Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 58 of 402
Found at i:10543401 original size:19 final size:18
Alignment explanation
Indices: 10543378--10543426 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 18
10543368 TTTTTTTGAA
10543378 TTTTTTTATTTTATTTAT
1 TTTTTTTATTTTATTTAT
10543396 TATTTTTTATTTTATTTAT
1 T-TTTTTTATTTTATTTAT
10543415 TTATTTTTATTT
1 TT-TTTTTATTT
10543427 ATTAGATTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
18 2 0.07
19 27 0.93
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTTTTATTTTATTTAT
Found at i:10543403 original size:14 final size:13
Alignment explanation
Indices: 10543377--10543426 Score: 59
Period size: 14 Copynumber: 3.8 Consensus size: 13
10543367 TTTTTTTTGA
10543377 ATTTTT-TTATTTT
1 ATTTTTATT-TTTT
10543390 ATTTATTATTTTTT
1 ATTT-TTATTTTTT
10543404 A-TTTTATTTATTT
1 ATTTTTATTT-TTT
10543417 ATTTTTATTT
1 ATTTTTATTT
10543427 ATTAGATTAG
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
12 6 0.18
13 10 0.30
14 15 0.45
15 2 0.06
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
ATTTTTATTTTTT
Found at i:10543417 original size:23 final size:24
Alignment explanation
Indices: 10543377--10543429 Score: 76
Period size: 23 Copynumber: 2.3 Consensus size: 24
10543367 TTTTTTTTGA
10543377 ATTT-TTTTATTTTATTTATTATTT
1 ATTTATTTTATTTTATTTATT-TTT
10543401 -TTTATTTTA-TTTATTTATTTTT
1 ATTTATTTTATTTTATTTATTTTT
10543423 ATTTATT
1 ATTTATT
10543430 AGATTAGGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
22 3 0.11
23 19 0.70
24 5 0.19
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (24 bp):
ATTTATTTTATTTTATTTATTTTT
Found at i:10543445 original size:4 final size:4
Alignment explanation
Indices: 10543377--10543429 Score: 51
Period size: 4 Copynumber: 13.8 Consensus size: 4
10543367 TTTTTTTTGA
*
10543377 ATTT TTTT ATTTT ATTT A-TT ATTT -TTT ATTTT ATTT ATTT A-TT -TTT
1 ATTT ATTT A-TTT ATTT ATTT ATTT ATTT A-TTT ATTT ATTT ATTT ATTT
10543423 ATTT ATT
1 ATTT ATT
10543430 AGATTAGGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
3 10 0.24
4 23 0.56
5 8 0.20
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (4 bp):
ATTT
Found at i:10543470 original size:5 final size:5
Alignment explanation
Indices: 10543460--10543546 Score: 51
Period size: 5 Copynumber: 17.6 Consensus size: 5
10543450 CCTTTTTACC
** *
10543460 TTTAT TTTATT TTTAT CTTGGT TTTACT TTT-C TTT-T TTTAT TTTA-
1 TTTAT TTTA-T TTTAT -TTTAT TTTA-T TTTAT TTTAT TTTAT TTTAT
*
10543505 TTT-T TTTAT TTTCACT TTTAT TTTGT TTTA- -TTAT TTTAT TTT
1 TTTAT TTTAT TTT-A-T TTTAT TTTAT TTTAT TTTAT TTTAT TTT
10543547 CTTTAAATAA
Statistics
Matches: 64, Mismatches: 8, Indels: 20
0.70 0.09 0.22
Matches are distributed among these distances:
3 3 0.05
4 12 0.19
5 31 0.48
6 14 0.22
7 4 0.06
ACGTcount: A:0.14, C:0.06, G:0.03, T:0.77
Consensus pattern (5 bp):
TTTAT
Found at i:10543474 original size:17 final size:15
Alignment explanation
Indices: 10543452--10543546 Score: 65
Period size: 17 Copynumber: 6.3 Consensus size: 15
10543442 TTTAGTATCC
10543452 TTTTTACCTTTATTTTA
1 TTTTTA-CTTT-TTTTA
*
10543469 TTTTTATCTTGGTTTTA
1 TTTTTA-CTT-TTTTTA
*
10543486 CTTTT-CTTTTTTTA
1 TTTTTACTTTTTTTA
10543500 -TTTTA-TTTTTTTA
1 TTTTTACTTTTTTTA
*
10543513 TTTTCACTTTTATTT-
1 TTTTTACTTTT-TTTA
*
10543528 TGTTTTA-TTATTTTA
1 T-TTTTACTTTTTTTA
10543543 TTTT
1 TTTT
10543547 CTTTAAATAA
Statistics
Matches: 64, Mismatches: 7, Indels: 17
0.73 0.08 0.19
Matches are distributed among these distances:
13 12 0.19
14 15 0.23
15 12 0.19
16 7 0.11
17 18 0.28
ACGTcount: A:0.14, C:0.07, G:0.03, T:0.76
Consensus pattern (15 bp):
TTTTTACTTTTTTTA
Found at i:10543628 original size:60 final size:58
Alignment explanation
Indices: 10543563--10543961 Score: 575
Period size: 60 Copynumber: 6.7 Consensus size: 58
10543553 ATAAAAATAA
*
10543563 AAAAAGAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
1 AAAAA-AATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* * **
10543622 AAAAAAGGGTTTTTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAA--ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* * *
10543682 AAAAAAA-AGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAGTTTC
1 AAAAAAATA-TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTC
*
10543741 CAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
10543799 AAAAAAATCAATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAAT--ATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* ** * *
10543859 AAAAAAATCAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTC
1 AAAAAAAT--ATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*
10543919 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
10543962 GCACAAAAAC
Statistics
Matches: 311, Mismatches: 22, Indels: 15
0.89 0.06 0.04
Matches are distributed among these distances:
58 87 0.28
59 57 0.18
60 167 0.54
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.35
Consensus pattern (58 bp):
AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:10543847 original size:177 final size:177
Alignment explanation
Indices: 10543563--10543961 Score: 647
Period size: 177 Copynumber: 2.2 Consensus size: 177
10543553 ATAAAAATAA
10543563 AAAAAGAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAA
1 AAAAA-AATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAA
* *** * *
10543628 GGGTTTTTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAA-AGT
65 AGCAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAACAAT
*
10543692 TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAGTTTC
130 TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCG-AAATAAAAGTTTC
* *
10543741 CAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAA
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAA
* *
10543806 TCAATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAATCAAT
66 GCAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAA-CAAT
*
10543871 TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTC
130 TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATAAAAGTTTC
*
10543919 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
10543962 GCACAAAAAC
Statistics
Matches: 205, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
177 112 0.55
178 57 0.28
179 36 0.18
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.35
Consensus pattern (177 bp):
AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAA
GCAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAACAATT
TTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATAAAAGTTTC
Found at i:10549488 original size:16 final size:15
Alignment explanation
Indices: 10549453--10549490 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
10549443 AGAAATGTTA
10549453 GAGAAAGCTAGAAGG
1 GAGAAAGCTAGAAGG
10549468 GAGAAAGCTA-AAGAAG
1 GAGAAAGCTAGAAG--G
10549484 GAGAAAG
1 GAGAAAG
10549491 ATGGAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 3 0.14
15 10 0.48
16 8 0.38
ACGTcount: A:0.53, C:0.05, G:0.37, T:0.05
Consensus pattern (15 bp):
GAGAAAGCTAGAAGG
Found at i:10554377 original size:9 final size:9
Alignment explanation
Indices: 10554361--10554428 Score: 63
Period size: 8 Copynumber: 7.9 Consensus size: 9
10554351 ATACTATGCT
10554361 TGAAAAAAA
1 TGAAAAAAA
*
10554370 TTAAAAAAA
1 TGAAAAAAA
10554379 -GAAAAAAA
1 TGAAAAAAA
**
10554387 TG-ATGAAA
1 TGAAAAAAA
10554395 T-AAAAAAA
1 TGAAAAAAA
*
10554403 AGAGAAAAAA
1 TGA-AAAAAA
10554413 T-AAAAAAA
1 TGAAAAAAA
10554421 TGAAAAAA
1 TGAAAAAA
10554429 GAAAAAGTGA
Statistics
Matches: 46, Mismatches: 8, Indels: 10
0.72 0.12 0.16
Matches are distributed among these distances:
8 23 0.50
9 17 0.37
10 6 0.13
ACGTcount: A:0.78, C:0.00, G:0.10, T:0.12
Consensus pattern (9 bp):
TGAAAAAAA
Found at i:10554409 original size:15 final size:16
Alignment explanation
Indices: 10554382--10554442 Score: 65
Period size: 15 Copynumber: 3.9 Consensus size: 16
10554372 AAAAAAAGAA
10554382 AAAAATGATGAAATAAA-
1 AAAAA-GATGAAA-AAAG
*
10554399 AAAAAGA-GAAAAAAT
1 AAAAAGATGAAAAAAG
*
10554414 AAAAAAATGAAAAAAG
1 AAAAAGATGAAAAAAG
10554430 AAAAAG-TGAAAAA
1 AAAAAGATGAAAAA
10554443 GGAGGACTCA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
14 3 0.08
15 17 0.44
16 14 0.36
17 5 0.13
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (16 bp):
AAAAAGATGAAAAAAG
Found at i:10555525 original size:42 final size:42
Alignment explanation
Indices: 10555448--10555676 Score: 310
Period size: 42 Copynumber: 5.5 Consensus size: 42
10555438 ATGATTGTCA
10555448 AGGAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
10555489 AGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
*
10555531 A-GAGCAATTTAC-TTTC-AAAGTCATGGTGCCTCTGTTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAAGTCGTGGTG-C-C---TCTGTTTAG
10555575 AGGAGCAATTTAC-TTTCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
* * * * *
10555616 AGGAGCAATTTATTTTTCCAAAGTCATTGAGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
10555658 AGGAGCAATTT--TTTTCAAA
1 AGGAGCAATTTACTTTTCAAA
10555677 GTTGAGCCTT
Statistics
Matches: 171, Mismatches: 8, Indels: 19
0.86 0.04 0.10
Matches are distributed among these distances:
39 11 0.06
40 12 0.07
41 51 0.30
42 59 0.35
44 11 0.06
45 16 0.09
46 11 0.06
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.37
Consensus pattern (42 bp):
AGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
Found at i:10555674 original size:127 final size:127
Alignment explanation
Indices: 10555448--10555678 Score: 376
Period size: 127 Copynumber: 1.8 Consensus size: 127
10555438 ATGATTGTCA
10555448 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGT
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGT
* *
10555513 CGTGGTGCCTCTGTTTAGAGAGCAATTTACTTTCAAAGTCATGGTGCCTCTGTTCTGTTTAG
66 CATGGAGCCTCTGTTTAGAGAGCAATTTACTTTCAAAGTCATGGTGCCTCTGTTCTGTTTAG
* *
10555575 AGGAGCAATTTAC-TTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAG
1 AGGAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAG
* *
10555639 TCATTGAGCCTCTGTTTAGAGGAGCAATTT-TTTTCAAAGT
65 TCATGGAGCCTCTGTTTAGA-GAGCAATTTACTTTCAAAGT
10555679 TGAGCCTTTA
Statistics
Matches: 96, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
126 4 0.04
127 83 0.86
128 9 0.09
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.37
Consensus pattern (127 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGT
CATGGAGCCTCTGTTTAGAGAGCAATTTACTTTCAAAGTCATGGTGCCTCTGTTCTGTTTAG
Found at i:10555722 original size:12 final size:11
Alignment explanation
Indices: 10555701--10555751 Score: 57
Period size: 12 Copynumber: 4.5 Consensus size: 11
10555691 GGAGCTTGGT
10555701 AAAAAAAAACA
1 AAAAAAAAACA
10555712 AAAACAAAAACA
1 AAAA-AAAAACA
*
10555724 AACAAAAAAATA
1 AA-AAAAAAACA
* *
10555736 TAAAAAAATCA
1 AAAAAAAAACA
10555747 AAAAA
1 AAAAA
10555752 TGAAAATGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
11 15 0.45
12 16 0.48
13 2 0.06
ACGTcount: A:0.84, C:0.10, G:0.00, T:0.06
Consensus pattern (11 bp):
AAAAAAAAACA
Found at i:10555726 original size:16 final size:16
Alignment explanation
Indices: 10555701--10555750 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 16
10555691 GGAGCTTGGT
10555701 AAAAAAAAACAAAAAC
1 AAAAAAAAACAAAAAC
* *
10555717 AAAAACAAACAAAAAA
1 AAAAAAAAACAAAAAC
10555733 ATATAAAAAAATCAAAAA
1 A-A-AAAAAAA-CAAAAA
10555751 ATGAAAATGT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 15 0.54
17 1 0.04
18 6 0.21
19 6 0.21
ACGTcount: A:0.84, C:0.10, G:0.00, T:0.06
Consensus pattern (16 bp):
AAAAAAAAACAAAAAC
Found at i:10555750 original size:10 final size:9
Alignment explanation
Indices: 10555701--10555751 Score: 50
Period size: 10 Copynumber: 5.6 Consensus size: 9
10555691 GGAGCTTGGT
10555701 AAAAAAA-A
1 AAAAAAACA
*
10555709 ACAAAAACA
1 AAAAAAACA
10555718 AAAACAAACA
1 AAAA-AAACA
*
10555728 AAAAAATATA
1 AAAAAA-ACA
*
10555738 AAAAAATCA
1 AAAAAAACA
10555747 AAAAA
1 AAAAA
10555752 TGAAAATGTT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
8 6 0.17
9 12 0.34
10 17 0.49
ACGTcount: A:0.84, C:0.10, G:0.00, T:0.06
Consensus pattern (9 bp):
AAAAAAACA
Found at i:10555920 original size:16 final size:16
Alignment explanation
Indices: 10555898--10555937 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
10555888 GGTAAGTCCA
10555898 ATTTTATTTTTGTTATT
1 ATTTTATTTTT-TTATT
10555915 -TTTTATTTTTTTATT
1 ATTTTATTTTTTTATT
10555930 ATTTTATT
1 ATTTTATT
10555938 CTATATTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (16 bp):
ATTTTATTTTTTTATT
Found at i:10555924 original size:8 final size:8
Alignment explanation
Indices: 10555899--10555937 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
10555889 GTAAGTCCAA
10555899 TTTTATTT
1 TTTTATTT
10555907 TTGTTA-TT
1 TT-TTATTT
10555915 TTTTATTT
1 TTTTATTT
*
10555923 TTTTATTA
1 TTTTATTT
10555931 TTTTATT
1 TTTTATT
10555938 CTATATTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
7 3 0.11
8 22 0.79
9 3 0.11
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (8 bp):
TTTTATTT
Found at i:10555936 original size:23 final size:24
Alignment explanation
Indices: 10555899--10555946 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
10555889 GTAAGTCCAA
* * *
10555899 TTTTATTTTTGTTATTTTTTATTT
1 TTTTATTATTGTTATTCTATATTT
10555923 TTTTATTATT-TTATTCTATATTT
1 TTTTATTATTGTTATTCTATATTT
10555946 T
1 T
10555947 ATGTATATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (24 bp):
TTTTATTATTGTTATTCTATATTT
Found at i:10555957 original size:13 final size:12
Alignment explanation
Indices: 10555918--10555959 Score: 50
Period size: 11 Copynumber: 3.5 Consensus size: 12
10555908 TGTTATTTTT
*
10555918 TATTTTTTTAT-
1 TATTTTATTATA
*
10555929 TATTTTATTCTA
1 TATTTTATTATA
10555941 TATTTTATGTATA
1 TATTTTAT-TATA
10555954 TATTTT
1 TATTTT
10555960 CCTTTATATC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
11 9 0.35
12 8 0.31
13 9 0.35
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (12 bp):
TATTTTATTATA
Found at i:10556050 original size:45 final size:46
Alignment explanation
Indices: 10555977--10556087 Score: 131
Period size: 45 Copynumber: 2.5 Consensus size: 46
10555967 ATCCTATGTA
* * *
10555977 TTTATTATTTATTTATTATTACTATTTAT-TAA-TATATAT-TTTT
1 TTTATTATTTATTTTTTATTTCTATTTATCTAATTATATATCTGTT
*
10556020 TTTATTTATTTATTTTTGTATTTTTATTTATCTAATTATATATCTGTT
1 TTTA-TTATTTATTTTT-TATTTCTATTTATCTAATTATATATCTGTT
*
10556068 ATTATTA-TTATTTTTTATTT
1 TTTATTATTTATTTTTTATTT
10556088 ATCCTATAAT
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
43 4 0.07
44 11 0.19
45 16 0.28
46 11 0.19
47 10 0.17
48 6 0.10
ACGTcount: A:0.26, C:0.03, G:0.02, T:0.69
Consensus pattern (46 bp):
TTTATTATTTATTTTTTATTTCTATTTATCTAATTATATATCTGTT
Found at i:10556693 original size:18 final size:18
Alignment explanation
Indices: 10556659--10556696 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
10556649 CAGTTTAGAG
10556659 AGAAGCAGAGAGAAGGGA
1 AGAAGCAGAGAGAAGGGA
10556677 AGAAG-AGAGAGAGAGGGA
1 AGAAGCAGAGAGA-AGGGA
10556695 AG
1 AG
10556697 GAGCTTTCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.50, C:0.03, G:0.47, T:0.00
Consensus pattern (18 bp):
AGAAGCAGAGAGAAGGGA
Found at i:10556961 original size:15 final size:14
Alignment explanation
Indices: 10556941--10556980 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
10556931 CCGCTCCAGG
10556941 TTTTTTTTTTGAATA
1 TTTTTTTTTT-AATA
*
10556956 TTTTTTTTTTATTA
1 TTTTTTTTTTAATA
10556970 TTTGTTTTTTT
1 TTT-TTTTTTT
10556981 TAATTTATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 6 0.26
15 17 0.74
ACGTcount: A:0.12, C:0.00, G:0.05, T:0.82
Consensus pattern (14 bp):
TTTTTTTTTTAATA
Found at i:10557036 original size:18 final size:17
Alignment explanation
Indices: 10557013--10557073 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 17
10557003 TTAGTAATCC
10557013 TTTTTACCTTTATTTTAT
1 TTTTTA-CTTTATTTTAT
**
10557031 TTTTTATCTTGGTTTTACT
1 TTTTTA-CTTTATTTTA-T
*
10557050 TTCTTTATTTTAATTTTAT
1 TT-TTTACTTT-ATTTTAT
10557069 TTTTT
1 TTTTT
10557074 TATTTTCAAC
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 17 0.50
19 8 0.24
20 9 0.26
ACGTcount: A:0.15, C:0.08, G:0.03, T:0.74
Consensus pattern (17 bp):
TTTTTACTTTATTTTAT
Found at i:10557074 original size:14 final size:13
Alignment explanation
Indices: 10557021--10557116 Score: 52
Period size: 14 Copynumber: 6.9 Consensus size: 13
10557011 CCTTTTTACC
*
10557021 TTTATTTTATT-T
1 TTTATTTTTTTAT
*
10557033 TTTATCTTGGTTTTAC
1 TTTAT-TT--TTTTAT
*
10557049 TTTCTTTATTTTAAT
1 TTTATTT-TTTT-AT
10557064 TTTATTTTTTTAT
1 TTTATTTTTTTAT
**
10557077 TTTCA-ACTTTTAT
1 TTT-ATTTTTTTAT
*
10557090 TTTGTTTTTATTAT
1 TTTATTTTT-TTAT
10557104 TTTATTTTCTTTA
1 TTTATTTT-TTTA
10557117 AATAAAAATC
Statistics
Matches: 63, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
12 5 0.08
13 18 0.29
14 23 0.37
15 13 0.21
16 4 0.06
ACGTcount: A:0.17, C:0.06, G:0.03, T:0.74
Consensus pattern (13 bp):
TTTATTTTTTTAT
Found at i:10557077 original size:19 final size:19
Alignment explanation
Indices: 10557024--10557116 Score: 75
Period size: 19 Copynumber: 4.7 Consensus size: 19
10557014 TTTTACCTTT
* *
10557024 ATTTTA-TTTTTTATCTTG
1 ATTTTATTTTTTTATTTTA
* *
10557042 GTTTTACTTTCTTTATTTTA
1 ATTTTA-TTTTTTTATTTTA
10557062 ATTTTATTTTTTTATTTTCA
1 ATTTTATTTTTTTATTTT-A
10557082 ACTTTTATTTTGTTT-TTATT-
1 A-TTTTATTTT-TTTATT-TTA
10557102 ATTTTATTTTCTTTA
1 ATTTTATTTT-TTTA
10557117 AATAAAAATC
Statistics
Matches: 61, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
18 5 0.08
19 23 0.38
20 17 0.28
21 11 0.18
22 5 0.08
ACGTcount: A:0.17, C:0.06, G:0.03, T:0.73
Consensus pattern (19 bp):
ATTTTATTTTTTTATTTTA
Found at i:10557321 original size:117 final size:115
Alignment explanation
Indices: 10557128--10557404 Score: 423
Period size: 117 Copynumber: 2.3 Consensus size: 115
10557118 ATAAAAATCA
*
10557128 AAAAAGAATATTTTTGGGGAAAAGTTTGAAAAGTATCAATTTTCCTTGAAAATAAAATTTCAAAA
1 AAAAA-AATATTTTTGGGGAAAAG-TTG-AAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAA
*
10557193 AAATGTTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
63 AAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAATAAATTTTC
*
10557247 -AAAAAATA-TTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCCAAAAAA
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTT-C-AAAAA
10557310 AATCATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAATTTTC
64 AAT-ATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAATTTTC
*
10557363 AAAAAAATCAATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
1 AAAAAAAT--ATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
10557405 TCCTGCATAA
Statistics
Matches: 147, Mismatches: 4, Indels: 13
0.90 0.02 0.08
Matches are distributed among these distances:
114 29 0.20
115 4 0.03
116 34 0.23
117 46 0.31
118 4 0.03
119 1 0.01
120 29 0.20
ACGTcount: A:0.44, C:0.07, G:0.13, T:0.35
Consensus pattern (115 bp):
AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAA
TATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAATTTTC
Found at i:10557366 original size:59 final size:58
Alignment explanation
Indices: 10557128--10557404 Score: 425
Period size: 56 Copynumber: 4.7 Consensus size: 58
10557118 ATAAAAATCA
* *
10557128 AAAAAGAATATTTTTGGGGAAAAGTTTGAAAAGTATCAATTTTCCTTGAAAATAAAATTTC
1 AAAAA-AATATTTTTGGGGAAAAG-TTG-AAAGTATCAATTTTCCTTAAAAATAAATTTTC
*
10557189 AAAAAAATGTTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
10557247 -AAAAAATA-TTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCC
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTT-C
10557304 AAAAAAAATCATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAATAAATTTTC
1 -AAAAAAAT-ATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*
10557363 AAAAAAATCAATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
1 AAAAAAAT--ATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
10557405 TCCTGCATAA
Statistics
Matches: 204, Mismatches: 6, Indels: 14
0.91 0.03 0.06
Matches are distributed among these distances:
56 47 0.23
57 8 0.04
58 38 0.19
59 42 0.21
60 30 0.15
61 39 0.19
ACGTcount: A:0.44, C:0.07, G:0.13, T:0.35
Consensus pattern (58 bp):
AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:10558233 original size:26 final size:26
Alignment explanation
Indices: 10558195--10558247 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10558185 GGCTCAAAAT
10558195 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10558221 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10558247 C
1 C
10558248 CGAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10558725 original size:26 final size:25
Alignment explanation
Indices: 10558696--10558747 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
10558686 CTGATCCGAT
10558696 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCC-TATG
* *
10558722 CTTAGACTGGGGATGAACTCCTATG
1 CTTAGACTAGGAATGAACTCCTATG
10558747 C
1 C
10558748 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACTAGGAATGAACTCCTATG
Found at i:10559960 original size:25 final size:25
Alignment explanation
Indices: 10559932--10559983 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
10559922 CGATTCCGAT
10559932 CTTAGTAC-GGAATGAACTCCGTATG
1 CTTAG-ACGGGAATGAACTCCGTATG
*
10559957 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGAC-GGGAATGAACTCCGTATG
10559983 C
1 C
10559984 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 2 0.08
25 5 0.21
26 17 0.71
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (25 bp):
CTTAGACGGGAATGAACTCCGTATG
Found at i:10560168 original size:26 final size:26
Alignment explanation
Indices: 10560139--10560191 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10560129 CCGGTCTGAT
10560139 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
10560165 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
10560191 C
1 C
10560192 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:10560547 original size:159 final size:155
Alignment explanation
Indices: 10560165--10560598 Score: 444
Period size: 157 Copynumber: 2.7 Consensus size: 155
10560155 ACTCTGTATG
* * *
10560165 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGT-ACGGGTGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGA-GGG-GCTCAA
* * * ** *
10560229 CCGGCCGGAGAGG-TAGAATGCGCAAGCCAGAGATCGACCCGATCCCCTCTGCATGCTGTCAATC
63 CCGGTCGGAGAGGCT-GAATGCGCAAGCCAGGGATCGGCCCGATCCCCTCTGTGTACTGTCAATC
* *
10560293 TTGCTGCCGCAACCCTCAGTCCGGTCCAA
127 CTGCTGCCACAACCCTCAGTCCGGTCCAA
* *
10560322 CTTAGA-ATGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGATCG-GGGGCTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCG-T-GAGGGGCTCA
* * * *
10560385 ACCGGTCGGAGAGGCTTAATGCGTAAGCCAGGGATCGGCCCGGTCCCGCTCTGTGTACTGTCAGT
62 ACCGGTCGGAGAGGCTGAATGCGCAAGCCAGGGATCGGCCCGATCCC-CTCTGTGTACTGTCAAT
* ****
10560450 CCTGCTGCCACAACCCTCGGTCCGGCTGGGG
126 CCTGCTGCCACAACCCTCAGTCCGG-TCCAA
* * * * * *
10560481 GTTAGACATGGAATGAATTCCCTATGCCTAAGCAAACCCACGAAACGGGCGTGAGGGCACCCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGCGTGAGGG-GCTCAAC
* * * *
10560546 CGGTCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGTCCGATCCCCCCTGTGT
64 CGGTCGGAGAGGCTGAATGCGCAAGCCAGGGATCGGCCCGATCCCCTCTGTGT
10560599 GCTGCCGTAA
Statistics
Matches: 228, Mismatches: 38, Indels: 21
0.79 0.13 0.07
Matches are distributed among these distances:
156 2 0.01
157 87 0.38
158 52 0.23
159 85 0.37
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGAGGGGCTCAACCG
GTCGGAGAGGCTGAATGCGCAAGCCAGGGATCGGCCCGATCCCCTCTGTGTACTGTCAATCCTGC
TGCCACAACCCTCAGTCCGGTCCAA
Found at i:10561731 original size:26 final size:26
Alignment explanation
Indices: 10561692--10561744 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10561682 CTGATCTGAT
*
10561692 CTTAGATTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
*
10561718 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
10561744 C
1 C
10561745 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:10562233 original size:159 final size:154
Alignment explanation
Indices: 10561863--10562318 Score: 381
Period size: 157 Copynumber: 2.9 Consensus size: 154
10561853 TCTGGCCCCA
** *
10561863 CTGCCACAATCCTCGGTCCGGCTGAGGCTTAGACTTGGAATGAACT-CCTGATGCCTAAGCCAAC
1 CTGCCACAA-CCTCGGTCCGATTGGGGCTTAGAC-TGGAATGAACTCCCT-ATGCCTAAGCCAAC
* ** * *
10561927 CCACGAAACGGGTGTGCGGGCGCTCAGCCTACCGGAGAGGTAGAATGCGCAAGTCAGGGATCGAC
63 CCACGAAACGAGCATGCGGGCGCTCAGCCTACCGGAGAGGCAGAATGCGCAAGACAGGGATCGAC
10561992 CCGTCCCCCCTATGTGCTGTCGATCCTG
128 CCGTCCCCCCTATGT-CTGTCGATCCTG
* * * ** * ** *
10562020 CTACCGCAACCCTCGGTTC-AGTCT-GATCATAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
1 CTGCCACAA-CCTCGGTCCGA-T-TGGGGCTTAGACT-GGAATGAACTCCCTATGCCTAAGCCAA
* * * * * * *
10562083 CCCACGAAACGAGCATTCGGGTGCTGAGCC-AGCTGTAGAGGCATAATGCGCAAGACGGGGATCG
62 CCCACGAAACGAGCATGCGGGCGCTCAGCCTA-CCGGAGAGGCAGAATGCGCAAGACAGGGATCG
* *
10562147 GCCCGATCCACCTCTGCATGT-TGTCGATCCTG
126 ACCCG-TCC-CCCCT--ATGTCTGTCGATCCTG
*
10562179 CTGCCACAACCTTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAAC
1 CTGCCACAACC-TCGGTCCGATTGGGGCTTAGAC-TGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * * *
10562244 CA--AAAAG-GGAGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGTGTAAGTC-GAGGATCGA
64 CACGAAACGAGCA-TGCGGGCGCTCAGCCTACCGGAGAGGCAGAATGCGCAAGACAG-GGATCGA
10562305 CCCGGTCCCCCCTA
127 CCC-GTCCCCCCTA
10562319 CGTGCCACCG
Statistics
Matches: 231, Mismatches: 51, Indels: 37
0.72 0.16 0.12
Matches are distributed among these distances:
154 1 0.00
156 9 0.04
157 142 0.61
158 10 0.04
159 63 0.27
160 2 0.01
161 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (154 bp):
CTGCCACAACCTCGGTCCGATTGGGGCTTAGACTGGAATGAACTCCCTATGCCTAAGCCAACCCA
CGAAACGAGCATGCGGGCGCTCAGCCTACCGGAGAGGCAGAATGCGCAAGACAGGGATCGACCCG
TCCCCCCTATGTCTGTCGATCCTG
Found at i:10562391 original size:26 final size:26
Alignment explanation
Indices: 10562362--10562414 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10562352 CTGATCCGAT
10562362 CTTAGACT-GGGAGTGAACTCCGTATG
1 CTTAGACTGGGGA-TGAACTCCGTATG
10562388 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
10562414 C
1 C
10562415 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:10562945 original size:26 final size:26
Alignment explanation
Indices: 10562907--10562959 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10562897 CTACTCCGAT
*
10562907 CTTAGACTGGGAATGAATTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10562933 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
10562959 C
1 C
10562960 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10563290 original size:160 final size:158
Alignment explanation
Indices: 10562932--10563432 Score: 446
Period size: 158 Copynumber: 3.2 Consensus size: 158
10562922 AATTCCATAT
* * *
10562932 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
* ** * *
10562997 CCGACCGGAGA-GCTAGAATGCACAAGCCGGGGACCGACCCGATCCCCCCTGTGTACTGTCTATC
66 CCGACCGGAGAGGC-AGAATGCGCAAGCCGAAGACCGACCCGATCCCCCCTGCGTACTGTCGATC
** * **
10563061 TTGCTGCCGTAACCCTCGATCTGGTCTGA
130 CCGCTGCCGCAACCCTCGATCCAGTCTGA
* * * * * * *
10563090 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGTGCGTTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCA
* * * *
10563154 GCCGACCGGAGAGGCATAATGCGCAAGCCGAAGATCGGA-CCGGTCCCCCTCTGCGTGCTGTCGA
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGAAGA-CCGACCCGATCCCCC-CTGCGTACTGTCGA
* *
10563218 TCCCGCTG-CGACAACCCTCGGGTCCAGT-TGGG
128 TCCCGCTGCCG-CAACCCTC-GATCCAGTCT-GA
* * * * * *
10563250 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
* * ** * * *
10563315 CC-ATCCGAAGAGGCAGAATGCGCAAGCTGGGGACCG-CCTGGTCCCCCCTGCG--CTGTTGATC
66 CCGA-CCGGAGAGGCAGAATGCGCAAGCCGAAGACCGACCCGATCCCCCCTGCGTACTGTCGATC
** * *
10563376 TTGCTACCGCAACCCTCGATCCGGTCTGA
130 CCGCTGCCGCAACCCTCGATCCAGTCTGA
* *
10563405 TCTTAGAC-TAGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
10563433 TTAGACTAGG
Statistics
Matches: 277, Mismatches: 53, Indels: 29
0.77 0.15 0.08
Matches are distributed among these distances:
154 1 0.00
155 31 0.11
156 20 0.07
157 3 0.01
158 95 0.34
159 42 0.15
160 84 0.30
161 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGAAGACCGACCCGATCCCCCCTGCGTACTGTCGATCC
CGCTGCCGCAACCCTCGATCCAGTCTGA
Found at i:10563442 original size:26 final size:26
Alignment explanation
Indices: 10563406--10563458 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10563396 CCGGTCTGAT
10563406 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
10563432 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
10563458 C
1 C
10563459 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:10564105 original size:158 final size:157
Alignment explanation
Indices: 10563811--10564272 Score: 495
Period size: 158 Copynumber: 2.9 Consensus size: 157
10563801 AACTCCGTAT
* * * * * *
10563811 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAA-CGTGCGAGCGCTCA
1 GCTTAGACATGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-CAAGCGTGCGGGAGCTCA
* * * *
10563875 ACCGGTCGAGAGGCAAAAT-TCACAAGCCGGGGATCGACCTGGTCCCACCCTACGTGCTGTCGAT
65 ACCGGTCGAGAGGCAAAATGT-GCAAGCCGGGGATCGACCCGATCCC-CCCTGCGTGCTGTCGAT
*
10563939 CCTACTACCGCAACCCTCACTCC-AATGCGA
128 CCTGCTACCGCAACCCTCACTCCGAATG-GA
* *
10563969 TCTTAGAC-TAGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCT-A
1 GCTTAGACAT-GAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGAGCTCA
* * * * *
10564032 AGCCGATCGTAGAGGCATAATGTGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCCGTCGA
65 A-CCGGTCG-AGAGGCAAAATGTGCAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTGTCGA
* * ** *
10564097 TCC-GCTACCACAACCCTCAGTCCGGCTGGG
127 TCCTGCTACCGCAACCCTCACTCCGAATGGA
* * ** *
10564127 GCTTAGACATGGAATGAACTCCTTATGCCTAAGTCAACCCACGAAACGGGCGCGCGGGAGCTCAA
1 GCTTAGACATGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGAGCTCAA
* * * * * *
10564192 TCGGTCAGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTGCATGCTGCCGATCC
66 CCGGTC-GAGAGGCAAAATGTGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
10564257 TGCTACCGCAACCCTC
130 TGCTACCGCAACCCTC
10564273 GGTCGATTAG
Statistics
Matches: 253, Mismatches: 40, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
157 19 0.08
158 182 0.72
159 51 0.20
160 1 0.00
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGAGCTCAA
CCGGTCGAGAGGCAAAATGTGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTACCGCAACCCTCACTCCGAATGGA
Found at i:10564529 original size:26 final size:26
Alignment explanation
Indices: 10564478--10564530 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
10564468 ATCCGCTGAT
* *
10564478 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATAAACTCCATATG
*
10564504 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCATATG
10564530 C
1 C
10564531 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:10564543 original size:193 final size:193
Alignment explanation
Indices: 10564282--10564633 Score: 494
Period size: 193 Copynumber: 1.8 Consensus size: 193
10564272 CGGTCGATTA
* * * *
10564282 GATCTTAGATTGGGAATGAACTCTATACGCTTAGACTGGAGATGAACTCTGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCTATACGCTTAGACTGGAGATAAACTCCGTATGCCTAAGCCAA
* * * * * *
10564347 CCCACGAAACGAGCGTGTGGGTGCTCAATCGATCGGAGAGGCAGAATGCGTAAG-CTGGGGATCG
66 CCCACGAAACGAGCGTGCGGGCGCTCAATCGATCGAAGAGGCAGAATGCGCAAGTC-AGGGACCG
* *
10564411 GCCCAGTCCCCTTGCATGCCGTCGATCCTGCTGCTGGACCTGCTACCTCAACCCTTGATCCGCT
130 GCCCAGTCCCCCTACATGCCGTCGATCCTGCTGCTGGACCTGCTACCTCAACCCTTGATCCGCT
*
10564475 GATCTTAGACTGGGAATGAACT-TCATATGCTTAGACATGGA-ATAAACTCCGTATGCCTAAGCC
1 GATCTTAGACTGGGAATGAACTCT-ATACGCTTAGAC-TGGAGATAAACTCCGTATGCCTAAGCC
* *
10564538 AACCCATGAAATGAGCGTGCGGGCGCTCAATCGATCGAAGAGGCAGAATGCGCAAGTCAGGGACC
64 AACCCACGAAACGAGCGTGCGGGCGCTCAATCGATCGAAGAGGCAGAATGCGCAAGTCAGGGACC
* * *
10564603 GGCCCGGTCCCCCTACGTGCTGTCGATCCTG
129 GGCCCAGTCCCCCTACATGCCGTCGATCCTG
10564634 TTACCATAAC
Statistics
Matches: 138, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
192 1 0.01
193 132 0.96
194 5 0.04
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (193 bp):
GATCTTAGACTGGGAATGAACTCTATACGCTTAGACTGGAGATAAACTCCGTATGCCTAAGCCAA
CCCACGAAACGAGCGTGCGGGCGCTCAATCGATCGAAGAGGCAGAATGCGCAAGTCAGGGACCGG
CCCAGTCCCCCTACATGCCGTCGATCCTGCTGCTGGACCTGCTACCTCAACCCTTGATCCGCT
Found at i:10564770 original size:691 final size:693
Alignment explanation
Indices: 10563616--10565100 Score: 1838
Period size: 690 Copynumber: 2.1 Consensus size: 693
10563606 CGGCTGAGGA
* * * *
10563616 TTAGACATGGA-ATGAACACCGTATGCCTAAGCCAACCCACGAAACAAGTGTACGGGTGCTCAAC
1 TTAGAC-TGGAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAAC
* * * * * *
10563680 CGACCGGAGAGGCAGAATATGCAAGTTGGGGATCGGCTCGGTCCTTCCCTGCGTGCTATCGAACC
65 CGACCGGAGAGGCAGAATACGCAAGCTGGGGATCGGCCCAGTCC-TCCCTGCATGCCATCGAACC
* * * *
10563745 TGCTACTGGTCCTGCTATCGCAACCCTCGATCTGATCGGATCTTAGACTAGAAATGAACTCCGTA
129 TGCTACTGGACCTGCTACCGCAACCCTCGATCCGA-CGGATCTTAGACTAGAAATGAACTCCATA
* *
10563810 TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAACGTGCGAGCGCTCA
193 TGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAATGAACGTGCGAGCGCTCA
* * * * *
10563875 ACCGGTCGAGAGGCAAAATTCACAAGCCGGGGATCGACCTGGTCCCACCCTACGTGCTGTCGATC
258 ACCGATCGAGAGGCAAAATGCACAAGCCAGGGACCGACCCGGTCCCACCCTACGTGCTGTCGATC
* *
10563940 CTACTACCGCAACCCTCACTCCAATGCGATCTTAGACTAGAAATGAACTCCGTATGCCTAAGTCA
323 CTACTACCACAACCCTCACTCCAATCCGATCTTAGACTAGAAATGAACTCCGTATGCCTAAGTCA
* **
10564005 ACCCACGAAACAAGCGTGCGGGTGCTAAGCCGATCGTAGAGGCATAATGTGCAAGCCGAGGATCG
388 ACCCACGAAACAAGCGTGCGGGTGCTAAGCCGATCGGAGAGGCATAATCCGCAAGCCGAGGATCG
* *
10564070 GCCCGATCCCCCTCTGCGTGCCGTCGATCCGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGAC
453 ACCCGATCCCCCTCTGCGTGCCG-CGATCCGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGAA
* * * *
10564135 ATGGAATGAACTCCTTATGCCTAAGTCAACCCACGAAACGGGCGCGCGGGAGCTCAATCGGTCAG
517 ATGGAATGAACTCC-TATGCCTAAGCCAACCCACGAAACGGACGCGCGGCAGCTCAATCGATCAG
* *
10564200 AGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTGCATGCTGCCGATCCTGCTACCG
581 AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACATGCTGCCGATCCTGCTACCG
* *
10564265 CAACCCTCGGT-CGAT-TAGATCTTAGA-TTGGGAATGAACTCTATACGC
646 CAACCCTCAGTCCGATCT-GATCTTAGACTT-GGAATGAACTCCATACGC
* ** *
10564312 TTAGACTGGAGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAATC
1 TTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAACC
* * * * * *
10564377 GATCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCAGTCC-CCTTGCATGCCGTCGATCCTG
66 GACCGGAGAGGCAGAATACGCAAGCTGGGGATCGGCCCAGTCCTCCCTGCATGCCATCGAACCTG
* * * * * * *
10564441 CTGCTGGACCTGCTACCTCAACCCTTGATCCG-CTGATCTTAGACTGGGAATGAACTTCATATGC
131 CTACTGGACCTGCTACCGCAACCCTCGATCCGACGGATCTTAGACTAGAAATGAACTCCATATGC
* * * *
10564505 TTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAATC
196 TTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAATGAACGTGCGAGCGCTCAACC
* * * *
10564570 GATCGAAGAGGCAGAATGCGCAAGTCAGGGACCGGCCCGGT-CC-CCCTACGTGCTGTCGATCCT
261 GATCG-AGAGGCAAAATGCACAAGCCAGGGACCGACCCGGTCCCACCCTACGTGCTGTCGATCCT
** * * ** * * *
10564633 GTTACCATAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAAC
325 ACTACCACAACCCTCACTCCAATCCGATCTTAGACTAGAAATGAACTCCGTATGCCTAAGTCAAC
* ** * * *
10564698 CCACGAAACGAGCGTTTGGGTGCTGAGCC-AGTCGGAGAGGCATAATCCGCAAGTCGGGGATCGA
390 CCACGAAACAAGCGTGCGGGTGCTAAGCCGA-TCGGAGAGGCATAATCCGCAAGCCGAGGATCGA
* * * *
10564762 CCCGATCCCCCTCTGCGTGCTGCGGTCTGCTACCACAACCCTCAGTCCGGTTGGGGCTTAGAAAT
454 CCCGATCCCCCTCTGCGTGCCGCGATCCGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGAAAT
* * * * * * *
10564827 GGAATGACCTCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGCTGCTTAGTCGATCGGAGA
519 GGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGGACGCGCGGCAGCTCAATCGATCAGAGA
* * * * * * ** *
10564892 GGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCGCTACGTGCTGTCGATCTTGCTGTCGTAA
584 GGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACATGCTGCCGATCCTGCTACCGCAA
* * * *
10564957 CCTTCAGTCCGGTCTGATCTTAGACTTGGAATGAACTCCGTATGC
649 CCCTCAGTCCGATCTGATCTTAGACTTGGAATGAACTCCATACGC
* * ** *
10565002 TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGACGCTCAGCC
1 TTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAACC
* * *
10565067 GACCAGAGAGGCA-AGATGCGCAAGCCGGGGATCG
66 GACCGGAGAGGCAGA-ATACGCAAGCTGGGGATCG
10565101 AACGGGTGGT
Statistics
Matches: 669, Mismatches: 113, Indels: 20
0.83 0.14 0.02
Matches are distributed among these distances:
689 104 0.16
690 162 0.24
691 150 0.22
692 92 0.14
693 27 0.04
694 42 0.06
695 4 0.01
696 88 0.13
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (693 bp):
TTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAACC
GACCGGAGAGGCAGAATACGCAAGCTGGGGATCGGCCCAGTCCTCCCTGCATGCCATCGAACCTG
CTACTGGACCTGCTACCGCAACCCTCGATCCGACGGATCTTAGACTAGAAATGAACTCCATATGC
TTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAATGAACGTGCGAGCGCTCAACC
GATCGAGAGGCAAAATGCACAAGCCAGGGACCGACCCGGTCCCACCCTACGTGCTGTCGATCCTA
CTACCACAACCCTCACTCCAATCCGATCTTAGACTAGAAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACAAGCGTGCGGGTGCTAAGCCGATCGGAGAGGCATAATCCGCAAGCCGAGGATCGACC
CGATCCCCCTCTGCGTGCCGCGATCCGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGAAATGG
AATGAACTCCTATGCCTAAGCCAACCCACGAAACGGACGCGCGGCAGCTCAATCGATCAGAGAGG
CAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACATGCTGCCGATCCTGCTACCGCAACC
CTCAGTCCGATCTGATCTTAGACTTGGAATGAACTCCATACGC
Found at i:10564796 original size:157 final size:155
Alignment explanation
Indices: 10564504--10565001 Score: 545
Period size: 157 Copynumber: 3.2 Consensus size: 155
10564494 ACTTCATATG
* * * *
10564504 CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAAT
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
* * *
10564569 CGATCGAAGAGGCAGAATGCGCAAGTCAGGGACCGGCCCGGTCCCCCTACGTGCTGTCGATCCTG
65 CGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTACGTGCTGTCGAT-CTG
*
10564634 TTACCATAACCCTCAGTCCGGTCCGAT
129 CTACCATAACCCTCAGTCCGGTCCGAT
** * ** *
10564661 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTTTGGGTGCTGAG-
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
* * * * * * *
10564725 CCAGTCGGAGAGGCATAATCCGCAAGTCGGGGATCGACCCGATCCCCCTCTGCGTGCTG-CGGTC
65 CGA-TCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGT-CCCC-CTACGTGCTGTCGATC
* ** **
10564789 TGCTACCACAACCCTCAGTCCGGTTGGGG
127 TGCTACCATAACCCTCAGTCCGGTCCGAT
* * * *
10564818 CTTAGAAATGGAATGACCTCC-TATGCCTAAGCCAACCCATGAAACG-GACGTGCGGCTGCTTAG
1 CTTAG-ACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-CGTGCGGGTGCTCAG
*
10564881 TCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCGCTACGTGCTGTCGATCT
64 TCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCC-CTACGTGCTGTCGATC-
** * * *
10564946 TGCTGTCGTAACCTTCAGTCCGGTCTGAT
127 TGCTACCATAACCCTCAGTCCGGTCCGAT
10564975 CTTAGACTTGGAATGAACTCCGTATGC
1 CTTAGAC-TGGAATGAACTCCGTATGC
10565002 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 55, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
155 14 0.05
156 75 0.27
157 163 0.59
158 14 0.05
159 9 0.03
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (155 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGTC
GATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTACGTGCTGTCGATCTGCT
ACCATAACCCTCAGTCCGGTCCGAT
Found at i:10565004 original size:26 final size:26
Alignment explanation
Indices: 10564975--10565027 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10564965 CCGGTCTGAT
*
10564975 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10565001 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10565027 C
1 C
10565028 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10566081 original size:160 final size:158
Alignment explanation
Indices: 10565723--10566166 Score: 486
Period size: 160 Copynumber: 2.8 Consensus size: 158
10565713 AACTCCGTAT
* * *
10565723 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
10565788 CCGACCGGAGAGGCAGAATGCGCAAG-TCAGGGACCG-ACTCGATCCCCCCTACGTGCTGTCAAT
66 CCGACCGGAGAGGCAGAATGCGCAAGCT-GGGGATCGCCCT-GATCCCCCCTACGTGCTGCCGAT
* *
10565851 CCTGCTGCCGCAACCCTCAGTCTGGTCCGA
129 CCAGCTGCCACAACCCTCAGTCTGGTCCGA
* * * * * * *
10565881 TCTTAGGC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
10565945 G-CTAGCCGGAGACGCATAATGCGCAAGCTGGGGATCTGCCCTGATCCCCCTCTACGTGCTGCCG
65 GCCGA-CCGGAGAGGCAGAATGCGCAAGCTGGGGATC-GCCCTGATCCCCC-CTACGTGCTGCCG
* ** * *
10566009 GTCCAGCTGCCACAACCCTTGGTCTGG-CTGGG
127 ATCCAGCTGCCACAACCCTCAGTCTGGTC-CGA
* *
10566041 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
10566106 CCGATCGAAGAGGCAGAATGCGCAATCCGGGGATCGACCC-GGTCCCCCCTACGTGCTGCCG
66 CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCG-CCCTGATCCCCCCTACGTGCTGCCG
10566167 CAACCCTCAA
Statistics
Matches: 234, Mismatches: 42, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
157 3 0.01
158 91 0.39
159 19 0.08
160 118 0.50
161 3 0.01
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGCCCTGATCCCCCCTACGTGCTGCCGATCC
AGCTGCCACAACCCTCAGTCTGGTCCGA
Found at i:10567258 original size:26 final size:26
Alignment explanation
Indices: 10567222--10567274 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10567212 CCGGTTCGAT
* *
10567222 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10567248 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10567274 C
1 C
10567275 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10567459 original size:26 final size:26
Alignment explanation
Indices: 10567430--10567482 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10567420 CCGGTCCGAT
10567430 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
10567456 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10567482 C
1 C
10567483 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10567965 original size:26 final size:26
Alignment explanation
Indices: 10567929--10567981 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10567919 CCGATCCGAT
10567929 CTTAAACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
10567955 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
10567981 C
1 C
10567982 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:10568540 original size:25 final size:26
Alignment explanation
Indices: 10568490--10568541 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
10568480 CTGGTCTGAT
*
10568490 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10568516 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10568541 C
1 C
10568542 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10568993 original size:26 final size:26
Alignment explanation
Indices: 10568964--10569016 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10568954 CCGATTCGAT
10568964 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
10568990 CTTAGACTGGGGATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10569016 C
1 C
10569017 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10569179 original size:185 final size:183
Alignment explanation
Indices: 10568879--10569219 Score: 499
Period size: 185 Copynumber: 1.9 Consensus size: 183
10568869 AGCGGGCCGG
* * * * *
10568879 AGAGGCAGAATGCGCAAGCCAGGGATCGGCCTAGTCCCCCTGTGTGTTGTTGATCCTGCTGCTGC
1 AGAGGCAGAATGCGCAAGCCAGGGATCGCCCGAGTCCCCCTGTGTGCTGTTGATCCTGCTACCGC
* * * *
10568944 AACCTTAAATCCGATTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAGCT
66 AACCCTAAATCCGATTCGATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGAGGATGAACT
10569009 CCGTATGCCTAAGTCAACCCATGAAATGAACGAGCGAGCACTCGGCCAGTCGA
131 CCGTATGCCTAAGTCAACCCATGAAATGAACGAGCGAGCACTCGGCCAGTCGA
*
10569062 AGAGGCAGAATGTGCAAGCC-GGTGATCAGCCCGA-TCCCCCCTGTGTGCTGTTGATCCTGCTAC
1 AGAGGCAGAATGCGCAAGCCAGG-GATC-GCCCGAGT-CCCCCTGTGTGCTGTTGATCCTGCTAC
***
10569125 CGCAACCCTCGGTCCGGA-TCTGATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGAGGAT
63 CGCAACCCTAAATCC-GATTC-GATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGAGGAT
10569189 GAACTCCGTATGCCTAAGTCAACCCATGAAA
126 GAACTCCGTATGCCTAAGTCAACCCATGAAA
10569220 CAAGCGTACG
Statistics
Matches: 140, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
182 2 0.01
183 24 0.17
184 41 0.29
185 73 0.52
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.23
Consensus pattern (183 bp):
AGAGGCAGAATGCGCAAGCCAGGGATCGCCCGAGTCCCCCTGTGTGCTGTTGATCCTGCTACCGC
AACCCTAAATCCGATTCGATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGAGGATGAACT
CCGTATGCCTAAGTCAACCCATGAAATGAACGAGCGAGCACTCGGCCAGTCGA
Found at i:10569193 original size:26 final size:26
Alignment explanation
Indices: 10569149--10569201 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10569139 CGGATCTGAT
10569149 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
10569175 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATAAACTCCGTATG
10569201 C
1 C
10569202 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:10570037 original size:26 final size:26
Alignment explanation
Indices: 10569996--10570048 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10569986 CTGGTTTGAT
10569996 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10570022 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
10570048 C
1 C
10570049 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10570759 original size:26 final size:26
Alignment explanation
Indices: 10570721--10570771 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
10570711 CTCAAACTCC
*
10570721 TAGACTGGAAATGAACTCTGTATGCT
1 TAGACTGGAAATGAACTCCGTATGCT
10570747 TAGACATGG-AATGAACTCCGTATGC
1 TAGAC-TGGAAATGAACTCCGTATGC
10570772 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGACTGGAAATGAACTCCGTATGCT
Found at i:10571050 original size:158 final size:158
Alignment explanation
Indices: 10570744--10571031 Score: 393
Period size: 158 Copynumber: 1.8 Consensus size: 158
10570734 AACTCTGTAT
* *
10570744 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* *
10570809 ACGAGCGGAGAGGCAGAATGCGCAAGCTGAGGATCGCCCGGTCCCTCTCTGCATGCTGTCGGTCC
66 ACGAGCGGAGAGGCAGAATGCGCAAGCAGAGGATCGCCCGGTCCCTCTCTGCATGCTGTCGATCC
* *
10570874 CGCTACCACTACCCTCGGTCCAGCTGGG
131 CACTACCACAACCCTCGGTCCAGCTGGG
* * *
10570902 GCTTATACATGGAATAAACTCCCTATGCCTAAGCTAACCCATGAAACGGGCGTGCGGGCGCTCA-
1 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * ** *
10570966 ACCGATCGGAGAGTCCGAATGCGCAAGCCAG-GGATCGACCCGGTCCC-CTCTGTGTGTTGTCGA
66 A-CGAGCGGAGAGGCAGAATGCGCAAG-CAGAGGATCG-CCCGGTCCCTCTCTGCATGCTGTCGA
10571029 TCC
128 TCC
10571032 TATTATCGCA
Statistics
Matches: 114, Mismatches: 13, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
157 1 0.01
158 102 0.89
159 11 0.10
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
ACGAGCGGAGAGGCAGAATGCGCAAGCAGAGGATCGCCCGGTCCCTCTCTGCATGCTGTCGATCC
CACTACCACAACCCTCGGTCCAGCTGGG
Found at i:10571074 original size:158 final size:158
Alignment explanation
Indices: 10570744--10571087 Score: 381
Period size: 158 Copynumber: 2.2 Consensus size: 158
10570734 AACTCTGTAT
10570744 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* *
10570809 ACGAGCGGAGAGGCAGAATGCGCAAGCTGAGGATCGCCCGGTCCCTCTCTGCATGCTGTCGGTCC
66 ACGAGCGGAGAGGCAGAATGCGCAAGCAGAGGATCGCCCGGTCCCTCTCTGCATGCTGTCGATCC
* * * *
10570874 CGCTACCACTACCCTCGGTCCAGCTGGG
131 CACTACCACAACCCTCGGTCCAGCTCGA
* * * * *
10570902 GCTTATACATGGAATAAACTCCCTATGCCTAAGCTAACCCATGAAACGGGCGTGCGGGCGCTCA-
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * ** *
10570966 ACCGATCGGAGAGTCCGAATGCGCAAGCCAG-GGATCGACCCGGTCCC-CTCTGTGTGTTGTCGA
66 A-CGAGCGGAGAGGCAGAATGCGCAAG-CAGAGGATCG-CCCGGTCCCTCTCTGCATGCTGTCGA
* * * * * *** *
10571029 TCCTATTATCGCAACCGTCGGTTTGGTTCGA
128 TCCCACTACCACAACCCTCGGTCCAGCTCGA
*
10571060 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
10571088 TTAGACTTGG
Statistics
Matches: 152, Mismatches: 30, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
157 2 0.01
158 139 0.91
159 11 0.07
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
ACGAGCGGAGAGGCAGAATGCGCAAGCAGAGGATCGCCCGGTCCCTCTCTGCATGCTGTCGATCC
CACTACCACAACCCTCGGTCCAGCTCGA
Found at i:10571413 original size:159 final size:158
Alignment explanation
Indices: 10571174--10571473 Score: 361
Period size: 159 Copynumber: 1.9 Consensus size: 158
10571164 TCTTAGATTG
* * * * * **
10571174 GGAATGAACTCCTTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTGAGCCGATCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCAAAG
* ** * * * *
10571239 AGGCATAATGCGCAAGCTGGGGATTGGCTCGGTCCCCCTCTGCATGCTATCGGTCCTGCTGCCAC
66 AGGCAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCCC-CTGCATGCTACCGATCCTGCTACCAC
10571304 AACCCTCAGTCCAGTTGGGGCTTAGACAT
130 AACCCTCAGTCCAGTTGGGGCTTAGACAT
* *
10571333 GGAATGAACTCCCTATGCCTAAGCCGACCCACGAAACG-GATGTGCGGGCACTCAGCCTG-CCAA
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCACTCAGCC-GACCAA
* * ** * *
10571396 AGAGGTAGAATGTGCAAGCCAGGGATCGGCTCGGTCCTGCCTGCATGCTACCGATCCTGCTATCG
64 AGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCCTGCATGCTACCGATCCTGCTACCA
10571461 CAACCCTCAGTCC
129 CAACCCTCAGTCC
10571474 GATCTGATCT
Statistics
Matches: 117, Mismatches: 22, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
158 34 0.29
159 82 0.70
160 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCAAAG
AGGCAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCCTGCATGCTACCGATCCTGCTACCACA
ACCCTCAGTCCAGTTGGGGCTTAGACAT
Found at i:10571518 original size:26 final size:26
Alignment explanation
Indices: 10571482--10571534 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10571472 CCGATCTGAT
*
10571482 CTTAGATTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
* *
10571508 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
10571534 C
1 C
10571535 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:10571696 original size:26 final size:26
Alignment explanation
Indices: 10571667--10571719 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10571657 CCAGTCTGAT
*
10571667 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
10571693 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10571719 C
1 C
10571720 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10571698 original size:185 final size:181
Alignment explanation
Indices: 10571323--10571877 Score: 562
Period size: 185 Copynumber: 3.0 Consensus size: 181
10571313 TCCAGTTGGG
* * * * *
10571323 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCGACCCACGAAACG-GATGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTACGAGCACTCA
* * * * * * * * *
10571387 GCCTGCCAAAGAGGTAGAATGTGCAAGCCAGGGAT-CGGCTCGGTCCTGCCTGCATGCTACCGAT
65 GTCGGCCAAAGAGGCAGAATGCGCAAGCC-GGGGTCCGACCCGGTCC-CCCTGCATGCTATCGAT
* * *
10571451 CCTGCTATCGCAACCCTCAGTCCGATCTGATCTTAGATTGGGAATGAACTCAGTAT
128 CCTGCTGTCGCAA-CCTCAGTCCG-TCTGATCTTAGACTGGGAATGAACTCTGTAT
* * ** * * * *
10571507 GCTTAGAC-TGGGGATGAACTCTGTATGCCTAAGTTAACCCACGAAATGAGCGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCACTCA
* ** * * * ** *
10571571 G-CTGGTCGGAGAGGCAGAATGCGTAAGCCGGGGAT-TGGCCCGGTCCCCCCTTGTGTGCTGTCG
65 GTC-GGCCAAAGAGGCAGAATGCGCAAGCCGGGG-TCCGACCCGGT-CCCCC-TGCATGCTATCG
* *
10571634 ATCCTACTGTCGCAAGCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTAT
126 ATCCTGCTGTCGCAA-CCTCAGTCC-GTCTGATCTTAGACTGGGAATGAACTCTGTAT
10571692 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCACTCAG
* * *
10571757 TCGGCCAAAGAGGTAGAATGCGCAAGTCGGGGTCCGACCCGGTCCCCCTGCATGCTATTGATCCT
66 TCGGCCAAAGAGGCAGAATGCGCAAGCCGGGGTCCGACCCGGTCCCCCTGCATGCTATCGATCCT
* * *
10571822 GCTGCCACAACCGTCAGTCTGGTCTGATCTTTAGACTGGGAATGAACTCTGTAT
131 GCTGTCGCAACC-TCAGTC-CGTCTGATC-TTAGACTGGGAATGAACTCTGTAT
10571876 GC
1 GC
10571878 CTAAGTCAAC
Statistics
Matches: 303, Mismatches: 55, Indels: 26
0.79 0.14 0.07
Matches are distributed among these distances:
182 2 0.01
183 38 0.13
184 113 0.37
185 147 0.49
186 3 0.01
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.22
Consensus pattern (181 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCACTCAG
TCGGCCAAAGAGGCAGAATGCGCAAGCCGGGGTCCGACCCGGTCCCCCTGCATGCTATCGATCCT
GCTGTCGCAACCTCAGTCCGTCTGATCTTAGACTGGGAATGAACTCTGTAT
Found at i:10572237 original size:26 final size:25
Alignment explanation
Indices: 10572202--10572250 Score: 80
Period size: 26 Copynumber: 1.9 Consensus size: 25
10572192 ATCTGATCTT
10572202 AGACTGGAATGAACTCCATATGCTC
1 AGACTGGAATGAACTCCATATGCTC
*
10572227 AGACATGGAATGAACTCCGTATGC
1 AGAC-TGGAATGAACTCCATATGC
10572251 CTAAGCCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.22
Consensus pattern (25 bp):
AGACTGGAATGAACTCCATATGCTC
Found at i:10572532 original size:157 final size:158
Alignment explanation
Indices: 10572227--10572584 Score: 388
Period size: 157 Copynumber: 2.3 Consensus size: 158
10572217 CCATATGCTC
* * * * ** *
10572227 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTTAGCCAG
1 AGACATGGAACGAACTCCATATGCCTAAGCCAACCCACGAAACAAACGTACGGGCGCGGAGCCAA
* *
10572292 CCGGAGACGCAAAATGCGCAAGCTGGGGACCAGCCCATCCCCCCCTGTGTGCTGTCGATCCTGCT
66 CCGGAGACGCAAAATGCGCAAGCTGGGGACCAGCCCATCCCCCCCTGCGTGCTGTCGATCCCGCT
* *
10572357 GTCGCAACCCTCGATCTGGTCTGATGTT
131 GCCACAACCCTCGATCTGGTCTGATGTT
*
10572385 AGACA-GGAACGAACTCCATATGCCTAAGTCAA-CCACGAAACAAACGTACGGGCGCGGAGCCAA
1 AGACATGGAACGAACTCCATATGCCTAAGCCAACCCACGAAACAAACGTACGGGCGCGGAGCCAA
* * * * * * * * *
10572448 TCGGAGAGGCATAATGCGCAAG-TCGGTGATCGGCCCGATCCCCCTCTGCGTGCTGTTGGTCCCG
66 CCGGAGACGCAAAATGCGCAAGCT-GGGGACCAGCCC-ATCCCCCCCTGCGTGCTGTCGATCCCG
* *
10572512 CTGCCACAACCCTC-AGTCTGG-CT-AGGGCTC
129 CTGCCACAACCCTCGA-TCTGGTCTGA-TG-TT
* *
10572542 AGACATGGAATGAACT-CATTATGCCTAAGCCAACCCATGAAAC
1 AGACATGGAACGAACTCCA-TATGCCTAAGCCAACCCACGAAAC
10572585 GGGAGTGCAG
Statistics
Matches: 166, Mismatches: 26, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
155 2 0.01
156 58 0.35
157 71 0.43
158 27 0.16
159 8 0.05
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (158 bp):
AGACATGGAACGAACTCCATATGCCTAAGCCAACCCACGAAACAAACGTACGGGCGCGGAGCCAA
CCGGAGACGCAAAATGCGCAAGCTGGGGACCAGCCCATCCCCCCCTGCGTGCTGTCGATCCCGCT
GCCACAACCCTCGATCTGGTCTGATGTT
Found at i:10572713 original size:26 final size:26
Alignment explanation
Indices: 10572682--10572737 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
10572672 TCGATCTGAT
*
10572682 CTTAGACTGGGAATGAACTCCATCTG
1 CTTAGACTGGGAATGAACTCCATATG
* *
10572708 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10572734 CTTA
1 CTTA
10572738 AATCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10573442 original size:26 final size:26
Alignment explanation
Indices: 10573404--10573456 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10573394 GGCTCAAACT
* *
10573404 CTTAGACTGGGAATGAAGTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10573430 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10573456 C
1 C
10573457 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10573801 original size:158 final size:159
Alignment explanation
Indices: 10573431--10573811 Score: 487
Period size: 159 Copynumber: 2.4 Consensus size: 159
10573421 GTTCGTATGC
* *
10573431 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAACC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCC
** * * * * * * * *
10573496 GGTCGGAAAGGTAGAATGCACAAGCCGGGGATTGGCTCGGTCCCCTTCTGCGTGCTGCCAATCCC
66 CATCGGAAAGGCAGAATGAACAAGCCAGAGATCGGCCCGCTCCCCTTCTGCGTGATGCCAATCCC
* *
10573561 ACTGCCACAACCCTCGGTCCAGCTGGGGC
131 ACTGCCACAACCCTCGGTCCAGCTGGAGA
* *
10573590 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCC
* * *
10573655 CATCGGAGAGGCAGAATGAACAAGCCAGAGATCGGCCCGCTCCCC-TCTGCGTGATGCCGATCCT
66 CATCGGAAAGGCAGAATGAACAAGCCAGAGATCGGCCCGCTCCCCTTCTGCGTGATGCCAATCCC
* * * * * *
10573719 GCTGCCACAACCTTCGGTCTAGTTTGATA
131 ACTGCCACAACCCTCGGTCCAGCTGGAGA
* * *
10573748 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
10573812 TAATTTGGTA
Statistics
Matches: 191, Mismatches: 30, Indels: 3
0.85 0.13 0.01
Matches are distributed among these distances:
157 1 0.01
158 94 0.49
159 96 0.50
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (159 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCC
CATCGGAAAGGCAGAATGAACAAGCCAGAGATCGGCCCGCTCCCCTTCTGCGTGATGCCAATCCC
ACTGCCACAACCCTCGGTCCAGCTGGAGA
Found at i:10574701 original size:26 final size:26
Alignment explanation
Indices: 10574672--10574723 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10574662 CTGTTCGATG
10574672 TTAGACAGGGAATGAACT-CTGTATGC
1 TTAGACAGGGAATGAACTAC-GTATGC
*
10574698 TTAGACATGGAATGAACTACGTATGC
1 TTAGACAGGGAATGAACTACGTATGC
10574724 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACAGGGAATGAACTACGTATGC
Found at i:10575145 original size:515 final size:502
Alignment explanation
Indices: 10574166--10575251 Score: 1188
Period size: 515 Copynumber: 2.1 Consensus size: 502
10574156 ATACGACACT
* * * * *
10574166 GGGAATGAACTCCGTAAGCTTAGACATGGAATGAACTTCGTATGGCTAAGCCAACCCACAAAACG
1 GGGAATGAACTCTGTATGCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACG
* * * * ** *
10574231 AGCG-AGCGGGTGCTCAGCTGGTCAGAGAGGCAGAATGTGCAAGTTGGGGACTAGGCCGGTCCCT
66 AGCGTAGCGAGTGCTCACCAGATCAGAGAGGCAGAATGTGCAAGCCGAGGACTAGGCCGGTCCCT
* * *
10574295 CCTACGTGCTGTCGATCCTACTGGCACAACCCTCAGTTCAGTCTGATCTTAGACTACGAATGAAC
131 CCTACGTGCTGTCGAACCTACTGGCACAACCCTCAGTCCAGTCTAATCTTAGACTACGAATGAAC
* * * *
10574360 TCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCACTGAACTGATCGGAGAGGCATAAT
196 TCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTGAACCGACCGAAGAGGCATAAT
* * * ** * * *
10574425 GCGTAAGCCGAGGATAGACCCGATCCCCCTTTGTGTGCTGTCGGTCCCGCTGCCACTACCTTCGG
261 GCGCAAGCCGAGGATAGACCCGATCCCCCTCTGAGTGCTACCGGTCCCGCTGCCACAACCCTCAG
* ** *
10574490 TCCAGCTGGGGCTCAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTAC
326 TCCAGCTGGGGCTCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAAGAGCGTAC
* * * * * * *
10574555 GGGTGGTCAGTCGACTGGAGAGGTAGAATGTGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTG
391 GGGCGCTCAGTCGACTGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTG
* * *
10574620 CTACCGATCCTGCTGTAGGTCCTGCTCATGCAACACTCGATCCT-GTTCGATGTTAGACA
456 CTACCGATCCT-AT-TA--T-C-G----T--AACACTCGAT-CTGGTCCGATCTTAGACA
10574679 GGGAATGAACTCTGTATGCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACG
1 GGGAATGAACTCTGTATGCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACG
* * *
10574744 AGCGTA-CGAGTGCTCAACCAGATCGGAGAGGTAGAATGTGCAAGCCGAGGA-TCGGCTCGGTCC
66 AGCGTAGCGAGTGCTC-ACCAGATCAGAGAGGCAGAATGTGCAAGCCGAGGACTAGGC-CGGTCC
* * * * ** * * **
10574807 C-CCTTTGCGTGCTGTCGAACTTGCTGTCGTAACCCTCGGTCC-GATCTAATCTTAGATTGGGAA
129 CTCC--TACGTGCTGTCGAACCTACTGGCACAACCCTCAGTCCAG-TCTAATCTTAGACTACGAA
* * ** *
10574870 TTAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGGGCTGAGCCGACCGAAGAGGC
191 TGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTGAACCGACCGAAGAGGC
* * *
10574935 ATAATGCGCAAGCCGGGGATCAG-CCCGGTCCCCCTCTGCAG-GCTACCGGTCTCGCTGCCACAA
256 ATAATGCGCAAGCCGAGGAT-AGACCCGATCCCCCTCTG-AGTGCTACCGGTCCCGCTGCCACAA
** *
10574998 CCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACA
319 CCCTCAGTCCAGCTGGGGCTCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAA-A
* *
10575063 G-GCGTGCGGGCGCTCAGCTTG-CTGAAGAGGCAGAATGCGCAAGCC-AGGGATCGACCCGATCC
383 GAGCGTACGGGCGCTCAG-TCGACTGAAGAGGCAGAATGCGCAAGCCGA-GGATCGACCCGATCC
* ** * * *
10575125 CCCCTGCGTGTTGTCGATCCTATTATCGTAACCCTCGGTCTGGTCCGATCTTAGACT
446 CCCCTGCGTGCTACCGATCCTATTATCGTAACACTCGATCTGGTCCGATCTTAGACA
* * *
10575182 GGGAATGAACTCTGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT
1 GGGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTACGTATGCCTAAGCCAACCCACGAAAC
10575246 GAGCGT
65 GAGCGT
10575252 TCATGCGCTT
Statistics
Matches: 484, Mismatches: 76, Indels: 36
0.81 0.13 0.06
Matches are distributed among these distances:
502 3 0.01
503 85 0.18
505 1 0.00
509 1 0.00
510 1 0.00
511 1 0.00
513 80 0.17
514 38 0.08
515 268 0.55
516 6 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.21
Consensus pattern (502 bp):
GGGAATGAACTCTGTATGCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACG
AGCGTAGCGAGTGCTCACCAGATCAGAGAGGCAGAATGTGCAAGCCGAGGACTAGGCCGGTCCCT
CCTACGTGCTGTCGAACCTACTGGCACAACCCTCAGTCCAGTCTAATCTTAGACTACGAATGAAC
TCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTGAACCGACCGAAGAGGCATAAT
GCGCAAGCCGAGGATAGACCCGATCCCCCTCTGAGTGCTACCGGTCCCGCTGCCACAACCCTCAG
TCCAGCTGGGGCTCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAAGAGCGTAC
GGGCGCTCAGTCGACTGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTG
CTACCGATCCTATTATCGTAACACTCGATCTGGTCCGATCTTAGACA
Found at i:10575203 original size:26 final size:26
Alignment explanation
Indices: 10575174--10575226 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10575164 CTGGTCCGAT
*
10575174 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10575200 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10575226 C
1 C
10575227 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10576428 original size:26 final size:26
Alignment explanation
Indices: 10576399--10576451 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10576389 CCAGTCCGAT
10576399 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10576425 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10576451 C
1 C
10576452 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10577197 original size:158 final size:158
Alignment explanation
Indices: 10576789--10577290 Score: 485
Period size: 158 Copynumber: 3.2 Consensus size: 158
10576779 AAGTTCGTAT
* * * *
10576789 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACGCACAAAATGAGCGTACGGGCACTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAATGAGCGTACGGGCGCTCAG
* * * * * * *
10576854 TCGATCGGAGAGGCAAAATGTGTAAGTCGGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCT
66 CCGACCGGAGAGGCAAAATGCGAAAGTCGGGGATCGGCCCGGTCCCCCCTACGTGCTGCCGATCC
* * *
10576919 TGCTGCCACAACTCTCGGTGCGGCCTGA
131 CGCTGCCACAACCCTCGATGCGGCCTGA
* * * * * * * * *
10576947 TCTTAGAC-TAGGAATGAACTTCGTATGCCTAAGTCAACAAACGAAACGAGCATCCGAGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACACACGAAATGAGCGTACGGGCGCTCA
** * * * *
10577011 GCTAACCGAAGAGGCATAATGCGAAAGTCGGGGATCGGCCCGGTCCCCTTCTACGTGTTGCCGAT
65 GCCGACCGGAGAGGCAAAATGCGAAAGTCGGGGATCGGCCCGGTCCCC-CCTACGTGCTGCCGAT
*
10577076 CCCGCTGCCACAACCCTCGAT-CTGG-CTGGG
129 CCCGCTGCCACAACCCTCGATGC-GGCCT-GA
* * *
10577106 GCTTAGACATGGAATGAACTCCCTATGCCTAAG-CAACCCACGAAATGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAATGAGCGTACGGGCGCTCAG
* * * * * * *
10577170 CCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACTCGGTCACCCCT-CTGTCCTGTCGATC
66 CCGACCGGAGAGGCAAAATGCGAAAGTCGGGGATCGGCCCGGTCCCCCCTAC-GTGCTGCCGATC
* * * * **
10577234 CTGCTGTCGCAACCCTCGATCCGATCTGA
130 CCGCTGCCACAACCCTCGATGCGGCCTGA
*
10577263 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
10577291 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 59, Indels: 19
0.78 0.17 0.05
Matches are distributed among these distances:
156 2 0.01
157 55 0.20
158 157 0.57
159 61 0.22
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAATGAGCGTACGGGCGCTCAG
CCGACCGGAGAGGCAAAATGCGAAAGTCGGGGATCGGCCCGGTCCCCCCTACGTGCTGCCGATCC
CGCTGCCACAACCCTCGATGCGGCCTGA
Found at i:10577293 original size:26 final size:26
Alignment explanation
Indices: 10577264--10577316 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10577254 CCGATCTGAT
10577264 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10577290 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10577316 C
1 C
10577317 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10577585 original size:354 final size:354
Alignment explanation
Indices: 10577079--10577721 Score: 985
Period size: 354 Copynumber: 1.8 Consensus size: 354
10577069 TGCCGATCCC
10577079 GCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCAACC
1 GCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCAACC
* * * *
10577144 CACGAAATGGGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACT
66 CACGAAACGAGCGCACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACT
* *
10577209 CGGTCACCCCTCTGTCCTGTCGATCCTGCTG-TCGCAACCCTCGATCCGATCTGATCTTAGACTG
131 CGGTCACCCCTCTGTCCTGTCGATCCTGCTGCT-GCAACCCTCGATCCGATCCGAACTTAGACTG
*
10577273 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
195 GGAATGAACTCCGTATGCTTAGAATGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
*
10577338 GCCTGCGGGCGT-TCAGCCGACCGGGGAGGCATAATGCGCAAGCTGGGGATCAGCCCGATCCACT
260 GCCTGCGGGC-TCTCAGCCGACCGGAGAGGCATAATGCGCAAGCTGGGGATCAGCCCGATCCACT
10577402 TCTATGTGCTGTAGGTCCCACTTTCGGTCCT
324 TCTATGTGCTGTAGGTCCCACTTTCGGTCCT
* * **
10577433 GCTGCCATAACCCTCGGTAC-GGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
1 GCTGCCACAACCCTCGAT-CTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG-CAA
* *
10577497 -CCACGAAACGAGCGCGCGGGCGCTCAGCC-AGCCGGAGGGGCAGAATGCGCAAGTCGAGGATCG
64 CCCACGAAACGAGCGCACGGGCGCTCAGCCGA-CCGGAGAGGCAGAATGCGCAAGTCGAGGATCG
* * * *
10577560 -GTCTGGTCCCCCCTAC-GTGCTGTCGATCCTGCTGCTGCAGCCCTCGATCCGATCCGAACTTAG
128 ACTC-GGTCACCCCT-CTGTCCTGTCGATCCTGCTGCTGCAACCCTCGATCCGATCCGAACTTAG
10577623 ACTGGGAATGAACTCCGTATGCTTAGAATGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAA
191 ACTGGGAATGAACTCCGTATGCTTAGAATGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAA
* * *
10577688 ACGAGCGTGTGGGCTCTCAGTCGACCGGAGAGGC
256 ACGAGCCTGCGGGCTCTCAGCCGACCGGAGAGGC
10577722 CAGTCGGAGA
Statistics
Matches: 261, Mismatches: 21, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
353 4 0.02
354 251 0.96
355 6 0.02
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (354 bp):
GCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCAACC
CACGAAACGAGCGCACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACT
CGGTCACCCCTCTGTCCTGTCGATCCTGCTGCTGCAACCCTCGATCCGATCCGAACTTAGACTGG
GAATGAACTCCGTATGCTTAGAATGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
CCTGCGGGCTCTCAGCCGACCGGAGAGGCATAATGCGCAAGCTGGGGATCAGCCCGATCCACTTC
TATGTGCTGTAGGTCCCACTTTCGGTCCT
Found at i:10577647 original size:26 final size:26
Alignment explanation
Indices: 10577618--10577670 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10577608 CCGATCCGAA
*
10577618 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
10577644 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
10577670 C
1 C
10577671 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:10578021 original size:26 final size:26
Alignment explanation
Indices: 10577992--10578044 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10577982 CTGGTTCGAT
*
10577992 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
10578018 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10578044 C
1 C
10578045 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10579358 original size:159 final size:157
Alignment explanation
Indices: 10578928--10579423 Score: 428
Period size: 159 Copynumber: 3.1 Consensus size: 157
10578918 TATGCTCAGG
* * * *
10578928 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGTGTGCGGGCACTCAGCCGGTCG
1 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGCT-G
* * * * * *
10578993 AAGAGGTAGAATGC-ATAAGCCCGAGATCAGCTCGAT-CCCCCTGCGTGCTGTTGATCCTGCTGC
65 GAGAGGCAGAATGCGA-AAGCCGGAGATCAGCCCGGTCCCCCCTGCGTGCTGCTGATCCTGCTGC
* *
10579056 TACAACCCTCGATCCGGTCCAATCTTAGA
129 CACAACCCTCGATCCGGTCCAAGCTTAGA
* * * * * * *
10579085 CTAT-GAATTAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGACAGCC
1 C-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA-ACCGCT
* * * ** * * * * * * *
10579149 GGAGAGGCATAATGTGCAAGATGGCGATCAGCCCGGTCTCTCTCTACGTGCTGCTGGTCTTGTTG
64 GGAGAGGCAGAATGCGAAAGCCGGAGATCAGCCCGGTC-CCCCCTGCGTGCTGCTGATCCTGCTG
* ****
10579214 CCACAACCCTCGGTCCGGTTGGGGCTTAGA
128 CCACAACCCTCGATCCGGTCCAAGCTTAGA
* * * *
10579244 CATGGAATGAACTCCATATGCCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTTAACCGACT
1 CATGGAATGAACTCCGTATG-CCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCG-CT
*
10579309 GGAGAGGCAGAATGCGAAAGCCGGAGATCGGCCCGGTCCCCCCTGCGTGCTG-TCGATCCTGCTG
64 GGAGAGGCAGAATGCGAAAGCCGGAGATCAGCCCGGTCCCCCCTGCGTGCTGCT-GATCCTGCTG
** * * * *
10579373 CTGCAACCCTC-AGTCCGATTCGATCTTAGA
128 CCACAACCCTCGA-TCCGGTCCAAGCTTAGA
*
10579403 C-TGGGAATGAACTTCGTATGC
1 CAT-GGAATGAACTCCGTATGC
10579424 TTAGATTGGG
Statistics
Matches: 260, Mismatches: 68, Indels: 21
0.74 0.19 0.06
Matches are distributed among these distances:
157 72 0.28
158 9 0.03
159 116 0.45
160 63 0.24
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGCTGG
AGAGGCAGAATGCGAAAGCCGGAGATCAGCCCGGTCCCCCCTGCGTGCTGCTGATCCTGCTGCCA
CAACCCTCGATCCGGTCCAAGCTTAGA
Found at i:10579794 original size:26 final size:27
Alignment explanation
Indices: 10579765--10579822 Score: 93
Period size: 26 Copynumber: 2.2 Consensus size: 27
10579755 CCGGTCCGAT
10579765 CTTAGAC-TAGGAATGAACTCCGTATG-
1 CTTAGACAT-GGAATGAACTCCGTATGC
10579791 CTTAGACATGGAATGAACTCCGTATGC
1 CTTAGACATGGAATGAACTCCGTATGC
10579818 CTTAG
1 CTTAG
10579823 CCAACCCACG
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
26 24 0.80
27 6 0.20
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (27 bp):
CTTAGACATGGAATGAACTCCGTATGC
Found at i:10580092 original size:159 final size:159
Alignment explanation
Indices: 10579791--10580200 Score: 382
Period size: 159 Copynumber: 2.6 Consensus size: 159
10579781 ACTCCGTATG
*
10579791 CTTAGACATGGAATGAACTCCGTATGCCTTAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* ** * * *
10579856 CGGCCGGAGAGCCAGAATGCGTAAGCCAAGGAATGGCTCGGTCCCCCCTTGTGTGCTATCGATCC
66 CAGCCGGAGAGCCAGAATGCCCAAGCCAAGGAATGGCGCAGTCCCCCCTTGCGTGCTATCGATCC
* *
10579921 AACTGCCGCAACCCTCGGTCTGGTCTGAT
131 AACTACCACAACCCTCGGTCTGGTCTGAT
* * * * *
10579950 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * ** * *
10580014 CTAGCC-GA-AGCTGCATAATGCCCAAGCTGAGGATTGGCGCAGT-CCCCCTCTGCGTGCTGTCG
65 CCAGCCGGAGAGC--CAGAATGCCCAAGCCAAGGAATGGCGCAGTCCCCCCT-TGCGTGCTATCG
* ** * ** **
10580076 GTCCTGCTACCACAACCCTCAGTCCAG-CTAGGG
127 ATCCAACTACCACAACCCTCGGTCTGGTCT-GAT
* ** * * *
10580109 CTTAGACATGTAATGAACTCAC-TATGCCTAAGCCAAGACATGAAACGGGCGTGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * *
10580173 CCGGTCGGAGAGGCAGAATGCACAAGCC
65 CCAGCCGGAGAGCCAGAATGCCCAAGCC
10580201 GGGGATCGAC
Statistics
Matches: 198, Mismatches: 44, Indels: 18
0.76 0.17 0.07
Matches are distributed among these distances:
157 3 0.02
158 11 0.06
159 178 0.90
160 4 0.02
161 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
CAGCCGGAGAGCCAGAATGCCCAAGCCAAGGAATGGCGCAGTCCCCCCTTGCGTGCTATCGATCC
AACTACCACAACCCTCGGTCTGGTCTGAT
Found at i:10580296 original size:26 final size:26
Alignment explanation
Indices: 10580267--10580319 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10580257 CCGATTTGAT
10580267 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10580293 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10580319 C
1 C
10580320 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10580711 original size:697 final size:697
Alignment explanation
Indices: 10579754--10581041 Score: 1754
Period size: 697 Copynumber: 1.8 Consensus size: 697
10579744 CAACCCTCCA
*
10579754 TCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCC
1 TCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGCC
* * * * * * * *
10579819 TTAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCGGAGAGCCAGAATGCGTAAGCCA
66 TAAGCCAACCCACGAAACAAGCATACAGGCACTCAGCCGACCGAAGAGCCAGAATGCGCAAGCC-
* * ** *
10579884 AGGAATGGCTCGGTCCCCCCTTGTGTGCTATCGATCCAACTGCCGCAACCCTCGGTCTGGTCTGA
130 AGGAATGCCTCGATCCCCCCTTGCATGCTATCGATCCAACTGCCACAACCCTCGGTCTGGTCTGA
* * *
10579949 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAG
195 TCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTGAG
** * * * *
10580014 CT-AGCCGAAGCTGCATAATGCC-CAAG-CTGAGGATTGG-CGCAGTCCCCCTCTGCGTGCTGTC
260 CTGA-CCGAAGAGGCATAAT-CCGCAAGTCAG-GGATCGGTCG-A-TCCCCCTCTACGTGCTGCC
*
10580075 GGTCCTGCTACCACAACCCTCAGTCC-AGCT-AGGGCTTAGACAT-GTAATGAACTCACTATGCC
320 GGTCCCGCTACCACAACCCTCAGTCCGA-CTGA-GGCTTAGACATCG-AATGAACTCACTATGCC
* **
10580137 TAAGCCAAGACATGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCG
382 TAAGCCAA-ACATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCCG
* * ** **
10580202 GGGATCGACCCGAT-CCCCCCTACGTCCTGCCGATCCTGCTGCTGCAACCCTCGGTCCGATTTGA
446 GGGATCGACCCGATCCCCCCCTACATCCTGCAGATCCTGCTGCCACAACCCTCGGTCCGATCCGA
*
10580266 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
511 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACC
10580331 CAT-GAAACGAGCGTGTGGGCACTCAGTTAGCCAGAGAGGCAGAATGCACATGCCGAGTATAGGC
576 C-TCGAAACGAGCGTGTGGGCACTCAGTTAGCCAGAGAGGCAGAATGCACATGCCGAGTATAGGC
10580395 CTGGTCCCCCACTGCGTGCTGCCAATCCTGCTGTTGGTCTTACTACCGCAAGCCTCGG
640 CTGGTCCCCCACTGCGTGCTGCCAATCCTGCTGTTGGTCTTACTACCGCAAGCCTCGG
*
10580453 TCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGCC
1 TCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGCC
** * * * *
10580518 TAAGCCCTCCCATGAAACAAGCATACAGGCACTCAGCCGATCGAAGAGGCAGAGTGCGCAAGCC-
66 TAAGCCAACCCACGAAACAAGCATACAGGCACTCAGCCGACCGAAGAGCCAGAATGCGCAAGCCA
* ** * *
10580582 GGGATCGACCT-GATCCCCCC-TGCATGCTATCGATCCTGCTGCTATAACCCTCGGTCTGGTCTG
131 GGAAT-G-CCTCGATCCCCCCTTGCATGCTATCGATCCAACTGCCACAACCCTCGGTCTGGTCTG
* * * *
10580645 ATCTTACACTGGGAATGGACTTCGTATGCCTAAGTCAACCCACGAAATGAGTGTTCAGGCGCTGA
194 ATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTGA
*
10580710 GCTGACCGAAGAGGCATAATCCGCAAGTCAGGGATCGGTTCGATCCCCCTTTACGTGCTGCCGGT
259 GCTGACCGAAGAGGCATAATCCGCAAGTCAGGGATCGG-TCGATCCCCCTCTACGTGCTGCCGGT
* *
10580775 CCCGCTACCACAACCCTCGGTCCGACTGAGGCTTAGACATCGAATGAACTCCCTATGCCTAAGCC
323 CCCGCTACCACAACCCTCAGTCCGACTGAGGCTTAGACATCGAATGAACTCACTATGCCTAAGCC
* * * * * **
10580840 AACCTTGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGATTGCGCAAGGTGGGGATCG
388 AAACATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCG
* * * * * *
10580905 GCGCGATCCCCCCCTACATGCTGTAGATCTTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGA
453 ACCCGATCCCCCCCTACATCCTGCAGATCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGA
* *
10580970 CTGGGAATGAACTCCGTATGCTTAGACTATGGATGAGCTCCGTATGCCTAAGTCAACCCTCGAAA
518 CTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCTCGAAA
10581035 CGAGCGT
583 CGAGCGT
10581042 ACGGGTGCTC
Statistics
Matches: 509, Mismatches: 68, Indels: 26
0.84 0.11 0.04
Matches are distributed among these distances:
696 61 0.12
697 315 0.62
698 16 0.03
699 117 0.23
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (697 bp):
TCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGCC
TAAGCCAACCCACGAAACAAGCATACAGGCACTCAGCCGACCGAAGAGCCAGAATGCGCAAGCCA
GGAATGCCTCGATCCCCCCTTGCATGCTATCGATCCAACTGCCACAACCCTCGGTCTGGTCTGAT
CTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTGAGC
TGACCGAAGAGGCATAATCCGCAAGTCAGGGATCGGTCGATCCCCCTCTACGTGCTGCCGGTCCC
GCTACCACAACCCTCAGTCCGACTGAGGCTTAGACATCGAATGAACTCACTATGCCTAAGCCAAA
CATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACC
CGATCCCCCCCTACATCCTGCAGATCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTG
GGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCTCGAAACGA
GCGTGTGGGCACTCAGTTAGCCAGAGAGGCAGAATGCACATGCCGAGTATAGGCCTGGTCCCCCA
CTGCGTGCTGCCAATCCTGCTGTTGGTCTTACTACCGCAAGCCTCGG
Found at i:10580993 original size:26 final size:26
Alignment explanation
Indices: 10580964--10581016 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10580954 CCGGTCCGAT
10580964 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
* *
10580990 CTTAGACTATGGATGAGCTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
10581016 C
1 C
10581017 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:10581360 original size:26 final size:26
Alignment explanation
Indices: 10581323--10581383 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
10581313 CCCTCGATTC
10581323 AATCCG-AT-CTTAGACT-GGGAATGA
1 AATCCGTATGCTTAGACTAGGG-ATGA
*
10581347 AATCTGTATGCTTAGACTAGGGATGA
1 AATCCGTATGCTTAGACTAGGGATGA
*
10581373 ACTCCGTATGC
1 AATCCGTATGC
10581384 CTAAGTCAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 21 0.68
27 3 0.10
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (26 bp):
AATCCGTATGCTTAGACTAGGGATGA
Found at i:10581809 original size:868 final size:869
Alignment explanation
Indices: 10580595--10582176 Score: 2032
Period size: 868 Copynumber: 1.8 Consensus size: 869
10580585 ATCGACCTGA
* * * *
10580595 TCCCCCCTGCATGCTATCGATCCTGCTGCTATAACCCTCGGTCTGGTCTGATCTTACACTGGGAA
1 TCCCCCCTGCATGCTATCGATCCTGCTGCCACAACCCTCAGTCTGGTCTGATCTTACACTAGGAA
* * * * * * *
10580660 TGGACTTCGTATGCCTAAGTCAACCCACGAAATGAGTGTTCAGGCGCTGAGCTGACCGAAGAGGC
66 TGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTTCAAGCGCTGAACCGACCGAAGAGGC
* * *
10580725 ATAATCCGCAAGTCAGGGATCGGTTCGATCCCCCTTTACGTGCTGCCGGTCCCGCTACCACAACC
131 ATAATCCACAAGTCAGGGATCGGCTCGATCCCCCTTTACGTGCTACCGGTCCCGCTACCACAACC
* *
10580790 CTCGGTCCGACTGAGGCTTAGACATCGAATGAACTCCCTATGCCTAAGCCAACCTTGAAACGAGC
196 CTCGGTCCGACTGAGGCTTAGACATCGAATGAACTCCCTATGCCTAAGCCAACCATAAAACGAGC
* * * *** * *
10580855 GTGCGGGCGCTCAGTCGACCGGAGAGGCAGATTGCGCAAGGTGGGGATCGGCGCGATCCCCCCCT
261 GTGCAGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCCT
** * * *
10580920 ACATGCTGTAGATCTTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
326 ACATGCTCCAGATCCTGCTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGAGAATGAACTCC
* * * * * *
10580985 GTATGCTTAGACTATGGATGAGCTCCGTATGCCTAAGTCAACCCTCGAAACGAGCGTACGGGTGC
391 GTATGCTTAGACTAGGGATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTACGGGCGC
** * * * * *
10581050 TCAACCGGCTGGAGAGACTGACCGAAGAGGCATAATGCACAAGTCGAGGATCAGCTCGGTCCCCC
456 TCAACCAACCGGAGAGACCGACCGAAGAGGCATAATGCACAAGCCGAGGATCAGCCCGATCCCCC
* * ** **
10581115 TCTGCATGCTGTCGATCCCGCTGCCAATCTTGCTGCCACAACCCTCGGTTTGGTTGGGGCTTAGA
521 TCTGCATGCTGCCGATCCCGCTGCCAATCTTGCTACCACAACCCTCGGTCCGGCCGGGGCTTAGA
* * **
10581180 CATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAT-GAGCGTGCGGGTGCCCAACT-AGC
586 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACG-AATCAAGCGTGCGGGCACCC-ACTCAGC
*
10581243 CGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCTGGT-CCCCTTGCGTGCTACT-GATCCTGCT
649 CGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCTGGTCCCCCCTGCGTGCT-CTCGATCCTGCT
10581306 GCCGCAACCCTCGATTCAATCCGATCTTAGACTGGGAATGAAATCTGTATGCTTAGACTAGGGAT
713 GCCGCAACCCTCGATTCAATCCGATCTTAGACTGGGAATGAAATCTGTATGCTTAGACTAGGGAT
10581371 GAACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCGTTCAGCCGACCAGAGAAGCA
778 GAACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCGTTCAGCCGACCAGAGAAGCA
10581436 AAATGCGCAAGTCGGGGATCGGCTCGG
843 AAATGCGCAAGTCGGGGATCGGCTCGG
** * * *
10581463 TCCCCCCTGTGTGCTGTCGATCTTGCTGCCACAACCCTCAGTCTGGT-TCGATCTTAGACTAGGA
1 TCCCCCCTGCATGCTATCGATCCTGCTGCCACAACCCTCAGTCTGGTCT-GATCTTACACTAGGA
*
10581527 ATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGT-AAGCGCTGAACCGGCCGAAGAG
65 ATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGT-TCAAGCGCTGAACCGACCGAAGAG
* * * * * *
10581591 GCATAATGCACAAG-CTGGGGTTCGGCTCGATCCCCCTTTGCGTGCTACCGGTCCCGCTGCGACA
129 GCATAATCCACAAGTC-AGGGATCGGCTCGATCCCCCTTTACGTGCTACCGGTCCCGCTACCACA
* * * * * *
10581655 GCCCTCGGTCTGGCTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAAC
193 ACCCTCGGTCCGACTGAGGCTTAGACATCGAATGAACTCCCTATGCCTAAGCCAA-CCATAAAAC
* * * *
10581720 GGGCGTGCAGGCGCTCAGCC-AGTCGGAGAGGCAGAATGCGCAAGCCAGGGATTGACCCGGT-CC
257 GAGCGTGCAGGCGCTCAGCCGA-CCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCC
*** ** * *
10581783 CCCCTGTGTGCTACCA-ATCCTGCTGCCGTAACCCTCGATCCGGTCGGATCTTAGATTGAGAATG
321 CCCCTACATGCT-CCAGATCCTGCTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGAGAATG
* * * * *
10581847 AACTTCGTATGCTTAGACTGGGGATGAACTCCATATACGTAAGTCAACCCACGAAACGAGTGTGC
385 AACTCCGTATGCTTAGACTAGGGATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTAC
* * ** * * *
10581912 GGGCGCTCAGCTAACCGGAGTTACCGACCGGAGAGGCGTAATGCCCAAGCCGAGGATCAGCCCGA
450 GGGCGCTCAACCAACCGGAGAGACCGACCGAAGAGGCATAATGCACAAGCCGAGGATCAGCCCGA
* * * * **
10581977 TCCCCCTTTGCGTGCTGCCGATCTCGCTGTCGGTCTTGCTACCACAACCCTCGGTCCGGCCGGGG
515 TCCCCCTCTGCATGCTGCCGATCCCGCTGCCAATCTTGCTACCACAACCCTCGGTCCGGCCGGGG
* * * *
10582042 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAATCAAGTGTGCGGGCACTCAGT
580 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAATCAAGCGTGCGGGCACCCACT
* * * * *
10582107 CAGTCGGAGAGGCAGAATGTGCAAGTCGGGGATCGACCTGGTCCCCCCTGCGTGCTGTCGATCCT
645 CAGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCTGGTCCCCCCTGCGTGCTCTCGATCCT
10582172 GCTGC
710 GCTGC
10582177 TGGTCCTGCT
Statistics
Matches: 595, Mismatches: 109, Indels: 19
0.82 0.15 0.03
Matches are distributed among these distances:
867 7 0.01
868 509 0.86
869 79 0.13
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (869 bp):
TCCCCCCTGCATGCTATCGATCCTGCTGCCACAACCCTCAGTCTGGTCTGATCTTACACTAGGAA
TGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTTCAAGCGCTGAACCGACCGAAGAGGC
ATAATCCACAAGTCAGGGATCGGCTCGATCCCCCTTTACGTGCTACCGGTCCCGCTACCACAACC
CTCGGTCCGACTGAGGCTTAGACATCGAATGAACTCCCTATGCCTAAGCCAACCATAAAACGAGC
GTGCAGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCCT
ACATGCTCCAGATCCTGCTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGAGAATGAACTCC
GTATGCTTAGACTAGGGATGAACTCCATATACCTAAGTCAACCCACGAAACGAGCGTACGGGCGC
TCAACCAACCGGAGAGACCGACCGAAGAGGCATAATGCACAAGCCGAGGATCAGCCCGATCCCCC
TCTGCATGCTGCCGATCCCGCTGCCAATCTTGCTACCACAACCCTCGGTCCGGCCGGGGCTTAGA
CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAATCAAGCGTGCGGGCACCCACTCAGCCG
GAGAGGCAGAATGCGCAAGCCGAGGATCGACCTGGTCCCCCCTGCGTGCTCTCGATCCTGCTGCC
GCAACCCTCGATTCAATCCGATCTTAGACTGGGAATGAAATCTGTATGCTTAGACTAGGGATGAA
CTCCGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCGTTCAGCCGACCAGAGAAGCAAAA
TGCGCAAGTCGGGGATCGGCTCGG
Found at i:10582540 original size:158 final size:157
Alignment explanation
Indices: 10582180--10582553 Score: 353
Period size: 158 Copynumber: 2.4 Consensus size: 157
10582170 CTGCTGCTGG
* * * * * *
10582180 TCCTGCTATCGCAACCCTCAGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT-CCTAAGT
1 TCCTGCTACCGCAACCCTC-GGTTCGTCTGATCTTAGACTGGGAATGAACTCCATATGCCAAAGC
* * * * * * *
10582244 AAACCCATGAACGAGCGTGCGGGCGCTGAACCGACCGGAGAGGCATAATGTGTAAGCTGGGGATC
65 AAACCCATGAAAGAGCGTACGGGCGCTCAACCGACCAGAGAGGCAGAATGCGTAAGCCGGGGATC
10582309 AGAACGATCCCCCTCTGCGTGCTACCGA
130 AGAACGATCCCCCTCTGCGTGCTACCGA
* * * * ** * *
10582337 TCCCGCTGCCACAACCCTCGG-TCTGGCTGGGGCTTGGACAT-GGAATGAACTCCCTATGCCAAA
1 TCCTGCTACCGCAACCCTCGGTTC-GTCT-GATCTTAGAC-TGGGAATGAACTCCATATGCCAAA
* * * * * * *
10582400 GCCAACCCATGAAATAGGGTTACGGGTGCTCAGCCGGCCAGAGAGGTAGAATGCGTAAGCCGGGG
63 GCAAACCCATGAAAGAGCG-TACGGGCGCTCAACCGACCAGAGAGGCAGAATGCGTAAGCCGGGG
* * **
10582465 ATC-GACTCGATCCTCC-CTGCGTGCTGTCGA
127 ATCAGA-ACGATCCCCCTCTGCGTGCTACCGA
*
10582495 TCCTGCTACCGTAACCCTCGGTTCGATCTGATCTTAGACTGGGAATGAACTCCATATGC
1 TCCTGCTACCGCAACCCTCGGTTCG-TCTGATCTTAGACTGGGAATGAACTCCATATGC
10582554 TTAGACTGGG
Statistics
Matches: 168, Mismatches: 40, Indels: 17
0.75 0.18 0.08
Matches are distributed among these distances:
155 1 0.01
156 4 0.02
157 38 0.23
158 75 0.45
159 50 0.30
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (157 bp):
TCCTGCTACCGCAACCCTCGGTTCGTCTGATCTTAGACTGGGAATGAACTCCATATGCCAAAGCA
AACCCATGAAAGAGCGTACGGGCGCTCAACCGACCAGAGAGGCAGAATGCGTAAGCCGGGGATCA
GAACGATCCCCCTCTGCGTGCTACCGA
Found at i:10582563 original size:26 final size:26
Alignment explanation
Indices: 10582527--10582579 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10582517 TCGATCTGAT
*
10582527 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
10582553 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
10582579 C
1 C
10582580 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:10583288 original size:26 final size:26
Alignment explanation
Indices: 10583250--10583302 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10583240 GGCTCAAACT
*
10583250 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
10583276 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
10583302 C
1 C
10583303 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:10583575 original size:159 final size:159
Alignment explanation
Indices: 10583276--10583714 Score: 400
Period size: 159 Copynumber: 2.8 Consensus size: 159
10583266 ACTCTGTATG
* * ** * * * *
10583276 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAACGAAACGAGTGTGCGGGTGCTCAG
1 CTTAGACATGGAATGAACTACATATGCAAAAGCCAACCCAACAAAACAAGCGTGCGGGCGCTCAG
* * * * *
10583341 CCGGCCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCAATCC
66 CCAGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTGTCAATCC
* *
10583406 TACTGTCACAACCCTCAGTTTGGTCTAAC
131 CACTGCCACAACCCTCAGTTTGGTCTAAC
* *
10583435 CTTAGAC-TGGGAATGAACTACATATGCAAAAGTCAACCC-ACAAAACAAGCGTGCGGGCGCTGA
1 CTTAGACAT-GGAATGAACTACATATGCAAAAGCCAACCCAACAAAACAAGCGTGCGGGCGCTCA
* * * * *
10583498 GCCAGCTGAAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCATGCTGTCAGT
65 GCCAGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCC-CTGCATGCTGTCAAT
* ** ***
10583563 CCCACTGCCACAACCTTCAGTCCGG-CTGGGG
129 CCCACTGCCACAACCCTCAGTTTGGTCT-AAC
* * ** ** ** *
10583594 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC-ATGAAACGGGCGAGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTACATATGCAAAAGCCAACCCAACAAAACAAGCGTGCGGGCGCTCAG
* * * * * * * * * *
10583658 TCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATTGGCTCGATCCCCCTTGCGTGCT
66 CCAGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCT
10583715 ATCGATCCTG
Statistics
Matches: 225, Mismatches: 51, Indels: 9
0.79 0.18 0.03
Matches are distributed among these distances:
158 70 0.31
159 154 0.68
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTACATATGCAAAAGCCAACCCAACAAAACAAGCGTGCGGGCGCTCAG
CCAGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTGTCAATCC
CACTGCCACAACCCTCAGTTTGGTCTAAC
Found at i:10584069 original size:171 final size:170
Alignment explanation
Indices: 10583777--10584175 Score: 414
Period size: 171 Copynumber: 2.3 Consensus size: 170
10583767 AATGCCATAG
* * * *
10583777 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG-ATGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA-CCACGAAACGAGCGTGCGGGCACTCAG
* * * *
10583841 CCAGCCGGAGAGGTGTAGTGCACAAGTCGGGGATCACCCCGATCCCCCTCTGCGTGCTACTGA-T
65 CCAGCCGGAGAGGTGTAATGCACAAGCCAGGGATCACCCCGATCCCCCTCTGCGTGCTAC-CATT
* * **
10583905 CCTGCTGCCGGTCTTGCTGCCACAACCCTTGGTCCAACTAGA
129 CCTGCTGCCGGTCCTACTGCCACAACCCTCAGTCCAACTAGA
* *
10583947 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACTCATGAAACGAGCGTGCGGGCACTC-
1 GCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAAC-CACGAAACGAGCGTGCGGGCACTCA
* * * *** *
10584010 GATCGGCCGGAGAGGTAG-AATGCGCAAGCCAGGGATCGGTCCGATCCCACC-CTGCGTGCTGCC
64 G-CCAGCCGGAGAGGT-GTAATGCACAAGCCAGGGATCACCCCGATCCC-CCTCTGCGTGCTACC
* * * **** *
10584073 ATTCCTGCTGCTGGTCCTACTGTCGCAACCCTCAGTCTGGTTTGA
126 ATTCCTGCTGCCGGTCCTACTGCCACAACCCTCAGTCCAACTAGA
*
10584118 TCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGG
1 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC-ACGAAACGAGCGTGCGGG
10584176 TGCTCAACTG
Statistics
Matches: 188, Mismatches: 32, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
169 1 0.01
170 46 0.24
171 138 0.73
172 3 0.02
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (170 bp):
GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCACGAAACGAGCGTGCGGGCACTCAGC
CAGCCGGAGAGGTGTAATGCACAAGCCAGGGATCACCCCGATCCCCCTCTGCGTGCTACCATTCC
TGCTGCCGGTCCTACTGCCACAACCCTCAGTCCAACTAGA
Found at i:10585244 original size:159 final size:156
Alignment explanation
Indices: 10584851--10585249 Score: 372
Period size: 157 Copynumber: 2.5 Consensus size: 156
10584841 CTCCGTATGG
* * * *
10584851 TTAGACTTGGAATGAACTCCGTCTGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGTC
1 TTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGTC
* * * * * ** *
10584916 GACCGGAGAGGCAGAATGTGCACGTCGGGGATCGGCCTGGTCCCCCCTGCATGCTGTCGATCCTA
65 GACCGGAGAGGCAGAATGTGCAAGCCGAGGATCGGCCCGGTCCCCCCTACATGCTACCGATCCCA
* ** * *
10584981 CTGCCGCAACCTCGGTCCAGTCTGATC
130 CTGCCACAACCTCAATCCAGGCTGAGC
* * * ** * * * *
10585008 TTAGGCTGGGAATGAACTCCATTTGCATAAGTAAACCCATGAAATGAGG-GTACGGGCGCTGAGC
1 TTAGACT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACG-GGCGTACGGGCGCTCAGT
** * * * *
10585072 CGACCAAAAAGGCATAATGTGCAAGCCGAGGATCGGCCCGGTCCCCCTCTACGTGCTACCGGTCC
64 CGACCGGAGAGGCAGAATGTGCAAGCCGAGGATCGGCCCGGTCCCCC-CTACATGCTACCGATCC
* *
10585137 CACTGCCACAACCCTCAAT-CTGGCTGGGGC
128 CACTGCCACAA-CCTCAATCCAGGCT-GAGC
* *
10585167 TTAGACATGGATTGAACTCTC-TATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGT
1 TTAGAC-TGGAATGAACTC-CATATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGT
*
10585231 CGGCCGGAGAGGCAGAATG
64 CGACCGGAGAGGCAGAATG
10585250 CATAAGCCGG
Statistics
Matches: 185, Mismatches: 49, Indels: 14
0.75 0.20 0.06
Matches are distributed among these distances:
156 1 0.01
157 87 0.47
158 28 0.15
159 67 0.36
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
TTAGACTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGTCG
ACCGGAGAGGCAGAATGTGCAAGCCGAGGATCGGCCCGGTCCCCCCTACATGCTACCGATCCCAC
TGCCACAACCTCAATCCAGGCTGAGC
Found at i:10585355 original size:26 final size:26
Alignment explanation
Indices: 10585326--10585376 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
10585316 GGTCTGATCG
*
10585326 TAGACTCGGAATGAACTCTGTATGCT
1 TAGACTCGGAATGAACTCCGTATGCT
* *
10585352 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTCGGAATGAACTCCGTATGC
10585377 CTATGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTCGGAATGAACTCCGTATGCT
Found at i:10585929 original size:26 final size:26
Alignment explanation
Indices: 10585888--10585940 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10585878 CTGGTCTGAT
10585888 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
10585914 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
10585940 C
1 C
10585941 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:10586908 original size:158 final size:157
Alignment explanation
Indices: 10586616--10587113 Score: 577
Period size: 158 Copynumber: 3.2 Consensus size: 157
10586606 CATGGCTCAA
* * *
10586616 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTC
1 AATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTC
* * * * * * *
10586681 AGCCGGTAGAAAAGGTAGAATGTGCAAGCCGGGGATCGGCTCGGTCCCCCCTACATGCTGTCGAT
66 AGCCAGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGC-CCGTCCCCCCTGCATGCTGTCGAT
10586746 CCTGCTGCCACAACCCTCAGTCTGGTCC
130 CCTGCTGCCACAACCCTCAGTCTGGTCC
* * * *
10586774 AATCTTAGACTAGGAATAAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTA
1 AATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTC
* * **
10586839 AGCCAGTCGAAGAGGCATAATGCGCAAGCCGGGGATAGGCCCGTCCCCCTCTGCATGCTGTCGGC
66 AGCCAGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGTCCCCC-CTGCATGCTGTCGAT
** *
10586904 CCTGCTGCCACAACCCTCAGTCCAG-CTG
130 CCTGCTGCCACAACCCTCAGTCTGGTC-C
*** * * * * *
10586932 GGGCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCTTACAAGCGCT
1 AATCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCT
* * * * * * *
10586996 CAGTCAATCGGAGAGGCAGAATGCACAAGCCGGGGATCGACTCGATCCCCCCTGCATGCTGTCAA
65 CAGCCAGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCG-TCCCCCCTGCATGCTGTCGA
* * *
10587061 TCCTGCTACCGCAACCCTCGGTCTGGTCC
129 TCCTGCTGCCACAACCCTCAGTCTGGTCC
*
10587090 AATCTTAGACTGGGAATGAACTCC
1 AATCTTAGACTAGGAATGAACTCC
10587114 AATGCTTAGA
Statistics
Matches: 280, Mismatches: 54, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
157 10 0.04
158 263 0.94
159 7 0.03
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (157 bp):
AATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTC
AGCCAGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGTCCCCCCTGCATGCTGTCGATC
CTGCTGCCACAACCCTCAGTCTGGTCC
Found at i:10587123 original size:25 final size:24
Alignment explanation
Indices: 10587087--10587138 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 24
10587077 CTCGGTCTGG
10587087 TCCAATCTTAGACT-GGGAATGAAC
1 TCCAATCTTAGACTAGGG-ATGAAC
*
10587111 TCCAATGCTTAGACTATGGATGAAC
1 TCCAAT-CTTAGACTAGGGATGAAC
10587136 TCC
1 TCC
10587139 GTATGCCTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 6 0.24
25 17 0.68
26 2 0.08
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (24 bp):
TCCAATCTTAGACTAGGGATGAAC
Found at i:10587875 original size:26 final size:26
Alignment explanation
Indices: 10587837--10587889 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10587827 GGCTCAAAAT
*
10587837 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
10587863 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
10587889 C
1 C
10587890 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:10590823 original size:26 final size:26
Alignment explanation
Indices: 10590772--10590824 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10590762 CTAGTCTGAT
* *
10590772 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10590798 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
10590824 C
1 C
10590825 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10591384 original size:159 final size:158
Alignment explanation
Indices: 10590950--10591394 Score: 492
Period size: 155 Copynumber: 2.8 Consensus size: 158
10590940 CCGCTGCCAG
* **
10590950 TCCTGCTACCACAACCCTCAGTCTGG-CTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAA
1 TCCTGCTACCACAACCCTCGGTCTGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAA
* * * * **
10591013 GCCAACCCACGAAACGAGTGTGCAGGCGCTCAGTCAGCCGGAGAGGTAGAATGCACAAGTTGGGG
64 GTCAACCCACGAAACGAGCGTGC-GGCGCTCAGTCAGCCGGAGAGGCAGAATGCGCAAGCCGGGG
* * **
10591078 A-CCGCCCTGGTCCCTTCTGCGTGCTGTCGA
128 ATCAGCCCTGATCCCCCCTGCGTGCTGTCGA
* * ** * *
10591108 TCTTGCTACCACAACCCTCGGTCTAGTCCAATCTT--A-TGGGAATGAACTTCGTACGCCTAAGT
1 TCCTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * *
10591170 CAACCCATGAAATGAGCGTGCGGGCACTGAGCCAGCCGGAGAAGCATAATGCGCAAGCCGGGGAT
66 CAACCCACGAAACGAGCGTGC-GGCGCTCAGTCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGAT
10591235 CAGCCC-GATCCCCCCATGCGTGCTGTCGA
130 CAGCCCTGATCCCCCC-TGCGTGCTGTCGA
* *
10591264 TCCTGCTACCACAACACTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 TCCTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * *
10591329 GAACCCACGAAACGAGCATGCGGACGCTCAGTC-GACCAGAGAGGCAGAATGCGCAAGCCGGGGA
66 CAACCCACGAAACGAGCGTGCGG-CGCTCAGTCAG-CCGGAGAGGCAGAATGCGCAAGCCGGGGA
10591393 TC
129 TC
10591395 GAACGGGTGG
Statistics
Matches: 233, Mismatches: 45, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
154 1 0.00
155 78 0.33
156 48 0.21
158 30 0.13
159 76 0.33
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
TCCTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACGAGCGTGCGGCGCTCAGTCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATC
AGCCCTGATCCCCCCTGCGTGCTGTCGA
Found at i:10592371 original size:159 final size:158
Alignment explanation
Indices: 10592034--10592496 Score: 430
Period size: 159 Copynumber: 2.9 Consensus size: 158
10592024 TATGCTTAGG
* * * ** * * **
10592034 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAGGAGCGTGCTGGCACTCAG-CAGGTC
1 CATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCA-ACC
* * * * * * * * *
10592098 -ATAGAGGCAGAATGTGCAAGCCGAGGATTGGCCCGGTCCCCCCTGCATGCTGTCAATCCTGCTG
65 GA-AGAGGCAGAATGCGAAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCCTGCTG
* ** * ** * *
10592162 CCACAACCCTCGGTCTGGTCCA-ATCTTAAA
129 CCACAACCCTCAGTCCAG-CTAGGGCGTAGA
*** ** * * **
10592192 C-TGGGAATGAACTTTGTATGCATAAGTTAACCCACGAAACGAGCGTGCGGGCGCTGAGCCAGTC
1 CAT-GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCAACC
* * * *
10592256 GAAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTACGTGCTGCCGGTCCTGCTG
65 GAAGAGGCAGAATGCGAAAGCCGGGGATCGGCCCGATCCCCC-CTACGTGCTGCCGATCCTGCTG
10592321 CCACAACCCTCAGTCCAGCTAGGGCGTAGA
129 CCACAACCCTCAGTCCAGCTAGGGCGTAGA
*
10592351 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCAACCG
1 CATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCAACCG
* * * *
10592416 GAGAGGCAGAATGCGAAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCC
66 AAGAGGCAGAATGCGAAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCCTGCTGCC
* * *
10592481 GCAACCGTCGGTCCAG
131 ACAACCCTCAGTCCAG
10592497 TTCGATCTTA
Statistics
Matches: 249, Mismatches: 50, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
157 1 0.00
158 119 0.48
159 128 0.51
160 1 0.00
ACGTcount: A:0.24, C:0.32, G:0.28, T:0.17
Consensus pattern (158 bp):
CATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCAACCG
AAGAGGCAGAATGCGAAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCCTGCTGCC
ACAACCCTCAGTCCAGCTAGGGCGTAGA
Found at i:10592532 original size:26 final size:26
Alignment explanation
Indices: 10592503--10592555 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10592493 CCAGTTCGAT
*
10592503 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10592529 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10592555 C
1 C
10592556 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10593274 original size:26 final size:26
Alignment explanation
Indices: 10593236--10593288 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10593226 GGCTCAAAAT
10593236 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10593262 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10593288 C
1 C
10593289 CTAGGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10593779 original size:26 final size:26
Alignment explanation
Indices: 10593738--10593790 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10593728 CTGGTCGGAT
10593738 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10593764 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
10593790 C
1 C
10593791 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10594291 original size:26 final size:26
Alignment explanation
Indices: 10594262--10594314 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10594252 TCCGTCTGAT
*
10594262 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10594288 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10594314 C
1 C
10594315 CTAAGTCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10595833 original size:170 final size:171
Alignment explanation
Indices: 10595481--10595803 Score: 409
Period size: 171 Copynumber: 1.9 Consensus size: 171
10595471 TGCTTAGACC
* * * *
10595481 AGGG-ATGAACTCTGTATGCCTAAGTCAACCAACGAAATGAGCGTGCGGGCACTCACTCGACCGA
1 AGGGAATGAACTCCGTATGCCTAAGTCAACCAACAAAACGAGCGTGCGGGCACTCACTCGACCAA
* * * *
10595545 AGAGGCATAATGCGAAAGCCGGGGATTAGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTACC
66 AGAGGCAGAATGCGAAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCCCACTACC
*
10595610 GGTCCTGCTACCACAACCCTCGATCTGGCTGGGGCTTAAAT
131 GGTCCTGCTACCACAACCCTCGATCTGGCTGGAGCTTAAAT
* * ** *
10595651 AGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTTCGGGTGCTCAGTC-AGCCA
1 AGGGAATGAACTCCGTATGCCTAAGTCAACCAACAAAACGAGCGTGCGGGCACTCACTCGA-CCA
* * * * **
10595715 AAGAGGCAGAATGGGCAAGCCGGGGATCAGCCCGGTCCCCC-CTACGTGCTGTCGATCCTACTGT
65 AAGAGGCAGAATGCGAAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCCCACTAC
* * *
10595779 TGGTCCTGCTGCCGCAACCCTCGAT
130 CGGTCCTGCTACCACAACCCTCGAT
10595804 TCGGTCTGAT
Statistics
Matches: 129, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
170 45 0.35
171 84 0.65
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (171 bp):
AGGGAATGAACTCCGTATGCCTAAGTCAACCAACAAAACGAGCGTGCGGGCACTCACTCGACCAA
AGAGGCAGAATGCGAAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCCCACTACC
GGTCCTGCTACCACAACCCTCGATCTGGCTGGAGCTTAAAT
Found at i:10596549 original size:26 final size:26
Alignment explanation
Indices: 10596511--10596563 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10596501 CTGGTTTGAT
*
10596511 CTTAGACTGGGAATGAAATTCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
10596537 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAAATCCGTATG
10596563 C
1 C
10596564 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:10597022 original size:26 final size:26
Alignment explanation
Indices: 10596993--10597045 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10596983 CCGGTCCAAT
10596993 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* * *
10597019 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
10597045 C
1 C
10597046 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:10597106 original size:679 final size:687
Alignment explanation
Indices: 10595650--10597117 Score: 1658
Period size: 679 Copynumber: 2.1 Consensus size: 687
10595640 GGGGCTTAAA
** * * * *
10595650 TAGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTTCGGGTGCTCAGTC-AGCC
1 TAGGG-ATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGAGCTCAGCCGA-CC
* * * * * * **
10595714 AAAGAGGCAGAATGGGCAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCCTACTGT
64 AGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCAGTCCCCCCTACATGCTGCCGATCCTACTAA
* *
10595779 TGGTCCTGCTGCCGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCTTA
129 TGGTCCTACTGCCGCAACCCTCGAGTCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCTTA
* ** * **
10595844 GACATGTAACGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCGCTCAGCCGAC
194 GACATGGAACGAACTCCGTATGCCTAAGCCAACCCATGAAACAAACGTACGGGCGCTCAGCCGAC
* * * * * * *
10595909 CGGAGAGGCAGAATGCATAAGCCGAGGATCAGCCCAGTCCCCCCTGTGTGCTGTCGATCCTGTTG
259 CGGAGAGGCAGAATGCACAAGCCGAGGACCAGCCCAATCACCCCTATGTGCTATCGATCCTGCTG
* * *
10595974 CCGCAACCGTCGATCCGATCCTATCTTAGACTGGGAATGAAGTCCGTATGCATAAGTCAACCCAC
324 CCGCAACCCTCGATCCGATCCTATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCAC
* ** * * *
10596039 GAAACGAGCGTGCGGGTGCTGAGCCGATCGGAGAGGCATAACGCGCAAGCCGAGGATCGGTCGGT
389 GAAACGAGCGTACGGGCACTGAGCCGAGCCGAGAGGCATAACGCGCAAGCCGAGGA--GATCGG-
*
10596104 CCCCCTCTACATGCTACCGGTCTCGCTGCCACAACCATCGGTCCAACTGGGGCTTAGATATGGAA
451 ---CCTCTACATGC-ACC-G-CTCGCTGCCACAACCATCGGTCCAACTAGGGCTTAGATATGGAA
* * ** * * * *
10596169 TGAACTCTCTATGCCTAAGCCAACCCATGAAATGGGGGTACAGACGCTCAGCCGGCCGGAGAGGC
510 TGAACACCCTATGCCTAAGCCAACCCACAAAACGGGCGTACAGACGCTCAGCCGCCCGGAAAGGC
* * * * *
10596234 AGAATACGCAAGCTAGGGATCGACCCGGTTCCCACTGCGTGCTGTCGATCCTGCTACCGCAACCC
575 AAAATACGCAAGCTAGGGATCGACCCGGTCCCCACTGCATGCTGCCGATCCTACTACCGCAACCC
** * * * *
10596299 TTGGTCCGGTCCGATCTTAGATTGGGAATGAACTTCGTATGCTTAGAC
640 TCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGCATGCTTAGAC
* * **
10596347 TAGGGATGAACTCCGTATTCCTAAGTCAACCCATGAAATGAGCGTGCGGGAGCTCAACCGGTCAG
1 TAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGAGCTCAGCCGACCAG
* * * *
10596412 AGAGGCAGAATGCGTAATCCGGGGATCAGCCCAGTCCCCCCTGCATGCTGCCGATCTTGCTAATG
66 AGAGGCAGAATGCGTAAGCCGGGGATCAGCCCAGTCCCCCCTACATGCTGCCGATCCTACTAATG
* * *
10596477 GTCCTAACTGCCGCAACCCTC-AGTCTGGTTTGATCTTAGACTGGGAATGAAAT-TCGTATGCTT
131 GTCCT-ACTGCCGCAACCCTCGAGTC-GGTCTGATCTTAGACTGGGAATGAACTCT-ATATGCTT
* *
10596540 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAACGTACGGGTGCTCAGCCGA
193 AGACATGGAACGAACTCCGTATGCCTAAGCCAACCCATGAAACAAACGTACGGGCGCTCAGCCGA
* ** * * *
10596605 CCGGAGAGGCAGAATGGCGCAAGGTGGGGACC-GACCCAATCATCCCTATGTGCTATCGGTCCTG
258 CCGGAGAGGCAGAAT-GCACAAGCCGAGGACCAG-CCCAATCACCCCTATGTGCTATCGATCCTG
* * * * *
10596669 CTGTCGCAACCCTCGGTCTGGT-CTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC-AC
321 CTGCCGCAACCCTCGATCCGATCCT-ATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAAC
* * * * *
10596732 CCATG-AATGGGCCGTACGGGCACTGAGCCG-GCCGAGAGGCATAATGCGTAAGCC-AGG-GATC
385 CCACGAAACGAG-CGTACGGGCACTGAGCCGAGCCGAGAGGCATAACGCGCAAGCCGAGGAGATC
* * * * *
10596793 GG-C-CT-GAT-C-CC-C-CGTTGCCACAACCCTCGGTCCAGCTAGGGTTTAGATATGGAATGAA
449 GGCCTCTACATGCACCGCTCGCTGCCACAACCATCGGTCCAACTAGGGCTTAGATATGGAATGAA
* * ** *
10596851 CACCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAGTCGCCCGGAAAGGCAAAA
514 CACCCTATGCCTAAGCCAACCCACAAAACGGGCGTACAGACGCTCAGCCGCCCGGAAAGGCAAAA
* * * * * *
10596916 TGCGTAAGCTGGGGATTC-AGCCCGGTCCCCCCTGCATGCTGCCGATCCTACTGCTGCAACCCTC
579 TACGCAAGCTAGGGA-TCGA-CCCGGTCCCCACTGCATGCTGCCGATCCTACTACCGCAACCCTC
*
10596980 AGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGCATGCTTAGAT
642 AGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGCATGCTTAGAC
* * *
10597026 TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCGGCCGACCAG
1 TAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGAGCTCAGCCGACCAG
*
10597091 AGAGGCAGGATGCGTAAGCCGGGGATC
66 AGAGGCAGAATGCGTAAGCCGGGGATC
10597118 GACCAGGTGG
Statistics
Matches: 648, Mismatches: 113, Indels: 38
0.81 0.14 0.05
Matches are distributed among these distances:
678 105 0.16
679 162 0.25
682 2 0.00
684 1 0.00
685 2 0.00
686 2 0.00
687 1 0.00
692 5 0.01
695 3 0.00
696 135 0.21
697 147 0.23
698 83 0.13
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (687 bp):
TAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGAGCTCAGCCGACCAG
AGAGGCAGAATGCGTAAGCCGGGGATCAGCCCAGTCCCCCCTACATGCTGCCGATCCTACTAATG
GTCCTACTGCCGCAACCCTCGAGTCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGA
CATGGAACGAACTCCGTATGCCTAAGCCAACCCATGAAACAAACGTACGGGCGCTCAGCCGACCG
GAGAGGCAGAATGCACAAGCCGAGGACCAGCCCAATCACCCCTATGTGCTATCGATCCTGCTGCC
GCAACCCTCGATCCGATCCTATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGA
AACGAGCGTACGGGCACTGAGCCGAGCCGAGAGGCATAACGCGCAAGCCGAGGAGATCGGCCTCT
ACATGCACCGCTCGCTGCCACAACCATCGGTCCAACTAGGGCTTAGATATGGAATGAACACCCTA
TGCCTAAGCCAACCCACAAAACGGGCGTACAGACGCTCAGCCGCCCGGAAAGGCAAAATACGCAA
GCTAGGGATCGACCCGGTCCCCACTGCATGCTGCCGATCCTACTACCGCAACCCTCAGTCCGGTC
CAATCTTAGACTGGGAATGAACTCCGCATGCTTAGAC
Found at i:10597718 original size:26 final size:26
Alignment explanation
Indices: 10597674--10597726 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10597664 GGCTCAAACT
10597674 CTTAGACTGGAAATAAACTCCGTATG
1 CTTAGACTGGAAATAAACTCCGTATG
*
10597700 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATAAACTCCGTATG
10597726 C
1 C
10597727 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATAAACTCCGTATG
Found at i:10598069 original size:172 final size:171
Alignment explanation
Indices: 10597699--10598069 Score: 414
Period size: 171 Copynumber: 2.2 Consensus size: 171
10597689 AACTCCGTAT
* * *
10597699 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
10597764 CATACCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCCTCTCTGCGTGCTGGTCGAT
66 CAGACCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCAGATCCCTCCCTACATGCTGGTCGAT
* *
10597829 CTTCCTGTCGTCCTGCTACCACAACCCTCAGTCCGGTTGGG
131 CTTCCTCTCGTCCTGCTACCACAACCCTCAGTCCGGTTGGA
*
10597870 GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
10597935 CCGACCGGGAGAGGCAGAATTCAC-AGTC-GAGGATC-GTCCAGGTCCC-CCCTACATGCT-GTC
66 CAGACC-GGAGAGGCAGAATGCACAAGCCAG-GGATCAG-CCAGATCCCTCCCTACATGCTGGTC
* * * *
10597995 GATCCTTGCTACTGGTCCTTGCTACTACAACCCTCGGTCCGGTCT-GA
128 GAT-CTTCCT-CTCGTCC-TGCTACCACAACCCTCAGTCCGGT-TGGA
* *
10598042 TCTTAGAC-TAGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
10598070 TTAGACATGA
Statistics
Matches: 169, Mismatches: 23, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
169 6 0.04
170 15 0.09
171 86 0.51
172 61 0.36
173 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (171 bp):
GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CAGACCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCAGATCCCTCCCTACATGCTGGTCGAT
CTTCCTCTCGTCCTGCTACCACAACCCTCAGTCCGGTTGGA
Found at i:10598930 original size:12 final size:12
Alignment explanation
Indices: 10598913--10598937 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10598903 TTGACGATGG
10598913 ATAGGGGCCAAT
1 ATAGGGGCCAAT
10598925 ATAGGGGCCAAT
1 ATAGGGGCCAAT
10598937 A
1 A
10598938 CCAGCACCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.16, G:0.32, T:0.16
Consensus pattern (12 bp):
ATAGGGGCCAAT
Found at i:10605230 original size:26 final size:26
Alignment explanation
Indices: 10605201--10605251 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
10605191 TCCGGTCTGA
10605201 TCTTAAACTGGGAATGAACTCCGTAT
1 TCTTAAACTGGGAATGAACTCCGTAT
* * *
10605227 TCTTAGACTGGGGATGAGCTCCGTA
1 TCTTAAACTGGGAATGAACTCCGTA
10605252 CGCCTAAGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
TCTTAAACTGGGAATGAACTCCGTAT
Found at i:10605528 original size:159 final size:159
Alignment explanation
Indices: 10605294--10605824 Score: 498
Period size: 159 Copynumber: 3.3 Consensus size: 159
10605284 TGCTCTGCCA
* * * * * *
10605294 GCCAGAGAGGCATAATGCTCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATCCTA
1 GCCAGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGGTCCCCCCCTGCGTGCTGTCGATCCTG
* * * * *
10605359 CGGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATTGAATGAACTCTGTATGCCTAAGCCAACC
66 CTGCCACAACCCTCGGTCCGGCTAGGACTTAGACATGGAATGAACTCTGTATGCCTAAGTCAACC
* *
10605424 CACGAAACGAGCGTGCAAGAGCTCAGTTG
131 CACGAAACGAGCGTGCAGGAGCTCAGTCG
* * * *
10605453 ACCAGAGAGGCAGAATGCACAAGTCGGGGATCAACCCGGTCCCCCCCTTCGTGCTGTCGATCCTG
1 GCCAGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGGTCCCCCCCTGCGTGCTGTCGATCCTG
* * * * * * *
10605518 CTGTCGCAACCCTCAGTTCGATCCA--ATCTTATAC-TGGGAATGAACTCTGTATGCCTAAGTCA
66 CTGCCACAACCCTCGGTCCG-GCTAGGA-CTTAGACAT-GGAATGAACTCTGTATGCCTAAGTCA
* *
10605580 ACCCACGAAATGAGCGTGCAGGCA-CTGAGTCG
128 ACCCACGAAACGAGCGTGCAGG-AGCTCAGTCG
* * * * * * * * *
10605612 GCCGGAGAGCCATAATGCGCAAGCCGAGGATCGATCCGGTCCCCCTCTTCGTGCTGTCTG-TCCC
1 GCCAGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGGTCCCCCCCTGCGTGCTGTC-GATCCT
* * * **
10605676 GCTGCCACAACCCTCGATCTGACTAGGACTTAGACATGGAATGAACTCCCTATGCCTAAGTCAAC
65 GCTGCCACAACCCTCGGTCCGGCTAGGACTTAGACATGGAATGAACTCTGTATGCCTAAGTCAAC
* * * * * * *
10605741 CCATGAGACGGGCGTACGGGCGCTCAGCCG
130 CCACGAAACGAGCGTGCAGGAGCTCAGTCG
* * * ** *
10605771 GCCAGAGAGGCAGAATGCGTAAGTCAGGGATTGACCTGGT-CCCCCCTGCGTGCT
1 GCCAGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGGTCCCCCCCTGCGTGCT
10605825 ACCGATCTTG
Statistics
Matches: 295, Mismatches: 68, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
158 15 0.05
159 275 0.93
160 5 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
GCCAGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGGTCCCCCCCTGCGTGCTGTCGATCCTG
CTGCCACAACCCTCGGTCCGGCTAGGACTTAGACATGGAATGAACTCTGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCAGGAGCTCAGTCG
Found at i:10606091 original size:26 final size:26
Alignment explanation
Indices: 10606062--10606114 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10606052 CTGGTCCGAT
*
10606062 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGAATG
*
10606088 CTTAGACTGGGGATGAACTCTGAATG
1 CTTAGACTGGGAATGAACTCTGAATG
10606114 C
1 C
10606115 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGAATG
Found at i:10606831 original size:26 final size:26
Alignment explanation
Indices: 10606793--10606845 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10606783 AGCTCAAAAT
10606793 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10606819 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10606845 C
1 C
10606846 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10607018 original size:26 final size:26
Alignment explanation
Indices: 10606989--10607039 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
10606979 CCGGTCCAAT
10606989 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
10607015 CTTAGACATGGAATGAACTCTGTAT
1 CTTAGACATGGAATGAACTCCGTAT
10607040 TCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10608204 original size:26 final size:26
Alignment explanation
Indices: 10608168--10608220 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10608158 TCAGACCGAT
10608168 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* *
10608194 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
10608220 C
1 C
10608221 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:10609842 original size:11 final size:11
Alignment explanation
Indices: 10609826--10609877 Score: 59
Period size: 11 Copynumber: 4.7 Consensus size: 11
10609816 CCTAATTTCA
10609826 GTGATGCTCCG
1 GTGATGCTCCG
*
10609837 GTGATGCTCTG
1 GTGATGCTCCG
10609848 GTGATGCTCCG
1 GTGATGCTCCG
** **
10609859 ACGATGCTCTA
1 GTGATGCTCCG
10609870 GTGATGCT
1 GTGATGCT
10609878 TCGACGATGG
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 33 1.00
ACGTcount: A:0.13, C:0.23, G:0.33, T:0.31
Consensus pattern (11 bp):
GTGATGCTCCG
Found at i:10609854 original size:22 final size:22
Alignment explanation
Indices: 10609825--10609886 Score: 88
Period size: 22 Copynumber: 2.8 Consensus size: 22
10609815 CCCTAATTTC
**
10609825 AGTGATGCTCCGGTGATGCTCT
1 AGTGATGCTCCGACGATGCTCT
*
10609847 GGTGATGCTCCGACGATGCTCT
1 AGTGATGCTCCGACGATGCTCT
*
10609869 AGTGATGCTTCGACGATG
1 AGTGATGCTCCGACGATG
10609887 GTGCCCCAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.16, C:0.23, G:0.32, T:0.29
Consensus pattern (22 bp):
AGTGATGCTCCGACGATGCTCT
Found at i:10610665 original size:158 final size:158
Alignment explanation
Indices: 10610463--10610757 Score: 360
Period size: 158 Copynumber: 1.9 Consensus size: 158
10610453 AGAATGCGCA
* * ***
10610463 AGTCAGGGACTGGCCCGATCCCCCCCTACATGCTATCAATCCTGCTACCGCAACCCTCGGTCTGG
1 AGTCAGGGACTGGCCCGATCCCCCCCTACATGCTACCAATCCTGCTACCACAACCCTCGGTCCCA
* * *
10610528 TCCAATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTTCGGGT
66 TCCAAGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGT
10610592 GCTGAGCCGATCGAAAAGGCATAATGCAC
130 GCTGAGCCGATCGAAAAGGCATAATGCAC
* * * * * *
10610621 AGTCAGGGA-TCGGCCCGATCCCCCTCTGCATGTTACCGATCCTGCTGCCACAACCCTCGTTCCC
1 AGTCAGGGACT-GGCCCGATCCCCCCCTACATGCTACCAATCCTGCTACCACAACCCTCGGTCCC
**** * **
10610685 ATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGGGCGTGCGGGT
65 ATCCAAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGT
*
10610750 GCTTAGCC
130 GCTGAGCC
10610758 TGTAGGAGAG
Statistics
Matches: 113, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
157 1 0.01
158 111 0.98
159 1 0.01
ACGTcount: A:0.23, C:0.33, G:0.24, T:0.20
Consensus pattern (158 bp):
AGTCAGGGACTGGCCCGATCCCCCCCTACATGCTACCAATCCTGCTACCACAACCCTCGGTCCCA
TCCAAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTG
CTGAGCCGATCGAAAAGGCATAATGCAC
Found at i:10611275 original size:26 final size:26
Alignment explanation
Indices: 10611224--10611276 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10611214 CCGGTCCGAT
*
10611224 CTTAGACTAGGAATGAACTCAGTATG
1 CTTAGACTAGGAATGAACTCACTATG
*
10611250 CTTAGAC-ATGGAATGAACTCTCTATG
1 CTTAGACTA-GGAATGAACTCACTATG
10611276 C
1 C
10611277 CTAACCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCACTATG
Found at i:10611764 original size:875 final size:874
Alignment explanation
Indices: 10610341--10611993 Score: 2057
Period size: 875 Copynumber: 1.9 Consensus size: 874
10610331 ACCCTTGGTT
* * * * *
10610341 CGGTCTGATCTTAGACTGGGAATGAACTCTATATGTTTAGACATGGAATAAACTTTGTATGCCTA
1 CGGTCCGATCTTAGACTAGGAATGAACTCTATATGCTTAGACATGGAATAAACTCTCTATGCCTA
* * ** * * * *
10610406 AGCCAACCCACGAAATGAGCGTACGGGCACTCAGCTGGCCGGAGAGTAGAATGCGCAAGTCAGGG
66 ACCCAACCAACGAAACAAGCGTACGGGCACTCAACCGGCCGGAGAGTAGAATGCCCAAGCCAGGG
* * * *
10610471 ACTGGCCCGATCCCCCCCTACATGCTATCAATCCTGCTACCGCAACCCTCGGTCTGGTCCAATCT
131 ACCGACCCGATCCCCCCCTACATGCTATCAATCCTGCTACCGCAACCCTCAGTCCGGTCCAATCT
* * ** *
10610536 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTTCGGGTGCTGAGCCG
196 TAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTTCAGGCACTGAGCCA
* ** * * *
10610601 ATCGAAAAGGCATAATGCACAGTCAGGGATCGGCCCGATCCCCCTCTGCATGTTACCGATCCTGC
261 ACCGAAAAGGCATAATGCACAGTCAGGGATCAACCCGATCCCCCTCTACATGCTACCGATCCCGC
* * *
10610666 TGCCACAACCCTCGTTCCCATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCC
326 TGCCACAACCCTCGGTCCCACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* * * * * * *
10610731 ACGAAACGGGCGTGCGGGTGCTTAGCCTGTAGGAGAGACAGAATACGCAAGCTGGGGATTGGTTC
391 ACGAAACAGGCGTGCGGGAGCTTAGCCGGTAGAAGAGACAGAATACGCAAGCCGAGGATCGGTTC
* * * * *** * *
10610796 GGTTCCCCTTGCGTGCTACCGATCCTGCTGCTGTAACCCTCGGTCCAGTCCGATCTTAGATTGGG
456 AGTCCCCCCTGCGTGCTACCGATCCTACTGCCACAACCCTCGATCCAGTCCGATCTTAGACTGGG
* * *
10610861 AATGAACTCCGTATGCTTAGACTGGGGATAAATTCCTTATGCCTAAGTCAACCCACAAAACGAGC
521 AATGAACTCCGTATACTTAGACTGGGGATAAACTCCATATGCCTAAGTCAACCCACAAAACGAGC
* * * * * * *** *
10610926 GTGCGGGCGCTCAGCCGATTGGAGAGGTTGGTCGA-AGAGGCATAATGCGCAAGCCGGGG-TTCA
586 ATACGAGCACTCAGCCAATTGAAGAGGCCAG-CGAGAGAGGCATAATGCACAAGCCGGGGATT-A
* ** *
10610989 ACCCGATCCCCCTCTGCGTGCTG-TCGATCCCGCTGTCGGTCCTACTACCACAACCCTCGGTCCG
649 ACCCGATCCCCCTCTGCATGCTGCT-GATCCCGCTACCGGTCCTACTACCACAACCCTCAGTCCG
* * * * *
10611053 GCTGGGGCTTACACATGGAATGAAC-TCTGTATGCCTAAGCCAACCCATGATACGAGCGTGGGGG
713 ACTGAGGCTTACACATGGAATGAACTTC-GTACGCCTAAGCCAACCCATGAAACGAGCGTGCGGG
10611117 CACTTAGCTGGCCGCAGAATGCGCAAGCCGTGGATCAGCTCGGTTCCCCCTGCATGCTATCGATC
777 CACTTAGCTGGCCGCAGAATGCGCAAGCCGTGGATCAGCTCGGTTCCCCCTGCATGCTATCGATC
10611182 CTACTGCAGGTCCTGCTATCGTAACCCTCGATC
842 CTACTGCAGGTCCTGCTATCGTAACCCTCGATC
*
10611215 CGGTCCGATCTTAGACTAGGAATGAACTC-AGTATGCTTAGACATGGAATGAACTCTCTATGCCT
1 CGGTCCGATCTTAGACTAGGAATGAACTCTA-TATGCTTAGACATGGAATAAACTCTCTATGCCT
* ** * ** * *
10611279 AACCCAACCAATGAAACAAGCGTGTGGGCGCTCAACCGGTTGGGGAGGTAGAATGCCCAAGCCTG
65 AACCCAACCAACGAAACAAGCGTACGGGCACTCAACCGGCCGGAGA-GTAGAATGCCCAAGCCAG
* * * * * **
10611344 GGACCGACCCGATCCCCCCC-ACGTGCTCTCAATCCTGTTGCCGCAACCCTCATTCCGGTCTGAT
129 GGACCGACCCGATCCCCCCCTACATGCTATCAATCCTGCTACCGCAACCCTCAGTCCGGTCCAAT
* * * **
10611408 CTTAGACTTGGAATGAACTTCGTATGCATAAGTCAACCCACGAAATGAGCGTTCAGGCACTGAGC
194 CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTTCAGGCACTGAGC
* * * * *
10611473 CAACCGGAAGGGCATAATGTGCA-AGTCGGGGATCAACCCGGTCCCCCTCTACGA-GCTATCGAT
259 CAACCGAAAAGGCATAA--TGCACAGTCAGGGATCAACCCGATCCCCCTCTAC-ATGCTACCGAT
* ** *
10611536 CCCGTTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATTAACTCCCTATGCCTAAGCC
321 CCCGCTGCCACAACCCTCGGTCCCACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * *
10611601 AACCCATGAAACAGGCGTGCGGGAG-TTCAGTCGGTCGAAGAGGCAGAATGCGCAAGCCGAGGAT
386 AACCCACGAAACAGGCGTGCGGGAGCTT-AGCCGGTAGAAGAGACAGAATACGCAAGCCGAGGAT
*
10611665 CGGTTCAGTCCCCCCTGCGTGCTACCGATCCTACTGCCACAACCCTCGATCC-GATTCGATCTTA
450 CGGTTCAGTCCCCCCTGCGTGCTACCGATCCTACTGCCACAACCCTCGATCCAG-TCCGATCTTA
* * * *
10611729 GACTGGGAATGAACTCTGTATACTTAGATTGGGGATGAACTCCATATGCCTAAGTCAACCCACGA
514 GACTGGGAATGAACTCCGTATACTTAGACTGGGGATAAACTCCATATGCCTAAGTCAACCCACAA
* * * *
10611794 AACGAGCATACGATCACTCAGTCAATTGAATAGGCCAGCTAGAGAGGCATAATGCACAAGCCGGG
579 AACGAGCATACGAGCACTCAGCCAATTGAAGAGGCCAGCGAGAGAGGCATAATGCACAAGCCGGG
* * * * *
10611859 GATTAGCCTGATCCCCCTCTGCATGCTGCTGATCCCGTTACCGGTCCTGCTGCCACAACCCTCAG
644 GATTAACCCGATCCCCCTCTGCATGCTGCTGATCCCGCTACCGGTCCTACTACCACAACCCTCAG
* *
10611924 TCCGACTGAGGCTTACACATGGAATGAACTTCGTACGCCTAAGCTAACCCATGAAACGAGTGTGC
709 TCCGACTGAGGCTTACACATGGAATGAACTTCGTACGCCTAAGCCAACCCATGAAACGAGCGTGC
10611989 GGGCA
774 GGGCA
10611994 TTCAGCCGGT
Statistics
Matches: 648, Mismatches: 120, Indels: 21
0.82 0.15 0.03
Matches are distributed among these distances:
873 1 0.00
874 198 0.31
875 439 0.68
876 10 0.02
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.21
Consensus pattern (874 bp):
CGGTCCGATCTTAGACTAGGAATGAACTCTATATGCTTAGACATGGAATAAACTCTCTATGCCTA
ACCCAACCAACGAAACAAGCGTACGGGCACTCAACCGGCCGGAGAGTAGAATGCCCAAGCCAGGG
ACCGACCCGATCCCCCCCTACATGCTATCAATCCTGCTACCGCAACCCTCAGTCCGGTCCAATCT
TAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTTCAGGCACTGAGCCA
ACCGAAAAGGCATAATGCACAGTCAGGGATCAACCCGATCCCCCTCTACATGCTACCGATCCCGC
TGCCACAACCCTCGGTCCCACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
ACGAAACAGGCGTGCGGGAGCTTAGCCGGTAGAAGAGACAGAATACGCAAGCCGAGGATCGGTTC
AGTCCCCCCTGCGTGCTACCGATCCTACTGCCACAACCCTCGATCCAGTCCGATCTTAGACTGGG
AATGAACTCCGTATACTTAGACTGGGGATAAACTCCATATGCCTAAGTCAACCCACAAAACGAGC
ATACGAGCACTCAGCCAATTGAAGAGGCCAGCGAGAGAGGCATAATGCACAAGCCGGGGATTAAC
CCGATCCCCCTCTGCATGCTGCTGATCCCGCTACCGGTCCTACTACCACAACCCTCAGTCCGACT
GAGGCTTACACATGGAATGAACTTCGTACGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACT
TAGCTGGCCGCAGAATGCGCAAGCCGTGGATCAGCTCGGTTCCCCCTGCATGCTATCGATCCTAC
TGCAGGTCCTGCTATCGTAACCCTCGATC
Found at i:10612156 original size:26 final size:26
Alignment explanation
Indices: 10612104--10612156 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10612094 TCGATCTGAT
*
10612104 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGCATG
*
10612130 CTTAGACTGGGGATGAACT-TCGCATG
1 CTTAGACTGGGAATGAACTCT-GCATG
10612156 C
1 C
10612157 CTAAGTCAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGCATG
Done.