C
1 C
10332932 AAGTCGAGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.25, C:0.18, G:0.36, T:0.20
Consensus pattern (27 bp):
CTGAGCTGATCGGAGAGGCATAATGCG
Found at i:10333628 original size:344 final size:342
Alignment explanation
Indices: 10332917--10333954 Score: 981
Period size: 355 Copynumber: 3.0 Consensus size: 342
10332907 AGTTGATCGG
* * ** * * * * * *
10332917 AGAGGCATAATGCGCAAGTC-GAGGATCGGGTCAGTCCCCCTCTGCGTGTTGTCGGTCTCGTTAC
1 AGAGGCATAATGCGCAAGCCAG-GGATCAGCCCAGTCCCCTTCTGTGTGCTGTCGGTCCCGCTGC
* * *
10332981 CGCAACCCTCGGTCCGGCTGAGGG-TTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCAT
65 CACAACCCTCGGTCCGGCT-AGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * * * * *
10333045 GAAATGGGCGTGCAGGCGCTCAACCGGCCGTAGAGGCAGAATGCACAAGCTGGGGATCAGCCCGG
129 GAAACGGGCGTGCAGGCGCTCAGCCGGCCGAAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGA
* * * * *
10333110 TCCCTCCTTACGTGCTGTCGATCCTGCTGCTGGTCCTACTACCGCAACCCTCGATCCGATTCGAT
194 TCCC-CCCTGCGTGCTCT-GAT-C--CTGCT-G------T--CGCAACCCTCGATCTGATCCGAT
* * ***
10333175 CTTAGACTGGGAATGAACTCCGTATGCTAAGACATGGAATGAATTCTC-TATGTAAAAGTCAACC
245 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTC-CGTATGCCTAAGTCAACC
* * * *
10333239 CACGAAACGAGCGTACGGGCGCTGAGCCGGTCGA
309 CAAGAAACGAGCGTACGGGCGCTCAACCGGCCGA
* *
10333273 AGAGGCATAATGCGCCAGCCAGGGATCAGCCCGGGTCCCCTTCTGTGTGCTGTCGGTCCCGCTGC
1 AGAGGCATAATGCGCAAGCCAGGGATCAGCCC-AGTCCCCTTCTGTGTGCTGTCGGTCCCGCTGC
*
10333338 CACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
65 CACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* * * * *
10333403 AAACGGGCGTGCGGGCTCTCAGTCGGCCGAAAAGGTAGAATGTGCAAGCCGGGGATCGGCCCGAT
130 AAACGGGCGTGCAGGCGCTCAGCCGGCCGAAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGAT
*
10333468 CCCCCCTGCGTGCTACTGATCCTGCTGTCGCAACCCTCGATCTGATCCGATCTTAGATTGGGAAT
195 CCCCCCTGCGTGCT-CTGATCCTGCTGTCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAAT
* ** * *
10333533 TAACTATGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCAAGAAATGAGCGT
259 GAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGT
*
10333597 ACGGGTGCTCAACCGGCCGA
323 ACGGGCGCTCAACCGGCCGA
* * * *
10333617 AGAGGCATAATGCGCAAGCCGGGGGTTAGCCCAATCCCCCTCTGCGTGCTGTCGATCCCGCTGTC
1 AGAGGCATAATGCGCAAGCCAGGGATCAGCCCAGT--CCC-CT---T-CTGT-G-T---GCTGTC
* * * * **
10333682 GGTCCTGCTGCCATAACCCTCGGTCCGGCTAGGGCTTAGATATAGAATGAACTCTATATGCCTAA
54 GGTCCCGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* * * * * * * **
10333747 GCCAACCCACGAAACGAGCGTGCAGACGCTCAGCCGACC-AGAGGAGCAGAATACGTAAGCCAAG
119 GCCAACCCACGAAACGGGCGTGCAGGCGCTCAGCCGGCCGAAAAG-GCAGAATGCGCAAGCCGGG
* * * * * * * * *
10333811 GATCGACCTGATCCCTCCTGCGTGC-CTGCGATCCTGCTGCCGTAACCCTTGGTCTGGTCTGATC
183 GATCGGCCCGATCCCCCCTGCGTGCTCT--GATCCTGCTGTCGCAACCCTCGATCTGATCCGATC
* * *
10333875 TTATACTGGTAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
246 TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCA
*
10333940 TGAAACGAGCGTACG
311 AGAAACGAGCGTACG
10333955 AACGCTCAGC
Statistics
Matches: 564, Mismatches: 96, Indels: 45
0.80 0.14 0.06
Matches are distributed among these distances:
343 3 0.01
344 127 0.23
345 3 0.01
346 3 0.01
349 1 0.00
350 4 0.01
351 1 0.00
352 2 0.00
353 7 0.01
354 3 0.01
355 230 0.41
356 42 0.07
357 138 0.24
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (342 bp):
AGAGGCATAATGCGCAAGCCAGGGATCAGCCCAGTCCCCTTCTGTGTGCTGTCGGTCCCGCTGCC
ACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
AACGGGCGTGCAGGCGCTCAGCCGGCCGAAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATC
CCCCCTGCGTGCTCTGATCCTGCTGTCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGA
ACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTACG
GGCGCTCAACCGGCCGA
Found at i:10340194 original size:26 final size:26
Alignment explanation
Indices: 10340156--10340208 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10340146 GGCTCAAAAT
*
10340156 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10340182 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10340208 C
1 C
10340209 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10340909 original size:26 final size:26
Alignment explanation
Indices: 10340871--10340923 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10340861 CTGGTCTAAT
*
10340871 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
*
10340897 CTTAGAC-ATGGAAAGCACTCCGTATG
1 CTTAGACTA-GGAAAGAACTCCGTATG
10340923 C
1 C
10340924 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCCGTATG
Found at i:10342112 original size:26 final size:26
Alignment explanation
Indices: 10342074--10342126 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10342064 GGCACAAAAT
10342074 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
*
10342100 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACCCCGTATG
10342126 C
1 C
10342127 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:10342438 original size:156 final size:157
Alignment explanation
Indices: 10342099--10342535 Score: 574
Period size: 156 Copynumber: 2.8 Consensus size: 157
10342089 AACCCCGTAT
* * * * * * *
10342099 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGGAACGAGCATGCAGGG-GCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTAC-GGGCGCTCA
* ** * * *
10342163 ACCGGTCGGAGAGGCATAATGCGTAAGTC-GAGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGG
65 GCCGACCGAAGAGGCAGAATGCGTAAGCCAG-GGATCGGCCCGAT--CCCTCTGCGTGCTGCCGG
* *
10342227 TCCCGCTGCCACAACCCTCGGTCCGGCTGGG
127 CCCCGCTGCCACAACCCTCGGTCCAGCTGGG
* *
10342258 GCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAG
* * * *
10342323 CTGACCGAAGAGGCAGAATGCGCAAGGCAGGGATCGGCCCGATCCCTCTGCGTTCTG-CGGCCCC
66 CCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCTCTGCGTGCTGCCGGCCCC
*
10342387 GCTGCCATAACCCTCGGTCCAGCTGGG
131 GCTGCCACAACCCTCGGTCCAGCTGGG
* *
10342414 GCTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACCCATGAAATGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAG
* * *
10342479 CCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCCCTACGTGCTG
66 CCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCTCTGCGTGCTG
10342536 TGATCCTGCT
Statistics
Matches: 244, Mismatches: 32, Indels: 7
0.86 0.11 0.02
Matches are distributed among these distances:
156 142 0.58
157 13 0.05
158 3 0.01
159 85 0.35
160 1 0.00
ACGTcount: A:0.22, C:0.32, G:0.30, T:0.16
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAG
CCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCTCTGCGTGCTGCCGGCCCC
GCTGCCACAACCCTCGGTCCAGCTGGG
Found at i:10342585 original size:156 final size:156
Alignment explanation
Indices: 10342099--10342590 Score: 495
Period size: 156 Copynumber: 3.1 Consensus size: 156
10342089 AACCCCGTAT
* * * * * * * *
10342099 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGGAACGAGCATGCAGGG-GCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTAC-GGGCACTCA
* ** * * * * * *
10342163 ACCGGTCGGAGAGGCATAATGCGTAAGTC-GAGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGG
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCAG-GGATCGGCCCGAT-CCCC-CTACGTGCTG-CGA
* * * *
10342227 TCCCGCTGCCACAACCCTCGGTCCGGCTGGG
126 CCCCGCTGCCACAACCCTCGATCCAGCTGGA
*
10342258 GCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCACTCAG
* * * * * *
10342323 CTGACCGAAGAGGCAGAATGCGCAAGGCAGGGATCGGCCCGATCCCTCTGCGTTCTGCGGCCCCG
66 CCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTACGTGCTGCGACCCCG
* * *
10342388 CTGCCATAACCCTCGGTCCAGCTGGG
131 CTGCCACAACCCTCGATCCAGCTGGA
* * *
10342414 GCTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACCCATGAAATGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCACTCAG
* * * * *
10342479 CCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCCCTACGTGCTGTGATCCTG
66 CCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTACGTGCTGCGACCCCG
** * * * *
10342544 CTGCTGCAACCCTTGATCCGGTTTGA
131 CTGCCACAACCCTCGATCCAGCTGGA
*
10342570 TCTTAGA-ATGAGAATGAACTC
1 GCTTAGACATG-GAATGAACTC
10342591 TGTATACTTA
Statistics
Matches: 283, Mismatches: 47, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
155 3 0.01
156 179 0.63
157 9 0.03
158 6 0.02
159 85 0.30
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCACTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTACGTGCTGCGACCCCG
CTGCCACAACCCTCGATCCAGCTGGA
Found at i:10343226 original size:513 final size:489
Alignment explanation
Indices: 10342597--10343550 Score: 1182
Period size: 489 Copynumber: 1.9 Consensus size: 489
10342587 ACTCTGTATA
* *
10342597 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAAGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAATGAGCGTGCGGGCGCTCAGC
*
10342662 CGACCGGAGAGGCATAATGCGCAAGCCGAGGGTCAGCCCGGTCTCCCTCTGCGTGCTACCGATCC
66 CGACCGGAGAGGCATAATGCGCAAGCCGAGGGTCAGCCCGGTCCCCCTCTGCGTG----C--T--
* * * * *
10342727 CGTTGCCGGTCCTGCTACCACAACCCTCGGTTCAG-CTAGGGCTTAGACATGGAATGAACTTCGT
123 -GTT---GGTCCCGCTACCACAACCCCCAG-TCAGTCTAGGGCTTAGACATGGAATGAACTCCCT
* *
10342791 ATGCCTAAGCCAACCCACGAAATGAGTGTAC-GGCGCTCAACCGGCC-AGAGAGGTAAAATACGC
183 ATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAACCGGCCGA-AGAGGCAAAATACGC
* * * *
10342854 AAGTCGAGGATTGGCCCGATCGCCCCTGCGTGCTGTCGATCCTACTGCTGGTCTTGCTACTGCAA
247 AAGCCGAGGATTGGCCCGATC-CCCCTACGTACTGTCGATCCTA------------CTACAGCAA
* * **
10342919 TCCTCGATCCAGTCCGATCTTAGATTAGGAATGAACTCTGTATGCTTAGACAT-GGAAGGAACTC
299 CCCTCGATCCAGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGA-ATGGGAAGGAACTC
* * *
10342983 CGTATGCCTAAGCCAACCCAGGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAAAATGC
363 CGTATGCCTAAGACAACCCAGGAAATGAGCGTACGGGCGCTCAGCCGATCAGAGAGGCAAAATGC
10343048 GCAAGCCGGGGATCCCCCTGAGTGCTTCGGTCCTGCTATCGCAACCCTTGGTCCGGTCTGAT
428 GCAAGCCGGGGATCCCCCTGAGTGCTTCGGTCCTGCTATCGCAACCCTTGGTCCGGTCTGAT
* *
10343110 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACA-AAATGAGCGTGCGGGCGTTGAG
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCA-AGAAATGAGCGTGCGGGCGCTCAG
* * *
10343174 CCGACCGGAGAGGCATAATGCTCAAGTCG-GGGATCGGCCCGGTCCCCCTCTGCGTGCTGTTGGT
65 CCGACCGGAGAGGCATAATGCGCAAGCCGAGGG-TCAGCCCGGTCCCCCTCTGCGTGCTGTTGGT
* *
10343238 CCCGCTACCACAACCCCCAGTCCGTCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
129 CCCGCTACCACAACCCCCAGTCAGTCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * *
10343303 AACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGTAAGCCGAGGATT
194 AACCCACGAAATGAGCGTACGGGCGCTCAACCGGCCGAAGAGGCAAAATACGCAAGCCGAGGATT
* *
10343368 GGCCCGATCCCCCTACGTACTGTCGATCCTACTACAGCAACCCTCGATCCGGTCTGATCTTAGAC
259 GGCCCGATCCCCCTACGTACTGTCGATCCTACTACAGCAACCCTCGATCCAGTCCGATCTTAGAC
* * * * * *
10343433 TGGGAATGAACTCCATATGCTTAGATTGGGGATGAACTCCGTATGCCTAAGATAACCCATGAAAT
324 TAGGAATGAACTCCATATGCTTAGAATGGGAAGGAACTCCGTATGCCTAAGACAACCCAGGAAAT
* *** *
10343498 GTGCGTACGGGCGCTCAGCCGATCAGAGAGGCCGGATGCGCAAGTCGGGGATC
389 GAGCGTACGGGCGCTCAGCCGATCAGAGAGGCAAAATGCGCAAGCCGGGGATC
10343551 GAATGGGTGG
Statistics
Matches: 389, Mismatches: 46, Indels: 36
0.83 0.10 0.08
Matches are distributed among these distances:
488 1 0.00
489 129 0.33
500 3 0.01
501 95 0.24
502 45 0.12
503 1 0.00
504 3 0.01
507 1 0.00
509 1 0.00
512 3 0.01
513 106 0.27
514 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (489 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAATGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCATAATGCGCAAGCCGAGGGTCAGCCCGGTCCCCCTCTGCGTGCTGTTGGTCC
CGCTACCACAACCCCCAGTCAGTCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAATGAGCGTACGGGCGCTCAACCGGCCGAAGAGGCAAAATACGCAAGCCGAGGATTGG
CCCGATCCCCCTACGTACTGTCGATCCTACTACAGCAACCCTCGATCCAGTCCGATCTTAGACTA
GGAATGAACTCCATATGCTTAGAATGGGAAGGAACTCCGTATGCCTAAGACAACCCAGGAAATGA
GCGTACGGGCGCTCAGCCGATCAGAGAGGCAAAATGCGCAAGCCGGGGATCCCCCTGAGTGCTTC
GGTCCTGCTATCGCAACCCTTGGTCCGGTCTGAT
Found at i:10343462 original size:26 final size:26
Alignment explanation
Indices: 10343426--10343478 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10343416 CCGGTCTGAT
10343426 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
10343452 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10343478 C
1 C
10343479 CTAAGATAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10343485 original size:27 final size:26
Alignment explanation
Indices: 10343433--10343485 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10343423 GATCTTAGAC
*
10343433 TGGGAATGAACTCCATATGCTTAGAT
1 TGGGAATGAACTCCATATGCTAAGAT
* *
10343459 TGGGGATGAACTCCGTATGCCTAAGAT
1 TGGGAATGAACTCCATATG-CTAAGAT
10343486 AACCCATGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 17 0.74
27 6 0.26
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
TGGGAATGAACTCCATATGCTAAGAT
Found at i:10344140 original size:26 final size:26
Alignment explanation
Indices: 10344111--10344163 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10344101 CACTCAAAAT
*
10344111 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
10344137 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
10344163 C
1 C
10344164 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:10344431 original size:185 final size:185
Alignment explanation
Indices: 10344109--10344471 Score: 480
Period size: 185 Copynumber: 2.0 Consensus size: 185
10344099 GTCACTCAAA
* *
10344109 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACGCAGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
* ** *
10344174 CCCTGAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGCAAAATGCACAAGCCGAGGAACGGC
66 CCCTGAAACGAGCATAAGGGCGCTCAACCGGTCGGAGAGGCAAAATGCACAAGCCGAGGAACGAC
* * * *
10344239 TCGATCCCCCTCTACGTGCTAC-CGGTCCCGTTGCCACAACCCTCGGTCTGATCTG
131 CCGATCCCCCTCTACATGCT-CTCAGTCCCGCTGCCACAACCCTCGGTCTGATCTG
* * * * *
10344294 ATCTTAGACTGGGAATGAACGCAGTTTGCTTAGAC-TGGGGATGAGCTCCGTATGCCTAAGTCAA
1 ATCTTAGACTGGGAATGAACGCAGTATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAA
* * * * * *
10344358 CCCAC-GAAACGAGCATAAGGGTGCTCAGCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCG
65 CCC-CTGAAACGAGCATAAGGGCGCTCAACCGGTCGGAGAGGCAAAATGCACAAGCCGAGGAACG
*
10344422 ACCCGATCCCCCTCTGCATGCTCTCAGTCCCGCTGCCACAACCCTCGGTC
129 ACCCGATCCCCCTCTACATGCTCTCAGTCCCGCTGCCACAACCCTCGGTC
10344472 CTGCTGAGGC
Statistics
Matches: 153, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
184 2 0.01
185 150 0.98
186 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (185 bp):
ATCTTAGACTGGGAATGAACGCAGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
CCCTGAAACGAGCATAAGGGCGCTCAACCGGTCGGAGAGGCAAAATGCACAAGCCGAGGAACGAC
CCGATCCCCCTCTACATGCTCTCAGTCCCGCTGCCACAACCCTCGGTCTGATCTG
Found at i:10344690 original size:26 final size:26
Alignment explanation
Indices: 10344639--10344691 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10344629 CTGATCTGAT
** *
10344639 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACACCATATG
*
10344665 CTTAGACTGGGGATGAACACCATATG
1 CTTAGACTGGGAATGAACACCATATG
10344691 C
1 C
10344692 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:10345728 original size:158 final size:159
Alignment explanation
Indices: 10345382--10345728 Score: 389
Period size: 159 Copynumber: 2.2 Consensus size: 159
10345372 TGAACTCCAT
* * *
10345382 ATGCTTAGACA-AGGAATGAACTTCGTATGCCTAAGCCAACCAATGAAATGAGCATGCGGGCGCT
1 ATGCTTAGACATA-GAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCATGCGGGCGCT
* * * * * * *
10345446 CAGCCGATCGAAGAGGCAGAATGCGTAAGCCGGGGAATGGCTCGGTCCCCCTCTACGTGCTGTCG
65 CAACCGACCGAAGAGGCAGAATGCGCAAGCCAGGGAATGGCCCGATCCACCTCTACGTGCTGTCG
* * **
10345511 GTCCTGCTGCCACAACCCTCGGTCTGGCTG
130 ATCCTGCTACCACAACCCTCGGTCAAGCTG
* * * * * *
10345541 GTGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTC
1 ATGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCATGCGGGCGCTC
* * *
10345606 AACCGGCCGGAGAGGCAGAATGCGCAAGCCAGGG-CTCGGCCCGATCCACC-CTACGTGCTGTCG
66 AACCGACCGAAGAGGCAGAATGCGCAAGCCAGGGAAT-GGCCCGATCCACCTCTACGTGCTGTCG
* **
10345669 ATCTTGCTACCACAACCCTCGGTCCAATTTG
130 ATCCTGCTACCACAACCCTCGGT-CAAGCTG
10345700 AT-CTTAGAC-TCAGAATGAACTCCGTATGC
1 ATGCTTAGACAT-AGAATGAACTCCGTATGC
10345729 TTAGATTGGG
Statistics
Matches: 155, Mismatches: 29, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
157 1 0.01
158 57 0.37
159 97 0.63
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
ATGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCATGCGGGCGCTC
AACCGACCGAAGAGGCAGAATGCGCAAGCCAGGGAATGGCCCGATCCACCTCTACGTGCTGTCGA
TCCTGCTACCACAACCCTCGGTCAAGCTG
Found at i:10345939 original size:26 final size:26
Alignment explanation
Indices: 10345910--10345962 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10345900 TCCGATCGAT
10345910 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
10345936 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10345962 C
1 C
10345963 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10346642 original size:317 final size:316
Alignment explanation
Indices: 10345935--10346754 Score: 872
Period size: 317 Copynumber: 2.6 Consensus size: 316
10345925 AACTCCGTAT
* * * * *
10345935 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTAAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTCTCAG
* * * * * * * *
10346000 CTGGTCGGAGAGGTAGAATGCCCAAGCCG-GAGATCGACCTCG-TCCCCCCTACGTACCGTCGAT
66 CTGATCGAAGAGGTAGAATGCGCAAGCCGAG-GATCG-GCTCGATTCCCCCTGCGTGCTGTCGAT
* *
10346063 CCTGCTGC-TATAACCCTTGATCCAATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
129 CCTGCTGCGTAT--CCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
** * * * ** *
10346127 CAACCCATGAAACGAGCGTTCGAGCACTGTGTCAGCCGACGAGGCATAATGCGGAAGCTAGGGAT
192 CAACCCACAAAACGAGCATTCGAGCACTGAGACAGCCGACGAGGCATAATGCACAAGCCAGGGAT
* * * * *
10346192 CGACCCGGTCCCCCTCTGCGTGCTGCCAGTCTCGTTGCCACAACCCTCGGTCCGATTGGG
257 CGACCCGATCCCCCTCTACGTGCTGCCAGTCTCCTTGCCACAAACCTCGATCCGATTGGG
* * * * **
10346252 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTACAAG-TGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCT-CTCA
* * *
10346316 GCCGATCGAAAAGGTAGAATGCGCAAGCCGAGGATCGGCTCGATTCCCCCTGCGTGCTATCGATC
65 GCTGATCGAAGAGGTAGAATGCGCAAGCCGAGGATCGGCTCGATTCCCCCTGCGTGCTGTCGATC
* *
10346381 CTGCTGTCGTATCCCTCGATCTGATCCGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCA
130 CTGCTG-CGTATCCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCA
* * *
10346446 ACCCACAAAACGAGCA-TCTGGGCGCTGAGAC-GACCGGA-GAGGCATAATGCACAAGCCGGGGA
194 ACCCACAAAACGAGCATTC-GAGCACTGAGACAG-CC-GACGAGGCATAATGCACAAGCCAGGGA
* * * * *
10346508 TCGGCCCGATCCCCCTCTATGTGCTGCCCGT-TCCTCTGCCACAAACCTCTATCCGGTTGGG
256 TCGACCCGATCCCCCTCTACGTGCTGCCAGTCTCCT-TGCCACAAACCTCGATCCGATTGGG
* *
10346569 GCTTAGACATGAAATGAACTCCCCATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTCTCAG
* * * * * * *
10346634 CTGATCGAAGAGGCAGAGTGTGCAAGTC-AGGGATTGGCCCGA-TCCCTTCC-GCATGCTGTCGA
66 CTGATCGAAGAGGTAGAATGCGCAAGCCGA-GGATCGGCTCGATTCCC--CCTGCGTGCTGTCGA
* * * * *
10346696 TCCTGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT-TCGTATGC
128 TCCTGCT-GCGTATCCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCT-GTATGC
10346755 TTAGACTGGG
Statistics
Matches: 416, Mismatches: 72, Indels: 30
0.80 0.14 0.06
Matches are distributed among these distances:
316 16 0.04
317 390 0.94
318 7 0.02
319 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTCTCAG
CTGATCGAAGAGGTAGAATGCGCAAGCCGAGGATCGGCTCGATTCCCCCTGCGTGCTGTCGATCC
TGCTGCGTATCCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
CCACAAAACGAGCATTCGAGCACTGAGACAGCCGACGAGGCATAATGCACAAGCCAGGGATCGAC
CCGATCCCCCTCTACGTGCTGCCAGTCTCCTTGCCACAAACCTCGATCCGATTGGG
Found at i:10346764 original size:26 final size:26
Alignment explanation
Indices: 10346728--10346780 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10346718 CCGGTCTGAT
*
10346728 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10346754 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10346780 C
1 C
10346781 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10347489 original size:26 final size:26
Alignment explanation
Indices: 10347452--10347502 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
10347442 GCTCAATCTC
10347452 TTAGAATGGGAATGAACTTCGTATGA
1 TTAGAATGGGAATGAACTTCGTATGA
10347478 TTAGACAT-GGAATGAACTTCGTATG
1 TTAGA-ATGGGAATGAACTTCGTATG
10347503 CCTAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGAATGGGAATGAACTTCGTATGA
Done.