Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 56 of 402
Found at i:10410744 original size:26 final size:26
Alignment explanation
Indices: 10410715--10410770 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
10410705 CCAGTCTGAT
10410715 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
10410741 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
10410767 CTTA
1 CTTA
10410771 AGCCAACCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:10411819 original size:26 final size:26
Alignment explanation
Indices: 10411790--10411840 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
10411780 CCGGTCTGAT
10411790 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
10411816 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
10411841 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10412096 original size:355 final size:355
Alignment explanation
Indices: 10411434--10412096 Score: 803
Period size: 355 Copynumber: 1.9 Consensus size: 355
10411424 TGGCTCAAAC
* *
10411434 TCTTAGACTAGGAATGAACTCTATATGCTTAGACATAAAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTAGGAATGAACTCCATATGCTTAGACATAAAATGAACTCCGTATACCTAAGCCAACC
** * ** * * * * *
10411499 CACGAAACGAGTGTGCGGGTGCTTTATCGGTTGGAGAGGCAGAATGCGCAAGCCAGGGATCGACT
66 CACGAAACGAGCATACGGGCACTCTATCGATCGGAGAGGAAGAATGCGCAAGCCAGGGATCGACC
* * *
10411564 TGGTCCCTCTCTGTGTGCTATCGATCCAGCTACCACAACCCTCGGTCCGACTGAGGCTTAGACAT
131 CGATCCCTCTCTGTGTGCTATCGATCCAGCTACCACAACCCTCAGTCCGACTGAGGCTTAGACAT
* * * ** * *
10411629 CGAATGAACTCTGTATGATTAAGACAACCCACGAAACGAGCGTGCGGGGGCTCAGTCGATCGGAG
196 CGAATGAACTCAGTATGACTAAGACAACCCACGAAACGAGCGTGCGAGCACTCAGCCGACCGGAG
* * * *
10411694 AGGTAGAATGCGCAAGCTGAGGATCGGCCTGGTCCCCCTTACGTGCTGTCGATCCTACAGCTGGT
261 AGGCAGAATGCGCAAGCTAAGGATCGACCCGGTCCCCCTTACGTGCTGTCGATCCTACAGCTGGT
10411759 CCTGCTATCGCAACCCTCGGTCCGGTCTGA
326 CCTGCTATCGCAACCCTCGGTCCGGTCTGA
* * **
10411789 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACC
1 TCTTAGACTAGGAATGAACTCCATATGCTTAGACATAAAATGAACTCCGTATACCTAAGCCAACC
* * * *
10411854 CACGAAACGAGCATACGGGCACTCTATCGATCGGAGAGGAAGAATGCTCAAGTCGGGGATCGGCC
66 CACGAAACGAGCATACGGGCACTCTATCGATCGGAGAGGAAGAATGCGCAAGCCAGGGATCGACC
* * ** * *
10411919 CGATCCCTC-CTGTGTGCTGTCGATCCTGCTACTGCAACCCTCAGTCCAGTCTGA-TCTTAGAC-
131 CGATCCCTCTCTGTGTGCTATCGATCCAGCTACCACAACCCTCAGTCC-GACTGAGGCTTAGACA
* * * * * * * *
10411981 TAGGAATGAACTCAGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGAGCACTGAGCCGGCCGG
195 T-CGAATGAACTCAGTATGACTAAGACAACCCACGAAACGAGCGTGCGAGCACTCAGCCGACCGG
* * *
10412046 AGAGGCATAATGCGCAA-TTCAAGGATCGACCCGGTCCCCCTCTGCGTGCTG
259 AGAGGCAGAATGCGCAAGCT-AAGGATCGACCCGGTCCCCCT-TACGTGCTG
10412097 CAGGTCTCGC
Statistics
Matches: 253, Mismatches: 51, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
353 2 0.01
354 121 0.48
355 130 0.51
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (355 bp):
TCTTAGACTAGGAATGAACTCCATATGCTTAGACATAAAATGAACTCCGTATACCTAAGCCAACC
CACGAAACGAGCATACGGGCACTCTATCGATCGGAGAGGAAGAATGCGCAAGCCAGGGATCGACC
CGATCCCTCTCTGTGTGCTATCGATCCAGCTACCACAACCCTCAGTCCGACTGAGGCTTAGACAT
CGAATGAACTCAGTATGACTAAGACAACCCACGAAACGAGCGTGCGAGCACTCAGCCGACCGGAG
AGGCAGAATGCGCAAGCTAAGGATCGACCCGGTCCCCCTTACGTGCTGTCGATCCTACAGCTGGT
CCTGCTATCGCAACCCTCGGTCCGGTCTGA
Found at i:10412243 original size:159 final size:158
Alignment explanation
Indices: 10411815--10412315 Score: 430
Period size: 158 Copynumber: 3.2 Consensus size: 158
10411805 AACTCCGTAT
* * *
10411815 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCATACGGGCACTCTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTC-A
* * * * *
10411880 -TC-GATCGGAGAGG-AAGAATGCTCAAGTCGGGGATCGGCCCGATCCCTC-CTGTGTGCTGTCG
65 GTCGGCT-GGAGAGGCAA-AATGCACAAGTCGAGGATC-GCCCGATCCCCCTCTGCGTGCTGTCG
** *
10411941 ATCCTGCTACTGCAACCCTCAGTCCAGTCTGA
127 ATCCTGCTACCACAACCCTCAGTCCAGGCTGA
* * * * * * *
10411973 TCTTAGAC-TAGGAATGAACTCAGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGAGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCA
* * * * * * * *
10412037 GCCGGCCGGAGAGGCATAATGCGCAATTCAAGGATCGACCCGGTCCCCCTCTGCGTGCTG-CAGG
65 GTCGGCTGGAGAGGCAAAATGCACAAGTCGAGGATCG-CCCGATCCCCCTCTGCGTGCTGTC-GA
* * *
10412101 T-CTCGCTGCCACAACCCTCGGTCC-GGCTAGG
128 TCCT-GCTACCACAACCCTCAGTCCAGGCT-GA
* * * *
10412132 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAG
* * * **
10412197 TCGGCTGGAGAGGCAAAATGCACAAGTCGAGGATCAGCCTGATCCCCCT-TCCATGCTACCGATC
66 TCGGCTGGAGAGGCAAAATGCACAAGTCGAGGATC-GCCCGATCCCCCTCTGCGTGCTGTCGATC
* * *
10412261 CTGCTGCCGCAACCCTCAGT-CTGGTCTGA
130 CTGCTACCACAACCCTCAGTCCAGG-CTGA
* *
10412290 TCTTAGAC-TGTGAATAAACTCCGTAT
1 GCTTAGACATG-GAATGAACTCCGTAT
10412316 CCTTAGACTG
Statistics
Matches: 271, Mismatches: 56, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
157 6 0.02
158 136 0.50
159 127 0.47
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAG
TCGGCTGGAGAGGCAAAATGCACAAGTCGAGGATCGCCCGATCCCCCTCTGCGTGCTGTCGATCC
TGCTACCACAACCCTCAGTCCAGGCTGA
Found at i:10412335 original size:26 final size:26
Alignment explanation
Indices: 10412291--10412341 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
10412281 CTGGTCTGAT
*
10412291 CTTAGACTGTGAATAAACTCCGTATC
1 CTTAGACTGGGAATAAACTCCGTATC
* *
10412317 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATAAACTCCGTAT
10412342 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATC
Found at i:10412399 original size:343 final size:348
Alignment explanation
Indices: 10411974--10412715 Score: 763
Period size: 345 Copynumber: 2.1 Consensus size: 348
10411964 CCAGTCTGAT
* * *
10411974 CTTAGACTAGGAATGAACTCAGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGAGCACTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGAGCACTCAGC
* * * *
10412039 CGGCCGGAGAGGCATAATGCGCAATTCAAGGATCGACCCGGTCCCCCTCTGCG-T-GC-TG-CAG
65 CGACCGGAGAGGCATAATGCGCAAGTCAAGGATCGA-CCGGACCCCCTCT-CGATCCCATGCCA-
* * *
10412100 GT-CTCGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
127 GTCCT-GCTACCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCATATGCCTAA
* * * * * *
10412164 GCCAACCCACGAAATGGGCGTGCGGGCGCTCAGTCGG-CTGGAGAGGCAAAATGCACAAGTCGAG
191 GCCAACCCACGAAACGAGCGTACAGGCGATCAGTCGGTC-GGAGAGGCAAAATGCACAAGCCGAG
* * **
10412228 GATCAGCCT-GATCCCC-CT-T-CC-A-TGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTC
255 GATC-GACTCGATCCCCTCTCTACCAACTGCTACCGATCCTGCTGCCACAACCCTCAGTCCAGTC
*
10412287 TGATCTTAGACTGTGAATAAACTCCGTATC
319 TGATCTTAGACTGGGAATAAACTCCGTATC
* * *
10412317 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTACGTA-CGCTCAG
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACG-AGCACTCAG
* ** * * * * ** *** *
10412381 TCGATGGGAGATGCATAATGCGTAAGTCAGGGATCTACTTGACGTGCTGTCGATCCCATTGCCAG
64 CCGACCGGAGAGGCATAATGCGCAAGTCAAGGATCGACCGGACCCCCTCTCGATCCCA-TGCCAG
* *
10412446 TCCTGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTTCATATGCCTAAGC
128 TCCTGCTACCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGC
* * * * *
10412511 CAACTCACGAAACGAGCGTACAGGCGATCAGTCGGTCGGAGAGGCAGATTGCCCAAGCCGGGGAT
193 CAACCCACGAAACGAGCGTACAGGCGATCAGTCGGTCGGAGAGGCAAAATGCACAAGCCGAGGAT
* * * *
10412576 CGACTCGGTCCCCTTCTGCTACCAATCCTGCTACTGGTCCTGCTGCCACAACCCTCGGTCCAGTC
258 CGACTCGATCCCC-TCT-CTACCAA--CTGCTACCGATCCTGCTGCCACAACCCTCAGTCCAGTC
* * * *
10412641 TGATCTTATACTGGGAATGAACTTCGTATG
319 TGATCTTAGACTGGGAATAAACTCCGTATC
* * *
10412671 CTTAGACATTGAATGAACTCCGTATGCATAAGCCAACCCATGAAA
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
10412716 CGATCCTACG
Statistics
Matches: 323, Mismatches: 57, Indels: 27
0.79 0.14 0.07
Matches are distributed among these distances:
341 2 0.01
342 7 0.02
343 84 0.26
344 4 0.01
345 119 0.37
346 5 0.02
347 2 0.01
349 1 0.00
350 2 0.01
351 1 0.00
354 95 0.29
355 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.22
Consensus pattern (348 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGAGCACTCAGCC
GACCGGAGAGGCATAATGCGCAAGTCAAGGATCGACCGGACCCCCTCTCGATCCCATGCCAGTCC
TGCTACCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA
CCCACGAAACGAGCGTACAGGCGATCAGTCGGTCGGAGAGGCAAAATGCACAAGCCGAGGATCGA
CTCGATCCCCTCTCTACCAACTGCTACCGATCCTGCTGCCACAACCCTCAGTCCAGTCTGATCTT
AGACTGGGAATAAACTCCGTATC
Found at i:10413172 original size:26 final size:26
Alignment explanation
Indices: 10413143--10413196 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
10413133 GATCCGATCT
10413143 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
*
10413169 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
10413195 TA
1 TA
10413197 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:10413483 original size:170 final size:170
Alignment explanation
Indices: 10413179--10413490 Score: 376
Period size: 170 Copynumber: 1.8 Consensus size: 170
10413169 TAGACTGGGG
* **** * *
10413179 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGAGCTCAGCCGATCGAAAAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAAGAGCTCAGCCAACCGAAAAGG
* * * * * *
10413244 TATAATGTGCAAGTCGAGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCCCACTGTCGGTCT
66 CAGAATGTGCAAGTCGAGGATCAGCCCGATCCCCCTCTACGTGCTGCCAATCCCACTCTCGGTCT
*
10413309 GCTGCCATAACCCTCGGTCCGACAGGGGCTTAGACATGGA
131 GCTGCCACAACCCTCGGTCCGACAGGGGCTTAGACATGGA
* * * * *
10413349 ATGAACTCCGTATGTCTAAGCCAACCCATGAAACGAGCGTACAAGCGCTCAGTCAACCGAAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAAGAGCTCAGCCAACCGAAAAGG
* * * **
10413414 CAGAATGTGCAAGTCGAGGATCGGTCTGATCCCCCT-TACGTGCTGCCAATCCTGCTACT-GGTC
66 CAGAATGTGCAAGTCGAGGATCAGCCCGATCCCCCTCTACGTGCTGCCAATCCCACT-CTCGGT-
10413477 CTGCTGCCACAACC
129 CTGCTGCCACAACC
10413491 GTTTGTCCGG
Statistics
Matches: 116, Mismatches: 24, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
169 19 0.16
170 97 0.84
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (170 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAAGAGCTCAGCCAACCGAAAAGG
CAGAATGTGCAAGTCGAGGATCAGCCCGATCCCCCTCTACGTGCTGCCAATCCCACTCTCGGTCT
GCTGCCACAACCCTCGGTCCGACAGGGGCTTAGACATGGA
Found at i:10414190 original size:26 final size:26
Alignment explanation
Indices: 10414152--10414204 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10414142 GGCTCAAACT
**
10414152 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
10414178 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
10414204 C
1 C
10414205 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:10414899 original size:26 final size:26
Alignment explanation
Indices: 10414863--10414918 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
10414853 CCGGTCCAAT
* *
10414863 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
10414889 CTTAGACTGGGGATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
10414915 CTTA
1 CTTA
10414919 AGTTAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:10415482 original size:16 final size:15
Alignment explanation
Indices: 10415448--10415478 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
10415438 ATGTGCCAAA
10415448 CAATCGCCGGAACCC
1 CAATCGCCGGAACCC
10415463 CAATCGCCGGAACCC
1 CAATCGCCGGAACCC
10415478 C
1 C
10415479 CAATTGCCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.48, G:0.19, T:0.06
Consensus pattern (15 bp):
CAATCGCCGGAACCC
Found at i:10416024 original size:26 final size:26
Alignment explanation
Indices: 10415978--10416030 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10415968 CTGATCTGAT
10415978 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
10416004 CTTAGACAT-GGAGTGACCTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10416030 C
1 C
10416031 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10416206 original size:171 final size:172
Alignment explanation
Indices: 10416003--10416373 Score: 455
Period size: 172 Copynumber: 2.2 Consensus size: 172
10415993 AACTCCGTAT
* * *
10416003 GCTTAGACATGGAGTGACCTCCGTATGCCTAAGTCAACCCAC-AAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAACGAGCGTGCGGGCGCTCA
* * * *
10416067 ACCGATCGGAGAGGCAGAATGCGCAAGCCAAGAATCGGCCCAGTCCCC-CTCTGCGTGCTGCCGA
66 ACCGATCGGAGAGGCAAAATACGCAAGCCAAGAATCGACCCAGTCCCCTC-CTGCGTGCTACCGA
* * *
10416131 TCCCGCTGCCA-GTCCTGCTGCCACAACCCTCGGTCCGA-CTGGG
130 TCCCGCT-ACAGGTCCTGCTGCCACAACCCTCGATCCGATCT-GA
* *
10416174 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAAATGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAACGAGCGTGCGGGCGCTCA
* * * ** * * *
10416239 GCTGATCGGAGAGGTAAAATACGCAAGCCGGGGATCGACCCAGTCCGCTCCTGCGTGCTATCGAT
66 ACCGATCGGAGAGGCAAAATACGCAAGCCAAGAATCGACCCAGTCCCCTCCTGCGTGCTACCGAT
* * *
10416304 CCTGCTACAGGTCCTGCTGTCATAACCCTCGATCCGATCTGA
131 CCCGCTACAGGTCCTGCTGCCACAACCCTCGATCCGATCTGA
*
10416346 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
10416374 TTAGACATGG
Statistics
Matches: 170, Mismatches: 25, Indels: 9
0.83 0.12 0.04
Matches are distributed among these distances:
171 41 0.24
172 126 0.74
173 3 0.02
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.19
Consensus pattern (172 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAACGAGCGTGCGGGCGCTCA
ACCGATCGGAGAGGCAAAATACGCAAGCCAAGAATCGACCCAGTCCCCTCCTGCGTGCTACCGAT
CCCGCTACAGGTCCTGCTGCCACAACCCTCGATCCGATCTGA
Found at i:10416376 original size:26 final size:26
Alignment explanation
Indices: 10416347--10416398 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10416337 CCGATCTGAT
10416347 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
10416373 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10416399 TCGAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10416727 original size:159 final size:160
Alignment explanation
Indices: 10416372--10417092 Score: 590
Period size: 159 Copynumber: 4.5 Consensus size: 160
10416362 AACTCCGTAT
* * * * * *
10416372 GCTTAGACATGGAATGAACTTCGTATGTCGAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
* * * * **
10416437 CTGGCC-GAAGAGGCAGAATGCGCAAGCCGGGGA-CTGGCCCGGT-CCCCGCTGCGTGCTGTCGA
66 CCGACCAGAA-AGGCAGAATGCGCAAGCCGGGGATC-GGCCCGATCCCCCTCTGCGTGCTACCGA
* * *
10416499 TCAT-GCTATCGCAACCTTC-AGTCCGG-TTCGA
129 TC-TCGCTACCACAACCCTCGA-TCCGGATTCGA
* * * * *
10416530 TCTTAGAC-TGGGAATGAAATCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCA
* * * ** *
10416594 GCCAACCAGAAAGGCATAATGCACAAGCCGGGGATCAACCCGATCCCCCTCTGCGTGCTACCGGT
65 GCCGACCAGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGAT
* * *
10416659 CTCGCTGCCACAACCCTCGATCCGGCTT-GG
130 CTCGCTACCACAACCCTCGATCCGGATTCGA
* * *
10416689 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGATCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
* * * * * **
10416754 CCG-CCAAGAGAGGTAGAATGCGCAAGCCGAGGACCGGCCCGGTCCCCC-CTGCGTGCTGTCGAT
66 CCGACC-AGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGAT
* * *
10416817 C-CTGCTACCGCAACCCTCGGTCC-AATTCGA
130 CTC-GCTACCACAACCCTCGATCCGGATTCGA
* * * * * * * * *
10416847 TCTTAGAC-TGGGAATGAACTCTGTCTGCCTAAGTCAACCCATGAAACAAGCAT-TCGGGCACTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGT-GGGCGCTC
* * * * * * * * *
10416910 AGCCGATCGGAGAGGCATAATGCGCAAGCCGGAGATCGGCCCAATCCCCCTCTGAGTGTTACCGG
64 AGCCGACCAGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGA
* * * * * *
10416975 TCTCGCTGCCATAACCCTCGGT-CTGATTGGG
129 TCTCGCTACCACAACCCTCGATCCGGATTCGA
* * * *
10417006 GCTTAGGCATGGAATGAACTCCCTATCCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
** * *
10417071 CCGGTCAGAGAGTCAGAATGCG
66 CCGACCAGAAAGGCAGAATGCG
10417093 TAGGTCGAGG
Statistics
Matches: 444, Mismatches: 100, Indels: 37
0.76 0.17 0.06
Matches are distributed among these distances:
157 5 0.01
158 207 0.47
159 225 0.51
160 7 0.02
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
CCGACCAGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGATC
TCGCTACCACAACCCTCGATCCGGATTCGA
Found at i:10416959 original size:317 final size:316
Alignment explanation
Indices: 10416372--10417141 Score: 927
Period size: 317 Copynumber: 2.4 Consensus size: 316
10416362 AACTCCGTAT
* * * * *
10416372 GCTTAGACATGGAATGAACTTCGTATGTCGAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
10416437 CTGGCC-GAAGAGGCAGAATGCGCAAGCCGGGGACTGGCCCGGTCCCCGCTGCGTGCTGTCGATC
66 C-CGCCAG-AGAGGTAGAATGCGCAAGCCGAGGACCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
* * * **
10416501 ATGCTATCGCAACCTTCAGTCCGGTTCGATCTTAGACTGGGAATGAAATCCGTATGCCTAAGTCA
129 CTGCTACCGCAACCCTCAGTCCAATTCGATCTTAGACTGGGAATGAAATCCGTATGCCTAAGTCA
** * * *
10416566 ACCCACGAAATGAGCGTGTGGGCGCTAAGCCAACCAGAAAGGCATAATGCACAAGCCGGGGATCA
194 ACCCACGAAACAAGCATGTGGGCACTAAGCCAACCAGAAAGGCATAATGCACAAGCCGGAGATCA
* * *
10416631 ACCCGATCCCCCTCTGCGTGCTACCGGTCTCGCTGCCACAACCCTCGATCCGGCTT-GG
259 ACCCAATCCCCCTCTGAGTGCTACCGGTCTCGCTGCCACAACCCTCGAT-CGGATTGGG
* *
10416689 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGATCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
10416754 CCGCCAAGAGAGGTAGAATGCGCAAGCCGAGGACCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGCC-AGAGAGGTAGAATGCGCAAGCCGAGGACCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * * *
10416819 TGCTACCGCAACCCTCGGTCCAATTCGATCTTAGACTGGGAATGAACTCTGTCTGCCTAAGTCAA
130 TGCTACCGCAACCCTCAGTCCAATTCGATCTTAGACTGGGAATGAAATCCGTATGCCTAAGTCAA
* * * * * * * *
10416884 CCCATGAAACAAGCAT-TCGGGCACTGAGCCGATCGGAGAGGCATAATGCGCAAGCCGGAGATCG
195 CCCACGAAACAAGCATGT-GGGCACTAAGCCAACCAGAAAGGCATAATGCACAAGCCGGAGATCA
* * * * *
10416948 GCCCAATCCCCCTCTGAGTGTTACCGGTCTCGCTGCCATAACCCTCGGTCTGATTGGG
259 ACCCAATCCCCCTCTGAGTGCTACCGGTCTCGCTGCCACAACCCTCGATCGGATTGGG
* * * * *
10417006 GCTTAGGCATGGAATGAACTCCCTATCCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * ** * *
10417071 CCGGTCAGAGA-GTCAGAATGCGTAGGTCGAGGATCGACCCAATCCCCCATTGCATGCTGTCGAT
66 CC-GCCAGAGAGGT-AGAATGCGCAAGCCGAGGACCGGCCCGGTCCCCC-CTGCGTGCTGTCGAT
10417135 CCTGCTA
128 CCTGCTA
10417142 TTGGTCCTAC
Statistics
Matches: 387, Mismatches: 59, Indels: 13
0.84 0.13 0.03
Matches are distributed among these distances:
316 10 0.03
317 354 0.91
318 23 0.06
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGCCAGAGAGGTAGAATGCGCAAGCCGAGGACCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTACCGCAACCCTCAGTCCAATTCGATCTTAGACTGGGAATGAAATCCGTATGCCTAAGTCAAC
CCACGAAACAAGCATGTGGGCACTAAGCCAACCAGAAAGGCATAATGCACAAGCCGGAGATCAAC
CCAATCCCCCTCTGAGTGCTACCGGTCTCGCTGCCACAACCCTCGATCGGATTGGG
Found at i:10417216 original size:26 final size:26
Alignment explanation
Indices: 10417178--10417230 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10417168 CCAGTCCGAT
*
10417178 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10417204 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10417230 C
1 C
10417231 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10417698 original size:158 final size:156
Alignment explanation
Indices: 10417204--10417705 Score: 481
Period size: 158 Copynumber: 3.2 Consensus size: 156
10417194 ACTTCGTATG
*
10417204 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGGGCGTGCGGGCGCTCAGC
* * * * ** *
10417269 TGGCCGGAGAGGCAGAATACGTAA-GCCGAGGACCGGCTCGGTCCCCCCTACATGCTGTCGACCC
66 CGGCCGGAGAGGCAGAATACGCAAGGCAG-GGATCGGCTCGGT-CCCCCTATGTGCTGTCGATCC
* *
10417333 TGCTGTCGTAACCCTCGATCCGGTCTGAT
129 TGCTGTCGCAACCCTCGAT-CTGTCTGAT
* * * *
10417362 CTTAGAC-TGGGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAA-GGAGCATTCGGGCGCTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGG-GCGTGCGGGCGCTCA
* ** * * * * * *
10417425 GTCGATCGGAGAGGCATAATACGCAAGCCAGGGATCAGTTCGGTCCCCCTCTGCGTGCTGTCGGT
64 GCCGGCCGGAGAGGCAGAATACGCAAGGCAGGGATCGGCTCGGTCCCCCTAT--GTGCTGTCGAT
* * ** * * **
10417490 CCCGTTACCACAACCCTCGATCTGACTAGGG
127 CCTGCTGTCGCAACCCTCGATCTGTCT-GAT
* * * * *
10417521 CTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGGGCGTGCGGGCGCTCAGC
* * * * * * *
10417586 CGGCCAGAGTGGCAGAATGCACAAGGCAGGGATCGGCTCGATCTCCCCTATGTACTGTCGATCTT
66 CGGCCGGAGAGGCAGAATACGCAAGGCAGGGATCGGCTCGGTC-CCCCTATGTGCTGTCGATCCT
*
10417651 GCTGTCGCAACCCTCGGTCTAGTCTGAT
130 GCTGTCGCAACCCTCGATCT-GTCTGAT
10417679 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
10417706 ATAGACTGGG
Statistics
Matches: 267, Mismatches: 66, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
157 9 0.03
158 138 0.52
159 111 0.42
160 9 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGGGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGCAGAATACGCAAGGCAGGGATCGGCTCGGTCCCCCTATGTGCTGTCGATCCTG
CTGTCGCAACCCTCGATCTGTCTGAT
Found at i:10417720 original size:26 final size:26
Alignment explanation
Indices: 10417681--10417731 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
10417671 AGTCTGATCT
10417681 TAGACTGGGAATGAACTCCGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
* *
10417707 TAGACTGGGGATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
10417732 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:10418513 original size:159 final size:157
Alignment explanation
Indices: 10418053--10418517 Score: 388
Period size: 159 Copynumber: 2.9 Consensus size: 157
10418043 AACTCCGTAT
* * *
10418053 GCTTAGACATGCAATGAACTCCA-TATGCCTAAGCCAACCCACGAAACGAGCAG-ACGAGCGCTC
1 GCTTAGACATGGAATGAACT-CATTATGCCTAAGCCAACCCACGAAACGAGC-GTACGGGCGCTA
* * * * *
10418116 AGTCGACCGGAGAGGCAAAATGCGTAAATCGGGGATC-GACCTGATCCCCCC-TACGTGTTGTCG
64 AGTCGACC-GAGAGGCAAAATGCGTAAGTC-GGAATCAG-CCCGATCCCCCCATGCGTGCTGTCG
*
10418179 ATCCTGCTACCGCAACCATCGATCTGATCCGA
126 ATCCTGCTACCGCAACCCTCGATCTGATCCGA
* * * ** * * *
10418211 TCTTAGAC-TGGGAATGAACT-TTGTATGCATAAATCAACGCACGAAACGAGCATGCGGGCGCTA
1 GCTTAGACAT-GGAATGAACTCAT-TATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTA
* * * * * * * **
10418274 AGTCGATCGAAGAGGCATAATGCATAAGCTGCGGATTGA-CCCG-GCCCCCTTATGCGTGCTACC
64 AGTCGACCG-AGAGGCAAAATGCGTAAG-T-CGGAATCAGCCCGATCCCCC-CATGCGTGCTGTC
* * * ** *
10418337 GATCCTGCTCCCACAACCCTCGATCTGGTTGGG
125 GATCCTGCTACCGCAACCCTCGATCTGATCCGA
* * *
10418370 GCTTAGACATGGAATGAACTCATTATGCCTAAGCCAACTCACGAAACGGGCGTACGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCATTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTAAG
* * *
10418435 TCGACCAGAGAGGCAGAATACGTAAGTCGAGAATCAGCCCGATCCCCCCATGCGTGGTGTCGATC
66 TCGACC-GAGAGGCAAAATGCGTAAGTCG-GAATCAGCCCGATCCCCCCATGCGTGCTGTCGATC
* * *
10418500 TTGCTGCTGCAACCCTCG
129 CTGCTACCGCAACCCTCG
10418518 GTCCATTTCA
Statistics
Matches: 234, Mismatches: 57, Indels: 31
0.73 0.18 0.10
Matches are distributed among these distances:
157 9 0.04
158 77 0.33
159 139 0.59
160 9 0.04
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCATTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTAAG
TCGACCGAGAGGCAAAATGCGTAAGTCGGAATCAGCCCGATCCCCCCATGCGTGCTGTCGATCCT
GCTACCGCAACCCTCGATCTGATCCGA
Found at i:10419053 original size:666 final size:662
Alignment explanation
Indices: 10418053--10419520 Score: 1742
Period size: 666 Copynumber: 2.2 Consensus size: 662
10418043 AACTCCGTAT
* * * * *
10418053 GCTTAGACATGCAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGC-AG-ACGAGCGCTC
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCA-G-GCGCTC
* * * *
10418116 AGTCGACCGGAGAGGCAAAATGCGTAAATCGGGGATC-GACCTGATCCCCCCTACGTGTTGTCGA
64 AGTCGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCAG-CCCGATCCCCCCTGCGTGTTGTCGA
* * * **
10418180 TCCTGCTACCGCAACCATCGATCTGATCCGATCTTAGACTGGGAATGAACTTTGTATGCATAAAT
128 TCCTACTGCCGCAACCATCGATCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAAT
* * * * *
10418245 CAACGCACGAAACGAGCATGCGGGCGCTAAGTCGATCGAAGAGGCATAATGCATAAGCTGCGGAT
193 CAACCCACGAAACGAGCATGCGGGCGCTAAGCCGACCGAAGAGGCATAATGCACAAGCCGCGGAT
* * * * * * * *
10418310 TGACCCGGCCCCCTTATGCGTGCTACCGATCCTGCTCCCACAACCCTCGATCTGGTTGGGGCTTA
258 AGACCCGACCCCCTTATACATGCTACAGATCCTGCTCCCACAACCCTCGATCTAGCTGGGACTTA
* * * *
10418375 GACATGGAATGAACTCATTATGCCTAAGCCAACTCACGAAACGGGCGTACGGGCGCTTAGTCGAC
323 GACATAGAATGAACTCATTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGAGCTCAGTCGAC
* ** * *
10418440 CAGAGAGGCAGAATACGTAAGTCGAGAATCAGCCCGATCCCCCCAT-GCGTGGTGTCGATCTTGC
388 CAGACAGGCAGAATACACAAGCCGAGAATCAGCCCGAT-CCCCC-TGGCATGGTGTCGATCTTGC
* * *
10418504 TGCTGCAACCCTCG-G-TCCAT-TTCA-ATTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATG
451 TACCGCAACCCTCGTGTTCCATCTT-AGACTGGGAATGAACTCCGTATGCTTAGACGT-GGGATG
* * * *
10418564 AACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAT
514 AACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAT
* * * * *
10418629 AATGCGTAAG-TCAAGGATCAGCCC-GATCCCCCTCTGCGTGCTGTCGATCCCGCTGCCGGTCCT
579 AATGCGCAAGCT-AAGGATCAGCCCAG-TCCCCCTCTGCGTACTGCCGATCCAGCTGCCAGTCCT
10418692 GCTACCACAACCCTCGATCCGA
642 GCTACCACAACCCTCGATCC-A
* * *
10418714 CTGGGGCTTAGACATGGAATGAACTTCGTAAGCCTAAGCCAACCCACAAAATGAGCGTGCAGGCA
1 -----GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCG
* *
10418779 CTCAGTCGATCGAAGAGGCAGAATGCGTAAGTCGGGGATCAGCCCGATCCCCCCTGCGTGTTGTC
61 CTCAGTCGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCAGCCCGATCCCCCCTGCGTGTTGTC
* * * *
10418844 GATCCTACTGCCGCAACCCTCGGTCTGATCTGATTTTAGACTAGGAATGAACTCCGTATGCATAA
126 GATCCTACTGCCGCAACCATCGATCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCATAA
* * * * * * * *
10418909 GTTAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGGCCGAAGAGGTATAATTCACAAGCCGGGG
191 ATCAACCCACGAAACGAGCATGCGGGCGCTAAGCCGACCGAAGAGGCATAATGCACAAGCCGCGG
* * * * ** *
10418974 ATCAG-CCTGATCCCCTTCTACATGCTGTCAG-TGTTGCTCCCACAACCCTCGGTCTAGCTGGGA
256 AT-AGACCCGACCCCCTTATACATGCT-ACAGATCCTGCTCCCACAACCCTCGATCTAGCTGGGA
* *
10419037 CTTAGACATAGAATGAACTCATTATGCCTAAGGCAACCCACGAAACGGGCGTGCGGGAGCTCAGT
319 CTTAGACATAGAATGAACTCATTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGAGCTCAGT
** * * * *
10419102 CGGTCGGACAGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCCTGGCATGGTGTTGATCTT
384 CGACCAGACAGGCAGAATACACAAGCCGAGAATCAGCCCGATCCCCCTGGCATGGTGTCGATCTT
* * *
10419167 GCTACCGTAACCCTCGATCTGTTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTATACGTGG
449 GCTACCGCAACCCTCG---TG-TTCCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACGTGG
* * *
10419232 GATGAACTCCGTATGCCTAAGTCAACACATGAAATGAGCGTGCGGGCGCTCAGCCGATCGTAGAG
510 GATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAG
** * *
10419297 GCATAATGCGCAAGCTGGGGATCAGCCCAGTCCCCTTCTGCGTACTGCCGATCCAGCTGCTAGTC
575 GCATAATGCGCAAGCTAAGGATCAGCCCAGTCCCCCTCTGCGTACTGCCGATCCAGCTGCCAGTC
*
10419362 CTGCTACCACAACCCTCGGTCCA
640 CTGCTACCACAACCCTCGATCCA
* *
10419385 GCTTAGACATGGAATGAAC-TCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTTC-GTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCA
** * * *
10419449 ACCGACCGGAGAGACAGAATACGTAAG-CTGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGAT
65 GTCGACCGGAGAGGCAGAATGCGTAAGTC-GGGGATCAGCCCGATCCCCCCTGCGTGTTGTCGAT
10419513 CCTACTGC
129 CCTACTGC
10419521 TGGTCCTATT
Statistics
Matches: 680, Mismatches: 103, Indels: 38
0.83 0.13 0.05
Matches are distributed among these distances:
664 1 0.00
665 35 0.05
666 466 0.69
667 6 0.01
668 1 0.00
669 1 0.00
671 6 0.01
672 161 0.24
673 3 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (662 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
TCGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCAGCCCGATCCCCCCTGCGTGTTGTCGATCC
TACTGCCGCAACCATCGATCTGATCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAATCAA
CCCACGAAACGAGCATGCGGGCGCTAAGCCGACCGAAGAGGCATAATGCACAAGCCGCGGATAGA
CCCGACCCCCTTATACATGCTACAGATCCTGCTCCCACAACCCTCGATCTAGCTGGGACTTAGAC
ATAGAATGAACTCATTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGAGCTCAGTCGACCAG
ACAGGCAGAATACACAAGCCGAGAATCAGCCCGATCCCCCTGGCATGGTGTCGATCTTGCTACCG
CAACCCTCGTGTTCCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACGTGGGATGAACTCCG
TATGCCTAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCATAATGCGC
AAGCTAAGGATCAGCCCAGTCCCCCTCTGCGTACTGCCGATCCAGCTGCCAGTCCTGCTACCACA
ACCCTCGATCCA
Found at i:10419594 original size:26 final size:26
Alignment explanation
Indices: 10419556--10419608 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10419546 CCGGTCTGAT
* *
10419556 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATAAACTCCGTATG
10419582 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
10419608 C
1 C
10419609 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:10419689 original size:361 final size:351
Alignment explanation
Indices: 10419172--10419933 Score: 868
Period size: 361 Copynumber: 2.1 Consensus size: 351
10419162 ATCTTGCTAC
* * * * *
10419172 CGTAACCCTCGATCTGTTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTATACGTGGGATGA
1 CGTAACCCTCGATC-GGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAA
* * * *
10419237 ACTCCGTATGCCTAAGTCAACACATGAAATGAGCGTGCGGGCGCTCAGCCGATCGTAGAGGCATA
65 ACTCCGTATGCCTAAGCCAACACATGAAATGAGCGTACGGGCGCTCAGCCGATCGGAGAGGCAGA
* * * *
10419302 ATGCGCAAGCTGGGGATCAGCCCAGTCCCCTTCTGCGTACTGCCGATCCAGCTGCTAGTCCTGCT
130 ATGCGCAAGCCGGGGATCAGCCCAGTCCCC-CCTGCGTACTACCGAT-C--CTGCT-G-CC-GCA
* * *
10419367 A-CCACAACCCTCGGTC-CAGCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGA
188 ACCCAC-ACTC-CGGGCTCAGCTTAGA-ATAGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
* ** * * *
10419429 AATGAGCGTGCGGGTGCTCAACCGACCGGAGAGACAGAATACGTAAGCTGGGGATCAGCCCGATC
250 AATGAGCGTGCGAGCACTCAACCGACCGGAGAGACAGAATACGCAAGC-CGAGATCAGCCCGAT-
* *
10419494 CCCCCTGCGTGCTGTCGATCCTACTGCTGGTCCTATTGT
313 CCCCCTACGTGCTGTCGATCCTACTGCTGGTCCTACTGT
*
10419533 CGTAACCCTCGATCCGG-TCTGATCTTAGACTGGGAATGAACTCCTTATGCTTAGACATGGAATA
1 CGTAACCCTCGAT-CGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATA
* * * *
10419597 AACTCCGTATGCCTAAGCCAACCCATGAAATGAGCTTACGGGCGCTCAGCCGATCGGAGCGGTAG
64 AACTCCGTATGCCTAAGCCAACACATGAAATGAGCGTACGGGCGCTCAGCCGATCGGAGAGGCAG
* * * * *
10419662 AATGCGTAAGCCGGGGA-CTGGCCCAGTCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAACCCT
129 AATGCGCAAGCCGGGGATC-AGCCCAGTCCCCCCTGCGTACTACCGATCCTGCTGCCGCAACCCA
* * * * **
10419726 CAGTCCGGGCTGATCTTAGAGTAGGAATGAACTCCGTATGCCTAATTCAACCCACGAAATGAGCG
193 CACTCCGGGCTCAGCTTAGAATAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCG
** ** * *
10419791 TGCGAGCACTCAACCGGTCGGAGAGGTAGAATGCGCAAGCCGAGATCGGCCCGATCCCCCTACGT
258 TGCGAGCACTCAACCGACCGGAGAGACAGAATACGCAAGCCGAGATCAGCCCGATCCCCCTACGT
* * * *
10419856 GCTGTCGATCTTGCTGTTGGTCCTGCTGT
323 GCTGTCGATCCTACTGCTGGTCCTACTGT
* *
10419885 CGTAACCCTCTATTCGGTTCGATCTTAGATTGGGAATGAACTCCGTATG
1 CGTAACCCTCGA-TCGGTTCGATCTTAGACTGGGAATGAACTCCGTATG
10419934 TCTAAGCCAA
Statistics
Matches: 340, Mismatches: 53, Indels: 25
0.81 0.13 0.06
Matches are distributed among these distances:
352 74 0.22
353 20 0.06
354 82 0.24
355 5 0.01
356 1 0.00
357 5 0.01
359 1 0.00
360 15 0.04
361 136 0.40
362 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.23
Consensus pattern (351 bp):
CGTAACCCTCGATCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAAA
CTCCGTATGCCTAAGCCAACACATGAAATGAGCGTACGGGCGCTCAGCCGATCGGAGAGGCAGAA
TGCGCAAGCCGGGGATCAGCCCAGTCCCCCCTGCGTACTACCGATCCTGCTGCCGCAACCCACAC
TCCGGGCTCAGCTTAGAATAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGC
GAGCACTCAACCGACCGGAGAGACAGAATACGCAAGCCGAGATCAGCCCGATCCCCCTACGTGCT
GTCGATCCTACTGCTGGTCCTACTGT
Found at i:10420422 original size:26 final size:26
Alignment explanation
Indices: 10420386--10420461 Score: 109
Period size: 26 Copynumber: 2.9 Consensus size: 26
10420376 GTCCAATCTT
*
10420386 AGACTGGGAATGAACTCCGTATGCTC
1 AGACTGGGAATGAACTTCGTATGCTC
* *
10420412 AGACTGGGAATGAACTTCATATGCTT
1 AGACTGGGAATGAACTTCGTATGCTC
10420438 AGACT-GGAGATGAACTTCGTATGC
1 AGACTGGGA-ATGAACTTCGTATGC
10420462 CTAGGTCAAC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
25 3 0.07
26 42 0.93
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTTCGTATGCTC
Found at i:10421523 original size:26 final size:26
Alignment explanation
Indices: 10421494--10421546 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10421484 CTGGTCCGAT
*
10421494 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
10421520 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10421546 C
1 C
10421547 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10423205 original size:26 final size:26
Alignment explanation
Indices: 10423153--10423205 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
10423143 GGCTCAAACT
* *
10423153 CTTAGACTGGGAAAGAATTTCGTATG
1 CTTAGACTGGGAAAGAATTCCGCATG
*
10423179 CTTAGACAT-GGAATGAATTCCGCATG
1 CTTAGAC-TGGGAAAGAATTCCGCATG
10423205 C
1 C
10423206 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAATTCCGCATG
Found at i:10423532 original size:26 final size:26
Alignment explanation
Indices: 10423496--10423548 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10423486 CCAATCTAAT
10423496 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10423522 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10423548 C
1 C
10423549 CTAACTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10424978 original size:26 final size:26
Alignment explanation
Indices: 10424940--10424990 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
10424930 GGCTCAAACT
*
10424940 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10424966 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
10424991 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10425324 original size:26 final size:26
Alignment explanation
Indices: 10425283--10425335 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10425273 CTGGTTCGAT
10425283 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10425309 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
10425335 C
1 C
10425336 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10425966 original size:26 final size:26
Alignment explanation
Indices: 10425937--10425989 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10425927 CCGGTCCAAT
* *
10425937 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGAGAATAAACTCCGTATG
*
10425963 CTTAGACTGAGGATAAACTCCGTATG
1 CTTAGACTGAGAATAAACTCCGTATG
10425989 C
1 C
10425990 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATAAACTCCGTATG
Found at i:10426698 original size:26 final size:26
Alignment explanation
Indices: 10426660--10426712 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10426650 GGCTCAAACT
10426660 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10426686 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10426712 C
1 C
10426713 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10427044 original size:26 final size:26
Alignment explanation
Indices: 10427003--10427055 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10426993 CTGGTCTGAT
10427003 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10427029 CTTAGACT-GGAGATGAACTCTGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
10427055 C
1 C
10427056 CTAGGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10427236 original size:26 final size:26
Alignment explanation
Indices: 10427198--10427249 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10427188 CTGGTCCAAT
10427198 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
10427224 CTTAGA-TATGGAATGAACTCCTTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
10427250 GCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:10427735 original size:26 final size:26
Alignment explanation
Indices: 10427699--10427751 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10427689 CTGGTCCAAT
* *
10427699 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCCTATG
*
10427725 CTTAGACTGGGGATAAACTTCCTATG
1 CTTAGACTGGGAATAAACTTCCTATG
10427751 C
1 C
10427752 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCCTATG
Found at i:10428819 original size:157 final size:158
Alignment explanation
Indices: 10428448--10428895 Score: 460
Period size: 159 Copynumber: 2.8 Consensus size: 158
10428438 AACTTCATAT
* * *
10428448 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCTAACCCATAAAACGAGCGTGCGAGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCATAAAACGAGCGTGCGGGCGCTCAG
* * * * ** * * * *
10428513 TCGGCCGGAGAGGCAGACTGCGCAAGCCAGGGATCAGCTCGGTCCCCCTCTGCATGCTGTCGGTC
65 CCGACCGGAGAGACAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGCGTGCTATCGATC
* * **
10428578 CCATTGCCATAACCCTCGATGTAGCTGGG
130 CCATTGCCACAACCCTCGATCTAGCTGAA
* * *
10428607 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCATAAAACGAGCGTGCGGGCGCTCAG
*
10428672 CCGACCGGAGAGACAGAATGCGTAAGCTGGGGATCAGCCCGGTCCCCC-CTGCGTGCTATCGATC
65 CCGACCGGAGAGACAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGCGTGCTATCGATC
* *
10428736 CTATTGCCACAACCCTCTG-TCTGGTCT-AA
130 CCATTGCCACAACCCTC-GATCTAG-CTGAA
** * * * *
10428765 TTTTAGAC-TGGGATGAACTCCGTATGCCTAAGTCAACCCATTAAACGAGTGTGCGGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCATAAAACGAGCGTGCGGGCGCTCAG
* * * * *
10428829 CC-AGCCGAAGA-AGCATAATGCACAAG-TCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTATCG
65 CCGA-CCGGAGAGA-CAGAATGCGCAAGCT-GGGGATCAGCCCGGTCCCCCTCTGCGTGCTATCG
*
10428891 GTCCC
127 ATCCC
10428896 CCTCTACGTG
Statistics
Matches: 242, Mismatches: 40, Indels: 15
0.81 0.13 0.05
Matches are distributed among these distances:
156 3 0.01
157 85 0.35
158 53 0.22
159 100 0.41
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCATAAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGACAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGCGTGCTATCGATCC
CATTGCCACAACCCTCGATCTAGCTGAA
Found at i:10428894 original size:21 final size:20
Alignment explanation
Indices: 10428868--10428935 Score: 100
Period size: 21 Copynumber: 3.2 Consensus size: 20
10428858 AGGATCGGCC
*
10428868 CGGTCCCCCTCTGCGTGCTA
1 CGGTCCCCCTCTACGTGCTA
10428888 TCGGTCCCCCTCTACGTGCTA
1 -CGGTCCCCCTCTACGTGCTA
10428909 CTGGTCCCCCTCTACGTGCTA
1 C-GGTCCCCCTCTACGTGCTA
10428930 CCGGTC
1 -CGGTC
10428936 TCGCTGCCAT
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
20 1 0.02
21 42 0.95
22 1 0.02
ACGTcount: A:0.07, C:0.44, G:0.22, T:0.26
Consensus pattern (20 bp):
CGGTCCCCCTCTACGTGCTA
Found at i:10429422 original size:158 final size:158
Alignment explanation
Indices: 10428909--10429431 Score: 542
Period size: 158 Copynumber: 3.3 Consensus size: 158
10428899 CTACGTGCTA
* * * * * * *
10428909 CTGGTCCCCCTCTACGTGCTACCGGT-CTCGCTGCCATAACCCTCGGT-CTGACTGGGGCTCAGA
1 CTGGTCCCCC-CTGCGTGCTACCGATCCT-GCTGTCACAACCCTCGATCCGGACTGGGGCTTAGA
* **
10428972 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGT-CTGGGGCTCAACCGATCG
64 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGC-GGGGCTCAGCCGGCCG
* * *
10429036 GAGAGGCAGAATGCACAAGCCAAGGATCGAC
128 AAGAGGCAGAATGCGCAAGCCGAGGATCGAC
* * * * * **
10429067 CTGGTCCCCCCTGCATGCTACCGATCCTGTTGTCACAACCTTCGGTCCGGTCT-GATCTTAGAC-
1 CTGGTCCCCCCTGCGTGCTACCGATCCTGCTGTCACAACCCTCGATCCGGACTGGGGCTTAGACA
* * * * * * ** *
10429130 TGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCAGGTACTGAGCCGGCCGA
66 T-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGC-GGGGCTCAGCCGGCCGA
*
10429195 AGAGG-ATAATGCGCAAGCCGAGGATCGAC
129 AGAGGCAGAATGCGCAAGCCGAGGATCGAC
* * * *
10429224 CTGGTCCCCCTCTGCGTGCTGCCGGT-CTCGCTGCCACAACCCTCGATTC-GACTGGGGCTTAGA
1 CTGGTCCCCC-CTGCGTGCTACCGATCCT-GCTGTCACAACCCTCGATCCGGACTGGGGCTTAGA
* *
10429287 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGGAACGGGCGTGCGGGCGCTCAGCTGGCCG
64 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGG-GCTCAGCCGGCCG
* *
10429352 AAGAGGCAGAATGCGCAAGTCGGGGATCGA-
128 AAGAGGCAGAATGCGCAAGCCGAGGATCGAC
* *
10429382 CTCGGTCCCCCCTGCGTGCTACCAATCCTGCTGTCGCAACCCTCGATCCG
1 CT-GGTCCCCCCTGCGTGCTACCGATCCTGCTGTCACAACCCTCGATCCG
10429432 ATCCGATCTT
Statistics
Matches: 292, Mismatches: 60, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
156 1 0.00
157 108 0.37
158 152 0.52
159 31 0.11
ACGTcount: A:0.22, C:0.33, G:0.27, T:0.19
Consensus pattern (158 bp):
CTGGTCCCCCCTGCGTGCTACCGATCCTGCTGTCACAACCCTCGATCCGGACTGGGGCTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGGCTCAGCCGGCCGAAG
AGGCAGAATGCGCAAGCCGAGGATCGAC
Found at i:10430182 original size:26 final size:26
Alignment explanation
Indices: 10430146--10430198 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10430136 CGGATCTGAT
10430146 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
10430172 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10430198 C
1 C
10430199 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10430563 original size:26 final size:26
Alignment explanation
Indices: 10430525--10430577 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10430515 CCGGTCCGAT
10430525 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
10430551 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
10430577 C
1 C
10430578 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:10431047 original size:26 final size:26
Alignment explanation
Indices: 10431018--10431070 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10431008 TCGGTCTGAT
* *
10431018 CTTAGACTAGGAATGTACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
10431044 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
10431070 C
1 C
10431071 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:10432735 original size:26 final size:26
Alignment explanation
Indices: 10432697--10432749 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10432687 GGCTCAAAAT
*
10432697 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10432723 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10432749 C
1 C
10432750 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10433033 original size:21 final size:22
Alignment explanation
Indices: 10432987--10433033 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
10432977 ATTGGCTTGG
* *
10432987 TCCCCCTCTGCGTGCTACCGGG
1 TCCCCCTCTACGTGCTACCGGA
*
10433009 TCCCCCTCTACGTGCTATC-GA
1 TCCCCCTCTACGTGCTACCGGA
10433030 TCCC
1 TCCC
10433034 GCTGCCATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.09, C:0.47, G:0.19, T:0.26
Consensus pattern (22 bp):
TCCCCCTCTACGTGCTACCGGA
Found at i:10435259 original size:26 final size:26
Alignment explanation
Indices: 10435221--10435273 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10435211 GGCCCAAAAT
*
10435221 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
10435247 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
10435273 C
1 C
10435274 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:10435757 original size:26 final size:26
Alignment explanation
Indices: 10435721--10435773 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10435711 CCGATCCAAT
*
10435721 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
10435747 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10435773 C
1 C
10435774 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10436117 original size:26 final size:26
Alignment explanation
Indices: 10436088--10436140 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10436078 CCAGTCTGAT
*
10436088 CTTAGAC-TGGGAATGAACTCAGTATG
1 CTTAGACAT-GGAATAAACTCAGTATG
*
10436114 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCAGTATG
10436140 C
1 C
10436141 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCAGTATG
Found at i:10436618 original size:26 final size:26
Alignment explanation
Indices: 10436589--10436641 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10436579 CCGATTCGAT
10436589 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
** *
10436615 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
10436641 C
1 C
10436642 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:10437006 original size:26 final size:26
Alignment explanation
Indices: 10436968--10437020 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10436958 CCGGTCCGAT
10436968 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
10436994 CTTAGAC-ATGGAATTAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
10437020 C
1 C
10437021 CCAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:10437381 original size:881 final size:866
Alignment explanation
Indices: 10435219--10437559 Score: 2643
Period size: 881 Copynumber: 2.7 Consensus size: 866
10435209 ATGGCCCAAA
* * *
10435219 ATCTTAGACGGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAAC
* * *
10435284 CCA-CAGAATGAGCGTGCGGGCGCTCAGTCAGTCGAAGGGGCAGAATGCGCAAGCCGGGGATCGA
66 CCATGA-AATGAGCGTGCGGGCGCTCAGTCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA
* * * * *
10435348 CCCAGTCCCCCCCTGCGTGCTGTCAATCCTGCTATCGTAACCCTCGGTTCGGTCCGATCTTAGAC
130 CCCGGT-CCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGAC
** * * * *
10435413 TGCTAATGAACTTCGTATGCATAAGTCAACCCATGAAACAAGTGTGCGAGCGCTAAGCCGATCGA
194 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGAGCGCTAAGCCGATCGG
* ** * *
10435478 AGAGGCATAATGCACAAGCCAAGGATCGGTCGATCCCCCTCTGCGTGCTGCCGGTCCCACCGCCA
259 AGAGGCATAATGCACAAGCCGAGGATCGCCCGATCCCCCTCTGCATGCTGCCGATCCCACCGCCA
* * * * *
10435543 TAGCCTTCGGTCTGGCTGGGGTCAGACATGGAATGAACTCCCTATGGCTAAGCCAACCCACGAAA
324 CAGCCTTCGGTCCGGCTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* ** * * * * *
10435608 CGGGTGTGCGGGTGCTCAACTGGTCGGAA-AGGCAGAATGCGTAAGCCTGGGATCGACCCGATCC
389 CGGGCGTGCGGGCACTCAGCTGG-CCGAAGAGGCAGAATGCGTAAGTCGGGGATCGACCTGATCC
* * * * *
10435672 CCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGA
453 CCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGTTCCGATTCGATCTTAGACTGGGAATGA
* * * * *
10435737 ACTTCGTATGCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCG
518 ACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCATGCA
* * * *
10435802 GGCACTCAACCTGTCGGAGAGGCATAATGCACAAGCAGGGATCAGCTCGGTCCCCCTCTGCGCGC
583 GGCACTCAACCGGTCGGAGAGGCAAAATGCACAAGCAGGGATCAGCCCGATCCCCCTCTGCGCGC
* ** *
10435867 TGTCGATCCCGCTGTTGGTCCTACTACCACAACCCCCAGTCTGACTGTGGCTTAGACATGGAATG
648 TGTCAATCCCGCTGCCGGTCCTACTACCACAACCCCCAGTCCGACTGTGGCTTAGACATGGAATG
* ** * * * *
10435932 AACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGCACTCAACCAGTCGGAGAGGCAA
713 AACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCAGACACTCAACCAGCCGAAGAGCCAA
* * * * * *
10435997 AATGCACATGCCAGGGATCGGCTCGATCCCCCGCTACGTGCTGCAGATCCTGCTGCTGGTCCTGC
778 AATGCACAAGCCAAGGATCAGCTCGATCCCCCGCTACGTGCTACAGATCCTACTGCTGGTCCTAC
*
10436062 TACCGTAAACCTCAGTCCAGTCTG
843 TACCGTAAACCTCAGTCCAGTCCG
10436086 ATCTTAGACTGGGAATGAACT-CAGTATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAA
1 ATCTTAGACTGGGAATGAACTCCA-TATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAA
* * * * * *
10436150 CCCATGAAATGAGCGTGCGGGTGCCCAGTCAGCCAGAGAGGTAGAATGCGCAAGCCAGGGATCGA
65 CCCATGAAATGAGCGTGCGGGCGCTCAGTCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA
* * *
10436215 CCCGG-CCCCCCATGTGTGCTGTCGATCCTGCTACCGCAACCCGT-GATCCGATCCGATCTTAGA
130 CCCGGTCCCCCC-TGCGTGCTGTCGATCCTGCTACCGCAACCC-TCGGTCCGGTCCGATCTTAGA
* ** *
10436278 CTGGGAATGAACTCTGTATGCCTAAGTCATTCCATGAAACGAGTGTGCGAGCGCTAAGCCGACCG
193 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGAGCGCTAAGCCGATCG
* * * * * *
10436343 GAGAGGCGTAATGCGCAAGCCGAGGATCGGCCC-AGTCCCCTTCTGTGA-GCTGTC-AGTCCCGC
258 GAGAGGCATAATGCACAAGCCGAGGATC-GCCCGA-TCCCCCTCTG-CATGCTGCCGA-TCCCAC
* * *
10436405 TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
319 CGCCACAGCCTTCGGTCCGGCT-GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* * *
10436470 ACAAAATGGGCGTGCGGGCACTCCGCTGGCCGAAGAGGCAGAATGCGTAAGTCGGGGATCGACCT
383 ACGAAACGGGCGTGCGGGCACTCAGCTGGCCGAAGAGGCAGAATGCGTAAGTCGGGGATCGACCT
* * * * *
10436535 GGTCCCCCCTGCATGCTGCCAATCCTGCTACCGCAACCCTCGTTCCGATTCGATCTTAGACTGGA
448 GATCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGTTCCGATTCGATCTTAGACTGGG
* *
10436600 AATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATAAAATGAGC
513 AATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGC
** **
10436665 ATGCAGGTGCTCAGTCGGTCGGAGAGGTCGACCAAAGATGCACAATGCGTAAGTCGAGGATCAGC
578 ATGCAGGCACTCAACCGGTCGGAGA-G--G--CAAA-ATGCACAA-GC---A---G-GGATCAGC
* * * * * * * *
10436730 CCGATCCCCCTCTGCGTGCTGTCAATGCTGTTGCCGGTCCTGCTGCCACAA-CCCTAGATCCGGC
629 CCGATCCCCCTCTGCGCGCTGTCAATCCCGCTGCCGGTCCTACTACCACAACCCCCAG-TCCGAC
* * * *
10436794 TAG-GGCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCTACAAAACGAGCGTGCAGACG
693 T-GTGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCAGACA
** * ** * * *
10436858 CTCAGTC-GACCGAAGAGCCAGAATGCGTAAGTCAAGGATCAGCTCGGTCCCCC-CT-TGTGCTA
757 CTCAACCAG-CCGAAGAGCCAAAATGCACAAGCCAAGGATCAGCTCGATCCCCCGCTACGTGCTA
* ** * * *
10436920 CCGATCCTACTGCTGGTCCTACTGTCGTAACCCTCGGTCCGGTCCG
821 CAGATCCTACTGCTGGTCCTACTACCGTAAACCTCAGTCCAGTCCG
* * *
10436966 ATCTTAGACTAGGAATGAACTCCATATGCTTAGACATGGAATTAACTCCGTATGCCCAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAAC
* * * * ** * * *
10437031 CCATGAAACGAGCGTACGAGCGCTCAG-CCGATCGGAGAGGCAGAATAAGTAAGTCGGGGACCGA
66 CCATGAAATGAGCGTGCGGGCGCTCAGTCAG-TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA
* * * * * * * *
10437095 CTCGGTCCCTCCTGCGTGCTATTGATCCTGCTGCCACAACCCTCGGTCCGGTCCAATCCTAGACT
130 CCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGAC-
** * * * *
10437160 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGTGTGCGGGCACTGAGCCGATCGG
194 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGAGCGCTAAGCCGATCGG
*
10437225 AGAGGCATAATGCACAAGCCGGGGATCGACCCGATCCCCCTCTGCATGCTGCCGATCCC-CCGAC
259 AGAGGCATAATGCACAAGCCGAGGATCG-CCCGATCCCCCTCTGCATGCTGCCGATCCCACCG-C
* *
10437289 CACAGCCTTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACG
322 CACAGCCTTCGGTCCGGCT-GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* * * ** *
10437354 AAACGGGCGTGCGGGCACTCAGCTGGCC-AGAGAGGAAGAATGTGCAAGTCGAAGATCG-GCTCG
386 AAACGGGCGTGCGGGCACTCAGCTGGCCGA-AGAGGCAGAATGCGTAAGTCGGGGATCGACCT-G
* * * * * *
10437417 ATTCCCCCTACGTACTATCGATCCTGCTACTGCAACCCTCGATT-CG-GTCTGATCTTAGA-TGG
449 ATCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCG-TTCCGATTC-GATCTTAGACT-G
10437479 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGA
511 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGA
* * *
10437544 GCGTGCGGGCGCTCAA
576 GCATGCAGGCACTCAA
10437560 TCGAACAGAG
Statistics
Matches: 1226, Mismatches: 206, Indels: 70
0.82 0.14 0.05
Matches are distributed among these distances:
865 6 0.00
866 124 0.10
867 160 0.13
868 222 0.18
869 1 0.00
871 1 0.00
873 3 0.00
874 8 0.01
875 2 0.00
878 1 0.00
879 3 0.00
880 202 0.16
881 344 0.28
882 148 0.12
883 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (866 bp):
ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAAC
CCATGAAATGAGCGTGCGGGCGCTCAGTCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGAC
CCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGAGCGCTAAGCCGATCGGAG
AGGCATAATGCACAAGCCGAGGATCGCCCGATCCCCCTCTGCATGCTGCCGATCCCACCGCCACA
GCCTTCGGTCCGGCTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
GGCGTGCGGGCACTCAGCTGGCCGAAGAGGCAGAATGCGTAAGTCGGGGATCGACCTGATCCCCC
CTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGTTCCGATTCGATCTTAGACTGGGAATGAACT
CCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCATGCAGGC
ACTCAACCGGTCGGAGAGGCAAAATGCACAAGCAGGGATCAGCCCGATCCCCCTCTGCGCGCTGT
CAATCCCGCTGCCGGTCCTACTACCACAACCCCCAGTCCGACTGTGGCTTAGACATGGAATGAAC
TCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCAGACACTCAACCAGCCGAAGAGCCAAAAT
GCACAAGCCAAGGATCAGCTCGATCCCCCGCTACGTGCTACAGATCCTACTGCTGGTCCTACTAC
CGTAAACCTCAGTCCAGTCCG
Found at i:10437511 original size:26 final size:26
Alignment explanation
Indices: 10437470--10437522 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10437460 TCGGTCTGAT
10437470 CTTAGATGGGGAATGAACTCCGTATG
1 CTTAGATGGGGAATGAACTCCGTATG
*
10437496 CTTAGACTGGGG-ATGAACTCTGTATG
1 CTTAGA-TGGGGAATGAACTCCGTATG
10437522 C
1 C
10437523 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGATGGGGAATGAACTCCGTATG
Found at i:10438628 original size:159 final size:158
Alignment explanation
Indices: 10438231--10438663 Score: 405
Period size: 159 Copynumber: 2.7 Consensus size: 158
10438221 AACTCCATAT
* *
10438231 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAACGAGCGTGA-GGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGGGCGT-ACGGGTGCTC-
* * * *
10438295 ACCGGTCGGAGAGGCAGAATGCGCAAG-CTGGGGATCGACTCGGTCCCTCCCTGCGTGCTGTCAA
64 AGCAGTCGGAAAGGCAGAATGCGCAAGTC-GGGGATCGACTCGATCCC-CCCTGCGTGCTGTCAA
* ** * *
10438359 TCCTAATGCTGCAACCCTCGGTTCGATCCAAT
127 TCCCAATGCCACAACCCTCGGTCCGATCCAAG
** * * * * * *
10438391 G-TTAGAC-TGGGAATGAACTCCGTATGGATAAGTCAACCCACGAAACAAGG-GTACGAGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAC-GGGCGTACGGGTGCTC
* * * * * * *
10438453 AGCCGACTGAAGAGGCATAATGCGCAAGTCGAGGATC-AGCTCGATCCCCCTCTGTGTGCTGTCG
64 AGCAGTCGGAA-AGGCAGAATGCGCAAGTCGGGGATCGA-CTCGATCCCCC-CTGCGTGCTGTCA
* ** ***
10438517 GTCCCGCTGCCACAACCCTCGGTCCGA-CTGGG
126 ATCCCAATGCCACAACCCTCGGTCCGATCCAAG
* *
10438549 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGGGCGTACGGGTGCTCAG
10438614 TCAGTCGGAAAGGCAGAATGCGCAA-TCCGGGGATCGACTCGATCCCCCCT
66 -CAGTCGGAAAGGCAGAATGCGCAAGT-CGGGGATCGACTCGATCCCCCCT
10438664 CCATGCTATC
Statistics
Matches: 214, Mismatches: 46, Indels: 28
0.74 0.16 0.10
Matches are distributed among these distances:
158 18 0.08
159 185 0.86
160 11 0.05
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGGGCGTACGGGTGCTCAG
CAGTCGGAAAGGCAGAATGCGCAAGTCGGGGATCGACTCGATCCCCCCTGCGTGCTGTCAATCCC
AATGCCACAACCCTCGGTCCGATCCAAG
Found at i:10440509 original size:26 final size:26
Alignment explanation
Indices: 10440480--10440532 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10440470 CCGATCTAAT
10440480 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
10440506 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10440532 C
1 C
10440533 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10440807 original size:159 final size:158
Alignment explanation
Indices: 10440506--10441008 Score: 428
Period size: 159 Copynumber: 3.2 Consensus size: 158
10440496 ACTCCGTATG
* *
10440506 CTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGAAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * ** * **
10440570 CCGGTCGAAGAAGCAGAATGCACAA-ATCGGGGACCGG-TCTGGTCCTCGCCT-ACGTGCTGTCG
65 CCGGTCGGAGAGGCAGAATGCGCAAGCT-GAGGATCGGCTC-AATCC-CCCCTGA-GTGCTACCG
** * ** *
10440632 ATCCTACTACTGCAACCCTCAGTCCGATTCGAT
126 ATCCCGCTGCCACAACCCTCGGTCCGATTCGAT
* * * * * *
10440665 CTTAAACTGGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGCTGAGC
1 CTTAGACTGGAAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * *
10440730 CGGTCGGAGAGGCATAATGCGCAAG-TCGAGGTTC-GATCCAATCCCCCTCTGAGTGCTACCGAT
66 CGGTCGGAGAGGCAGAATGCGCAAGCT-GAGGATCGGCT-CAATCCCCC-CTGAGTGCTACCGAT
* * * *
10440793 CCCGCTGCCACAACCCTCGGTCTGACT-AAGG
128 CCCGCTGCCACAACCCTCGGTCCGATTCGA-T
* * * *
10440824 CTTCGACATGG-AATGAACTCCCTATGCCTAAGCCAACCCTTGAAACGGGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGAAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
** * * * * * *
10440888 CCGGTCGGAGAGGCAGAATTTGCAAGCTGGGGATCGGCTTAGTCCCCCCTGCGTGCTGCTGATCC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCTCAATCCCCCCTGAGTGCTACCGATCC
* * * *
10440953 TGCTGCCACAAACCTTGGTCCAATTCGAT
130 CGCTGCCACAACCCTCGGTCCGATTCGAT
10440982 CTTAGACTGGAAATGAACTCCATATGC
1 CTTAGACTGGAAATGAACTCCATATGC
10441009 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 58, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
157 3 0.01
158 61 0.22
159 202 0.74
160 8 0.03
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGAAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCTCAATCCCCCCTGAGTGCTACCGATCCC
GCTGCCACAACCCTCGGTCCGATTCGAT
Found at i:10441220 original size:26 final size:26
Alignment explanation
Indices: 10441191--10441243 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10441181 CTGGTCCGAT
*
10441191 CTTAGAC-TGGGAATGCACTCCGTATG
1 CTTAGACATGGG-ATGAACTCCGTATG
10441217 CTTAGACATGGGATGAACTCCGTATG
1 CTTAGACATGGGATGAACTCCGTATG
10441243 C
1 C
10441244 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGGATGAACTCCGTATG
Found at i:10441580 original size:710 final size:696
Alignment explanation
Indices: 10439977--10441618 Score: 1938
Period size: 697 Copynumber: 2.3 Consensus size: 696
10439967 GCTTAGACAT
* * *
10439977 GAAATGAACTCCGTAAGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAA-CCGGTCGGA
1 GAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCT-AAGCCGGTCGGA
* * * *
10440041 GAGGCAGAATGCGTAAGCCGAGGATCAACCCAACCCCCCTTTGCGTGCTGTCGGTCCCGTTACCA
65 GAGGCAGAATGCGCAAGCCGAGGATCAACCCAATCCCCCTCTGCGTGC-GTCGGTCCCGTTGCCA
* * * *
10440106 CAACCCTTGATCCGGCTGGGGCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
129 CAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
* * *
10440171 ACGGGCGTGCGGGCACTCAGCCGGTCGGAGATGCAGAATGCTCAACCGGGGATCAGCCTGGTCCC
194 ACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCTCAACCGGGGATCAGCCTAGTCCC
* * * *
10440236 CCCTGCCTGCTACTGATCCTGCTACCGCAACCCTCGGCCCAGTTTGATCGTAGACTGGAAATGAA
259 CCCTGCCTGCTACTGATCCTGCTACCACAAACCTCGGCCCAATTCGATCGTAGACTGGAAATGAA
* * *
10440301 CTCCATATGCTTAGACTGGAGATGAACTCCGAATGCCTAAGTCAACCCATGAAATGAGCGTGCAG
324 CTCCATATGCTTAGACTGGAGATGAACTCCGAATGCCTAAGCCAACCCACGAAATGAGAGTGCAG
* * * * *
10440366 GCGCTCAGCCGATGGGAGAGGCAAAATGTGCAAGCCGGGGATCGACGCGGTCCCCCCTGCGTGCT
389 GCACTCAACCGATGGGAGAGGCAAAATGTGCAAGCCGGAGATCGACCCGGTCCCCCATGCGTGCT
* * ** * *
10440431 GTCGATCCTGTTCCTAGTCCTATTGTCGTAACCCTCGGTCCGATCTAATCTTAGACTGAGAATGA
454 GTCGATCCTGCTCCTAGTCCTACTACCGCAACCCTCGGTCCGATCCAATCTTAGACTGAGAATGA
*
10440496 ACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG
519 ACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACG
* * * * ** * * *
10440561 GGCGCTCAGCCGGTCGAAGAAGCAGAATGCACAAATCGGGGACCGGTCTGGTCCTCGCCTACGTG
584 GGCGCTCAACCGGACGAAGAAGCAGAATGCACAAAACAGGGACCGACCCGATCCTCCCCTACGTG
10440626 CTGTCGATCCTACTACTGCAACCCTCAGTCCGATTCGATCTTAAACTG
649 CTGTCGATCCTACTACTGCAACCCTCAGTCCGATTCGATCTTAAACTG
* * * *
10440674 GAAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGCTGAGCCGGTCGGAG
1 GAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTAAGCCGGTCGGAG
* * * * * * * *
10440739 AGGCATAATGCGCAAGTCGAGGTTCGATCCAATCCCCCTCTGAGTGC-TACCGATCCCGCTGCCA
66 AGGCAGAATGCGCAAGCCGAGGATCAACCCAATCCCCCTCTGCGTGCGT--CGGTCCCGTTGCCA
* * ** * *
10440803 CAACCCTCGGTCTGACTAAGGCTTCGACATGGAATGAACTCCCTATGCCTAAGCCAACCCTTGAA
129 CAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
* * * *
10440868 ACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAAT-TTGCAAGCTGGGGATCGGCTTAGTC
194 ACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCT-CAA-CCGGGGATCAGCCTAGTC
* * * * * *
10440932 CCCCCTGCGTGCTGCTGATCCTGCTGCCACAAACCTTGGTCCAATTCGATCTTAGACTGGAAATG
257 CCCCCTGCCTGCTACTGATCCTGCTACCACAAACCTCGGCCCAATTCGATCGTAGACTGGAAATG
* * *
10440997 AACTCCATATGCTTAGACTGGGGAT-AACTCTGTATGCCTAAGCCAACCCACGAAATGAGAGTGC
322 AACTCCATATGCTTAGACTGGAGATGAACTCCGAATGCCTAAGCCAACCCACGAAATGAGAGTGC
* *
10441061 GGGCACTCAACCGATCGGAGAAGGCCGGCCAGAAAGGTAGAATTTGCAAGCCGGAGATC-AGCCC
387 AGGCACTCAACCGAT-GG-G-A-G-AGG-CA-AAA--T-G----TGCAAGCCGGAGATCGA-CCC
* * * * *
10441125 GGTCCCCCATGCGTGCTGTCGATCCTGCTCTTGGTCCTGCTACCGCAACCCTCGG-CCTGGTCCG
437 GGTCCCCCATGCGTGCTGTCGATCCTGCTCCTAGTCCTACTACCGCAACCCTCGGTCC-GATCCA
* * *
10441189 ATCTTAGACTGGGAATGCACTCCGTATGCTTAGACATGGGATGAACTCCGTATGCCTAAGCCAAC
501 ATCTTAGACTGAGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * *
10441254 CCATGAAACGAGGGTACGGGTGCTCAATC-GACGGGAGAGGCAGAATGCATAAAACAGGGACCGA
566 CCACGAAACGAGCGTACGGGCGCTCAACCGGAC-GAAGAAGCAGAATGCACAAAACAGGGACCGA
* * * * ** * * *
10441318 CCCGATCC-CCCCTGCGTTCTGTCGATCCTGCTA-TCGTAACCCTTGGTCTG-GTCTGATCTTAG
630 CCCGATCCTCCCCTACGTGCTGTCGATCCTACTACT-GCAACCCTCAGTCCGATTC-GATCTTAA
*
10441380 ATTG
693 ACTG
* * * * *
10441384 GGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCACTAAGCCAGTCGGAG
1 GAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTAAGCCGGTCGGAG
* ** *
10441449 AGGCAGAATACGCAAGCCTG-GGATCAACCCGGTCCCCCTCTGCGTGTCGTTGGTCCCGTTGCCA
66 AGGCAGAATGCGCAAGCC-GAGGATCAACCCAATCCCCCTCTGCGTG-CGTCGGTCCCGTTGCCA
* *
10441513 CAACCCTCGATCCGACTGGGGCTTAGACATGGAATGCACTCCCTATGTCTAAGCCAACCCATGAA
129 CAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
* * *
10441578 ACGGGCATTCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGC
194 ACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGC
10441619 GTAAGCCGAG
Statistics
Matches: 785, Mismatches: 132, Indels: 42
0.82 0.14 0.04
Matches are distributed among these distances:
695 1 0.00
696 2 0.00
697 247 0.31
698 95 0.12
699 1 0.00
700 1 0.00
701 1 0.00
702 2 0.00
703 2 0.00
704 3 0.00
706 1 0.00
707 1 0.00
709 3 0.00
710 242 0.31
711 182 0.23
712 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (696 bp):
GAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTAAGCCGGTCGGAG
AGGCAGAATGCGCAAGCCGAGGATCAACCCAATCCCCCTCTGCGTGCGTCGGTCCCGTTGCCACA
ACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC
GGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCTCAACCGGGGATCAGCCTAGTCCCCC
CTGCCTGCTACTGATCCTGCTACCACAAACCTCGGCCCAATTCGATCGTAGACTGGAAATGAACT
CCATATGCTTAGACTGGAGATGAACTCCGAATGCCTAAGCCAACCCACGAAATGAGAGTGCAGGC
ACTCAACCGATGGGAGAGGCAAAATGTGCAAGCCGGAGATCGACCCGGTCCCCCATGCGTGCTGT
CGATCCTGCTCCTAGTCCTACTACCGCAACCCTCGGTCCGATCCAATCTTAGACTGAGAATGAAC
TCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGG
CGCTCAACCGGACGAAGAAGCAGAATGCACAAAACAGGGACCGACCCGATCCTCCCCTACGTGCT
GTCGATCCTACTACTGCAACCCTCAGTCCGATTCGATCTTAAACTG
Found at i:10442905 original size:26 final size:26
Alignment explanation
Indices: 10442876--10442928 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10442866 CCGGTTAGAT
10442876 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
10442902 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10442928 C
1 C
10442929 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10443220 original size:196 final size:196
Alignment explanation
Indices: 10442853--10443227 Score: 504
Period size: 196 Copynumber: 1.9 Consensus size: 196
10442843 ATCTTGCTAC
* *
10442853 CGCAACCCTCGATCCGGTTAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGGATGA
1 CGCAACCCTCGATCCGGTTAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAATGA
* * *
10442918 ACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTACGGCCGTCAGCCGGCCGGAGAGGTAGAA
66 ACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTACGGCCGTCAGCCGACCGGAGAGGCAGAA
* * *** * **
10442983 TGCGCAAGCCGGGGATCGGTCCGATCCTTCCCTGTGTGCTGTCGATCCTGCTACTGGTCCTGTTG
131 TGCGCAAGCCGAGGACCAACCCGATCCTCCCCTACGTGCTGTCGATCCTGCTACTGGTCCTGTTG
10443048 T
196 T
* * *
10443049 CGCAACGCTCGATCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTCTGCTTAGACAT-GGAAT
1 CGCAACCCTCGATCCGGT-TAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-ATGGGAAT
* * * * *
10443112 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGGTCAGTCGATCGGAGAGGCA
64 GAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTAC-GGCCGTCAGCCGACCGGAGAGGCA
*
10443177 GAATGTGCAAGCCGAGGACCAACCCGATCC-CCCCTACGTGCTGTCGATCCT
128 GAATGCGCAAGCCGAGGACCAACCCGATCCTCCCCTACGTGCTGTCGATCCT
10443228 ACAGCCACAA
Statistics
Matches: 154, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
196 109 0.71
197 45 0.29
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.21
Consensus pattern (196 bp):
CGCAACCCTCGATCCGGTTAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAATGA
ACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTACGGCCGTCAGCCGACCGGAGAGGCAGAA
TGCGCAAGCCGAGGACCAACCCGATCCTCCCCTACGTGCTGTCGATCCTGCTACTGGTCCTGTTG
T
Found at i:10443592 original size:158 final size:157
Alignment explanation
Indices: 10443099--10443994 Score: 777
Period size: 158 Copynumber: 5.7 Consensus size: 157
10443089 CTCCGTCTGC
* *
10443099 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGGTCAGT
1 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * **
10443163 CGATCGGAGAGGCAGAATGTGCAAGCCGAGGACCAACCCGATCCCCCCTACGTGCTGTCGATCCT
65 CG-TCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCT
* * *
10443228 ACAGCCACAACCCTCAGTCC-AGTTCGATT
129 ACTGCCACAACCCTCAGTCCGA-TCCGATG
** * * * * *
10443257 TTAGACTGGGAATGAACTTTGCATGCCTAAGTCAACCCACGAAACGAGCGTTC-GACTGCTGAGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-GCTCAGC
* * * * * * *
10443321 CGGTCGGAGAGGCATAATACGCAAGCCGAAGATTGGCTCTATCCCCCTCTACGTGCTGTCGGTCC
65 C-GTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCC-CTACGTGCTGTCGATCC
** * * **
10443386 CGCTGCCACAACCCTCAGTCCG-GCTGGGG
128 TACTGCCACAACCCTCAGTCCGATCCGATG
* * * *
10443415 CTTAGACAT-GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAG
1 -TTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
10443479 CCAGTCGGAGAGGCAAAATGCGCAAGTCGGGGATCGACCCGGTCCACCCTGCGTGCTGTCGATCC
64 CC-GTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
* *
10443544 TACTGCCGCAACCCTC-GATCCGATCCAATG
128 TACTGCCACAACCCTCAG-TCCGATCCGATG
* * * * *
10443574 TTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAGTC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * ** *
10443639 GATCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCTCGGTCCCTCCTGTGTGCTGTCGATCCTG
66 G-TCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTA
* * * * *
10443704 CTGTCGCAACCCTCGGTCCGATTCGATC
130 CTGCCACAACCCTCAGTCCGATCCGATG
* * *
10443732 TTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * ** *
10443797 TGCCGGAGAGGCATAATACGCAAGCC-AGGGATCGGCCCGATCCCCTTCTATGCGCTACCGGTCC
66 -GTCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGGCCCGATCCCC-CCTACGTGCTGTCGATCC
** * * * **
10443861 TACTGCCACAACCCTTGGTTCG-GCTGGGG
128 TACTGCCACAACCCTCAGTCCGATCCGATG
* * *
10443890 CTTAGACAT-GGAATGAACT-CGCTATGCCTAAGCCAACTCATGAAACGGGCGTGCGGGCGCTCA
1 -TTAGAC-TGGGAATGAACTCCG-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
10443953 GTCGGTCAGAGAGGTAGAATGCGTATGCCGAGGATCGACCCG
63 G-CCGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCG
10443995 GTCCTCATTG
Statistics
Matches: 586, Mismatches: 131, Indels: 41
0.77 0.17 0.05
Matches are distributed among these distances:
157 7 0.01
158 341 0.58
159 232 0.40
160 6 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTAC
TGCCACAACCCTCAGTCCGATCCGATG
Found at i:10443864 original size:317 final size:313
Alignment explanation
Indices: 10443097--10443998 Score: 902
Period size: 317 Copynumber: 2.8 Consensus size: 313
10443087 AACTCCGTCT
*
10443097 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGGTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
10443162 TCGATCGGAGAGGCAGAATGTGCAAGCCGAGGACCAACCCGATCCCCCCTACGTGCTGTCGATCC
66 CCG-TCGGAGAGGCAAAATGCGCAAGCCG-GGATCGACCCGAT-CCCCCTACGTGCTGTCGATCC
* * * * * *
10443227 TACAGCCACAACCCTC-AGTCC-AGTTCGATTTTAGACTGGGAATGAACTTTGCATGCCTAAGTC
128 TACTGCCACAACCCTCGA-TCCGA-TCCGATGTTAGACTGGGAATGAACTCTGTATGCCTAAGCC
* * * * * * *
10443290 AACCCACGAAACGAGCGTTC-GACTGCTGAGCCGGTCGGAGAGGCATAATACGCAAGCCGAAGAT
191 AACCCACGAAACGAGCGTACGGGC-GCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGAT
* ** * * * *
10443354 TGGCTCTATCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCAGTCCGGCTGGG
255 CGGCTCGGTCCCCCTCTA-GTGCTGTCGATCCCGCTGCCACAACCCTCAGTCCGACTCGA
* * * *
10443414 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
10443479 CCAGTCGGAGAGGCAAAATGCGCAAGTCGGGGATCGACCCGGTCCACCCTGCGTGCTGTCGATCC
66 CC-GTCGGAGAGGCAAAATGCGCAAG-CCGGGATCGACCCGATCC-CCCTACGTGCTGTCGATCC
* *
10443544 TACTGCCGCAACCCTCGATCCGATCCAATGTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
128 TACTGCCACAACCCTCGATCCGATCCGATGTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
* * * *
10443609 CCCACGAAACGAGCATACGGGCACTCAGTCGATCGGAGAGGCAGAATGCGCAAGCTGAGGATCGG
193 CCCACGAAACGAGCGTACGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGG
* * * * * *
10443674 CTCGGTCCCTCCTGT-GTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGATTCGA
258 CTCGGTCCC-CCTCTAGTGCTGTCGATCCCGCTGCCACAACCCTCAGTCCGACTCGA
* * * *
10443730 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * ** *
10443794 GCCTGCCGGAGAGGCATAATACGCAAGCCAGGGATCGGCCCGATCCCCTTCTATGCGCTACCGGT
65 GCC-GTCGGAGAGGCAAAATGCGCAAGCC-GGGATCGACCCGATCCCC--CTACGTGCTGTCGAT
* * * * * **
10443859 CCTACTGCCACAACCCTTGGTTCG-GCTGGGGCTTAGACAT-GGAATGAACTC-GCTATGCCTAA
126 CCTACTGCCACAACCCTCGATCCGATCCGATG-TTAGAC-TGGGAATGAACTCTG-TATGCCTAA
* * * * * * * *
10443921 GCCAACTCATGAAACGGGCGTGCGGGCGCTCAGTCGGTCAGAGAGGTAGAATGCGTATGCCGAGG
188 GCCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCGAGG
* *
10443986 ATCGACCCGGTCC
253 ATCGGCTCGGTCC
10443999 TCATTGCCTG
Statistics
Matches: 482, Mismatches: 89, Indels: 28
0.80 0.15 0.05
Matches are distributed among these distances:
315 4 0.01
316 128 0.27
317 338 0.70
318 12 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (313 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGTCGGAGAGGCAAAATGCGCAAGCCGGGATCGACCCGATCCCCCTACGTGCTGTCGATCCTAC
TGCCACAACCCTCGATCCGATCCGATGTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCC
ACGAAACGAGCGTACGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTC
GGTCCCCCTCTAGTGCTGTCGATCCCGCTGCCACAACCCTCAGTCCGACTCGA
Found at i:10443997 original size:475 final size:475
Alignment explanation
Indices: 10443099--10443998 Score: 1232
Period size: 475 Copynumber: 1.9 Consensus size: 475
10443089 CTCCGTCTGC
* * **
10443099 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGGTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAGTC
*
10443164 GATCGGAGAGGCAGAATGTGCAAGCCGAGGACCAACCCGATCCCCCCTACGTGCTGTCGATCCTA
66 GATCGGAGAGGCAGAATGCGCAAGCCGAGGACCAACCCGATCCCCCCTACGTGCTGTCGATCCTA
* *
10443229 CAGCCACAACCCTCAGTCCAGTTCGATTTTAGACTGGGAATGAACTTTGCATGCCTAAGTCAACC
131 CAGCCACAACCCTCAGTCCAGTTCGATCTTAGACTGGGAATGAACTTCGCATGCCTAAGTCAACC
* * * * *
10443294 CACGAAACGAGCGTTCGACTGCTGAGCCGGTCGGAGAGGCATAATACGCAAGCCGAAGATTGGCT
196 CACGAAACGAGCGTGCGACTGCTAAGCCGGCCGGAGAGGCATAATACGCAAGCCGAAGATCGGCC
* * ** *
10443359 CTATCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACAT
261 CGATCCCCCTCTACGCGCTACCGGTCCCACTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACAT
* *
10443424 GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAGCCAGTCGGAG
326 GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCAGTCAGAG
* *
10443489 AGGCAAAATGCGCAAGTCGGGGATCGACCCGGTCCACCCTGCGTGCTGTCGATCCTACTGCCGCA
391 AGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCACCCTGCGTGCTGTCGATCCTACTGCCGCA
10443554 ACCCTCGATCCGATCCAATG
456 ACCCTCGATCCGATCCAATG
*
10443574 TTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAGT
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAGT
* * ** * * * **
10443638 CGATCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCTCGGTCCCTCCTGTGTGCTGTCGATCCT
65 CGATCGGAGAGGCAGAATGCGCAAGCCGAGGACCAACCCGATCCCCCCTACGTGCTGTCGATCCT
* * * * * *
10443703 GCTGTCGCAACCCTCGGTCC-GATTCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
130 ACAGCCACAACCCTCAGTCCAG-TTCGATCTTAGACTGGGAATGAACTTCGCATGCCTAAGTCAA
* * *
10443767 CCCACGAAACGAGCGTGCGGGC-GCTAAGCCTGCCGGAGAGGCATAATACGCAAGCC-AGGGATC
194 CCCACGAAACGAGCGTGC-GACTGCTAAGCCGGCCGGAGAGGCATAATACGCAAGCCGA-AGATC
* * * ** *
10443830 GGCCCGATCCCCTTCTATGCGCTACCGGTCCTACTGCCACAACCCTTGGTTCGGCTGGGGCTTAG
257 GGCCCGATCCCCCTCTACGCGCTACCGGTCCCACTGCCACAACCCTCAGTCCGGCTGGGGCTTAG
* * * * * *
10443895 ACATGGAATGAACTCGCTATGCCTAAGCCAACTCATGAAACGGGCGTGCGGGCGCTCAGTCGGTC
322 ACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCAGTC
* * * *
10443960 AGAGAGGTAGAATGCGTATGCCGAGGATCGACCCGGTCC
387 AGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCC
10443999 TCATTGCCTG
Statistics
Matches: 365, Mismatches: 56, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
474 3 0.01
475 360 0.99
476 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (475 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAGTC
GATCGGAGAGGCAGAATGCGCAAGCCGAGGACCAACCCGATCCCCCCTACGTGCTGTCGATCCTA
CAGCCACAACCCTCAGTCCAGTTCGATCTTAGACTGGGAATGAACTTCGCATGCCTAAGTCAACC
CACGAAACGAGCGTGCGACTGCTAAGCCGGCCGGAGAGGCATAATACGCAAGCCGAAGATCGGCC
CGATCCCCCTCTACGCGCTACCGGTCCCACTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACAT
GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCAGTCAGAG
AGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCACCCTGCGTGCTGTCGATCCTACTGCCGCA
ACCCTCGATCCGATCCAATG
Found at i:10444065 original size:26 final size:26
Alignment explanation
Indices: 10444036--10444088 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10444026 CCGGTCCGAT
10444036 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
10444062 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
10444088 C
1 C
10444089 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:10444913 original size:609 final size:597
Alignment explanation
Indices: 10443767--10444973 Score: 1642
Period size: 609 Copynumber: 2.0 Consensus size: 597
10443757 CCTAAGTCAA
* * * *
10443767 CCCACGAAACGAGCGTGCGGGCGCTAAGCCTGCCGGAGAGGCATAATACGCAAGCCAGGGATCGG
1 CCCACGAAACGAGCGTGCGGGCACTAAGCCGGCCGGAGAGGCATAATACACAAGCCAGGGATCGA
* * * * *
10443832 CCCGATCCCCTTCTATGCGCTACCGGTCCTACTGCCACAACCCTTGGTTCGGCTGGGGCTTAGAC
66 CCCGATCCCCTTCTACGCACTACCGGTCCTACTGCCACAACCCTCGGTCCCGCTGGGGCTTAGAC
* * * * ** **
10443897 ATGGAATGAACTCGCTATGCCTAAGCCAACTCATGAAACGGGCGTGCGGGCGCTCAGTCGGTCAG
131 ATGGAATGAAATCCCTACGCCTAAGCCAACTCATGAAACGGGCATGCGGGCGCTCAACCGACCAG
* * * * * * *
10443962 AGAGGTAGAATGCGTATGCCGAGGATCGACCCGGTCCTCATTGCCTGCTGTCGTAAACCTCGGTC
196 AAAGGCAGAATACGCAAGCCGAGGATCGACCCGCTCCTCATTGCCTGCTGCCGTAAACCTCGGTC
* * * *
10444027 CGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGATTGGGGATGAACTCCGTATGCCTA
261 CGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTCAGACTGGGGATGAACTCCGTATACCTA
* ** * * * *
10444092 AGTCAACCCTCCCCACGAGCGTGCGGACATTCAGCCAACCAGAGAGGCAGGATGCGCAAGCCAGG
326 AGTCAACCCACCAAACGAGCCTACGGACACTCAGCCAACCAGAGAGGCAAGATGCGCAAGCCAGG
* *
10444157 GATCGAACGGGTGGTTGGTGGGTTCAAGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTT
391 GATCGAACGGGTGGTTGGTAGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
* *
10444222 GTGGCTTGTAAATTCATACAATGGTCCCCTACGCCTTCATGTGAAGTTTCGTGGCAAGACGACCC
456 ATGGCTTGTAAATTCATACAATGGTCCCCTACACCTTCATGTGAAGTTTCGTGGCAAGACGACCC
* * ** *
10444287 ATTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGATTCGAGATTTTTTTAAATTTTTTTAGAA
521 ATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTCGAGATTTTTCAAAATTTTTTAAGAA
10444352 AGAGTTTTGTCC
586 AGAGTTTTGTCC
* * *
10444364 CCCACGAAACGAGTGTGCGGGCACTAAGCCGGCCGGAGAGGCATAATGCACAAGCTAGGGATCGA
1 CCCACGAAACGAGCGTGCGGGCACTAAGCCGGCCGGAGAGGCATAATACACAAGCCAGGGATCGA
** * * ** * *
10444429 TTCGATCCCTTTCTACGTACTGTCGGTCCTGCTGCCACAGCCCTCGGTCCCGCTGGGGCTTAGAC
66 CCCGATCCCCTTCTACGCACTACCGGTCCTACTGCCACAACCCTCGGTCCCGCTGGGGCTTAGAC
*
10444494 ATGGAATGAAATCCCTACGCCTAAGCCAACTCATGAAACGGGCATGCAGGG-GCTCAACCGACCG
131 ATGGAATGAAATCCCTACGCCTAAGCCAACTCATGAAACGGGCATGC-GGGCGCTCAACCGACCA
* * *
10444558 GAAAGGCGGAATACGCAAGCCGAGGATCGGCCCGATCCTCCCTGCATGTTACCGATCTAGCTGCC
195 GAAAGGCAGAATACGCAAGCCGAGGATCGACCCG---CT-CCT-CA--TT---G-CCT-GCTGCC
*
10444623 GTAAACCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTTCGTATGCTCAGACTGGGGATGAA
248 GTAAACCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTCAGACTGGGGATGAA
* * * *
10444688 CTCCGTATACCTAAGTCAATCCACGAAACGAGCCTACGGACGCTCAGCCGACCAGAGAGGCAAGA
313 CTCCGTATACCTAAGTCAACCCACCAAACGAGCCTACGGACACTCAGCCAACCAGAGAGGCAAGA
* *
10444753 TGCGTAAGCCGGGGATCGAACGGGTGGTTGGTAGGTTCAAGCACATCTTCATATTTCTGCCATGC
378 TGCGCAAGCCAGGGATCGAACGGGTGGTTGGTAGGTTCAAGCACATCTTCATATTTCTGCCATGC
10444818 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTACACCTTCATGTGAAGTTTCGT
443 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTACACCTTCATGTGAAGTTTCGT
* * * *
10444883 GGCAAGAGGACCCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTCAA
508 GGCAAGACGACCCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTCGAGATTTTTCAA
* *
10444948 AATTTTTTAAGAATGCGTTTTGTCC
573 AATTTTTTAAGAAAGAGTTTTGTCC
10444973 C
1 C
10444974 AAAATTTGGT
Statistics
Matches: 525, Mismatches: 72, Indels: 14
0.86 0.12 0.02
Matches are distributed among these distances:
597 188 0.36
598 3 0.01
600 1 0.00
601 3 0.01
602 2 0.00
604 2 0.00
607 1 0.00
608 2 0.00
609 323 0.62
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.25
Consensus pattern (597 bp):
CCCACGAAACGAGCGTGCGGGCACTAAGCCGGCCGGAGAGGCATAATACACAAGCCAGGGATCGA
CCCGATCCCCTTCTACGCACTACCGGTCCTACTGCCACAACCCTCGGTCCCGCTGGGGCTTAGAC
ATGGAATGAAATCCCTACGCCTAAGCCAACTCATGAAACGGGCATGCGGGCGCTCAACCGACCAG
AAAGGCAGAATACGCAAGCCGAGGATCGACCCGCTCCTCATTGCCTGCTGCCGTAAACCTCGGTC
CGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTCAGACTGGGGATGAACTCCGTATACCTA
AGTCAACCCACCAAACGAGCCTACGGACACTCAGCCAACCAGAGAGGCAAGATGCGCAAGCCAGG
GATCGAACGGGTGGTTGGTAGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCCTACACCTTCATGTGAAGTTTCGTGGCAAGACGACCC
ATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTCGAGATTTTTCAAAATTTTTTAAGAA
AGAGTTTTGTCC
Found at i:10445788 original size:163 final size:158
Alignment explanation
Indices: 10445401--10445969 Score: 454
Period size: 163 Copynumber: 3.6 Consensus size: 158
10445391 TGAACTTCGT
* * * * *
10445401 ATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAACGAGCGTGGGGGCGC
1 ATGCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACG-AAACGAGCGTGCGGGCGT
* * * * * * * * * **
10445465 TCAACCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATC-AGCCTGGTCCCCCTCTGTGTGCT-T
64 TCAGCC-GACCGAAAGGCAGAATGCACAAGCCGAGGACCGA-CCCGGTCCCCC-CTGCATGCTAT
* * *** * *
10445528 CCAGT-CTCATTGTAACAACCCTCAG-TCCGGCTG
126 CGA-TCCT-ACTGCCGCAACCCTCAGTTCAGTCTG
** ** * * *
10445561 GGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGTT
1 ATGCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTT
** *** * * * *
10445625 CAAACGACCGGAAAGGCAGAATGTGGAAGTCGAGGATCGACCCGGTCCCCCCTGCATGCTGTTGA
65 CAGCCGACC-GAAAGGCAGAATGCACAAGCCGAGGACCGACCCGGTCCCCCCTGCATGCTATCGA
* *
10445690 TCCTACTGCCGCAAACCTCGATCTGATTC-GATCTT
129 TCCTACTGCCGC-AACC-C--TCAG-TTCAG-TCTG
* *
10445725 ATGCTTAGACTGGGAAT-AACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGTTC
1 ATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTC
* *
10445789 AGCCGATCGAAGAGGCAGAATGCACAAGCCGGGGACCGACCCGGTCCCCCCTGCATGCTATCGAT
66 AGCCGACCGAA-AGGCAGAATGCACAAGCCGAGGACCGACCCGGTCCCCCCTGCATGCTATCGAT
*
10445854 CCTGCTGCCGCAACCCTCAGTTCAGTCTG
130 CCTACTGCCGCAACCCTCAGTTCAGTCTG
* * * * *
10445883 AT-CTTAGACTGGGAATGAATTTTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGACGCTC
1 ATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTC
*
10445947 AGCCGACCAGAGAGGCAGAATGC
66 AGCCGACC-GAAAGGCAGAATGC
10445970 GTAAGCCAGG
Statistics
Matches: 332, Mismatches: 61, Indels: 34
0.78 0.14 0.08
Matches are distributed among these distances:
157 14 0.04
158 80 0.24
159 65 0.20
160 43 0.13
161 1 0.00
162 10 0.03
163 102 0.31
164 17 0.05
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
ATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTC
AGCCGACCGAAAGGCAGAATGCACAAGCCGAGGACCGACCCGGTCCCCCCTGCATGCTATCGATC
CTACTGCCGCAACCCTCAGTTCAGTCTG
Found at i:10447052 original size:159 final size:158
Alignment explanation
Indices: 10446591--10447093 Score: 453
Period size: 159 Copynumber: 3.2 Consensus size: 158
10446581 ACTCCGTATG
* * *
10446591 CTTAGACATGTAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG-
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAGC
* * * * * *
10446655 TCGGCCGGAGAGGCAAAATGCACAAGCCAAGGATCGACCTGAT-CCCCCCTACGTGCTGTAGATC
66 T-GACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACC-GATCCCCCCCTGCGTGCTGTCGATC
**
10446719 CTGC-CATCGCAACCCTCGGTCCAGTCCAAT
129 CTGCTC-TCGCAACCCTCAATCCAGTCCAAT
* * * * *
10446749 CTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCACAAAAAGAGCGCGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAGC
* * * * * *
10446814 CGACCGAAAAGGCAGAATGCGCAAGCCAGAGATCGACCCG-GCCCCCCTCTGGGTGCTGTCGATC
66 TGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGA-CCGATCCCCCC-CTGCGTGCTGTCGATC
* * * ****
10446878 CCGCTGC-CACAACCCTCAATCCGGCTGGGGT
129 CTGCT-CTCGCAACCCTCAATCCAG-TCCAAT
* * * * *
10446909 -TTAGACATGGAATGAACTCCCTATGCCTAAACCAGCCCACGAAATGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAGC
* * * * *
10446973 TGACCGGAGAGGCAGAATGCGTAAGCTAGGGATCGGCTCGATCCCCCCCTGTGTGCTGCCGATCC
66 TGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGAC-CGATCCCCCCCTGCGTGCTGTCGATCC
* ** ** ***
10447038 TGCTCTCGCCACCCTCGGTCTGGTTTGAT
130 TGCTCTCGCAACCCTCAATCCAGTCCAAT
10447067 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
10447094 TTAGATTGGG
Statistics
Matches: 274, Mismatches: 59, Indels: 23
0.77 0.17 0.06
Matches are distributed among these distances:
158 96 0.35
159 169 0.62
160 8 0.03
161 1 0.00
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAGC
TGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCGATCCCCCCCTGCGTGCTGTCGATCCT
GCTCTCGCAACCCTCAATCCAGTCCAAT
Found at i:10447103 original size:26 final size:26
Alignment explanation
Indices: 10447067--10447119 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10447057 CTGGTTTGAT
10447067 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
10447093 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10447119 C
1 C
10447120 CTGAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10447314 original size:26 final size:26
Alignment explanation
Indices: 10447276--10447328 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10447266 CCAATCTAAT
10447276 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* *
10447302 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAAAGAACTCCGTATG
10447328 C
1 C
10447329 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:10448670 original size:26 final size:26
Alignment explanation
Indices: 10448629--10448681 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10448619 CTGGTTTGAT
10448629 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
10448655 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
10448681 C
1 C
10448682 CTGAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:10449316 original size:158 final size:158
Alignment explanation
Indices: 10448855--10449358 Score: 450
Period size: 159 Copynumber: 3.2 Consensus size: 158
10448845 AACTCTGTAT
* * *
10448855 GCTTAGACATGAAATGAACTCCATATGCCTAAGCCAACCCATG-AACTGAGCGTACGGGCATTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAC-GAGCGTACGGGCACTCA
* * * * * *
10448919 ACCGAACGGAGAGGCAGAATGCACAAGTCGGGGACCGACCTGGTCCCCCCCTGCGTGCTGTCGAT
65 ACCGATCGGAAAGGCAGAATGCGCAAGTCGGGGATCGACCCGAT-CCCCCCTGCGTGCTGTCGAT
* *
10448984 CCTGCTTCTGCAACCCTCGGTCCGGTCTGA
129 CCTGCTGCTGCAACCCTCGGTCCGGACTGA
* * * * * * *
10449014 TCTTAGAC-TGGGAATGAAATCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCA
** * * * * * * * *
10449078 GTCGATC-GAAGAGGCATAATACGCAAGTCGAGGATGGGCTCGATCCCCCTCTACGTGCTGCCGA
65 ACCGATCGGAA-AGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCC-CTGCGTGCTGTCGA
* *
10449142 TCCCGCTGC--CACACCCTCGGTCC-GACTGGG
128 TCCTGCTGCTGCA-ACCCTCGGTCCGGACT-GA
* * * * *
10449172 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAGCCCACGAAACGGGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAA
* * * *
10449237 CCGGTCGGAAAGGCAGAATGCGTAAG-CTGGGGTTCGACCCAATCCCCCCTGCGTGCTGTCGATC
66 CCGATCGGAAAGGCAGAATGCGCAAGTC-GGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATC
* * *
10449301 CTGCTGCTGTAACCCTCCGATCC-GATCCGA
130 CTGCTGCTGCAACCCT-CGGTCCGGA-CTGA
* *
10449331 TCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
10449359 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 62, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
157 26 0.10
158 108 0.40
159 132 0.49
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAA
CCGATCGGAAAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
TGCTGCTGCAACCCTCGGTCCGGACTGA
Found at i:10449361 original size:26 final size:26
Alignment explanation
Indices: 10449332--10449384 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10449322 CCGATCCGAT
*
10449332 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* *
10449358 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
10449384 C
1 C
10449385 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:10450037 original size:158 final size:157
Alignment explanation
Indices: 10449844--10450236 Score: 413
Period size: 158 Copynumber: 2.5 Consensus size: 157
10449834 CTGACCTTGG
* * * *
10449844 TCCCCCTACATGCTGTCGATCCTACTGCCGTAACCCTTGGTCTGGTCTGATCTTAGACTGGGAAT
1 TCCCTCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAAT
* ** * **
10449909 GAACTTCGTATGCCTAAGTTAACCCACGAACAA-GCGT-T-CAGGT-GCTGAGCCGGTCAGAGAG
66 GAACTCCGTATGCCTAAGCCAACCCA-GAA-AACGCGTGTAC-GGTCGCTCAGCCGACCAGAGAG
* **
10449970 GCATAATGCGCAAGCTGGGGATCAGCCCGA
128 GCAAAATGCGCAAGCAAGGGATCAGCCCGA
* * * * * * **
10450000 TCCCTCT-CTGTGTGCTGTCGATCCCACTACCACAACCCTCGAT-TCGACTGCGGCTTAGACAT-
1 TCCCTCTAC---GTGCTGTCGATCCTACTGCCGCAACCCTCGGTCTGGTCTG-ATCTTAGAC-TG
* * * *
10450062 GGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGTGTACGGTCGCTCAGCCGACCGGAG
61 GGAATGAACTCCGTATGCCTAAGCCAACCCAGAAAACGCGTGTACGGTCGCTCAGCCGACCAGAG
10450127 AGGCAAAATGCGCAAGCAAGGGATCAGCCCGA
126 AGGCAAAATGCGCAAGCAAGGGATCAGCCCGA
* * *
10450159 TCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAAT
1 TCCCTCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAAT
10450224 GAACTCCGTATGC
66 GAACTCCGTATGC
10450237 TTAGACTGGG
Statistics
Matches: 188, Mismatches: 37, Indels: 23
0.76 0.15 0.09
Matches are distributed among these distances:
155 1 0.01
156 9 0.05
157 61 0.32
158 66 0.35
159 50 0.27
160 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.22
Consensus pattern (157 bp):
TCCCTCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGCCAACCCAGAAAACGCGTGTACGGTCGCTCAGCCGACCAGAGAGGCA
AAATGCGCAAGCAAGGGATCAGCCCGA
Found at i:10450236 original size:157 final size:156
Alignment explanation
Indices: 10449737--10450236 Score: 408
Period size: 158 Copynumber: 3.2 Consensus size: 156
10449727 ACTCCGTATG
* * * ** *
10449737 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACACACGAAACAAGCGTGCGGGCACTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACG-AACAAGCGTTCAGGTGCTCAG
* * * * * * * * * *
10449801 CCTG-CCGGAGAGGTAGAATGCACAAGC-CGGAGA-CTGACCTTGGTCCCCCTACATGCTGTCGA
64 CC-GACCAGAGAGGCAAAATGCGCAAGCAAGG-GATCAG-CC-CGATCCCTCTACGTGCTGTCGA
* * * *
10449863 TCCTACTGCCGTAACCCTTGGTCTGGTCTGAT
125 TCCTACTGCCGCAACCCTCGGTCCGGTCTAAT
* ** *
10449895 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTTAACCCACGAACAAGCGTTCAGGTGCTGAGCC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAACAAGCGTTCAGGTGCTCAGCC
** * **
10449960 GGTCAGAGAGGCATAATGCGCAAGCTGGGGATCAGCCCGATCCCTCT-CTGTGTGCTGTCGATCC
66 GACCAGAGAGGCAAAATGCGCAAGCAAGGGATCAGCCCGATCCCTCTAC---GTGCTGTCGATCC
* * * * * * ***
10450024 CACTACCACAACCCTCGATTC-GACTGCGG
128 TACTGCCGCAACCCTCGGTCCGGTCT-AAT
* * *
10450053 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCA-TAA-AACGGGTGT-ACGGTCGCT
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAACAA-GCGT-TCA-GGT-GCT
*
10450114 CAGCCGACCGGAGAGGCAAAATGCGCAAGCAAGGGATCAGCCCGATCCCTCTACGTGCTGTCGAT
61 CAGCCGACCAGAGAGGCAAAATGCGCAAGCAAGGGATCAGCCCGATCCCTCTACGTGCTGTCGAT
*
10450179 CCTGCTGCCGCAACCCTCGGTCCGGTCTAAT
126 CCTACTGCCGCAACCCTCGGTCCGGTCTAAT
10450210 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
10450237 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 57, Indels: 33
0.75 0.16 0.09
Matches are distributed among these distances:
155 1 0.00
156 11 0.04
157 101 0.38
158 106 0.39
159 49 0.18
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAACAAGCGTTCAGGTGCTCAGCC
GACCAGAGAGGCAAAATGCGCAAGCAAGGGATCAGCCCGATCCCTCTACGTGCTGTCGATCCTAC
TGCCGCAACCCTCGGTCCGGTCTAAT
Found at i:10450239 original size:26 final size:26
Alignment explanation
Indices: 10450210--10450262 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10450200 CCGGTCTAAT
10450210 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10450236 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10450262 C
1 C
10450263 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10450859 original size:158 final size:157
Alignment explanation
Indices: 10450529--10450872 Score: 388
Period size: 158 Copynumber: 2.2 Consensus size: 157
10450519 GTCCGGTCCA
* * * *
10450529 ATCTTAGACTGGTAATGAACTCCGTATGCCTAAGTCAACCCACGAATGGGCGTGTGGGCGCTGAG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAATGGGCGTGCGGGCGCTCAG
* * * *
10450594 CCAGTCGGAGAGGCATAATGCACAAGCCGGGGATCGGCCAGGTCCCCCTCTGTGTGCTGCCAATC
66 CCAGCCGGAGAGGCAAAATGCACAAGCCGGGGATCAGCCAGGTCCCCCTCTGCGTGCTGCCAATC
* *
10450659 CCGCAGCCACAACCCTCGATCCGGCTG
131 CCACAGCCACAACCCTCGATCCAGCTG
** * * *
10450686 GGCTTAGACAT-GGAATGAACTCCTTATTCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTC
1 ATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACG-AATGGGCGTGCGGGCGCTC
** * * * **
10450750 AGCC-GACCGGAGAGGCAAAATGCGTAAGTCGGGTATCAGCCCGGTCCCCC-CTGCGTGCTGCTG
64 AGCCAG-CCGGAGAGGCAAAATGCACAAGCCGGGGATCAGCCAGGTCCCCCTCTGCGTGCTGCCA
* * * *
10450813 ATCCTACTGCCGCAACCCTCGATCTAGCTCG
128 ATCCCACAGCCACAACCCTCGATCCAGCT-G
*
10450844 ATCTTAGGCTGGGAATGAACTCCGTATGC
1 ATCTTAGACTGGGAATGAACTCCGTATGC
10450873 TTAGACTAGG
Statistics
Matches: 151, Mismatches: 31, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
157 70 0.46
158 81 0.54
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.20
Consensus pattern (157 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAATGGGCGTGCGGGCGCTCAG
CCAGCCGGAGAGGCAAAATGCACAAGCCGGGGATCAGCCAGGTCCCCCTCTGCGTGCTGCCAATC
CCACAGCCACAACCCTCGATCCAGCTG
Found at i:10451582 original size:26 final size:26
Alignment explanation
Indices: 10451544--10451594 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
10451534 GGCTCAAACT
10451544 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
10451570 CTTAGAC-ATGGAATGAACTTCGTAT
1 CTTAGACTA-GGAATGAACTCCGTAT
10451595 ACCTAACCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:10452051 original size:159 final size:156
Alignment explanation
Indices: 10451570--10452073 Score: 413
Period size: 159 Copynumber: 3.2 Consensus size: 156
10451560 ACTCCGTATG
* * * * * * * *
10451570 CTTAGACATGGAATGAACTTCGTATACCTAACCCAACCCACGAAATGAGTGTACGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGCGCTCAGC
* * * * *
10451635 CGGCCAGAGAGGCAGAATGTGCAAGTCGGGG-TTCGGCCTGGTCCCCCCCTACGAGCGTA-GATC
66 CAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATT-GGCC-GATCCCCCCCTACGAGC-TACAATC
* * *
10451698 CTGCTGCCACAACCCTCGATTTGATCTGAT
128 CTACTGCCACAACCCTCGA-TTGGTTTGAT
* ** ** * * * *
10451728 CTTAGACTTGGAAATGAACTCCGTATGCGAAAGTTAACCCACGAAAC-GAACATGCAGGCGCTGA
1 CTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGA-GTGCGGGCGCTCA
* * * ** * * *
10451792 GCCAGCCGAAGAGGCATAATGCGCAAGCCGGGGATTGGCCCGATCCCCTTCTACGTGCTGCCAGT
64 GCCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATTGG-CCGATCCCCCCCTACGAGCT-ACAAT
* * * * * **
10451857 CCCACTGCCACAACCCTTGATTCAGCTGGGG
127 CCTACTGCCACAACCCTCGATT-GGTTTGAT
* * *
10451888 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGAGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGCGCTCAGC
* * *
10451953 CAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATTGTCTCGATCCCCCCCTGCGCGCTATCAATCC
66 CAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATTGGC-CGATCCCCCCCTACGAGCTA-CAATCC
* * *
10452018 TACTGTCGCAACCCTCGGTCTGGTTTGAT
129 TACTGCCACAACCCTCGAT-TGGTTTGAT
*
10452047 CTTAGAC-TAGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
10452074 TTAGACTGGG
Statistics
Matches: 260, Mismatches: 74, Indels: 23
0.73 0.21 0.06
Matches are distributed among these distances:
158 13 0.05
159 211 0.81
160 36 0.14
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGCGCTCAGC
CAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATTGGCCGATCCCCCCCTACGAGCTACAATCCTA
CTGCCACAACCCTCGATTGGTTTGAT
Found at i:10452088 original size:26 final size:26
Alignment explanation
Indices: 10452047--10452099 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10452037 CTGGTTTGAT
*
10452047 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
10452073 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
10452099 C
1 C
10452100 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:10453475 original size:25 final size:26
Alignment explanation
Indices: 10453437--10453488 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
10453427 TGGCTCAAAA
10453437 GCTTAGACTGGGAATGAAC-CCGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
10453462 GCTTAGACAT-GGAATGAACTCCGTAT
1 GCTTAGAC-TGGGAATGAACTCCGTAT
10453488 G
1 G
10453489 TCTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCGTAT
Found at i:10453891 original size:159 final size:159
Alignment explanation
Indices: 10453462--10453902 Score: 424
Period size: 159 Copynumber: 2.8 Consensus size: 159
10453452 GAACCCGTAT
* * * * *
10453462 GCTTAGACATGGAATGAACTCCGTATGTCTAAGCCAACCCACGGAACGAGCCTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
* * * *
10453527 CCGGTCGGAGAGGCAAAATGCACAAGTCGAGGATCGACTTGGTCCCCCCCTACGTGCTGTCAATC
66 CCGGTCGGAGAGGCAAAATGCACAAGTCGAGGATCGGCTCGGTCCCCCCCTACATGCTGTCAAGC
** * *
10453592 CTACTAACGTAACCCTTGGTCCGGTCCAA
131 CTACTAACACAACCATTGGTCCGCTCCAA
* * * * * * * *
10453621 TCTTAGACTTGGAATGAACTCTGTATGCATAAGTCAACTCACGAAATGAGCGTGCGGGAGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
** * ** * * * * *
10453686 CCGGTCAAAGAGGCATAATGTGCAAGTCGAGAATCAGC-CTGGTCCCCCTCTGCATGCTG-CTAG
66 CCGGTCGGAGAGGCAAAATGCACAAGTCGAGGATCGGCTC-GGTCCCCCCCTACATGCTGTCAAG
* ** ***
10453749 CC-CCGTTGCCACAACCATTGGTCCGACT-GGG
130 CCTAC--TAACACAACCATTGGTCCG-CTCCAA
* *
10453780 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
* * * *
10453845 CCGATCGGAGAGGCAGAATGCACAAGTCGAGGATCGGCTCGAT-CCCCCCTACGTGCTG
66 CCGGTCGGAGAGGCAAAATGCACAAGTCGAGGATCGGCTCGGTCCCCCCCTACATGCTG
10453903 CCGATCTAGC
Statistics
Matches: 218, Mismatches: 59, Indels: 11
0.76 0.20 0.04
Matches are distributed among these distances:
157 1 0.00
158 16 0.07
159 199 0.91
160 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
CCGGTCGGAGAGGCAAAATGCACAAGTCGAGGATCGGCTCGGTCCCCCCCTACATGCTGTCAAGC
CTACTAACACAACCATTGGTCCGCTCCAA
Found at i:10453980 original size:26 final size:26
Alignment explanation
Indices: 10453941--10453991 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
10453931 GGTTCGATCA
10453941 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
10453967 TAGACTGAGG-ATGAACTTCGTATGC
1 TAGACTG-GGAATGAACTCCGTATGC
10453992 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:10454737 original size:159 final size:157
Alignment explanation
Indices: 10454309--10454735 Score: 423
Period size: 159 Copynumber: 2.7 Consensus size: 157
10454299 ACTCCGTATG
* * * *
10454309 CTTAGACATGGAATGAACTGCATATGCCAAAGCCAACCCACGAAACTAGTGTGTGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCAAAGCCAACCCATGAAACAAGTGTGCGGGCGCTCAGC
* * * * *
10454374 CGGTCGGAGAGGCAGAATGCGCTAGTTGGGGATCGGCCCGATCCCCC-TACGTTCTGTCGATCCT
66 C-GTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTTACATGCTGTCGATCCC
* *
10454438 GCTGCTACAACCCTTAATTCGATCTGAT
130 GCTGCCACAACCCTCAATTCGATCTGAT
** * * * * * *
10454466 CTTAGAC-TGGGAATGAACTCTGTATGTCGAAGTCAACCCATGAAACAAGTGTACAGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCATATGCCAAAGCCAACCCATGAAACAAGTGTGCGGGCGCTCAG
* ** * ** * * *
10454530 CCGATCGGAGAGGCATAATGCGCAAACCGGGGACCGATCCGGTCCCCCTTTGCATGCTGTCGGTC
65 CCG-TCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCC-TTACATGCTGTCGATC
**
10454595 CCGCTGCCACAACCCTCGGTTCGA-CTGGCA-
128 CCGCTGCCACAACCCTCAATTCGATCT-G-AT
* * ** * * *
10454625 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAAC
1 CTTAGACATGGAATGAACTCCATATGCCAAAGCCAACCCATGAAACAAGTGTGCGGGCGCTCAGC
10454690 CAGTCGGAGAGGCAGAATGCGCAAGTCGGGG-TCGGCCCGATCCCCC
66 C-GTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCC
10454736 CTGCGTGCTA
Statistics
Matches: 212, Mismatches: 50, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
156 2 0.01
157 87 0.41
158 13 0.06
159 107 0.50
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCATATGCCAAAGCCAACCCATGAAACAAGTGTGCGGGCGCTCAGC
CGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTTACATGCTGTCGATCCCG
CTGCCACAACCCTCAATTCGATCTGAT
Found at i:10454811 original size:26 final size:25
Alignment explanation
Indices: 10454782--10454833 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 25
10454772 CCGGTCTAAT
10454782 CTTAAAC-GGGTAATGAACTCCGTATG
1 CTTAAACTGGG-AATGAAC-CCGTATG
* *
10454808 CTTAGACTGGGGATGAACCCGTATG
1 CTTAAACTGGGAATGAACCCGTATG
10454833 C
1 C
10454834 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 8 0.35
26 12 0.52
27 3 0.13
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (25 bp):
CTTAAACTGGGAATGAACCCGTATG
Found at i:10455328 original size:26 final size:26
Alignment explanation
Indices: 10455292--10455344 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10455282 CCGATTCGAT
10455292 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
* *
10455318 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
10455344 C
1 C
10455345 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:10455540 original size:26 final size:26
Alignment explanation
Indices: 10455489--10455541 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10455479 CCAGTCTGAT
*
10455489 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10455515 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
10455541 C
1 C
10455542 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10455605 original size:197 final size:198
Alignment explanation
Indices: 10455251--10455646 Score: 516
Period size: 197 Copynumber: 2.0 Consensus size: 198
10455241 CCCCCCTGCG
* * *
10455251 TGCTGCCGATCCTGCTGCCGTAACCCTCGGTCCGATTCGATCTTAGACTGGGAATGAACCCCGTA
1 TGCTGCCGATCCTACTGCCGTAACCCTCGGTCCGAGTCGATCTTAGACTGGGAATGAACCCCATA
* * * *
10455316 TGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGTGTGCGGGTGCTCA
66 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGCGCTCA
* * * * *
10455381 GTCGGCCAGAGAGGTATAATGCGCAAGCC-GAGGATCGGA-CCGGT-CCCCCCTTACATGCTGTC
131 GTCGACCAGAGAGGCAGAATACGCAAGCCAG-GGATC-GATCCGGTACCCCCCCTACATGCTGTC
10455443 GATCC
194 GATCC
* * * *
10455448 TGCTGCTGGTCCTACTGCCGTAACCCTCGGTCC-AGTCTGATCTTAGACTGGGAATGAACTCTAT
1 TGCTGCCGATCCTACTGCCGTAACCCTCGGTCCGAGTC-GATCTTAGACTGGGAATGAACCCCAT
*
10455512 ATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCT
65 ATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGCGCT
* * * *
10455576 CAG-CTGATCAGAGGGGCAGAATACGCAAGCCAGGGATCGATCCGGTACCCCCCCTGCCTGCTGT
129 CAGTC-GACCAGAGAGGCAGAATACGCAAGCCAGGGATCGATCCGGTACCCCCCCTACATGCTGT
10455640 CGATCC
193 CGATCC
10455646 T
1 T
10455647 ATTACCGCAA
Statistics
Matches: 172, Mismatches: 21, Indels: 11
0.84 0.10 0.05
Matches are distributed among these distances:
196 6 0.03
197 143 0.83
198 23 0.13
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (198 bp):
TGCTGCCGATCCTACTGCCGTAACCCTCGGTCCGAGTCGATCTTAGACTGGGAATGAACCCCATA
TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGCGCTCA
GTCGACCAGAGAGGCAGAATACGCAAGCCAGGGATCGATCCGGTACCCCCCCTACATGCTGTCGA
TCC
Found at i:10456020 original size:158 final size:159
Alignment explanation
Indices: 10455835--10456121 Score: 355
Period size: 158 Copynumber: 1.8 Consensus size: 159
10455825 CGGCTGGGGC
* * * * **
10455835 TTAGACATGGAATGAACTCCCTATGCCTAAGCCGACAAATGAAACGGGCGTACGGGTGCTCAACC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACAAACGAAACGAGAGTACGGGCACTCAACC
* * *
10455900 GGTCGGAGAGGCAGAATGCGCAAG-TCGGGGATCGACCTGATCCCCC-CTACATGCTACCGATCC
66 GGTCAGAGAGCCAGAATGCGCAAGCT-GGGGATCGACCCGATCCCCCTCTACATGCTACCGATCC
10455963 TGCTGCCGCAACCCTCGGTCCGATCTATTA
130 TGCTGCCGCAACCCTCGGTCCGATCTATTA
* * ** ** *
10455993 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGTGGGCACTCAGC
1 TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACAAACGAAACGAGAGTACGGGCACTCAAC
* * * *
10456057 CGGTCAGAGAGCCATAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTACATGCTGCCGATCC
65 CGGTCAGAGAGCCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTACATGCTACCGATCC
10456122 CGTTACCGGT
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
157 1 0.01
158 88 0.83
159 17 0.16
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (159 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACAAACGAAACGAGAGTACGGGCACTCAACC
GGTCAGAGAGCCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTACATGCTACCGATCCT
GCTGCCGCAACCCTCGGTCCGATCTATTA
Found at i:10456262 original size:329 final size:316
Alignment explanation
Indices: 10455514--10456295 Score: 786
Period size: 329 Copynumber: 2.4 Consensus size: 316
10455504 AACTCTATAT
10455514 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * ** * * * **
10455579 CTGATC-AGAGGGGCAGAATACGCAAGCCAGGGATCGATCCGGTACCCCCCCTGCCTGCTGTCGA
66 CTGATCGA-AGAGGCAGAATGCGCAAGCTGGGGATCGA-CCTG-ATCCCCCCTGCATGCTACCGA
* * **
10455643 TCCTATTACCGCAACCCTCGATCCGGTTAAATTTTAGACTGGGAATGAACTTTATATGCCTAAGT
128 TCCTACTACCGCAACCCTCGATCCGATT-AATTTTAGACTGGGAATGAACTCCATATGCCTAAGT
* * * *
10455708 CAACCCATGAAACGAGCGTTCGGGCACTGAGCCCACCAGAAAAGTATAATGCGCAAGTCAAGGAT
192 CAACCCACGAAACGAGAGTTCGGGCACTCAGCCCACCAGAAAAGCATAATGCGCAAGTCAAGGAT
* * * * *
10455773 CGACCCTATCCTCTTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCTGTTCGGCTGGG
257 CGACCCTACCCTCTTCTGCGTCCCGTCGGTCCCGCTGCCACAACCCTCGGTTCGGCTAGG
* * ** * * * * *
10455833 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCGACAAATGAAACGGGCGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * *
10455898 CCGGTCGGAGAGGCAGAATGCGCAAG-TCGGGGATCGACCTGATCCCCCCTACATGCTACCGATC
66 CTGATCGAAGAGGCAGAATGCGCAAGCT-GGGGATCGACCTGATCCCCCCTGCATGCTACCGATC
* * * *
10455962 CTGCTGCCGCAACCCTCGGTCCGATCT-ATTATTAGACTGGGAATGAACTCCGTATGCCTAAGTC
130 CTACTACCGCAACCCTCGATCCGAT-TAATT-TTAGACTGGGAATGAACTCCATATGCCTAAGTC
*** * **
10456026 AACCCACGAAACGAGAGTGT-GGGCACTCAGCCGGTCAG-AGAGCCATAATGCGCAAG-CTGGGG
193 AACCCACGAAACGAGAGT-TCGGGCACTCAGCCCACCAGAAAAG-CATAATGCGCAAGTC-AAGG
* * * *
10456088 ATCGGCCCGGTCCCCCTCTACATGCTGCCGATCCCGTTACCGGTCCTGTTGCCACAACCCTCGGT
255 ATCGACCC--T-ACCCTCT---T-CTG-CG-TCCCG-T--CGGTCCCGCTGCCACAACCCTCGGT
10456153 TCGGCTAGG
308 TCGGCTAGG
* * *
10456162 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGATCGTGCGCGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * **
10456227 CTAACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGA-CTCGGTCCCCCCTGCATGTTGTCGATC
66 CTGATCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCT-GATCCCCCCTGCATGCTACCGATC
10456291 CTACT
130 CTACT
10456296 GTTGGTCCTG
Statistics
Matches: 370, Mismatches: 72, Indels: 32
0.78 0.15 0.07
Matches are distributed among these distances:
316 7 0.02
317 119 0.32
318 5 0.01
319 85 0.23
320 5 0.01
323 1 0.00
324 3 0.01
325 2 0.01
326 3 0.01
327 1 0.00
328 2 0.01
329 136 0.37
330 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CTGATCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCTGATCCCCCCTGCATGCTACCGATCC
TACTACCGCAACCCTCGATCCGATTAATTTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAC
CCACGAAACGAGAGTTCGGGCACTCAGCCCACCAGAAAAGCATAATGCGCAAGTCAAGGATCGAC
CCTACCCTCTTCTGCGTCCCGTCGGTCCCGCTGCCACAACCCTCGGTTCGGCTAGG
Found at i:10456665 original size:196 final size:196
Alignment explanation
Indices: 10456162--10456718 Score: 642
Period size: 196 Copynumber: 2.8 Consensus size: 196
10456152 TTCGGCTAGG
* * * *
10456162 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGATCGTGCGCGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAA
** * * *
10456227 CTAACCGAAGAGGCAGAATGCGCAAG-CTGGGGATCGACTCGGTCCCCCCTGCATGTTGTCGATC
66 CCGATCGGAGAGGCAGAATGCGCAAGCCT-GGGATCGACTCGGTCCCCCCTGCATGCTGTCGATC
* * * * * *
10456291 CTACTGTTGGTCCTGCTGCTGCGACCATCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCTGT
130 CTGCTATTGGTCCTGCTGCAGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGT
10456356 AT
195 AT
* * * * *
10456358 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACAAGCGTGTGAGTGCTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAA
* * *
10456423 CCGATCGGAGAGGCAGAATACGCAAGCCTGGGA-CCAGCTCGGTCCCCCCTGCATGCTCTCGATC
66 CCGATCGGAGAGGCAGAATGCGCAAGCCTGGGATCGA-CTCGGTCCCCCCTGCATGCTGTCGATC
* *
10456487 CTGCTATTGGTCCTGCTGCAGCAACCCTCGTTTCGGT-TCGATCTTAGACTGGGAATGAACT-TC
130 CTGCTATTGGTCCTGCTGCAGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCT-
10456550 GTAT
193 GTAT
* * * * *
10456554 GCTTAGAAATGGAATGAACTCTGTAAGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTGAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAA
* * * ** *
10456619 CCGGTGGGAGAGGCAGAATGCACAAGCCTACGATCGAC-CTGGTCCCCCACTGCGTGCTGTCGAT
66 CCGATCGGAGAGGCAGAATGCGCAAGCCTGGGATCGACTC-GGTCCCCC-CTGCATGCTGTCGAT
* * *
10456683 CCTGTTGCTT-GTCCTGCTGCCA-CAACCCTCAGTCCG
129 CCTGCT-ATTGGTCCTGCTG-CAGCAACCCTCGGTCCG
10456719 ACTGGGGCTT
Statistics
Matches: 303, Mismatches: 49, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
195 5 0.02
196 252 0.83
197 42 0.14
198 4 0.01
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAA
CCGATCGGAGAGGCAGAATGCGCAAGCCTGGGATCGACTCGGTCCCCCCTGCATGCTGTCGATCC
TGCTATTGGTCCTGCTGCAGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTA
T
Found at i:10456848 original size:171 final size:171
Alignment explanation
Indices: 10456554--10456883 Score: 419
Period size: 171 Copynumber: 1.9 Consensus size: 171
10456544 AACTTCGTAT
* * ** *
10456554 GCTTAGAAATGGAATGAACTCTGTAAGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTGAA
1 GCTTAGAAATGGAATAAACTCTGTAAGCCTAAGCCAACCCACGAAACGAGCGTACGAACGCTCAA
* * * *
10456619 CCGGTGGGAGAGGCAGAATGCACAAGCCTACGATCGACCTGGTCCCCCACTGCGTGCTGTCGATC
66 CCGGTCGGAGAGGCAGAATGCACAAGCCGACGATCGACCCGGTCCCCCACTCCGTGCTGTCGATC
* * *
10456684 CTGTTGCTTGTCCTGCTGCCACAACCCTCAGTCCGACTGGG
131 CTGCTGCTGGTCCTACTGCCACAACCCTCAGTCCGACTGGG
* * * * *
10456725 GCTTAGACATGGAATAAACT-TCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAATGCTCA
1 GCTTAGAAATGGAATAAACTCT-GTAAGCCTAAGCCAACCCACGAAACGAGCGTACGAACGCTCA
** * ** * *
10456789 GTCGGTCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCCTCCGTGCTGTCGAT
65 ACCGGTCGGAGAGGCAGAATGCACAAGCCGACGATCGACCCGGTCCCCCACTCCGTGCTGTCGAT
*
10456854 CCTGCTGCTGGTCCTACTGCCACAAGCCTC
130 CCTGCTGCTGGTCCTACTGCCACAACCCTC
10456884 GATCTGGTCC
Statistics
Matches: 133, Mismatches: 25, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
170 1 0.01
171 132 0.99
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (171 bp):
GCTTAGAAATGGAATAAACTCTGTAAGCCTAAGCCAACCCACGAAACGAGCGTACGAACGCTCAA
CCGGTCGGAGAGGCAGAATGCACAAGCCGACGATCGACCCGGTCCCCCACTCCGTGCTGTCGATC
CTGCTGCTGGTCCTACTGCCACAACCCTCAGTCCGACTGGG
Found at i:10456903 original size:171 final size:171
Alignment explanation
Indices: 10456554--10456923 Score: 406
Period size: 171 Copynumber: 2.2 Consensus size: 171
10456544 AACTTCGTAT
* * * ** *
10456554 GCTTAGAAATGGAATGAAC-TCTGTAAGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACATGGAATGAACTTC-GTATGCCTAAGCCAACCCACGAAACGAGCGTACGAACGCTCA
* * * *
10456618 ACCGGTGGGAGAGGCAGAATGCACAAGCCTACGATCGACCTGGTCCCCCACTGCGTGCTGTCGAT
65 ACCGGTCGGAGAGGCAGAATGCACAAGCCGACGATCGACCCGGTCCCCCACTCCGTGCTGTCGAT
* * * * *
10456683 CCTGTTGCTTGTCCTGCTGCCACAACCCTCAGTCCGACTGGG
130 CCTGCTGCTGGTCCTACTGCCACAACCCTCAGTCCGACTCGA
* * * * *
10456725 GCTTAGACATGGAATAAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAATGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAACGCTCAA
* * ** * *
10456790 TCGGTCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCCTCCGTGCTGTCGATC
66 CCGGTCGGAGAGGCAGAATGCACAAGCCGACGATCGACCCGGTCCCCCACTCCGTGCTGTCGATC
* * *
10456855 CTGCTGCTGGTCCTACTGCCACAAGCCTC-GATCTG-GTCCGA
131 CTGCTGCTGGTCCTACTGCCACAACCCTCAG-TCCGACT-CGA
*
10456896 TCTTAGAC-TGGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTTCGTATGC
10456924 TTAGACATGG
Statistics
Matches: 164, Mismatches: 31, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
170 3 0.02
171 159 0.97
172 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (171 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAACGCTCAA
CCGGTCGGAGAGGCAGAATGCACAAGCCGACGATCGACCCGGTCCCCCACTCCGTGCTGTCGATC
CTGCTGCTGGTCCTACTGCCACAACCCTCAGTCCGACTCGA
Found at i:10457034 original size:368 final size:366
Alignment explanation
Indices: 10456358--10457053 Score: 919
Period size: 368 Copynumber: 1.9 Consensus size: 366
10456348 AACTCTGTAT
* * * * *
10456358 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACAAGCGTGTGAGTGCTCAA
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGAATGCTCAA
* * * *
10456423 CCGATCGGAGAGGCAGAATACGCAAGCCTGGGACCAGCTCGGTCCCCCCTGCATGCTCTCGATCC
66 CCGATCGGAGAGGCAGAATACACAAGCCGGGGACCAGCCCGGTCCCCCCTCCATGCTCTCGATCC
* * * *
10456488 TGCTATTGGTCCTGCTGCAGCAACCCTCGTTTCGGTTCGATCTTAGACTGGGAATGAACTTCGTA
131 TGCTACTGGTCCTACTGCAGCAACCCTCGTCTCGGTCCGATCTTAGACTGGGAATGAACTTCGTA
* * *
10456553 TGCTTAGAAATGGAATGAACTCTGTAAGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTGA
196 TGCTTAGAAATGGAATGAACTCCGTAAGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * * *
10456618 ACCGGTGGGAGAGGCAGAATGCACAAGCCTACGATCGACCTGGTCCCCCACTGCGTGCTGTCGAT
261 ACCGATCGGAGAGGCAGAATGCACAAGCCGACGACCAACCTGGTCCCCC-CTGCGTGCTGTCAAT
10456683 CCTGTTGCTTGTCCTGCTGCCACAACCCTCAGTCCGACTGGG
325 CCTGTTGCTTGTCCTGCTGCCACAACCCTCAGTCCGACTGGG
* ** *
10456725 GCTTAGACATGGAATAAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAATGCTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGAATGCTCAA
* * * * * * * *
10456790 TCGGTCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCCTCCGTGCTGTCGATC
66 CCGATCGGAGAGGCAGAATACACAAGCCGGGGACCAGCCCGGT-CCCCCCTCCATGCTCTCGATC
* *
10456855 CTGCTGCTGGTCCTACTGCCA-CAAGCCTCGATCT-GGTCCGATCTTAGACTGGGAATGAACTTC
130 CTGCTACTGGTCCTACTG-CAGCAACCCTCG-TCTCGGTCCGATCTTAGACTGGGAATGAACTTC
* ** *
10456918 GTATGCTTAGACATGGAATGAACTCCGTGTGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC
193 GTATGCTTAGAAATGGAATGAACTCCGTAAGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGC
** * * ** *
10456983 TCAGTCGATCGGAGAGGCAGAATGCGCAAGTCGGGGACCAACTTGGTCCCCCCTGCGTGCTGTCA
258 TCAACCGATCGGAGAGGCAGAATGCACAAGCCGACGACCAACCTGGTCCCCCCTGCGTGCTGTCA
10457048 ATCCTG
323 ATCCTG
10457054 CGTGCTGACT
Statistics
Matches: 279, Mismatches: 47, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
367 108 0.39
368 167 0.60
369 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (366 bp):
GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGAATGCTCAA
CCGATCGGAGAGGCAGAATACACAAGCCGGGGACCAGCCCGGTCCCCCCTCCATGCTCTCGATCC
TGCTACTGGTCCTACTGCAGCAACCCTCGTCTCGGTCCGATCTTAGACTGGGAATGAACTTCGTA
TGCTTAGAAATGGAATGAACTCCGTAAGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
ACCGATCGGAGAGGCAGAATGCACAAGCCGACGACCAACCTGGTCCCCCCTGCGTGCTGTCAATC
CTGTTGCTTGTCCTGCTGCCACAACCCTCAGTCCGACTGGG
Found at i:10457753 original size:159 final size:158
Alignment explanation
Indices: 10457400--10457891 Score: 433
Period size: 159 Copynumber: 3.1 Consensus size: 158
10457390 CTTTGTATGT
* * * *
10457400 TTAGACTGTGG-ATGAACTCTGTATGCCTAAGTCAAACCATGAAACGAGCGTGCGGACGCTCAGC
1 TTAGACTG-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * *
10457464 CGACCGAAGAGGCAGATTACGCAAGTCGGGGATCAGCCCGATCACCCCTGCGTGTTGTCGATCCT
65 CGACCGAAGAGGCAGATTACGCAAGCCGAGGATCAGCCCGATCACCCCTGCGTACTGCCGATCCC
** * * * * *
10457529 GCTGTCGTAACCCTCGGTCTGGTCCGATC
130 GCTACCATAACCCTCAGTCCGCTCCGAGC
* * *
10457558 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGAGCT
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* *
10457623 GACCGAAGAGGCATGA-TGCGCAAGCCGAGGATCGGCCCGATC-CCTCTCTGCGTACTGCCGATC
66 GACCGAAGAGGCA-GATTACGCAAGCCGAGGATCAGCCCGATCACC-C-CTGCGTACTGCCGATC
* *
10457686 CCGCTACCATAACCCTCAGTCCGACT-GGGGC
128 CCGCTACCATAACCCTCAGTCCG-CTCCGAGC
* * * *
10457717 TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGC
1 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * * * * **
10457781 CGGCTGGAGAGGCAGAATGCACAAGTCGTGGATC-GACCTGGTC-CCCCTGCATGCTATCGATCC
65 CGACCGAAGAGGCAGATTACGCAAGCCGAGGATCAG-CCCGATCACCCCTGCGTACTGCCGATCC
* * * * *
10457844 TGCTACCGTAACCTTCGGTCCAG-TCCGATC
129 CGCTACCATAACCCTCAGTCC-GCTCCGAGC
10457874 TTAGACTGGGAATGAACT
1 TTAGACTGGGAATGAACT
10457892 TCTTATGCTT
Statistics
Matches: 273, Mismatches: 50, Indels: 23
0.79 0.14 0.07
Matches are distributed among these distances:
156 2 0.01
157 52 0.19
158 96 0.35
159 121 0.44
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GACCGAAGAGGCAGATTACGCAAGCCGAGGATCAGCCCGATCACCCCTGCGTACTGCCGATCCCG
CTACCATAACCCTCAGTCCGCTCCGAGC
Found at i:10457924 original size:26 final size:26
Alignment explanation
Indices: 10457873--10457925 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10457863 CCAGTCCGAT
* *
10457873 CTTAGACTGGGAATGAACTTCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10457899 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
10457925 C
1 C
10457926 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10458544 original size:26 final size:27
Alignment explanation
Indices: 10458515--10458572 Score: 100
Period size: 26 Copynumber: 2.2 Consensus size: 27
10458505 CCGATCTGAT
10458515 CTTAGACTAGGAATGAACTCCGTATG-
1 CTTAGACTAGGAATGAACTCCGTATGC
*
10458541 CTTAGACTAGGGATGAACTCCGTATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
10458568 CTTAG
1 CTTAG
10458573 TCAACCCACG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 25 0.83
27 5 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (27 bp):
CTTAGACTAGGAATGAACTCCGTATGC
Found at i:10458683 original size:641 final size:642
Alignment explanation
Indices: 10457456--10458738 Score: 1722
Period size: 641 Copynumber: 2.0 Consensus size: 642
10457446 AGCGTGCGGA
* * * *
10457456 CGCTCAGCCGACCGAAGAGGCAGATTACGCAAGTCGGGGATCAGCCCGATCACCCCTGCGTGTTG
1 CGCTCAGCCGACCGAAGAGGCAGAATACGCAAGTCGAGGATCAGCCCGATCACCCCTGCATGCTG
** ** **
10457521 TCGATCCTGCTGTCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
66 TCGATCCTGCTACCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
* ** *
10457586 AAGTCAACCCACGAAACGAGCGTTCGGGCGCTGAGCTGACCGAAGAGGCATGATGCGCAAGCCGA
131 AAGTCAACCCACGAAACGAGCGTTCAGAAGCTGAGCTGACCGAAGAGGCATAATGCGCAAGCCGA
* * *
10457651 GGATCGGCCCGATCCCTCTCTGCGTACTGCCGATCCCGCTACCATAACCCTCAGTCCGACTGGGG
196 GGATCGACCCGATCCCTCTCTACGTACTGCCGATCCCGCTACCACAACCCTCAGTCCGACTGGGG
* *
10457716 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGC
261 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAAC
* * **
10457781 CGGCTGGAGAGGCAGAATGCACAAGTCGTGGATCGACCTGGTCCCCCTGCATGCTATCGATCCTG
326 CGACTGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCAGTCCCCCTGCATGCTATCGATCCTG
* * * * *
10457846 CTACCGTAACCTTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCTTATGCTTAGACTAGGG
391 CTACCGTAACCCTCGATCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGG
*
10457911 ATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCAAGCGAATGCTCAGCAGGCCGGAAAGG
456 ATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCAAGCGAACGCTCAGCAGGCCGGAAAGG
* * * * * *
10457976 TCGATCCGAGAGACATAATGCACAAGCCGGGGATTAGCCCGATCCCCTTTTACGTGCTACCGATC
521 CCGATCCGAGAGACATAATGCACAAGCCGAGGATCAGCCCAATCCCCCTCTACGTGCTACCGATC
* * *
10458041 CCGCTGCCGGTCTTGCTGCCACAACCCTCGATCCGGCTGGGGCTTA-ACATGGAATG
586 CCGCTGCCGGTCTTACAGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATG
* *
10458097 CGCTCAGCCGACC-ATAGAGGTAGAATGCGCAAGTCGAGGATCAGCCCGATC-CGCCCTGCATGC
1 CGCTCAGCCGACCGA-AGAGGCAGAATACGCAAGTCGAGGATCAGCCCGATCAC-CCCTGCATGC
10458160 TGTCGATCCTGCTACCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
64 TGTCGATCCTGCTACCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
10458225 CTAAGTCAACCCACGAAATGAGCGTTTAGAAGCTGAGTTGACCGGAGAGGCATAATGCGCAAGCT
129 CTAAGTCAACCCACGAAACGAGCGTTCAGAAGCTGAGCTGACCGAAGAGGCATAATGCGCAAGCC
* * * ** * * * *
10458290 GGGGATCGACCCGGTTCCC-CTTTACGTGTTGTCGGTCCCGTTACCACAACCCTC-GATCCTACT
194 GAGGATCGACCC-GATCCCTCTCTACGTACTGCCGATCCCGCTACCACAACCCTCAG-TCCGACT
*
10458353 GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCT
257 GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCT
* * ** * *
10458418 CAACCGATTGGAGAGGCTGAATGCGTAAGTCGGGGATCGACCCAGTCCCTCCTGCATGTTGTCGA
322 CAACCGACTGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCAGTCCC-CCTGCATGCTATCGA
** *
10458483 TCCTGCTGTCGTAACCCTCGATCC-GATCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGA
386 TCCTGCTACCGTAACCCTCGATCCAG-TCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGA
* * ** *
10458547 CTAGGGATGAACTCCGTATGCCTTAGTCAACCCACGAAACGAGCGTGCG-GCGCTCAGTC-GGCC
450 CTAGGGATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCAAGCGAACGCTCAG-CAGGCC
* * * * *
10458610 -GAAGAGGCCTA-CCGGAGAGGCATAATGCACAAGCCGATGATCAGCTCAATCCCCCTCTATGTG
514 GGAA-AGGCCGATCC-GAGAGACATAATGCACAAGCCGAGGATCAGCCCAATCCCCCTCTACGTG
** *
10458673 CTGTCGATCCCGCTGCCGGTCTTACAGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAAT
577 CTACCGATCCCGCTGCCGGTCTTACAGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAAT
10458738 G
642 G
10458739 AACTTCGTAT
Statistics
Matches: 555, Mismatches: 77, Indels: 19
0.85 0.12 0.03
Matches are distributed among these distances:
640 8 0.01
641 419 0.75
642 128 0.23
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (642 bp):
CGCTCAGCCGACCGAAGAGGCAGAATACGCAAGTCGAGGATCAGCCCGATCACCCCTGCATGCTG
TCGATCCTGCTACCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
AAGTCAACCCACGAAACGAGCGTTCAGAAGCTGAGCTGACCGAAGAGGCATAATGCGCAAGCCGA
GGATCGACCCGATCCCTCTCTACGTACTGCCGATCCCGCTACCACAACCCTCAGTCCGACTGGGG
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAAC
CGACTGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCAGTCCCCCTGCATGCTATCGATCCTG
CTACCGTAACCCTCGATCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGG
ATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCAAGCGAACGCTCAGCAGGCCGGAAAGG
CCGATCCGAGAGACATAATGCACAAGCCGAGGATCAGCCCAATCCCCCTCTACGTGCTACCGATC
CCGCTGCCGGTCTTACAGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATG
Found at i:10459276 original size:159 final size:158
Alignment explanation
Indices: 10458917--10459281 Score: 380
Period size: 158 Copynumber: 2.3 Consensus size: 158
10458907 AACTCCATAT
* * * * *
10458917 GCTTAGACATGGAATGAACT-CTGTATGCCTAAGCCAACCCACAAAATGAGCGTGTGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAATGAGCATGCGAGCACTCA
* *
10458981 GCCAACCAGAGAGACAGAATGCGCAAGCTGGGGACCGACCCGATCCCTCCTATGTGCTATCGATC
65 GCCAACCAGAGAGACAGAATGCGCAAGCTGAGGACCGACCCGATCCCCCCTATGTGCTATCGATC
** ** *
10459046 CTGCTACCGTAACCCTCAATCTGGTCTGA
130 CCACTACCACAACCCTCAATCCGGTCTGA
* * * * *
10459075 TCTTAGAC-TGGGAATGAACTCCATACGCCTAAGTCAACCCACGAAATGAGCATGCGAGCACTGA
1 GCTTAGACAT-GGAATGAACTCCTTATGCCTAAGCCAACCCACGAAATGAGCATGCGAGCACTCA
* * * * * * *
10459139 GCC-AGCAGGAGAGGCATAATGCGCAAGCCT-AGGATCGGCCCGATCCCCCTCTGTGTGCTGTCG
65 GCCAACCA-GAGAGACAGAATGCGCAAG-CTGAGGACCGACCCGATCCCCC-CTATGTGCTATCG
* * *
10459202 GTCCCACTACCACAACCCTCAGTCCGG-CTGGG
127 ATCCCACTACCACAACCCTCAATCCGGTCT-GA
* *
10459234 GCTTAGACATGGAATGAACTCCTTATTCCTAAGCCAAACCACGAAATG
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAATG
10459282 GGCGTGTGGG
Statistics
Matches: 167, Mismatches: 33, Indels: 13
0.78 0.15 0.06
Matches are distributed among these distances:
157 4 0.02
158 87 0.52
159 75 0.45
160 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.24, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAATGAGCATGCGAGCACTCAG
CCAACCAGAGAGACAGAATGCGCAAGCTGAGGACCGACCCGATCCCCCCTATGTGCTATCGATCC
CACTACCACAACCCTCAATCCGGTCTGA
Found at i:10459309 original size:159 final size:157
Alignment explanation
Indices: 10458917--10459319 Score: 393
Period size: 159 Copynumber: 2.5 Consensus size: 157
10458907 AACTCCATAT
*
10458917 GCTTAGACATGGAATGAACT-CTGTATGCCTAAGCCAACCCACAAAATGAGCGTGTGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTCA
* * *
10458981 GCCAACCA-GAGAGACAGAATGCGCAAGCTGGGGACCGACCCGATCCCTCCTATGTGCTATCGAT
65 GCC-A-CAGGAGAGGCAGAATGCGCAAGCTGAGGACCGACCCGATCCCCCCTATGTGCTATCGAT
** ** *
10459045 CCTGCTACCGTAACCCTCAATCTGGTCTGA
128 CCCACTACCACAACCCTCAATCCGGTCTGA
* * * * * * * * *
10459075 TCTTAGAC-TGGGAATGAACTCCATACGCCTAAGTCAACCCACGAAATGAGCATGCGAGCACTGA
1 GCTTAGACAT-GGAATGAACTCCTTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTCA
* * * * * *
10459139 GCCAGCAGGAGAGGCATAATGCGCAAGCCT-AGGATCGGCCCGATCCCCCTCTGTGTGCTGTCGG
65 GCCA-CAGGAGAGGCAGAATGCGCAAG-CTGAGGACCGACCCGATCCCCC-CTATGTGCTATCGA
* *
10459203 TCCCACTACCACAACCCTCAGTCCGG-CTGGG
127 TCCCACTACCACAACCCTCAATCCGGTCT-GA
* * * * *
10459234 GCTTAGACATGGAATGAACTCCTTATTCCTAAGCCAAACCACGAAATGGGCGTGTGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTCAG
* *
10459299 CCGACTGGAGACGCAGAATGC
66 CC-ACAGGAGAGGCAGAATGC
10459320 ATAAGTCAGA
Statistics
Matches: 193, Mismatches: 44, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
157 4 0.02
158 87 0.45
159 100 0.52
160 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTCAG
CCACAGGAGAGGCAGAATGCGCAAGCTGAGGACCGACCCGATCCCCCCTATGTGCTATCGATCCC
ACTACCACAACCCTCAATCCGGTCTGA
Found at i:10460376 original size:26 final size:26
Alignment explanation
Indices: 10460347--10460399 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10460337 CCGGTTCGAT
*
10460347 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
10460373 CTTAGACTGGGGATGAGCTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
10460399 C
1 C
10460400 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:10460766 original size:26 final size:26
Alignment explanation
Indices: 10460725--10460777 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10460715 CTGATCTAAT
10460725 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
10460751 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
10460777 C
1 C
10460778 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:10461487 original size:26 final size:26
Alignment explanation
Indices: 10461449--10461501 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10461439 GGCTCAAACT
10461449 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10461475 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10461501 C
1 C
10461502 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10461877 original size:158 final size:159
Alignment explanation
Indices: 10461475--10461867 Score: 461
Period size: 159 Copynumber: 2.5 Consensus size: 159
10461465 ACTCCGTATG
*
10461475 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*** * * *
10461540 CAACC-GAGAAGGTAGAATGCGCAAAATGGGGATCGGTCTGGTCCCCCTCTACGTGCTGCTGGTC
66 CAACCGGAG-AGGTAGAATGCGCAAAATGGGGATCAACCTGATCCCCCCCTACGTGCTGCTGATC
* * * * *
10461604 CCATTGCCACAACCTCCAGTCTGGTTGGAT
130 CCACTACCACAACCCCCAGTCTGATTCGAT
* *
10461634 CTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
10461699 CGATCGAAGAGGTAGAATGCG-TAAATCGGGGA-CAACCTCGATCCCCCCCTATGTGCTGTTGAT
66 CAACCGGAGAGGTAGAATGCGCAAAAT-GGGGATCAACCT-GATCCCCCCCTACGTGCTGCTGAT
** ** *
10461762 CCTGCTACCGTAACCCCCGGTCTGATTCGAT
129 CCCACTACCACAACCCCCAGTCTGATTCGAT
* * * * *
10461793 CTTAGATA-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGTTGAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
10461857 CAACCGGAGAG
66 CAACCGGAGAG
10461868 ACATAATGCG
Statistics
Matches: 196, Mismatches: 35, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
158 65 0.33
159 129 0.66
160 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CAACCGGAGAGGTAGAATGCGCAAAATGGGGATCAACCTGATCCCCCCCTACGTGCTGCTGATCC
CACTACCACAACCCCCAGTCTGATTCGAT
Found at i:10462711 original size:26 final size:26
Alignment explanation
Indices: 10462673--10462725 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10462663 GGCTTAAACT
10462673 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
10462699 CTTAGAC-ATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
10462725 C
1 C
10462726 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:10462886 original size:26 final size:26
Alignment explanation
Indices: 10462857--10462910 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
10462847 CCAGTTTGAT
10462857 CTTAGA-CTGGAAATGAACTCAGTATG
1 CTTAGATC-GGAAATGAACTCAGTATG
** *
10462883 CTTAGATCGGGGATGAACTCTGTATG
1 CTTAGATCGGAAATGAACTCAGTATG
10462909 CT
1 CT
10462911 CAAGTCAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATCGGAAATGAACTCAGTATG
Found at i:10463584 original size:26 final size:26
Alignment explanation
Indices: 10463555--10463607 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10463545 CCAATCCGAT
10463555 CTTAGACT-GGGAGTGAACTCCGTATG
1 CTTAGACTGGGGA-TGAACTCCGTATG
*
10463581 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
10463607 C
1 C
10463608 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:10464263 original size:159 final size:158
Alignment explanation
Indices: 10464100--10464467 Score: 357
Period size: 159 Copynumber: 2.3 Consensus size: 158
10464090 CCTACTATAG
* * *
10464100 CAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAAGTCAACCCACGAA
1 CAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTACATATGCTTAAGCCAACCCACGAA
* * * * *
10464165 A-TGAGCGTGCAGGTGCTGAACCGGCCGAAAAGGCATAATGCACAAGTC-GAGGATCGACCCGAT
66 ACAG-GCGAGCAGGAGCTGAACCGGCCGAAAAGGCAGAATGCACAAGCCAG-GGATCGACCCGAT
* ** ** *
10464228 CCCCCTCTGCGTGCTGTCTGTCCTGCTGCCA
129 CCCCCT-TACGTGCTACCAATCCTACTGCCA
* * ** * *
10464259 CAACCCTCGGTCCGA-CTGGGGCTTAGACAT-GGAATGAACTACCTATGCCTAAGCCAACCCACG
1 CAACCCTCGGTCTGATC-CGATCTTAGAC-TGGGAATGAACTACATATGCTTAAGCCAACCCACG
* * * * * * *** *
10464322 AAACAGGCGAGCGGGAGCTTAGCTGGTCGAAAAGGTAGAATGCACAAGCCAGGGATCGGGTCGGT
64 AAACAGGCGAGCAGGAGCTGAACCGGCCGAAAAGGCAGAATGCACAAGCCAGGGATCGACCCGAT
* * *
10464387 CCCTCTTACGTGCTACCAATCTTACTGCCG
129 CCCCCTTACGTGCTACCAATCCTACTGCCA
*
10464417 CAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTA
1 CAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTACATATGCTTA
10464468 GACTGGGGAT
Statistics
Matches: 164, Mismatches: 39, Indels: 13
0.76 0.18 0.06
Matches are distributed among these distances:
157 1 0.01
158 57 0.35
159 103 0.63
160 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (158 bp):
CAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTACATATGCTTAAGCCAACCCACGAA
ACAGGCGAGCAGGAGCTGAACCGGCCGAAAAGGCAGAATGCACAAGCCAGGGATCGACCCGATCC
CCCTTACGTGCTACCAATCCTACTGCCA
Found at i:10464474 original size:26 final size:26
Alignment explanation
Indices: 10464438--10464489 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
10464428 CTGATCCGAT
10464438 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
10464464 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10464490 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10464989 original size:159 final size:158
Alignment explanation
Indices: 10464627--10465060 Score: 410
Period size: 159 Copynumber: 2.7 Consensus size: 158
10464617 GCCTTGGTCT
* * ** *
10464627 GGTCTGATCTTAGACTACGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGCGGG
1 GGTCTGAGCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGG
* *
10464692 CGCTCAGCCGATCGAAGAGGCAGAATGCGCAAGCCGGGATTGACTCGGTCCCTCTCTGCGTGCTA
66 CGCTCAGCCGATCGAAGAGGCAGAATGCGCAAGCCGGGATAGACCCGGTCCCTCTCTGCGTGCTA
* ** * * *
10464757 TCGATCCTGCCATCGCAACCCTCGATCC
131 CCGATCCCACCACCACAACCCTCGATCA
** * * *
10464785 GGTCTGATTTTAAACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAACGTTCGGG
1 GGTCTGAGCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGG
* * * *
10464850 CGTTGAGCCGA-CTGGAGAGGCATAATGCGCAAGCCGCGGATCAG-CCCGGTCCC-CATCTGCGT
66 CGCTCAGCCGATC-GAAGAGGCAGAATGCGCAAGCCG-GGAT-AGACCCGGTCCCTC-TCTGCGT
* * ** *
10464912 GCTGCCGGTCCCATTACCACAACCCTCGGTCA
127 GCTACCGATCCCACCACCACAACCCTCGATCA
* * * * * **
10464944 GG-CTGGGGCTTAGACAT-GTAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCG
1 GGTCT-GAGCTTAAAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCG
* ** * * *
10465007 GGCGCTCAGCTGGCCTAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCC
64 GGCGCTCAGCCGATCGAAGAGGCAGAATGCGCAAGCC-GGGATAGACCCGGTCC
10465061 TCCCTGCATG
Statistics
Matches: 221, Mismatches: 46, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
157 1 0.00
158 91 0.41
159 125 0.57
160 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GGTCTGAGCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGG
CGCTCAGCCGATCGAAGAGGCAGAATGCGCAAGCCGGGATAGACCCGGTCCCTCTCTGCGTGCTA
CCGATCCCACCACCACAACCCTCGATCA
Found at i:10465036 original size:672 final size:673
Alignment explanation
Indices: 10463972--10465187 Score: 1674
Period size: 672 Copynumber: 1.8 Consensus size: 673
10463962 CTTACACATG
*
10463972 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCTGCCCGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCTGACCGAGA
* * *
10464037 GGCAGAATGCACAAGCCGGGGACCAGCTCGATCCCTTCCTGTGTGCTGTCGATCCTACTATAGCA
66 GGCAGAATGCACAAGCCGGGGACCAGCTCGATCCCTTCCTGCGTGCTATCGATCCTACCATAGCA
* * * * *
10464102 ACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAAGTCAACCCACGAAAT
131 ACCCTCGATCCGATCCGATCTTAAACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAAC
* * * *
10464167 GAGCGTGCAGGTGCTGAACCGGCCGAAAAGGCATAATGCACAAGTCGAGGATCGACCCGATCCCC
196 GAACGTGCAGGCGCTGAACCGACCGAAAAGGCATAATGCACAAGCCGAGGATCGACCCGATCCCC
* * * ** * *
10464232 CTCTGCGTGCTGTCTGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAA
261 ATCTGCGTGCTGCCGGTCCCACTACCACAACCCTCGGTCAGACTGGGGCTTAGACATGGAATGAA
* * *
10464297 CTACCTATGCCTAAGCCAACCCACGAAACAGGCGAGCGGGAGCTTAGCTGGTCGAAAAGGTAGAA
326 CTACCTATGCCTAAGCCAACCCACGAAACAGGCGAGCGGGAGCTCAGCTGGCCGAAAAGGCAGAA
*** * * * * *
10464362 TGCACAAGCCAGGGATCGGGTCGGTCC-CTCTTACGTGCTACCAATCTTACTGCCGCAACCCTCG
391 TGCACAAGCCAGGGATCGACCCGGTCCTC-CCTACATGCTACCAATCCTACTACCGCAACCCTCA
* * *
10464426 GT-CTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATG
455 GTCCAG-TCCGATCTTAGAATGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATG
*
10464490 GCTAAGTCAACCCATGAAACGAGCGTACGAGCACTTAGCCGACCGGAGAGGTAGAACGCGTAAGT
519 GCTAAGTCAACCCACGAAACGAGCGTACGAGCACTTAGCCGACCGGAGAGGTAGAACGCGTAAGT
10464555 CAGGGATCGACCCGATCCCTCCCTGCATACGACCGATCATGCTGCTGGTCCTGCTATCGCAAGCC
584 CAGGGATCGACCCGATCCCTCCCTGCATACGACCGATCATGCTGCTGGTCCTGCTATCGCAAGCC
10464620 TTGGTCTGGTCTGATCTTAGACTAC
649 TTGGTCTGGTCTGATCTTAGACTAC
* *
10464645 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAA-TGTGCGGGCGCTCAGCC-GATCGAA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-AAGCGTGCGGGCGCTCAGCCTGACCG-A
* ** * *
10464708 GAGGCAGAATGCGCAAGCC-GGGA-TTGACTCGGTCCC-TCTCTGCGTGCTATCGATCCTGCCAT
64 GAGGCAGAATGCACAAGCCGGGGACCAG-CTCGATCCCTTC-CTGCGTGCTATCGATCCTACCAT
* * * *
10464770 CGCAACCCTCGATCCGGTCTGATTTTAAACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACG
127 AGCAACCCTCGATCCGATCCGATCTTAAACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACG
* * * * * * * * * *
10464835 AAACGAACGTTCGGGCGTTGAGCCGACTGGAGAGGCATAATGCGCAAGCCGCGGATC-AGCCCGG
192 AAACGAACGTGCAGGCGCTGAACCGACCGAAAAGGCATAATGCACAAGCCGAGGATCGA-CCCGA
* * *
10464899 TCCCCATCTGCGTGCTGCCGGTCCCATTACCACAACCCTCGGTCAGGCTGGGGCTTAGACATGTA
256 TCCCCATCTGCGTGCTGCCGGTCCCACTACCACAACCCTCGGTCAGACTGGGGCTTAGACATGGA
* * * * * * *
10464964 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCTGGCCTAAGAGG
321 ATGAACTACCTATGCCTAAGCCAACCCACGAAACAGGCGAGCGGGAGCTCAGCTGGCCGAAAAGG
* ** *
10465029 CAGAATGCACAAGCCAGGGATCGACCCGGTCCTCCCTGCATGCTGTCAATCCTGCTACCGCAACC
386 CAGAATGCACAAGCCAGGGATCGACCCGGTCCTCCCTACATGCTACCAATCCTACTACCGCAACC
10465094 CTCAGTCCAGTCCGATCTTAGAATGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGT
451 CTCAGTCCAGTCCGATCTTAGAATGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGT
*
10465159 ATGGCTAAGTCAACCCACGAAATGAGCGT
516 ATGGCTAAGTCAACCCACGAAACGAGCGT
10465188 GCGGGCGCTC
Statistics
Matches: 465, Mismatches: 71, Indels: 15
0.84 0.13 0.03
Matches are distributed among these distances:
671 4 0.01
672 385 0.83
673 74 0.16
674 2 0.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (673 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCTGACCGAGA
GGCAGAATGCACAAGCCGGGGACCAGCTCGATCCCTTCCTGCGTGCTATCGATCCTACCATAGCA
ACCCTCGATCCGATCCGATCTTAAACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAAC
GAACGTGCAGGCGCTGAACCGACCGAAAAGGCATAATGCACAAGCCGAGGATCGACCCGATCCCC
ATCTGCGTGCTGCCGGTCCCACTACCACAACCCTCGGTCAGACTGGGGCTTAGACATGGAATGAA
CTACCTATGCCTAAGCCAACCCACGAAACAGGCGAGCGGGAGCTCAGCTGGCCGAAAAGGCAGAA
TGCACAAGCCAGGGATCGACCCGGTCCTCCCTACATGCTACCAATCCTACTACCGCAACCCTCAG
TCCAGTCCGATCTTAGAATGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGGC
TAAGTCAACCCACGAAACGAGCGTACGAGCACTTAGCCGACCGGAGAGGTAGAACGCGTAAGTCA
GGGATCGACCCGATCCCTCCCTGCATACGACCGATCATGCTGCTGGTCCTGCTATCGCAAGCCTT
GGTCTGGTCTGATCTTAGACTAC
Found at i:10465139 original size:26 final size:26
Alignment explanation
Indices: 10465110--10465161 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10465100 CCAGTCCGAT
10465110 CTTAGAAT-GGGAATGAACTCCATATG
1 CTTAGAATAGGG-ATGAACTCCATATG
* *
10465136 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGAATAGGGATGAACTCCATATG
10465162 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGAATAGGGATGAACTCCATATG
Found at i:10465679 original size:380 final size:380
Alignment explanation
Indices: 10465081--10465940 Score: 1062
Period size: 380 Copynumber: 2.3 Consensus size: 380
10465071 CTGTCAATCC
** *
10465081 TGCTACCGCAACCCTC-AGTCCAGTCCGATCTTAGAATGGGAATGAACTCCATATGCTTAGACTA
1 TGCTACCATAACCCTCGA-TCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTA
* ** ** * * * * *
10465145 GGGATGAACTCCGTATGGCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTTGATCAGAG
65 GGGATGAACTCCATATACCTAAGTCAACCCACGAAACAAGCATGCCGACGCTCAATCGATCAGAG
** * * * * *
10465210 AGGCTGGCTGGAAAGACATAACGCATAAGCCAGGGATCAGCCCAGTCCCCCTCTGTGTGCTGTCA
130 AGGCCAGCCGAAAAGACATAACGCACAAGCCAGGGATCAGCCCAGTCCCCCTCTGCGTGCTATCA
* * ** * ** *
10465275 ATCCAGCTACCGGTCCTGCTACCACAACCCGTGGTTCGGTTGGGGCTTAGACATGCAATGAACTC
195 ATCCAGCTACCAGTCCTACTACCACAACCCGCAGTCCGACTGGGGCTTAGACATGCAATGAACTA
* *
10465340 CGGATGCCTAAGCCAACCCATAAAACGAGCGTACGAACGCTTAGCTGATCGAAAAGGCAGAATGC
260 CGGATGCCTAAGCCAACCCATAAAACGAGCATACGAACGCTTAGCCGATCGAAAAGGCAGAATGC
* ** * *
10465405 GTAAGCCGGGGATCGACCTGATCCCCCCTGCATGCTATCGATCCTGCTGCTGGTCT
325 ATAAGCCGAAGATCGACCCGATCCCCCCTACATGCTATCGATCCTGCTGCTGGTCT
* * * * *
10465461 TGCTGCCATAACCCTCGATTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
1 TGCTACCATAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAG
* * *
10465526 GGATGATCTCCATATACCTAAGTCAACCCATGAAACAAGCATGCCGACGCTCAATCGGTCAGAGA
66 GGATGAACTCCATATACCTAAGTCAACCCACGAAACAAGCATGCCGACGCTCAATCGATCAGAGA
* * * ** * *
10465591 GGCCAGCCGAAAAGACATAACGTACAAGTCGGGGATCAGCCC-GATCCTTCTTTGCGTGCTATCG
131 GGCCAGCCGAAAAGACATAACGCACAAGCCAGGGATCAGCCCAG-TCCCCCTCTGCGTGCTATCA
*
10465655 ATCCCGCTACCAGTCCTACTACCACAACCCGCAGTCCGACTGGGGCTTAGACATGCAATGAACTA
195 ATCCAGCTACCAGTCCTACTACCACAACCCGCAGTCCGACTGGGGCTTAGACATGCAATGAACTA
* * * * *
10465720 CGGATGCCTAAGCCAACCCATGAAATGAGCATGCGAGCGCTTAGCCGGTCGAAAAGGCAGAATGC
260 CGGATGCCTAAGCCAACCCATAAAACGAGCATACGAACGCTTAGCCGATCGAAAAGGCAGAATGC
* * * * *
10465785 ATAAGCCGAAGATTGGCCCGATCCCTCCTACGTGCTGTCGATCCTGCTGCTGGTCT
325 ATAAGCCGAAGATCGACCCGATCCCCCCTACATGCTATCGATCCTGCTGCTGGTCT
*
10465841 TGCTACCGTAACCCTCGATCCAGTCCGATCTTAGACT-GGAATGAACTCCATATGCTTAGAC-AT
1 TGCTACCATAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTA-
* * * * *
10465904 GGAATGAACTCCGTATGCCTAAGCCAACACACGAAAC
65 GGGATGAACTCCATATACCTAAGTCAACCCACGAAAC
10465941 GAGTGTACGG
Statistics
Matches: 403, Mismatches: 74, Indels: 7
0.83 0.15 0.01
Matches are distributed among these distances:
379 54 0.13
380 348 0.86
381 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (380 bp):
TGCTACCATAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAG
GGATGAACTCCATATACCTAAGTCAACCCACGAAACAAGCATGCCGACGCTCAATCGATCAGAGA
GGCCAGCCGAAAAGACATAACGCACAAGCCAGGGATCAGCCCAGTCCCCCTCTGCGTGCTATCAA
TCCAGCTACCAGTCCTACTACCACAACCCGCAGTCCGACTGGGGCTTAGACATGCAATGAACTAC
GGATGCCTAAGCCAACCCATAAAACGAGCATACGAACGCTTAGCCGATCGAAAAGGCAGAATGCA
TAAGCCGAAGATCGACCCGATCCCCCCTACATGCTATCGATCCTGCTGCTGGTCT
Found at i:10465898 original size:25 final size:26
Alignment explanation
Indices: 10465870--10465921 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10465860 CCAGTCCGAT
10465870 CTTAGAC-TGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
*
10465895 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
10465921 C
1 C
10465922 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:10466257 original size:159 final size:157
Alignment explanation
Indices: 10465894--10466263 Score: 379
Period size: 158 Copynumber: 2.3 Consensus size: 157
10465884 AACTCCATAT
* ** *
10465894 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGTGTACGGGCACTCAA
1 GCTTAGACA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACAGGCACTCAA
* * * * *
10465959 CTGACCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCCTCGCGTACTGTCGATCT
65 CCGACCGAAGAGGCAGAATGCGCAAGCCAGGGAACGACCCGATCCCCCTCGCGTACTGTCGATCC
* * * *
10466024 TGCTGCCACAACCCTCGATCTGGTCCTA
130 CGCTACCACAACCCTCGATCTCGTACTA
* * * * * *
10466052 TCTTAGACTAGGAATGAACTTCGTATACCTATGTCAACCCACGAAACGAGCATACAGGCACTGAA
1 GCTTAGAC-AGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACAGGCACTCAA
* * * * * *
10466117 CCGATCGAAGAGGCATAATGCGCAAGTC-GAGGAACGGCCCGATCCCCCTCTGCGTGCTGTCGGT
65 CCGACCGAAGAGGCAGAATGCGCAAGCCAG-GGAACGACCCGATCCCCCTC-GCGTACTGTCGAT
*
10466181 CCCGCTACCTA-AACCCTCGATC-CG-ACTGGG
128 CCCGCTACC-ACAACCCTCGATCTCGTACT--A
* * *
10466211 GCTTAGACACGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCAT
1 GCTTAGACA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCAT
10466264 GCGGGTGCTC
Statistics
Matches: 171, Mismatches: 34, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.02
158 95 0.56
159 72 0.42
160 1 0.01
ACGTcount: A:0.27, C:0.31, G:0.24, T:0.18
Consensus pattern (157 bp):
GCTTAGACAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACAGGCACTCAAC
CGACCGAAGAGGCAGAATGCGCAAGCCAGGGAACGACCCGATCCCCCTCGCGTACTGTCGATCCC
GCTACCACAACCCTCGATCTCGTACTA
Found at i:10466596 original size:26 final size:26
Alignment explanation
Indices: 10466567--10466619 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10466557 CCGGTCCGAT
10466567 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
10466593 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10466619 C
1 C
10466620 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10467818 original size:26 final size:26
Alignment explanation
Indices: 10467782--10467834 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10467772 GGCTCAAACT
10467782 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10467808 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10467834 C
1 C
10467835 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10468131 original size:159 final size:160
Alignment explanation
Indices: 10467808--10468145 Score: 351
Period size: 159 Copynumber: 2.1 Consensus size: 160
10467798 ACTCCGTATG
* * *
10467808 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAGT
* * * * * * *** **
10467873 CGGTCGGAGAGGTAGAATGCACAAGTCGAGGATTGGCCCGATCCCCTTCAACGTGCTGTTGGTCC
66 CGATCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCTCCAACATGCTACCGACCC
* * * * * * *
10467938 TGCTGCCACAACCCTGGGTCTGGCTGGGGT
131 TACTGCCACAACCCTCGATCTCGATGCGAT
* * *
10467968 -TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCACAAAACGGGGGTACGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAGT
* * * **
10468032 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCC-CCTGCATGCTACCGACCC
66 CGATCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCTCCAACATGCTACCGACCC
* *
10468096 TACTGCCACAGCCCCTCGATC-CGATTCGAT
131 TACTGCCACA-ACCCTCGATCTCGATGCGAT
10468126 CTTAGAC-TGGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
10468146 TGTATGCTTA
Statistics
Matches: 144, Mismatches: 31, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
158 23 0.16
159 121 0.84
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (160 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAGT
CGATCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCTCCAACATGCTACCGACCC
TACTGCCACAACCCTCGATCTCGATGCGAT
Found at i:10468162 original size:26 final size:26
Alignment explanation
Indices: 10468126--10468178 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10468116 CCGATTCGAT
*
10468126 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10468152 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10468178 C
1 C
10468179 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10468361 original size:26 final size:26
Alignment explanation
Indices: 10468324--10468374 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
10468314 TGGTTCGATC
10468324 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
10468350 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
10468375 CCTAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:10468491 original size:197 final size:196
Alignment explanation
Indices: 10468120--10468630 Score: 679
Period size: 197 Copynumber: 2.6 Consensus size: 196
10468110 CTCGATCCGA
*
10468120 TTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAG
1 TTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAG
* * *
10468184 TCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACTAGAGAGGTAGAATGCGTAAGCTGAGGA
65 CCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGTAGAATGCATAAGCTGAGGA
** ** * * *
10468249 TCGACCCAGTCCCATCCTGTGTGCTGTCGATCGTGCTGCTGGTCCTGCTACCGCAAGCCTCGGTC
130 TCGACCCAGTCCCATCCTGCATGCTACCGATCCTACTGCTGGTCCTGCTACCGCAAACCTCGGTC
10468314 TGG
195 T-G
* *
10468317 TTCGATCTTAGACTGGGAATGAACTCCGTATGTTTAGACATGGAATGAACTCCGTATGCCTAAGC
1 TTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * * * * *
10468382 CAACCCATAAAACGAGCGTACGGGTGCTCAGTCGACCAGACAGGTAGAATGCATAAGCTGGGGAT
66 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGTAGAATGCATAAGCTGAGGAT
* * * * *
10468447 CGGCTC-GATCCC-TCTCTGCATGCTACCGATCCTAC-GATTGGTCCTGCTACCGTAAACCTCGT
131 CGACCCAG-TCCCATC-CTGCATGCTACCGATCCTACTG-CTGGTCCTGCTACCGCAAACCTCGG
10468509 TCTG
193 TCTG
*
10468513 CTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAG
1 TTC-GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAG
* * * *
10468578 CTAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAGGCAGAATGC
65 CCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGTAGAATGC
10468631 GCAAGTCGGG
Statistics
Matches: 273, Mismatches: 36, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
196 7 0.03
197 265 0.97
198 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (196 bp):
TTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGTAGAATGCATAAGCTGAGGAT
CGACCCAGTCCCATCCTGCATGCTACCGATCCTACTGCTGGTCCTGCTACCGCAAACCTCGGTCT
G
Found at i:10468550 original size:26 final size:26
Alignment explanation
Indices: 10468513--10468572 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
10468503 CCTCGTTCTG
10468513 CTCTG-AT-CTTAGAC-TGGGAATGAA
1 CTCTGTATGCTTAGACAT-GGAATGAA
10468537 CTCTGTATGCTTAGACATGGAATGAA
1 CTCTGTATGCTTAGACATGGAATGAA
*
10468563 CTCCGTATGC
1 CTCTGTATGC
10468573 CTAAGCTAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 24 0.75
27 1 0.03
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (26 bp):
CTCTGTATGCTTAGACATGGAATGAA
Found at i:10468935 original size:160 final size:158
Alignment explanation
Indices: 10468545--10468947 Score: 384
Period size: 160 Copynumber: 2.5 Consensus size: 158
10468535 AACTCTGTAT
* * *
10468545 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAA
* * ** ** *
10468610 CCGACCAGAGAGGCAGAATGCGCAAGTCGGGGACCGACCCAATCACCAATGCGTGCTGTCGATCC
66 CAGTCGGGAGAGGCAGAATGCGCAAGTCGGGGAAAGACCCAATCACCAATGCATGCTGTCGATCC
* * * *
10468675 TGCTGTAACAACCCTTGGTCCAGTTCGA
131 CGCTGCAACAACCCTTGGTCCAGCTAGA
* * * * * * * *
10468703 TCTTAGAC-TGGGAATGAACTCCGTATGCTTAAGTCAACACACAAAATGAGCGT-TCGGGTACTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGT-GGGTGCTC
* * * * ** *
10468766 AACCAGTCGGGGGAGGCATAATGCGCAAGTCGGGGATAAG-CCCGATCCCCCTTTGCATGTTGTC
64 AA-CAGTCGGGAGAGGCAGAATGCGCAAGTCGGGGA-AAGACCCAAT-CACCAATGCATGCTGTC
* * * * *
10468830 GGTCCCGCTGCCATAACCCTTGGTCCGGCTAGG
126 GATCCCGCTGCAACAACCCTTGGTCCAGCTAGA
*
10468863 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACGTGTGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGTGGGTGCTCA
*
10468927 ATCAGTC-GGAGAGGTAGAATG
65 A-CAGTCGGGAGAGGCAGAATG
10468948 TGTAAGCTGA
Statistics
Matches: 190, Mismatches: 47, Indels: 15
0.75 0.19 0.06
Matches are distributed among these distances:
157 1 0.01
158 51 0.27
159 44 0.23
160 92 0.48
161 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAA
CAGTCGGGAGAGGCAGAATGCGCAAGTCGGGGAAAGACCCAATCACCAATGCATGCTGTCGATCC
CGCTGCAACAACCCTTGGTCCAGCTAGA
Found at i:10469098 original size:26 final size:25
Alignment explanation
Indices: 10469022--10469100 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 25
10469012 CCGGTTCAAT
*
10469022 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGG-ATGAACTCCGTATG
10469048 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACT-GGGATGAACTCCGTATG
*
10469074 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACT-GGGATGAACTCCGTATG
10469100 C
1 C
10469101 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 46 0.94
27 3 0.06
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCCGTATG
Found at i:10469383 original size:185 final size:185
Alignment explanation
Indices: 10469048--10469436 Score: 478
Period size: 185 Copynumber: 2.1 Consensus size: 185
10469038 ACTCCATATG
* * * * *
10469048 CTTAGACTGGGGATGAACTCCGTATGCTTAGACTAGGGATGAACTCTGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAACGAACTCTGTATGCCTAAGCCAACCC
* * * * * *
10469113 ATGAAACGAGCGTACGGGCGCTCAGGCGATCGGAGAGGTAGAATGCGCAAGTCGGGGATCGACCC
66 ATGAAACGAGCGTACGGGCGCTCAGCCGACCGGAAAGGCAGAATGCGCAAGTCAGGGACCGACCC
* * * * * * **
10469178 GATCTCTCTCTGCGTGCTGTCGATCTTACTGTCC-CAACCTTCGGTCTGGTCCGAT
131 GATCTCCCCCTGCCTGCTGTCAATCTTACT-ACCGCAACCCTCGGTCCAGTCCGAT
*
10469233 CTTAGACTGAGAATGAACTCCATATGCTTAGAC-ATGGAACGAACTCTGTATGCCTAAGCCAACC
1 CTTAGACTGGGAATGAACTCCATATGCTTAGACTA-GGAACGAACTCTGTATGCCTAAGCCAACC
* * * *
10469297 CATGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAAAGGCAGAATGTGTAAGTCAGGGACCGACC
65 CATGAAACGAGCGTACGGGCGCTCAGCCGACCGGAAAGGCAGAATGCGCAAGTCAGGGACCGACC
* *
10469362 CGGTC-CCCACCTGCCTGCTGTCAATTTTACTACCGCAACCCTCGGTCCAGTCCGAT
130 CGATCTCCC-CCTGCCTGCTGTCAATCTTACTACCGCAACCCTCGGTCCAGTCCGAT
* *
10469418 CTTGGATTGGGAATGAACT
1 CTTAGACTGGGAATGAACT
10469437 TTGTATGCCT
Statistics
Matches: 172, Mismatches: 29, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
184 5 0.03
185 167 0.97
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (185 bp):
CTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAACGAACTCTGTATGCCTAAGCCAACCC
ATGAAACGAGCGTACGGGCGCTCAGCCGACCGGAAAGGCAGAATGCGCAAGTCAGGGACCGACCC
GATCTCCCCCTGCCTGCTGTCAATCTTACTACCGCAACCCTCGGTCCAGTCCGAT
Done.