Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 57 of 402
Found at i:10469771 original size:26 final size:26
Alignment explanation
Indices: 10469733--10469843 Score: 98
Period size: 26 Copynumber: 4.0 Consensus size: 26
10469723 CCAGTTTGAT
*
10469733 CTTAGAC-TGGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
10469759 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
* * *
10469785 CCTAAGCCAACCCACGAAATGAACTCCGTATG
1 -CTTAG---A--CATGGAATGAACTCCGTATG
* *
10469817 CTTAGACATGTAATGAACTCCCTATG
1 CTTAGACATGGAATGAACTCCGTATG
10469843 C
1 C
10469844 CTAAGCCAAC
Statistics
Matches: 70, Mismatches: 8, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
26 41 0.59
27 5 0.07
28 1 0.01
30 1 0.01
31 4 0.06
32 18 0.26
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10469777 original size:711 final size:718
Alignment explanation
Indices: 10468323--10469785 Score: 1662
Period size: 711 Copynumber: 2.0 Consensus size: 718
10468313 CTGGTTCGAT
*
10468323 CTTAGACTGGGAATGAACTCCGTATGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * *
10468388 ATAAAACGAGCGTACGGGTGCTCAGTCGACCAGACAGGTAGAATGCATAAGCTGGGGATCGGCTC
66 ATAAAACGAGCGTACGGGCGCTCAGGCGACCAGACAGGTAGAATGCACAAGCTGGGGATCGACCC
* * *
10468453 GATCCCTCTCTGCATGCTACCGATCCTACGATTGGTCCTGCTACCGTAAACCTCGTTCTGCTCTG
131 GATCCCTCTCTGCATGCTACCGATCCTAC-A-TGGTCC-GCAACCGT--A--TCGGTCTGCTCCG
* ** * *
10468518 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAAC
189 ATCTTAGACTGAGAATGAACTCCATATGCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAAC
* *
10468583 CCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAGGCAGAATGCGCAAGTCGGGGACCGAC
254 CCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAAAGGCAGAATGCGCAAGTCAGGGACCGAC
* * * ** * *
10468648 CCAATCACCAATGCGTGCTGTCGATCCTGCTGTAACAACCCTTGGTCCAGTTCGATCTTAGACTG
319 CCAATCACCAATGCCTGCTGTCAATCCTACTACAACAACCCTCGGTCCAGTCCGATCTTAGACTG
* * * * * *
10468713 GGAATGAACTCCGTATGCTTAAGTCAACACACAAAATGAGCGTTCGGGTACTGAACCAGTCGGGG
384 GGAATGAACTCCGTATGCCTAAGTCAACACACAAAACGAGCATTCAGGCACTGAACCAGTCGGGA
* * * * * *
10468778 GAGGCATAATGCGCAAGTCGGGGATAAGCCCGATCCCCCTTTGCATGTTGTCGGTCCCGCTGCCA
449 GAGGCATAATGCGCAAGACCGGGATAAGCCCGATCCCCCTCTGCATGCTGCCGGTCCCGCTACCA
* *
10468843 TAACCCTTGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
514 CAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* ** * * * ** * * *
10468908 ACGGACGTGTGGGTGCTCAATCAGTCGGAGAGGTAGAATGTGTAAGCTGAGGATTGGCCTGGTCT
579 ACGGACGTGCGGGCACTCAACCAGTCAGAGAGGCAGAATACGTAAGCTGAGGATCGGCCTGATCC
* * * * * ** *
10468973 CACTTGCGTGCTGCCGATCCTGCTGTCGCAACCCTCAGTCCGGTTCAATCTTAGACTGGGAATGA
644 CACTTACATGCTACCGATACTACTACCGCAACCCTCAGTCCAGTTCAATCTTAGACTGGGAATGA
10469038 ACTCCATATG
709 ACTCCATATG
* * * *
10469048 CTTAGACTGGGGATGAACTCCGTATGCTTAGAC-TAGGGATGAACTCTGTATGCCTAAGTCAACC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
10469112 CATGAAACGAGCGTACGGGCGCTCAGGCGATCGGAGAGGTAGAATGCGCAAG-TCGGGGATCGAC
65 CATAAAACGAGCGTACGGGCGCTCAGGCGACCAGACAGGTAGAATGCACAAGCT-GGGGATCGAC
* * ** * *
10469176 CCGATCTCTCTCTGCGTGCTGTCGATCTTAC-T-GTCC-CAACC-T-TCGGTCTGGTCCGATCTT
129 CCGATCCCTCTCTGCATGCTACCGATCCTACATGGTCCGCAACCGTATCGGTCTGCTCCGATCTT
* *
10469236 AGACTGAGAATGAACTCCATATGCTTAGACATGGAACGAACTCTGTATGCCTAAGCCAACCCATG
194 AGACTGAGAATGAACTCCATATGCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCACG
* * * * * **
10469301 AAACGAGCGTGCGGGTGCTCAGCCGACCGGAAAGGCAGAATGTGTAAGTCAGGGACCGACCCGGT
259 AAACGAGCGTGCGGGCGCTCAACCGACCAGAAAGGCAGAATGCGCAAGTCAGGGACCGACCCAAT
* * ** ** * *
10469366 CCCCACCTGCCTGCTGTCAATTTTACTACCGCAACCCTCGGTCCAGTCCGATCTTGGATTGGGAA
324 CACCA-ATGCCTGCTGTCAATCCTACTACAACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAA
** * **
10469431 TGAACTTTGTATGCCTAAGTCAACCCATGAAACGAGCATTCAGGCACT-AAGCC-GATC-GGAGA
388 TGAACTCCGTATGCCTAAGTCAACACACAAAACGAGCATTCAGGCACTGAA-CCAG-TCGGGAGA
** * * *
10469493 GGCATAATGCGCAA-ACCGGGATTGGCCTGGT-CCCCTCTGCGTGCTGCCGGTCCCGCTACCACA
451 GGCATAATGCGCAAGACCGGGATAAGCCCGATCCCCCTCTGCATGCTGCCGGTCCCGCTACCACA
10469556 ACCCTCGGTCCGG-TGAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
516 ACCCTCGGTCCGGCT-AGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * *
10469620 CGGGCGTGCGGGCACTGAGCCGGTCAGAGAGGCAGAATACGTAAG-TCGAGGATCGG-CTCGATC
580 CGGACGTGCGGGCACTCAACCAGTCAGAGAGGCAGAATACGTAAGCT-GAGGATCGGCCT-GATC
* * * * ** **
10469683 CCTCTTATATGCTATCGATACTACTACCGTAACCCTTGGTCCAGTTTGATCTTAGACTGGGAATG
643 CCACTTACATGCTACCGATACTACTACCGCAACCCTCAGTCCAGTTCAATCTTAGACTGGGAATG
* *
10469748 AACTTCGTATG
708 AACTCCATATG
10469759 CTTAGACAT-GGAATGAACTCCGTATGC
1 CTTAGAC-TGGGAATGAACTCCGTATGC
10469786 CTAAGCCAAC
Statistics
Matches: 616, Mismatches: 113, Indels: 32
0.81 0.15 0.04
Matches are distributed among these distances:
710 4 0.01
711 212 0.34
712 12 0.02
713 154 0.25
714 87 0.14
718 1 0.00
719 4 0.01
721 4 0.01
722 1 0.00
724 2 0.00
725 135 0.22
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.22
Consensus pattern (718 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ATAAAACGAGCGTACGGGCGCTCAGGCGACCAGACAGGTAGAATGCACAAGCTGGGGATCGACCC
GATCCCTCTCTGCATGCTACCGATCCTACATGGTCCGCAACCGTATCGGTCTGCTCCGATCTTAG
ACTGAGAATGAACTCCATATGCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCACGAA
ACGAGCGTGCGGGCGCTCAACCGACCAGAAAGGCAGAATGCGCAAGTCAGGGACCGACCCAATCA
CCAATGCCTGCTGTCAATCCTACTACAACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGTCAACACACAAAACGAGCATTCAGGCACTGAACCAGTCGGGAGAGGCAT
AATGCGCAAGACCGGGATAAGCCCGATCCCCCTCTGCATGCTGCCGGTCCCGCTACCACAACCCT
CGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACG
TGCGGGCACTCAACCAGTCAGAGAGGCAGAATACGTAAGCTGAGGATCGGCCTGATCCCACTTAC
ATGCTACCGATACTACTACCGCAACCCTCAGTCCAGTTCAATCTTAGACTGGGAATGAACTCCAT
ATG
Found at i:10469811 original size:32 final size:32
Alignment explanation
Indices: 10469770--10469861 Score: 106
Period size: 32 Copynumber: 3.1 Consensus size: 32
10469760 TTAGACATGG
10469770 AATGAACTCCGTATGCCTAAGCCAACCCACGA
1 AATGAACTCCGTATGCCTAAGCCAACCCACGA
* * *
10469802 AATGAACTCCGTATG-CTTAG---A--CATGT
1 AATGAACTCCGTATGCCTAAGCCAACCCACGA
*
10469828 AATGAACTCCCTATGCCTAAGCCAACCCACGA
1 AATGAACTCCGTATGCCTAAGCCAACCCACGA
10469860 AA
1 AA
10469862 CGTGTGTGCG
Statistics
Matches: 47, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
26 17 0.36
27 4 0.09
28 1 0.02
30 1 0.02
31 4 0.09
32 20 0.43
ACGTcount: A:0.35, C:0.30, G:0.15, T:0.20
Consensus pattern (32 bp):
AATGAACTCCGTATGCCTAAGCCAACCCACGA
Found at i:10469834 original size:58 final size:58
Alignment explanation
Indices: 10469744--10469861 Score: 209
Period size: 58 Copynumber: 2.0 Consensus size: 58
10469734 TTAGACTGGG
* *
10469744 AATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
1 AATGAACTCCGTATGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
*
10469802 AATGAACTCCGTATGCTTAGACATGTAATGAACTCCCTATGCCTAAGCCAACCCACGA
1 AATGAACTCCGTATGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
10469860 AA
1 AA
10469862 CGTGTGTGCG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.22
Consensus pattern (58 bp):
AATGAACTCCGTATGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
Found at i:10470002 original size:242 final size:242
Alignment explanation
Indices: 10469574--10470045 Score: 590
Period size: 242 Copynumber: 2.0 Consensus size: 242
10469564 TCCGGTGAGG
*
10469574 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTGAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
* * * * * * * * *
10469639 CCGGTCAGAGAGGCAGAATACGTAAGTCGAGGATCGGCTCGATCCCTCTTATATGCTATCGATAC
66 CCGGCCAGAGAGGCAGAATACGCAAGCCGAGGATCAGCTCGATCCCCCCTACATGCTACCAATAC
** * * *
10469704 TACTACCGTAACCCTTGGTCCAGTTTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACAT-
131 TACTACCACAACCCTCGGTCCAGTTCGATCTTAGACTGCGAATGAACTTCGTATGCTTAGAC-TG
10469768 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACTCCGTAT
195 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACTCCGTAT
* * *
10469816 GCTTAGACATGTAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGTGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
* ** * * *
10469881 CCGGCCGGAGAGGCAGAATGA-GCAAGCC-AGGGATCATTTCGGTCCCCCCTACGTGCTGCCAAT
66 CCGGCCAGAGAGGCAGAAT-ACGCAAGCCGA-GGATCAGCTCGATCCCCCCTACATGCTACCAAT
* * * * * * *
10469944 CCTGCTGCCACAACCCTCGGTCCGGTTCGATCTTAGGCTGCGATTGAACTTTGTATGCTTAGACT
129 ACTACTACCACAACCCTCGGTCCAGTTCGATCTTAGACTGCGAATGAACTTCGTATGCTTAGACT
* **
10470009 GGGGATGAACTCCGTATGCCTAAGTTAACCCACGAAA
194 GGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
10470046 CGAGCGTGCG
Statistics
Matches: 193, Mismatches: 34, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
241 2 0.01
242 190 0.98
243 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (242 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
CCGGCCAGAGAGGCAGAATACGCAAGCCGAGGATCAGCTCGATCCCCCCTACATGCTACCAATAC
TACTACCACAACCCTCGGTCCAGTTCGATCTTAGACTGCGAATGAACTTCGTATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACTCCGTAT
Found at i:10471141 original size:26 final size:26
Alignment explanation
Indices: 10471112--10471164 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10471102 CTAATCCGAT
*
10471112 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTACGTATG
10471138 CTTAGACATGGAATGAACTACGTATG
1 CTTAGACATGGAATGAACTACGTATG
10471164 C
1 C
10471165 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTACGTATG
Found at i:10472328 original size:26 final size:26
Alignment explanation
Indices: 10472290--10472342 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10472280 GGCTCAAACT
10472290 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10472316 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10472342 C
1 C
10472343 CTAAGCCTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10472668 original size:26 final size:26
Alignment explanation
Indices: 10472632--10472684 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10472622 CTGGTTTGAT
10472632 CTTAAACTAGGAATGAACTCAGTATG
1 CTTAAACTAGGAATGAACTCAGTATG
* * *
10472658 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCAGTATG
10472684 C
1 C
10472685 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCAGTATG
Found at i:10472857 original size:25 final size:26
Alignment explanation
Indices: 10472829--10472880 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10472819 CTGGTCCGAT
* *
10472829 CTTAGAC-GGGAATGAACTCCGTATG
1 CTTAGACAGAGAATAAACTCCGTATG
*
10472854 CTTAGACATAGAATAAACTCCGTATG
1 CTTAGACAGAGAATAAACTCCGTATG
10472880 C
1 C
10472881 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACAGAGAATAAACTCCGTATG
Found at i:10473158 original size:159 final size:159
Alignment explanation
Indices: 10472853--10473284 Score: 357
Period size: 159 Copynumber: 2.7 Consensus size: 159
10472843 AACTCCGTAT
* * * * * ** * *
10472853 GCTTAGACATAGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAA
** * * * * * * * ** * * * * *
10472918 CCGGCCGGAGAGGCAGAATGCGTAAGTCGGGGACCGGCCC-AGTCATCCTCTACATGCTGTCGAT
66 CCGATCGAAAAGACAGAATGCGCAAGCCGGGGATCGACCCGA-TCCCCCTCTACGTCCGGCCGGT
** ** *
10472982 CCTGCTACTGCAACCCTCGGTCCGGTCTGA-
130 CCCACTACCACAACCCTCGATCCGG-CTGAG
* * * * * * *
10473012 TCTTAGAC-TGGGAGTGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATACCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCA
* *
10473076 ACCGATCGAAAAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTCCGGCCGGT
65 ACCGATCGAAAAGACAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTCCGGCCGGT
*
10473141 CCCACTACCACAACCCTCGATCTGGCTGAG
130 CCCACTACCACAACCCTCGATCCGGCTGAG
* * * *
10473171 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGCGTACGGGCTCTCAA
1 GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAA
* * ** * **
10473236 CCGGTCGGAGCGACAGAATGCGCAAGTCGGGGATCGACTTGATCCCCCT
66 CCGATCGAAAAGACAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCT
10473285 ACATGCTGAT
Statistics
Matches: 214, Mismatches: 55, Indels: 8
0.77 0.20 0.03
Matches are distributed among these distances:
158 5 0.02
159 207 0.97
160 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAA
CCGATCGAAAAGACAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTCCGGCCGGTC
CCACTACCACAACCCTCGATCCGGCTGAG
Found at i:10473359 original size:26 final size:26
Alignment explanation
Indices: 10473330--10473380 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
10473320 TGATCCGATC
10473330 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
* *
10473356 TTAGACTGGGGATGAACTTCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
10473381 CTTAAGGCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:10473883 original size:159 final size:156
Alignment explanation
Indices: 10473498--10473884 Score: 377
Period size: 157 Copynumber: 2.4 Consensus size: 156
10473488 CCAGTCCTGT
* * *
10473498 TACCACAACTCTCGGTCTGACTAGGGCTTAGAAATGGAATGAACTCTATATGCCTAAGCCAACCC
1 TACCACAACCCTCGGTCTGACT-GGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCC
* *** * * *
10473563 ACGAAATGAGCGTGCGGGTGCTAAGCCGGTCGGAGAGGCAAAATACGTAAGTCGGGGACCGACCG
65 ACGAAATGAGCGTGCAGACACTAAGCCAGTCGGAGAGGCAAAATACGCAAGCCGGGGACCGACCG
* * *
10473628 GTCCCTCTTGCGTGCTGTAGATCCTAC
130 ATCCCCCTTGCGTGCTGTAGATCCCAC
* * ** * * * *
10473655 TACCGCAACCCTCAGTCTGATCTGATCTTAGAC-TAAGAATGAACTCCGTATGCCTAAGTCGACC
1 TACCACAACCCTCGGTCTGA-CTGGGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACC
* * * * * * * *
10473719 TACGAAATGAGTGTGCAGACACTGAA-CCATTCGGAGAGGCATAATGCGCAGGCCGGGGATCGGC
64 CACGAAATGAGCGTGCAGACACT-AAGCCAGTCGGAGAGGCAAAATACGCAAGCCGGGGA-CCGA
10473783 CCGATCCCCCTCTGCGTGCTGTCAG-TCCCAC
127 CCGATCCCCCT-TGCGTGCTGT-AGATCCCAC
* * *
10473814 TGCCATAACCCTCGGTCCT-ACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 TACCACAACCCTCGGT-CTGACT-GGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
10473878 CACGAAA
64 CACGAAA
10473885 CAGACGTGCG
Statistics
Matches: 181, Mismatches: 40, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
156 1 0.01
157 91 0.50
158 17 0.09
159 67 0.37
160 5 0.03
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (156 bp):
TACCACAACCCTCGGTCTGACTGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCA
CGAAATGAGCGTGCAGACACTAAGCCAGTCGGAGAGGCAAAATACGCAAGCCGGGGACCGACCGA
TCCCCCTTGCGTGCTGTAGATCCCAC
Found at i:10474034 original size:26 final size:26
Alignment explanation
Indices: 10473998--10474050 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10473988 CCTATCTGAT
10473998 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
10474024 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
10474050 C
1 C
10474051 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:10474757 original size:26 final size:26
Alignment explanation
Indices: 10474719--10474771 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10474709 GGCTCAAACT
10474719 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10474745 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10474771 C
1 C
10474772 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10475053 original size:197 final size:196
Alignment explanation
Indices: 10474718--10475071 Score: 496
Period size: 197 Copynumber: 1.8 Consensus size: 196
10474708 TGGCTCAAAC
*
10474718 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *** *
10474783 CATGAAACGAGCGTACGGGTGCTCTGCAGGCCGGAAAGGCAGAATGTGCAAGCCAGGGATCGACC
66 CAAGAAACGAGCGTACAGGCGCTCAGCAGACCGGAAAGGCAGAATCCACAAGCCAGGGACCGACC
*
10474848 CGATCCCCCCATGCATGCTGTCGATCCTGCTGCTGGTCCTACTACCATAACCTTCGATTCAGCCT
131 CGATCCCCCC-TGCATGCTGTCAATCCTGCTGCTGGTCCTACTACCATAACCTTCGATTCAGCCT
10474913 GA
195 GA
10474915 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * *
10474980 CAAGAAACGAGTGTGCAGGCGTTCAGCCA-ACCGGAGAGGTAGAATCCATAAGTC-GAGGACCGA
66 CAAGAAACGAGCGTACAGGCGCTCAG-CAGACCGGAAAGGCAGAATCCACAAGCCAG-GGACCGA
*
10475043 CCCGATCCCCCCTGCGTGCTGTCAATCCT
129 CCCGATCCCCCCTGCATGCTGTCAATCCT
10475072 ACTATCGCAA
Statistics
Matches: 136, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
196 16 0.12
197 118 0.87
198 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.21
Consensus pattern (196 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACC
CAAGAAACGAGCGTACAGGCGCTCAGCAGACCGGAAAGGCAGAATCCACAAGCCAGGGACCGACC
CGATCCCCCCTGCATGCTGTCAATCCTGCTGCTGGTCCTACTACCATAACCTTCGATTCAGCCTG
A
Found at i:10475436 original size:26 final size:26
Alignment explanation
Indices: 10475392--10475469 Score: 120
Period size: 26 Copynumber: 3.0 Consensus size: 26
10475382 CCAGTTCGAT
* * *
10475392 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
10475418 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
10475444 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCGTATG
10475470 ACTAAGTCAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:10475669 original size:184 final size:182
Alignment explanation
Indices: 10475418--10475911 Score: 580
Period size: 184 Copynumber: 2.7 Consensus size: 182
10475408 ACTCCGTATG
* * *
10475418 CTTAGACTGGGGATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGACTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAACTCCATATGCCTAAGTCAACCC
* * * *
10475483 ACGAAACGAGCTTACGGGTGCTCAACCGATCGGAGAGGCAGAATGCACAAGTCGGGGATCAGCTC
65 ACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCACAAG-CGGGGATC-GCTC
* * * * * * *
10475548 -GGTCCCCCCCGCATGCTG-CAGGTCCTGCTGCCGCAAGCCTCGGTCCGGTCCGAT
128 TGATCCCCCCCGCATGCTGTC-GATCCTCCTACCGCAACCCTCGATCCGATCCGAT
* * * * *
10475602 CTTAGACTGGGAATGAACTCCATATGCTAAGACATGGAATGAACTCCCTGTGCCTAAGCCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGAATGAACTCCATATGCCTAAGTCAACCC
* * *
10475667 ACGAAAC-AGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGGTC
65 ACGAAACGA-GCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCACAAG-CGGGGATCGCTC
* * *
10475731 TGATCCCCCCTGCGTGCTGTCGATCCTCCTACCGCAACCCTCGATCCGATCTGAT
128 TGATCCCCCCCGCATGCTGTCGATCCTCCTACCGCAACCCTCGATCCGATCCGAT
* **
10475786 CTTAGGCTGGGAATGAACTAGGTATGCTTAGACTGGAGATGAACTCCATATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGA-ATGAACTCCATATGCCTAAGTCAACCC
** * * * *
10475851 ATAAAATGAGCGTGCGGGCGCTCAACCGACCAGAGAGGCAGGATGCGCAAGCTGGGGATCG
65 ACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGC-GGGGATCG
10475912 AAAGGGTGGT
Statistics
Matches: 261, Mismatches: 42, Indels: 14
0.82 0.13 0.04
Matches are distributed among these distances:
183 9 0.03
184 249 0.95
185 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (182 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAATGAACTCCATATGCCTAAGTCAACCCA
CGAAACGAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGCGGGGATCGCTCTGA
TCCCCCCCGCATGCTGTCGATCCTCCTACCGCAACCCTCGATCCGATCCGAT
Found at i:10476545 original size:26 final size:26
Alignment explanation
Indices: 10476507--10476559 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10476497 GGCTCAAAAT
10476507 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10476533 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10476559 C
1 C
10476560 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10476890 original size:159 final size:157
Alignment explanation
Indices: 10476532--10476950 Score: 405
Period size: 159 Copynumber: 2.7 Consensus size: 157
10476522 AACTCCGTAT
* *
10476532 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG-AACTGAACGTGCGGGCGTTTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GAACGTGCGGGCGCTGA
* * * * * *
10476596 GCCGGTTGGAGAGGCAGAATACGTAAGTCGGGGATCGGCTCGACCCCCCTACGTGCTATCGATCT
65 GCCGGTCGAAGAGGCAGAATACGTAAGCCAGGGATCGGCTAGACCCCCCTACGTGCTATCGATCC
* * * *
10476661 TGCTATCATAAACCTCGATCTGATCCGA
130 CGCTACCACAAACCTCGATCGGATCCGA
** * * * *
10476689 TTTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAACGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTGA
* * * * *
10476753 GCCGGTCGAAGAGGCATAATGCGTAAGCCAGGGATTGGCCTAGTCCCCCTCTACGTGCTGTCGAT
65 GCCGGTCGAAGAGGCAGAATACGTAAGCCAGGGATCGG-CTAGACCCCC-CTACGTGCTATCGAT
* * * * *
10476818 CCCGC-AGCCACAACCCTCGGTCCGGCT-GGG
128 CCCGCTA-CCACAAACCTCGAT-CGGATCCGA
* ** * *
10476848 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTGAG
* * * * * *
10476913 TCGATCGGAGAGGAAGAATTCGTAAGCCGGGGATCGGC
66 CCGGTCGAAGAGGCAGAATACGTAAGCCAGGGATCGGC
10476951 AAGGTGCCCC
Statistics
Matches: 208, Mismatches: 47, Indels: 13
0.78 0.18 0.05
Matches are distributed among these distances:
156 1 0.00
157 81 0.39
158 13 0.06
159 109 0.52
160 4 0.02
ACGTcount: A:0.25, C:0.27, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTGAG
CCGGTCGAAGAGGCAGAATACGTAAGCCAGGGATCGGCTAGACCCCCCTACGTGCTATCGATCCC
GCTACCACAAACCTCGATCGGATCCGA
Found at i:10477048 original size:26 final size:26
Alignment explanation
Indices: 10477007--10477056 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
10476997 CCAGTCCAAT
*
10477007 CTTAGACTAGGAATGAGCTCCGTAAG
1 CTTAGACTAGGAATGAACTCCGTAAG
* *
10477033 CTTAGACTGGGCATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
10477057 TGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTAAG
Found at i:10477455 original size:138 final size:138
Alignment explanation
Indices: 10477190--10477456 Score: 320
Period size: 138 Copynumber: 1.9 Consensus size: 138
10477180 GCCGGTCCTG
* * *
10477190 CTGCCACAACCCTCGGTCCAACAGGGGTTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCAACAGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* ** * * * *
10477255 CACGAAACGGGCGTGTAGGCATTCAACCGACCGGAGAGGCAAAATGCGTAAGTCGAGGATCGGCT
66 CACGAAACGAGCGTACAGGCACTCAACCGACCAGAGAGGCAAAATGCGCAAGCCGAGGATCGGCT
10477320 CAGTCCCA
131 CAGTCCCA
** * *
10477328 CTGCCACAACCCTCGGTCCGGCTGGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCAACAGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
** * * *** *
10477393 CATTAAACGAGCGTACGGGCACTCAATCGGTTAGAGAGGCAGAATGCGCAAGCCG-GGAATCGGC
66 CACGAAACGAGCGTACAGGCACTCAACCGACCAGAGAGGCAAAATGCGCAAGCCGAGG-ATCGGC
10477457 CTGTCGCCCC
Statistics
Matches: 106, Mismatches: 22, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
137 2 0.02
138 104 0.98
ACGTcount: A:0.27, C:0.29, G:0.27, T:0.16
Consensus pattern (138 bp):
CTGCCACAACCCTCGGTCCAACAGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACGAGCGTACAGGCACTCAACCGACCAGAGAGGCAAAATGCGCAAGCCGAGGATCGGCT
CAGTCCCA
Found at i:10477839 original size:158 final size:156
Alignment explanation
Indices: 10477551--10478051 Score: 384
Period size: 158 Copynumber: 3.2 Consensus size: 156
10477541 ACTCCATATG
* * * * * ** * * * *
10477551 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACT-AGCGTACGGGGGCTCAG
1 CTTAGAC-TGGAATGAACTCCCTATGCCTAAACTAACCCAC-AAAATGAATGTGCGAGCGCTCAA
* * * * * ** * *
10477615 CCGACCGGAGAGGCAGAATGCGCAAGTC-AGGGACCAGCCTAGTCGCCCCTGCGTGCCATCGATC
64 CCGATCGAAGAGGCAGAATGCGTAAG-CGAGGGATCAACCCGGTCCCCCCTGCGTGCTATCGATC
*
10477679 CTGCTGTCGCAACCCTCGATCTGATCCGAT
128 CTGCTGCCGCAACCCTCGATCTG-TCCGAT
* * * * *
10477709 CTTAGACTGTGAATGAACTCCGC-ATGCCTAAGC-AACCCACGAAATGAATGTGCGAGTGCTGAG
1 CTTAGACTG-GAATGAACTCC-CTATGCCTAAACTAACCCACAAAATGAATGTGCGAGCGCTCAA
* * * * * * *
10477772 CCGGTTGGAGAGGCATAATGCGTAAGTCGA-GGATCGACCCGGTCCCCTTCTGCGTGCTATCGGT
64 CCGATCGAAGAGGCAGAATGCGTAAG-CGAGGGATCAACCCGGTCCCC-CCTGCGTGCTATCGAT
* * * * **
10477836 CCTGCTGCCACAACCCTCGATCCGGCTGGGG
127 CCTGCTGCCGCAACCCTCGATCTGTC-CGAT
* ** * *
10477867 CTTAGACATGGAATGAACTCCCTATGCCTAAACTAACCCATAAAATGGGTGTGCGGGCGTTCAAC
1 CTTAGAC-TGGAATGAACTCCCTATGCCTAAACTAACCCACAAAATGAATGTGCGAGCGCTCAAC
* * *
10477932 CGATCGAAGAGGCAGAATGCGTAAGCTAGGGATCAATCCGGTCCCCCCTGTGTGCTATCGATCCT
65 CGATCGAAGAGGCAGAATGCGTAAGCGAGGGATCAACCCGGTCCCCCCTGCGTGCTATCGATCCT
* *
10477997 GCTGCCGTAACCCTC-AGTCTGGTCTGAT
130 GCTGCCGCAACCCTCGA-TCT-GTCCGAT
* *
10478025 CTTAGATTGGGAATGAACTCCATATGC
1 CTTAGACT-GGAATGAACTCCCTATGC
10478052 TTAGACTAGG
Statistics
Matches: 270, Mismatches: 60, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 58 0.21
158 147 0.54
159 62 0.23
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTCCCTATGCCTAAACTAACCCACAAAATGAATGTGCGAGCGCTCAACC
GATCGAAGAGGCAGAATGCGTAAGCGAGGGATCAACCCGGTCCCCCCTGCGTGCTATCGATCCTG
CTGCCGCAACCCTCGATCTGTCCGAT
Found at i:10479247 original size:26 final size:26
Alignment explanation
Indices: 10479218--10479270 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10479208 CCGAATCAAT
10479218 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
* *
10479244 CTTAGATTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
10479270 C
1 C
10479271 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:10481657 original size:26 final size:26
Alignment explanation
Indices: 10481628--10481680 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10481618 TGAATCTGAT
*
10481628 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10481654 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10481680 C
1 C
10481681 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10482355 original size:26 final size:26
Alignment explanation
Indices: 10482326--10482378 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10482316 CCGGTCTGAT
10482326 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
10482352 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10482378 C
1 C
10482379 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10482680 original size:381 final size:381
Alignment explanation
Indices: 10481972--10482859 Score: 1134
Period size: 381 Copynumber: 2.3 Consensus size: 381
10481962 CGGCTGGGAA
* * * * * *
10481972 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGAGCGCTCAGTC
1 TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAATGAGCGTGTGGGCGCTCAGTC
* * * * * * *** * *
10482037 GACCAGAGAGGTAGAATGGAGAGGTATAATGCGCAAGCCAAGGATCAATTCGATCCGTCTCTGCA
66 GATCAGAGAGGTCGACTGGAGAGGCATAATACGCAAGCCGAGGATCAGCCCGATCCGCCTCTACA
* *
10482102 TGTTGCCAATCCCACTGTCGGTCTTGCTGCCATAACCCTCGGTCCAGCTAGGGCTTAGACATGGA
131 AGTTGCCAATCCCACTGTCGGTCTTGCTGCCATAACCCTCGGTCCAACTAGGGCTTAGACATGGA
* * ** * * *
10482167 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGTTCTTAGTCGACTGGAGAGG
196 ATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAACGTGCAGGCACTTAGCCGACCGAAGAGG
* * * * *
10482232 TAGAATGCGTAAGCCGGGGATCGGCCCGATCCTCGCTTGCGTGCTGTCAATCCTGCTCCTAGTCC
261 CAGAATGCGCAAGCCGGGGATCGACCCGATCCTCGCTTACGTGCTGCCAATCCTGCTCCTAGTCC
* ** * * *
10482297 TGCTAACGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
326 TGCTAACGCAACCCTCGGTCCAATCCGATCTTAGACTAGGAATCAACTCCGTATGC
* *
10482353 TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATAAAATGAGTGTGTGGGCGCTCAGTC
1 TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAATGAGCGTGTGGGCGCTCAGTC
* * * * * * *
10482418 GATCGGAGAGGCCGACTGGAAAGGCATAATACGCAAGCTGAGGATCAGCCCGGTCTGCCTCTATA
66 GATCAGAGAGGTCGACTGGAGAGGCATAATACGCAAGCCGAGGATCAGCCCGATCCGCCTCTACA
* * *
10482483 AGTTGTCGATCCCACTGTCGGTCTTGCTGCCATAACCCTCGGTCCAACTGGGGCTTAGACATGGA
131 AGTTGCCAATCCCACTGTCGGTCTTGCTGCCATAACCCTCGGTCCAACTAGGGCTTAGACATGGA
*
10482548 ATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTTAGCCGACCGAAGAGG
196 ATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAACGTGCAGGCACTTAGCCGACCGAAGAGG
* * * *
10482613 CAGAATGCGCAAGCCGGGGATCGACCCGATCCTC-CATTATGTGCTGCCGATCCTGCTGCTCGTC
261 CAGAATGCGCAAGCCGGGGATCGACCCGATCCTCGC-TTACGTGCTGCCAATCCTGCTCCTAGTC
*
10482677 CTGCTAGCGCAACCCTCGGTCCAATCCGATCTTAGACTAGGAATCAACTCCGTATGC
325 CTGCTAACGCAACCCTCGGTCCAATCCGATCTTAGACTAGGAATCAACTCCGTATGC
* * * * * **
10482734 TTAAAC-TAGGGATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGCGCTCAAC
1 TTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACAAAATGAGCGTGTGGGCGCTCAGT
* * * * *
10482798 CGATCAGAAAGGTCGACAGGAGAGGCACAATATGCAAGCCGAGGATCGGCCCGATCC-CCTCT
65 CGATCAGAGAGGTCGACTGGAGAGGCATAATACGCAAGCCGAGGATCAGCCCGATCCGCCTCT
10482860 TGCGTGCTGT
Statistics
Matches: 430, Mismatches: 75, Indels: 5
0.84 0.15 0.01
Matches are distributed among these distances:
380 7 0.02
381 423 0.98
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (381 bp):
TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAATGAGCGTGTGGGCGCTCAGTC
GATCAGAGAGGTCGACTGGAGAGGCATAATACGCAAGCCGAGGATCAGCCCGATCCGCCTCTACA
AGTTGCCAATCCCACTGTCGGTCTTGCTGCCATAACCCTCGGTCCAACTAGGGCTTAGACATGGA
ATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAACGTGCAGGCACTTAGCCGACCGAAGAGG
CAGAATGCGCAAGCCGGGGATCGACCCGATCCTCGCTTACGTGCTGCCAATCCTGCTCCTAGTCC
TGCTAACGCAACCCTCGGTCCAATCCGATCTTAGACTAGGAATCAACTCCGTATGC
Found at i:10482736 original size:26 final size:26
Alignment explanation
Indices: 10482707--10482759 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10482697 CCAATCCGAT
*
10482707 CTTAGACTAGGAATCAACTCCGTATG
1 CTTAAACTAGGAATCAACTCCGTATG
* * *
10482733 CTTAAACTAGGGATGAACTTCGTATG
1 CTTAAACTAGGAATCAACTCCGTATG
10482759 C
1 C
10482760 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAAACTAGGAATCAACTCCGTATG
Found at i:10483241 original size:158 final size:159
Alignment explanation
Indices: 10482953--10483276 Score: 368
Period size: 158 Copynumber: 2.1 Consensus size: 159
10482943 TTAGACATGT
* * ** * *
10482953 AATGAAC-TCTGTATGCCTAAGCCAACCCACGAAATGAGGGTACGGGCACTCAACCGATCGGAGA
1 AATGAACTTCTGTACGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAACCGACCAGAGA
* * * * * **
10483017 GGTAGAATGCACAATCCAGGGATCGGCTCAGCTCCCCCTGCATGCTATCGATCCTACTGTCGCAA
66 GGCAGAATGCACAAGCCAGCGATCGGCCCAGCTCCCCCTGCATGCTACCGATCCTACTACCGCAA
*
10483082 CCCTCGATCC-GATCCGATCTTGGACTGGG
131 CCCTCGATCCAG-TCCGATCTTAGACTGGG
* * * * *
10483111 AATGAACTTC-GTACGCCTAAGTCAACCCACGAAACGAGCATGCGGGTACTGAGCCGACCAGAGA
1 AATGAACTTCTGTACGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAACCGACCAGAGA
* * * * *
10483175 GGCAGAATGCGCAAGCCAGCGATCGGCCC-GATCCCCCCTGCGTGCTGCCGATCCTGCTACCGCA
66 GGCAGAATGCACAAGCCAGCGATCGGCCCAGCT-CCCCCTGCATGCTACCGATCCTACTACCGCA
**
10483239 ACCCTCGATCCAGTTTGATCTTAGACTGGG
130 ACCCTCGATCCAGTCCGATCTTAGACTGGG
10483269 AATGAACT
1 AATGAACT
10483277 CCATATGCTT
Statistics
Matches: 137, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
157 2 0.01
158 132 0.96
159 3 0.02
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (159 bp):
AATGAACTTCTGTACGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAACCGACCAGAGA
GGCAGAATGCACAAGCCAGCGATCGGCCCAGCTCCCCCTGCATGCTACCGATCCTACTACCGCAA
CCCTCGATCCAGTCCGATCTTAGACTGGG
Found at i:10483287 original size:26 final size:26
Alignment explanation
Indices: 10483258--10483310 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10483248 CCAGTTTGAT
*
10483258 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
* *
10483284 CTTAGACTGGGGATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
10483310 C
1 C
10483311 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:10483484 original size:26 final size:26
Alignment explanation
Indices: 10483455--10483507 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10483445 CCTGTCCGAT
10483455 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
10483481 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10483507 C
1 C
10483508 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10483567 original size:197 final size:197
Alignment explanation
Indices: 10483226--10483581 Score: 464
Period size: 197 Copynumber: 1.8 Consensus size: 197
10483216 GTGCTGCCGA
* **
10483226 TCCTGCTACCGCAACCCTCGATCCAGTTTGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
1 TCCTGCTACCGCAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
* * *** ***
10483291 TGGGGATCAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCATGCGGGCCCTCAATGGGTTTG
66 TGGGAATCAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCCCTCAACCAGCCGG
*
10483356 AGATGCAGAATGCGCAAG-CTAGGGATCGGTTCGGTCCCTTCCTGCGTGCTATTGATCCTACTGC
131 AGAGGCAGAATGCGCAAGCCT-GGGATCGGTTCGGTCCCTTCCTGCGTGCTATTGATCCTACTGC
10483420 TGG
195 TGG
* * * *
10483423 TCCTGCTACCGTAAGCCTCAATCCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
1 TCCTGCTACCGCAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
* * * * * * *
10483488 AT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTGAGCCAGCCG
66 -TGGGAATCAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCCCTCAACCAGCCG
*
10483552 GAGAGGCATAATGCGCAAGCCTGGGATCGG
130 GAGAGGCAGAATGCGCAAGCCTGGGATCGG
10483582 CCTGATCCCC
Statistics
Matches: 133, Mismatches: 24, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
197 130 0.98
198 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (197 bp):
TCCTGCTACCGCAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
TGGGAATCAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCCCTCAACCAGCCGG
AGAGGCAGAATGCGCAAGCCTGGGATCGGTTCGGTCCCTTCCTGCGTGCTATTGATCCTACTGCT
GG
Found at i:10483773 original size:159 final size:159
Alignment explanation
Indices: 10483484--10483898 Score: 431
Period size: 159 Copynumber: 2.6 Consensus size: 159
10483474 CCGTATGCTT
* * * * ** * * *
10483484 AGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTGAGCCAG
1 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGGGTGCTCAGCCGG
* * * * * * *
10483549 CCGGAGAGGCATAATGCGCAAGCCTGGGATCGGCCTGATCCCCCTCTACGTGCTGTCAATCCCGC
66 CTGGAGAGACAGAATGCACAAGCCGGGGATCGACCTGATCCCCCTCTACATGCTGTCAATCCCGC
*
10483614 TGCCACAACCCTC-GATCC-AGCTGGGGCTA
131 TGCCACAACCCTCAG-TCCGA-CTAGGGCTA
*
10483643 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGGGTGCTCAACCGG
1 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGGGTGCTCAGCCGG
* * * * **
10483708 CTGGAGAGACAGAATGCACGAA-TCGGGGATCGACTTGGTCCCCCTCTGCATGCTGTCTGTCCCG
66 CTGGAGAGACAGAATGCAC-AAGCCGGGGATCGACCTGATCCCCCTCTACATGCTGTCAATCCCG
* *
10483772 CTGCCATAACCCTCAGTCCGACTAGGGCTT
130 CTGCCACAACCCTCAGTCCGACTAGGGCTA
* * * * * * **
10483802 AGACACGGAATGAACTCCTTATTCCTAAGCTAACCCACAGAACAGGTATACGGGTGCTCAGCCGG
1 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGGGTGCTCAGCCGG
* ** * *
10483867 CTGAAGAGGTAAAATGCGCAAGCCGGGGATCG
66 CTGGAGAGACAGAATGCACAAGCCGGGGATCG
10483899 GGCCGATCCC
Statistics
Matches: 211, Mismatches: 41, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
158 2 0.01
159 205 0.97
160 4 0.02
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (159 bp):
AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGGGTGCTCAGCCGG
CTGGAGAGACAGAATGCACAAGCCGGGGATCGACCTGATCCCCCTCTACATGCTGTCAATCCCGC
TGCCACAACCCTCAGTCCGACTAGGGCTA
Found at i:10483993 original size:26 final size:26
Alignment explanation
Indices: 10483957--10484033 Score: 136
Period size: 26 Copynumber: 3.0 Consensus size: 26
10483947 CTAGTCCAAT
10483957 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
10483983 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* *
10484009 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTTCGTAT
10484034 ACCTAAGTTA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:10485268 original size:26 final size:26
Alignment explanation
Indices: 10485239--10485291 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10485229 CCGGTCCGAT
10485239 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
10485265 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10485291 C
1 C
10485292 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10485465 original size:197 final size:195
Alignment explanation
Indices: 10485041--10485544 Score: 579
Period size: 197 Copynumber: 2.6 Consensus size: 195
10485031 CGGTCCGTTT
* * *
10485041 CGATCTTAGACTGGGAATGAATTCCGTATGCTTAG--ATGGAGGATGAACTCCGCATGCCTAAGT
1 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGA--ATGAACTCCGTATGCCTAAGC
* ** * * ** *
10485104 CAACCCATGGAAC-AGCG-TGCAGTACTCAGCTAACCGAAGAGACAGAATGCGTAAGCTGGGGAC
64 CAACCCATGAAACGAGCGTTG-AGCGCTCAGCTAGCCGGAGAGACAGAATGCACAAGCCGGGGAC
*
10485167 TGCCCGGACCCCCCCTCCGTGCTGTCGATCCTACTGCTGGTCCAGCTACCGCAAGCCTCGATCCG
128 TGCCCGGACCCCCCCTCCATGCTGTCGATCCTACTGCTGGTCCAGCTACCGCAAGCCTCGATCCG
10485232 GTC
193 GTC
*
10485235 CGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
1 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* *
10485300 ACCCATGAAACGAGCGTATGAGCGCTCAGCTAGTCGGAGAGGCAGAATGCACAAGCCGGGGA-TC
66 ACCCATGAAACGAGCGT-TGAGCGCTCAGCTAGCCGGAGAGACAGAATGCACAAGCCGGGGACT-
* * ** * * * * * * * *
10485364 GACCCGGTCCTCCTTTTCATGCTGTTGATCCTCCTGTTGGTCTTA-CTGCCGTAAGCCTCGATCT
129 G-CCCGGACCCCCCCTCCATGCTGTCGATCCTACTGCTGGTC-CAGCTACCGCAAGCCTCGATCC
10485428 GGTC
192 GGTC
* *
10485432 CGATCTTAGACTGGGAATGAACTCCGAATGCTTAGACATGGAATGAACTCCGTATGCCTAATCCA
1 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
** * * * *
10485497 ACCCACAAAATGAACGTGTGAGCGTTCAGCCAGCCGGAGAGACAGAAT
66 ACCCATGAAACGAGCGT-TGAGCGCTCAGCTAGCCGGAGAGACAGAAT
10485545 TGCGTAAGTC
Statistics
Matches: 263, Mismatches: 39, Indels: 13
0.83 0.12 0.04
Matches are distributed among these distances:
194 64 0.24
195 5 0.02
196 39 0.15
197 154 0.59
198 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.22
Consensus pattern (195 bp):
CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
ACCCATGAAACGAGCGTTGAGCGCTCAGCTAGCCGGAGAGACAGAATGCACAAGCCGGGGACTGC
CCGGACCCCCCCTCCATGCTGTCGATCCTACTGCTGGTCCAGCTACCGCAAGCCTCGATCCGGTC
Found at i:10485466 original size:26 final size:26
Alignment explanation
Indices: 10485436--10485488 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10485426 CTGGTCCGAT
10485436 CTTAGAC-TGGGAATGAACTCCGAATG
1 CTTAGACAT-GGAATGAACTCCGAATG
*
10485462 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGAATG
10485488 C
1 C
10485489 CTAATCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGAATG
Found at i:10486145 original size:480 final size:491
Alignment explanation
Indices: 10485433--10486508 Score: 1213
Period size: 480 Copynumber: 2.2 Consensus size: 491
10485423 GATCTGGTCC
* * * *
10485433 GATCTTAGACTGGGAATGAACTCCGAATGCTTAGAC-ATGGAATGAACTCCGTATGCCTAA-TCC
1 GATCTTAGACTAGGAATGAACTCCGCATGCTTAGACTAAGG-ATAAACTCCGTATGCCTAAGT-C
* * * * * ** * * * * *
10485496 AACCCACAAAATGAACGTGTGAGCGTTCAGCCAGCCGGAGAGACAGAATTGCGTAAGTCAGGG-T
64 AACCCACGAAACGAGCGTGCGAGCGCTCAGCTGGTCGGAGAGGCAGAA-TGCGCAAGCCGGGGAT
** ** * * *
10485560 CCGGTCTGGT-CCCCCCTACGTGCTGTCAATCCTGCTATCGTAACCCTCAGTCCGGTCTGATCTT
128 -CGACCCAGTCCCCCCCTACGTGCTGTCAATCCTGCTATCGCAACCCTCAGCCCGGTCCGATCTT
* ** ** *
10485624 AGATTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTGCTGAGCCGA
192 AGACTAAGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCACTAAGCCGA
* *
10485689 CTGGAGAGGCATAATGCGCAAGCCAGAGATCGACTCGG-TC-CG-AC-T-G-C-C-A-C-AACCC
257 CCGGAGAGGCATAATGCGCAAGCCAGAGATCGACCCGGCTCGCGTACGTAGCCGCTACCAAACCC
*
10485744 TCGGTCCAGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGGGA
322 TCGATCCAGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGGGA
*
10485809 GTGCG-GACGCTCAGCTGGCC-GAAAAGGTAGAATACGTAAGCCGAGGATCGG-CCTGATCCC-C
387 GTGCGAG-CGCTCAGCCGGCCAG-AAAGGTAGAATACGTAAGCCGAGGATCGGTCC-GATCCCAC
* *
10485870 TCTGCATGCTGCCGATCCTGCTG-CTGCAACCCTTGGTCCAATCT
449 -CTGCATGCTGCCGATCCTGCTGTC-GCAACCCTCGATCCAATCT
* ** * *
10485914 GATCTTAGACTAGGAATGAAC-CC-CTATGCTTAGATTGGGGATGAACTCTGTATGCCTAAGTCA
1 GATCTTAGACTAGGAATGAACTCCGC-ATGCTTAGACTAAGGATAAACTCCGTATGCCTAAGTCA
* *
10485977 ACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
65 ACCCACGAAACGAGCGTGCGAGCGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
* * *
10486042 ACCCAGTCCCCCCCTGCGTGCTGTCAATCTTGCTATCGCAACCCTCGGCCCGGTCCGATCTTAGA
130 ACCCAGTCCCCCCCTACGTGCTGTCAATCCTGCTATCGCAACCCTCAGCCCGGTCCGATCTTAGA
* * *
10486107 CTAAGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCACTAAGCCGACCG
195 CTAAGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCACTAAGCCGACCG
** * * *
10486172 GAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCAGTCCCGCTAC
260 GAGAGGCATAATGCGCAAGCCAGAGATCGACCCGG-----CTC-GCGTAC-GT-AG--CCGCTAC
*
10486237 CATAACCCTCGATCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
315 CA-AACCCTCGATCCAGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* * * * * *
10486302 AAACGGGTGTGCGAGCGCTCAGCCGGTCAGAGAGGTAGAATGCGTAAGCCGGGGATCGGTCCGAT
379 AAAAGGGAGTGCGAGCGCTCAGCCGGCCAGAAAGGTAGAATACGTAAGCCGAGGATCGGTCCGAT
* * * **
10486367 CCCACCTGTATGCTGCCGATCCTGCTGTCGTAACCCTCGATTCGGTCT
444 CCCACCTGCATGCTGCCGATCCTGCTGTCGCAACCCTCGATCCAATCT
*
10486415 GATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTAAGGATAAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTAGGAATGAACTCCGCATGCTTAGACTAAGGATAAACTCCGTATGCCTAAGTCAA
*
10486480 CCCATGAAACGAGCGTGCGAGCGCTCAGC
66 CCCACGAAACGAGCGTGCGAGCGCTCAGC
10486509 AGGCCAGAGA
Statistics
Matches: 491, Mismatches: 71, Indels: 45
0.81 0.12 0.07
Matches are distributed among these distances:
479 16 0.03
480 204 0.42
481 23 0.05
486 2 0.00
488 2 0.00
489 1 0.00
491 1 0.00
493 1 0.00
496 1 0.00
497 1 0.00
498 1 0.00
499 1 0.00
501 168 0.34
502 68 0.14
503 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (491 bp):
GATCTTAGACTAGGAATGAACTCCGCATGCTTAGACTAAGGATAAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGAGCGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA
CCCAGTCCCCCCCTACGTGCTGTCAATCCTGCTATCGCAACCCTCAGCCCGGTCCGATCTTAGAC
TAAGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCACTAAGCCGACCGG
AGAGGCATAATGCGCAAGCCAGAGATCGACCCGGCTCGCGTACGTAGCCGCTACCAAACCCTCGA
TCCAGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAAGGGAGTGC
GAGCGCTCAGCCGGCCAGAAAGGTAGAATACGTAAGCCGAGGATCGGTCCGATCCCACCTGCATG
CTGCCGATCCTGCTGTCGCAACCCTCGATCCAATCT
Found at i:10486360 original size:159 final size:159
Alignment explanation
Indices: 10485954--10486369 Score: 465
Period size: 159 Copynumber: 2.6 Consensus size: 159
10485944 TAGATTGGGG
* * *
10485954 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGTCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGG
* * ** * *
10486019 CAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCCTGCGTGCTGTCAATCTTGCTATCGCAAC
66 CAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCTGCGTGCTGTCAATCCCGCTACCACAAC
* *
10486084 CCTCGGCCCGGTCCGATCTTAGACTAAGA
131 CCTCGACCCGGTCCGAGCTTAGACTAAGA
* * * * * * **
10486113 ATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCACTAAGCCGACCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGG
* * * * *
10486178 CATAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCAGTCCCGCTACCATAAC
66 CAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCTGCGTGCTGTCAATCCCGCTACCACAAC
* ** * *
10486243 CCTCGATCCGGTTGGGGCTTAGAC-ATGGA
131 CCTCGACCCGGTCCGAGCTTAGACTA-AGA
* * * * * *
10486272 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGAGCGCTCAGCCGGTCAGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGG
* * * *
10486337 TAGAATGCGTAAGCCGGGGATCGGTCCGATCCC
66 CAGAATGCGCAAGCCGGGGATCGGCCCGGTCCC
10486370 ACCTGTATGC
Statistics
Matches: 207, Mismatches: 49, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
158 1 0.00
159 206 1.00
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.19
Consensus pattern (159 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGG
CAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCTGCGTGCTGTCAATCCCGCTACCACAAC
CCTCGACCCGGTCCGAGCTTAGACTAAGA
Found at i:10486824 original size:26 final size:26
Alignment explanation
Indices: 10486786--10486838 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10486776 CCGATCCGAT
*
10486786 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAAGGAACTCCATATG
*
10486812 CTTAGACAT-GGAAGGAACTCCGTATG
1 CTTAGAC-TGGGAAGGAACTCCATATG
10486838 C
1 C
10486839 CTAAGCCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCATATG
Found at i:10486973 original size:184 final size:184
Alignment explanation
Indices: 10486627--10486989 Score: 440
Period size: 184 Copynumber: 2.0 Consensus size: 184
10486617 TCTGACTGGG
* * * *
10486627 GCTTAGACCTGGAATGAACTTCGTATACCTAAGCCAACCCATGAAACAAGCGTGCGAGCGCTCAA
1 GCTTAGACATGGAAGGAACTCCGTATACCTAAGCCAACCCACGAAACAAGCGTGCGAGCGCTCAA
* * * ** *
10486692 CCGGCCGTAAAGGCAAAATACGCAAGTCAGGGATCGGCCTGGTCCCCCCTGCATGCTGTTGATCC
66 CAGGCCGTAAAGGCAAAATACGCAAGCCAGGGATCGGCCTGATCCCCCCTGCATGCTGTCAACCC
** *
10486757 TGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
131 TGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
* * * * *
10486811 GCTTAGACATGGAAGGAACTCCGTATGCCTAAGCCAATCCACGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAAGGAACTCCGTATACCTAAGCCAACCCACGAAACAAGCGTGCGAGCGCTCAA
* * * * * * * *
10486876 CAGGCCAG-AGAGGCAGAATGCGTAAGCCTGGGATCGGTCTGATCCCTCCTGCGTGCTGTCAACC
66 CAGGCC-GTAAAGGCAAAATACGCAAGCCAGGGATCGGCCTGATCCCCCCTGCATGCTGTCAACC
* * * *
10486940 CTGCTACCGCAACCCTTGATCCGGTCTGATCTTAGATTGGGAATGAACTC
130 CTGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTC
10486990 TGTATTCCTA
Statistics
Matches: 148, Mismatches: 30, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
184 147 0.99
185 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAAGGAACTCCGTATACCTAAGCCAACCCACGAAACAAGCGTGCGAGCGCTCAA
CAGGCCGTAAAGGCAAAATACGCAAGCCAGGGATCGGCCTGATCCCCCCTGCATGCTGTCAACCC
TGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
Found at i:10487327 original size:26 final size:26
Alignment explanation
Indices: 10487288--10487338 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
10487278 GATCCGATCT
*
10487288 TAGACTAGGAATGAACTTCGTATGCA
1 TAGACTAGGAATGAACTCCGTATGCA
*
10487314 TAGACTAGGGATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
10487339 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCA
Found at i:10487409 original size:868 final size:869
Alignment explanation
Indices: 10485732--10488088 Score: 2625
Period size: 868 Copynumber: 2.7 Consensus size: 869
10485722 CTCGGTCCGA
** *
10485732 CTGCCACAACCCTCGGTCCAGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGT-CAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * *
10485797 CACGAAAAGGGAGTGCG-GACGCTCAGCTGGCCGAAAAGGTAGAATACGTAAGCCGAGGATCGGC
65 CACGAAAA-AGCGTGCGAG-CGCTCAACCGGCCGAAAAGGCAGAATACGCAAGCAG-GGATCGGC
* * ** * *
10485861 CTGATCCCCTCTGCATGCTGCCGATCCTGCTG-CTGCAACCCTTGGTCCAATCTGATCTTAGACT
127 CTGGTCCCCCCTGCATGCTGTTGATCCTGCTGTC-GCAACCCTCGGTCCGATCTGATCTTAGACT
* * * * * *
10485925 AGGAATGAAC-CCCTATGCTTAGA-TTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAAC
191 GGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC
* * * *
10485988 GAGCGTGCGGGTGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GACCCAGTCCC
255 GAGCGTGCGGGTGCTCAGCAGGTCAGAGAGGCAGAATGCGTAAGCCGGGGATCGGACCGA-T-CC
* * ** **
10486052 CCCCTGCGTGCTGTCAATCTTGCTATCGCAACCCTCGGCCCGGTCCGATCTTAGACTAAGAATGA
318 CCCCTGCGTGCTGTCAATCCTGCTATCGCAACCCTTGATCCGGTCCGATCTTAGACTGGGAATGA
* * * *
10486117 ACT-TCGTATGCCTAAGTCAACC-CATGAAATGAGCGTTCGGGCACTAAGCCGACCGGAGAGGCA
383 ACTCT-GTATGCCTAAGTCAACCACA--AAACGAGCGTTCGGGCGCTGAG-CGACCCGAGAGGCA
* * *
10486180 TAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCAGTCCCGCTACCATAACCC
444 TAATGCGCAAGC-CGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCAGTCCCGCTACCACAACCC
* * *
10486245 TCGATCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGG-
508 TCCATTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGC
* * * * * * *
10486309 TGTGCGAGCGCTCAGCCGGTCAGAGAGGTAGAATGCGTAAGCCGGGGATCGGTCCGATCCCACCT
573 T-TACGGGCGCTCAACCGGTCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGTCCGATCCCACCT
* * * * * * * *
10486374 GTATGCTGCCGATCCTGCTGTCGTAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCC
637 GCATGCTACCGATCCTACTGCCGTAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCC
*
10486439 GCATGCTTAGACTAAGGATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGC
702 GCATGCATAGACTAAGGATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGC
* * * * * *
10486504 TCAGCAGGCCAGAGAGGTCGGCCGGAGAGATATAATGCACAAGCC-AGGGATTAGCCCGGT-CCC
767 TCAGCAGGCCAGAGAGGCCGACCGGAGAAACATAATGCACAAGCCGA-GGATCAGCCCGATCCCC
10486567 CT-T-CT-ACG-T-GCTGCCGATCCCCCTGTCAG-TCCTG
831 CTCTCCTGACGATCGCTGCCGATCCCCCTG-CAGATCCTG
* * * *
10486601 CTGCCACAACCCTCGGTCTGACTGGGGCTTAGACCTGGAATGAACTTCGTATACCTAAGCCAACC
1 CTGCCACAACCCTCGGTC-AACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
10486666 CATGAAACAAGCGTGCGAGCGCTCAACCGGCCGTAAAGGCAAAATACGCAAGTCAGGGATCGGCC
65 CACGAAA-AAGCGTGCGAGCGCTCAACCGGCCGAAAAGGCAGAATACGCAAG-CAGGGATCGGCC
*
10486731 TGGTCCCCCCTGCATGCTGTTGATCCTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGG
128 TGGTCCCCCCTGCATGCTGTTGATCCTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGG
* *
10486796 GAATGAACTCCATATGCTTAGACATGGAAGGAACTCCGTATGCCTAAGCCAATCCACGAAACGAG
193 GAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG
* * * * * *
10486861 CGTGCGGGTGCTCAACAGGCCAGAGAGGCAGAATGCGTAAGCCTGGGATCGGTCTGATCCCTCCT
258 CGTGCGGGTGCTCAGCAGGTCAGAGAGGCAGAATGCGTAAGCCGGGGATCGGACCGATCCCCCCT
* * * *
10486926 GCGTGCTGTCAACCCTGCTACCGCAACCCTTGATCCGGTCTGATCTTAGATTGGGAATGAACTCT
323 GCGTGCTGTCAATCCTGCTATCGCAACCCTTGATCCGGTCCGATCTTAGACTGGGAATGAACTCT
* * * * * * *
10486991 GTATTCCTAAGTTAACCACAAAACGAGCGTTCGAGCGCTGAGTTGATCTGAGAGGCATAATGCAC
388 GTATGCCTAAGTCAACCACAAAACGAGCGTTCGGGCGCTGAG-CGACCCGAGAGGCATAATGCGC
* * * * ** * * *
10487056 AAGCCGGAGATCAGCTCGGTCCCCCTTTACGGGCTACCGGTCTCGCTACCACAACCCTCCATTTG
452 AAGCCGG-GATCGGCCCGGTCCCCCTCTACGTGCTGTCAGTCCCGCTACCACAACCCTCCATTCG
* *
10487121 ACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGGGCTTACGGGC
516 GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCTTACGGGC
* * * * *
10487186 GCTCAACCGGTCGGATAGGCAGAATGCGCAAGTCGAGGATCAG-CCTGGTTCCC-CCTGCATGTT
581 GCTCAACCGGTCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGTCC--GATCCCACCTGCATGCT
* * * *
10487249 ATCGATCCTACTGCCGTAACCCTTGATCCGATCCGATCTTAGACTAGGAATGAACTTCGTATGCA
644 ACCGATCCTACTGCCGTAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGCATGCA
* * * *
10487314 TAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
709 TAGACTAAGGATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAGCAG
* * *
10487379 GTCGGAGAGGCCGACCGGAGAAACATAATGCACAAGTCGAGGATCAGCCCGATCCCCCTCTGCAC
774 GCCAGAGAGGCCGACCGGAGAAACATAATGCACAAGCCGAGGATCAGCCCGATCCCCCTCT---C
* * *
10487444 GCTGTCGATCCCGCTGCCGATCCCGCTGCCGATCCTG
836 -CTGACGAT--CGCTGCCGATCCCCCTGCAGATCCTG
* *
10487481 CAGCCACAACCTTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGT-CAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * * ** * * *
10487546 CACGAAATGAGCATACAAGCACTTACCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGG-C
65 CACGAAA-AAGCGTGCGAGCGCTCAACCGGCCGAAAAGGCAGAATACGCAAG-CAGGGATCGGCC
* * * ** *
10487610 TCAGTCCCCCCTACGTGCTACTGATCCTGCTGCTGGTCCTGCTGTCGTAACCCTCTATCCGGTCT
128 T-GGT-CCCCC--C-TGC-A-TG---CTG-T--TGATCCTGCTGTCGCAACCCTCGGTCCGATCT
*
10487675 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAA
180 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
10487740 CCCACAAAACGAGGGTGCGGGTGCTCAGCCGGTCAGAGAGACAGAATGCGTAAGCCGGGGATC-G
245 CCCACGAAACGAGCGTGCGGGTGCTCAGCAGGTCAGAGAGGCAGAATGCGTAAGCCGGGGATCGG
* * * * * * *
10487804 ACCCGGTCCCCCCTACATGCTGTCGATCCTACTGTCGCAACCCTT-AGTCCGATCCGATCTTAGA
310 A-CCGATCCCCCCTGCGTGCTGTCAATCCTGCTATCGCAACCCTTGA-TCCGGTCCGATCTTAGA
* ** * * * *
10487868 CTGGGAATGAACTCCGTATGCCTAAGTCAACTCATGAAACGAGCGTGCGGGCGTTGAGCCAGCCG
373 CTGGGAATGAACTCTGTATGCCTAAGTCAAC-CACAAAACGAGCGTTCGGGCGCTGAGCGACCCG
* *
10487933 AAGAGGCATAATGCGCAAGCCTGGGATCGGCCCGATCCCCCTCTACGTGCTGTCAGTCCCGCTGC
437 -AGAGGCATAATGCGCAAGCC-GGGATCGGCCCGGTCCCCCTCTACGTGCTGTCAGTCCCGCTAC
*
10487998 CACAACCCT-CAGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCAC
500 CACAACCCTCCA-TTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
*
10488062 GAAACGGGCGTACGGGCGCTCAACCGG
564 GAAACGGGCTTACGGGCGCTCAACCGG
10488089 CTGGAGAGAT
Statistics
Matches: 1238, Mismatches: 202, Indels: 72
0.82 0.13 0.05
Matches are distributed among these distances:
867 4 0.00
868 342 0.28
869 253 0.20
870 101 0.08
871 4 0.00
875 2 0.00
876 2 0.00
877 1 0.00
879 4 0.00
880 126 0.10
881 6 0.00
883 1 0.00
884 3 0.00
885 1 0.00
886 2 0.00
889 3 0.00
890 1 0.00
891 2 0.00
892 224 0.18
893 154 0.12
894 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (869 bp):
CTGCCACAACCCTCGGTCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ACGAAAAAGCGTGCGAGCGCTCAACCGGCCGAAAAGGCAGAATACGCAAGCAGGGATCGGCCTGG
TCCCCCCTGCATGCTGTTGATCCTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAA
TGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT
GCGGGTGCTCAGCAGGTCAGAGAGGCAGAATGCGTAAGCCGGGGATCGGACCGATCCCCCCTGCG
TGCTGTCAATCCTGCTATCGCAACCCTTGATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTA
TGCCTAAGTCAACCACAAAACGAGCGTTCGGGCGCTGAGCGACCCGAGAGGCATAATGCGCAAGC
CGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCAGTCCCGCTACCACAACCCTCCATTCGGCTGG
GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCTTACGGGCGCTCA
ACCGGTCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGTCCGATCCCACCTGCATGCTACCGATC
CTACTGCCGTAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGCATGCATAGACTA
AGGATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAGCAGGCCAGAG
AGGCCGACCGGAGAAACATAATGCACAAGCCGAGGATCAGCCCGATCCCCCTCTCCTGACGATCG
CTGCCGATCCCCCTGCAGATCCTG
Found at i:10487464 original size:12 final size:12
Alignment explanation
Indices: 10487443--10487478 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
10487433 CCCCTCTGCA
*
10487443 CGCTGTCGATCC
1 CGCTGCCGATCC
10487455 CGCTGCCGATCC
1 CGCTGCCGATCC
10487467 CGCTGCCGATCC
1 CGCTGCCGATCC
10487479 TGCAGCCACA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.08, C:0.47, G:0.25, T:0.19
Consensus pattern (12 bp):
CGCTGCCGATCC
Found at i:10488051 original size:159 final size:157
Alignment explanation
Indices: 10487703--10488083 Score: 392
Period size: 158 Copynumber: 2.4 Consensus size: 157
10487693 AACTCCATAT
* * * *
10487703 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGGGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
10487768 CCGGTCAGAGAGACAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTACATGCTGTCGATCC
65 CCAGCCAGAGAGACAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACATGCTGTCGATCC
* * * *
10487833 TACTGTCGCAACCCTTAGTCCGATCCGA
130 CACTGCCACAACCCTCAGTCCGATCCGA
* * * * *
10487861 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACTCATGAAACGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
10487925 GCCAGCC-GAAGAGGCATAATGCGCAAGCCTGGGATCGGCCCGATCCCCCTCTACGTGCTGTC-A
64 GCCAGCCAG-AGAGACAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC-CTACATGCTGTCGA
* * * * *
10487988 GTCCCGCTGCCACAACCCTCAGTTCG-GCTGGG
127 -TCCCACTGCCACAACCCTCAGTCCGATC-CGA
* * *
10488020 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGGGCGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGCGTGCGGGCGCTCA
10488084 ACCGGCTGGA
Statistics
Matches: 180, Mismatches: 36, Indels: 13
0.79 0.16 0.06
Matches are distributed among these distances:
157 2 0.01
158 94 0.52
159 83 0.46
160 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CAGCCAGAGAGACAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACATGCTGTCGATCCC
ACTGCCACAACCCTCAGTCCGATCCGA
Found at i:10488141 original size:26 final size:26
Alignment explanation
Indices: 10488112--10488190 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
10488102 ATGCACAAAT
**
10488112 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
10488138 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
10488164 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
10488190 C
1 C
10488191 CTAAGCCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:10488538 original size:460 final size:460
Alignment explanation
Indices: 10487678--10488569 Score: 1214
Period size: 460 Copynumber: 1.9 Consensus size: 460
10487668 CCGGTCTGAT
** * *
10487678 CTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCC
1 CTTAGACAAGGAATGAACTCCATATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCC
* ** * * *
10487743 ACAAAACGAGGGTGCGGGTGCTCAGCCGGTCAGAGAGACAGAATGCGTAAGCCGGGGATCGACCC
66 ACAAAACGAGCGTGCGGGCACTCAACCGGTCAGAAAGACAGAATGCGCAAGCCGGGGATCGACCC
** * *
10487808 GGTCCCCCCTACATGCTGTCGATCCTACTGTCGCAACCCTTAGTCCGATCCGATCTTAGACTGGG
131 AATCCCCCCTACATGCTATCGATCCTACTGTCGCAACCCTCAGTCCGATCCGATCTTAGACTGGG
* * * * **
10487873 AATGAACTCCGTATGCCTAAGTCAACTCATGAAACGAGCGTGCGGGCGTTGAGCCAGCCGAAGAG
196 AATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCACTGAGCCAGCCGAAGAG
* * *
10487938 GCATAATGCGCAAGCCTGGGATCGGCCCGATCCCCCTCTACGTGCTGTCAGTCCCGCTGCCACAA
261 GCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGATGCCAGTCCCGCTGCCACAA
* * *
10488003 CCCTCAGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACG
326 CCCTCAGTTCGACTGGGGCTTAGACATGGAAAGAACTCCCTATGCCTAAGCCAACCCACGAAACG
* * *
10488068 GGCGTACGGGCGCTCAACCGGCTGGAGAGATAGAATGCACAAATCTTAGACTGGGAATGAACTCC
391 GGCGTACGGGCACTCAACCGGCTAGAGAGACAGAATGCACAAATCTTAGACTGGGAATGAACTCC
10488133 GTATG
456 GTATG
*
10488138 CTTAGACAAGGAATGAACTCCGTATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCC
1 CTTAGACAAGGAATGAACTCCATATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * * * *
10488203 ACGAAACGAGCGTGCGGGCACTCAACCGAT-TGAAAAGGCAGAATGTGCAAGCTGGGGATCGGCC
66 ACAAAACGAGCGTGCGGGCACTCAACCGGTCAG-AAAGACAGAATGCGCAAGCCGGGGATCGACC
* * * * * * *
10488267 CAATCCTCCCTACGTGCTATCGATCCTGCTGTCGTAACCCTCGGTCTGATTCGATCTTAGACTGG
130 CAATCCCCCCTACATGCTATCGATCCTACTGTCGCAACCCTCAGTCCGATCCGATCTTAGACTGG
* * *
10488332 GAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTACGGGCACTGAGCC-GATCGAAG
195 GAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCACTGAGCCAG-CCGAAG
* * **
10488396 AGGCATAATGTGCAAGCCGGGGATCGGCCTGATCCCCCTCTGTGTGATGCC-GATCCCGCTGCCA
259 AGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGATGCCAG-TCCCGCTGCCA
* *
10488460 CAACCCTCGGTTCGACTGGGGCTTAGACATGGAAAGAACTTCCTATGCCTAAGCCAACCCACGAA
323 CAACCCTCAGTTCGACTGGGGCTTAGACATGGAAAGAACTCCCTATGCCTAAGCCAACCCACGAA
* * * * *
10488525 ATGGGTGTACGGGCACTCAGCCGGTTAGAGAGGCAGAATGCACAA
388 ACGGGCGTACGGGCACTCAACCGGCTAGAGAGACAGAATGCACAA
10488570 TCCGAAGATC
Statistics
Matches: 371, Mismatches: 58, Indels: 6
0.85 0.13 0.01
Matches are distributed among these distances:
459 3 0.01
460 368 0.99
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.19
Consensus pattern (460 bp):
CTTAGACAAGGAATGAACTCCATATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCC
ACAAAACGAGCGTGCGGGCACTCAACCGGTCAGAAAGACAGAATGCGCAAGCCGGGGATCGACCC
AATCCCCCCTACATGCTATCGATCCTACTGTCGCAACCCTCAGTCCGATCCGATCTTAGACTGGG
AATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCACTGAGCCAGCCGAAGAG
GCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGATGCCAGTCCCGCTGCCACAA
CCCTCAGTTCGACTGGGGCTTAGACATGGAAAGAACTCCCTATGCCTAAGCCAACCCACGAAACG
GGCGTACGGGCACTCAACCGGCTAGAGAGACAGAATGCACAAATCTTAGACTGGGAATGAACTCC
GTATG
Found at i:10488557 original size:159 final size:157
Alignment explanation
Indices: 10488163--10488564 Score: 429
Period size: 158 Copynumber: 2.5 Consensus size: 157
10488153 AACTCCGTAT
* * * *
10488163 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAG
* * *
10488228 CCGATTGAAAAGGCAGAATGTGCAAGCTGGGGATCGGCCCAATCCTCCCTACGTGCTATCGATCC
65 CCGGTTGAAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCAATCCTCCCTACGTGCTATCGATCC
* * ** *
10488293 TGCTGTCGTAACCCTCGGTCTGATTCGA
130 CGCTGCCACAACCCTCGGTCTGACTCGA
* * * * *
10488321 TCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTC-CTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCA
* * * **
10488385 GCCGATCGAAGAGGCATAATGTGCAAGCCGGGGATCGGCCTGATCC-CCCT-CTGTG-TGATGCC
64 GCCGGTTGAAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCAATCCTCCCTAC-GTGCT-AT--C
* *
10488447 GATCCCGCTGCCACAACCCTCGGT-TCGACTGGG
125 GATCCCGCTGCCACAACCCTCGGTCT-GACTCGA
* * *
10488480 GCTTAGACATGGAAAGAACTTCCTATGCCTAAGCCAACCCACGAAATGGGTGTACGGGCACTCAG
1 GCTTAGACATGGAATGAAC-TCCTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAG
10488545 CCGGTT-AGAGAGGCAGAATG
65 CCGGTTGA-AGAGGCAGAATG
10488565 CACAATCCGA
Statistics
Matches: 201, Mismatches: 33, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
156 2 0.01
157 9 0.04
158 95 0.47
159 92 0.46
160 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAGC
CGGTTGAAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCAATCCTCCCTACGTGCTATCGATCCC
GCTGCCACAACCCTCGGTCTGACTCGA
Found at i:10488668 original size:26 final size:26
Alignment explanation
Indices: 10488639--10488691 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10488629 CCGGTCCAAT
10488639 CTTAGACTGGGAATGAAC-TCGGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
10488665 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
10488691 C
1 C
10488692 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:10489290 original size:11 final size:11
Alignment explanation
Indices: 10489270--10489302 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
10489260 CGGTTAGGCT
10489270 CTCCGACGATG
1 CTCCGACGATG
*
10489281 CTCCGGCGATG
1 CTCCGACGATG
10489292 CTCCGACGATG
1 CTCCGACGATG
10489303 GTGCCCCACG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.15, C:0.36, G:0.30, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:10489410 original size:26 final size:26
Alignment explanation
Indices: 10489372--10489424 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10489362 GGCTCAAAAT
10489372 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10489398 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10489424 C
1 C
10489425 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10489744 original size:26 final size:26
Alignment explanation
Indices: 10489715--10489767 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10489705 CCGGTTCGAT
10489715 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGTGG-ATGAACTCCGTATG
10489741 CTTAGACTGTGGATGAACTCCGTATG
1 CTTAGACTGTGGATGAACTCCGTATG
10489767 C
1 C
10489768 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGTGGATGAACTCCGTATG
Found at i:10490789 original size:713 final size:702
Alignment explanation
Indices: 10489398--10491849 Score: 2369
Period size: 713 Copynumber: 3.5 Consensus size: 702
10489388 ACTCCGTATG
* * * * * *
10489398 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTGAG
* * *
10489462 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATC-AGCCCGATCCCCTTCTGCATGCTGTCGAT
65 CCGACCGGAGAGGCATAATGCGCAAGCCGAGGATCGA-CCCGATCCCCCTCTGCATGCTGTCGAT
10489526 CCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
129 CCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * * * * * * *
10489591 AACCCACGAAACGGACGTGCGGGCGCTTAGCTGGTCGGAGAGACAGAACGTGC-AAGTCGAGGAT
194 AACCCATGAAAAGG-CGTACGGGCGCTCAGCCGGTCAGAGGGGCA-AA-ATGCTAAGCCGAGGAT
* * ** * * *
10489655 CAG-CTCGGCCCCCCCTGCGTGCTACCAATCCTGCTGTGGTAACCCTCGGTCCGG-T-TCGATCT
256 CAGCCT-GG-TCCCTCTGCGTGCTGTCGATCCTACTGCGGTAACCCTCGGTCCGGCTATCGATCT
10489717 TAGACTGGGAATGAACTCCGTATGCTTAGACTGTGGATGAACTCCGTATGCCTAAGTCAACCCAC
319 TAGA-TGGGAATGAACTCCGTATGCTTAGACTG-GGATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * * *
10489782 GAAACGAACGTGCGGGCGTTCAACCGACCGGAGAGG-CTAGTCGAAGAGGCAGAATGTGCAAGTC
382 GAAACGAGCGTGCGGGC--TCAGCCG-TC-GAGAGGTC-GGTCGGAGAGGCAGAATGCGCAAGCC
*
10489846 GGGGATCGACCCGGT-CCCCCTGCGTGCTATCGATCCTACTGCTGGTCCTGCTGTCGTAACCCTC
442 GGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGCTGGTCCTGCTGTCGTAACCCTC
* * * *
10489910 GGTCCGGTCCAATCTTAGACTGGGAATGAACTCCTTATACTTAGACATGAAATGAACTCCGTATG
507 GGTCCGATCCGATCTTAGACTGGGAATGAACT-CTTATGCTTAGACATGGAATGAACTCCGTATG
* * ** * ** *
10489975 CCTAAGCTAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGGTCGGAGA-TTAAAATGCGCAAGT
571 CCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGT
* * * * * * * *
10490039 CGGGGACCGGCCTGGTCCCCCCCTGCGTGCTGTCGATCCTACTACCGCAACTCTTGGTCCGATCC
636 CGGGGATCGGCCAGGT-CCCCCTTGCGTGCTGTCGATCCTGCTACCGCAACACTCGGTCCGGTCT
10490104 GAT
700 GAT
* * * **
10490107 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGTGCTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTGAGC
* * * * *
10490172 CGGCCGGAGTGGCATAATACGCAAGCCGAGGATTGACCCGATCCCCCTCTG-AGTGCTATCGATC
66 CGACCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGCA-TGCTGTCGATC
* ** * **
10490236 CCACTGCCACAACCCTCGGTCCGGTTGGGGCTTAAACATGGAATGAACTCCCTATGCCTAAGATA
130 CCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * * *
10490301 ACCCATGAAATGTGCGTACAGGCACTCAACCGGTCAGAGGGGCAAAATGCATAAACCGAGGATCG
195 ACCCATGAAAAG-GCGTACGGGCGCTCAGCCGGTCAGAGGGGCAAAATGC-TAAGCCGAGGATCA
*
10490366 GCCTGGTCCCTCTACGTGCTGTCGATCCTACTGCGGTAACCCTCGGTCCGGTCTGATCCGATCTT
258 GCCTGGTCCCTCTGCGTGCTGTCGATCCTACTGCGGTAACCCTCGGTCCGG-CT-AT-CGATCTT
* *
10490431 AGATTGGGAATGAACTCCGTATGCTTAAACTGGGATGAACTCCGTATGTCTAAGTCAACCCACGA
320 AGA-TGGGAATGAACTCCGTATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGA
* * *
10490496 AATGAGCGTGCGGGCACTCAGCCTGTCGAAGAGGTCGGTTGGAGAGGAAGAATGCGCAAGCCGGG
384 AACGAGCGTGCGGG--CTCAGCC-GTCG-AGAGGTCGGTCGGAGAGGCAGAATGCGCAAGCCGGG
* * * * * * *
10490561 GATCGACCCGATCCCCCCTGCGTGCTGTCTATCCTGTTGCTGGTCCTGCTGCCGCAACCCTCGAT
445 GATCGACCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGCTGGTCCTGCTGTCGTAACCCTCGGT
* * * * *
10490626 CCGATCCGATCTTAAACTGGAAATGAACTCTATATGTTTAGACATGGAATGAACTCTGTATCCCT
510 CCGATCCGATCTTAGACTGGGAATGAACTCT-TATGCTTAGACATGGAATGAACTCCGTATGCCT
** * * * * *
10490691 AAGCCAACCCACGAAACGAGCGTATGGGTGCTTAACCGATCGAAGAGGCAGAATGCGTAAGTCAG
574 AAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGTCGG
* * *
10490756 GGATCGGCCCGGTCCCCCTTACGTGCTGTCGATCCTGCTACCGCAACACTCGATCCGGTCTGAT
639 GGATCGGCCAGGTCCCCCTTGCGTGCTGTCGATCCTGCTACCGCAACACTCGGTCCGGTCTGAT
* * *
10490820 ATTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATTCGGGCACTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTGAGC
* * * * * * * * **
10490885 C-AGTCGGAAAGGCATAATGCGCAAGTCGGGGAACGACCCGGTCCCCCTCTGTATGATGTCGGCC
66 CGA-CCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGCATGCTGTCGATC
* * * * * * * *
10490949 CCGTTACCACAACCTTCGATCCGACTGGGGCTTAGACATGGAATGACCTCTCTCTGCCTAAGCCG
130 CCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * * * * * * * *
10491014 ACCCATGAAACAGGCGTACGGGTGCTCAGCCAGCCGAAAAGGTGTAATACGCT-AGCTGGGGATT
195 ACCCATGAAA-AGGCGTACGGGCGCTCAGCCGGTC--AGAGGGGCAAAATGCTAAGCCGAGGATC
* * * * * * *
10491078 AGCCCGATCCCCCTCTGCATGCTGTCGATCCCACTGTCGGT---CCT--G--CTGCTA-CAACCT
257 AGCCTGGT--CCCTCTGCGTGCTGTCGATCCTACTG-CGGTAACCCTCGGTCCGGCTATCGATCT
* ** ** * *
10491135 TCGAT----CCG-ACT--G-GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
319 TAGATGGGAATGAACTCCGTATGCTTAGAC-TGGGATGAACTCCGTATGCCTAAGTCAACCCACG
* *
10491192 AAACGAGCGTGCGGG-T--G-C-TC---A-GTCGATCGGAGAGGCAGAATGCGCAAGCTGGGGAT
383 AAACGAGCGTGCGGGCTCAGCCGTCGAGAGGTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGAT
* * * * *
10491248 CGGCCCGGTCCCCCCCG-GTGTACTATCGATCTTGCTACTAGTCCTGCTGTCGTAACCCTCGGTC
448 CGACCCGGTCCCCCCTGCGTG--CTATCGATCCTGCTGCTGGTCCTGCTGTCGTAACCCTCGGTC
* * * * *
10491312 CAATCCGATCTTAGATTGGGAATGAAATCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTA
511 CGATCCGATCTTAGACTGGGAATGAACT-CTTATGCTTAGACATGGAATGAACTCCGTATGCCTA
10491377 AGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGTCGGG
575 AGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGTCGGG
* * * * ** * *
10491442 GATCGACTAGGTACCCCTCTGCGTGCTGTCAATCCTGCTGTCGCAACCCTCGGTCCGGTATGAT
640 GATCGGCCAGGTCCCCCT-TGCGTGCTGTCGATCCTGCTACCGCAACACTCGGTCCGGTCTGAT
** *
10491506 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCATGCGGGCATTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTGAGC
* * * * * * *
10491571 CGACCGGAGAGACATAATGCGCAAGCCGAGGATCGACGCGATCTCCCTCTACGTGTTGCCGATCC
66 CGACCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGCATGCTGTCGATCC
* * *
10491636 CGCTGCCACAACCCTCAGTTCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
** * * * * * *
10491701 CCCATGAAAAGAGCGTGTGGGCACTCAGCCGGCCGGAGAGGCAGAATACGC-AAGTCGAGGATC-
196 CCCATGAAAAG-GCGTACGGGCGCTCAGCCGGTCAGAGGGGCA-AA-ATGCTAAGCCGAGGATCA
** * * * * * * * * *
10491764 GACCCAGTCCCCCCTGCGTGCTGTCGATCATGCTGCCGCAAGCCTCGAT-CTGAT-TCGATCTTA
258 G-CCTGGT-CCCTCTGCGTGCTGTCGATCCTACTGCGGTAACCCTCGGTCCGGCTATCGATCTTA
*
10491827 GATTGGGGATGAACTCCGTATGC
321 GA-TGGGAATGAACTCCGTATGC
10491850 CTAAGTCAAC
Statistics
Matches: 1410, Mismatches: 278, Indels: 120
0.78 0.15 0.07
Matches are distributed among these distances:
683 3 0.00
684 51 0.04
685 185 0.13
686 240 0.17
687 4 0.00
689 2 0.00
690 11 0.01
691 2 0.00
692 1 0.00
694 1 0.00
695 1 0.00
696 10 0.01
697 46 0.03
698 1 0.00
699 5 0.00
700 1 0.00
704 1 0.00
705 7 0.00
707 4 0.00
708 42 0.03
709 213 0.15
710 6 0.00
711 2 0.00
712 92 0.07
713 414 0.29
714 28 0.02
715 33 0.02
716 4 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (702 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTGAGC
CGACCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGCATGCTGTCGATCC
CGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCATGAAAAGGCGTACGGGCGCTCAGCCGGTCAGAGGGGCAAAATGCTAAGCCGAGGATCAGCC
TGGTCCCTCTGCGTGCTGTCGATCCTACTGCGGTAACCCTCGGTCCGGCTATCGATCTTAGATGG
GAATGAACTCCGTATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
GTGCGGGCTCAGCCGTCGAGAGGTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGG
TCCCCCCTGCGTGCTATCGATCCTGCTGCTGGTCCTGCTGTCGTAACCCTCGGTCCGATCCGATC
TTAGACTGGGAATGAACTCTTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
GAAACGAGCGTGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCAGG
TCCCCCTTGCGTGCTGTCGATCCTGCTACCGCAACACTCGGTCCGGTCTGAT
Found at i:10491045 original size:159 final size:165
Alignment explanation
Indices: 10490663--10491261 Score: 431
Period size: 159 Copynumber: 3.7 Consensus size: 165
10490653 CTCTATATGT
* * * * *
10490663 TTAGACATGGAATGAACTCTGTATCCCTAAGCCAACCCACGAAACGAGCGTATGGGTGCTTAACC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGCC
* * * * * * *
10490728 -GATC-GAAGAGGCAGAATGCGTAAG-TCAGGGATCGGCCCGGTCCCCCT-TACGTGCTGTCGA-
66 AG-TCGGAA-AGGCATAATGCGCAAGCT-GGGGAAC-GCCCGGTCCCCCTCTGCATGATGTCGAC
* * * ***
10490788 TC-CT--G-CTAC-C-GCAACAC-TCGATCCGGTCT-GATA
127 CCACTCGGTCTACGCTACAAC-CTTCGATCC-GACTGGGGC
* * * * ** *
10490821 TTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATTCGGGCACTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGC
* *
10490885 CAGTCGGAAAGGCATAATGCGCAAG-TCGGGGAACGACCCGGTCCCCCTCTGTATGATGTCG-GC
65 CAGTCGGAAAGGCATAATGCGCAAGCT-GGGGAACG-CCCGGTCCCCCTCTGCATGATGTCGACC
10490948 C-C-C-GT-TAC-C-ACAACCTTCGATCCGACTGGGGC
128 CACTCGGTCTACGCTACAACCTTCGATCCGACTGGGGC
* * * *
10490980 TTAGACATGGAATGACCTCTC-TCTGCCTAAGCCGACCCATGAAAC-AGGCGTACGGGTGCTCAG
1 TTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGA-GCGTACGGGTGCTCAG
* * ** * * * *
10491043 CCAGCCGAAAAGGTGTAATACGCTAGCTGGGGATTA-GCCCGATCCCCCTCTGCATGCTGTCGAT
64 CCAGTCGGAAAGGCATAATGCGCAAGCTGGGGA--ACGCCCGGTCCCCCTCTGCATGATGTCGA-
*
10491107 CCCACTGTCGGTCCTGCTGCTACAACCTTCGATCCGACTGGGGC
126 CCCAC--TCGGT-CTAC-GCTACAACCTTCGATCCGACTGGGGC
* *
10491151 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGCC
* * *
10491216 -GATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCC
66 AG-TCGGAAAGGCATAATGCGCAAGCTGGGGAAC-GCCCGGTCCCCC
10491262 CCGGTGTACT
Statistics
Matches: 347, Mismatches: 61, Indels: 53
0.75 0.13 0.11
Matches are distributed among these distances:
157 2 0.01
158 92 0.27
159 126 0.36
160 4 0.01
161 3 0.01
162 1 0.00
165 1 0.00
166 2 0.01
168 2 0.01
170 3 0.01
171 110 0.32
172 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (165 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGCC
AGTCGGAAAGGCATAATGCGCAAGCTGGGGAACGCCCGGTCCCCCTCTGCATGATGTCGACCCAC
TCGGTCTACGCTACAACCTTCGATCCGACTGGGGC
Found at i:10491296 original size:171 final size:171
Alignment explanation
Indices: 10490957--10491278 Score: 373
Period size: 171 Copynumber: 1.9 Consensus size: 171
10490947 CCCCGTTACC
* * * *
10490957 ACAACCTTCGATCCGACTGGGGCTTAGACATGGAATGACCTCTCTCTGCCTAAGCCGACCCATGA
1 ACAACCTTCGATCCGACTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGA
* * *
10491022 AACAGGCGTACGGGTGCTCAGCCAGCCGAAAAGGTGTAATACGCTAGCTGGGGATTAGCCCGATC
66 AACAGGCGTACGGGTGCTCAGCCAGCCGAAAAGGAGTAATACGCAAGCTGGGGATCAGCCCGATC
* * * * * *
10491087 CCCCTCTGCATGCTGTCGATCCCACTGTCGGTCCTGCTGCT
131 CCCCCCGGCATACTATCGATCCCACTCTCAGTCCTGCTGCT
10491128 ACAACCTTCGATCCGACTGGGGCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCACG
1 ACAACCTTCGATCCGACTGGGGCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCACG
* * * * * * *
10491192 AAAC-GAGCGTGCGGGTGCTCAGTC-GATCGGAGAGGCAG-AATGCGCAAGCTGGGGATCGGCCC
65 AAACAG-GCGTACGGGTGCTCAGCCAG-CCGAAAAGG-AGTAATACGCAAGCTGGGGATCAGCCC
* **
10491254 GGTCCCCCCCGGTGTACTATCGATC
127 GATCCCCCCCGGCATACTATCGATC
10491279 TTGCTACTAG
Statistics
Matches: 126, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
170 3 0.02
171 122 0.97
172 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.20
Consensus pattern (171 bp):
ACAACCTTCGATCCGACTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGA
AACAGGCGTACGGGTGCTCAGCCAGCCGAAAAGGAGTAATACGCAAGCTGGGGATCAGCCCGATC
CCCCCCGGCATACTATCGATCCCACTCTCAGTCCTGCTGCT
Found at i:10491352 original size:26 final size:26
Alignment explanation
Indices: 10491313--10491373 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
10491303 CCCTCGGTCC
**
10491313 AATCCG-AT-CTTAGATTGGGAATGA
1 AATCCGTATGCTTAGACAGGGAATGA
10491337 AATCCGTATGCTTAGACAGGGAATGA
1 AATCCGTATGCTTAGACAGGGAATGA
*
10491363 ACTCCGTATGC
1 AATCCGTATGC
10491374 CTAAGCCAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
24 6 0.19
25 2 0.06
26 24 0.75
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (26 bp):
AATCCGTATGCTTAGACAGGGAATGA
Found at i:10491604 original size:159 final size:158
Alignment explanation
Indices: 10491347--10492020 Score: 563
Period size: 159 Copynumber: 4.2 Consensus size: 158
10491337 AATCCGTATG
* * * *
10491347 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCACTCAGC
* * * *
10491412 CGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACTAGGTACCCCTCTGCGTGCTGTCAATCC
66 CGACCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCAGGT-CCCCTCTGCGTGCTGTCGATCC
* *
10491477 TGCTGTCGCAACCCTCGGTCCGGTAT-GAT
130 TGCTGCCGCAACCCTCGGTCCGAT-TCGAT
* * * *
10491506 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCATGCGGGCATTGAG
1 CTTAGAC-AGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCACTCAG
* * * * * * *
10491570 CCGACCGGAGAGACATAATGCGCAAGCCGAGGATCGACGC-GATCTCCCTCTACGTGTTGCCGAT
65 CCGACCGGAGAGGCAGAATGCGCAAGTCGAGGATCGAC-CAGGTC-CCCTCTGCGTGCTGTCGAT
* * * * * **
10491634 CCCGCTGCCACAACCCTCAGTTCGATTGGGG
128 CCTGCTGCCGCAACCCTCGGTCCGATTCGAT
* * * * *
10491665 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-AGAGCGTGTGGGCACTCAG
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACA-AGCATGCGGGCACTCAG
* * *
10491729 CCGGCCGGAGAGGCAGAATACGCAAGTCGAGGATCGACCCA-GTCCCCCCTGCGTGCTGTCGATC
65 CCGACCGGAGAGGCAGAATGCGCAAGTCGAGGATCGA-CCAGGTCCCCTCTGCGTGCTGTCGATC
* * * *
10491793 ATGCTGCCGCAAGCCTCGATCTGATTCGAT
129 CTGCTGCCGCAACCCTCGGTCCGATTCGAT
** * * * *
10491823 CTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCGCGAAACGAGCATGCGGGAGCTCAAC
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGC-GG-G--C-A-
* * * *
10491888 CGATCGGAGAGGCCGATCGGAGAGGCAGAATGAGCAAGTCGAGGACCGGTCCA-GTCCCC-CATG
60 C--TC----A-GCCGACCGGAGAGGCAGAATGCGCAAGTCGAGGATC-GACCAGGTCCCCTC-TG
* * * * * *
10491951 CGTGCTATCGATCCTACTACCGCAACCTTCGATCCG-GTCTGAT
116 CGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGATTC-GAT
* *
10491994 CTTAGACTGGAAATGAACTCCGTATGC
1 CTTAGACAGGGAATGAACTCCGTATGC
10492021 TTAGACTGGG
Statistics
Matches: 407, Mismatches: 83, Indels: 38
0.77 0.16 0.07
Matches are distributed among these distances:
158 81 0.20
159 215 0.53
160 3 0.01
162 1 0.00
163 1 0.00
164 1 0.00
166 2 0.00
170 4 0.01
171 98 0.24
172 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCACTCAGC
CGACCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCAGGTCCCCTCTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTCGGTCCGATTCGAT
Found at i:10491905 original size:13 final size:13
Alignment explanation
Indices: 10491887--10491913 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
10491877 GGGAGCTCAA
10491887 CCGATCGGAGAGG
1 CCGATCGGAGAGG
10491900 CCGATCGGAGAGG
1 CCGATCGGAGAGG
10491913 C
1 C
10491914 AGAATGAGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.26, G:0.44, T:0.07
Consensus pattern (13 bp):
CCGATCGGAGAGG
Found at i:10492042 original size:25 final size:26
Alignment explanation
Indices: 10491994--10492045 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
10491984 CCGGTCTGAT
10491994 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
* *
10492020 CTTAGACTGG-GATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
10492045 C
1 C
10492046 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:10492754 original size:26 final size:26
Alignment explanation
Indices: 10492716--10492768 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10492706 GGCTCAAACT
10492716 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10492742 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10492768 C
1 C
10492769 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10493255 original size:158 final size:156
Alignment explanation
Indices: 10492742--10493318 Score: 595
Period size: 159 Copynumber: 3.6 Consensus size: 156
10492732 ACTCCGTATG
**
10492742 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTATGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * ** *
10492806 CCGATCGGAGAGGCAGAATGCGTAATCCGAGGATCGGCCCGGTCCCTCCCTGTGTGCTGTCGATC
65 CCGACCGAAAAGGCAGAATGCGCAAGCCGGGGATCAACCCGGTCCC-CCCTGCGTGCTGTCGATC
10492871 CTGCTGCTGCAACCCTCGGTCCGGTTTGAT
129 CTGCTGC-GCAACCCTCGGTCCGG-TTGAT
* * * *
10492901 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAACGAGCGTGCGAGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*** * * * * ** * *
10492966 CGGTTGGAAAGGCATAATGCGCAAGTCAGGGATCGTCCCAGTCCCCCTCTGCGTGCTGTCGGTCC
66 CGACCGAAAAGGCAGAATGCGCAAGCCGGGGATCAACCCGGTCCCCC-CTGCGTGCTGTCGATCC
* * **
10493031 CGCTGC-CATAACCCTCGGTCTGGTTGGGG
130 TGCTGCGC--AACCCTCGGTCCGGTT-GAT
* * * * *
10493060 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGGGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
10493124 CTGGCCGAAAAGGCAGAATACGCAAGCCGGGGATCAACTCGGTCCCCCCTGCGTGCTGTCGATCT
65 CCGACCGAAAAGGCAGAATGCGCAAGCCGGGGATCAACCCGGTCCCCCCTGCGTGCTGTCGATCC
* *
10493189 TGCTGTCGCAGCCCTCGATCCGGTCTGAT
130 TGCTG-CGCAACCCTCGGTCCGGT-TGAT
* * * *
10493218 CTTAGACTGGGGATGAACTCCGTATACCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*
10493283 CGACC-AAAGAGGCAGGATGCGCAAGCCGGGGATCAA
66 CGACCGAAA-AGGCAGAATGCGCAAGCCGGGGATCAA
10493319 ACGGGTGGTA
Statistics
Matches: 342, Mismatches: 65, Indels: 23
0.80 0.15 0.05
Matches are distributed among these distances:
157 5 0.01
158 119 0.35
159 216 0.63
160 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.19
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGAAAAGGCAGAATGCGCAAGCCGGGGATCAACCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCGCAACCCTCGGTCCGGTTGAT
Found at i:10493950 original size:26 final size:26
Alignment explanation
Indices: 10493912--10493964 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10493902 GGCTCAAACT
*
10493912 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
10493938 CTTAGACAT-GGAATAAACTCTGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
10493964 C
1 C
10493965 CTAAGCAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:10494470 original size:184 final size:184
Alignment explanation
Indices: 10494280--10494649 Score: 494
Period size: 184 Copynumber: 2.0 Consensus size: 184
10494270 TCTAACTGGG
* *
10494280 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGATAGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGAGCACTCAG
* * * * * *
10494345 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTC-GAT-CCCCCTTGCGTGCTGTCGAT
66 CCGACCGGAGAGGCAGAATGCACAAGCCAGGGACCGAC-CGGATGCCCCC-TACGTGCTGTCGAT
* ** * *
10494408 CCTGCTGCCGCAACCCTT-GGTCTGGTCCAATCTTAGACTGGGAATGAACTTCGTAT
129 CCTGCTGCCGCAA-CCTTCGATCCAGTCCAATCTTAGACTGGAAATGAACTCCGTAT
* * *
10494464 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGAGCACTCAG
** *
10494529 CCGATTGGAGAGGCAGAATGCACAAGCCAGGGACCGACCGGGTGCCCCCTACGTGCTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCACAAGCCAGGGACCGACCGGATGCCCCCTACGTGCTGTCGATCC
* **
10494594 TGCTGCTGCAACCTTCGATCCAGTTTAATCTTAGACTGGAAATGAACTCCGTAT
131 TGCTGCCGCAACCTTCGATCCAGTCCAATCTTAGACTGGAAATGAACTCCGTAT
10494648 GC
1 GC
10494650 CTAAGTTTCC
Statistics
Matches: 161, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
183 5 0.03
184 151 0.94
185 5 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGAGCACTCAG
CCGACCGGAGAGGCAGAATGCACAAGCCAGGGACCGACCGGATGCCCCCTACGTGCTGTCGATCC
TGCTGCCGCAACCTTCGATCCAGTCCAATCTTAGACTGGAAATGAACTCCGTAT
Found at i:10494477 original size:26 final size:26
Alignment explanation
Indices: 10494439--10494491 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10494429 CTGGTCCAAT
*
10494439 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10494465 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10494491 C
1 C
10494492 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10494971 original size:14 final size:14
Alignment explanation
Indices: 10494952--10494980 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
10494942 CGTAAAAATT
10494952 CACCCGAGTAAGGC
1 CACCCGAGTAAGGC
10494966 CACCCGAGTAAGGC
1 CACCCGAGTAAGGC
10494980 C
1 C
10494981 GACTTAAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.38, G:0.28, T:0.07
Consensus pattern (14 bp):
CACCCGAGTAAGGC
Found at i:10502511 original size:11 final size:11
Alignment explanation
Indices: 10502497--10502529 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
10502487 TGGTTAGGCA
10502497 CTCCGACGATG
1 CTCCGACGATG
10502508 CTCCGACGATG
1 CTCCGACGATG
*
10502519 CTCTGACGATG
1 CTCCGACGATG
10502530 GTGCCCCGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.21
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:10502960 original size:26 final size:26
Alignment explanation
Indices: 10502916--10502968 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10502906 CTGGTTCGAT
10502916 CTTAGACTGGGAATAAAC-TCTGTATG
1 CTTAGACTGGGAATAAACTTC-GTATG
* *
10502942 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
10502968 C
1 C
10502969 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCGTATG
Found at i:10503155 original size:26 final size:26
Alignment explanation
Indices: 10503126--10503178 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10503116 CCGGTCCGAT
10503126 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10503152 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10503178 C
1 C
10503179 CTAGGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10503560 original size:159 final size:158
Alignment explanation
Indices: 10503154--10503565 Score: 359
Period size: 159 Copynumber: 2.6 Consensus size: 158
10503144 TCCGTATGCT
* ** * *
10503154 TAGACTTGGAATGAACTCCGTATGCCTAGGCCAACCCACAAAACGAGCGTGCGGGCTCTCAACCG
1 TAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCG
* * * * **
10503219 ACCGGAGAGGCAGAATGCATAAG-CGAGGGACCAACCCGATCCCCCCTACGTGCTGTCGATCTTG
65 AACGGAAAGGCAGAATGCGTAAGTCGAGGGACCAACCCAATCCCCCCTACGTGCTGTCGATCCCG
** * * *
10503283 CTGCCGTAACCCTTGGTCTGATCCGATCT
130 CTGCCACAACCCTCGGTCTGATCCGAGCG
* * * * * * * *
10503312 TAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGTGTTCTGGCATTGAGCCG
1 TAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCG
* * * * * * * * *
10503377 -GCTGAAGATGCATAATGCGCAAGTCGA-GGATCGACCCAATCCCCCTCTGCGTGCTG-CTGGTC
65 AACGGAA-AGGCAGAATGCGTAAGTCGAGGGACCAACCCAATCCCCC-CTACGTGCTGTC-GATC
* * *
10503439 CCGCTGCCACAACCCTCGGTCT-AGCTGGGGCG
127 CCGCTGCCACAACCCTCGGTCTGATC-CGAGCG
* * *
10503471 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCG
1 TAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCG
*
10503536 AACGGAAAGGCAGAATGTGTAAGTC-AGGGA
65 AACGGAAAGGCAGAATGCGTAAGTCGAGGGA
10503566 GTTGACCGGT
Statistics
Matches: 193, Mismatches: 52, Indels: 17
0.74 0.20 0.06
Matches are distributed among these distances:
157 4 0.02
158 81 0.42
159 103 0.53
160 5 0.03
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
TAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGA
ACGGAAAGGCAGAATGCGTAAGTCGAGGGACCAACCCAATCCCCCCTACGTGCTGTCGATCCCGC
TGCCACAACCCTCGGTCTGATCCGAGCG
Found at i:10503657 original size:26 final size:26
Alignment explanation
Indices: 10503628--10503679 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10503618 CGGTTCGATA
*
10503628 TTAGACTG-GAAATGAACTCCGTATGC
1 TTAGACTGAG-AATGAACTCCGCATGC
*
10503654 TTAGACTGAGGATGAACTCCGCATGC
1 TTAGACTGAGAATGAACTCCGCATGC
10503680 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGCATGC
Found at i:10503792 original size:19 final size:19
Alignment explanation
Indices: 10503768--10503804 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
10503758 GGGGATCGGC
10503768 CCGATCCCACTGCGTGTTG
1 CCGATCCCACTGCGTGTTG
10503787 CCGATCCCACTGCGTGTT
1 CCGATCCCACTGCGTGTT
10503805 ACTGATCCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.11, C:0.38, G:0.24, T:0.27
Consensus pattern (19 bp):
CCGATCCCACTGCGTGTTG
Found at i:10503811 original size:19 final size:19
Alignment explanation
Indices: 10503768--10503812 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
10503758 GGGGATCGGC
*
10503768 CCGATCCCACTGCGTGTTG
1 CCGATCCCACTGCGTGTTA
10503787 CCGATCCCACTGCGTGTTA
1 CCGATCCCACTGCGTGTTA
*
10503806 CTGATCC
1 CCGATCC
10503813 TGCTGTCGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.13, C:0.38, G:0.22, T:0.27
Consensus pattern (19 bp):
CCGATCCCACTGCGTGTTA
Found at i:10503880 original size:26 final size:26
Alignment explanation
Indices: 10503842--10503894 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10503832 CCGGTCCGAT
10503842 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10503868 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
10503894 C
1 C
10503895 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10504645 original size:26 final size:26
Alignment explanation
Indices: 10504594--10504646 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
10504584 GGCTCAAACT
***
10504594 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10504620 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
10504646 C
1 C
10504647 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10504817 original size:26 final size:26
Alignment explanation
Indices: 10504776--10504828 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10504766 TTGGTTAGAT
*
10504776 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
10504802 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
10504828 C
1 C
10504829 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:10505821 original size:159 final size:158
Alignment explanation
Indices: 10505524--10505962 Score: 420
Period size: 159 Copynumber: 2.8 Consensus size: 158
10505514 CACCGTATGC
* ** * * ** *
10505524 TTAGGCATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGTC
1 TTAGACATGGAATGAACTCCATATGCATAAACCAACCCACGAAACGAGCGTGTGGGCACTCAG-C
** * * * * * * * * *
10505589 -GGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCCTGCGCGCTATCGA-TC
65 AGACCGAAGAGGCAGAACGCGCAAGCCGGGGATCAGCCCGAT-CCCCCATACGTGCT-GCAAGTC
* *
10505652 -CTGCTACCACAACCCTCAGTCCGGTC-TGAT
128 TC-GCTGCCACAACCCTCAGTCCGGTCGGGAT
* * *
10505682 CTTAGAC-TGGAAATGAACTCCATATGCATAAATCAACCCACGAAATGAGCGTGTGGGCACTGAG
1 -TTAGACATGG-AATGAACTCCATATGCATAAACCAACCCACGAAACGAGCGTGTGGGCACTCAG
** * * * *
10505746 TTGACCGAAGAGGCATAACGCGCATGTCGGGGATCAGCCCGATCCCCCTCTACGTGCTGCAAGTC
64 CAGACCGAAGAGGCAGAACGCGCAAGCCGGGGATCAGCCCGATCCCCC-ATACGTGCTGCAAGTC
** *
10505811 TCGCTGCCACAACCCTTGGTCCGGTCGGGGT
128 TCGCTGCCACAACCCTCAGTCCGGTCGGGAT
* * * *
10505842 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCACTCAGCA
1 TTAGACATGGAATGAACTCCATATGCATAAACCAACCCACGAAACGAGCGTGTGGGCACTCAGCA
* * *
10505907 GGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCATACGTGCTG
66 GACCGAAGAGGCAGAACGCGCAAGCCGGGGATCAGCCCGATCCCCCATACGTGCTG
10505963 TCGATCTTAG
Statistics
Matches: 227, Mismatches: 46, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
158 19 0.08
159 202 0.89
160 6 0.03
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCATATGCATAAACCAACCCACGAAACGAGCGTGTGGGCACTCAGCA
GACCGAAGAGGCAGAACGCGCAAGCCGGGGATCAGCCCGATCCCCCATACGTGCTGCAAGTCTCG
CTGCCACAACCCTCAGTCCGGTCGGGAT
Found at i:10506004 original size:26 final size:26
Alignment explanation
Indices: 10505968--10506020 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10505958 TGCTGTCGAT
10505968 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10505994 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10506020 C
1 C
10506021 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10506897 original size:26 final size:26
Alignment explanation
Indices: 10506848--10506899 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
10506838 CGGTCTCATT
**
10506848 TTAGACTGGGAATGAACTTTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
10506874 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
10506900 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:10507929 original size:26 final size:26
Alignment explanation
Indices: 10507891--10507943 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10507881 CCAGTCTGAT
*
10507891 CTTAGACTAGGAATGAGCTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
10507917 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
10507943 C
1 C
10507944 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:10508045 original size:184 final size:184
Alignment explanation
Indices: 10507732--10508101 Score: 560
Period size: 184 Copynumber: 2.0 Consensus size: 184
10507722 TCCGATTGGG
* * *
10507732 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAA
** * * *
10507797 CCAGTCGGAGAGGCAGAATATGCAAGCCGAGGATCAGCCTGGTCCCCCCTACGTGCTGTCGATCC
66 CCAACCGGAGAGGCAGAATACGCAAGCCGAGGACCAGCCTGGTCCCCCCTACGTGCTATCGATCC
* * *
10507862 TGCTGCCACAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAGCTCCGTAT
131 TGCTACCACAACCCTCAGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTAT
* *
10507916 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAA
* * * *
10507981 CCAACCGGAGAGGCAGAATGCGTAAGCCGGGGACCGGCCTGGTCCCCCCTACGTGCTATCGATCC
66 CCAACCGGAGAGGCAGAATACGCAAGCCGAGGACCAGCCTGGTCCCCCCTACGTGCTATCGATCC
* * *
10508046 TGCTATCGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
131 TGCTACCACAACCCTCAGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTAT
10508100 GC
1 GC
10508102 CTAAGTCAAC
Statistics
Matches: 166, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
184 166 1.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAA
CCAACCGGAGAGGCAGAATACGCAAGCCGAGGACCAGCCTGGTCCCCCCTACGTGCTATCGATCC
TGCTACCACAACCCTCAGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:10508264 original size:159 final size:158
Alignment explanation
Indices: 10507916--10508280 Score: 403
Period size: 158 Copynumber: 2.3 Consensus size: 158
10507906 AGCTCCGTAT
* * *
10507916 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACAGGCGCTCAA
* * * * *
10507981 CCAACCGGAGAGGCAGAATGCGTAAGCCGGGGACCGGCCTGGTCCCCCCTACGTGCTATCGATCC
66 CCAACCAGAGAGGCAGAATGCGCAAGCCGGGGACCGGCCCGATCCCCCCTACGTGCTACCGATCC
* * * *
10508046 TGCTATCGCAACCCTCAGTCCAGTCTGA
131 CGCTACCACAACCCTCAGTCCAGACTGA
* * * * *
10508074 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACAGGCGCTCA
** * * * ** *
10508138 ACTGACCAGAGAGGCATATTGCGCAAGTCGGGGATTGGCCCGATCCCCCTCTGCGTGCTACC-AG
65 ACCAACCAGAGAGGCAGAATGCGCAAGCCGGGGACCGGCCCGATCCCCC-CTACGTGCTACCGA-
* * *
10508202 TCCCGCTGCCACAACCCTCGGTCC-GACTGGG
128 TCCCGCTACCACAACCCTCAGTCCAGACT-GA
* *
10508233 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
10508281 GGCGTGTGAG
Statistics
Matches: 170, Mismatches: 32, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
157 1 0.01
158 96 0.56
159 72 0.42
160 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACAGGCGCTCAA
CCAACCAGAGAGGCAGAATGCGCAAGCCGGGGACCGGCCCGATCCCCCCTACGTGCTACCGATCC
CGCTACCACAACCCTCAGTCCAGACTGA
Found at i:10515017 original size:26 final size:26
Alignment explanation
Indices: 10514979--10515029 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
10514969 CCAGCACATG
*
10514979 CTTAGACTGGGAATGAACTCCGTATT
1 CTTAGACTGGGAATAAACTCCGTATT
*
10515005 CTTAGACAT-GGAATAAACTCTGTAT
1 CTTAGAC-TGGGAATAAACTCCGTAT
10515030 GCCTAAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATT
Found at i:10515503 original size:158 final size:158
Alignment explanation
Indices: 10515004--10515503 Score: 451
Period size: 158 Copynumber: 3.2 Consensus size: 158
10514994 AACTCCGTAT
* * * * *
10515004 TCTTAGACAT-GGAATAAACTCTGTATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGCGCTCA
1 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGTCGCTCA
* * * * *
10515068 ACCGATTGAAGAGGT-AGAATTCGTAAGCCGGGGATCAGC-CTGGT-CCCCCTACGTGCTGTCGA
65 GCCGATCGAAGA-GTCAGAATGCGCAAGCCGGGGATCGGCTC-GGTCCCCCCTACGTGCTGTCGA
* * *
10515130 TCTTGCTGCCACAACCCTCGATCCGGT-CGA
128 TCCTGCTGCCACAACCCTCGGTCCGATCCGA
* ** * *
10515160 TCTTAGACTAGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAGCGTGAGGGT-GCTGA
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-CGGTCGCTCA
* * * * * * * * *
10515224 GCCG-GCTGGAGAGGCATAATGCACAAGCCAGGGATCGGCTCGATCCCCCTCTGCGTGCTGTCGG
65 GCCGATC-GAAGAGTCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCC-CTACGTGCTGTCGA
* * * * * *
10515288 TCCCGCTGCCACAACCGTCGGTGC-AGCTGG
128 TCCTGCTGCCACAACCCTCGGTCCGATCCGA
* * * * * *
10515318 GCTCAGAC-GTGGAATGAAATCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGTCACTCA
1 TCTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGTCGCTCA
* * *
10515382 GCCGATCAAAGAGTCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTTCGTGCTATCGATC
65 GCCGATCGAAGAGTCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTACGTGCTGTCGATC
* ** *
10515447 CTGCTACCGTAACCCTCGGTCCGATCCAA
130 CTGCTGCCACAACCCTCGGTCCGATCCGA
*
10515476 TCTTAGACTGGGAATGAACTCTGTATGC
1 TCTTAGACTGGGAATGAACTCCGTATGC
10515504 TTAGACTGGG
Statistics
Matches: 262, Mismatches: 69, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
155 2 0.01
156 77 0.29
157 39 0.15
158 142 0.54
159 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGTCGCTCAG
CCGATCGAAGAGTCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTACGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTCCGATCCGA
Found at i:10515513 original size:26 final size:26
Alignment explanation
Indices: 10515477--10515529 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10515467 CCGATCCAAT
*
10515477 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10515503 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10515529 C
1 C
10515530 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10516082 original size:26 final size:26
Alignment explanation
Indices: 10516031--10516083 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10516021 GGCTCAAACT
**
10516031 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
10516057 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
10516083 C
1 C
10516084 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:10516550 original size:26 final size:26
Alignment explanation
Indices: 10516500--10516552 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10516490 TCTAATCGAT
**
10516500 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10516526 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10516552 C
1 C
10516553 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10517053 original size:26 final size:26
Alignment explanation
Indices: 10517024--10517076 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10517014 CCGGTCTGAT
10517024 CTTAGACTAAGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
** *
10517050 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
10517076 C
1 C
10517077 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCGTATG
Found at i:10517772 original size:26 final size:26
Alignment explanation
Indices: 10517736--10517787 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
10517726 GGCTCAAAAT
10517736 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10517762 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10517788 GCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10519941 original size:26 final size:26
Alignment explanation
Indices: 10519889--10519941 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10519879 CTGGTTCAAT
*
10519889 CTTAGACTGGGAATGAACTCTGGATG
1 CTTAGACTGGGAATGAACTCCGGATG
* *
10519915 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGGATG
10519941 C
1 C
10519942 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGGATG
Found at i:10520193 original size:343 final size:341
Alignment explanation
Indices: 10519541--10520893 Score: 1394
Period size: 343 Copynumber: 3.9 Consensus size: 341
10519531 TTGGGAAACA
* *
10519541 CCGATCTTAGACTGGGAATGAACTCTGTTTGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
1 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
* * * ** * *
10519606 AACCCACGAAACGAGTGTGTGGGCCCTTAGTCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATT
66 AACCCACGAAACGAGCGTGTGGGCGCTCAGTCGACCGGAGAGGCATAATGCGCAAGCCGAGGATC
* * * *
10519671 AGCCCGATCCCCCGCTACGCGCTGCCAGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAG
131 AGCCCGATCCCCCACTGCGTGCTGCCAGTCCCGCTACCACAACCCTCGGTCCGACT-GGGCTTAG
* ** *
10519736 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCGGGCGCTCAGTTGGT
195 AC-TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCAGCCGGC
* * * * * * *
10519800 CGGAGA-ACTAGAATGCGTAGGCCGAGGATAGGCCCGGTCTCCCC-TGCGTGCTG-CCAGTCCTG
258 CGGAGAGGC-AGAATGCGCAAGTCGGGGATCGGCCCGGTC-CCCCTTGCGTGCTGTCGA-TCCTG
* *
10519862 CTGTTGTAACCCTCGGTCTGGT
320 CTATTGTAACCCTCGGTCCGGT
* * * *
10519884 TCAATCTTAGACTGGGAATGAACTCTGGATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
1 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
* *
10519949 AACCCATGAAACGAGCGTGTGGGCGCTCAGTCGACCGGAGAGGCATAATGCGTAAGCCGAGGATC
66 AACCCACGAAACGAGCGTGTGGGCGCTCAGTCGACCGGAGAGGCATAATGCGCAAGCCGAGGATC
* * * * * **
10520014 AGCCTGATCCCCCACTGCATGTTGCCAGTCCCGCTATCATAACCCTCGGTCCGGGTAGGGCTTAG
131 AGCCCGATCCCCCACTGCGTGCTGCCAGTCCCGCTACCACAACCCTCGGTCCGACT-GGGCTTAG
* *
10520079 ACGTGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGCCGGCC
195 AC-TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * *
10520144 GGAGAGGCAGAATGCGCAATTCGGGGATCGGCCTGGTCCCCCTTGCGTGCCGTCGATCCTGCTAT
259 GGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTAT
* *
10520209 CGCAACCCTCGGTCCGGT
324 TGTAACCCTCGGTCCGGT
* *
10520227 CCGATCTTAGACTGGAAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
1 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
* * ** ** *
10520292 AACCCACAAAAGGAGCGTGTGGGCGCTCAACCGACCGGAGAGGCATAATGCATAAGTCGAGGATC
66 AACCCACGAAACGAGCGTGTGGGCGCTCAGTCGACCGGAGAGGCATAATGCGCAAGCCGAGGATC
* * * * * * * * *
10520357 AGCTCGGTCCCCCGCTGTGTGCTGTCGGT-CCGCTGCCACAACCCTCGGTCTGGCTGGTGCTTAG
131 AGCCCGATCCCCCACTGCGTGCTGCCAGTCCCGCTACCACAACCCTCGGTCCGACTGG-GCTTAG
* * * * *
10520421 TCTTGGAAAGAACTCCTTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCGCTCAACCGGCC
195 AC-TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
*
10520486 GGAGAGGCAGAATACGCAAGTCGGGGATCGGCCCGGT-CCCCTCTGCGTGCTGTCGATCCTGTTG
259 GGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCT-TGCGTGCTGTCGATCC---TG
* *
10520550 CCTATCTTGCTGCCGCTACCCTCGGTCCGGA
320 -CTA--TTG-T-----AACCCTCGGTCCGGT
* * * *
10520581 CCGATCATAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCGTAAGC
1 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGT
* * ** * *
10520645 CAACCCACGAAACGAGCGTGCGGGCACTCAG-CTGGTCGGAGAGGCAGAATGCGCAAGCTGAGGA
65 CAACCCACGAAACGAGCGTGTGGGCGCTCAGTC-GACCGGAGAGGCATAATGCGCAAGCCGAGGA
* * * ** * * ** * **
10520709 TCGGCCCGGTCCCTC-CTATGTGCTGTC-GATCCTGCTACCGTAACCCTCGGTCCGATTCGATCT
129 TCAGCCCGATCCCCCACTGCGTGCTGCCAG-TCCCGCTACCACAACCCTCGGTCCGACT-GGGCT
* * * * *
10520772 TAGACTGGGAATGAACTCCATATGCATAAGTCAACACACGAAACGAGCGTGCGGGCGCTGAGCCG
192 TAGACT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * * * * *
10520837 GTCGAAAAGGCATAATGCGTAAGCCAGGAATCAGCTCGGTCCCCCTCTGCGTGCTGT
256 GCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCT-TGCGTGCTGT
10520894 AGGTCACGCT
Statistics
Matches: 845, Mismatches: 140, Indels: 38
0.83 0.14 0.04
Matches are distributed among these distances:
341 7 0.01
342 137 0.16
343 423 0.50
344 3 0.00
345 2 0.00
346 3 0.00
348 2 0.00
352 1 0.00
353 14 0.02
354 235 0.28
355 18 0.02
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (341 bp):
CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCGTGTGGGCGCTCAGTCGACCGGAGAGGCATAATGCGCAAGCCGAGGATC
AGCCCGATCCCCCACTGCGTGCTGCCAGTCCCGCTACCACAACCCTCGGTCCGACTGGGCTTAGA
CTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGG
AGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTATTG
TAACCCTCGGTCCGGT
Found at i:10520273 original size:26 final size:26
Alignment explanation
Indices: 10520232--10520284 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10520222 CCGGTCCGAT
10520232 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
** *
10520258 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
10520284 C
1 C
10520285 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:10520436 original size:184 final size:184
Alignment explanation
Indices: 10520073--10520406 Score: 433
Period size: 184 Copynumber: 1.8 Consensus size: 184
10520063 TCCGGGTAGG
*
10520073 GCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAA
* * * * * *
10520138 CCGGCCGGAGAGGCAGAATGCGCAATTCGGGGATCGGCCTGGTCCCCCTTGCGTGCCGTCGATCC
66 CCGACCGGAGAGGCAGAATGCACAAGTCGAGGATCAGCCTGGTCCCCCCTGCGTGCCGTCGATCC
* *
10520203 TGCTATCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGAAATGAACTCCATAT
131 TGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGAAATGAACTCCATAT
* * * *
10520257 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAA-GGAGCGTGTGGGCGCTC
1 GCTTAGACGT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGG-GCGTGCGGGCGCTC
* * * *
10520320 AACCGACCGGAGAGGCATAATGCATAAGTCGAGGATCAG-CTCGGTCCCCCGCTGTGTGCTGTCG
64 AACCGACCGGAGAGGCAGAATGCACAAGTCGAGGATCAGCCT-GGTCCCCC-CTGCGTGCCGTCG
* *
10520384 GTCC-GCTGCCACAACCCTCGGTC
127 ATCCTGCTACCACAACCCTCGGTC
10520407 TGGCTGGTGC
Statistics
Matches: 127, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
183 5 0.04
184 109 0.86
185 13 0.10
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.19
Consensus pattern (184 bp):
GCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAA
CCGACCGGAGAGGCAGAATGCACAAGTCGAGGATCAGCCTGGTCCCCCCTGCGTGCCGTCGATCC
TGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGAAATGAACTCCATAT
Found at i:10520756 original size:354 final size:355
Alignment explanation
Indices: 10520213--10520893 Score: 834
Period size: 354 Copynumber: 1.9 Consensus size: 355
10520203 TGCTATCGCA
* * *
10520213 ACCCTCGGTCCGGTCCGATCTTAGACTGGAAATGAACTCCATATGCTTAGACTGGGGATGAACTC
1 ACCCTCGGTCCGGACCGATCATAGACTGGAAATGAACTCCATATGCTTAGACTGGGAATGAACTC
* * * * *
10520278 CGTATGCCTAAGTCAACCCACAAAAGGAGCGTGTGGGCGCTCAACCGACCGGAGAGGCATAATGC
66 CGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAACCGACCGGAGAGGCAGAATGC
* * * * * *
10520343 ATAAGTCGAGGATCAGCTCGGTCCCCCGCTGTGTGCTGTCGGTCCGCTGCCACAACCCTCGGTCT
131 ACAAGTCGAGGATCAGCCCGGTCCCCCGCTATGTGCTGTCGATCCGCTACCACAACCCTCGGTCC
* * * * * *
10520408 GGCT-GGTGCTTAGTCTTGGAAAGAACTCCTTATGCCTAAGCCAAC-CTACGAAACGAGCGTGCG
196 GACTCGAT-CTTAGACTGGGAAAGAACTCCATATGCATAAGCCAACAC-ACGAAACGAGCGTGCG
* * * * * *
10520471 GGCGCTCAACCGGCCGGAGAGGCAGAATACGCAAGTCGGGGATCGGCCCGGT-CCCCTCTGCGTG
259 GGCGCTCAACCGGCCGAAAAGGCAGAATACGCAAGCCAGGAATCAGCCCGGTCCCCCTCTGCGTG
10520535 CTGTCGATCCTGTTGCCTATCTTGCTGCCGCT
324 CTGTCGATCCTGTTGCCTATCTTGCTGCCGCT
* *
10520567 ACCCTCGGTCCGGACCGATCATAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACT
1 ACCCTCGGTCCGGACCGATCATAGACTGGAAATGAACTCCATATGCTTAGAC-TGGGAATGAACT
* * * * **
10520631 CCGTATGCGTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCTGGTCGGAGAGGCAGAATG
65 CCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAACCGACCGGAGAGGCAGAATG
* * * **
10520696 CGCAAG-CTGAGGATCGGCCCGGTCCCTC-CTATGTGCTGTCGATCCTGCTACCGTAACCCTCGG
130 CACAAGTC-GAGGATCAGCCCGGTCCCCCGCTATGTGCTGTCGATCC-GCTACCACAACCCTCGG
* * *
10520759 TCCGATTCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACACACGAAACGAGCGTGC
193 TCCGACTCGATCTTAGACTGGGAAAGAACTCCATATGCATAAGCCAACACACGAAACGAGCGTGC
* * * * * * *
10520824 GGGCGCTGAGCCGGTCGAAAAGGCATAATGCGTAAGCCAGGAATCAGCTCGGTCCCCCTCTGCGT
258 GGGCGCTCAACCGGCCGAAAAGGCAGAATACGCAAGCCAGGAATCAGCCCGGTCCCCCTCTGCGT
10520889 GCTGT
323 GCTGT
10520894 AGGTCACGCT
Statistics
Matches: 272, Mismatches: 49, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
353 16 0.06
354 236 0.87
355 20 0.07
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (355 bp):
ACCCTCGGTCCGGACCGATCATAGACTGGAAATGAACTCCATATGCTTAGACTGGGAATGAACTC
CGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAACCGACCGGAGAGGCAGAATGC
ACAAGTCGAGGATCAGCCCGGTCCCCCGCTATGTGCTGTCGATCCGCTACCACAACCCTCGGTCC
GACTCGATCTTAGACTGGGAAAGAACTCCATATGCATAAGCCAACACACGAAACGAGCGTGCGGG
CGCTCAACCGGCCGAAAAGGCAGAATACGCAAGCCAGGAATCAGCCCGGTCCCCCTCTGCGTGCT
GTCGATCCTGTTGCCTATCTTGCTGCCGCT
Found at i:10520975 original size:159 final size:156
Alignment explanation
Indices: 10520614--10521050 Score: 395
Period size: 159 Copynumber: 2.8 Consensus size: 156
10520604 TCCGTATGCT
* * *
10520614 TAGACATGGAATGAACTCCGTATGCGTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCTG
1 TAGA-ATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACT-AGCCG
* * * * * *
10520679 GTCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCCGGTCCCTCCTAT--GTGCTGTCGATCCT
64 GTCGGAGAGGCAGAATGCGTAAGC-CAGGATCAGCTCGGTCCC-CCTCTGCGTGCTGTAGATCCT
** * * * *
10520742 GCTACCGTAACCCTCGGTCCGATTCGATCT
127 GCTACCACAACCCTCGATCAGATGCGATCG
* * * *
10520772 TAGACTGGGAATGAACTCCATATGCATAAGTCAACACACGAAACGAGCGTGCGGGCGCTGAGCCG
1 TAGAAT-GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACT-AGCCG
* * * *
10520837 GTCGAAAAGGCATAATGCGTAAGCCAGGAATCAGCTCGGTCCCCCTCTGCGTGCTGTAGGTCAC-
64 GTCGGAGAGGCAGAATGCGTAAGCCAGG-ATCAGCTCGGTCCCCCTCTGCGTGCTGTAGATC-CT
* * *
10520901 GCTACCACAACCCTCGATCTAGCTGGGGT-G
127 GCTACCACAACCCTCGATC-AGATGCGATCG
* * * *
10520931 TAGAGATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACG-GACGTCCGGGCTCACTA-C
1 TAGA-ATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAG-CGTGCGGG--CACTAGC
* *
10520994 CGATCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCT-GGTCCCCC-CTGCGTGCTG
62 CGGTCGGAGAGGCAGAATGCGTAAGCC-AGGATC-AGCTCGGTCCCCCTCTGCGTGCTG
10521051 CCGTAACCTT
Statistics
Matches: 227, Mismatches: 40, Indels: 24
0.78 0.14 0.08
Matches are distributed among these distances:
157 8 0.04
158 98 0.43
159 105 0.46
160 13 0.06
161 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.18
Consensus pattern (156 bp):
TAGAATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTAGCCGGT
CGGAGAGGCAGAATGCGTAAGCCAGGATCAGCTCGGTCCCCCTCTGCGTGCTGTAGATCCTGCTA
CCACAACCCTCGATCAGATGCGATCG
Found at i:10521111 original size:26 final size:26
Alignment explanation
Indices: 10521075--10521127 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10521065 CTGATTTGAT
*
10521075 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
10521101 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10521127 C
1 C
10521128 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10521372 original size:331 final size:330
Alignment explanation
Indices: 10520770--10521381 Score: 766
Period size: 331 Copynumber: 1.8 Consensus size: 330
10520760 CCGATTCGAT
*
10520770 CTTAGACTGGGAATGAACTCCATATGCATAAGTCAACACACGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCATATGCATAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
10520835 CGGTCGAAAAGGCATAATGCGTAAGCCAGGAATCAGCTCGGTCCCCCTCTGCGTGCTGTAGGTCA
66 CAGTCGAAAAGGCATAATGCGTAAGCCAGGAATCAGCCCGGTCCCCCGCTGCATGCTGTAGATCA
*
10520900 CGCTACCACAACCCTCGATCTAGCTGGGGTGTAGAGATGGAATGAACTCCCTATGCCTAAGCCAA
131 CGCTACCACAACCCTCGATCTAGCTGGGGTGTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * *
10520965 CCCACAAAACGGACGTCCGGGCTCACTACCGATCGGAGAGGCAGAATGCGTAAGCCGAGGATCGA
196 CCCACAAAACGGACGTCCGGGCTCACTA-CGACCGAAGAGGCAGAATGCGTAAGCCGAGAATCGA
* *
10521030 CCTGGTCCCCCCTGCGTGCTGCCGTAACCTTCGGTCTGATTTGATCTTAGAGTGGGAATGAACTC
260 CCCGGTCCCCCCAGCGTGCTGCCGTAACCTTCGGTCTGATTTGATCTTAGAGTGGGAATGAACTC
10521095 CGTATG
325 CGTATG
* * * * * * *
10521101 CTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAAACGAGCGTGTGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCATATGCATAAGTCAACACACG-AAACGAGCGTGCGGGCGCTCAG
* * * *
10521166 CCAGTCGGAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGGT-CCCCGCTGCATGCTGTCA-AT
65 CCAGTCGAAAAGGCATAATGCGTAAGCCAGGAATCAGCCCGGTCCCCCGCTGCATGCTGT-AGAT
* * * * * *
10521229 CCCGCTGCCACAACCTTCGGT-TCGGTTGGGGCT-TAGACATGGAATGAACTCCCTATGCCTAAG
129 CACGCTACCACAACCCTCGATCT-AGCTGGGG-TGTAGACATGGAATGAACTCCCTATGCCTAAG
* ** * * * * * * *
10521292 CCTACCCATGAAACGGGCGTGCGGGCGCTCAGT-CGGCCGAAGAGGCAGAATGTGTAGGGCGAGA
192 CCAACCCACAAAACGGACGT-CCGG-GCTCACTACGACCGAAGAGGCAGAATGCGTAAGCCGAGA
*
10521356 ATCGGCCCGGTCCCCCCAGCGTGCTG
255 ATCGACCCGGTCCCCCCAGCGTGCTG
10521382 TTGATCCTGC
Statistics
Matches: 235, Mismatches: 40, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
330 1 0.00
331 166 0.71
332 62 0.26
333 6 0.03
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.19
Consensus pattern (330 bp):
CTTAGACTGGGAATGAACTCCATATGCATAAGTCAACACACGAAACGAGCGTGCGGGCGCTCAGC
CAGTCGAAAAGGCATAATGCGTAAGCCAGGAATCAGCCCGGTCCCCCGCTGCATGCTGTAGATCA
CGCTACCACAACCCTCGATCTAGCTGGGGTGTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACAAAACGGACGTCCGGGCTCACTACGACCGAAGAGGCAGAATGCGTAAGCCGAGAATCGAC
CCGGTCCCCCCAGCGTGCTGCCGTAACCTTCGGTCTGATTTGATCTTAGAGTGGGAATGAACTCC
GTATG
Found at i:10521954 original size:185 final size:185
Alignment explanation
Indices: 10521627--10521998 Score: 457
Period size: 185 Copynumber: 2.0 Consensus size: 185
10521617 TCTAACTGGG
* * * * *
10521627 GCTTATACATGGAATGAACTCTGTATGCCTAAGCCTACCCACGAAACGAGCGTACGGGCGCTCAG
1 GCTTAAACATGGAATAAACTCCGTATGCCTAAGACAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * *
10521692 CCGATCGAAGAGGCAGAATGCGCAAGTCGAGGAATGGCCCAGTCCGCCCCTGTGTGCTGTCGATC
66 CCAACCGAAGAGGCAGAATGCGCAACTCGAGGAATGACCCAGTCCGCCCCTGCGTGCTGTCGATC
*
10521757 CTACTGCCGCAACCCTCGGTCCAATCCAATCTTAGACTGGGAATGAACCCCGTAT
131 CTACTACCGCAACCCTCGGTCCAATCCAATCTTAGACTGGGAATGAACCCCGTAT
* * *
10521812 GCTTAAACATGGAATAAACTCCGTATGCCTAAGACAACCCTCGAAATGAGCGTGCAGGG-GCTCA
1 GCTTAAACATGGAATAAACTCCGTATGCCTAAGACAACCCACGAAACGAGCGTAC-GGGCGCTCA
* * * *
10521876 GCCAACCGGAGAGGCAGAATGCGCAAC-CTG-GGGATCGACTC-GATCC-CTTCCTGCGTGCTGT
65 GCCAACCGAAGAGGCAGAATGCGCAACTC-GAGGAAT-GACCCAG-TCCGC-CCCTGCGTGCTGT
* ** * *
10521937 CGATCCTATTACCGCAACCCTCGGTCTGATCTAATCTTAGACTGGGAATGAACTCCGTAT
126 CGATCCTACTACCGCAACCCTCGGTCCAATCCAATCTTAGACTGGGAATGAACCCCGTAT
10521997 GC
1 GC
10521999 CTAAGTCAAC
Statistics
Matches: 159, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
184 7 0.04
185 149 0.94
186 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.20
Consensus pattern (185 bp):
GCTTAAACATGGAATAAACTCCGTATGCCTAAGACAACCCACGAAACGAGCGTACGGGCGCTCAG
CCAACCGAAGAGGCAGAATGCGCAACTCGAGGAATGACCCAGTCCGCCCCTGCGTGCTGTCGATC
CTACTACCGCAACCCTCGGTCCAATCCAATCTTAGACTGGGAATGAACCCCGTAT
Found at i:10522328 original size:26 final size:26
Alignment explanation
Indices: 10522290--10522342 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10522280 CCAGTTCGAT
10522290 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
10522316 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAAAGAACTCCGTATG
10522342 C
1 C
10522343 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:10522479 original size:184 final size:185
Alignment explanation
Indices: 10522130--10522493 Score: 432
Period size: 184 Copynumber: 2.0 Consensus size: 185
10522120 TCCGACTGGG
* * * * *
10522130 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGAGCATGCGAGGCGCCCA
* * *
10522195 ACCGGGCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCATTGCGTGCTACTGATC
66 ACCGGACGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCATTACGTGCTACTGATC
* * *
10522260 CTGCTACCACAACCCTCGGTCCAGTTCGATCTTAGACTGGGAAAGAACTCCGTAT
131 CTGCTACCACAACCCTCGGTCCAGTCCAATCTTAGACTAGGAAAGAACTCCGTAT
* *
10522315 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGC-AGGCGCCCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGAGCATGCGAGGCGCCCA
* * * * *
10522379 GCC-GACTGAAGAGGCAGAATGCGCAAGTCGGGGATGGACCCAGTCCCC-TCTATGTGCT-GTCG
66 ACCGGAC-GAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCAT-TACGTGCTACT-G
* * ** ** *
10522441 ATCTTGCTGCCGTAACCCTTC-GTCTGGTCCAATCTTAGACTAGGAATGAACTC
128 ATCCTGCTACCACAACCC-TCGGTCCAGTCCAATCTTAGACTAGGAAAGAACTC
10522494 TGCAAGCCTA
Statistics
Matches: 150, Mismatches: 25, Indels: 9
0.82 0.14 0.05
Matches are distributed among these distances:
183 4 0.03
184 93 0.62
185 53 0.35
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGAGCATGCGAGGCGCCCA
ACCGGACGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCATTACGTGCTACTGATC
CTGCTACCACAACCCTCGGTCCAGTCCAATCTTAGACTAGGAAAGAACTCCGTAT
Found at i:10522780 original size:502 final size:499
Alignment explanation
Indices: 10521604--10522918 Score: 1382
Period size: 502 Copynumber: 2.6 Consensus size: 499
10521594 GGTTCTGCTG
* * * * ** *
10521604 CCACAACCCTAGGTCTAACTGGGGCTTATACATGGAATGAACTCTGTATGCCTAAGCCTACCCAC
1 CCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * ** * *
10521669 GAAACGAGCGTACGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGCAAG-TCGAGGAAT-GGCCC
66 GAAACGGGCATGCGGGCGCTCAGCCGGCCG-AGAGGCAGAATGCGCAAGCT-G-GGGATCGACCC
* * * * * * * *
10521732 AGTCCGCCCCTGTGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCAATCCAATCTTAGACTGG
128 AGT-C-CCCATGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCAGTTCGATCTTAGACTGG
* * * *
10521797 GAATGAACCCCGTATGCTTAAACATGGAATAAACTCCGTATGCCTAAGACAACCC-TCGAAATGA
191 GAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCAT-GAAAAGA
* * * * *
10521861 GCGTGCAGGGGCTCAGCCAACCGGAGAGGCAGAATGCGCAA-CCTGGGGATCGACTCGATCCCTT
255 GCGTGCAGGCGCTCAGCCGA-CGAAGAGGCAGAATGCGCAAGCC-GGGGATCGACCCGATCCCCT
* * * *
10521925 CCTGCGTGCTGTCGATCCTATTACCGCAACCCTCGGTCTGATCTAATCTTAGACTGGGAATGAAC
318 CCTACGTGCTGTCGATCCTACTACCGCAACCCTCGGTCTGATCCAATCTTAGACTAGGAATGAAC
* * * * * *
10521990 TCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCGTTCAGTCAGGCGGAGAGGCATAAT
383 TCCGCAAGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGGAGGAGAGGCATAAT
* * * ** *
10522055 GCGCAAGCTAGGGATTAGCCTGGTCCCCCTCTGCGTGCTGTCGGTCCCACTG
448 GCGCAAGCCAGGGATGAGCCCGGTCCCCCTCTGCGTGCTGTCAATCCCACTA
** ** *
10522107 CCACTGTCTTTC-ATCC-GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
1 CCAC-AACCCTCGGTCCAG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* * * * * *
10522170 ATGAAATGGGCATGCGGGGTGCTCAACCGGGCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACC
64 ACGAAACGGGCATGC-GGGCGCTCAGCC-GGCCGAGAGGCAGAATGCGCAAGCTGGGGATCGACC
* * *
10522235 CAGTCCCCATTGCGTGCTACTGATCCTGCTACCACAACCCTCGGTCCAGTTCGATCTTAGACTGG
127 CAGTCCCCA-TGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCAGTTCGATCTTAGACTGG
* *
10522300 GAAAGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAG
191 GAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCATGAAAAGAG
* * *
10522365 CGTGCAGGCGCCCAGCCGACTGAAGAGGCAGAATGCGCAAGTCGGGGATGGACCC-AGTCCCCT-
256 CGTGCAGGCGCTCAGCCGAC-GAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGA-TCCCCTC
* * * * * *
10522428 CTATGTGCTGTCGATCTTGCTGCCGTAACCCTTC-GTCTGGTCCAATCTTAGACTAGGAATGAAC
319 CTACGTGCTGTCGATCCTACTACCGCAACCC-TCGGTCTGATCCAATCTTAGACTAGGAATGAAC
* * * * * *
10522492 TCTGCAAGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTGAGCC-GATAGGAGAGGCATAA
383 TCCGCAAGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAG-GAGGAGAGGCATAA
* * * *
10522556 TGTGCAAGCCGGGGATCGA-CCCGGTCCCCC-CTTCGTG-TGCTACCAATCCCGCTA
447 TGCGCAAGCCAGGGAT-GAGCCCGGTCCCCCTCTGCGTGCTG-T--CAATCCCACTA
* * *
10522610 CCACAACCCTCGGTCCAGCAGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCAC
1 CCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * *
10522675 GAAACGGGCTTGCGGGCGCTTAGCCGGCCAGAGAGGCAAAATGCGCAAGCTGGGGATCAACCCGG
66 GAAACGGGCATGCGGGCGCTCAGCCGGCC-GAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAG
* *
10522740 TCCCTCATGCGTGCTGCCGATCCTGTTGCCACAACCCTCGGTCC-GGTCTGATCTTAGACTGGGA
130 TCCC-CATGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCAGTTC-GATCTTAGACTGGGA
* * * * *
10522804 ATGAACTCCGTATGCTTAGAC-TGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGC
193 ATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGACAACCCATGAAAAGAGC
* * * *
10522868 GTGCGGGCGCTCAACCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGA
257 GTGCAGGCGCTCAGCCGACGA-AGAGGCAGAATGCGCAAGCCGGGGATCGA
10522919 ACGGGTGGTA
Statistics
Matches: 669, Mismatches: 119, Indels: 49
0.80 0.14 0.06
Matches are distributed among these distances:
500 2 0.00
501 16 0.02
502 322 0.48
503 286 0.43
504 41 0.06
505 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (499 bp):
CCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
GAAACGGGCATGCGGGCGCTCAGCCGGCCGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAGT
CCCCATGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATG
AACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCATGAAAAGAGCGTGC
AGGCGCTCAGCCGACGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCTCCTACGTG
CTGTCGATCCTACTACCGCAACCCTCGGTCTGATCCAATCTTAGACTAGGAATGAACTCCGCAAG
CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGGAGGAGAGGCATAATGCGCAAGC
CAGGGATGAGCCCGGTCCCCCTCTGCGTGCTGTCAATCCCACTA
Found at i:10522818 original size:158 final size:157
Alignment explanation
Indices: 10522316--10522818 Score: 462
Period size: 158 Copynumber: 3.2 Consensus size: 157
10522306 ACTCCGTATG
* *
10522316 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCAGGCGCCCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCAGC
* * * * *
10522381 CGACTGAAGAGGCAGAATGCGCAAG-TCGGGGATGGACCCAGTCCCCTCTAT-GTGCTGTCGATC
66 CGACAG-AGAGGCAAAATGCGCAAGCT-GGGGATCGACCCGGTCCCCTC-ATGGTGCTGCCGATC
* ** * *
10522444 TTGCTGCCGTAACCCTTC-GTCTGGTCCAAT
128 CTGCTGCCACAACCC-TCGGTCCGGTCCGAT
* * * * * * *
10522474 CTTAGAC-TAGGAATGAACTCTGCAAGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCAG
* * * * * * * *
10522538 CCGATAGGAGAGGCATAATGTGCAAGCCGGGGATCGACCCGGTCCCCCCTTCGTGTGCTACCAAT
65 CCGACA-GAGAGGCAAAATGCGCAAGCTGGGGATCGACCCGGTCCCCTCAT-G-GTGCTGCCGAT
* * * * *
10522603 CCCGCTACCACAACCCTCGGTCCAG-CAGGAG
127 CCTGCTGCCACAACCCTCGGTCCGGTC-CGAT
* * * * * * *
10522634 CTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGGGCTTGCGGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCAGC
* *
10522699 CGGCCAGAGAGGCAAAATGCGCAAGCTGGGGATCAACCCGGT-CCCTCATGCGTGCTGCCGATCC
66 C-GACAGAGAGGCAAAATGCGCAAGCTGGGGATCGACCCGGTCCCCTCATG-GTGCTGCCGATCC
* *
10522763 TGTTGCCACAACCCTCGGTCCGGTCTGAT
129 TGCTGCCACAACCCTCGGTCCGGTCCGAT
10522792 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
10522819 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 61, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 3 0.01
158 148 0.54
159 10 0.04
160 108 0.40
161 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCAGC
CGACAGAGAGGCAAAATGCGCAAGCTGGGGATCGACCCGGTCCCCTCATGGTGCTGCCGATCCTG
CTGCCACAACCCTCGGTCCGGTCCGAT
Found at i:10522821 original size:26 final size:26
Alignment explanation
Indices: 10522792--10522844 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10522782 CCGGTCTGAT
10522792 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
10522818 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10522844 C
1 C
10522845 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10523829 original size:159 final size:154
Alignment explanation
Indices: 10523469--10524070 Score: 418
Period size: 158 Copynumber: 3.8 Consensus size: 154
10523459 AACTCCGTAT
* * * * * * * *
10523469 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACAAAACGAGTGTGCGGGTGCTCAA
1 GCTTAGACAGGGAATGAACTCC-TATGCATAAGCCAACCCACGAAACGGGCGTGC-GG-GCTTAG
* * * * * * * * * *
10523534 CTGGTCGGAGAGGTAGAATGCGTAAGCCAGGGATCGGCCTGGTCCCCCCTACGTACTGTCG-TTC
63 CCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCCTGCGTGCTGCCGATAC
* * * ****
10523598 CTGCTACCGCAACCCTC-AGTCCGATCCAA
127 C-GCTCCCACAAACCTCGA-TCCGATTGGG
* **** * * * * * * *
10523627 TCTTAGACTCAAAATGAACTCCGTATGCATAAGACAACGCACGAAAAGAGCGTACAGGCATTGAA
1 GCTTAGACAGGGAATGAACTCC-TATGCATAAGCCAACCCACGAAACGGGCGTGCGGGC-TT-AG
* * *
10523692 CCGGTCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCCTTCTGCGTGCTGCC-AGT
63 CCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCC--CTGCGTGCTGCCGA-T
* * * *
10523756 CCCGCTGCCATAACCCTCGATCCGATTGGG
125 ACCGCTCCCACAAACCTCGATCCGATTGGG
* * * *
10523786 GTTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGTGCTTAG
1 GCTTAGACAGGGAATGAACTC-CTATGCATAAGCCAACCCACGAAACGGGCGTGC-GG-GCTTAG
** ** * ** * * *
10523851 CCGGTCGGAGAGGCATAATAAGCAAGCCAAGGACCGGCCCAGCCCCCCCAGCATGCTGTCGATAC
63 CCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCC-GGTCCCCCTGCGTGCTGCCGATAC
* *
10523916 CGCTCCCACAAACCTCGATCTGGTTGGG
127 CGCTCCCACAAACCTCGATCCGATTGGG
* * *
10523944 GCTTAGACAGGGAATGAGCTCCCTATGCTTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACAGGGAATGAACT-CCTATGCATAAGCCAACCCACGAAACGGGCGTGC-GG-GCTTAG
* * *
10524009 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTGCGTGCTGTCGAT
63 CCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTGCGTGCTGCCGAT
10524071 CCTACTGTCG
Statistics
Matches: 344, Mismatches: 87, Indels: 27
0.75 0.19 0.06
Matches are distributed among these distances:
156 2 0.01
157 24 0.07
158 201 0.58
159 102 0.30
160 13 0.04
161 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (154 bp):
GCTTAGACAGGGAATGAACTCCTATGCATAAGCCAACCCACGAAACGGGCGTGCGGGCTTAGCCG
GTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTGCGTGCTGCCGATACCGCT
CCCACAAACCTCGATCCGATTGGG
Found at i:10524131 original size:26 final size:26
Alignment explanation
Indices: 10524102--10524154 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10524092 CCGATCCGAT
10524102 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
10524128 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10524154 C
1 C
10524155 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10524508 original size:26 final size:26
Alignment explanation
Indices: 10524458--10524508 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
10524448 TGGTCTGATC
* *
10524458 TTAGATTGGGAATGAACTCTATATGT
1 TTAGACTGGGAATGAACTCCATATGT
* *
10524484 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
10524509 CCTAAGTCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGT
Found at i:10525694 original size:158 final size:157
Alignment explanation
Indices: 10525194--10525851 Score: 624
Period size: 158 Copynumber: 4.2 Consensus size: 157
10525184 TCCGTATGCA
* * * ** * *
10525194 TAGACATAGAATGAACTCCGTATGCTTAAGCCAACCTATGAAACAAGCGTACGGTCGCTCAGTCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGT-G
* * * * * * ** * * * **
10525259 GCCGGAGAGGTAGATTGTGCAAGCC-GAGGATAGGCCCGACCCCCCCTGCGTGCTATCAATCCTA
65 GTCGGAGAGGCAGAATGCGCAAGCCAG-GGATCGGCTCGGTCCCCCTTGCGTGCTGTCGATCCCG
* ** * * **
10525323 TTGCGGCAACCCTTGATCCGGTCT-GATCT
129 CTGCCACAACCCTCGGTCCGG-CTGGGGCT
* * * * * * * * *
10525352 TGGAC-TCAGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCGTTGAGTC
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGTG
* * * * * * *
10525416 GACCGAGGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTCTACGTGCTGCCGGTCCC
65 GTCGGA-GAGGCAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCT-TGCGTGCTGTCGATCCC
* * *
10525481 GCTACCACAACCCTTGGTCCAGCTGGGGCT
128 GCTGCCACAACCCTCGGTCCGGCTGGGGCT
* * *
10525511 TAGATATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCCCTCAGCTG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG-TG
10525576 GTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCTTGCGTGCTGTCGATCCCGC
65 GTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCTTGCGTGCTGTCGATCCCGC
*
10525641 TGCCACAACCCTCGATCCGGCTGGGGCT
130 TGCCACAACCCTCGGTCCGGCTGGGGCT
* * * *
10525669 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCTTGCAGGCGCTCAGTCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGT-G
* * * * *
10525734 GTCGGAGAAGCAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCCTGCATGCTATCGATCCTGC
65 GTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCTTGCGTGCTGTCGATCCCGC
** **
10525799 TGCCGTAACCCTCGGTCCGGTCT-GATCT
130 TGCCACAACCCTCGGTCCGG-CTGGGGCT
10525827 TAGAC-TGGGAATGAACTCCGTATGC
1 TAGACAT-GGAATGAACTCCGTATGC
10525852 TTAGATTGGG
Statistics
Matches: 415, Mismatches: 75, Indels: 20
0.81 0.15 0.04
Matches are distributed among these distances:
157 7 0.02
158 283 0.68
159 119 0.29
160 6 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGTGG
TCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCTTGCGTGCTGTCGATCCCGCT
GCCACAACCCTCGGTCCGGCTGGGGCT
Found at i:10526574 original size:159 final size:158
Alignment explanation
Indices: 10526219--10526576 Score: 371
Period size: 158 Copynumber: 2.3 Consensus size: 158
10526209 AACTCCATAT
* *
10526219 GCTTAGACATGGAATGAACTCCGTATGCGTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * * * * ** *
10526284 CTGGTCGGAGAGCTAGAATGCGTAAGGCAGGGATCGGCCCGGTCCCCCCTACGTGCTATTGATCT
66 CCGATCGGAGAGCTAGAATGCGCAAGCCAAGGATCGACCCGATCCCCCCTACGTGCTACCGATCC
* *** * *
10526349 TACTGTTGCAACCCTCGGTCCGGTCTAA
131 CACTGCCACAACCCTCCGTCCGGACTAA
* * * * *
10526377 TCTTAGAC-TGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * * * * *
10526441 GCCGATCGGAGAGGC-ATAATGCGCAAGCCAAGGATCGACTCGATCCTTCTCTGCGTGCTGCCGA
65 GCCGATCGGAGA-GCTAGAATGCGCAAGCCAAGGATCGACCCGATCC-CCCCTACGTGCTACCGA
* *
10526505 TCCCACTGCCACAACCCTCCGT-CTGACTGAG
128 TCCCACTGCCACAACCCTCCGTCCGGACT-AA
*
10526536 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
10526577 AAAAATGGAC
Statistics
Matches: 161, Mismatches: 34, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
157 2 0.01
158 92 0.57
159 65 0.40
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CCGATCGGAGAGCTAGAATGCGCAAGCCAAGGATCGACCCGATCCCCCCTACGTGCTACCGATCC
CACTGCCACAACCCTCCGTCCGGACTAA
Found at i:10526594 original size:159 final size:158
Alignment explanation
Indices: 10526219--10526687 Score: 356
Period size: 158 Copynumber: 3.0 Consensus size: 158
10526209 AACTCCATAT
* ** * * *
10526219 GCTTAGACATG-GAATGAACTCCGTATGCGTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCA
1 GCTTAGAC-TGAGAATGAACTCCGTATGCCTAAGCCAACCCAAAAAACGAGCGTACGGGCACTCA
** * * * * * * * * * ***
10526283 GCTGGTCGGAGA-GCTAGAATGCGTAAGGCAGGGATCGGCCCGGTCCCCCCTACGTGCTATTGAT
65 GCCAGTCGAAGAGGC-AAAATGCGCAAGCCAAGGATCGACCCGATCCCCTCTGCGTGCTGCCGAT
** *** * * * *
10526347 CTTACTGTTGCAACCCTCGGTCCGGTCT-AA
129 CCCACTGCCACAACCCTCAGT-CTGACTGAG
* * ** * ** *
10526377 TCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTGAG
1 GCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCAAAAAACGAGCGTACGGGCACTCAG
* * * *
10526442 CC-GATCGGAGAGGCATAATGCGCAAGCCAAGGATCGACTCGATCCTTCTCTGCGTGCTGCCGAT
66 CCAG-TCGAAGAGGCAAAATGCGCAAGCCAAGGATCGACCCGATCC-CCTCTGCGTGCTGCCGAT
*
10526506 CCCACTGCCACAACCCTCCGTCTGACTGAG
129 CCCACTGCCACAACCCTCAGTCTGACTGAG
* *
10526536 GCTTAGACATG-GAATGAACTCCTTATGCCTAAGCCAACCCAAAAAATG-GACGTACGGGCACTC
1 GCTTAGAC-TGAGAATGAACTCCGTATGCCTAAGCCAACCCAAAAAACGAG-CGTACGGGCACTC
* * * * * *
10526599 AGCCAGTCGAAGAGGTAAAATGTGCAAGTCGAGGATCGGCCCGGTCCCCTCTGCGTGCTGCCGAT
64 AGCCAGTCGAAGAGGCAAAATGCGCAAGCCAAGGATCGACCCGATCCCCTCTGCGTGCTGCCGAT
* * *
10526664 CCTATTGTCACAACCCTCAGTCTG
129 CCCACTGCCACAACCCTCAGTCTG
10526688 GTTCGATCTT
Statistics
Matches: 249, Mismatches: 54, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 129 0.52
159 114 0.46
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCAAAAAACGAGCGTACGGGCACTCAG
CCAGTCGAAGAGGCAAAATGCGCAAGCCAAGGATCGACCCGATCCCCTCTGCGTGCTGCCGATCC
CACTGCCACAACCCTCAGTCTGACTGAG
Found at i:10531217 original size:156 final size:154
Alignment explanation
Indices: 10530741--10531223 Score: 390
Period size: 157 Copynumber: 3.1 Consensus size: 154
10530731 GCGTAGACAT
* * * * *
10530741 GGAATGAACTCTGTATGGCTAAGCCAACCCATGAAAAGAGCGTGCGGGCGCTCAACCGATC-GAG
1 GGAATGAACTCTCTAT-GC-AAGCCAACCCATGAAACGAGCGAGCGGGCGCTC-ATCGGTCGGAG
* * * * * *
10530805 AGGCAGAATGCGCAAGCTGGGGATCGACAC-GGTCCCCCCTGCGAGCTAATGATCCTGCTGCCGC
63 AGGCAGAATGCGCAAGTTGGGGATCG-C-CTGGTCCCCCCTACGTGCTGACGATCCTGCTGCAGC
**
10530869 AACCCTCGGTCCAGTCTA-ATCTTAGACTG
126 AACCCTCGGTCTGGTC-AGATCTTAGACTG
* ** * * * *
10530898 GGAATGAACTC-CGTATGCATAAGTCAACCCACAAAACGAGC-ATGCGGGCACTGATCCAGTCGA
1 GGAATGAACTCTC-TATGC--AAGCCAACCCATGAAACGAGCGA-GCGGGCGCTCAT-CGGTCGG
* * ** * * * * * * *
10530961 AGAGGCATAATGCGCAAGTCGGGGATCGATTCGGTCCACCTCTACATGCCGTCGGTCTTGCTACC
61 AGAGGCAGAATGCGCAAGTTGGGGATCGCCT-GGTCC-CCCCTACGTGCTGACGATCCTGCT-GC
**
10531026 A-CAACCCTCGGTCTGG-CTAGGGCTTAGACAT-
123 AGCAACCCTCGGTCTGGTC-AGATCTTAGAC-TG
*
10531057 GGAATGAACTCTCTATG-AAGCCAACCCATGAAACGGGGCGAGCGGGCGCTCAGTCGGTCGGAGA
1 GGAATGAACTCTCTATGCAAGCCAACCCATGAAAC-GAGCGAGCGGGCGCTCA-TCGGTCGGAGA
* *
10531121 GGCAGAATGCGCAAGTTGGGGATCAGCCTGGTCCCCCCTACGTGCTGCCGATCCTGCTGTAGCAA
64 GGCAGAATGCGCAAGTTGGGGATC-GCCTGGTCCCCCCTACGTGCTGACGATCCTGCTGCAGCAA
* *
10531186 CCCTCGATCTGGTCCGATCTTAGACTG
128 CCCTCGGTCTGGTCAGATCTTAGACTG
10531213 GGAATGAACTC
1 GGAATGAACTC
10531224 CATATGCTTA
Statistics
Matches: 250, Mismatches: 57, Indels: 39
0.72 0.16 0.11
Matches are distributed among these distances:
155 2 0.01
156 68 0.27
157 91 0.36
158 37 0.15
159 49 0.20
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (154 bp):
GGAATGAACTCTCTATGCAAGCCAACCCATGAAACGAGCGAGCGGGCGCTCATCGGTCGGAGAGG
CAGAATGCGCAAGTTGGGGATCGCCTGGTCCCCCCTACGTGCTGACGATCCTGCTGCAGCAACCC
TCGGTCTGGTCAGATCTTAGACTG
Found at i:10531245 original size:26 final size:26
Alignment explanation
Indices: 10531204--10531256 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10531194 CTGGTCCGAT
10531204 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10531230 CTTAGACTAGGG-ATGAACTCTATATG
1 CTTAGACT-GGGAATGAACTCCATATG
10531256 C
1 C
10531257 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10531961 original size:159 final size:158
Alignment explanation
Indices: 10531771--10532077 Score: 348
Period size: 159 Copynumber: 1.9 Consensus size: 158
10531761 CCGATCTGAT
* * * * *
10531771 CTTAGACTAGGAAGGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTGAGC
1 CTTAGACTAGGAAGGAACTCCCTATGCCTAAGCCAACACACGAAACAAGCGTGCGAGCGCTCAGC
* * * * ** * * *
10531836 CAGCTAGAAAGGCATAATGCGCAAGTCGGGGATCGACCTGGTCCCCCTCTGCGTGCTG-CTGGTC
66 CAGCCAGAAAGGCAGAATGCACAAGCCAAGGATCGACCTGATCCCCC-CTACGTGCTGTC-GATC
10531900 CCGCTGCCACAACCCTCGGTTCGGCTGGGG
129 CCGCTGCCACAACCCTCGGTTCGGCTGGGG
* * ** *
10531930 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACACAGGAAACGGGTGTGCGAGCGCTCAG
1 CTTAGACTA-GGAAGGAACTCCCTATGCCTAAGCCAACACACGAAACAAGCGTGCGAGCGCTCAG
* * *
10531994 CCGGCCAGAGAGGCAGAATGCACAAGCCAAGGATCGGCCTGATCCCCCCTACGTGCTGTCGATCC
65 CCAGCCAGAAAGGCAGAATGCACAAGCCAAGGATCGACCTGATCCCCCCTACGTGCTGTCGATCC
* * *
10532059 TGCTGTCGCAACCCTCGGT
130 CGCTGCCACAACCCTCGGT
10532078 CCAATCTGAT
Statistics
Matches: 121, Mismatches: 25, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
158 30 0.25
159 91 0.75
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.17
Consensus pattern (158 bp):
CTTAGACTAGGAAGGAACTCCCTATGCCTAAGCCAACACACGAAACAAGCGTGCGAGCGCTCAGC
CAGCCAGAAAGGCAGAATGCACAAGCCAAGGATCGACCTGATCCCCCCTACGTGCTGTCGATCCC
GCTGCCACAACCCTCGGTTCGGCTGGGG
Found at i:10532850 original size:26 final size:26
Alignment explanation
Indices: 10532812--10532864 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10532802 GGCTCAAAAT
*
10532812 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10532838 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
10532864 C
1 C
10532865 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10533140 original size:158 final size:157
Alignment explanation
Indices: 10532910--10533339 Score: 370
Period size: 158 Copynumber: 2.7 Consensus size: 157
10532900 AGCTGGCCAG
* * * * * * *
10532910 AGAGGTAGAATGCACAAGCC-AGGGATCGGCTCGGT-CCCCCCTACGTGCTGTCGATCCTGCTAC
1 AGAGGCAGAATGCACAAGCCGA-GGATCGGCCCGATCCCCCCCTGCATGCTGTCAATCCTGCTGC
** * * * *
10532973 TGCAGCCCTCAGTCTGGTATGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCATG
65 CACAACCCTC-GTCTGGT-CGATCTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCAAG
* *
10533038 AAAC-GAATGTGCAGGCGCTGA-TCCAGCCGA
128 AAACAG-ACGTGCAGGCACTGAGTCCA-CCGA
* * * * * **
10533068 AGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCTCCTCTGCATGCTGTCGGT-CTGCTGCC
1 AGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCCTGCATGCTGTCAATCCTGCTGCC
* ** *
10533132 ACAACCCTCGGTCTGGCTGGGGCTTAGAC-GTGGAATGAACTCTC-TATGCCTAAGCCAACCCAA
66 ACAACCCTC-GTCTGG-TCGATCTTAGACTG-GGAATGAACTC-CATATGCATAAGCCAACCCAA
* * * * *
10533195 GAAACAGACGTGCGGGCACTTAGTCGATCGG
127 GAAACAGACGTGCAGGCACTGAGTCCACCGA
* * *
10533226 AGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCCCTGCGTGCTGTCAATCCTGCTGTC
1 AGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCCTGCATGCTGTCAATCCTGCTGCC
* * * *
10533291 GCAACCCTCGATCCGATCCGATCTTAGACTGAGAATGAACTCCATATGC
66 ACAACCCTCG-TCTGGT-CGATCTTAGACTGGGAATGAACTCCATATGC
10533340 TTAGACTGGG
Statistics
Matches: 214, Mismatches: 46, Indels: 23
0.76 0.16 0.08
Matches are distributed among these distances:
157 1 0.00
158 150 0.70
159 62 0.29
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
AGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCCTGCATGCTGTCAATCCTGCTGCC
ACAACCCTCGTCTGGTCGATCTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCAAGAAA
CAGACGTGCAGGCACTGAGTCCACCGA
Found at i:10533354 original size:26 final size:26
Alignment explanation
Indices: 10533313--10533365 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10533303 CCGATCCGAT
10533313 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* * *
10533339 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
10533365 C
1 C
10533366 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:10533492 original size:12 final size:12
Alignment explanation
Indices: 10533472--10533501 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
10533462 CCTCTGTGTG
*
10533472 CTGTTGATCCCA
1 CTGTCGATCCCA
10533484 CTGTCGATCCCA
1 CTGTCGATCCCA
10533496 CTGTCG
1 CTGTCG
10533502 GTCCTGCTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.13, C:0.37, G:0.20, T:0.30
Consensus pattern (12 bp):
CTGTCGATCCCA
Found at i:10540112 original size:26 final size:26
Alignment explanation
Indices: 10540076--10540128 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10540066 TCTGGTCGAT
10540076 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
10540102 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
10540128 C
1 C
10540129 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:10541005 original size:26 final size:26
Alignment explanation
Indices: 10540969--10541021 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10540959 CTGGCTTAAT
10540969 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10540995 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10541021 C
1 C
10541022 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10541907 original size:155 final size:156
Alignment explanation
Indices: 10541380--10541948 Score: 585
Period size: 155 Copynumber: 3.6 Consensus size: 156
10541370 ACTCCATATG
* * * **
10541380 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * ** *
10541444 TCGACCAGAGAGGCAGAATATGCAAGCCGAGGATCGGCCCGGTACCCCCTGCATGCTGTCGATCC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCG-GGATCGGCCC-GTACCCCCTGCGTGCTGTCGATCC
10541509 TGCTGCCGCAACCCTCGATCCGATCTGAT
128 TGCTGCCGCAACCCTCGATCCGATCTGAT
* * ** * *
10541538 CTTAAATTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGC-ATGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * * * ** * *
10541602 TCG-TCGGATAGGCATAATGCGCAAGCCAGGATCGGCCCGTCCCCCTCTACGTGTTACCGGTCCC
66 -CGACCGGAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGTACCCC-CTGCGTGCTGTCGATCCT
* * * **
10541666 GCTGCCACAACCCTCGGTCCGGT-TGGGG
129 GCTGCCGCAACCCTCGATCCGATCT-GAT
*** * * * **
10541694 CTTAGACACAGAATGAACTCCCTATGCCTAAG-CTAACCCACGAAATGGGCGTGTGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAGCGTACGGGCGCTCAG
10541758 CCTG-CCGGAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGT-CCCCCTGCGTGCTGTCGATCCT
65 CC-GACCGGAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGTACCCCCTGCGTGCTGTCGATCCT
* ** * *
10541821 GTTATCGTAACCCTCAATCCGATCTGAT
129 GCTGCCGCAACCCTCGATCCGATCTGAT
*
10541849 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
*
10541914 CGACCGGAGAGGCAGGATGCGCAAGCCGGGGATCG
66 CGACCGGAGAGGCAGAATGCGCAAGCC-GGGATCG
10541949 AACGGGTGGT
Statistics
Matches: 324, Mismatches: 76, Indels: 24
0.76 0.18 0.06
Matches are distributed among these distances:
154 1 0.00
155 114 0.35
156 100 0.31
157 60 0.19
158 49 0.15
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGTACCCCCTGCGTGCTGTCGATCCTGC
TGCCGCAACCCTCGATCCGATCTGAT
Found at i:10542419 original size:18 final size:19
Alignment explanation
Indices: 10542396--10542477 Score: 68
Period size: 18 Copynumber: 4.5 Consensus size: 19
10542386 TTATTATAAC
10542396 TATTTATTAATATATATTT
1 TATTTATTAATATATATTT
10542415 T-TTTATT--T-TATATTT
1 TATTTATTAATATATATTT
** *
10542430 TATTTATTTTTGTAT-TTT
1 TATTTATTAATATATATTT
10542448 TATTTATCTAATTATATATCTT
1 TATTTAT-TAA-TATATAT-TT
10542470 TA-TTATTA
1 TATTTATTA
10542478 TTTTTATTTA
Statistics
Matches: 52, Mismatches: 3, Indels: 15
0.74 0.04 0.21
Matches are distributed among these distances:
15 8 0.15
16 7 0.13
18 17 0.33
19 5 0.10
20 6 0.12
21 5 0.10
22 4 0.08
ACGTcount: A:0.28, C:0.02, G:0.01, T:0.68
Consensus pattern (19 bp):
TATTTATTAATATATATTT
Found at i:10542483 original size:12 final size:12
Alignment explanation
Indices: 10542410--10542485 Score: 50
Period size: 12 Copynumber: 6.1 Consensus size: 12
10542400 TATTAATATA
10542410 TATT-TTTTTAT
1 TATTATTTTTAT
10542421 T-TTATATTTTATT
1 TATTAT-TTTTA-T
*
10542434 TATT-TTTGTAT
1 TATTATTTTTAT
*
10542445 TTTTATTTATCTAAT
1 TATTATTT-T-T-AT
*
10542460 TATATATCTTTAT
1 TAT-TATTTTTAT
10542473 TATTATTTTTAT
1 TATTATTTTTAT
10542485 T
1 T
10542486 TATCCTATAA
Statistics
Matches: 50, Mismatches: 6, Indels: 17
0.68 0.08 0.23
Matches are distributed among these distances:
10 2 0.04
11 6 0.12
12 21 0.42
13 8 0.16
14 4 0.08
15 5 0.10
16 4 0.08
ACGTcount: A:0.24, C:0.03, G:0.01, T:0.72
Consensus pattern (12 bp):
TATTATTTTTAT
Found at i:10542484 original size:22 final size:21
Alignment explanation
Indices: 10542459--10542515 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
10542449 ATTTATCTAA
* *
10542459 TTATATATCTTTATTATTATTT
1 TTATTTATCTTTAATATT-TTT
*
10542481 TTATTTATCCTATAATATTTTT
1 TTATTTAT-CTTTAATATTTTT
10542503 TTGATTTATCTTT
1 TT-ATTTATCTTT
10542516 TCTAATTATC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
22 15 0.52
23 14 0.48
ACGTcount: A:0.25, C:0.07, G:0.02, T:0.67
Consensus pattern (21 bp):
TTATTTATCTTTAATATTTTT
Done.