Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 55 of 402
Found at i:10347835 original size:26 final size:26
Alignment explanation
Indices: 10347796--10347846 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
10347786 AGTTAGATCT
10347796 TAGACTGGGAATGAACTCCGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
*
10347822 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
10347847 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:10348026 original size:26 final size:26
Alignment explanation
Indices: 10347989--10348039 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
10347979 CGGTCCGATC
*
10347989 TTAGACTGGGAATGAACTCTGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
10348015 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
10348040 CCAAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:10348743 original size:26 final size:26
Alignment explanation
Indices: 10348712--10348762 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
10348702 TCGGTATGAT
10348712 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
10348738 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
10348763 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10350193 original size:159 final size:156
Alignment explanation
Indices: 10349837--10350761 Score: 540
Period size: 159 Copynumber: 5.8 Consensus size: 156
10349827 ACTCCGTATG
* * *
10349837 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCTTACGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTGAGC
* * * * * * * * *
10349902 CGGTCGGAGAGGCAAAATGCACGAGCTAGGGATCGGCGC-GGTCCCCC-CTGCGTGCTATTGATC
66 TGGCCGGAGAGGCATAATGCACAAGCCAGGGATC-GC-CTGATCCCCCTCTACGTGCTGTCGATC
* * * * * * **
10349965 CTGCTGCCGCAACCTTC-AGTCCGGTCCGA
129 C-ACTACCACAACCCTCGA-TCAGCTGGGA
* ** ** * *
10349994 TCTT-G-CACTAGGAATGAACTCCGTAGGTGTAAGTAAACCCATGGAACGAGCGTGCGGGTGCTG
1 -CTTAGACA-T-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTG
* *
10350057 AGCTGGCCGGA-AGGGCATACTACACAAGCCAGGGATCGGCCTGATCCCCCTCTACGTGCTGTCG
63 AGCTGGCCGGAGA-GGCATAATGCACAAGCCAGGGATC-GCCTGATCCCCCTCTACGTGCTGTCG
* * * *
10350121 GTCTCGCTACCACAACCCTCGATCTGACTGGGG
126 ATC-CACTACCACAACCCTCGATCAG-CTGGGA
* *
10350154 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGGTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTGAGC
* * ** ** *
10350219 TGGCCGGAGAGGTAGAATGCACAATTCAGGGATCGATTCGATCCCCC-CTACGTGCTGTCCATCC
66 TGGCCGGAGAGGCATAATGCACAAGCCAGGGATCGCCT-GATCCCCCTCTACGTGCTGTCGATCC
* ** * * * *
10350283 TACTATCGTAACCCTTGGTCCGGTCT-GGT
130 -ACTACCACAACCCTCGAT-CAG-CTGGGA
* ** * * *
10350312 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAATCAATCCACGAAAGGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTGAG
* * * * * * *
10350376 CTGACCAGAGAGGCATAATGCGCGAGCCAGGGATCAGCCTGGTCCCCTTCTACGTGCTGCCGATC
65 CTGGCCGGAGAGGCATAATGCACAAGCCAGGGATC-GCCTGATCCCCCTCTACGTGCTGTCGAT-
* * *
10350441 CCACTGCCACAACCCTCAGACCAGTTGGGA
128 CCACTACCACAACCCTC-GATCAGCTGGGA
* * * * * * *** *
10350471 ATTAGACATGGAATGAACTCCCTATGCCTAAGCCATCCCACGAAATGGGCATGCGGGCATTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTGAGC
* * * * * * *
10350536 CGGCCGAAGAGGCAGAATGCGCAAGCC-GAGGATCGGCTCGGTCCCCCTTACGTGCTGCCGATCC
66 TGGCCGGAGAGGCATAATGCACAAGCCAG-GGATCGCCT-GAT-CCCC---C-T-CT----A-CG
* * * * * * *
10350600 TGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTTGGGG
118 TGCTGTCGATCC-ACTACCACAACCCTCGAT-CAGCTGGGA
* * * *
10350641 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTGAGC
* ** * * * * * *
10350706 CGGCTAGAGAGGTAGAATGCGCAAGTCAGGGATCGCCCCGATCCCCC-CTGCGTGCT
66 TGGCCGGAGAGGCATAATGCACAAGCCAGGGATCG-CCTGATCCCCCTCTACGTGCT
10350762 ACCGATCCTG
Statistics
Matches: 594, Mismatches: 135, Indels: 76
0.74 0.17 0.09
Matches are distributed among these distances:
156 2 0.00
157 6 0.01
158 211 0.36
159 223 0.38
160 15 0.03
161 2 0.00
163 2 0.00
164 1 0.00
165 2 0.00
166 1 0.00
169 8 0.01
170 119 0.20
171 2 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTGAGC
TGGCCGGAGAGGCATAATGCACAAGCCAGGGATCGCCTGATCCCCCTCTACGTGCTGTCGATCCA
CTACCACAACCCTCGATCAGCTGGGA
Found at i:10350590 original size:317 final size:316
Alignment explanation
Indices: 10349838--10350600 Score: 816
Period size: 317 Copynumber: 2.4 Consensus size: 316
10349828 CTCCGTATGC
* *
10349838 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCTTACGGGTGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAGCC
* * * * * * ** *
10349903 GGTCGGAGAGGCAAAATGCACGAGCTAGGGATCGGCGCGGTCCCCCCTGCGTGCTATTGATCCTG
66 GGCCGGAGAGGCAGAATGCACAAGC-AGGGATCGGCTCGGTCCCCCCTACGTGCTGTCCATCCTA
* ** *
10349968 CTGCCGCAACCTTCAGTCCGGTCCGATCTTGCACTAGGAATGAACTCCGTAGGTGTAAGTAAACC
130 CTACCGCAACCTTCAGTCCGGTCCGATCTTGCACTAGGAATGAACTCCGTAGGCCTAAATAAACC
* * * * * * *
10350033 CATGGAACGAGCGTGCGGGTGCTGAGCTGGCCGGAAGGGCATACTACACAAGCCAGGGATCGGCC
195 CACGAAACGAGCGTGCGGGCGCTGAGCTGACCAGAAGGGCATAATACACAAGCCAGGGATCAGCC
* * * * * * **
10350098 TGATCCCCCTCTACGTGCTGTCGGTCTCGCTACCACAACCCTCGATCTGACTGGGGC
260 TGATCCCCCTCTACGTGCTGCCGATCCCACTACCACAACCCTCGACCAGACTGGGAA
* * *
10350155 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGGTCAGCT
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAGCC
* * ** *
10350220 GGCCGGAGAGGTAGAATGCACAATTCAGGGATCGATTCGATCCCCCCTACGTGCTGTCCATCCTA
66 GGCCGGAGAGGCAGAATGCACAA-GCAGGGATCGGCTCGGTCCCCCCTACGTGCTGTCCATCCTA
* * * * * * * * *
10350285 CTATCGTAACCCTT-GGTCCGGTCTGGTCTTAG-ACTGGGAATGAACTTCGTATGCCTAAATCAA
130 CTACCGCAA-CCTTCAGTCCGGTCCGATCTT-GCACTAGGAATGAACTCCGTAGGCCTAAATAAA
* * * * *
10350348 TCCACGAAAGGAGCGTGCGGGCGCTGAGCTGACCAG-AGAGGCATAATGCGCGAGCCAGGGATCA
193 CCCACGAAACGAGCGTGCGGGCGCTGAGCTGACCAGAAG-GGCATAATACACAAGCCAGGGATCA
* * * *
10350412 GCCTGGTCCCCTTCTACGTGCTGCCGATCCCACTGCCACAACCCTCAGACCAG-TTGGGAA
257 GCCTGATCCCCCTCTACGTGCTGCCGATCCCACTACCACAACCCTC-GACCAGACTGGGAA
* * * * ***
10350472 TTAGACATGGAATGAACTCCCTATGCCTAAGCCATCCCACGAAATGGGCATGCGGGCATTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAGCC
* * * *
10350537 GGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCTTACGTGCTG-CCGATCCT
66 GGCCGGAGAGGCAGAATGCACAAGCAG-GGATCGGCTCGGTCCCCCCTACGTGCTGTCC-ATCCT
10350601 GCTGTCGATC
Statistics
Matches: 366, Mismatches: 73, Indels: 14
0.81 0.16 0.03
Matches are distributed among these distances:
316 6 0.02
317 350 0.96
318 10 0.03
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (316 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAGCC
GGCCGGAGAGGCAGAATGCACAAGCAGGGATCGGCTCGGTCCCCCCTACGTGCTGTCCATCCTAC
TACCGCAACCTTCAGTCCGGTCCGATCTTGCACTAGGAATGAACTCCGTAGGCCTAAATAAACCC
ACGAAACGAGCGTGCGGGCGCTGAGCTGACCAGAAGGGCATAATACACAAGCCAGGGATCAGCCT
GATCCCCCTCTACGTGCTGCCGATCCCACTACCACAACCCTCGACCAGACTGGGAA
Found at i:10350609 original size:12 final size:12
Alignment explanation
Indices: 10350588--10350619 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
10350578 CCCCCTTACG
10350588 TGCTGCCGATCC
1 TGCTGCCGATCC
*
10350600 TGCTGTCGATCC
1 TGCTGCCGATCC
10350612 TGCTGCCG
1 TGCTGCCG
10350620 CAACCCTCGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.38, G:0.28, T:0.28
Consensus pattern (12 bp):
TGCTGCCGATCC
Found at i:10350769 original size:170 final size:170
Alignment explanation
Indices: 10350430--10350773 Score: 449
Period size: 170 Copynumber: 2.0 Consensus size: 170
10350420 CCCTTCTACG
10350430 TGCTGCCGATCCCACTGCCACAACCCTCAGACCAGTTGGGAATTAGACATGGAATGAACTCCCTA
1 TGCTGCCGATCCCACTGCCACAACCCTCAGACCAGTTGGGAATTAGACATGGAATGAACTCCCTA
* * * *
10350495 TGCCTAAGCCATCCCACGAAATGGGCATGCGGGCATTCAGCCGGCCGAAGAGGCAGAATGCGCAA
66 TGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAGCCGGCAGAAGAGGCAGAATGCGCAA
* * * * * *
10350560 GCCGAGGATCGGCTCGGTCCCCCTTACGTGCTGCCGATCC
131 GCAGAGGATCGCCCCGATCCCCCCTACGTGCTACCGATCC
* ** * * * * **
10350600 TGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTA
1 TGCTGCCGATCCCACTGCCACAACCCTCAGACCAGTTGGGAATTAGACATGGAATGAACTCCCTA
* * *
10350665 TGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGCTAG-AGAGGTAGAATGCGCA
66 TGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAGCCGGC-AGAAGAGGCAGAATGCGCA
*
10350729 AGTCAG-GGATCGCCCCGATCCCCCCTGCGTGCTACCGATCC
130 AG-CAGAGGATCGCCCCGATCCCCCCTACGTGCTACCGATCC
10350770 TGCT
1 TGCT
10350774 ACTGCAACCT
Statistics
Matches: 149, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
170 146 0.98
171 3 0.02
ACGTcount: A:0.21, C:0.33, G:0.28, T:0.18
Consensus pattern (170 bp):
TGCTGCCGATCCCACTGCCACAACCCTCAGACCAGTTGGGAATTAGACATGGAATGAACTCCCTA
TGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAGCCGGCAGAAGAGGCAGAATGCGCAA
GCAGAGGATCGCCCCGATCCCCCCTACGTGCTACCGATCC
Found at i:10350835 original size:26 final size:26
Alignment explanation
Indices: 10350799--10350854 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
10350789 CTGATCTGAC
**
10350799 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10350825 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10350851 CTTA
1 CTTA
10350855 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10351277 original size:197 final size:196
Alignment explanation
Indices: 10350942--10351355 Score: 596
Period size: 197 Copynumber: 2.1 Consensus size: 196
10350932 GGTAGGTGGA
* *
10350942 CGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTACATGCTACTGGTCCTACTG
1 CGGAGAGGCAGAATGCGCAAGTCGGGGATAGACCCGGTCCCCCCTACATGCTACTGATCCTACTG
* * * *
10351007 CCGGTCCTGCTGCCATAACCCTCGGTCCAATCCGATCTTAGATTGGGAATGAACTCCGTATGCTT
66 CCGGTCCTGCTGCCACAACCCTCAGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCAT
* * *
10351072 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATTAGCGTACGGGCGCTCAGCCGA
131 ACACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGCCGA
10351137 T
196 T
*** * * *
10351138 CGGAGAGGCAGAATGCGCAAGTCGGGGATAGACCCGGTCCCTCCCTGTGTGCT-GTCGATCTTGC
1 CGGAGAGGCAGAATGCGCAAGTCGGGGATAGACCCGGTCCC-CCCTACATGCTACT-GATCCTAC
* * * *
10351202 TGCTGGTCTTGCTGTCACAACCCTCAGTCCAATCCGATCTTAGACTGGGAATTAACTCCGTATGC
64 TGCCGGTCCTGCTGCCACAACCCTCAGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGC
* *
10351267 ATACACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTC
129 ATACACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGCC
10351332 GAT
194 GAT
* *
10351335 CGGGGAGGCAGAATGTGCAAG
1 CGGAGAGGCAGAATGCGCAAG
10351356 CCAGGGACCG
Statistics
Matches: 193, Mismatches: 23, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
196 41 0.21
197 152 0.79
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (196 bp):
CGGAGAGGCAGAATGCGCAAGTCGGGGATAGACCCGGTCCCCCCTACATGCTACTGATCCTACTG
CCGGTCCTGCTGCCACAACCCTCAGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCAT
ACACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGCCGA
T
Found at i:10351777 original size:158 final size:156
Alignment explanation
Indices: 10351274--10351785 Score: 503
Period size: 159 Copynumber: 3.2 Consensus size: 156
10351264 TGCATACACA
* * * *
10351274 TGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGATCGGG
1 TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGTCGATCGGA
* * * * * * *
10351339 GAGGCAGAATGTGCAAGCCAGGGACCGGCCTGATCCCCCCTACGTGCTGTCGATCCTGCTACCGT
66 GAGGCAGAATGCGCAAGCCAGGGATCGACCCGAT-CCCCCTACGTGCTGTTGATCCTGCTATCGC
* * *
10351404 AACCGTTGGTTCGGTCCGATCTTAGAC
130 AACCCTTGGTCCGGTTCGATCTTAGAC
** * * * * * *
10351431 TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATTCAGGCGCTGAGCCGACCGGA
1 TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGTCGATCGGA
* ** * *
10351496 GAGGCATAATGCGCAAGCTGGGGATCGA-CCAAGTCCCCCT-C-TGCATGTTG--CCGGTCTCAC
66 GAGGCAGAATGCGCAAGCCAGGGATCGACCCGA-TCCCCCTACGTGC-TGTTGATCCTG-CT-A-
* * * * **
10351556 TGCCACAACTCTTGGTCCGGCTGGGGCTTAGAC
126 T--CGCAACCCTTGGTCCGGTTCGATCTTAGAC
* * * *
10351589 ATGGAATGAACTCCCTATGCCTAAGGCAACCCACGAAATGGGCGTACGGGCGCTCAGTCGGTCGG
1 -TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGTCGATCGG
* *
10351654 AGAGGCAGAACGCGTAAGCCAGGGATCGACCCGATCCCTCCTACGTGCTGTTGATCCTGCTATCG
65 AGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCC-CCTACGTGCTGTTGATCCTGCTATCG
*
10351719 CAACCCTCGGTCCGGTTCGATCTTAGAC
129 CAACCCTTGGTCCGGTTCGATCTTAGAC
* * *
10351747 TGGGAATAAACTCTGTATGCCTAAGTCAACCCACAAAAT
1 T-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT
10351786 AAACGTTCGA
Statistics
Matches: 277, Mismatches: 63, Indels: 29
0.75 0.17 0.08
Matches are distributed among these distances:
153 3 0.01
154 5 0.02
155 6 0.02
156 8 0.03
157 78 0.28
158 75 0.27
159 80 0.29
160 7 0.03
161 7 0.03
162 5 0.02
163 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGTCGATCGGA
GAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTACGTGCTGTTGATCCTGCTATCGCA
ACCCTTGGTCCGGTTCGATCTTAGAC
Found at i:10351809 original size:158 final size:156
Alignment explanation
Indices: 10351274--10351852 Score: 479
Period size: 158 Copynumber: 3.7 Consensus size: 156
10351264 TGCATACACA
* * * * * * * * *
10351274 TGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGATCGGG
1 TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTTCGAGCGCTGAGCCGGTCGGA
* * * * * * *
10351339 GAGGCAGAATGTGCAAGCCAGGGACCGGCCTGATCCCCCCTACGTGCTGTCGATCCTGCTACCGT
66 GAGGCAGAATGCGCAAGCCAGGGATCGACCCGAT-CCCCCTACGTGCTGTTGATCCTGCTATCGC
* * *
10351404 AACCGTTGGTTCGGTCCGATCTTAGAC
130 AACCCTTGGTCCGGTTCGATCTTAGAC
* * **
10351431 TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATTC-AGGCGCTGAGCCGACCGG
1 TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTTCGA-GCGCTGAGCCGGTCGG
* ** * *
10351495 AGAGGCATAATGCGCAAGCTGGGGATCGA-CCAAGTCCCCCT-C-TGCATGTTG--CCGGTCTCA
65 AGAGGCAGAATGCGCAAGCCAGGGATCGACCCGA-TCCCCCTACGTGC-TGTTGATCCTG-CT-A
* * * * **
10351555 CTGCCACAACTCTTGGTCCGGCTGGGGCTTAGAC
126 -T--CGCAACCCTTGGTCCGGTTCGATCTTAGAC
* * ** * * * *
10351589 ATGGAATGAACTCCCTATGCCTAAGGCAACCCACGAAATGGGCGTACGGGCGCTCAGTCGGTCGG
1 -TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTTCGAGCGCTGAGCCGGTCGG
* *
10351654 AGAGGCAGAACGCGTAAGCCAGGGATCGACCCGATCCCTCCTACGTGCTGTTGATCCTGCTATCG
65 AGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCC-CCTACGTGCTGTTGATCCTGCTATCG
*
10351719 CAACCCTCGGTCCGGTTCGATCTTAGAC
129 CAACCCTTGGTCCGGTTCGATCTTAGAC
* * * * * *
10351747 TGGGAATAAACTCTGTATGCCTAAGTCAACCCACAAAATAAACGTTCGAGAGATGAGCCGGTCGG
1 T-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTTCGAGCGCTGAGCCGGTCGG
* * ** * *
10351812 AGAGGTATAATGCATAAACC-GAGGATCGGCCCGATCCCCCT
65 AGAGGCAGAATGCGCAAGCCAG-GGATCGACCCGATCCCCCT
10351853 CAGCGTGTTG
Statistics
Matches: 326, Mismatches: 78, Indels: 36
0.74 0.18 0.08
Matches are distributed among these distances:
153 3 0.01
154 5 0.02
155 6 0.02
156 8 0.02
157 81 0.25
158 122 0.37
159 79 0.24
160 7 0.02
161 7 0.02
162 5 0.02
163 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (156 bp):
TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTTCGAGCGCTGAGCCGGTCGGA
GAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTACGTGCTGTTGATCCTGCTATCGCA
ACCCTTGGTCCGGTTCGATCTTAGAC
Found at i:10352179 original size:26 final size:25
Alignment explanation
Indices: 10352150--10352201 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
10352140 TCGGTCCAAT
10352150 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCC-TATG
*
10352176 CTTAGACATGGAATGTACTCCTATG
1 CTTAGACATGGAATGAACTCCTATG
10352201 C
1 C
10352202 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 5 0.21
26 18 0.75
27 1 0.04
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
CTTAGACATGGAATGAACTCCTATG
Found at i:10352348 original size:183 final size:183
Alignment explanation
Indices: 10351992--10352359 Score: 415
Period size: 183 Copynumber: 2.0 Consensus size: 183
10351982 TCCGACTAGG
*
10351992 GCTTAGACATGAAATAAACTCCGTAAGCCTTAGCCAACCCACGAAACGAGCGTGGGAGCGCTCAG
1 GCTTAGACATGAAATAAACTCCGTAAGCCTAAGCCAACCCACGAAACGAGCGTGGGAGCGCTCAG
* * * * * *
10352057 CCAGTCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCTCGGTCCCCCTGCATGCTACAGATCCT
66 CCAGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGATCCCCCTACATGCTACAGATCCT
* * *
10352122 GCTACTGCAACCCTCGGTTCGGTCCAATCTTAGACTGGGAATGAACTCCATAT
131 GCTACTGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCATAT
* ** * *
10352175 GCTTAGACATGGAATGTACTCC-TATGCCTAAGCCAACCCACGAAACGAGTGTGTGG-GCGCTCA
1 GCTTAGACATGAAATAAACTCCGTAAGCCTAAGCCAACCCACGAAACGAGCGTG-GGAGCGCTCA
* * * *
10352238 GTC-GATCGGAGTGGCAGAATGCGCAAG-TAGGGGACCGACCCGATCCCCCCTACGTGCTATC-G
65 GCCAG-TCGGAGAGGCAGAATGCGCAAGCCA-GGGACCGACCCGAT-CCCCCTACATGCTA-CAG
** * ** *
10352300 ATCCTG-TTGTCGCAAGCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
126 ATCCTGCTACT-GCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCATAT
10352358 GC
1 GC
10352360 CTAAGTCAAC
Statistics
Matches: 154, Mismatches: 25, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
181 2 0.01
182 69 0.45
183 82 0.53
184 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (183 bp):
GCTTAGACATGAAATAAACTCCGTAAGCCTAAGCCAACCCACGAAACGAGCGTGGGAGCGCTCAG
CCAGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGATCCCCCTACATGCTACAGATCCT
GCTACTGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCATAT
Found at i:10352544 original size:159 final size:158
Alignment explanation
Indices: 10352175--10352572 Score: 426
Period size: 159 Copynumber: 2.5 Consensus size: 158
10352165 AACTCCATAT
* *
10352175 GCTTAGACATGGAATGTACT-CCTATGCCTAAGCCAACCCACGAAACGAGTGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
** * *
10352239 TCGATCGGAGTGGCAGAATGCGCAAGTAGGGGACCGACCCGATCCCCCCTACGTGCTATCGATCC
66 TCGGCCGGAGAGGCAGAATGCGCAAGTAGGGGACCGACCCGATCCCCCCTACGAGCTATCGATCC
* * * * * *
10352304 TGTTGTCGCAAGCCTCAGTCCGATCTGA
131 CGCTGCCACAACCCTCAGTCCGAGCTGA
* * * * * * *
10352332 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCA
* * * *** ** * *
10352396 GTCGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCGGGTCGATCCCCCTCTGTGAGCTGTCGGT
65 GTCGGCCGGAGAGGCAGAATGCGCAAGTAGGGGACCGACCCGATCCCCC-CTACGAGCTATCGAT
* *
10352461 CCCGCTGCCACAACCCTCAGTCTG-GCTGGG
129 CCCGCTGCCACAACCCTCAGTCCGAGCT-GA
* * *
10352491 GCTTAGACATGGAATGAACTCCCTATGCGTAAGCCAACCCATGAAAC-AGGCGTGTGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTGTGGGCGCTCA
10352555 GTCGGCCGGAGAGGCAGA
65 GTCGGCCGGAGAGGCAGA
10352573 CTGCATAGGT
Statistics
Matches: 193, Mismatches: 42, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
156 1 0.01
157 16 0.08
158 79 0.41
159 96 0.50
160 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.30, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
TCGGCCGGAGAGGCAGAATGCGCAAGTAGGGGACCGACCCGATCCCCCCTACGAGCTATCGATCC
CGCTGCCACAACCCTCAGTCCGAGCTGA
Found at i:10353580 original size:25 final size:26
Alignment explanation
Indices: 10353536--10353587 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
10353526 TCGGTCTAAT
*
10353536 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
10353562 CTTAGACTAGG-ATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
10353587 C
1 C
10353588 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:10354299 original size:26 final size:26
Alignment explanation
Indices: 10354259--10354311 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10354249 GGCTCAAACT
10354259 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
10354285 CTTAGACATGG-AATGAACTCTGTATG
1 CTTAGAC-TGGAAATGAACTCTGTATG
10354311 C
1 C
10354312 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCTGTATG
Found at i:10354710 original size:159 final size:158
Alignment explanation
Indices: 10354284--10354715 Score: 413
Period size: 159 Copynumber: 2.7 Consensus size: 158
10354274 AACTCTGTAT
* * * *
10354284 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
10354349 CCGATCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACC-CGGCCCCCCTGCATGTTGTCGATCT
66 ACGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTAGTCCCCCCTGCATGCTGTCGATCC
* * * *** * * *
10354413 TGCTGTCGCAACCCTTGGTTCGGTTTGA
131 CGCTGCCACAACCCTCAATTAGGCTGGA
* ** * *
10354441 TCTTAGAC-TGGGAATGAACTCCGTATGCAAAAGTCAACCCACGAAACGAGCGTGCTGGCGCT-A
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * *
10354504 AACCAGCTGAAGAGGCATATTGTGCAAGCCGGGGATCAG-CTCGGTCCCCCTCTGCGTGCTGTCG
65 GACGA-CCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCT-AGTCCCCC-CTGCATGCTGTCG
* *
10354568 GTCCCGCTGCCACAACCCTCAATTAGGCTGGG
127 ATCCCGCTGCCACAACCCTCAATTAGGCTGGA
* * *
10354600 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
10354665 TCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTAGTCCCTCCTG
66 ACGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTAGTCCCCCCTG
10354716 TGTGCTACTG
Statistics
Matches: 212, Mismatches: 55, Indels: 15
0.75 0.20 0.05
Matches are distributed among these distances:
156 5 0.02
157 76 0.36
158 9 0.04
159 116 0.55
160 6 0.03
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
ACGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTAGTCCCCCCTGCATGCTGTCGATCC
CGCTGCCACAACCCTCAATTAGGCTGGA
Found at i:10354795 original size:26 final size:26
Alignment explanation
Indices: 10354759--10354811 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10354749 CTGGTTCGAT
*
10354759 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
10354785 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
10354811 C
1 C
10354812 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:10355086 original size:355 final size:360
Alignment explanation
Indices: 10354568--10355227 Score: 804
Period size: 355 Copynumber: 1.8 Consensus size: 360
10354558 CGTGCTGTCG
* **
10354568 GTCCCGCTGCCACAACCCTCAATTAGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
1 GTCCCGCTGCCACAACCCTCAATCAGGCTGGGGCTTAGACATACAATGAACTCCCTATGCCTAAG
* * * * * *
10354633 CCAACCTACGAAACGGGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCGGGGA
66 CCAACCCACAAAACGAGCGTACGGGCGCTCAGTCGACCAGAGAGGCAGAATGCACAAGCCGGGGA
* * *
10354698 TCGGCCTAGTCCCTCCTGTGTGCTACTGATCCTG-CT-G-C-C-GCAACCCTCGGTCTGGT-TCG
131 TCGGCCGAGTCCCTCCTGCGTGCTACTGATCCTGACTGGCCACTGCAACCCTCGGTCTGATCT-G
* * * ** *
10354757 ATCTTAGATTGGGAATGAACTCTATATGCTTAGAC-TGGGGATGAACTCTGTATGCCTAAGTCAA
195 ATCTTAGACTGGGAATGAACTCTATATGCTTAGACAT-GGAATCAACTCCATATGCCTAAGCCAA
10354821 CCCACGAAACGAGCGTACGGGCACTCAG-CGAACCGGAGAGGCATAATGCGCAAGCTCGGGATCA
259 CCCACGAAACGAGCGTACGGGCACTCAGCCG-ACCGGAGAGGCATAATGCGCAAGCTCGGGATCA
10354885 GCCTGATCCCCCTCTGCGTGCTGTCAATCCCGCTACCA
323 GCCTGATCCCCCTCTGCGTGCTGTCAATCCCGCTACCA
* ** **
10354923 GTCCTGCTGCCACAACCCTCGGTCCA-GCTGGGGCTTAGACATACAATGAACTCTGTATGCCTAA
1 GTCCCGCTGCCACAACCCTCAAT-CAGGCTGGGGCTTAGACATACAATGAACTCCCTATGCCTAA
* * * * *
10354987 GCCAACCCACAAAATGAGCGTACGGGTGCTCAGTCGATCAGAGAGGCAGATTGCACAAGTCGGGG
65 GCCAACCCACAAAACGAGCGTACGGGCGCTCAGTCGACCAGAGAGGCAGAATGCACAAGCCGGGG
* *
10355052 ATCGGCTCGA-TCTCC-CCTGCGTGCT-GTCGATCCTGCTACTGGTCCTACTGTTGCAACCCTTG
130 ATCGGC-CGAGTC-CCTCCTGCGTGCTACT-GATCCTG--ACTGG-CC-AC---TGCAACCCTCG
*
10355114 GTCTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATCAACTCCATATGC
185 GTCTGATCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGACATGGAATCAACTCCATATGC
* **
10355179 CTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAG
250 CTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCCGACCGGAGAG
10355228 ACAGAAAGTG
Statistics
Matches: 252, Mismatches: 34, Indels: 26
0.81 0.11 0.08
Matches are distributed among these distances:
354 1 0.00
355 132 0.52
356 5 0.02
358 2 0.01
359 1 0.00
361 1 0.00
363 1 0.00
367 105 0.42
368 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (360 bp):
GTCCCGCTGCCACAACCCTCAATCAGGCTGGGGCTTAGACATACAATGAACTCCCTATGCCTAAG
CCAACCCACAAAACGAGCGTACGGGCGCTCAGTCGACCAGAGAGGCAGAATGCACAAGCCGGGGA
TCGGCCGAGTCCCTCCTGCGTGCTACTGATCCTGACTGGCCACTGCAACCCTCGGTCTGATCTGA
TCTTAGACTGGGAATGAACTCTATATGCTTAGACATGGAATCAACTCCATATGCCTAAGCCAACC
CACGAAACGAGCGTACGGGCACTCAGCCGACCGGAGAGGCATAATGCGCAAGCTCGGGATCAGCC
TGATCCCCCTCTGCGTGCTGTCAATCCCGCTACCA
Found at i:10355177 original size:26 final size:26
Alignment explanation
Indices: 10355126--10355178 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
10355116 CTGATCTGAT
* **
10355126 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATCAACTCCATATG
10355152 CTTAGACAT-GGAATCAACTCCATATG
1 CTTAGAC-TGGGAATCAACTCCATATG
10355178 C
1 C
10355179 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:10355263 original size:367 final size:354
Alignment explanation
Indices: 10354568--10355280 Score: 806
Period size: 367 Copynumber: 2.0 Consensus size: 354
10354558 CGTGCTGTCG
* **
10354568 GTCCCGCTGCCACAACCCTCAATTAGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
1 GTCCCGCTGCCACAACCCTCAATCAGGCTGGGGCTTAGACATACAATGAACTCCCTATGCCTAAG
* * * * * *
10354633 CCAACCTACGAAACGGGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCGGGGA
66 CCAACCCACAAAACGAGCGTACGGGCGCTCAGTCGACCAGAGAGGCAGAATGCACAAGCCGGGGA
* * * *
10354698 TCGGCCTAGTCCCTCCTGTGTGCTACTGATCCTGCTGCCGCAACCCTCGGTCTGGTTCGATCTTA
131 TCGGCCGACTCCCTCCTGTGTGCTACTGATCCTACTGCCGCAACCCTCGGTCTGATTCGATCTTA
* * * ** *
10354763 GATTGGGAATGAACTCTATATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGA
196 GACTGGGAATGAACTCTATATGCTTAGACTGGGAATCAACTCCATATGCCTAAGCCAACCCACGA
* * * * *
10354828 AACGAGCGTACGGGCACTCAGCGAACCGGAGAGGCATAATGCGCAAGCTCGGGATCAGCCTGATC
261 AACGAGCGTACGGGCACTCAGCGAACCGGAGAGACAGAAAGCGCAAACTAGGGATCAGCCTGATC
*
10354893 CCCCTCTGCGTGCTGTCAATCCCGCTACCA
326 CCCC-CTGCATGCTGTCAATCCCGCTACCA
* ** **
10354923 GTCCTGCTGCCACAACCCTCGGTCCA-GCTGGGGCTTAGACATACAATGAACTCTGTATGCCTAA
1 GTCCCGCTGCCACAACCCTCAAT-CAGGCTGGGGCTTAGACATACAATGAACTCCCTATGCCTAA
* * * * *
10354987 GCCAACCCACAAAATGAGCGTACGGGTGCTCAGTCGATCAGAGAGGCAGATTGCACAAGTCGGGG
65 GCCAACCCACAAAACGAGCGTACGGGCGCTCAGTCGACCAGAGAGGCAGAATGCACAAGCCGGGG
* ** *
10355052 ATCGGCTCGATCTCCCCTGCGTGCTGTCGATCCTGCTACTGGTCCTACTGTTGCAACCCTTGGTC
130 ATCGGC-CGA-CT-CCCT-C---CTGT-G----TGCTACTGATCCTACTGCCGCAACCCTCGGTC
*
10355117 TGA-TCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATCAACTCCATATGCC
183 TGATTC-GATCTTAGACTGGGAATGAACTCTATATGCTTAGAC-TGGGAATCAACTCCATATGCC
* ** * *
10355180 TAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCG-ACCGGAGAGACAGAAAGTGTAAACT
246 TAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG-CGAACCGGAGAGACAGAAAGCGCAAACT
* *
10355244 AGGGATCCG-CTCGATCCCCCCTGCATGCTGTCGATCC
310 AGGGATCAGCCT-GATCCCCCCTGCATGCTGTCAATCC
10355281 TACTGCTGCA
Statistics
Matches: 294, Mismatches: 47, Indels: 23
0.81 0.13 0.06
Matches are distributed among these distances:
355 114 0.39
356 3 0.01
357 1 0.00
358 4 0.01
359 1 0.00
362 4 0.01
363 1 0.00
366 19 0.06
367 144 0.49
368 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (354 bp):
GTCCCGCTGCCACAACCCTCAATCAGGCTGGGGCTTAGACATACAATGAACTCCCTATGCCTAAG
CCAACCCACAAAACGAGCGTACGGGCGCTCAGTCGACCAGAGAGGCAGAATGCACAAGCCGGGGA
TCGGCCGACTCCCTCCTGTGTGCTACTGATCCTACTGCCGCAACCCTCGGTCTGATTCGATCTTA
GACTGGGAATGAACTCTATATGCTTAGACTGGGAATCAACTCCATATGCCTAAGCCAACCCACGA
AACGAGCGTACGGGCACTCAGCGAACCGGAGAGACAGAAAGCGCAAACTAGGGATCAGCCTGATC
CCCCCTGCATGCTGTCAATCCCGCTACCA
Found at i:10355626 original size:171 final size:165
Alignment explanation
Indices: 10355151--10355932 Score: 483
Period size: 171 Copynumber: 4.7 Consensus size: 165
10355141 AACTCTGTAT
* * * * * *
10355151 GCTTAGACATGGAATCAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGTGCTCAA
* * * * * ** * * *
10355216 CCGACCGGAGAGACAGAAAGTGTAAACTAGGGATCCG-CTCGATCCCCCCTGCATGCTG------
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGAT-CGACCCGGTCCCCCCTGCGTGCTGCATCTC
* * ** * * * ****
10355274 T-CGATCCTACTGCTGCAACCCTCTATCTGATCCAA
130 TGCGGTCCTGCTGCCACAACCCTCGATCCGGTTGGG
* * * *
10355309 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATACGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGTGCTCA
* * * * * * * *
10355373 GCC-AGTCGGAGAGGCATAATGCACAAGCCGAGGATC-AGCCCGATCCCCCTCTACGTGTTGCTG
65 ACCGA-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCC-CTGCGTGCTGC--
* *
10355436 ATCTCGTTGCCGATCCTGCTACCACAACCCTCGATCCGGTTGGG
125 ATCTC--TG-CGGTCCTGCTGCCACAACCCTCGATCCGGTTGGG
* *
10355480 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGGGCATACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGTGCTCAA
* * * *
10355545 TCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCCTTGCGTGCTGCCAATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCC-TGCGTGCTG-C-AT-
* ** * *
10355610 CTACTGCTGGTCCTGCTGTCGTAACCCTTGATCCGGTCT-GA
127 CT-CTGC-GGTCCTGCTGCCACAACCCTCGATCCGGT-TGGG
* * * * ** *
10355651 TCTTAGA-TTGTGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGTGTGC-GGT-CATT
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGTGC--T
* * * * * * * *
10355713 GAGCTGACCGGAGAGGCATAATGAGCAAGCCGGGGATCGGCCCTGTTCCCCTCTGCGTGCTG---
63 CAACCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCC-GGTCCCCCCTGCGTGCTGCAT
* *
10355775 ---T-CGGTCCCGCTGCCACAACCCTCGATCCGGCTGGG
127 CTCTGCGGTCCTGCTGCCACAACCCTCGATCCGGTTGGG
* * * * * * * * ** *
10355810 GCTTAGACATGGAATGAAGTCCCTATGCCTAAGCCAACCCACGAAATGGGCTTGCTGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGTGCTCAA
* *
10355875 CCGACCGGAGAGGCAGAATACGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTG
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTG
10355933 TCGATCCTGC
Statistics
Matches: 480, Mismatches: 110, Indels: 68
0.73 0.17 0.10
Matches are distributed among these distances:
157 3 0.01
158 101 0.21
159 110 0.23
160 5 0.01
161 2 0.00
169 2 0.00
170 7 0.01
171 236 0.49
172 13 0.03
173 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (165 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGTGCTCAA
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCATCTCT
GCGGTCCTGCTGCCACAACCCTCGATCCGGTTGGG
Found at i:10356005 original size:26 final size:26
Alignment explanation
Indices: 10355969--10356024 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
10355959 CTGGTCTGAT
*
10355969 CTTAGACTGGGAATGAACTTCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
* *
10355995 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTAAG
10356021 CTTA
1 CTTA
10356025 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:10356730 original size:26 final size:26
Alignment explanation
Indices: 10356692--10356744 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10356682 GGCTCAAAAT
10356692 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
10356718 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
10356744 C
1 C
10356745 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:10357040 original size:159 final size:158
Alignment explanation
Indices: 10356877--10357169 Score: 340
Period size: 159 Copynumber: 1.8 Consensus size: 158
10356867 CTAGTCCAAT
* * * *
10356877 CTTAGAC-TACGAATGAACTCCATAT-CCATAAGTCAACCCATAAAAC-GAGCGTGCGGGCGCTG
1 CTTAGACAT-CGAATGAACTCCATATGCC-TAAGCCAACCCATAAAACAG-GCGTGCAGACGCTC
* * * * * * * *
10356939 AGCCGGCCGAAGAGGCATAATGCGCAAGACGGGGATCGGCTCGGTCACCCTCTGTGTGCTACCGG
63 AGCCGACCGAAGAGGCAGAACGCGCAAGACGGGGATCAGCCCGATC-CCCCCTGTGTGCTACCGA
10357004 TCCCGCTGCCACAGCCCTTGGTCCGGCCGGGG
127 TCCCGCTGCCACAGCCCTTGGTCCGGCCGGGG
* * * *
10357036 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGTAGACGCTCAGC
1 CTTAGACATCGAATGAACTCCATATGCCTAAGCCAACCCATAAAACAGGCGTGCAGACGCTCAGC
* * * * *
10357101 TGATCGGAGAGGCAGAACGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGTGTGCTACCGATCCT
66 CGACCGAAGAGGCAGAACGCGCAAGACGGGGATCAGCCCGATCCCCCCTGTGTGCTACCGATCCC
10357166 GCTG
131 GCTG
10357170 TCGCAACCCT
Statistics
Matches: 110, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
158 23 0.21
159 83 0.75
160 4 0.04
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.17
Consensus pattern (158 bp):
CTTAGACATCGAATGAACTCCATATGCCTAAGCCAACCCATAAAACAGGCGTGCAGACGCTCAGC
CGACCGAAGAGGCAGAACGCGCAAGACGGGGATCAGCCCGATCCCCCCTGTGTGCTACCGATCCC
GCTGCCACAGCCCTTGGTCCGGCCGGGG
Found at i:10357223 original size:26 final size:26
Alignment explanation
Indices: 10357194--10357246 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10357184 CTGATTCGAT
*
10357194 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
10357220 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
10357246 C
1 C
10357247 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:10358090 original size:26 final size:26
Alignment explanation
Indices: 10358061--10358113 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10358051 CCGATCCGAT
*
10358061 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
10358087 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
10358113 C
1 C
10358114 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:10358211 original size:183 final size:183
Alignment explanation
Indices: 10357903--10358369 Score: 711
Period size: 183 Copynumber: 2.6 Consensus size: 183
10357893 TTTGGCTGGG
* * * * * ** *
10357903 GCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCGTGAAAC-AGGCGTGTGGGCGCTCA
1 GCTTAGACTGGGGATGAACTCCATATGCCTATGTCAACCCACGAAACGA-GCGTGCGGGCGCTCA
* * *
10357967 GTCGATCAGAGAGGCAGAATGCGCAAGTCGAAGATCGGCTAGGTCCCTCCTCCTACTGTCGATCC
65 GTCGACCAGAGAGACAGAATGCGCAAGTCGAAGATCGGCCAGGTCCCTCCTCCTACTGTCGATCC
* *
10358032 TGCTGCCGCAACCTTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTAT
130 TGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTAT
10358086 GCTTAGACTGGGGATGAACTCCATATGCCTATGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGGATGAACTCCATATGCCTATGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
10358151 TCGACCAGAGAGACAGAATGCGCAAGTCGAAGATTGGCCCGGTCCCTCCTCCTGCTGTCGATCCT
66 TCGACCAGAGAGACAGAATGCGCAAGTCGAAGATCGGCCAGGTCCCTCCTCCTACTGTCGATCCT
* * *
10358216 GCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCTGTAT
131 GCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTAT
10358269 GCTTAGACTGGGGATGAACTCCATATGCCTATGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGGATGAACTCCATATGCCTATGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
10358334 TCGACCAGAGAGACAGGATGCACAAGCCGAGGATCG
66 TCGACCAGAGAGACAGAATGCGCAAGTCGAAGATCG
10358370 AACGGGTGGT
Statistics
Matches: 259, Mismatches: 24, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
183 258 1.00
184 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (183 bp):
GCTTAGACTGGGGATGAACTCCATATGCCTATGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGACCAGAGAGACAGAATGCGCAAGTCGAAGATCGGCCAGGTCCCTCCTCCTACTGTCGATCCT
GCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:10358295 original size:26 final size:26
Alignment explanation
Indices: 10358244--10358296 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10358234 CCGGTCTGAT
**
10358244 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
10358270 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
10358296 C
1 C
10358297 CTATGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:10359851 original size:26 final size:26
Alignment explanation
Indices: 10359813--10359865 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10359803 CCGGTCTGAT
* *
10359813 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
10359839 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
10359865 C
1 C
10359866 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:10367328 original size:26 final size:26
Alignment explanation
Indices: 10367299--10367351 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10367289 CCGGTCCGAT
*
10367299 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
10367325 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
10367351 C
1 C
10367352 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:10367619 original size:159 final size:157
Alignment explanation
Indices: 10367325--10367828 Score: 528
Period size: 159 Copynumber: 3.2 Consensus size: 157
10367315 ACTCCGTATG
* * *
10367325 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTTAGC
1 CTTAGA-ATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
* * * * * *
10367390 CGGTCGGAGAGGCAGAATGCACAAGTCAGGGATCGTCCCGATCCCCCCCTGCATGCTGTCGATCT
65 TGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGT-CCCCCCTGCATGCTGTCGATCC
* *
10367455 TGCTGCTGTAACCCTCGATCCGGTCCGAT
129 TGCTGCCGCAACCCTCGATCCGGTCCGAT
* * * * * *
10367484 CTTAGATTGAGATTGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGAATG-GAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
** * * * * *
10367549 TGGTCGGAGAACCATAATGCGCAAACCGGGGATCAACCCGGTCCCCCTCTGCATGCTGTCGGTCC
65 TGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCC-CTGCATGCTGTCGATCC
* * * *
10367614 CGCTGCCACAACCCTC-AGTCCGG-CTGGAG
129 TGCTGCCGCAACCCTCGA-TCCGGTC-CGAT
* * * * * *
10367643 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCATCCCATGAAACGGGCATACAGGCGCTCAAC
1 CTTAGA-ATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
* * * *
10367708 T-GACTAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCCGGTCCCCCCTGCGTGCTGTCGATC
65 TGGTC-GGAGAGGCAGAATGCGCAAGCCAGGGATC-GACCCGGTCCCCCCTGCATGCTGTCGATC
* *
10367772 CTGCTGCCGCAACCCTCGATCTGGTCTGAT
128 CTGCTGCCGCAACCCTCGATCCGGTCCGAT
*
10367802 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGAAT-GGAATGAACTCCATATGC
10367829 TTAGACTGGG
Statistics
Matches: 279, Mismatches: 56, Indels: 20
0.79 0.16 0.06
Matches are distributed among these distances:
158 12 0.04
159 252 0.90
160 15 0.05
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGAATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCT
GGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCTG
CTGCCGCAACCCTCGATCCGGTCCGAT
Found at i:10374486 original size:26 final size:26
Alignment explanation
Indices: 10374447--10374496 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
10374437 GGCTCAAAAT
10374447 CTTAGACTGCGAATGAACTCTGTACG
1 CTTAGACTGCGAATGAACTCTGTACG
*
10374473 CTTAGACATG-GAATTAACTCTGTA
1 CTTAGAC-TGCGAATGAACTCTGTA
10374497 TGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCTGTACG
Found at i:10374967 original size:26 final size:26
Alignment explanation
Indices: 10374928--10374981 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
10374918 GATCTGATCT
*
10374928 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATCCC
* *
10374954 TAGATTGGGGATGAACTCCGTATCCC
1 TAGACTGGGAATGAACTCCGTATCCC
10374980 TA
1 TA
10374982 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATCCC
Found at i:10375711 original size:159 final size:158
Alignment explanation
Indices: 10375330--10375820 Score: 436
Period size: 158 Copynumber: 3.1 Consensus size: 158
10375320 TTAGACATGC
* * * ** ** *
10375330 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGTGCTCAGTCAACCGAAA-A
1 AATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTACAGGCACTCAACCGACC-AAAGA
* * * * ** * * ** **
10375394 GGCAGAATGTGCAAGTCGGGGATCGACCCGGTCCCCCCTGTATGCTATCGATCCTGCTTTCGCAA
65 GGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTACTACCGATCCTGCTACCATAA
* ** ** *
10375459 CCCCCGGTCC-AATCCGATCTTAGACTAGG
130 CCCTCGGTCCGGCTAGGGT-TTAGACTAGG
* * * * * * * *
10375488 AATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGGCCGAAGAG
1 AATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTACAGGCACTCAACCGACCAAAGAG
* * * * *
10375553 GCATAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTCTGCGTACTGCTGGTCCCT-CTACCATA
66 GCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCC-CTGCGTACTACCGAT-CCTGCTACCATA
10375617 ACCCTCGGTCCGGCTAGGGTTTAGAC-ATGG
129 ACCCTCGGTCCGGCTAGGGTTTAGACTA-GG
* * * *
10375647 AATGAACTCCTTATGCCTAAGCCAACCCACGAAATGGGCGTACAGGCACTCAACCGACCAAAGAG
1 AATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTACAGGCACTCAACCGACCAAAGAG
* * *
10375712 GCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCCTGCTGCCATAAC
66 GCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTACTACCGATCCTGCTACCATAAC
* * *
10375777 CCTCGGTCCGGTCT--GATCTTAAACTGGG
131 CCTCGGTCCGG-CTAGGGT-TTAGACTAGG
10375805 AATGAACTCCGTATGC
1 AATGAACTCCGTATGC
10375821 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 54, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
157 7 0.03
158 139 0.51
159 118 0.44
160 6 0.02
ACGTcount: A:0.24, C:0.32, G:0.25, T:0.18
Consensus pattern (158 bp):
AATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTACAGGCACTCAACCGACCAAAGAG
GCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTACTACCGATCCTGCTACCATAAC
CCTCGGTCCGGCTAGGGTTTAGACTAGG
Found at i:10375823 original size:26 final size:26
Alignment explanation
Indices: 10375794--10375846 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10375784 CCGGTCTGAT
10375794 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* * *
10375820 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
10375846 C
1 C
10375847 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:10376175 original size:354 final size:342
Alignment explanation
Indices: 10375477--10376200 Score: 837
Period size: 354 Copynumber: 2.1 Consensus size: 342
10375467 CCAATCCGAT
*
10375477 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
10375542 CGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTCTGCGTACTGCTGGTCC
65 AGACCGAAGAGGCATAATGCACAAGCCAGAGATCGACCCGATCCCCCTCTGCGTACCGCTGGTCC
* * * *
10375607 CTCTACCATAACCCTCGGTCCGGCTAGGGTTTAGACATGGAATGAACTCCTTATGCCTAAGCCAA
130 CTCTACCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
***
10375672 CCCACGAAATGGGCGTACAGGCACTCAACCGACCAAAGAGGCAGAATGCGCAAGCCAGGGATCGG
195 CCCACGAAACAAGCGTACAGGCACTCAACCGACCAAAGAGGCAGAATGCGCAAGCCAGGGATCGG
* * * * * *
10375737 CCCGATCCCCCCTGCGTGCTACCGATCCTGCTGCCATAACCCTCGGTCCGGTCTGATCTTAAACT
260 CCCGATCCCCACTACGTGCTACCGATCCTGCTGCCACAACCATCGGTCCGATCCGATCTTAAACT
10375802 GGGAATGAACTCCGTATG
325 GGGAATGAACTCCGTATG
* * *
10375820 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACT-GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*
10375885 AGACCGGAGAGGCATAATGCACAAGCC-GAAGATC-AGCCCGATCCCTCTCTGCGTGTTGTCGAT
65 AGACCGAAGAGGCATAATGCACAAGCCAG-AGATCGA-CCCGATCCC-C-CT-C----TG-CG-T
* * *
10375948 CCCGCTACCGGT-CCTGCTACCACAACCCTCTATCCGGCTGGGGCTTAGACATGGAATGAACTCC
119 ACCGCT---GGTCCCT-CTACCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCC
* ** * * * ** * *
10376012 GTATGTCTAAGCC-ACCCACGAAACAAGCGTATGGGCCCTTAGA-TGACCGGAGAGGTAGAATGT
180 GTATGCCTAAGCCAACCCACGAAACAAGCGTACAGGCACTCA-ACCGACCAAAGAGGCAGAATGC
** * ** *
10376075 GCAAGCTGGGGATCGGCCCGGTCCCCACTACGTGCTGTCGATCCTGCTGCCACAACCATCGGTCT
244 GCAAGCCAGGGATCGGCCCGATCCCCACTACGTGCTACCGATCCTGCTGCCACAACCATCGGTCC
* *
10376140 GATCCGATCTTAGACTGGGAATGAACTCTGTATG
309 GATCCGATCTTAAACTGGGAATGAACTCCGTATG
10376174 CTTAGACATGGAATGAACTCCGTATGC
1 CTTAGAC-TGGAATGAACTCCGTATGC
10376201 TTAGACAGGG
Statistics
Matches: 316, Mismatches: 48, Indels: 23
0.82 0.12 0.06
Matches are distributed among these distances:
342 2 0.01
343 95 0.30
344 1 0.00
345 2 0.01
346 1 0.00
350 2 0.01
351 2 0.01
352 5 0.02
354 147 0.47
355 59 0.19
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (342 bp):
CTTAGACTGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCA
GACCGAAGAGGCATAATGCACAAGCCAGAGATCGACCCGATCCCCCTCTGCGTACCGCTGGTCCC
TCTACCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACAAGCGTACAGGCACTCAACCGACCAAAGAGGCAGAATGCGCAAGCCAGGGATCGGC
CCGATCCCCACTACGTGCTACCGATCCTGCTGCCACAACCATCGGTCCGATCCGATCTTAAACTG
GGAATGAACTCCGTATG
Found at i:10376177 original size:26 final size:26
Alignment explanation
Indices: 10376148--10376226 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
10376138 CTGATCCGAT
*
10376148 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10376174 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
*
10376200 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10376226 C
1 C
10376227 CTAATCCAAC
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
26 48 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10376365 original size:214 final size:209
Alignment explanation
Indices: 10375990--10376388 Score: 541
Period size: 214 Copynumber: 1.9 Consensus size: 209
10375980 TCCGGCTGGG
* * * * *
10375990 GCTTAGACATGGAATGAACTCCGTATGTCTAAGCCACCCACGAAACAAGCGTATGGGCCCTTAGA
1 GCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCACCCACGAAACAAGCGTACGGGCACTCAGA
* * * * * *
10376055 TGACCGGAGAGGTAGAATGTGCAAGCTGGGGATCGGCCCGGTCCCCACTACGTGCTGTCGATCCT
66 TGACCAGAGAGGCAGAATGCGCAAGCCGGGGACCGGCCCGATCCCCACTACGTGCTGTCGATCCT
**
10376120 GCTGCCACAACCATCGGTCTGATCCGATCTTAGACTGGGAATGAAC-TCTGTATGCTTAGACATG
131 GCTGCCACAACCATCGGTCCAATCCGATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACATG
10376184 GAATGAACTCCGTAT
195 GAATGAACTCCGTAT
* *
10376199 GCTTAGACAGGGAATGAACTCCGTATGCCTAATCCAACCCATGAAACAAGCGTGCACGCGGGCAC
1 GCTTAGACAGGGAATGAACTCCGTATGCCTAAGCC-ACCCACGAAACAAGCGT--A--CGGGCAC
* * *
10376264 TCAGCT-AGCCAGAGAGGCAGAATGCGCAAGCCGGGGACCGGCCTGATCCCCCCTACGTGCTGTC
61 TCAGATGA-CCAGAGAGGCAGAATGCGCAAGCCGGGGACCGGCCCGATCCCCACTACGTGCTGTC
* *
10376328 GATCCTGCTGCCACAACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTTCGTATGC
125 GATCCTGCTGCCACAACCATCGGTCCAATCCGATCTTAGACTGGGAATGAACTTCGTATGC
10376389 CTAAGTTAAC
Statistics
Matches: 163, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
209 32 0.20
210 16 0.10
212 1 0.01
213 1 0.01
214 111 0.68
215 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (209 bp):
GCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCACCCACGAAACAAGCGTACGGGCACTCAGA
TGACCAGAGAGGCAGAATGCGCAAGCCGGGGACCGGCCCGATCCCCACTACGTGCTGTCGATCCT
GCTGCCACAACCATCGGTCCAATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGG
AATGAACTCCGTAT
Found at i:10376526 original size:159 final size:159
Alignment explanation
Indices: 10376200--10376664 Score: 398
Period size: 159 Copynumber: 2.9 Consensus size: 159
10376190 ACTCCGTATG
* * * * * * *
10376200 CTTAGACAGGGAATGAACTCCGTATGCCTAATCCAACCCATGAAACAAGCGTGCACGCGGGCACT
1 CTTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCACGAAAC-A--G-GCATGCAGGCACT
* ** * * * *
10376265 CAG-CTAGCCAGAGAGGCAGAATGCGCAAGCCGGGGA-CCGGCCT-GATCCCCC-CTACGTGCTG
62 CAGCCGA-CTGGAGAGGTAGAATGCACAAGCTGGGGATCC-ACCTAG-TCCCCCTCTACGTGCTG
**
10376326 TCGATCCTGCTGCCACAACCCTCGGTCCAATCTGAT
124 TCGATCCCACTGCCACAACCCTCGGTCCAATCTGAT
* * * ** * *
10376362 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTTAACCCACGAAAC-GAGCGTGCAGGCACTGA
1 CTTAGACAT-GGAATGAACTCCCTATCCCTAAGCCAACCCACGAAACAG-GCATGCAGGCACTCA
*
10376425 GCCGA-TCGGAGAGGTAGAATGC-CTAAGCTGGGGATCCATCC-GGTCCCCCTCTACGTGCTGTC
64 GCCGACT-GGAGAGGTAGAATGCAC-AAGCTGGGGATCCA-CCTAGTCCCCCTCTACGTGCTGTC
*
10376487 -AGTCCCACTGCCACAACCCTCGGTCCGA-CT-AT
126 GA-TCCCACTGCCACAACCCTCGGTCCAATCTGAT
* **
10376519 GGCTTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCACGAAACAGGCATGCGGGTGCTCA
1 --CTTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCACGAAACAGGCATGCAGGCACTCA
* * *
10376584 GTCGACTGGAGAGGTAGAATGCACAAGCTGGGGATCGACCTAGT-CCCCTCTGCGTGCTGTCGAT
64 GCCGACTGGAGAGGTAGAATGCACAAGCTGGGGATCCACCTAGTCCCCCTCTACGTGCTGTCGAT
** *
10376648 CCTTCTGTCACAACCCT
129 CCCACTGCCACAACCCT
10376665 TAGTTTGGTC
Statistics
Matches: 249, Mismatches: 37, Indels: 38
0.77 0.11 0.12
Matches are distributed among these distances:
157 3 0.01
158 77 0.31
159 126 0.51
160 4 0.02
162 39 0.16
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCACGAAACAGGCATGCAGGCACTCAGC
CGACTGGAGAGGTAGAATGCACAAGCTGGGGATCCACCTAGTCCCCCTCTACGTGCTGTCGATCC
CACTGCCACAACCCTCGGTCCAATCTGAT
Found at i:10377804 original size:160 final size:158
Alignment explanation
Indices: 10377426--10377865 Score: 404
Period size: 159 Copynumber: 2.8 Consensus size: 158
10377416 AACTCCGTAT
* * * *
10377426 GCTTAGACATGGAATGAACTCCGTTTGCCAAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACAGGCGTGCGGGCGCTCAG
* * * * * * *
10377491 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCTCCTACGTGCTATCAATC
66 CCAACCGAAGAGGCAGAATACGCAAGCCGAGGATCGACCCGGTCCCCTCCTACGTGCTACCAATC
* * * * **
10377556 TGCTGCTATGAATCTTGGTCCGGTTCGA
131 CGCTGCCATCAACCTCAGTCCGGTTCGA
* * * * *
10377584 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAAC-GAGCATGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGACAACCCACGAAACAG-GCGTGCGGGCGCTC
* * * *
10377647 AGTCAACCTGAAGAGGCATAATACGCAAGTCGAGGATCGACCCGGTCCCC-CTCTGCGTGCTACC
64 AGCCAACC-GAAGAGGCAGAATACGCAAGCCGAGGATCGACCCGGTCCCCTC-CTACGTGCTACC
** * * *
10377711 GGTCCCGCTGCCA-CAACCCTCAGTCCGTTTGGG
127 AAT-CCGCTGCCATCAA-CCTCAGTCCGGTTCGA
* * *
10377744 GCTTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCACGAAACAGGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACAGGCGTGCGGGCGCTCAG
*** * * * * * *
10377809 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCTGATCCCC-CCTACGTGCT
66 CCAACCGAAGAGGCAGAATACGCAAGCCGAGGATCGACCCGGTCCCCTCCTACGTGCT
10377866 GCCGATCCTG
Statistics
Matches: 223, Mismatches: 51, Indels: 16
0.77 0.18 0.06
Matches are distributed among these distances:
157 1 0.00
158 67 0.30
159 81 0.36
160 72 0.32
161 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACAGGCGTGCGGGCGCTCAG
CCAACCGAAGAGGCAGAATACGCAAGCCGAGGATCGACCCGGTCCCCTCCTACGTGCTACCAATC
CGCTGCCATCAACCTCAGTCCGGTTCGA
Found at i:10377929 original size:158 final size:156
Alignment explanation
Indices: 10377427--10377929 Score: 466
Period size: 158 Copynumber: 3.2 Consensus size: 156
10377417 ACTCCGTATG
* * * * *
10377427 CTTAGACATGGAATGAACTCCGTTTGCCAAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACAGGCGTGCGGGCGCTCAAC
* * * *
10377492 CAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCTCCTACGTGCTATCAATCT
66 C-GTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCC-CCTACGTGCTACCGATC-
* *
10377557 GCTGCTA-TG-AA-TCTTGGTCCGGTTCGAT
128 -CTGCTACTGCAACCCTCGGTCC-GTTCGAT
* * *
10377585 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAAC-GAGCATGCGGGCGCTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGACAACCCACGAAACAG-GCGTGCGGGCGC---
* * * * * * *
10377648 GTCAACC-T-GAAGAGGCATAATACGCAAGTCGAGGATCGACCCGGTCCCCCTCTGCGTGCTACC
61 -TCAACCGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCC-CTACGTGCTACC
* * * ** * * **
10377711 GGTCCCGCTGCCACAACCCTCAGTCCGTTTGGGG
124 GATCCTGCTACTGCAACCCTCGGTCCG-TTCGAT
* *
10377745 CTTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCACGAAACAGGCGTACGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACAGGCGTGCGGGCGCTCAAC
* * *
10377810 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCTGATCCCCCCTACGTGCTGCCGATCCT
66 C-GTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCCTACGTGCTACCGATCCT
10377875 GCTACTGCAACCCTCGGTCCAG-TCTGAT
130 GCTACTGCAACCCTCGGTCC-GTTC-GAT
*
10377903 CTTAGA-ATGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
10377930 TTAGACTAGG
Statistics
Matches: 271, Mismatches: 55, Indels: 38
0.74 0.15 0.10
Matches are distributed among these distances:
156 6 0.02
157 8 0.03
158 106 0.39
159 84 0.31
160 60 0.22
161 2 0.01
162 5 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACAGGCGTGCGGGCGCTCAAC
CGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCCTACGTGCTACCGATCCTG
CTACTGCAACCCTCGGTCCGTTCGAT
Found at i:10377932 original size:26 final size:26
Alignment explanation
Indices: 10377903--10377955 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10377893 CCAGTCTGAT
*
10377903 CTTAGAAT-GGGAATGAACTCTGTATG
1 CTTAGAATAGGG-ATGAACTCCGTATG
*
10377929 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGAATAGGGATGAACTCCGTATG
10377955 C
1 C
10377956 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATAGGGATGAACTCCGTATG
Found at i:10378287 original size:26 final size:26
Alignment explanation
Indices: 10378258--10378310 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10378248 CCGGTCCAAT
10378258 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
* *
10378284 CTTAGACATGGATTGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10378310 C
1 C
10378311 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10378375 original size:355 final size:354
Alignment explanation
Indices: 10377723--10378412 Score: 841
Period size: 355 Copynumber: 1.9 Consensus size: 354
10377713 TCCCGCTGCC
* *
10377723 ACAACCCTCAGTCCGTTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCACGA
1 ACAACCCTCAGTCCGATTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCACGA
* * * ***
10377788 AACAGGCGTACGGGCGCTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCTGATC
66 AACAGGCGTACGAGCGCTCAACCGGTCAGAGAGGCAGAATGCACAAGCCAAAGACCGACCTGATC
* * **
10377853 CCCCCTACGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCAGTCTGATCTTAGAATGGGAATG
131 CCCCCTACGTACTGCCGATCCTACTACTGCAACCCTCGGTCCAGTCCAATCTTAGAATGGGAATG
* * * **
10377918 AACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCTACGAAATGAGCGTAC
196 AACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTAC
* * * * * * *
10377983 GGGCGCTTAGCTGGTCGGAGAGATATAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGT
261 GGGCGCTTAGCCGATCAGAAAGACAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCC-CTACGT
10378048 GCTGTCGATCCCGCTGTCGGTCCTACTACG
325 GCTGTCGATCCCGCTGTCGGTCCTACTACG
* * *
10378078 ACAACCCTCGGTCCGATTGGGACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
1 ACAACCCTCAGTCCGATTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCACGA
* * ** *
10378143 AAC-GCGCGTGCGAGCGGTCAGTCGGTCAGAGAGGCAGAATGCACAAGCCAAAGATCG-CCTCGA
66 AACAG-GCGTACGAGCGCTCAACCGGTCAGAGAGGCAGAATGCACAAGCCAAAGACCGACCT-GA
* * * * * *
10378206 TCCCCCTTGCGTACTGTCGATCCTACT-GTCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGA
129 TCCCCCCTACGTACTGCCGATCCTACTACT-GCAACCCTCGGTCCAGTCCAATCTTAGAATGGGA
* * * * *
10378270 ATGAACTCCGTATGCTTAGAC-ATGGATTGAACTTCGTATGCCTAAGCCAACCCATGACACAAGT
193 ATGAACTCCGTATGCTTAGACTAGGGA-TGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGC
* * * * * * *
10378334 GTGCGGGCG-TTCAGCCGATCAGAAAGGCAGAATGTGCAAGCCGGGGATCGGTCCGGTCCCCCCT
257 GTACGGGCGCTT-AGCCGATCAGAAAGACAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCT
10378398 ACGTGCTGTCGATCC
321 ACGTGCTGTCGATCC
10378413 TGCTACCGTA
Statistics
Matches: 280, Mismatches: 50, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
354 27 0.10
355 253 0.90
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (354 bp):
ACAACCCTCAGTCCGATTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGACAACCCACGA
AACAGGCGTACGAGCGCTCAACCGGTCAGAGAGGCAGAATGCACAAGCCAAAGACCGACCTGATC
CCCCCTACGTACTGCCGATCCTACTACTGCAACCCTCGGTCCAGTCCAATCTTAGAATGGGAATG
AACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTAC
GGGCGCTTAGCCGATCAGAAAGACAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTACGTG
CTGTCGATCCCGCTGTCGGTCCTACTACG
Found at i:10378409 original size:184 final size:184
Alignment explanation
Indices: 10378100--10378468 Score: 434
Period size: 184 Copynumber: 2.0 Consensus size: 184
10378090 CCGATTGGGA
** *
10378100 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGCGCGTGCGAGCGGTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGAGCGGTCAGC
* * * *
10378165 CGGTCAGAGAGGCAGAATGCACAAGCCAAAGATCGCCTCGATCCCCCTTGCGTACTGTCGATCCT
66 CGATCAGAAAGGCAGAATGCACAAGCCAAAGATCGCCTCGATCCCCCCTACGTACTGTCGATCCT
** * *
10378230 ACTGTCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
131 ACTACCGCAACCCTCGGTCCGGTCCAATCTTACACTGGGAATAAACTCCGTATG
* * * * * * *
10378284 CTTAGACATGGATTGAACTTCGTATGCCTAAGCCAACCCATGACACAAGTGTGCGGGCGTTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGAGCGGTCAGC
** *** * * *
10378349 CGATCAGAAAGGCAGAATGTGCAAGCCGGGGATCG-GTCCGGTCCCCCCTACGTGCTGTCGATCC
66 CGATCAGAAAGGCAGAATGCACAAGCCAAAGATCGCCT-CGATCCCCCCTACGTACTGTCGATCC
* * * * **
10378413 TGCTACCGTAACCCTTGGTCTGGTCTGATCTTACACTGGGAATAAACTCCGTATG
130 TACTACCGCAACCCTCGGTCCGGTCCAATCTTACACTGGGAATAAACTCCGTATG
10378468 C
1 C
10378469 CTAAGTCAAC
Statistics
Matches: 152, Mismatches: 32, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
183 1 0.01
184 151 0.99
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.21
Consensus pattern (184 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGAGCGGTCAGC
CGATCAGAAAGGCAGAATGCACAAGCCAAAGATCGCCTCGATCCCCCCTACGTACTGTCGATCCT
ACTACCGCAACCCTCGGTCCGGTCCAATCTTACACTGGGAATAAACTCCGTATG
Found at i:10378658 original size:159 final size:158
Alignment explanation
Indices: 10378283--10378646 Score: 392
Period size: 158 Copynumber: 2.3 Consensus size: 158
10378273 AACTCCGTAT
* * * * **
10378283 GCTTAGACATGGATTGAACTTCGTATGCCTAAGCCAACCCATGACACAAGTGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAG
* ** *
10378348 CCGATCAGAAAGGCAGAATGTGCAAGCCGGGGATCGGTCCGGTCCCCCCTACGTGCTGTCGATCC
66 CCGATCAGAAAGGCAGAATGCGCAAGCCGGGGATCACTCCGGTCCCCCCTACATGCTGTCGATCC
* ** *
10378413 TGCTACCGTAACCCTTGGTCTGGTCTGA
131 CGCTACCACAACCCTCGGTCTGGTCTGA
* * * * * *
10378441 TCTTACAC-TGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAATAAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCA
* * * * * * * *
10378505 GCCGGTCGGAGAGGCATAATGCGTAAGCCGGGGATCAACT-CGGTCCCCCTTTGCATGCTGTCGG
65 GCCGATCAGAAAGGCAGAATGCGCAAGCCGGGGATC-ACTCCGGTCCCCC-CTACATGCTGTCGA
* *
10378569 TCCCGCTGCCACAACCCTCGGTCT-GTCTGGG
128 TCCCGCTACCACAACCCTCGGTCTGGTCT-GA
*
10378600 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC
10378647 GGGCATGCGG
Statistics
Matches: 165, Mismatches: 36, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.01
158 93 0.56
159 70 0.42
160 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAG
CCGATCAGAAAGGCAGAATGCGCAAGCCGGGGATCACTCCGGTCCCCCCTACATGCTGTCGATCC
CGCTACCACAACCCTCGGTCTGGTCTGA
Found at i:10378674 original size:159 final size:158
Alignment explanation
Indices: 10378283--10378714 Score: 413
Period size: 159 Copynumber: 2.7 Consensus size: 158
10378273 AACTCCGTAT
* * * * *
10378283 GCTTAGACATGGATTGAACTTCGTATGCCTAAGCCAACCCATGACACAAGTGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAG
* * * * ** *
10378348 CCGATCAGAAAGGCAGAATGTGCAAGCCGGGGATCGGTCCGGTCCCCCCTACGTGCTGTCGATCC
66 CCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCACTCCGGTCCCCCCTACATGCTGTCGATCC
* ** *
10378413 TGCTACCGTAACCCTTGGTCTGGTCTGA
131 CGCTACCACAACCCTCGGTCTGGTCTGA
* * * * * * *
10378441 TCTTACAC-TGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAATAAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCA
* * * * * *
10378505 GCCGGTCGGAGAGGCATAATGCGTAAGCCGGGGATCAACT-CGGTCCCCCTTTGCATGCTGTCGG
65 GCCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATC-ACTCCGGTCCCCC-CTACATGCTGTCGA
* *
10378569 TCCCGCTGCCACAACCCTCGGTCT-GTCTGGG
128 TCCCGCTACCACAACCCTCGGTCTGGTCT-GA
* ** * *
10378600 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAG
* * * * * *
10378665 CCAACCGGAGAGGCAAAATGCACAAGTCGAGGATCGAC-CCAGTCCCCCCT
66 CCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATC-ACTCCGGTCCCCCCT
10378715 GCGTGCTACC
Statistics
Matches: 215, Mismatches: 53, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
157 1 0.00
158 94 0.44
159 119 0.55
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAG
CCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCACTCCGGTCCCCCCTACATGCTGTCGATCC
CGCTACCACAACCCTCGGTCTGGTCTGA
Found at i:10380514 original size:159 final size:158
Alignment explanation
Indices: 10380161--10380694 Score: 524
Period size: 158 Copynumber: 3.4 Consensus size: 158
10380151 CCGCTGCCGG
* * * *
10380161 TCCTGCTGTCACAACCCTCGATCCGAT-TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
1 TCCTGCTGCCACAACCCTCGGTCCGGTCT-GAGCTTAGACATGGAATGAACTCCGTATGCCTAAG
* * * * * *
10380225 CCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGA
65 -TAACCCACGAAACGAGCGTGCAGACGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCGGGGA
* * * *
10380290 TCGACCCGAT-CCCCTTTACGTGCTATTGA
129 TCGACCCGGTCCCCCTCTGCGTGCTACTGA
* ** ** * *
10380319 TCCTGCTACTGCAACCCTCGGTCCGGTCCAATCTTAGGC-TGGGAATGAACTCCGTATGCCTAAG
1 TCCTGCTGCCACAACCCTCGGTCCGGTCTGAGCTTAGACAT-GGAATGAACTCCGTATGCCTAAG
* * * * *
10380383 TAAACCCACGAAAACGAGCGTGCAGACGCTGAGCCGGTCGGAGAGGCATAGTGCACAAGCCAGGG
65 T-AACCCACG-AAACGAGCGTGCAGACGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCGGGG
* *
10380448 ATCGGCTCGGTCCCCCTCTGCGTGCTACTGA
128 ATCGACCCGGTCCCCCTCTGCGTGCTACTGA
* * * *
10380479 TCCCGCTGCCACAACCCTCAGTCCGGT-TGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGGTCCGGTCTGAGCTTAGACATGGAATGAACTCCGTATGCCTAAG-
* * * * * * * * * *
10380543 TAACCCATGAAATGGGCATGCCGACGCTCAACCAGCCGGAAAGGCAGAATGCATAAGTCGGGGAT
65 TAACCCACGAAACGAGCGTGCAGACGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCGGGGAT
* *
10380608 CGACCCAGTCCCCC-CTGCGTGCT-GTCGA
130 CGACCCGGTCCCCCTCTGCGTGCTACT-GA
* * *
10380636 TCCTACTGCCACAACCCTCGGTCCAGTCTGATCTTAGAC-TAGGAATGAACTCCGTATGC
1 TCCTGCTGCCACAACCCTCGGTCCGGTCTGAGCTTAGACAT-GGAATGAACTCCGTATGC
10380695 TTAGACTAGG
Statistics
Matches: 301, Mismatches: 65, Indels: 20
0.78 0.17 0.05
Matches are distributed among these distances:
156 1 0.00
157 36 0.12
158 137 0.46
159 87 0.29
160 40 0.13
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
TCCTGCTGCCACAACCCTCGGTCCGGTCTGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGT
AACCCACGAAACGAGCGTGCAGACGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATC
GACCCGGTCCCCCTCTGCGTGCTACTGA
Found at i:10380704 original size:26 final size:26
Alignment explanation
Indices: 10380668--10380717 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
10380658 CCAGTCTGAT
10380668 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
10380694 CTTAGACTAGGGATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
10380718 AGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:10381916 original size:159 final size:156
Alignment explanation
Indices: 10381424--10381916 Score: 406
Period size: 159 Copynumber: 3.1 Consensus size: 156
10381414 GCTTCGACAT
* * * * *
10381424 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAACGTGCGGGCGCTCAG-TCGGTATG-
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGGACGTGCGGGCGCTCAGCT-GGCA-GA
* ** * * ** * * *
10381487 AGAGGTAGAATGTGCAAGCCGGGGATCGACCAAGT-CCCCCTGCATGCTGTCGATCTTGCTGCTG
64 AGAGGCAGAATGCACAAGCTGGGGATCGGCCCGGTCCCCCCTGCATGCTATCGATCCTGCTGC-A
*
10381551 CAACCTTCGGTTCGGTCTGATCTTAGACTG
128 CAACCCTCGGTTC-GTCTGATCTTAGACTG
* ** * * * * * *
10381581 GGAATGAACTCCATATGCATAAGTTAACCCATGAAAC-GAGCGTGTGGGCGTTGAACCGGTC-GA
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGGA-CGTGCGGGCGCTCAGCTGG-CAGA
* * * * * * * ** *
10381644 AGAGGCATAATGCACAAGTTGAGGATTGG-CCGGATCCCCGTCTTCTTGCTATCGATCCCACTAC
64 AGAGGCAGAATGCACAAGCTGGGGATCGGCCCGG-TCCCC-CCTGCATGCTATCGATCCTGCT-G
* * **
10381708 CACAACCCTCGGTTAGGCTGGGGCTTAGACAT-
126 CACAACCCTCGGTTCGTCT-GATCTTAGAC-TG
*
10381740 GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGGACGTGCGGGCGCTCAGCTGGCAGGAA
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGGACGTGCGGGCGCTCAGCTGGCA-GAA
* * *
10381805 GAGACAGAATGCACAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCCTGCTGTCAC
65 GAGGCAGAATGCACAAGCTGGGGATCGGCCCGGTCCCCCCTGCATGCTATCGATCCTGCTG-CAC
*
10381870 AACCCTCGGTCCGATCTGATCTTAGACTG
129 AACCCTCGGTTCG-TCTGATCTTAGACTG
*
10381899 GGAATGAACTCTGTATGC
1 GGAATGAACTCCGTATGC
10381917 TTAGACTGGG
Statistics
Matches: 252, Mismatches: 67, Indels: 32
0.72 0.19 0.09
Matches are distributed among these distances:
156 4 0.02
157 64 0.25
158 8 0.03
159 135 0.54
160 37 0.15
161 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (156 bp):
GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGGACGTGCGGGCGCTCAGCTGGCAGAAG
AGGCAGAATGCACAAGCTGGGGATCGGCCCGGTCCCCCCTGCATGCTATCGATCCTGCTGCACAA
CCCTCGGTTCGTCTGATCTTAGACTG
Found at i:10381919 original size:26 final size:26
Alignment explanation
Indices: 10381890--10381942 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10381880 CCGATCTGAT
10381890 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
10381916 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
10381942 C
1 C
10381943 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:10382049 original size:184 final size:191
Alignment explanation
Indices: 10381730--10382161 Score: 479
Period size: 196 Copynumber: 2.3 Consensus size: 191
10381720 TTAGGCTGGG
* * * * * *
10381730 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACG-GACGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAG-CGTGTGAGAGCTCA
* * * * * *** * * *
10381794 GCTGGCAGGAAGAGACAGAATGCACAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTACCGAT
65 ACCGACTGG-AGAGGCAGAATATGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTACCAAT
* * *
10381859 -C-CTGCT-G-T-C-A-CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTAT
129 CCGCTGCTGGCTGCTACCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
10381915 GCTTAGAC-TGGGGATGAACTCTGTATGCCTAAG-TCAACCCACGAAACGAGCGTGTGAGAGCTC
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCACGAAACGAGCGTGTGAGAGCTC
* *
10381978 AACCGACTGGAGAGGCAGAATATGCAAGCCGGGGATCGGCGCGGTCCCCCCTACGTGCTGCCAAT
64 AACCGACTGGAGAGGCAGAATATGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTACCAAT
* *
10382043 CCTGCTGCTGGTCCTGCTACCGCATCCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCG
129 CC-GCTGCTGG--CTGCTA-C-CAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCG
10382108 TAT
189 TAT
10382111 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGC
10382162 CTGCGGGCGC
Statistics
Matches: 202, Mismatches: 28, Indels: 23
0.80 0.11 0.09
Matches are distributed among these distances:
184 47 0.23
185 57 0.28
186 1 0.00
187 5 0.02
188 1 0.00
191 1 0.00
192 1 0.00
193 1 0.00
196 86 0.43
197 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (191 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGTGAGAGCTCAA
CCGACTGGAGAGGCAGAATATGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTACCAATCC
GCTGCTGGCTGCTACCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:10382115 original size:26 final size:26
Alignment explanation
Indices: 10382086--10382138 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10382076 CCGGTCCGAT
10382086 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
10382112 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10382138 C
1 C
10382139 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10382241 original size:196 final size:196
Alignment explanation
Indices: 10381872--10382230 Score: 472
Period size: 196 Copynumber: 1.8 Consensus size: 196
10381862 GCTGTCACAA
* * * * *
10381872 CCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCT
1 CCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * **
10381937 GTATGCCTAAGTCAACCCACGAAACGAGCGTGTGAGAGCTCAACCGACTGGAGAGGCAGAATATG
66 GTATGCCTAAGTCAACCCACGAAACGAGCCTGCGAGAGCTCAACCGACCGGAGAGGCAGAATACA
* * *
10382002 CAAGCCGGGGATCGGCGCGGTCCCCCCTACGTGCTGCCAATCCTGCTGCTGGTCCTGCTACCGCA
131 CAAGCCAGGGAACGGCGCGATCCCCCCTACGTGCTGCCAATCCTGCTGCTGGTCCTGCTACCGCA
10382067 T
196 T
*
10382068 CCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTC
1 CCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTC
* * * * * *
10382132 CGTATGCCTAAG-CTAACCCACGAAACGAGCCTGCGGGCGCTCAGCTGGCCGGAGAGGCAGAATG
65 CGTATGCCTAAGTC-AACCCACGAAACGAGCCTGCGAGAGCTCAACCGACCGGAGAGGCAGAATA
* *
10382196 CACAAGCTAGGGAACGGC-CTGATCCCCCCTGCGTG
129 CACAAGCCAGGGAACGGCGC-GATCCCCCCTACGTG
10382231 TTTTCAATCC
Statistics
Matches: 138, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
195 2 0.01
196 135 0.98
197 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (196 bp):
CCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
GTATGCCTAAGTCAACCCACGAAACGAGCCTGCGAGAGCTCAACCGACCGGAGAGGCAGAATACA
CAAGCCAGGGAACGGCGCGATCCCCCCTACGTGCTGCCAATCCTGCTGCTGGTCCTGCTACCGCA
T
Found at i:10382623 original size:26 final size:26
Alignment explanation
Indices: 10382587--10382639 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10382577 CCGGTCCAAT
*
10382587 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
10382613 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10382639 C
1 C
10382640 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10383568 original size:158 final size:158
Alignment explanation
Indices: 10383339--10383780 Score: 441
Period size: 159 Copynumber: 2.8 Consensus size: 158
10383329 GTATGCTTGG
* * *
10383339 ACATGGG-ATGAACTCCGTATGGCTAAGCTAACCCATGAAACGAGCGTGCAGGCGCTCAGCTGAC
1 ACATGGGAATGAACTCCGTAT-GCTAAGC-AACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGC
*
10383403 CGAAGAGGTAGAATGCGCAAGCCGAAGATCGACCCGGTCCCCCCTGCGTGTTGTCGATCCTA-CT
64 CGAAGAGGTAGAATGCGCAAGCCGAAGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTAGCT
** * * *
10383467 GTCACAATCTTCAGCCC-GATCCGATCTTAC
129 ACCACAACCTTCAGCCCGGCT-CGAGCTTAC
* *
10383497 AC-TGGGAATGAACTCCGTATGCATATGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCTGGC
1 ACATGGGAATGAACTCCGTATGC-TAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGC
* * * **
10383561 CGAAGAGGCATAATGCGCAAGCC-AAGGATCGACCCGGTCCCCCTCTGCATGCTACCGATCC-AG
64 CGAAGAGGTAGAATGCGCAAGCCGAA-GATCGACCCGGTCCCCC-CTGCGTGCTGTCGATCCTAG
* * * * *
10383624 CTACCACAACCTTCGGTCCGGCTGGGGCTTAG
127 CTACCACAACCTTCAGCCCGGCTCGAGCTTAC
** * * *
10383656 ACAT-TCAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG-TCGG
1 ACATGGGAATGAACTCCGTATG-CTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCAGCT-GG
* * * * * * *
10383719 TCGGAGAGGTAGAATGCGCAAGACGGAGATCGGCTCGGTCCCCCCTGCGTGCTGTTGATCCT
63 CCGAAGAGGTAGAATGCGCAAGCCGAAGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCT
10383781 GTTGTCGTAA
Statistics
Matches: 231, Mismatches: 41, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
157 8 0.03
158 102 0.44
159 116 0.50
160 5 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
ACATGGGAATGAACTCCGTATGCTAAGCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCG
AAGAGGTAGAATGCGCAAGCCGAAGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTAGCTAC
CACAACCTTCAGCCCGGCTCGAGCTTAC
Found at i:10383845 original size:26 final size:26
Alignment explanation
Indices: 10383809--10383861 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10383799 CTGCTTCGAT
10383809 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
10383835 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
10383861 C
1 C
10383862 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:10384206 original size:26 final size:26
Alignment explanation
Indices: 10384177--10384229 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10384167 CTGGTCCGAT
10384177 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10384203 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10384229 C
1 C
10384230 CTAAGTAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10384271 original size:184 final size:185
Alignment explanation
Indices: 10384018--10384697 Score: 543
Period size: 184 Copynumber: 3.6 Consensus size: 185
10384008 TCTGGCTGGG
* * * * *
10384018 GCTTAGACATGGAATGAACTCCCTATGCCTCAGCCAACCCACGAAACGGGCGTGTGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
10384083 TCA-GCCGGAGAGGCAGAATGCACAAGCTAGGGATCGACCCGAT-CCTCCTTGCATGCTGCCGAT
66 TCAGGCCGGAGAGGCAGAATGCACAAGCTGGGGATCGACCCGGTCCCTCCTT-CGTGCTGCCGAT
* *
10384146 CATGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
130 CCTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTAT
* ** *
10384202 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCGTGCGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
10384266 GTCAGCTGGAGAGGCCGACAGAAGAGGCAGAATGTACAAGCTGGGGATTGGCCTGGTCCCTCCCT
65 GT---C-----AGGCCG---G-AGAGGCAGAATGCACAAGCTGGGGATCGACCCGGTCCCT-CCT
* * * *
10384331 TCGTGCTGTCGATCCTGCTGCTGGTCCTGCAGCTGCAACCCTCGGTCCGATCTGATCTTAGATTG
117 TCGTGCTGCCGAT-C--CTGCT-G--C--CA----CAACCCTCGGTCTGGTCCGATCTTAGATTG
10384396 GGAATGAACTCCGTAT
170 GGAATGAACTCCGTAT
* * *
10384412 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGCCGCTCA-
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * * *
10384476 ACAGGTCGAAG-GTGTAAAATGCACAAGTTGGGGA-CCAGCTCGGTCCCTCCTACGTGCTACCGA
66 TCAGGCCGGAGAG-GCAGAATGCACAAGCTGGGGATCGA-CCCGGTCCCTCCTTCGTGCTGCCGA
* * * * *
10384539 TCCTACTGCCGCAACCCTTGGT-TCG-CCTTGATCTTAGATTGAGAATGAACTCCGTAT
129 TCCTGCTGCCACAACCCTCGGTCTGGTCC--GATCTTAGATTGGGAATGAACTCCGTAT
* * * * *
10384596 GCTTAGAC-TAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGAGCACTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* ** * * *
10384660 GTC-GACCAAAGAGGCAGGATGCGCAAGCCGGGGATCGA
65 GTCAGGCCGGAGAGGCAGAATGCACAAGCTGGGGATCGA
10384698 ACGGGTGGTA
Statistics
Matches: 388, Mismatches: 71, Indels: 73
0.73 0.13 0.14
Matches are distributed among these distances:
182 1 0.00
183 2 0.01
184 166 0.43
185 4 0.01
187 1 0.00
188 1 0.00
190 1 0.00
192 2 0.01
193 8 0.02
195 1 0.00
196 15 0.04
197 56 0.14
198 13 0.03
199 5 0.01
201 9 0.02
202 1 0.00
204 1 0.00
206 3 0.01
210 97 0.25
211 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCAGGCCGGAGAGGCAGAATGCACAAGCTGGGGATCGACCCGGTCCCTCCTTCGTGCTGCCGATC
CTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTAT
Found at i:10385371 original size:26 final size:26
Alignment explanation
Indices: 10385319--10385371 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10385309 GGCTCAAAAT
* *
10385319 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
10385345 CTTAGACAT-GGAATGAACTCCGCATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
10385371 C
1 C
10385372 CTAAGCCATC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:10385677 original size:320 final size:319
Alignment explanation
Indices: 10385096--10385721 Score: 941
Period size: 320 Copynumber: 2.0 Consensus size: 319
10385086 GAGGTTTGAT
* * * *
10385096 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCGATCATACATCATGTGCGCACACCC
1 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGCGCACACACCC
* ** *
10385161 CCCGGCCCCCCAATCGTCGGAACCCCTAATACTGCCGGTTAGGCTCTCCGGTGATGCTCCGATCC
66 CCCGCCCCCCCAATCGTCGGAACCCCTAATACTGCCGGTTAGGCTCTCCGACGATACTCCGATCC
* * * *** * * * *
10385226 TGCTTCGACGATGCTCTGGCGATGGTGCCTCGGGCAAGAAAAATACGGCACCAGCACATGCCCGA
131 TACTCCGACGATACTCCCACGACGGTGCCCCGGGCAAGAAAAAAACGACACCAGCACATGCCCGA
*
10385291 GCCCAGCATGTGCACCGTGGCTCAAAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGG
196 GCCCAGCATGTGCACCGTGGCTCAAAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGG
10385356 AATGAACTCCGCATGCCTAAGCCATCCCACAAAACGAGCATGCGGGCCAATATAGGGGA
261 AATGAACTCCGCATGCCTAAGCCATCCCACAAAACGAGCATGCGGGCCAATATAGGGGA
*
10385415 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCACACATCC
1 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGCGCACACA-CC
* *
10385480 CCCCGCCCCCCCAATCGTCGGAACCCCTAATA-TCGTCGGTTAGGCTCTCCGACGATACTCCGGT
65 CCCCGCCCCCCCAATCGTCGGAACCCCTAATACT-GCCGGTTAGGCTCTCCGACGATACTCCGAT
* *
10385544 CCTACTCCGACGATACTCCCACGACGGTGCCCCGGGTGAA-AAAAAAATGACACCAGCACATGCC
129 CCTACTCCGACGATACTCCCACGACGGTGCCCCGGG-CAAGAAAAAAACGACACCAGCACATGCC
* *
10385608 CGAGCCCAGCATGTGCACCGTGGCTCAAAATCTTAGGCTTGGAATGAACTCCGTATGCTTAGACA
193 CGAGCCCAGCATGTGCACCGTGGCTCAAAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACA
* ** *
10385673 TGGAATGAACTCCGTATGCCTAAGCCATCCCATGAAACGAGCGTGCGGG
258 TGGAATGAACTCCGCATGCCTAAGCCATCCCACAAAACGAGCATGCGGG
10385722 TGCTTAGCCA
Statistics
Matches: 274, Mismatches: 30, Indels: 5
0.89 0.10 0.02
Matches are distributed among these distances:
319 58 0.21
320 214 0.78
321 2 0.01
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.18
Consensus pattern (319 bp):
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGCGCACACACCC
CCCGCCCCCCCAATCGTCGGAACCCCTAATACTGCCGGTTAGGCTCTCCGACGATACTCCGATCC
TACTCCGACGATACTCCCACGACGGTGCCCCGGGCAAGAAAAAAACGACACCAGCACATGCCCGA
GCCCAGCATGTGCACCGTGGCTCAAAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGG
AATGAACTCCGCATGCCTAAGCCATCCCACAAAACGAGCATGCGGGCCAATATAGGGGA
Found at i:10386167 original size:158 final size:157
Alignment explanation
Indices: 10385665--10386484 Score: 623
Period size: 158 Copynumber: 5.2 Consensus size: 157
10385655 ACTCCGTATG
* * * *
10385665 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCATCCCATGAAACGAGCGTGCGGGTGCTTAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
10385729 CCAGTCGGAGAGGTAGAATGCATAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
65 CCGGCCGAAGAGGTAGAATGCGTAAGCCGGGGATCG-GCCGGTCCCCCCTGCGTGCTGTCGATCC
* * * * *
10385794 TGCTCCCGCAACCCTC-AGTCTGGTCTGAT
129 TACTACCACAACCCTCGA-TCCGGTCCGAT
* * * * *
10385823 CTTAGATTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
10385888 CGACTGAAGGGGCATAATGCGCAACCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTG-CCAGTC
66 CGGCCGAAGAGGTAGAATGCGTAAGCCGGGGATCGGCC-GGTCCCCC-CTGCGTGCTGTCGA-TC
* * * * **
10385952 CCACTACCACAACCCTCGGTCC-GACTGGGG
128 CTACTACCACAACCCTCGATCCGGTC-CGAT
*
10385982 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
10386046 TCGGCCGTAGAGGTAGAATGCGTAAGCTGAGGATCGGTACGGTCGCCCCTGCGTGTTGTCGATCC
65 CCGGCCGAAGAGGTAGAATGCGTAAGCCGGGGATCGG-CCGGTCCCCCCTGCGTGCTGTCGATCC
* *
10386111 TACTACCATAACCCTCGATCCGGTCCAAT
129 TACTACCACAACCCTCGATCCGGTCCGAT
* * * * * ** *
10386140 CCTAGACTGGGAATGAACTCCGTATGCCTAAGTCAATCCATGAAACGAGCGTGCGAGAACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * *
10386205 CAGG-TGGAGAGGCATAATGCGCAAGTCGGGGATCGACTCGATCCCCTTCTGCGTGCTGTCGGTT
66 C-GGCCGAAGAGGTAGAATGCGTAAGCCGGGGATCGGC-CGGTCCCC-CCTGCGTGCTGTC-GAT
** * * * * * **
10386269 TTTGCTGCCACAACCATCGGTCCGG-CTGGGG
127 CCTACTACCACAACCCTCGATCCGGTC-CGAT
* * * * * *
10386300 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCAGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * *
10386364 CCGGTAGGAA-AGGCAGAATGCGTAAGCCGGTGATCGGTCCGATCCCCCCTGCGTGCTGCCGATC
65 CCGG-CCGAAGAGGTAGAATGCGTAAGCCGGGGATCGG-CCGGTCCCCCCTGCGTGCTGTCGATC
* * * * *
10386428 CTACTGCCGCAACCCTCGGTCCGATTCGAT
128 CTACTACCACAACCCTCGATCCGGTCCGAT
*
10386458 CTTAGACTGGGAATGAACTACGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
10386485 TTAGACTGGG
Statistics
Matches: 510, Mismatches: 130, Indels: 44
0.75 0.19 0.06
Matches are distributed among these distances:
157 5 0.01
158 249 0.49
159 147 0.29
160 105 0.21
161 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGAAGAGGTAGAATGCGTAAGCCGGGGATCGGCCGGTCCCCCCTGCGTGCTGTCGATCCTA
CTACCACAACCCTCGATCCGGTCCGAT
Found at i:10386239 original size:317 final size:317
Alignment explanation
Indices: 10385664--10386484 Score: 995
Period size: 317 Copynumber: 2.6 Consensus size: 317
10385654 AACTCCGTAT
* * *
10385664 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCATCCCATGAAACGAGCGTGCGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * ** *
10385729 CCAGTCGGAGAGGTAGAATGCATAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
66 CCGGTCGGAGAGGTAGAATGCGTAAGCC-GGGATCGGTCCGGTCCCCCCTGCGTGCTGTCGATCC
* * * * *
10385794 TGCTCCCGCAACCCTC-AGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCATAAGTCA
130 TACTACCGCAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
** *
10385858 ACCCACGAAACGAGCGTGCAGGCGCTGAGCCGACTGAAGGGGCATAATGCGCAACCCGGGGATCG
194 ACCCACGAAACGAGCGTGCAGGAACTGAGCCGACTGAAGAGGCATAATGCGCAACCCGGGGATCG
* * *
10385923 GC-CTGGTCCCCCTCTGCGTGCTGCCAG-TCCCACTACCACAACCCTCGGTCCGACTGGG
259 ACTC-GATCCCCCTCTGCGTGCTGCCAGTTCCCACTACCACAACCATCGGTCCGACTGGG
* *
10385981 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * * * *
10386046 TCGGCCGTAGAGGTAGAATGCGTAAGCTGAGGATCGGTACGGTCGCCCCTGCGTGTTGTCGATCC
66 CCGGTCGGAGAGGTAGAATGCGTAAGCCG-GGATCGGTCCGGTCCCCCCTGCGTGCTGTCGATCC
** * * *
10386111 TACTACCATAACCCTCGATCCGGTCCAATCCTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
130 TACTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
* * * * **
10386176 TCCATGAAACGAGCGTGC-GAGAACTGAGCC-AGGTGGAGAGGCATAATGCGCAAGTCGGGGATC
195 CCCACGAAACGAGCGTGCAG-GAACTGAGCCGA-CTGAAGAGGCATAATGCGCAACCCGGGGATC
* * * **** * *
10386239 GACTCGATCCCCTTCTGCGTGCTGTCGGTTTTTGCTGCCACAACCATCGGTCCGGCTGGG
258 GACTCGATCCCCCTCTGCGTGCTGCCAGTTCCCACTACCACAACCATCGGTCCGACTGGG
* * *
10386299 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * *
10386364 CCGGTAGGAAAGGCAGAATGCGTAAGCCGGTGATCGGTCCGATCCCCCCTGCGTGCTGCCGATCC
66 CCGGTCGGAGAGGTAGAATGCGTAAGCCGG-GATCGGTCCGGTCCCCCCTGCGTGCTGTCGATCC
* * * * *
10386429 TACTGCCGCAACCCTCGGTCCGATTCGATCTTAGACTGGGAATGAACTACGTATGC
130 TACTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
10386485 TTAGACTGGG
Statistics
Matches: 423, Mismatches: 74, Indels: 13
0.83 0.15 0.03
Matches are distributed among these distances:
316 3 0.01
317 236 0.56
318 184 0.43
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
CCGGTCGGAGAGGTAGAATGCGTAAGCCGGGATCGGTCCGGTCCCCCCTGCGTGCTGTCGATCCT
ACTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAAC
CCACGAAACGAGCGTGCAGGAACTGAGCCGACTGAAGAGGCATAATGCGCAACCCGGGGATCGAC
TCGATCCCCCTCTGCGTGCTGCCAGTTCCCACTACCACAACCATCGGTCCGACTGGG
Found at i:10386509 original size:26 final size:26
Alignment explanation
Indices: 10386458--10386510 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10386448 CCGATTCGAT
*
10386458 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACATATG
* *
10386484 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTACATATG
10386510 C
1 C
10386511 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:10387041 original size:26 final size:26
Alignment explanation
Indices: 10387000--10387052 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10386990 CTGGTTTGAT
10387000 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10387026 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
10387052 C
1 C
10387053 CTAAGTCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10387418 original size:26 final size:26
Alignment explanation
Indices: 10387380--10387432 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10387370 CCGGTCTGAT
* *
10387380 CTTAGACAAGGAATTAACTTCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
**
10387406 CTTAGACGTGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
10387432 C
1 C
10387433 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:10387592 original size:26 final size:26
Alignment explanation
Indices: 10387563--10387615 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10387553 CCGGTTCGAT
10387563 CTTAGACT-AGGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
10387589 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
10387615 C
1 C
10387616 CTAAGTCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:10387980 original size:26 final size:26
Alignment explanation
Indices: 10387942--10387994 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10387932 CCAGTTTGAT
*
10387942 CTTAGACTGGGAATGCACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10387968 CTTAGAC-GTGGAATGAACTTCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
10387994 C
1 C
10387995 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10389200 original size:26 final size:26
Alignment explanation
Indices: 10389162--10389214 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10389152 GGCTCAAAGT
10389162 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10389188 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
10389214 C
1 C
10389215 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10389930 original size:26 final size:25
Alignment explanation
Indices: 10389901--10389952 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
10389891 CCAGTCCGAT
10389901 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCC-TATG
*
10389927 CTTAGACATGGAATGAATTCCTATG
1 CTTAGACATGGAATGAACTCCTATG
10389952 C
1 C
10389953 CTAAGCAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 5 0.21
26 18 0.75
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (25 bp):
CTTAGACATGGAATGAACTCCTATG
Found at i:10390626 original size:26 final size:26
Alignment explanation
Indices: 10390597--10390649 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10390587 CCGGTCCAAT
*
10390597 CTTAGAC-TGGGAGTGAACTCCGTATG
1 CTTAGACGT-GGAATGAACTCCGTATG
10390623 CTTAGACGTGGAATGAACTCCGTATG
1 CTTAGACGTGGAATGAACTCCGTATG
10390649 C
1 C
10390650 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACGTGGAATGAACTCCGTATG
Found at i:10390809 original size:26 final size:26
Alignment explanation
Indices: 10390780--10390832 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10390770 CTGGTCTGAT
10390780 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
10390806 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
10390832 C
1 C
10390833 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:10391539 original size:26 final size:26
Alignment explanation
Indices: 10391501--10391553 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10391491 GGCTCAAAGT
10391501 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10391527 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
10391553 C
1 C
10391554 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10391831 original size:159 final size:159
Alignment explanation
Indices: 10391526--10391957 Score: 345
Period size: 159 Copynumber: 2.7 Consensus size: 159
10391516 AACTCCATAT
* * ** * * * *
10391526 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTATGAAACGAACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAA
* * * *** * * * **
10391591 CCGGTCA-GAGAGGCAGAATGCACAACCTGGGGATCGGTCTGGTCCCCC-CT-TGCATGCTGTCG
66 CCGAT-AGGAGAGACAGAATGCACAAGCAAAGGATCGGCCCGATCCCCCTCTGTG--TGCTACCG
* *** * * *
10391653 ATCCTGCTACCGCAACCCTCCAACCGGTCT-GA
128 GTCCCATTGCCACATCCCTCCAACCGG-CTGGA
* * * * * * *
10391685 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGATCGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCA
* * **
10391749 ACCGATAGGAGAGGCATAATGCACAAGTC-GGGGATCGGCCCGATCCCCCTCTGTGTGCTACCGG
65 ACCGATAGGAGAGACAGAATGCACAAG-CAAAGGATCGGCCCGATCCCCCTCTGTGTGCTACCGG
*** * *
10391813 TCCCATTGCCACATCCCTCGGTCTGGCTGGG
129 TCCCATTGCCACATCCCTCCAACCGGCTGGA
* *
10391844 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAA
* * *
10391909 CCGGTCGGAGAGACAGAATGCCCAAGCAAAGGATCGGCCCGATCCCCCT
66 CCGATAGGAGAGACAGAATGCACAAGCAAAGGATCGGCCCGATCCCCCT
10391958 GCGTGCTGTC
Statistics
Matches: 219, Mismatches: 46, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
158 5 0.02
159 208 0.95
160 4 0.02
161 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAA
CCGATAGGAGAGACAGAATGCACAAGCAAAGGATCGGCCCGATCCCCCTCTGTGTGCTACCGGTC
CCATTGCCACATCCCTCCAACCGGCTGGA
Found at i:10392467 original size:25 final size:26
Alignment explanation
Indices: 10392439--10392490 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10392429 CCGATCTGAT
10392439 CTTAGAC-AGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* **
10392464 CTTAGACTGGGGGTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
10392490 C
1 C
10392491 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:10392867 original size:26 final size:26
Alignment explanation
Indices: 10392816--10392868 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10392806 ATGATTTGAT
*
10392816 CTTAGACTGGGAATGAACTGCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10392842 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
10392868 C
1 C
10392869 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10393396 original size:26 final size:26
Alignment explanation
Indices: 10393367--10393416 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
10393357 CCGGTCCGAT
10393367 CTTAGAC-TGGGAATGAACTCCGTACG
1 CTTAGACAT-GGAATGAACTCCGTACG
10393393 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
10393417 TGCCTAATCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTACG
Found at i:10393564 original size:551 final size:554
Alignment explanation
Indices: 10392352--10393565 Score: 1464
Period size: 551 Copynumber: 2.2 Consensus size: 554
10392342 GAGGTGATCA
* * *
10392352 GAGAGGCAGAATGCGCAAGCCGGGTATCGGCTCGAT-CCCCCTAGCGTGCTGTCGATTCTACTGC
1 GAGAGGCAGAATGCGCAAGCCGGG-ATCGGCTCGATCCCCCCTA-CGTGCTGTCGATCCTGCTAC
* * *
10392416 CGTAACCTTCAGTCCGATCTGATCTTAGAC-AGGAATGAACTCCGTATGCTTAGACTGGGGGTGA
64 CGTAACCTTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGA
10392480 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGGTCAATCGGTCAAAGAGGCCAA
129 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC-GGTGGTCAATCGGTC--AGA-G-C-A
* ** ***
10392545 CGGAGAGGCATAATGCGAAAGCCGGGGATCAGCCCCATCCCCCTCTGCGTGCTACCGATCCTGTT
188 CGGAAAGGCATAATGCGAAAGCCAAGGATCAGCCCCATCCCCCTCTGCGTGCTACCGATCCCACT
* *
10392610 ACCGATCCTACTGCCATAACCCTCGGTACGACTGGGGCTTAGACATAGAATGAACTCCGTATGCC
253 ACCGATCCTACTGCCACAACCCTCGGTACGACTGGGGCATAGACATAGAATGAACTCCGTATGCC
* * *** * * *
10392675 TAAGCCAAACTATGAAACGAGCGTGCGGGCGCTCAGTTAGTCGGAGAGGCAGAATGTGCAAGCCG
318 TAAGCCAAACCACGAAACGAGCGTGCGGGCGCTCAACCAGCCGAAGAGGCAGAATGCGCAAGCCG
* *
10392740 AGGATCGACCCGGCCCCCCTACGTGCTGTCGATCCTGCTACTGGTCCTGCTGTCGCCATCCTCGG
383 AGGATCGACCCGGCCCCCCTACATGCTGTCGATCCTGCTACTGGTCCTGCTGTCGCCACCCTCGG
* ** * *
10392805 TATGATTTGATCTTAGACTGGGAATGAACTGCATATGCTTAGACATGGAATGAACTCCGTATGCC
448 TACGATCCGATCTTAGACTGGGAATGAACTCCATACGCTTAGACATGGAATGAACTCCGTATGCC
* * *
10392870 TAAGCTAACCCACGAAATGAGCATGCGGGCACTCAGCCTGCG
513 TAAGCCAACCCACGAAATGAGCATGCAGGCACTCAACCTGCG
* * * * * * * * *
10392912 AAGAGACAGAATGCGTAAGTCGGGGACCGG-TCCGGTCCCCCCCGACGTGCTATCGATCCAGC-A
1 GAGAGGCAGAATGCGCAAG-CCGGGATCGGCT-CGAT-CCCCCCTACGTGCTGTCGATCCTGCTA
* * * *
10392975 GCCGCAAACC-TCTGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTAGGGA
63 -CCG-TAACCTTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGA
* * *
10393039 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTC-G-GG-CACTCGGTC-GA-C-TGG
126 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGTGGTCAATCGGTCAGAGCACGG
* ** ** **
10393098 AAAGGCATAATGCGCAAGCCAAGGATCAGCCTGATCCCCCTCTGCGTGCTGTCGATCCCACTGTC
191 AAAGGCATAATGCGAAAGCCAAGGATCAGCCCCATCCCCCTCTGCGTGCTACCGATCCCACTACC
* * * *
10393163 GATCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCATAGACATGGAATGAACTCCGTATGCCTAA
256 GATCCTACTGCCACAACCCTCGGTACGACTGGGGCATAGACATAGAATGAACTCCGTATGCCTAA
* * * * *
10393228 GCCAACCCGCGAAACGAGCGTGCGGGTGCTCAACCGGCCGAAGAGGTAGAATGCGCAAGCCGAGG
321 GCCAAACCACGAAACGAGCGTGCGGGCGCTCAACCAGCCGAAGAGGCAGAATGCGCAAGCCGAGG
* * * * *
10393293 ATC-ACCTCGGTCCCCCTTGCATGCTGTCGATCCTGCTGCTTGTCCTGCTGTCGCCACCCTTGGT
386 ATCGACC-CGG-CCCCCCTACATGCTGTCGATCCTGCTACTGGTCCTGCTGTCGCCACCCTCGGT
* * *
10393357 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACATGGAATGAACTCCGTATGCCT
449 ACGATCCGATCTTAGACTGGGAATGAACTCCATACGCTTAGACATGGAATGAACTCCGTATGCCT
* * *
10393422 AATCCAACCCACGAAATGAGCGTGCAGGCGCTCAACC-GACCG
514 AAGCCAACCCACGAAATGAGCATGCAGGCACTCAACCTG--CG
* *
10393464 GAGAGGCAGAATGCGCAGGCCAGGGATCGGCTCGATCCCCCCTACGTGCTGTCGATCCTGCTATC
1 GAGAGGCAGAATGCGCAAGCC-GGGATCGGCTCGATCCCCCCTACGTGCTGTCGATCCTGCTACC
* *
10393529 GTAACCTTCAATCCGATCTGTTCTTAGACTGGGAATG
65 GTAACCTTCAGTCCGATCTGATCTTAGACTGGGAATG
10393566 CATAAGCCGG
Statistics
Matches: 547, Mismatches: 92, Indels: 39
0.81 0.14 0.06
Matches are distributed among these distances:
549 3 0.01
550 176 0.32
551 184 0.34
552 29 0.05
553 1 0.00
555 2 0.00
558 8 0.01
559 3 0.01
560 24 0.04
561 39 0.07
562 78 0.14
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (554 bp):
GAGAGGCAGAATGCGCAAGCCGGGATCGGCTCGATCCCCCCTACGTGCTGTCGATCCTGCTACCG
TAACCTTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAAC
TCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGTGGTCAATCGGTCAGAGCACGGAAAGG
CATAATGCGAAAGCCAAGGATCAGCCCCATCCCCCTCTGCGTGCTACCGATCCCACTACCGATCC
TACTGCCACAACCCTCGGTACGACTGGGGCATAGACATAGAATGAACTCCGTATGCCTAAGCCAA
ACCACGAAACGAGCGTGCGGGCGCTCAACCAGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGA
CCCGGCCCCCCTACATGCTGTCGATCCTGCTACTGGTCCTGCTGTCGCCACCCTCGGTACGATCC
GATCTTAGACTGGGAATGAACTCCATACGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
CCCACGAAATGAGCATGCAGGCACTCAACCTGCG
Found at i:10393846 original size:285 final size:285
Alignment explanation
Indices: 10393301--10393850 Score: 719
Period size: 285 Copynumber: 1.9 Consensus size: 285
10393291 GGATCACCTC
* *
10393301 GGTCCCCCTTGCATGCTGTCGATCCTGCTGCTTGTCCTGCTGTCGCCACCCTTGGTCCGGTCCGA
1 GGTCCCCCTTGCATGCTGTCGATCCTGCTGCTTGTCCTGCTGTCGCAACCCTCGGTCCGGTCCGA
* *
10393366 TCTTAGACTGGGAATGAACTCCGTACGCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACC
66 TCTTAGACTGGGAATGAACTCCGTACGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
** * * * * * * *
10393431 CACGAAATGAGCGTGCAGGCGCTCAACCGACCGGAGAGGCAGAATGCGCAGGCCAGGGATCGGCT
131 CACGAAACAAGCGTGCAGGAGCTCAACCGACCGAAGAGGCAAAATGCGCAAGCCAGGGACCGACC
* * * * * *
10393496 CGATCCCCCCTACGTGCTGTCGATCCTGCTATCGTAACCTTCAATCCGATCTGTTCTTAGACTGG
196 CGATCCCCCCTACGTGCTGTCAATCCTGCTACCGCAACCCTCAACCCGATCTGATCTTAGACTGG
10393561 GAATGCATAAGCCGGGGATGGGTCG
261 GAATGCATAAGCCGGGGATGGGTCG
* * * * *
10393586 GGTCCCTCTTGCGTGCTGTCGATCCTGTTG-TTGGTCCTGCTGTCGGAACCCTCGGTCCGGTCTG
1 GGTCCCCCTTGCATGCTGTCGATCCTGCTGCTT-GTCCTGCTGTCGCAACCCTCGGTCCGGTCCG
* * *
10393650 ATCTTAGATTTGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
65 ATCTTAGACTGGGAATGAACTCCGTACGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
* * * *
10393715 CCACGAAACAAGCGTGCGGGAGCTCAGCC-AGCCGAAGAGGCAAAATGCGCAAGTCGGGGACCGA
130 CCACGAAACAAGCGTGCAGGAGCTCAACCGA-CCGAAGAGGCAAAATGCGCAAGCCAGGGACCGA
* * ** * *
10393779 CCCGATCCCCCCTGCGTGCTGTCAATCCTGCTGCCGCAACCCTCGGCCCGGT-TCGATCTTGGAC
194 CCCGATCCCCCCTACGTGCTGTCAATCCTGCTACCGCAACCCTCAACCCGATCT-GATCTTAGAC
10393843 TGGGAATG
258 TGGGAATG
10393851 AACTCTGTAT
Statistics
Matches: 225, Mismatches: 37, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
284 4 0.02
285 221 0.98
ACGTcount: A:0.20, C:0.30, G:0.27, T:0.23
Consensus pattern (285 bp):
GGTCCCCCTTGCATGCTGTCGATCCTGCTGCTTGTCCTGCTGTCGCAACCCTCGGTCCGGTCCGA
TCTTAGACTGGGAATGAACTCCGTACGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
CACGAAACAAGCGTGCAGGAGCTCAACCGACCGAAGAGGCAAAATGCGCAAGCCAGGGACCGACC
CGATCCCCCCTACGTGCTGTCAATCCTGCTACCGCAACCCTCAACCCGATCTGATCTTAGACTGG
GAATGCATAAGCCGGGGATGGGTCG
Found at i:10394040 original size:159 final size:158
Alignment explanation
Indices: 10393677--10394139 Score: 525
Period size: 159 Copynumber: 2.9 Consensus size: 158
10393667 AACTCCGTAT
*
10393677 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGAGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
* * * * * *
10393742 CCAGCCGAAGAGGCAAAATGCGCAAGTCGGGGACCGACCCGATCCCCCCTGCGTGCTGTCAATCC
66 CCAGTCGGAGAGGCAAAATACGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCC
* * * *
10393807 TGCTGCCGCAACCCTCGGCCCGGTTCGA
131 CGCTACCACAACCCTCGGCCCGGCTCGA
* * ** * * *
10393835 TCTTGGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCA
* *
10393899 GCCAGTCGGAGAGGCATAATACGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTG-CTGA
65 GCCAGTCGGAGAGGCAAAATACGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTGTC-AA
* * * *
10393963 TCCCGCTACCACAACGCTCGGTCCGGCTGGG
128 TCCCGCTACCACAACCCTCGGCCCGGCTCGA
* * * * * * **
10393994 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTAGGAAACGGGCATGCCGCCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
* * * * *
10394059 CCAGTCGGAGAGGCAGAATACGCAAGCCGGGGATTGGCCTGGTCCCCCCTGCGTGCTGTCGATCC
66 CCAGTCGGAGAGGCAAAATACGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCC
** *
10394124 TACTGCCACAACCCTC
131 CGCTACCACAACCCTC
10394140 TGTCCAGTCT
Statistics
Matches: 255, Mismatches: 45, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
157 1 0.00
158 124 0.49
159 129 0.51
160 1 0.00
ACGTcount: A:0.22, C:0.33, G:0.28, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
CCAGTCGGAGAGGCAAAATACGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCC
CGCTACCACAACCCTCGGCCCGGCTCGA
Found at i:10394194 original size:26 final size:26
Alignment explanation
Indices: 10394153--10394205 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10394143 CCAGTCTTAT
10394153 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10394179 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
10394205 C
1 C
10394206 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10395415 original size:26 final size:26
Alignment explanation
Indices: 10395379--10395431 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10395369 CCGGTCCGAT
* *
10395379 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10395405 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10395431 C
1 C
10395432 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10395759 original size:159 final size:158
Alignment explanation
Indices: 10395404--10395766 Score: 392
Period size: 158 Copynumber: 2.3 Consensus size: 158
10395394 AACTCTGTAT
* **
10395404 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGTTGGAGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGAGCTCAG
* * * * **
10395469 CTGGCCGGAGAGGTAGAATCCGTAAGCCGGGGAATAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CTGACCGCAGAGGCAGAATCCGTAAGCCGGGGAATAGCCCGATCCCCCCTGCGTGCTACCGATCC
* * * *
10395534 TGCTACCGCAACCCTCAGTCCGTTCTGA
131 CGCTACCACAACCCTCAGTCAGTTCGGA
* * * * *
10395562 TCTTAGACTGGGAATGAACTCCGTCTGCCTAATTCAACCCATGAAACAAGCGTGCGGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGAGCTCAG
* * * **
10395627 -TCGATCGCAGAGGCATAATCCGTAAGCCGGGG-ATCGACCCGATCCCCCTCTTTGTGCTACCGA
66 CT-GACCGCAGAGGCAGAATCCGTAAGCCGGGGAATAG-CCCGATCCCCC-CTGCGTGCTACCGA
* * *
10395690 TCCCGCTGCCACAACCCTCGGTTCAGTT-GGG
128 TCCCGCTACCACAACCCTCAG-TCAGTTCGGA
* * *
10395721 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
10395767 TGGGAGTGCG
Statistics
Matches: 168, Mismatches: 32, Indels: 9
0.80 0.15 0.04
Matches are distributed among these distances:
157 4 0.02
158 92 0.55
159 66 0.39
160 6 0.04
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGAGCTCAG
CTGACCGCAGAGGCAGAATCCGTAAGCCGGGGAATAGCCCGATCCCCCCTGCGTGCTACCGATCC
CGCTACCACAACCCTCAGTCAGTTCGGA
Found at i:10395851 original size:501 final size:502
Alignment explanation
Indices: 10394876--10396002 Score: 1360
Period size: 501 Copynumber: 2.2 Consensus size: 502
10394866 GCAGCTCAAA
* * * *
10394876 ATCTTAAACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
1 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAA
* * * * * ** *
10394940 CCCACAAAATGAA-CATG-CGTGCGCTCAGCCGG-TGAGAAAGGTAGAATGTGCAAGCTGGGG-A
65 CCCACGAAA-CAAGCGTGTCG-GCGCTCAGCCGGCCG-GAGAGGTAGAATCCGCAAGCCGGGGAA
* * * * *
10395001 TCGACCCGGTCCCCCCTGCATGCTGTCGATCCTACTGCTGCAACCTTCAGTTCGGTCTGATCTTA
127 TAGACCCGGTCCCCCCTGCATGCTGTCGATCCTACTACCGCAACCCTCAGTCCGGTCTGATCTTA
* **
10395066 GACTAGGAATGAACTTCGTATGCATAAGTTAACCCATGAAATGAGCGTGCGGGCGCTGAACCGAC
192 GACTAGGAATGAACTCCGTATGCATAAGTTAACCCATGAAACAAGCGTGCGGGCGCTGAACCGAC
* * ** * * * *
10395131 GGAAGAGACATAATGCACAAGTCGAGGATCGGTCGGATCCCCGTCTTCGTGCTATCGGTCCCGCT
257 GGAAGAGACATAATCCACAAGCCGAGGATCGACCCGATCCCCCTCTTCGTGCTACCGATCCCGCT
*
10395196 ACCACAACCCTCGGTTAGGCTGGGGCTTAGACATGGAGTGAACTCCCTATGCCTAAGCCAACCCA
322 ACCACAACCCTCGGTTAGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * *
10395261 TGAAACGGACGTACGGGCGCTCAGCCAACCGGAGAGGCAGAATGCATAAGCTGGGGATCGACCTG
387 CGAAACGGACGTACGAGCGCTCAGCCAACCGGAGAGGCAGAATGCACAAGCTGGGGATCGACCTG
** * *
10395326 GTACACGTTGCGTGCTACCGATCCTGCTGTCGCAACCCTCGGTCCGGTCCG
452 GTACACCCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCG
*
10395377 ATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* * * * *
10395442 CCATGAAACAAGCGTGTTGGAGCTCAGCTGGCCGGAGAGGTAGAATCCGTAAGCCGGGGAATAG-
66 CCACGAAACAAGCGTGTCGGCGCTCAGCCGGCCGGAGAGGTAGAATCCGCAAGCCGGGGAATAGA
* * *
10395506 CCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGTTCTGATCTTAGACT
131 CCCGGTCCCCCCTGCATGCTGTCGATCCTACTACCGCAACCCTCAGTCCGGTCTGATCTTAGACT
* * * **
10395571 GGGAATGAACTCCGTCTGCCTAA-TTCAACCCATGAAACAAGCGTGCGGGCGCTGAGTCGATC-G
196 AGGAATGAACTCCGTATGCATAAGTT-AACCCATGAAACAAGCGTGCGGGCGCTGAACCGA-CGG
* * ** * * *
10395634 CAGAGGCATAATCCGTAAGCCGGGGATCGACCCGATCCCCCTCTTTGTGCTACCGATCCCGCTGC
259 AAGAGACATAATCCACAAGCCGAGGATCGACCCGATCCCCCTCTTCGTGCTACCGATCCCGCTAC
*
10395699 CACAACCCTCGGTTCA-GTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
324 CACAACCCTCGGTT-AGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * * *
10395763 GAAATGGGA-GTGCGAGCGCTCAGCCGACTGGAGAGGCAGAATGCGCAAGAC-GGGGATCGGTCC
388 GAAA-CGGACGTACGAGCGCTCAGCCAACCGGAGAGGCAGAATGCACAAG-CTGGGGATC-GACC
* * ** * * *
10395826 -GGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGTAACCTTCGGTCCGGTCTG
450 TGGTACACCCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCG
* * *
10395878 ATCTTAGACTGGGAATGAATTCTGTATGCTTAGGCCGGGGATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
10395943 CCACGAAACGAGCGTGTGGGCGCTCAGCCGACCAGAGAGGCAGGATCCGCAAGCCGGGGA
66 CCACGAAACAAGCGTGTCGGCGCTCAGCCGGCCGGAGAGGTAGAATCCGCAAGCCGGGGA
10396003 TCGAATGGGT
Statistics
Matches: 530, Mismatches: 85, Indels: 22
0.83 0.13 0.03
Matches are distributed among these distances:
500 5 0.01
501 511 0.96
502 14 0.03
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (502 bp):
ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACAAGCGTGTCGGCGCTCAGCCGGCCGGAGAGGTAGAATCCGCAAGCCGGGGAATAGA
CCCGGTCCCCCCTGCATGCTGTCGATCCTACTACCGCAACCCTCAGTCCGGTCTGATCTTAGACT
AGGAATGAACTCCGTATGCATAAGTTAACCCATGAAACAAGCGTGCGGGCGCTGAACCGACGGAA
GAGACATAATCCACAAGCCGAGGATCGACCCGATCCCCCTCTTCGTGCTACCGATCCCGCTACCA
CAACCCTCGGTTAGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
ACGGACGTACGAGCGCTCAGCCAACCGGAGAGGCAGAATGCACAAGCTGGGGATCGACCTGGTAC
ACCCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCG
Found at i:10396645 original size:26 final size:26
Alignment explanation
Indices: 10396604--10396656 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10396594 GGCTCAAAAT
*
10396604 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10396630 CTTAGACATGGG-ATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10396656 C
1 C
10396657 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10396929 original size:159 final size:156
Alignment explanation
Indices: 10396642--10397132 Score: 461
Period size: 159 Copynumber: 3.1 Consensus size: 156
10396632 TAGACATGGG
* *
10396642 ATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTACGGGCGCTCAGTCGGCCGGAGAGG
1 ATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGG
* * * * * * * * *
10396707 CAGAATGCGCAAGCCAGAGATCGACCCAGTCCCCCCCTGTGTGTTGTTGATCCTGCTGTCACAAC
65 AAGAATGCGCAAGCCAG-GATCGGCTCGGT-CCCCCCTGCGTGCTGCTGATCCTACTGCCACAAC
* *
10396772 CCTCGATCCGGTCCGATCTTAGACTAGGA
128 CCTCGGTCTGGTCCGATCTTAGACTAGGA
* * * * *
10396801 ATGAACTCCGTATGCATATGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG-CTGGCTGAAGAG
1 ATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCAGTC-GGCCGGAGAG
* * * * *
10396865 GAATAATGCGCAAGCCAAGGATCGGTTCGGTCCCCCTCTGCGTGCTGCCGGTCCAACTGCCACAA
64 GAAGAATGCGCAAGCC-AGGATCGGCTCGGTCCCCC-CTGCGTGCTGCTGATCCTACTGCCACAA
* * ** *
10396930 CCTTCGGTCTGG-CTGGGGCTTCGAC-ATGGA
127 CCCTCGGTCTGGTC-CGATCTTAGACTA-GGA
* *
10396960 ATGAACTCCTTATGCCTAAGCCAACCCACGAAACG-GACGTGCGGGCGCTCAGTCGACCGGAGAG
1 ATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAG-CGTGCGGGCGCTCAGTCGGCCGGAGAG
* * * * * * **
10397024 GTAGAATGCGTAAGCCGGGGATCAGCTCGGTCCCCCCTGCGTCCTGCTGATCCTACTACCGTAAC
64 GAAGAATGCGCAAGCC-AGGATCGGCTCGGTCCCCCCTGCGTGCTGCTGATCCTACTGCCACAAC
* *
10397089 CCTCGGTCTGGTTCGATCTTAGACTGGGA
128 CCTCGGTCTGGTCCGATCTTAGACTAGGA
*
10397118 AT-AGACTCCATATGC
1 ATGA-ACTCCGTATGC
10397133 TTAGACTGGG
Statistics
Matches: 263, Mismatches: 58, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
157 1 0.00
158 63 0.24
159 195 0.74
160 4 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
ATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGA
AGAATGCGCAAGCCAGGATCGGCTCGGTCCCCCCTGCGTGCTGCTGATCCTACTGCCACAACCCT
CGGTCTGGTCCGATCTTAGACTAGGA
Found at i:10397142 original size:26 final size:26
Alignment explanation
Indices: 10397106--10397158 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10397096 CTGGTTCGAT
10397106 CTTAGACTGGGAAT-AGACTCCATATG
1 CTTAGACTGGGAATGA-ACTCCATATG
*
10397132 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
10397158 C
1 C
10397159 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10397908 original size:26 final size:26
Alignment explanation
Indices: 10397867--10397919 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10397857 TCGGTTTAAT
*
10397867 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
10397893 CTTAGACTAAGG-ATGAACTCCGTATG
1 CTTAGACT-AGGAATGAACTCCGTATG
10397919 C
1 C
10397920 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:10398608 original size:26 final size:26
Alignment explanation
Indices: 10398569--10398621 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10398559 GGCTCAAAAT
10398569 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
10398595 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
10398621 C
1 C
10398622 CTAAGCCATC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:10398902 original size:26 final size:26
Alignment explanation
Indices: 10398865--10398917 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10398855 GGCTCAAAAT
* *
10398865 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACACCATATG
*
10398891 CTTAGACATGGAATGAACACCGTATG
1 CTTAGACATGGAATGAACACCATATG
10398917 C
1 C
10398918 CTAAGCCATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACACCATATG
Found at i:10399319 original size:159 final size:156
Alignment explanation
Indices: 10398890--10399335 Score: 380
Period size: 158 Copynumber: 2.8 Consensus size: 156
10398880 AACTCCATAT
* * * * * * * * * *
10398890 GCTTAGACATGGAATGAACACCGTATGCCTAAGCCATCCCACAAAATGAGTGTACAGACGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC-G
* * * *
10398955 CCGACCA-GAGAGGTAGAATGCACAAGCCGAGGATCGACCCGATCCCCC-CTACGTGCTATTGAT
65 CCGA-CAGGAGAGGCAAAATGCACAAGCCG-GGATCG-GCCGATCCCCCTCTACGTGCTATCGAT
* * *
10399018 CCTGCTCCCACAACCCTCAGTCCGATCTGA
127 CCCGCTCCCACAACCATCAGTCCGAGCTGA
* * * * * * *
10399048 TCTTAGA-TTGGGAATGAACTCCATATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTTA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC-TC
* * * * * * * *
10399112 GTCGGCTGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGCGTGCTATCGAT
64 GCCGACAGGAGAGGCAAAATGCACAAGCC-GGGATCGGCCGA-TCCCCCTCTACGTGCTATCGAT
* * *
10399177 CCCGCTGCCACAACCATCGGTCCG-GCTGGG
127 CCCGCTCCCACAACCATCAGTCCGAGCT-GA
* * *
10399207 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCGC
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCGC
* ** *
10399272 CGACAGGAGAGGCAAAATGCATAAGCCGGTGATCGGTCCGATCCCCC-CTGTGTGCTACCGATCC
66 CGACAGGAGAGGCAAAATGCACAAGCCGG-GATCGG-CCGATCCCCCTCTACGTGCTATCGATCC
10399336 TGTTACCGCA
Statistics
Matches: 224, Mismatches: 54, Indels: 21
0.75 0.18 0.07
Matches are distributed among these distances:
157 22 0.10
158 112 0.50
159 89 0.40
160 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCGC
CGACAGGAGAGGCAAAATGCACAAGCCGGGATCGGCCGATCCCCCTCTACGTGCTATCGATCCCG
CTCCCACAACCATCAGTCCGAGCTGA
Found at i:10399415 original size:26 final size:26
Alignment explanation
Indices: 10399365--10399417 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10399355 CCGGTTCGAT
*
10399365 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
10399391 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
10399417 C
1 C
10399418 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:10400583 original size:26 final size:26
Alignment explanation
Indices: 10400554--10400606 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10400544 CCGGTTCGAT
10400554 CTTAGACTG-GGAATGAACTTCGTATG
1 CTTAGACTGAGG-ATGAACTTCGTATG
*
10400580 CTTAGACTGAGGATTAACTTCGTATG
1 CTTAGACTGAGGATGAACTTCGTATG
10400606 C
1 C
10400607 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTTCGTATG
Found at i:10400950 original size:26 final size:26
Alignment explanation
Indices: 10400921--10400973 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10400911 CCGGTCTGAT
*
10400921 CTTAGAC-TGCGAATGAACTCTGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
10400947 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10400973 C
1 C
10400974 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10401338 original size:159 final size:159
Alignment explanation
Indices: 10400946--10401392 Score: 459
Period size: 159 Copynumber: 2.8 Consensus size: 159
10400936 AACTCTGTAT
* * *
10400946 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
10401011 CCGACCAGAGAGGCAGAATGCCTAAGCCAGGGATCGGCCCGATCCTCCTCTGCATGCTGTTGATC
66 CCGACCGGAGAGGCAGAATGCATAAGCCGGGGATCGGACCGATCCTCCTCTACGTGCTGTCGATC
* * ** * * *
10401076 CTGTTGCCGTAACCTTCGGTCTGGTCTGA
131 CCGCTGCCACAACCCTCAGTCCGGTCTGA
* * * * * * * *
10401105 TCTTAG-CCTGGGAATGAACTCTGTATGCCTAAGTCAACCAACGAATCGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
10401169 GTCGATCGGAGAGGCATAATGCATAAGCCGGGGATCAGACCGATCCTCCTCTACGTGCTGTCGGT
65 GCCGACCGGAGAGGCAGAATGCATAAGCCGGGGATCGGACCGATCCTCCTCTACGTGCTGTCGAT
*
10401234 CCCGCTGCCACAACCCTCAGTCCGG-CTGGG
130 CCCGCTGCCACAACCCTCAGTCCGGTCT-GA
* * * * *
10401264 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
10401329 CCAACCGGAGAGGCAGAATGCACAAGTCGGGAATTGGTCGGATCC-CCTCTACGTGCTGTTGATC
66 CCGACCGGAGAGGCAGAATGCATAAGCCGGGGATCGGACCGATCCTCCTCTACGTGCTGTCGATC
10401393 TACTGTCGTA
Statistics
Matches: 228, Mismatches: 57, Indels: 7
0.78 0.20 0.02
Matches are distributed among these distances:
158 21 0.09
159 205 0.90
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCATAAGCCGGGGATCGGACCGATCCTCCTCTACGTGCTGTCGATC
CCGCTGCCACAACCCTCAGTCCGGTCTGA
Found at i:10403059 original size:159 final size:158
Alignment explanation
Indices: 10402689--10403088 Score: 411
Period size: 158 Copynumber: 2.5 Consensus size: 158
10402679 AACTCCGTTT
* * * *
10402689 GCTTAGACATGGAATGAA-TTCCTAGGCCTAAGCAAACCCACGAAATGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* *
10402753 CCAGTCGAAGAGGCATAATGCGTAAGTCAGGGATCGACCTGGTCCCCCCTGTGTGTTGTCGATCC
66 CCAGTCGAAGAGGCATAATGCGTAAGTCAGGGATCGACCTGGTCCCCCCTGCGTGCTGTCGATCC
** * *
10402818 TGCTGTCACAACCCTCAGTCCAGTCCAA
131 CACTGCCACAAACCTCAGTCCAGTCCAA
* * * * * *
10402846 TCTTAGA-TTGGGAATGAAC-TCCGTATGCCAAAGTCAACACATGAAATGAGCGTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTTCC-TATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTC
* * * *
10402909 AGCCGGTCGGAGAGGCATAATGCTTAAGTCAGGGATC-AGCCTGTTCCCCCTCTGCGTGCTGTCG
64 AGCCAGTCGAAGAGGCATAATGCGTAAGTCAGGGATCGA-CCTGGTCCCCC-CTGCGTGCTGTCG
* * ***
10402973 GTCCCACTGCCACAAACCTCGGTCCAG-CTGGG
127 ATCCCACTGCCACAAACCTCAGTCCAGTC-CAA
* * * *
10403005 GCTTAGACATGGAATGAACTTCCTATACCTAAGCCAACCCATGAAACG-GACGTGCGAGCACTCA
1 GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCATGAAATGAG-CGTGCGGGCGCTCA
*
10403069 GCCA-TCGGAA-AGGCAGAATG
65 GCCAGTC-GAAGAGGCATAATG
10403089 TGCAAGCCGA
Statistics
Matches: 195, Mismatches: 38, Indels: 19
0.77 0.15 0.08
Matches are distributed among these distances:
156 1 0.01
157 18 0.09
158 89 0.46
159 83 0.43
160 4 0.02
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCAGTCGAAGAGGCATAATGCGTAAGTCAGGGATCGACCTGGTCCCCCCTGCGTGCTGTCGATCC
CACTGCCACAAACCTCAGTCCAGTCCAA
Found at i:10403203 original size:26 final size:26
Alignment explanation
Indices: 10403162--10403214 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10403152 CCGGTTCGAT
10403162 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
** *
10403188 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
10403214 C
1 C
10403215 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:10403571 original size:26 final size:26
Alignment explanation
Indices: 10403542--10403594 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10403532 CTGGTCTGAT
10403542 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
10403568 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
10403594 C
1 C
10403595 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:10403645 original size:183 final size:184
Alignment explanation
Indices: 10403111--10403659 Score: 590
Period size: 197 Copynumber: 2.9 Consensus size: 184
10403101 ATCGGTTCAG
* * * * ** *
10403111 TCCC-CCTGCATGCTGTCGATCCTACTGTCGTAACCTTCAATCCGGT-TCGATCTTAGACTGGAA
1 TCCCTCCTGCATGCTGCCGATCCTACTATCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGA
10403174 ATGAACTCCA-TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
65 ATGAACT-CAGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * *
10403238 GTGCAGGCGCTCAGCC-AGCCAAAGAGGCAGAATGCGTAAGTCGGGGATCGGCCTGG
129 GTGCGGGCGCTCAGCCGA-CCAGAGAGGCAGAATGCGTAAGTCAGGGATCAGCCCGA
* * * *
10403294 TCCCTCCCTGCGTGCTGCCAATCCTGCTACTGGTCTTGCTGCTGCAACCCTCGGTCCGGTCCGAT
1 TCCCT-CCTGCATGCTGCCGAT-C--CTA-----C-T-AT-C-GCAACCCTCGGTCCGGTCTGAT
* * * **
10403359 CTTAGATTGGGAGTGAACTCAGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAACCCAACC
53 CTTAGACTGGGAATGAACTCAGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACC
* * * ** *
10403423 CATGAAACGAGCGTGCGGACGCTCAGTCGGTCGGAGAGGCAGAATGCGTAAGTCAGGGATCAGCC
117 CACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGTAAGTCAGGGATCAGCC
10403488 CGA
182 CGA
*
10403491 TCCCTCCTGCATGCTGCCGAT-CTACTATCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAA
1 TCCCTCCTGCATGCTGCCGATCCTACTATCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAA
* * *
10403555 TGAACTCTGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCAACGAAACGAGCGT
66 TGAACTCAGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
*
10403620 GCGGGCGCTCAGCCGACCAGAGAGGCATG-ATGCGCAAGTC
131 GCGGGCGCTCAGCCGACCAGAGAGGCA-GAATGCGTAAGTC
10403660 GAGGATCGAA
Statistics
Matches: 299, Mismatches: 47, Indels: 40
0.77 0.12 0.10
Matches are distributed among these distances:
182 1 0.00
183 123 0.41
184 2 0.01
185 14 0.05
186 2 0.01
187 1 0.00
188 3 0.01
192 3 0.01
193 1 0.00
194 1 0.00
195 1 0.00
196 17 0.06
197 129 0.43
198 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (184 bp):
TCCCTCCTGCATGCTGCCGATCCTACTATCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAA
TGAACTCAGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
GCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGTAAGTCAGGGATCAGCCCGA
Found at i:10404303 original size:26 final size:26
Alignment explanation
Indices: 10404265--10404317 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10404255 GGCTCAAAGT
10404265 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10404291 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10404317 C
1 C
10404318 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10405013 original size:184 final size:184
Alignment explanation
Indices: 10404753--10405159 Score: 491
Period size: 185 Copynumber: 2.2 Consensus size: 184
10404743 GTAACTCTTG
* * *
10404753 GTCCGGTCTGATCTTAGACTGGGAATGAACTCC-TATGCTTAGACTGGAGATGAACTCCGGATGC
1 GTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGAGATGAACTCCAGATGC
* *
10404817 CTAAGTCAACCCACAAAATGAGCGTGCGGG-GCTCAACC-GACCGGAGAGGCAGAATGCGTAAGT
66 CTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAACCAG-CCGGAGAGGCAGAATGCGTAAGT
* * ** * *
10404880 TGGGGATCGGCCCGATCCCCACCTGT-GTGCTACCGATCCTATTGCTGCAAACCTCA
130 CGAGGATCAACCCGAT-CCC-CCTGTAGTGCTACCGATCCGATTGCCGCAAACCTCA
* * * *
10404936 GTCTGATCTGATCTTAGACTGGGAATGTACTCCGTATGCTTAGATATGGA-ATGAACTTCATATG
1 GTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-ATGGAGATGAACTCCAGATG
* * * *
10405000 CCTAAGCCAACCCACTAAACGAGCGTGCGGGCGCTCAGCCAGCTGGAGAGGCAGAATTCGTAAGT
65 CCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAACCAGCCGGAGAGGCAGAATGCGTAAGT
* * * * *
10405065 CGAGGATCAACCTGATCCCCCTTTACGTGCTATCGATCCGATTGCCGCAACCCTCG
130 CGAGGATCAACCCGATCCCCCTGTA-GTGCTACCGATCCGATTGCCGCAAACCTCA
* * *
10405121 GTCCGATCCGATCTTAGATTGGGAATGAACTCTGTATGC
1 GTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
10405160 CTAAGTCAAC
Statistics
Matches: 189, Mismatches: 29, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
183 34 0.18
184 52 0.28
185 102 0.54
186 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.23
Consensus pattern (184 bp):
GTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGAGATGAACTCCAGATGC
CTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAACCAGCCGGAGAGGCAGAATGCGTAAGTC
GAGGATCAACCCGATCCCCCTGTAGTGCTACCGATCCGATTGCCGCAAACCTCA
Found at i:10405275 original size:159 final size:159
Alignment explanation
Indices: 10404974--10405468 Score: 370
Period size: 159 Copynumber: 3.1 Consensus size: 159
10404964 ACTCCGTATG
*
10404974 CTTAGATATGGAATGAACTTCATATGCCTAAGCCAACCCACTAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGATATGGAATGAACTTCATATGCCTAAGCCAACCCACTAAACGAGCGTGCGAGCGCTCAGC
* * *
10405039 CAGCTGGAGAGGCAGAATTCGTAAGTCGAGGATCAACCTGATCCCCCTTTACGTGCTATCGATCC
66 CAGCTGGAGAGGCAGAATGCGCAAGCCGAGGATCAACCTGATCCCCCTTTACGTGCTATCGATCC
* *
10405104 GATTGCCGCAACCCTCGGTCCGATCCGAT
131 GACTGCCACAACCCTCGGTCCGATCCGAT
* * * *
10405133 CTTAGAT-TGGGAATGAAC-TCTGTATGCCTAAGTCAACCCA-TGAAACGAGCGTTCGAGCGCTG
1 CTTAGATAT-GGAATGAACTTC-ATATGCCTAAGCCAACCCACT-AAACGAGCGTGCGAGCGCTC
* * *
10405195 AGCCAG-TCGGAGAGGCATAATGCGCAAGCCGAGGATC-AGCTCGAT-CCCCTTCTACGTGCTGT
63 AGCCAGCT-GGAGAGGCAGAATGCGCAAGCCGAGGATCAACCT-GATCCCCCTT-TACGTGCTAT
* * ** * * * **
10405257 GGGTCCCG-CTGCCACAACCCTCAATTCG-GCTGGGG
125 CGAT-CCGACTGCCACAACCCTCGGTCCGATC-CGAT
* * * * * * * * **
10405292 CTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTGCGGGAACTCAG-
1 CTTAGATATGGAATGAACTTCATATGCCTAAGCCAACCCACTAAACGAGCGTGCGAGCGCTCAGC
* * * * * * * *
10405356 CAGGTCGAAGAGGTACAATGCGTAAGCTG-GAGATCAACCTGATCCCCC-ATGCGTGCTGA-CGA
66 CAGCT-GGAGAGGCAGAATGCGCAAGCCGAG-GATCAACCTGATCCCCCTTTACGTGCT-ATCGA
* * * *
10405418 TCCTATTGTCC-CAACCCTCAGTCTGATCCGAT
128 TCCGACTG-CCACAACCCTCGGTCCGATCCGAT
*
10405450 CTTAGACT-GGGAATGAACT
1 CTTAGA-TATGGAATGAACT
10405469 CCGTATGCTT
Statistics
Matches: 258, Mismatches: 58, Indels: 41
0.72 0.16 0.11
Matches are distributed among these distances:
157 2 0.01
158 57 0.22
159 187 0.72
160 12 0.05
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.21
Consensus pattern (159 bp):
CTTAGATATGGAATGAACTTCATATGCCTAAGCCAACCCACTAAACGAGCGTGCGAGCGCTCAGC
CAGCTGGAGAGGCAGAATGCGCAAGCCGAGGATCAACCTGATCCCCCTTTACGTGCTATCGATCC
GACTGCCACAACCCTCGGTCCGATCCGAT
Found at i:10405479 original size:26 final size:26
Alignment explanation
Indices: 10405450--10405502 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10405440 CTGATCCGAT
10405450 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
10405476 CTTAGACTGGGGATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10405502 C
1 C
10405503 CTAACTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10405605 original size:184 final size:183
Alignment explanation
Indices: 10405396--10406030 Score: 672
Period size: 185 Copynumber: 3.4 Consensus size: 183
10405386 AGATCAACCT
* * * *
10405396 GATCCCCCATGCGTGCTGACGATCCTATTGTCC-CAACCCTCAGTCTGATCCGATCTTAGACTGG
1 GATCCCCCCTGCGTGCTGTCGATCCTACTG-CCGCAACCCTCAGTCCGATCCGATCTTAGACTGG
* * *
10405460 GAATGAACTCCGTATGCTTAGACTGGGGATGAATTTCGTATGCCTAACTTAACCCACGAAATGAG
65 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAACTCAACCCACAAAATGAG
* * *
10405525 CGTGCAGGCGCTCAGCCGGTCGAAGAGACAGAATGCACGAGCCGGGGATCGGCTC
130 CGTGCGGGCGCTCAGCCGGTCGAAGAGGCAGAAT-CACGAGCCGAGGATCGGCTC
* * * *
10405580 GATCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTTCGATCCGATCTTAGACTAGG
1 GATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGG
* * * *
10405645 AATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGGATGCCTAAGTGAACCCACAAAATGAGC
66 AATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAACTCAACCCACAAAATGAGC
* ** *
10405710 GTGCGGGCGCTCAACCGGTC-AGAGAGGCAGAAT-ACGTAAGTTGTGGATCGG-TCC
131 GTGCGGGCGCTCAGCCGGTCGA-AGAGGCAGAATCACG--AGCCGAGGATCGGCT-C
** * * *
10405764 GATCCCCACCTGCGTGCTACCGATCCTACTGCTGCAAACCTCAGTCCGATCTGATCTTAGACTGG
1 GATCCCC-CCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGG
* * * * * * *
10405829 GAATGTACTCTGTATGCTTAGA-TATGGAATGACCTTCGTATGCCTAAGC-CAACCCACTAAACG
65 GAATGAACTCCGTATGCTTAGACT-GGGGATGAACTTCGTATGCCTAA-CTCAACCCACAAAATG
* * * *** * *
10405892 AGTGTGCGGGCGCTCAGCCAG-CTGGAGAGGCAGAATTCTTAAGCCGAGGATCGACCC
128 AGCGTGCGGGCGCTCAGCCGGTC-GAAGAGGCAGAA-TCACGAGCCGAGGATCGGCTC
* * * ** *
10405949 GATCCCCCTTTGTGTGCTGTCGATCCGACTGCCGCAACCCTTGGTCCGATCCGATCTTAGATTGG
1 GATCCCCC-CTGCGTGCTGTCGATCCTACTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGG
*
10406014 GAATGAACTCTGTATGC
65 GAATGAACTCCGTATGC
10406031 CTAAGTCAAC
Statistics
Matches: 373, Mismatches: 64, Indels: 27
0.80 0.14 0.06
Matches are distributed among these distances:
182 3 0.01
183 4 0.01
184 162 0.43
185 203 0.54
186 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (183 bp):
GATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAACTCAACCCACAAAATGAGC
GTGCGGGCGCTCAGCCGGTCGAAGAGGCAGAATCACGAGCCGAGGATCGGCTC
Found at i:10405663 original size:26 final size:26
Alignment explanation
Indices: 10405634--10405686 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10405624 TCGATCCGAT
*
10405634 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGGATG
* *
10405660 CTTAGACTGGGGATGAACTCCGGATG
1 CTTAGACTAGGAATGAACTCCGGATG
10405686 C
1 C
10405687 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGGATG
Found at i:10405874 original size:185 final size:182
Alignment explanation
Indices: 10405314--10406030 Score: 715
Period size: 184 Copynumber: 3.9 Consensus size: 182
10405304 ATGAGCTCCC
* * * * ** * * * *
10405314 TATGCCTAAGCCAACCCACAAAACGGGTGTGCGGGAACTCAGCAGGTCGAAGAGGTACAATGCGT
1 TATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGTCG-AGAGGCAGAATACGT
* ** * * * *
10405379 AAGCTG-GAGATCAACCTGATCCCCCATGCGTGCTGACGATCCTATTGTCC-CAACCCTCAGTCT
65 AAGCCGAG-GATCGGCC-GATCCCCCCTGCGTGCTGTCGATCCTACTG-CCGCAACCCTCAGTCC
*
10405442 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAATTTCG
127 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCG
* * * * *
10405498 TATGCCTAACTTAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGGTCGAAGAGACAGAATGCAC
1 TATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGTCG-AGAGGCAGAAT--AC
* * * *
10405563 G--AGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTTC
63 GTAAGCCGAGGATCGGC-CGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCAGTCC
* *
10405626 GATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCG
127 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCG
* * *
10405682 GATGCCTAAGTGAACCCACAAAATGAGCGTGCGGGCGCTCAACCGGTCAGAGAGGCAGAATACGT
1 TATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGTC-GAGAGGCAGAATACGT
** * ** * *
10405747 AAGTTGTGGATCGGTCCGATCCCCACCTGCGTGCTACCGATCCTACTGCTGCAAACCTCAGTCCG
65 AAGCCGAGGATCGG-CCGATCCCC-CCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCAGTCCG
* * * * * *
10405812 ATCTGATCTTAGACTGGGAATGTACTCTGTATGCTTAGA-TATGGAATGACCTTCG
128 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGGATGAACTTCG
* * * * * * * *
10405867 TATGCCTAAGCCAACCCACTAAACGAGTGTGCGGGCGCTCAGCCAGCTGGAGAGGCAGAATTCTT
1 TATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCC-GGTCGAGAGGCAGAATACGT
* * * * **
10405932 AAGCCGAGGATCGACCCGATCCCCCTTTGTGTGCTGTCGATCCGACTGCCGCAACCCTTGGTCCG
65 AAGCCGAGGATCG-GCCGATCCCCC-CTGCGTGCTGTCGATCCTACTGCCGCAACCCTCAGTCCG
* *
10405997 ATCCGATCTTAGATTGGGAATGAACTCTGTATGC
128 ATCCGATCTTAGACTGGGAATGAACTCCGTATGC
10406031 CTAAGTCAAC
Statistics
Matches: 439, Mismatches: 80, Indels: 27
0.80 0.15 0.05
Matches are distributed among these distances:
182 3 0.01
183 2 0.00
184 217 0.49
185 213 0.49
186 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (182 bp):
TATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGTCGAGAGGCAGAATACGTA
AGCCGAGGATCGGCCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCAGTCCGATC
CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCG
Found at i:10406350 original size:26 final size:26
Alignment explanation
Indices: 10406321--10406373 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10406311 CTGATCCGAT
10406321 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* * *
10406347 CTTAGACTGGGGATGAATTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
10406373 C
1 C
10406374 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:10406536 original size:871 final size:866
Alignment explanation
Indices: 10404789--10407296 Score: 3057
Period size: 871 Copynumber: 2.9 Consensus size: 866
10404779 GAACTCCTAT
*
10404789 GCTTAGACTGGAGATGAACTCCGGATGCCTAAGTCAACCCACAAAATGAGCGTGCGGG-GCTCAA
1 GCTTAGACTGGGGATGAACTCCGGATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAA
* *
10404853 CCGACCGGAGAGGCAGAATGCGTAAGTTGGGGATCGGCCCGATCCCCACCTGTGTGCTACCGATC
66 CCGGCCGGAGAGGCAGAATGCGTAAGTT-GGGATCGGCCCGATCCCCACCTGCGTGCTACCGATC
* *
10404918 CTATTGCTGCAAACCTCAGTCTGATCTGATCTTAGACTGGGAATGTACTCCGTATGCTTAGATAT
130 CTACTGCTGCAAACCTCAGTCCGATCTGATCTTAGACTGGGAATGTACTCCGTATGCTTAGATAT
*
10404983 GGAATGAACTTCATATGCCTAAGCCAACCCACTAAACGAGCGTGCGGGCGCTCAGCCAGCTGGAG
195 GGAATGAACTTCGTATGCCTAAGCCAACCCACTAAACGAGCGTGCGGGCGCTCAGCCAGCTGGAG
* * * * *
10405048 AGGCAGAATTCGTAAGTCGAGGATCAACCTGATCCCCCTTTACGTGCTATCGATCCGATTGCCGC
260 AGGCAGAATTC-TAAGTCGAGGATCGACCCGATCCCCCTTTATGTGCTGTCGATCCGACTGCCGC
*
10405113 AACCCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAA
324 AACCCTTGGTCCGATCCGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAA
*
10405178 CGAGCGTTCGAGCGCTGAGCCAGTCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCTCGATCCC
389 CGAGCGTTCGAGCGCTGAGCCAGTCGGAGAGGCATAATGCGCAAGCCGAGGGTCAGCTCGATCCC
* *
10405243 CTTCTACGTGCTGTGGGTCCCGCTGCCACAACCCTCAAT-TCGGCTGGGGCTTAGACATGGAATG
454 CTTCTACGTGCTATGGGTCCCGCTGCCACAACCCTCGATCT-GGCTGGGGCTTAGACATGGAATG
** * *
10405307 AGCTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTGCGGGAACTCAGCAGGTCGAAGAGGTAC
518 AGCTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTGCGGGCGCTCAGCAGGTCGAAGAGGCAG
* * * * *
10405372 AATGCGTAAGCTGGAGATCAACCTGATCCCCCATGCGTGCTGACGATCCTATTGTCCCAACCCTC
583 AATGCGTAAGCTGGGGATCGACCCGATCCCCCATGCGTGCTGACGATCCTACTGTCGCAACCCTC
*
10405437 AGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAATTTCGTATG
648 AGTCTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAATTTCGTATG
* * **
10405502 CCTAACTTAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGGTC-GA-A-G-AGACAGAATGCAC
713 CCTAAGTTAACCCACGAAATGAGCGTGCAGGCGCTCAACCGACCAGAGAGGCAGACAGAATGCAC
* * * * * * * *
10405563 GAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTTCGA
778 AAGCCGAGGATCAGCTCGATCCCCCCTACGTGCTGTCGATCCCGCTGCCG-AACCCTCGCTGCCA
* *
10405628 TCCGATCTTAGACTAGGAATGAACTCCGTAT
842 TCC-A-CTTAGACTACG-A-G-ACT-CGTAG
*
10405659 GCTTAGACTGGGGATGAACTCCGGATGCCTAAGTGAACCCACAAAATGAGCGTGCGGGCGCTCAA
1 GCTTAGACTGGGGATGAACTCCGGATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAA
* * * *
10405724 CCGGTCAGAGAGGCAGAATACGTAAGTTGTGGATCGGTCCGATCCCCACCTGCGTGCTACCGATC
66 CCGGCCGGAGAGGCAGAATGCGTAAGTTG-GGATCGGCCCGATCCCCACCTGCGTGCTACCGATC
*
10405789 CTACTGCTGCAAACCTCAGTCCGATCTGATCTTAGACTGGGAATGTACTCTGTATGCTTAGATAT
130 CTACTGCTGCAAACCTCAGTCCGATCTGATCTTAGACTGGGAATGTACTCCGTATGCTTAGATAT
* *
10405854 GGAATGACCTTCGTATGCCTAAGCCAACCCACTAAACGAGTGTGCGGGCGCTCAGCCAGCTGGAG
195 GGAATGAACTTCGTATGCCTAAGCCAACCCACTAAACGAGCGTGCGGGCGCTCAGCCAGCTGGAG
* *
10405919 AGGCAGAATTCTTAAGCCGAGGATCGACCCGATCCCCCTTTGTGTGCTGTCGATCCGACTGCCGC
260 AGGCAGAATTC-TAAGTCGAGGATCGACCCGATCCCCCTTTATGTGCTGTCGATCCGACTGCCGC
10405984 AACCCTTGGTCCGATCCGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAA
324 AACCCTTGGTCCGATCCGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAA
* * * *
10406049 CGAGCGTTCGAGTGCTGAGCTAGTCGGAGAGGCATAATGAGCAAGCTGAGGGTCAGCTCGATCCC
389 CGAGCGTTCGAGCGCTGAGCCAGTCGGAGAGGCATAATGCGCAAGCCGAGGGTCAGCTCGATCCC
* *
10406114 TTTCTACGTGCTATGGGTCCCGTTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGA
454 CTTCTACGTGCTATGGGTCCCGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGA
* *
10406179 GCTCCCTATGCCTAAGCCAACCCACAAAATGGGTGTGCGGGCGCTTAGCAGGTCGAAGAGGCAGA
519 GCTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTGCGGGCGCTCAGCAGGTCGAAGAGGCAGA
* *
10406244 ATGTGTAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTGACGATCCTACTGTCGCAACCCTCA
584 ATGCGTAAGCTGGGGATCGACCCGATCCCCCATGCGTGCTGACGATCCTACTGTCGCAACCCTCA
*
10406309 GTCTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAATTTTGTATGC
649 GTCTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAATTTCGTATGC
*
10406374 CTAAGTTAACACACGAAATGAGCGTGCAGGCGCTCAACCGACCAGAGAGGCCAGTCAGTGTGGCA
714 CTAAGTTAACCCACGAAATGAGCGTGCAGGCGCTCAACCGACCAGAGAGG-CAG--A------CA
* * * * * * **
10406439 TAATGCATAAGTCGAGGATCAGCTCTG-TCTCCCTCTACGTGCTGTCGATCCCGTTGTCG-GTCC
770 GAATGCACAAGCCGAGGATCAGCTC-GATC-CCCCCTACGTGCTGTCGATCCCGCTGCCGAACCC
* *
10406502 T-GCTGCCATAACC-CTT-GA-TTCG-G-CT-G-GG
833 TCGCTGCCAT--CCACTTAGACTACGAGACTCGTAG
* * * * * *
10406530 GCTTAGAC-GTGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCA
1 GCTTAGACTG-GGGATGAACTCCGGATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCA
** * * * ** * * * **
10406594 GTCAGCCGGAGAGGCAGAATGCGCATGCCAGGGATCAGCCCGGTCACCC-CCTCCGTGCTGTCGA
65 ACCGGCCGGAGAGGCAGAATGCGTAAG-TTGGGATCGGCCCGATC-CCCACCTGCGTGCTACCGA
** * * * * *
10406658 TCCTACTGCCACAACCCTC-GATCCGATCCGATCTTAGATTGGGAAAGAACTCCGTATGCTTAGA
128 TCCTACTGCTGCAAACCTCAG-TCCGATCTGATCTTAGACTGGGAATGTACTCCGTATGCTTAGA
* * * ** *
10406722 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTACTCAGCC-GATC
192 TATGGAATGAACTTCGTATGCCTAAGCCAACCCACTAAACGAGCGTGCGGGCGCTCAGCCAGCT-
* * * * *
10406786 GGAGAGGCAGAATGTGC-AAGTCGGGGATCGACCCGGTCCCCC-CTATGTACTGTCAATCCTG-C
256 GGAGAGGCAGAAT-T-CTAAGTCGAGGATCGACCCGATCCCCCTTTATGTGCTGTCGATCC-GAC
* * * *
10406848 TACTGCAA-CCTTCAGT-CTAGTCCGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAAC
318 TGCCGCAACCCTT-GGTCCGA-TCCGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAAC
** * * * * **
10406911 CCACAAAACGAGCGTGCGGGCGCTGAGCCAGCCGGAGAGGCATAATGCGTAAGCCG-GGGATTGG
381 CCATGAAACGAGCGTTCGAGCGCTGAGCCAGTCGGAGAGGCATAATGCGCAAGCCGAGGG-TCAG
* * * * * *
10406975 CTCGATCCCCCTCTGCGT--TTTGCCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAG
445 CTCGATCCCCTTCTACGTGCTATG--GGTCCCGCTGCCACAACCCTCGATCTGGCTGGGGCTTAG
* * * **
10407038 ACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAGTC-GAC
508 ACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTGCGGGCGCTCAG-CAGGT
* * * * * *
10407102 CGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCC-AGTCCCCTATGCATGCTGTCGATCCTACT
572 CGAAGAGGCAGAATGCGTAAGCTGGGGATCGACCCGA-TCCCCCATGCGTGCTGACGATCCTACT
* * * * *
10407166 GCCGCAACCCTAAGTC-CAGTTCGATCTTAGACTGTGAATGAACT-TCGTATGCTTAGACTGGGG
636 GTCGCAACCCTCAGTCTGA-TCCGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGG
* * * * * * * *
10407229 ATAAACTCCGTATGCCTAAGTCAACCCACAAAACGAGTGTGC-GGACGCTCAACCGACTAGAGAG
699 ATGAATTTCGTATGCCTAAGTTAACCCACGAAATGAGCGTGCAGG-CGCTCAACCGACCAGAGAG
10407293 GCAG
763 GCAG
10407297 GATGCGCAAG
Statistics
Matches: 1428, Mismatches: 172, Indels: 77
0.85 0.10 0.05
Matches are distributed among these distances:
868 3 0.00
869 17 0.01
870 439 0.31
871 886 0.62
872 9 0.01
873 2 0.00
874 3 0.00
876 3 0.00
878 1 0.00
879 2 0.00
880 2 0.00
881 3 0.00
882 5 0.00
883 3 0.00
884 25 0.02
885 25 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (866 bp):
GCTTAGACTGGGGATGAACTCCGGATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAA
CCGGCCGGAGAGGCAGAATGCGTAAGTTGGGATCGGCCCGATCCCCACCTGCGTGCTACCGATCC
TACTGCTGCAAACCTCAGTCCGATCTGATCTTAGACTGGGAATGTACTCCGTATGCTTAGATATG
GAATGAACTTCGTATGCCTAAGCCAACCCACTAAACGAGCGTGCGGGCGCTCAGCCAGCTGGAGA
GGCAGAATTCTAAGTCGAGGATCGACCCGATCCCCCTTTATGTGCTGTCGATCCGACTGCCGCAA
CCCTTGGTCCGATCCGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACG
AGCGTTCGAGCGCTGAGCCAGTCGGAGAGGCATAATGCGCAAGCCGAGGGTCAGCTCGATCCCCT
TCTACGTGCTATGGGTCCCGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAGC
TCCCTATGCCTAAGCCAACCCACAAAACGGGTGTGCGGGCGCTCAGCAGGTCGAAGAGGCAGAAT
GCGTAAGCTGGGGATCGACCCGATCCCCCATGCGTGCTGACGATCCTACTGTCGCAACCCTCAGT
CTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAATTTCGTATGCCT
AAGTTAACCCACGAAATGAGCGTGCAGGCGCTCAACCGACCAGAGAGGCAGACAGAATGCACAAG
CCGAGGATCAGCTCGATCCCCCCTACGTGCTGTCGATCCCGCTGCCGAACCCTCGCTGCCATCCA
CTTAGACTACGAGACTCGTAG
Found at i:10406749 original size:185 final size:184
Alignment explanation
Indices: 10406530--10406900 Score: 453
Period size: 185 Copynumber: 2.0 Consensus size: 184
10406520 TTCGGCTGGG
* * *
10406530 GCTTAGACGTGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
* * * *
10406595 TCAG-CCGGAGAGGCAGAATGCGCATGCCAGGGATC-AGCCCGGTCACCCCCTCCGTGCTGTCGA
66 -CAGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGA-CCCGGTC-CCCCCTACGTACTGTCAA
*
10406658 TCCTACTGCCACAACCCTC-GATCCGA-TCCGATCTTAGATTGGGAAAGAACTCCGTAT
128 TCCTACTACCACAACCCTCAG-T-CGAGTCCGATCTTAGATTGGGAAAGAACTCCGTAT
* * *
10406715 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTACTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
* * * * * *
10406780 CCGATCGGAGAGGCAGAATGTGCAAGTCGGGGATCGACCCGGTCCCCCCTATGTACTGTCAATCC
66 CAGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTACTGTCAATCC
* ** * * * *
10406845 TGCTACTGCAACCTTCAGTCTAGTCCGATCTTAGATTGGGAATGAACTCTGTAT
131 TACTACCACAACCCTCAGTCGAGTCCGATCTTAGATTGGGAAAGAACTCCGTAT
10406899 GC
1 GC
10406901 CTAAGTCAAC
Statistics
Matches: 158, Mismatches: 24, Indels: 9
0.83 0.13 0.05
Matches are distributed among these distances:
183 2 0.01
184 62 0.39
185 93 0.59
186 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
CAGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTACTGTCAATCC
TACTACCACAACCCTCAGTCGAGTCCGATCTTAGATTGGGAAAGAACTCCGTAT
Found at i:10407143 original size:159 final size:156
Alignment explanation
Indices: 10406706--10407143 Score: 421
Period size: 159 Copynumber: 2.8 Consensus size: 156
10406696 TTGGGAAAGA
10406706 ACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG
1 ACTCCG-A-GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG
** * * * *
10406771 GGTACTCAGCCGATCGGAGAGGCAGAATGTGCAAGTCGGGGATCGACCCGGTCCCCCCTATGTAC
64 GGCGCTCAG-CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCC-GTCCCCCCTACGTAC
* * ** * *
10406836 TGTCAATCCTGCTACTGCAACCTTCAGTCT
127 TGCCAATCCCGCTACCACAACCCTCAGTCG
* * * * * *
10406866 AGTCCGATCTTAGA-TTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGG
1 ACTCCGAGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG
* * * * * * * * **
10406930 GCGCTGAGCCAGCCGGAGAGGCATAATGCGTAAGCCGGGGATTGGCTCGATCCCCCTCTGCGTTT
65 GCGCTCAGCGA-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCG-TCCCCC-CTACGTAC
** * *
10406995 TGCCGGTCCCGCTGCCACAACCCTCGGTCCG
127 TGCCAATCCCGCTACCACAACCCTCAGT-CG
* * * * * *
10407026 ACT-GGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACGGGTGTGCGGG
1 ACTCCGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG
10407090 CGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCC
66 CGCTCAG-CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCC-GTCCCC
10407144 TATGCATGCT
Statistics
Matches: 219, Mismatches: 51, Indels: 17
0.76 0.18 0.06
Matches are distributed among these distances:
157 4 0.02
158 89 0.41
159 114 0.52
160 12 0.05
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (156 bp):
ACTCCGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG
CGCTCAGCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGTCCCCCCTACGTACTGCC
AATCCCGCTACCACAACCCTCAGTCG
Found at i:10407220 original size:26 final size:26
Alignment explanation
Indices: 10407191--10407243 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10407181 CCAGTTCGAT
* * *
10407191 CTTAGACTGTGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
10407217 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
10407243 C
1 C
10407244 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:10407954 original size:26 final size:26
Alignment explanation
Indices: 10407914--10407966 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10407904 GGCTCAAACT
10407914 CTTAGACTGGCAATGAAATCCGTATG
1 CTTAGACTGGCAATGAAATCCGTATG
*
10407940 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGCAATGAAATCCGTATG
10407966 C
1 C
10407967 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAAATCCGTATG
Found at i:10409189 original size:159 final size:156
Alignment explanation
Indices: 10408820--10409221 Score: 421
Period size: 159 Copynumber: 2.5 Consensus size: 156
10408810 AACTCTGTAT
* *
10408820 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * *
10408885 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGACCGGTCCGGTCCCCCCACATGCTGTCAATCCT
66 CCG-CCGGAGAGGCAGAATGCGCAAGCCGAGGACCGGCCCGATCCCCCCACATGCTATCAATCCT
* ** * * * *
10408950 GCTGCTGCAACCTTTGGTCTGATTTGA
130 ACTGCCACAACCCTCGGTCTGACTCGA
* * * ** * * *
10408977 TCTTAGAC-TGGGAATGAATTTCGTATGCCTAAGTTAACCCATGAAATGAGCGTGTGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * *
10409041 GCCAGCCGGAGAGGCATAATGCGTAAGCCGAGGATCGGCCCGATCCCCCTCTACGTGCTATCAGT
65 GCC-GCCGGAGAGGCAGAATGCGCAAGCCGAGGACCGGCCCGATCCCCC-C-ACATGCTATCAAT
*
10409106 CCTACTGCCACAACCCTCGGT-TCGACTCGG
127 CCTACTGCCACAACCCTCGGTCT-GACTCGA
* * * * * *
10409136 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAATCAACGAAACGGGCGTGCGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
10409201 CCGGCCGGAGAGGCAGAATGC
66 CC-GCCGGAGAGGCAGAATGC
10409222 ATAAATCAGG
Statistics
Matches: 195, Mismatches: 44, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
156 1 0.01
157 92 0.47
158 3 0.02
159 98 0.50
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGCCGGAGAGGCAGAATGCGCAAGCCGAGGACCGGCCCGATCCCCCCACATGCTATCAATCCTA
CTGCCACAACCCTCGGTCTGACTCGA
Found at i:10409221 original size:684 final size:689
Alignment explanation
Indices: 10407913--10409409 Score: 1811
Period size: 684 Copynumber: 2.2 Consensus size: 689
10407903 TGGCTCAAAC
* *
10407913 TCTTAGACT-GGCAATGAAATCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAACCAAC
1 TCTTAGACTAGG-AATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
** * * * * * *
10407977 CCGTGAAACGAACGTGCGGGCGCTCAGT-TAGCC-GAAGAGGCAGAATGCACAAGTCGGGGATCG
65 CCACGAAACGAGCGTGCGGGCGCTCAGTCGA-CCAG-AGAGGAAG-ATGCGCAAGCCAGGGATCG
* * * * * **
10408040 ACCCGATCCCCCCTGCCTGCTGTCGATCCTGGTACTGGTCTTGCTGTAGCAACCCTTGGTCCGGT
127 ACCCGATCCCCCCTGCCTGCTGTCGATCCTGCTACTGGTCCTGCTGTACCAACCCTCGATCCAAT
* * *
10408105 CCGATCTTAGAATGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTGTGCCTAAGCC
192 CCGATCTTAGAATAGGAAAGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
* * * * * * * *
10408170 AACCCACGAAACGAGCGTGCGGGCGCTTAGTCGGTTGGAAAGGCAGAATGTGCAAGCCAGGAACT
257 AACCCACGAAACGAACGTACGGGCGCTCAGCCGATCGGAAAGGCAGAATGCGCAAGCCAGGAACC
**** * * *
10408235 GGCCTGATCCCTCCTGTGTGCTGTCGATCCGGTTGCTGCAACCCTTGGTCTGGTTTGATCTTAAA
322 GGCCTGATCCCTCCCACATGCTGTCAATCCGGCTGCTGCAACCCTTGGTCTGATTTGATCTTAAA
* *
10408300 CTGGGAATCAACTCCGTATGCCTAAGCTAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCG
387 CTGGGAATCAACTCCGTATGCCTAAGCTAACCCACGAAATGAGCGTGCGGGCGCTCAGCCAGCCG
* * * * * **
10408365 AAGAGATAGAATGCGCAAGTCAAGGATCGGCCCGGTCGCCCTCTACGTGCTGTTGGTCTCACTGC
452 AAGAGACAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCCTCTACGTGCTATCAGTCTCACTGC
* * *
10408430 CACAACCCTCGATCCATCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
517 CACAACCCTCGATCCATCTCGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACG
* * * *
10408495 AAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGT
582 AAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCATAAACCAGGGATCGACCCGGT
* *
10408560 CCC-C-C-CTG-CG-TGCTGTCGCAACCCTCGGTTCGATCTGA
647 CCCTCACACTGTCGCTGCTGTCACAACCCTCGGTCCGATCTGA
* * * *
10408598 TCTTAGACTAGGAATGAACTTCGTATGCTTAGACATTGAATGAACTCCATTTGCCTAAGCCAACC
1 TCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
10408663 CACGAAACGAGCGTGCGGGCGTTCAGTCGATCAGAGAGGTAGATGCGCAAGCCAGGGATC-AGCT
66 CACGAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGAGGAAGATGCGCAAGCCAGGGATCGA-CC
* * *
10408727 CGGTCCCCCCCT-CCGTGCTGTCGATCCTGCTGCTGGTCCTGCTG-CCCTAACCCTCGATCCAAT
130 CGAT-CCCCCCTGCC-TGCTGTCGATCCTGCTACTGGTCCTGCTGTACC-AACCCTCGATCCAAT
* * *
10408790 CCGATCTTATACTAGGAAAGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
192 CCGATCTTAGAATAGGAAAGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
* * * *
10408855 AACCCACGAAATGAACGTACGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGACC
257 AACCCACGAAACGAACGTACGGGCGCTCAGCCGATCGGAAAGGCAGAATGCGCAAGCCAGGAACC
* * * *
10408920 GGTCC-GGTCCC-CCCACATGCTGTCAATCCTGCTGCTGCAACCTTTGGTCTGATTTGATCTTAG
322 GG-CCTGATCCCTCCCACATGCTGTCAATCCGGCTGCTGCAACCCTTGGTCTGATTTGATCTTAA
* * * * * * *
10408983 ACTGGGAATGAATTTCGTATGCCTAAGTTAACCCATGAAATGAGCGTGTGGGCGCTGAGCCAGCC
386 ACTGGGAATCAACTCCGTATGCCTAAGCTAACCCACGAAATGAGCGTGCGGGCGCTCAGCCAGCC
* * * * *
10409048 GGAGAGGCATAATGCGTAAGCCGAGGATCGGCCCGATCCCCCTCTACGTGCTATCAGTC-CTACT
451 GAAGAGACAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCCTCTACGTGCTATCAGTCTC-ACT
* * *
10409112 GCCACAACCCTCGGTTCGA-CTCGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAATCA
515 GCCACAACCCTC-GATCCATCTCGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCA
* *
10409176 ACGAAACGGGCGTGCGGGGGCTCAGCCGGCCGGAGAGGCAGAATGCATAAATCAGGGATCGACCC
579 ACGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCATAAACCAGGGATCGACCC
* *
10409241 GGTCCCTCTACATACTGTCGATCCTGCTGTCACAACCCTTGGTCCGGTCTGA
644 GGTCCCTC-AC--ACTGTCG---CTGCTGTCACAACCCTCGGTCCGATCTGA
* * *
10409293 TCTTAGACTAGAAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAAC
1 TCTTAGACTAGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAC
* **
10409357 CCACGAAACAAGCGTGCGAACGCTCAGTCGACCAGAGAGGCAAGATGCGCAAG
65 CCACGAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGAGG-AAGATGCGCAAG
10409410 TCGGAGATCG
Statistics
Matches: 683, Mismatches: 106, Indels: 35
0.83 0.13 0.04
Matches are distributed among these distances:
683 2 0.00
684 288 0.42
685 255 0.37
686 6 0.01
687 1 0.00
690 3 0.00
691 2 0.00
694 1 0.00
695 114 0.17
696 11 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (689 bp):
TCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CACGAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGAGGAAGATGCGCAAGCCAGGGATCGACCC
GATCCCCCCTGCCTGCTGTCGATCCTGCTACTGGTCCTGCTGTACCAACCCTCGATCCAATCCGA
TCTTAGAATAGGAAAGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CACGAAACGAACGTACGGGCGCTCAGCCGATCGGAAAGGCAGAATGCGCAAGCCAGGAACCGGCC
TGATCCCTCCCACATGCTGTCAATCCGGCTGCTGCAACCCTTGGTCTGATTTGATCTTAAACTGG
GAATCAACTCCGTATGCCTAAGCTAACCCACGAAATGAGCGTGCGGGCGCTCAGCCAGCCGAAGA
GACAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCCTCTACGTGCTATCAGTCTCACTGCCACA
ACCCTCGATCCATCTCGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAAC
GGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCATAAACCAGGGATCGACCCGGTCCCT
CACACTGTCGCTGCTGTCACAACCCTCGGTCCGATCTGA
Found at i:10409320 original size:157 final size:155
Alignment explanation
Indices: 10408821--10409320 Score: 441
Period size: 157 Copynumber: 3.2 Consensus size: 155
10408811 ACTCTGTATG
* *
10408821 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACGTACGGGCGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
** * * * * * * *
10408885 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGACCGGTCCGGTCCCCCCACATGCTGTCAATCCT
65 CCGGCCGGAGAGGCAGAATGCGTAAACCAGGGATCGGCCCGGTCCCTCTACATGCTGTC-ATCCT
* * * * *
10408950 GCTGCTGCAACCTTTGGTCTGATTTGAT
129 GCTGC-ACAACCCTTGGTCCGGTCTGAT
* * * ** * * *
10408978 CTTAGACTGGGAATGAATTTCGTATGCCTAAGTTAACCCATGAAATGAGCGTGTGGGCGCTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * * *
10409043 CAGCCGGAGAGGCATAATGCGTAAGCC-GAGGATCGGCCCGATCCCCCTCTACGTGCTATCAGTC
66 CGGCCGGAGAGGCAGAATGCGTAAACCAG-GGATCGGCCCGGT--CCCTCTACATGCTGTCA-TC
* * * * **
10409107 CTACTGCCACAACCCTCGGTTC-GACTCGGG
127 CTGCTG-CACAACCCTTGGTCCGGTCT-GAT
* * * * * *
10409137 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAATCAACGAAACGGGCGTGCGGGGGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * *
10409201 CCGGCCGGAGAGGCAGAATGCATAAATCAGGGATCGACCCGGTCCCTCTACATACTGTCGATCCT
65 CCGGCCGGAGAGGCAGAATGCGTAAACCAGGGATCGGCCCGGTCCCTCTACATGCTGTC-ATCCT
10409266 GCTGTCACAACCCTTGGTCCGGTCTGAT
129 GCTG-CACAACCCTTGGTCCGGTCTGAT
*
10409294 CTTAGACTAGAAATGAACTCCGTATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
10409321 TTAGACTGGG
Statistics
Matches: 265, Mismatches: 66, Indels: 24
0.75 0.19 0.07
Matches are distributed among these distances:
156 1 0.00
157 143 0.54
158 7 0.03
159 112 0.42
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (155 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCGTAAACCAGGGATCGGCCCGGTCCCTCTACATGCTGTCATCCTGC
TGCACAACCCTTGGTCCGGTCTGAT
Found at i:10409323 original size:26 final size:26
Alignment explanation
Indices: 10409294--10409346 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10409284 CCGGTCTGAT
10409294 CTTAGACTAGAAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
* **
10409320 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
10409346 C
1 C
10409347 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCGTATG
Found at i:10410055 original size:26 final size:26
Alignment explanation
Indices: 10410017--10410067 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
10410007 GGCTCAAACT
*
10410017 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10410043 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
10410068 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10410470 original size:159 final size:159
Alignment explanation
Indices: 10410042--10410542 Score: 423
Period size: 158 Copynumber: 3.2 Consensus size: 159
10410032 AACTTCGTAT
* * *
10410042 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCATACGGGCACTCTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTC-A
* * * * * * *
10410107 -TC-GATCGGAGAGG-AAGAATGCTCAAGTCGGGGATCGGCCCGATCCCTC-CTGTGTGCTGTCG
65 GTCGGCT-GGAGAGGCAA-AATGCACAAGTCGAGGATCAGCCAGATCCCCCTCTGCGTGCTGTCG
** *
10410168 ATCCTGCTACTGCAACCCTCAGTCCAGTCTGA
128 ATCCTGCTACCACAACCCTCAGTCCAGGCTGA
* * * * * * *
10410200 TCTTAGAC-TAGGAATGAACTCAGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGAGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCA
* * * * * *
10410264 GCCGGCTGGAGAGGCATAATGCGCAATTCAAGGATCGACCCAG-TCCCCCTCTGCGTGCTG-CAG
65 GTCGGCTGGAGAGGCAAAATGCACAAGTCGAGGATC-AGCCAGATCCCCCTCTGCGTGCTGTC-G
* * ** *
10410327 GT-CTCGCTGCCACAACCCTTGGTCC-GGCTAGG
128 ATCCT-GCTACCACAACCCTCAGTCCAGGCT-GA
* * * *
10410359 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAG
* * * **
10410424 TCGGCTGGAGAGGCAAAATGCACAAGTCGAGGATCAGCCTGATCCCCCT-TCCATGCTACCGATC
66 TCGGCTGGAGAGGCAAAATGCACAAGTCGAGGATCAGCCAGATCCCCCTCTGCGTGCTGTCGATC
* * *
10410488 CTGCTGCCGCAACCCTCAGT-CTGGTCTGA
131 CTGCTACCACAACCCTCAGTCCAGG-CTGA
* *
10410517 TCTTAGAC-TGTGAATAAACTCCGTAT
1 GCTTAGACATG-GAATGAACTCCGTAT
10410543 CCTTAGACTG
Statistics
Matches: 269, Mismatches: 58, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
157 5 0.02
158 135 0.50
159 128 0.48
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.21
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAG
TCGGCTGGAGAGGCAAAATGCACAAGTCGAGGATCAGCCAGATCCCCCTCTGCGTGCTGTCGATC
CTGCTACCACAACCCTCAGTCCAGGCTGA
Found at i:10410562 original size:26 final size:26
Alignment explanation
Indices: 10410518--10410568 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
10410508 CTGGTCTGAT
*
10410518 CTTAGACTGTGAATAAACTCCGTATC
1 CTTAGACTGGGAATAAACTCCGTATC
* *
10410544 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATAAACTCCGTAT
10410569 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATC
Done.