Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 59 of 402
Found at i:10612864 original size:26 final size:26
Alignment explanation
Indices: 10612826--10612878 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10612816 GGCTCAAACT
*
10612826 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
10612852 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
10612878 C
1 C
10612879 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:10613911 original size:25 final size:26
Alignment explanation
Indices: 10613883--10613934 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10613873 CCGGTCCGAT
*
10613883 CTTAGAC-TGGAATGAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
10613908 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
10613934 C
1 C
10613935 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:10615378 original size:26 final size:26
Alignment explanation
Indices: 10615349--10615401 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10615339 TCGGTCCGAT
*
10615349 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCATATG
10615375 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
10615401 C
1 C
10615402 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:10616271 original size:26 final size:26
Alignment explanation
Indices: 10616235--10616287 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10616225 CTGGTCCAAT
*
10616235 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10616261 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
10616287 C
1 C
10616288 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10616994 original size:26 final size:26
Alignment explanation
Indices: 10616955--10617007 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10616945 GGCTCAAACT
* *
10616955 CTTAGACTATGAATGAACTCCGTATG
1 CTTAGACTATGAATAAACTCCATATG
10616981 CTTAGAC-ATGGAATAAACTCCATATG
1 CTTAGACTAT-GAATAAACTCCATATG
10617007 C
1 C
10617008 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (26 bp):
CTTAGACTATGAATAAACTCCATATG
Found at i:10617355 original size:343 final size:342
Alignment explanation
Indices: 10616725--10617384 Score: 933
Period size: 343 Copynumber: 1.9 Consensus size: 342
10616715 AAATGCTCTT
* *
10616725 TAAGGGGGTGTGAGTTCTCGAGGTTTGATTAGGGATAGAGGGACAATATAAAGGCCAAGTACCAG
1 TAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGAGGGACAATATAAAGGCCAAGTACCAG
* * * * ** *
10616790 CACCCATCGTACATCATGTGTGCACACCCCTCGACCCCCCAATCACCGGAACCCACAATACCGCC
66 CACCCATCGCAAATCATGTGCGCACACCCCCCGACCCCCCAATCACCAAAACCCACAATACCACC
* * *
10616855 GGTTAGGCTCTCCGATGATGCTCCGATGATGGTGCCCTGGGCCAAAAAAATACGGCACCAGCATA
131 GGTTAGGCTCTCCGACGATGCTCCGACGATGGTGCCCTGGGCCAAAAAAATACGGCACCAGCACA
* * * * * * * *
10616920 TGCTCGAGCCCAGCATACACACCGTGGCTCAAACTCTTAGACTATGAATGAACTCCGTATGCTTA
196 TGCCCAAGCCCAGCATACACACCATGGCTAAAAATCTTAGACTACGAAAGAACTCCATATGCTTA
* *
10616985 GACATGGAATAAACTCCATATGCCTAAGCCAACCCACGGAACGAGCGTGTGGGTGCTTAGCTGGC
261 GACATGGAATAAACTCCATACGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTTAGCTGGC
10617050 CGGAGAGGCCGAATGCG
326 CGGAGAGGCCGAATGCG
* * * *
10617067 TAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAT
1 TAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGAGGGACAATATAAAGGCCAAGTACCAG
* * * * * *
10617132 CACCCATTGCAAATCATGTGCGCACACCCCCCGGCCCCCCCAATCATCAAAACCCCCAATGCCAT
66 CACCCATCGCAAATCATGTGCGCACACCCCCC-GACCCCCCAATCACCAAAACCCACAATACCAC
** **
10617197 CGGTTAGGCTCTCCGACGATGCTCCGACGATGGTGCCCTGGGTGAAAAAAATGTGGCACCAGCAC
130 CGGTTAGGCTCTCCGACGATGCTCCGACGATGGTGCCCTGGGCCAAAAAAATACGGCACCAGCAC
***
10617262 ATGCCCAAGCCCAGCATGTGCACCATGGCTAAAAATCTTAGACTACGAAAGAACTCCATATGCTT
195 ATGCCCAAGCCCAGCATACACACCATGGCTAAAAATCTTAGACTACGAAAGAACTCCATATGCTT
* * *
10617327 AGACATGGAATGAACTCCGTACGCCTAAGCCAACGCACGAAACGAGCGTGTGGGTGCT
260 AGACATGGAATAAACTCCATACGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCT
10617385 CAGCCGATCG
Statistics
Matches: 275, Mismatches: 42, Indels: 1
0.86 0.13 0.00
Matches are distributed among these distances:
342 86 0.31
343 189 0.69
ACGTcount: A:0.28, C:0.28, G:0.25, T:0.19
Consensus pattern (342 bp):
TAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGAGGGACAATATAAAGGCCAAGTACCAG
CACCCATCGCAAATCATGTGCGCACACCCCCCGACCCCCCAATCACCAAAACCCACAATACCACC
GGTTAGGCTCTCCGACGATGCTCCGACGATGGTGCCCTGGGCCAAAAAAATACGGCACCAGCACA
TGCCCAAGCCCAGCATACACACCATGGCTAAAAATCTTAGACTACGAAAGAACTCCATATGCTTA
GACATGGAATAAACTCCATACGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTTAGCTGGC
CGGAGAGGCCGAATGCG
Found at i:10617627 original size:159 final size:156
Alignment explanation
Indices: 10617324--10617848 Score: 500
Period size: 159 Copynumber: 3.3 Consensus size: 156
10617314 ACTCCATATG
* * * *
10617324 CTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACGCACGAAACGAGCGTGTGGGTGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGTGGGTGCTCAGC
* * * * * *
10617389 CGATCGGAGAGACAGAATGCACAAGCTGGGGATCGACCCGGTCCCCCACTGCATGCTATCGATCA
65 CGACCGGAGAGGCAGAATGCACAAGC-CGGGATCGGCCCGGTCCCCC-CTGCGTGCTATCGATCC
* *
10617454 TGCTACCGTAACCCTCAGTTCGATCTGAT
128 TGCTGCCGCAACCCTCAGTTCGATCTGAT
* * * * ** * *
10617483 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACAAAATGAGCGTATGGGCACTGAAC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGTGGGTGCTCAGC
* * *
10617548 CGACCGAAGAGGCATAATGCACAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGATCC
65 CGACCGGAGAGGCAGAATGCACAAGCC-GGGATCGGCCCGGTCCCCC-CTGCGTGCTATCGATCC
* * * * **
10617613 CGCTGCCACAACCCTCAGTCCGGT-TGGGG
128 TGCTGCCGCAACCCTCAGTTCGATCT-GAT
* * * ** * *
10617642 ATTAGAGATGGAATGAACTCCCTATGCCTAAG-CTAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 CTTAGA-CTGGAATGAACTCCGTATGCCTAAGTC-AACCCACAAAACGAGCGTGTGGGTGCTCAG
* * * *
10617706 CCGACCGGAGAGGCAGAACGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGTGTGCTGTCGATCC
64 CCGACCGGAGAGGCAGAATGCACAAGCCG-GGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCC
* * *
10617771 TGCTGTCGCAA-CCTCAG-TCCAGTCCGAT
128 TGCTGCCGCAACCCTCAGTTCGA-TCTGAT
* * *
10617799 CTTAGATTGGTAATGAACTTCGTATGCCTAAGTCAACCCACAAAAAGAGC
1 CTTAGACTGG-AATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGC
10617849 ATGCGGGCGC
Statistics
Matches: 287, Mismatches: 69, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
156 4 0.01
157 44 0.15
158 27 0.09
159 211 0.74
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGTGGGTGCTCAGCC
GACCGGAGAGGCAGAATGCACAAGCCGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCTGC
TGCCGCAACCCTCAGTTCGATCTGAT
Found at i:10618834 original size:26 final size:26
Alignment explanation
Indices: 10618783--10618835 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
10618773 GGCTCAAACT
* * *
10618783 CTTAGACTGTGAATGAACTTCGTATG
1 CTTAGACTGTGAATAAACTCCATATG
10618809 CTTAGACATG-GAATAAACTCCATATG
1 CTTAGAC-TGTGAATAAACTCCATATG
10618835 C
1 C
10618836 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTAGACTGTGAATAAACTCCATATG
Found at i:10619101 original size:158 final size:158
Alignment explanation
Indices: 10618808--10619116 Score: 352
Period size: 158 Copynumber: 2.0 Consensus size: 158
10618798 AACTTCGTAT
* * * * *
10618808 GCTTAGACATGGAATAAACTCCATATGCCTAAGCCAACCCATGGAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATAAACTCCATATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCAG
* ** * * ** * *
10618873 CTGGCCGGAAAGGCAGAATGCGTAAGTTGGGGATTGGCCCAATCCTTCGCTGCGTGCTCCGATCC
66 CCGGCCGGAAAGGCAGAATGCCCAAGTTGGGGATCGACCCAATCCCACGCTACATGCTCCGATCC
10618938 CGCTACCACAACCCTCGGTCCGGCTGGG
131 CGCTACCACAACCCTCGGTCCGGCTGGG
* * * *
10618966 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACGCACGAAACGAACGTGCGGGCACTCAG
1 GCTTAGACATGGAATAAACTCCATATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCAG
* * * *
10619031 CCGGTCGGAGAGGCAGAATGCCCAA-TCTGGGGATCGACTCGATCCCAC-CTACATGCTACCGAT
66 CCGGCCGGAAAGGCAGAATGCCCAAGT-TGGGGATCGACCCAATCCCACGCTACATGCT-CCGAT
** **
10619094 CTTGCTACCGTAACCCTCGGTCC
129 CCCGCTACCACAACCCTCGGTCC
10619117 AGTCCGATCC
Statistics
Matches: 123, Mismatches: 26, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
157 8 0.07
158 115 0.93
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATAAACTCCATATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCAG
CCGGCCGGAAAGGCAGAATGCCCAAGTTGGGGATCGACCCAATCCCACGCTACATGCTCCGATCC
CGCTACCACAACCCTCGGTCCGGCTGGG
Found at i:10626348 original size:26 final size:26
Alignment explanation
Indices: 10626310--10626362 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10626300 GGCTCAAAAT
*
10626310 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10626336 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10626362 C
1 C
10626363 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10626544 original size:26 final size:26
Alignment explanation
Indices: 10626506--10626558 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10626496 CTGGTCTGAT
10626506 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
10626532 CTTAGAC-ATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
10626558 C
1 C
10626559 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:10626653 original size:196 final size:196
Alignment explanation
Indices: 10626308--10626666 Score: 544
Period size: 196 Copynumber: 1.8 Consensus size: 196
10626298 ATGGCTCAAA
* *
10626308 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
** * * * * *
10626373 CCACGAAACGAGCGTGCGGGCGCTCAGCCGATCAGAGAGGCAGAATGCGCAAGCCTGGGATCGGC
66 CCACGAAACGAGCGAACGGGCACTCAGCCGATCAGAGAGGCAGAATACGCAAGCATGGGACCGAC
10626438 CTGGTCCCCCCTACGTGCTGTCGATCCTACTGCTGGTTCTGCTACCGCAACCCTCGGTCTGGTCT
131 CTGGTCCCCCCTACGTGCTGTCGATCCTACTGCTGGTTCTGCTACCGCAACCCTCGGTCTGGTCT
10626503 G
196 G
*
10626504 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAC
1 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
*
10626569 CCACTAAACGAGCGAACGGGCACTCAGCCGA-CTAGAGAGGCAGAATACGCAAGTCAT-GGACCG
66 CCACGAAACGAGCGAACGGGCACTCAGCCGATC-AGAGAGGCAGAATACGCAAG-CATGGGACCG
* * *
10626632 A-CTCGGTCCCTCTTGCGTGCTGTCGATCCTACTGC
129 ACCT-GGTCCCCCCTACGTGCTGTCGATCCTACTGC
10626667 CGCAACCTTT
Statistics
Matches: 146, Mismatches: 14, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
195 3 0.02
196 141 0.97
197 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (196 bp):
ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGAACGGGCACTCAGCCGATCAGAGAGGCAGAATACGCAAGCATGGGACCGAC
CTGGTCCCCCCTACGTGCTGTCGATCCTACTGCTGGTTCTGCTACCGCAACCCTCGGTCTGGTCT
G
Found at i:10628044 original size:159 final size:157
Alignment explanation
Indices: 10627743--10628237 Score: 476
Period size: 159 Copynumber: 3.1 Consensus size: 157
10627733 ACTCCATATG
** * * *
10627743 CTTAGACATGGAATGAACTCTGTATGCCTAGGCCAACCCACGAAATGAGCGTGCGGGCGTTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAACGTGCGGGCGCTCAGC
* * * * * * * * * *
10627808 CAACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCCTGCATGCTGTCGATCT
66 CGACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGT-CCCCCCTGCGTGCTGCCGGTCC
*
10627873 TGCTACCGCAACCCTCGATCTGGTCTGAT
130 TGCTACCGCAACCCTCGGTC-GGTCTGAT
* * * * *
10627902 CTTAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCCACGAAATGAACGTACGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAACGTGCGGGCGCTCAG
* * * *
10627966 CCGACCGAAGAGACATAATGCGCAAGCTGGGGATCGGCCCGGTCCCCTTCTGCGTGTTGCCGGTC
65 CCGACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCC-CCTGCGTGCTGCCGGTC
* * * * *** **
10628031 CCGCTGCCACAACCTTCGGTCCAACTGGGG
129 CTGCTACCGCAACCCTCGGTCGGTCT-GAT
* * *
10628061 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-CAAGTGTGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAA-CGTGCGGGCGCTCAG
* * * * * *
10628125 TCGACCGGAA-AGGCAGAATGTGCAAGTTGGTGATCGGCCTGGTCCCCCCTGTGTGCTGCCGGTC
65 CCGACC-GAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGGTC
*
10628189 CTGCTACCGCAACCCTCGGTCCGGTCCGAT
129 CTGCTACCGCAACCCTCGGT-CGGTCTGAT
*
10628219 CTTAGA-GTGGGAATGAACT
1 CTTAGACAT-GGAATGAACT
10628238 TGTATGCTTA
Statistics
Matches: 265, Mismatches: 63, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
157 1 0.00
158 56 0.21
159 204 0.77
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAACGTGCGGGCGCTCAGC
CGACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGGTCCT
GCTACCGCAACCCTCGGTCGGTCTGAT
Found at i:10628268 original size:26 final size:25
Alignment explanation
Indices: 10628219--10628270 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
10628209 CCGGTCCGAT
* *
10628219 CTTAGAGTGGGAATGAACTTGTATG
1 CTTAGACTGGGAATGAACTCGTATG
*
10628244 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACT-CGTATG
10628270 C
1 C
10628271 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCGTATG
Found at i:10628743 original size:354 final size:342
Alignment explanation
Indices: 10627902--10628820 Score: 895
Period size: 354 Copynumber: 2.6 Consensus size: 342
10627892 CTGGTCTGAT
* * * * *
10627902 CTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCACGAAATGAACGTACGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCACTCAGC
* * * *
10627967 CGACCGAAGAGACATAATGCGCAAG-CTGGGGATCGGCCCGGTCCCCTTCTGCGTGTTGCCGGTC
66 CGACCGGAGAGGCATAATGCGCAAGTC-GGGGATCGGCCTGGTCCCCTTCTGCGTGTTGTCGGTC
* * ** * *
10628031 CCGCTGCCACAA-CCTTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
130 CTGCTGCCACAACCCTT-GATCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
** * * * ** **
10628095 AACCCACGAAACAAGTGTGCGGGCGCTCAGTCGACCGGAAAGGCAGAATGTGCAAGTTGGTGATC
194 AACCCACGAAATGAGCGTACGGGCGCTCAGTAGACCGGAAAGGCAGAATGCACAAGCCGGTGATC
* *
10628160 GGCCTGGTCCCCCCTGTGTGCTGCCGGTCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGA
259 GGCCTGGTCCCCCCTGTGTGCTGCCGGTCCTGCTACAGCAACCCTCAGTCCGGTCCGATCTTAGA
**
10628225 GTGGGAATGAACTTGTATG
324 GTGGGAATGAACTCATATG
* *
10628244 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCACTCTGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCACTCAGC
* * * *
10628309 CAACCGGAGAGGCATAATGCGCGAGTCGGGGATCAG-CTCGGTTCCCTTCTGCGTGTAGCCGATC
66 CGACCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCT-GGTCCCCTTCTGC--GT----G-T-
* *
10628373 TCGCTGCCGGTCCTGCTACCACAACCCTTGATCCGGCTAGGGCTTAGACATGGAATGAACTTCGT
122 T-G-T--CGGTCCTGCTGCCACAACCCTTGATCCGGCTAGGGCTTAGACATGGAATGAACTCCGT
*
10628438 ATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGCTAG-CC-GAAGAGGTAGAATGCA
183 ATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG-TAGACCGGAA-AGGCAGAATGCA
* * *
10628501 CAAGCC-GTGGATCGGCTTGGTCCCCCCTACATGCTGTCGATCCTACTGCTGGTCCTGCTGCAGC
246 CAAGCCGGT-GATCGGCCTGGT-CCCCC--C-TG-TGT-G------CTGCCGGTCCTGCTACAGC
* * *
10628565 AACCCTCAGTTCGGTCTGATCTTAGATTGGGAATGAACTCCATATG
298 AACCCTCAGTCCGGTCCGATCTTAGAGTGGGAATGAACT-CATATG
* * * *
10628611 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCACTCAG
* * * * ** *
10628675 CCGACCGGAGAGGCAGAATGTGCAAGTCAGGGATTGGCCTGG-CCCCCCCTGCGTGTTGTCGATC
65 CCGACCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCTGGTCCCCTTCTGCGTGTTGTCGGTC
** * * * ** *
10628739 CTGCTGCTGCAACCCTAGATCTGG-TCCGATCTTAGAC-TGGTAATGAACTCCGTATGCCTAAGT
130 CTGCTGCCACAACCCTTGATCCGGCT-AGGGCTTAGACATGG-AATGAACTCCGTATGCCTAAGC
*
10628802 CAACCCACAAAATGAGCGT
193 CAACCCACGAAATGAGCGT
10628821 GTGGGCATTG
Statistics
Matches: 471, Mismatches: 71, Indels: 58
0.79 0.12 0.10
Matches are distributed among these distances:
341 1 0.00
342 99 0.21
343 1 0.00
344 2 0.00
348 1 0.00
349 1 0.00
350 1 0.00
351 1 0.00
353 9 0.02
354 177 0.38
355 11 0.02
356 1 0.00
357 2 0.00
358 3 0.01
359 4 0.01
360 2 0.00
364 2 0.00
366 58 0.12
367 92 0.20
368 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (342 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCACTCAGC
CGACCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCTGGTCCCCTTCTGCGTGTTGTCGGTCC
TGCTGCCACAACCCTTGATCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
CCCACGAAATGAGCGTACGGGCGCTCAGTAGACCGGAAAGGCAGAATGCACAAGCCGGTGATCGG
CCTGGTCCCCCCTGTGTGCTGCCGGTCCTGCTACAGCAACCCTCAGTCCGGTCCGATCTTAGAGT
GGGAATGAACTCATATG
Found at i:10628958 original size:159 final size:158
Alignment explanation
Indices: 10628610--10629055 Score: 527
Period size: 159 Copynumber: 2.8 Consensus size: 158
10628600 AACTCCATAT
* *
10628610 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * *
10628675 CCGACCGGAGAGGCAGAATGTGCAAGTCAGGGATTGGCCTGGCCCCCCCTGCGTGTTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* **
10628740 TGCTGCTGCAACCCTAGATCTGGTCCGA
131 CGCTGCCACAACCCTAGATCTGGTCCGA
* * * * ** *
10628768 TCTTAGAC-TGGTAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGTGGGCATTGA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * *
10628832 GCCGGCCGGAGAGGCATAATGTGCAAGCCGGGGACCGGCCCGGTCCCCCTCTGCGTGCTGTTGGT
65 GCCGGCCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGAT
* * ** *
10628897 CCCGCTGCCACAACCCTTGGT-TCGGTTGGG
129 CCCGCTGCCACAACCCTAGATCT-GGTCCGA
* * *
10628927 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * *
10628992 CCAGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATC
66 CCGGCCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
10629056 GGGCTACCGC
Statistics
Matches: 236, Mismatches: 48, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
157 3 0.01
158 107 0.45
159 123 0.52
160 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
CGCTGCCACAACCCTAGATCTGGTCCGA
Found at i:10629846 original size:26 final size:26
Alignment explanation
Indices: 10629808--10629860 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10629798 GGCTCAAAAT
10629808 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10629834 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10629860 C
1 C
10629861 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10630124 original size:159 final size:159
Alignment explanation
Indices: 10629833--10630145 Score: 425
Period size: 159 Copynumber: 2.0 Consensus size: 159
10629823 AACTCCGTAT
* * *
10629833 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGGAACGAGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAA
* * * ** *
10629898 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTGCATGCTGTCGGTC
66 CCAGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCTCTGCATGCTACCGATC
*
10629963 CTGCTGCCATAACCCTCGGTCTGGCTGGG
131 CTGCTGCCACAACCCTCGGTCTGGCTGGG
* * *
10629992 GCTTAGACATGGAATGAACTCCCTAT-CACTAAGCCAACCCATGAAATGGGTGTGCAGGGTGCTC
1 GCTTAGACATGGAATGAACTCCCTATGC-CTAAGCCAACCCATGAAACGAGCGTGCA-GGTGCTC
* *
10630056 AACCAGCCGGAGAGGCAGAATGCACAAGCCGGGGATC-AGCCTGGTCCCCC-CTGCGTGCTACCG
64 AACCAGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGA-CCCGGTCCCCCTCTGCATGCTACCG
* *
10630119 ATCCTGCTGTCGCAACCCTCGGTCTGG
128 ATCCTGCTGCCACAACCCTCGGTCTGG
10630146 TCTGATCTTA
Statistics
Matches: 134, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
158 1 0.01
159 83 0.62
160 50 0.37
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAA
CCAGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCTCTGCATGCTACCGATC
CTGCTGCCACAACCCTCGGTCTGGCTGGG
Found at i:10634034 original size:158 final size:158
Alignment explanation
Indices: 10633649--10634051 Score: 436
Period size: 159 Copynumber: 2.5 Consensus size: 158
10633639 ATCCTGCTAT
* **
10633649 CACAACCCTCGGTCTGATCCGATCTTAAACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACG
1 CACAACCCTCGATCCAATCCGATCTTAAACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * *
10633714 AAACGAGCGTGCGGGTGCTGAGCCGACCGAAGAGGCATAATGCGCAAGCTGGGGATCGGCCCAGT
65 AAACGAGCGTACGGGTGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAGT
*
10633779 CCCCCTCTGCTTGCTGCCAGTCTCGCTGC
130 CCCCCTCTGCGTGCTGCCAGTCTCGCTGC
** ** * * *
10633808 CACAACCCTCGATCCAATAGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
1 CACAACCCTCGATCCAATCCGATCTTAAAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * * * *
10633873 AAACGGGCGTACGGGTGCTCAGCTGGCCGGAGAGGCAGAATGTGTAAGCTGGGGATCGACTCGGT
65 AAACGAGCGTACGGGTGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAGT
*
10633938 -CCCCTCTGCGTGCTG-CGGATC-CTGCTGC
130 CCCCCTCTGCGTGCTGCCAG-TCTC-GCTGC
* * ** * * *
10633966 CGCAACCTTC-AGTCCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCAT
1 CACAACCCTCGA-TCCAATCCGATCTTAAACT-GGAATGAACTCCGTATGCCTAAGTCAACCCAC
*
10634030 GAAACGAGCGTACGGGCGCTCA
64 GAAACGAGCGTACGGGTGCTCA
10634052 ATCGGCCAGA
Statistics
Matches: 200, Mismatches: 39, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
157 5 0.03
158 88 0.44
159 106 0.53
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
CACAACCCTCGATCCAATCCGATCTTAAACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
AACGAGCGTACGGGTGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAGTC
CCCCTCTGCGTGCTGCCAGTCTCGCTGC
Found at i:10634370 original size:26 final size:26
Alignment explanation
Indices: 10634341--10634393 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10634331 CCGATCCGAT
10634341 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
10634367 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10634393 C
1 C
10634394 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10634861 original size:158 final size:156
Alignment explanation
Indices: 10634368--10634932 Score: 476
Period size: 158 Copynumber: 3.6 Consensus size: 156
10634358 CTCCGTATGC
* * * * * * *
10634368 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAACC
1 TTAGACGTGGAATGAACTCCATATGCCCAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * ** *
10634433 -GACCAGAGAGGCAGAATGCACAAGCTAGGGATCAGCCCGATCCCCCCTGCGTGCTGTTGATCCT
66 GGA-CAGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCTGCGTGCTGCAG-TCCC
* * * * * *
10634497 GCTGTCGCAACCCTTGGTCTGGTCT-GATC
129 GCTGCCACAACCCTCGATCCGG-CTGGA-A
* * * * * * * * * *
10634526 TTATAC-TGGGAATGAACTTCATTTGGCTAAGTCAACCTATGAAACGAGCTTGCGGGC-CTTGAG
1 TTAGACGT-GGAATGAACTCCATATGCCCAAGCCAACCCACGAAACGAGCGTGCGGGCGC-TCAG
* * * * * * * *
10634589 CCGGACAGAGAGGCATAACGCGTAAGCCGAGGATC-GACCCGGTCCCCCTTTGCGTGCTATCGGT
64 CCGGACAGAGAGGCAGAATGCGCAAGCTGGGGATCAG-CCCGGTCCCCC-CTGCGTGCT-GCAGT
* *
10634653 CCCGCTACGACAACCCTCGATCCGGCTAGGAA
126 CCCGCTGCCACAACCCTCGATCCGGCT-GGAA
* * *
10634685 TTAGATGTGGAATGAACTCCATATGCCCAAGCCAACCCACGAAACGTGCATGCGGGCGCTCAGCC
1 TTAGACGTGGAATGAACTCCATATGCCCAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* **
10634750 AGACAGAGAGGCAGAATATGCAAGCTGGGGATCAGCCCGGTCCCCCCTGCGTGCTGCCAGTCCCG
66 GGACAGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCTGCGTGCTG-CAGTCCCG
*
10634815 CTGCCACAACCCTCGATCCAGCTGGGAA
130 CTGCCACAACCCTCGATCCGGCT-GGAA
* * * * *
10634843 TTAGACGTGGAATGAACTCCCTATACCCAAGCCAACCCACAAAATGTA-CGTGCGGGCGTTCAGC
1 TTAGACGTGGAATGAACTCCATATGCCCAAGCCAACCCACGAAACG-AGCGTGCGGGCGCTCAGC
* * * *
10634907 TGGCCGGAGAGGCAGAATGCGTAAGC
65 CGGACAGAGAGGCAGAATGCGCAAGC
10634933 CGAGGATCGA
Statistics
Matches: 319, Mismatches: 75, Indels: 26
0.76 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 197 0.62
159 113 0.35
160 6 0.02
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (156 bp):
TTAGACGTGGAATGAACTCCATATGCCCAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GGACAGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCTGCGTGCTGCAGTCCCGC
TGCCACAACCCTCGATCCGGCTGGAA
Found at i:10634960 original size:158 final size:157
Alignment explanation
Indices: 10634587--10634991 Score: 436
Period size: 158 Copynumber: 2.6 Consensus size: 157
10634577 GCGGGCCTTG
* * * ** *
10634587 AGCCGGACAGAGAGGCATAACGCGTAAGCCGAGGATCGACCCGGTCCCCCTTTGCGTGCTATCGG
1 AGCCAGACAGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCCC--TGCGTGCTGCCAG
* * * *
10634652 TCCCGCTACGACAACCCTCGATCCGGCTAGGAATTAGATGTGGAATGAACTCCATATGCCCAAGC
64 TCCCGCTACCACAACCCTCGATCCAGCTAGGAATTAGACGTGGAATGAACTCCATATACCCAAGC
* *
10634717 CAACCCACGAAACGTGCATGCGGGCGCTC
129 CAACCCACAAAACGTACATGCGGGCGCTC
** * * *
10634746 AGCCAGACAGAGAGGCAGAATATGCAAGCTGGGGATC-AGCCCGGTCCCCCCTGCGTGCTGCCAG
1 AGCCAGACAGAGAGGCAGAATGCGTAAGCCGAGGATCGA-CCCGGT-CCCCCTGCGTGCTGCCAG
* * *
10634810 TCCCGCTGCCACAACCCTCGATCCAGCTGGGAATTAGACGTGGAATGAACTCCCTATACCCAAGC
64 TCCCGCTACCACAACCCTCGATCCAGCTAGGAATTAGACGTGGAATGAACTCCATATACCCAAGC
* * *
10634875 CAACCCACAAAATGTACGTGCGGGCGTTC
129 CAACCCACAAAACGTACATGCGGGCGCTC
** * * * * * *
10634904 AGCTGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACTCGATCCCTCCAGCGTGCTGTC-GA
1 AGCCAGACAGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCC-CCTGCGTGCTGCCAG-
* **
10634968 TCCTGCTACCGTAACCCTCGATCC
64 TCCCGCTACCACAACCCTCGATCC
10634992 GGTTTGATCT
Statistics
Matches: 201, Mismatches: 40, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
157 4 0.02
158 156 0.78
159 36 0.18
160 5 0.02
ACGTcount: A:0.24, C:0.33, G:0.27, T:0.17
Consensus pattern (157 bp):
AGCCAGACAGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCCCTGCGTGCTGCCAGTC
CCGCTACCACAACCCTCGATCCAGCTAGGAATTAGACGTGGAATGAACTCCATATACCCAAGCCA
ACCCACAAAACGTACATGCGGGCGCTC
Found at i:10635029 original size:26 final size:26
Alignment explanation
Indices: 10635000--10635052 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10634990 CCGGTTTGAT
10635000 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
10635026 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10635052 C
1 C
10635053 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10635952 original size:26 final size:26
Alignment explanation
Indices: 10635916--10635965 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
10635906 CCAGTCTGAT
*
10635916 CTTAGACTAGGAATGAACTCCGTACG
1 CTTAGACTAGGAATGAACTACGTACG
*
10635942 CTTAGACTAGGGATGAACTACGTA
1 CTTAGACTAGGAATGAACTACGTA
10635966 TGCCAAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACGTACG
Found at i:10636309 original size:170 final size:171
Alignment explanation
Indices: 10635942--10636309 Score: 381
Period size: 171 Copynumber: 2.2 Consensus size: 171
10635932 ACTCCGTACG
* * *
10635942 CTTAGACTAGGG-ATGAACTACGTATGCCAAAGTCAACCCACGAAAGGAGTGTGCGAGTGCTCAG
1 CTTAGACT-GGGAATGAACTACGTATGCCAAAGTCAACCCACAAAAGGAGCGTGCGAGCGCTCAG
* * *
10636006 TCGGCTGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCCACCCCCCTCTACATGCTGTCGATC
65 CCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCCACCCCCCTCTACATGCTATCGATC
* * **
10636071 CCGCTGCCGGTCCTGCTACCACAACCCTCAATTCGGCTGTGA
130 CCGCTGCCGGTCCTGCTACCACAACCCTCAATCCAGCTCCGA
* * *
10636113 CTTAGACAT-GGAATGAACTTCGTATGCCTAAG-CTAACCCACAAAATGAGCGTGC-AGGCGCTC
1 CTTAGAC-TGGGAATGAACTACGTATGCCAAAGTC-AACCCACAAAAGGAGCGTGCGA-GCGCTC
* * * * * * *
10636175 AGCCGG-TCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGA-TCCCCTTTACGTGCTATTG
63 AGCCGGCT-GGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCCACCCCCCTCTACATGCTATCG
* * * ** **
10636238 ATCCTGCTGCTGGTCTTGCTACCGTAACCCTCGGTCCAG-TCCGA
127 ATCCCGCTGCCGGTCCTGCTACCACAACCCTCAATCCAGCTCCGA
*
10636282 TCTTAGACTGGGAATGAACTCCGTATGC
1 -CTTAGACTGGGAATGAACTACGTATGC
10636310 TTAGACATGG
Statistics
Matches: 162, Mismatches: 28, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
169 4 0.02
170 73 0.45
171 84 0.52
172 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (171 bp):
CTTAGACTGGGAATGAACTACGTATGCCAAAGTCAACCCACAAAAGGAGCGTGCGAGCGCTCAGC
CGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCCACCCCCCTCTACATGCTATCGATCC
CGCTGCCGGTCCTGCTACCACAACCCTCAATCCAGCTCCGA
Found at i:10636312 original size:26 final size:26
Alignment explanation
Indices: 10636283--10636335 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10636273 CCAGTCCGAT
10636283 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
10636309 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10636335 C
1 C
10636336 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10638868 original size:26 final size:26
Alignment explanation
Indices: 10638831--10638881 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
10638821 CTCAAAATCC
*
10638831 TAGACTGAGAATGAACTCTGTATGCT
1 TAGACTGAGAATGAACTCCGTATGCT
10638857 TAGACATG-GAATGAACTCCGTATGC
1 TAGAC-TGAGAATGAACTCCGTATGC
10638882 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGACTGAGAATGAACTCCGTATGCT
Found at i:10639198 original size:158 final size:159
Alignment explanation
Indices: 10638854--10639198 Score: 389
Period size: 159 Copynumber: 2.2 Consensus size: 159
10638844 AACTCTGTAT
* * *
10638854 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGGAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAAGCGTGCGGGCACTCAG
* ** *
10638919 CTGGCCAGAGAGGCAGAATGGGCAAGACGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTC
66 CTGGCCAGAGAGGCAGAATGCGCAAGACAAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATC
* * *
10638984 CTGCTGCCACAACCCTCGGTTTGGCTGGG
131 CTGCTGCCACAACCCTCGGTTCGGCTCGA
* *
10639013 GCTTAGACATGGAATGAACT-CGCTATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGCACTCA
1 GCTTAGACATGGAATGAACTCCG-TATGCCTAAGCCAACCAATGAAACAAGCGTGCGGGCACTCA
* * * * *
10639077 G-TCGGTC-GAAGAGGTAGAATGCGCAAGCCAAGGATCGGCTCGG--CCCCTCTTGCGTGCTGTC
65 GCT-GGCCAG-AGAGGCAGAATGCGCAAGACAAGGATCGACCCGGTCCCCCTC-TGCGTGCTGTC
* * * *
10639138 GATCCTGCTGTCGCAACCCTTGGTTC-GATCCGA
127 GATCCTGCTGCCACAACCCTCGGTTCGGCT-CGA
*
10639171 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
10639199 TTAGACTGAG
Statistics
Matches: 157, Mismatches: 22, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
157 9 0.06
158 59 0.38
159 89 0.57
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAAGCGTGCGGGCACTCAG
CTGGCCAGAGAGGCAGAATGCGCAAGACAAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATC
CTGCTGCCACAACCCTCGGTTCGGCTCGA
Found at i:10639201 original size:26 final size:26
Alignment explanation
Indices: 10639172--10639224 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10639162 TCGATCCGAT
10639172 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
*
10639198 CTTAGACTGAGGATGAACTTCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
10639224 C
1 C
10639225 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:10639410 original size:26 final size:26
Alignment explanation
Indices: 10639381--10639433 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10639371 CCAGTCTGAT
10639381 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
10639407 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
10639433 C
1 C
10639434 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:10639586 original size:24 final size:24
Alignment explanation
Indices: 10639559--10639615 Score: 62
Period size: 26 Copynumber: 2.3 Consensus size: 24
10639549 CTTGATCCAA
*
10639559 TCCGATCTTAGACTGAGAATGAAC
1 TCCGATCTTAGACAGAGAATGAAC
* *
10639583 TCCGTATTCTTAGACAGGGTATGAAC
1 TCCG-A-TCTTAGACAGAGAATGAAC
10639609 TCC-ATCT
1 TCCGATCT
10639616 GCGTAAGTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
23 3 0.11
24 5 0.18
25 1 0.04
26 19 0.68
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (24 bp):
TCCGATCTTAGACAGAGAATGAAC
Found at i:10640188 original size:18 final size:16
Alignment explanation
Indices: 10640151--10640184 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
10640141 CGCACACCCC
*
10640151 CCGGCACCCCCAATCG
1 CCGGAACCCCCAATCG
10640167 CCGGAACCCCCAAT-G
1 CCGGAACCCCCAATCG
10640182 CCG
1 CCG
10640185 CCGGTTAGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.21, C:0.53, G:0.21, T:0.06
Consensus pattern (16 bp):
CCGGAACCCCCAATCG
Found at i:10641336 original size:355 final size:350
Alignment explanation
Indices: 10640619--10641324 Score: 831
Period size: 355 Copynumber: 2.0 Consensus size: 350
10640609 TCGCTGCTAT
* * *
10640619 AACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACTAAA
1 AACCCTCGGTTCGGCTGTGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* *
10640684 CGGACGTACGAGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCAGGGGATCGATCCGGTCCC
66 CGGACGTACGAGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCAGGGGATCGACCCGGTCCC
*
10640749 CCCTGGGTGCTGTCGATCCCGCTACCGCAATCGTCGATCCAGTCCGATCTTAGACTGGGAATCAA
131 CCCTGGGTGCTGTCGATCCCGCTACAGCAATCGTCGATCCAGTCCGATCTTAGACTGGGAATCAA
* * * * * *
10640814 CTCCGTATGCTTAGACTGGGGGATGAACTCTGTATGCCAAAGTCAACCCATGAAACGAGCGTGCG
196 CTCCGTATGCTGAGACT-GGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTACG
* * * * * * * *
10640879 AGTGCTTAGCCAATCGGAGAGGCATAACGCGTAAGTTGGGGATCAGCCCGACCCCCCCTACGTCC
260 AGCGCTCAGCCAATCGGAGAGGCAGAACGCGCAAGTCGAGGACCAGCCCGACACCCCCTACGTCC
10640944 TGCCGATCCCGCTGCCAGTCCTCCTGCCAC
325 TGCCGAT-CCGCTGCCA-TCCTCCTG-C-C
*
10640974 AACCCTCGGTTCGGCTGTGGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAA
1 AACCCTCGGTTCGGCTGTGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* * * * * *
10641039 CGAGA-GTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGGTCC
66 CG-GACGTACGAGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCAGGGGATCGACCCGGTCC
* * * * *
10641103 CCTCTGTGTGCTGTCGATCCTGCTACTAGTCCTATTGCTGTAACCGTTTGTCCAGTCCGATCTTA
130 CCCCTGGGTGCTGTCGATCCCGCTAC-AG--C-AAT-C-GT---CG---ATCCAGTCCGATCTTA
* * * *
10641168 GACTGGGATTGAACTCCGTATGCTGAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCGACG
183 GACTGGGAATCAACTCCGTATGCTGAGAC-TGGGAATGAACTCCGTATGCCAAAGCCAACCCACG
* * * *
10641232 AAACGAGCGTACGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGTCGAGGACCGGCCCGAT
247 AAACGAGCGTACGAGCGCTCAGCCAATCGGAGAGGCAGAACGCGCAAGTCGAGGACCAGCCCGA-
* *
10641297 CACCCCCTACGTGCTGTCGATCCTGCTG
311 CACCCCCTACGTCCTGCCGATCC-GCTG
10641325 TCGCAACCCT
Statistics
Matches: 293, Mismatches: 42, Indels: 20
0.83 0.12 0.06
Matches are distributed among these distances:
355 137 0.47
356 3 0.01
358 1 0.00
359 2 0.01
360 1 0.00
361 2 0.01
364 2 0.01
366 81 0.28
367 63 0.22
368 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (350 bp):
AACCCTCGGTTCGGCTGTGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
CGGACGTACGAGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCAGGGGATCGACCCGGTCCC
CCCTGGGTGCTGTCGATCCCGCTACAGCAATCGTCGATCCAGTCCGATCTTAGACTGGGAATCAA
CTCCGTATGCTGAGACTGGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTACGA
GCGCTCAGCCAATCGGAGAGGCAGAACGCGCAAGTCGAGGACCAGCCCGACACCCCCTACGTCCT
GCCGATCCGCTGCCATCCTCCTGCC
Found at i:10641644 original size:526 final size:522
Alignment explanation
Indices: 10640968--10642309 Score: 1327
Period size: 522 Copynumber: 2.6 Consensus size: 522
10640958 CCAGTCCTCC
* * *
10640968 TGCCACAACCCTCGGTTCGGCTGTGGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATAAACTCCGCATGCCTAAGCCAACCC
* * * * * **
10641033 ACGAAACGAGAGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCC
66 ACGAAACGACAGTACGGGCGCTCAACCGATCGGAAAGGCAGAATGAGCAAGCCGCAGATCGGCCC
*** * * * * ** *
10641098 GGTCCCCTCTGTGTGCTGTCGATCCTGCTACTAGTCCTATTGCTGTAACCGTTTGTCCAGTCCGA
131 GGTCCCCTCTGCCCGCTGTCGATCCTG-TACTAGTCCTACTGCCGCAACCCTCGGTCCAGTCCAA
*
10641163 TCTTAGACTGGGATTGAACTCCGTA-TGCTGAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
195 TCTTAGACTGGGAATGAACTCCGTATTG-TGAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* *
10641227 -CGACGAAACGAGCGTACGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGTCGAGGACCGG
259 AC-ACGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCG-GG---GG
**
10641291 CCCGATC-ACCCCCTA-CGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGATCTGATCTTAG
319 CCCGATCTACCCCC-AGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGATCTGATCTTAG
* *
10641354 ACAGGGAATGAACTCCGTATGCATAAGTCAAG-CCATGGAACAAGCGTGCAGGCGTTGAGCC-AG
383 ACAGGGAATGAACTCCGTATGCATAAGTC-AGCCCATGAAACAAGCGTGCAGGCGCTGAGCCGA-
*
10641417 CC-AGAGAGGCATAATACGTAAGCCAAGGATCTGCCCGGTCCCCCTCTGCATGCTGTCGATCCCG
446 CCGA-AAAGGCATAATACGTAAGCCAAGGATCTGCCCGGTCCCCCTCTGCATGCTGTCGATCCCG
10641481 CTATCGGTCCTGT
510 CTATCGGTCCTGT
* *
10641494 TGCCACAACTCTCGATTCGGCTGGGGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCC
1 TGCCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATAAACTCCGCATGCCTAAGCCAACCC
* * *
10641559 ATGAAACGACCGTACGGGCGCTCAACCGATCGGAAAGGCAGAATGAGCAAGCCGCAGATTGGCCC
66 ACGAAACGACAGTACGGGCGCTCAACCGATCGGAAAGGCAGAATGAGCAAGCCGCAGATCGGCCC
* * * * *
10641624 GGT-CCCTCCTGCCCGCTGTCGATCCTGTGCTGGTCCTGCTGCCGCAACCCTCGGTCCGGTCTAA
131 GGTCCCCT-CTGCCCGCTGTCGATCCTGTACTAGTCCTACTGCCGCAACCCTCGGTCCAGTCCAA
* * * *
10641688 TCTTAGACTGGGAATGAACTTCGTATTGTTAGACTTGGAATGAACTCCGTATGCCTGAGCCAACA
195 TCTTAGACTGGGAATGAACTCCGTATTGTGAGACATGGAATGAACTCCGTATGCCTAAGCCAACA
* * * * * * *
10641753 CACGAAACTAGCGTGCGGGCGTTCAGCTGACCGGAGAGGCAGAATGCGCAAGCCGTGGGCTCGGT
260 CACGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGGCCCGAT
* * * *
10641818 CTTCCCCCAGTGTGCTGTCGATCCTGCTACCGCAACCTTCGATCCGATCTGATCTTAGACTGGGA
325 CTACCCCCAGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACAGGGA
* * *
10641883 ATGAACTCCGTATGCATAAGTCAGCCCATGAAATAAGCGTGCGGGTGCTGAGCCGACCGAAAAGG
390 ATGAACTCCGTATGCATAAGTCAGCCCATGAAACAAGCGTGCAGGCGCTGAGCCGACCGAAAAGG
* * * * ** * * *
10641948 CATAATGCGTAAGTCAAGGATCAGCTCAATCCTCCTCTGCATACTGGC-AGTCCCGCTA------
455 CATAATACGTAAGCCAAGGATCTGCCCGGTCCCCCTCTGCATGCTGTCGA-TCCCGCTATCGGTC
10642006 ----
519 CTGT
* * *
10642006 --CCACAACCCTCG-GTCTGACTGGGGCTTAGACATGGAATGAACTCC-CTATGCCTAAGCCAAC
1 TGCCACAACCCTCGATTC-GGCTGGGGCTTAGACATGGAATAAACTCCGC-ATGCCTAAGCCAAC
* * * * * * * * * * * * ** *
10642067 CCATGAAACGGGCA-TGCGGGCACGCAGCTGGTCGGAGAGGTAGAATGTGCAAGTCGGGGATCGA
64 CCACGAAAC-GACAGTACGGGCGCTCAACCGATCGGAAAGGCAGAATGAGCAAGCCGCAGATCGG
* * ** *
10642131 CCCAGTCCCCCCTGCGTGCTGTCGATCCTG--CT-G--C-A-----GCAACCCTCAGTCCAGTCC
128 CCCGGTCCCCTCTGCCCGCTGTCGATCCTGTACTAGTCCTACTGCCGCAACCCTCGGTCCAGTCC
* * * * * * *
10642185 GATCTTAGACTGGGAATGAACTTCGTA-TGCTTAGAC-TAGGGATGAACTCTGTATGCATAAGTC
193 AATCTTAGACTGGGAATGAACTCCGTATTG-TGAGACAT-GGAATGAACTCCGTATGCCTAAGCC
* * * * * * * * *
10642248 AACCCACGAAACGAGCGTGCAGGCGCTGAGCCGACCGAAGAAGCATAATGCGTAAGTCGGGG
256 AACACACGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGG
10642310 ATCGGCCTGG
Statistics
Matches: 691, Mismatches: 110, Indels: 57
0.81 0.13 0.07
Matches are distributed among these distances:
498 3 0.00
499 118 0.17
505 1 0.00
507 1 0.00
508 2 0.00
509 3 0.00
510 120 0.17
511 5 0.01
521 11 0.02
522 154 0.22
523 2 0.00
524 1 0.00
525 133 0.19
526 137 0.20
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (522 bp):
TGCCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATAAACTCCGCATGCCTAAGCCAACCC
ACGAAACGACAGTACGGGCGCTCAACCGATCGGAAAGGCAGAATGAGCAAGCCGCAGATCGGCCC
GGTCCCCTCTGCCCGCTGTCGATCCTGTACTAGTCCTACTGCCGCAACCCTCGGTCCAGTCCAAT
CTTAGACTGGGAATGAACTCCGTATTGTGAGACATGGAATGAACTCCGTATGCCTAAGCCAACAC
ACGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGGCCCGATC
TACCCCCAGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACAGGGAA
TGAACTCCGTATGCATAAGTCAGCCCATGAAACAAGCGTGCAGGCGCTGAGCCGACCGAAAAGGC
ATAATACGTAAGCCAAGGATCTGCCCGGTCCCCCTCTGCATGCTGTCGATCCCGCTATCGGTCCT
GT
Found at i:10641727 original size:26 final size:26
Alignment explanation
Indices: 10641690--10641739 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
10641680 CGGTCTAATC
*
10641690 TTAGACTGGGAATGAACTTCGTATTG
1 TTAGACTGGGAATGAACTCCGTATTG
*
10641716 TTAGACTTGGAATGAACTCCGTAT
1 TTAGACTGGGAATGAACTCCGTAT
10641740 GCCTGAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATTG
Found at i:10642229 original size:26 final size:26
Alignment explanation
Indices: 10642188--10642240 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
10642178 CCAGTCCGAT
10642188 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
10642214 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
10642240 C
1 C
10642241 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:10643445 original size:61 final size:57
Alignment explanation
Indices: 10643357--10643528 Score: 231
Period size: 58 Copynumber: 2.9 Consensus size: 57
10643347 NNTTTTTTGA
10643357 GGAAAAGTTGAAAGTATCAATTTTCCTTGAAATCAAAATTTTCCAAAAAAAATATTTTTAG
1 GGAAAAGTTGAAAGTATCAATTTTCCTTGAAAT-AAAATTTTCC---AAAAATATTTTTAG
*
10643418 GGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAGTTTCCAAAAATATTTTTAG
1 GGAAAAGTTGAAAGTATCAATTTTCCTTG-AAATAAAATTTTCCAAAAATATTTTTAG
* * * *
10643476 GGAAATGTTGAAGGTATCAATTTTCCTT-AAAAAAAATTTT-AAAAAATCATTTT
1 GGAAAAGTTGAAAGTATCAATTTTCCTTGAAATAAAATTTTCCAAAAAT-ATTTT
10643529 GCATTGAAGT
Statistics
Matches: 103, Mismatches: 6, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
55 6 0.06
56 15 0.15
58 40 0.39
61 38 0.37
62 4 0.04
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.35
Consensus pattern (57 bp):
GGAAAAGTTGAAAGTATCAATTTTCCTTGAAATAAAATTTTCCAAAAATATTTTTAG
Found at i:10644434 original size:26 final size:26
Alignment explanation
Indices: 10644396--10644448 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10644386 GGCTCAAAAT
10644396 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10644422 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10644448 C
1 C
10644449 CGAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10644815 original size:159 final size:157
Alignment explanation
Indices: 10644421--10644848 Score: 439
Period size: 159 Copynumber: 2.7 Consensus size: 157
10644411 AACTCCGTAT
*
10644421 GCTTAGACATGGAATGAACTCCGTATGCCGAAGCCAACCCACGAAACCAGAGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-CAGAGTGCGGGCGCTCAG
* * * *
10644486 CCGGTCGGAGAGGCAGAATGGGCAAGTCGGGGATCGG-CCTAGTCTCCCCTGCATGCTGTCGATC
65 TCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGA-TCCCCCCTGCATGCTGTCGATC
* * **
10644550 CTGCTGCCGCAACCCTTGGTCCAGTCCGA
129 CCGCTGCCACAACCCTCAGTCCAGTCCGA
* * * * * * * * * *
10644579 TCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAATGAGCGTGCAGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-CAGAGTGCGGGCGCTCA
* * * * * *
10644643 GTCGGCCGAAGAGGCATAATACGCAAGTCGAGGATCGGCCCGATCCCCCTCTGCTTGCTGTC-AG
64 GTCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCC-CTGCATGCTGTCGA-
* ** *
10644707 TCCCGCTGCCACAACCCTCAGTCCGGTTGGG
127 TCCCGCTGCCACAACCCTCAGTCCAGTCCGA
* * *
10644738 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGATGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGA-GTGCGGGCGCTCAG
* * * * *
10644803 TCGGTTGGAGAGGTAGAATGTGCATGTCGGGGATCGGCCCGGTCCC
65 TCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCC
10644849 TCCTACGTGC
Statistics
Matches: 211, Mismatches: 53, Indels: 11
0.77 0.19 0.04
Matches are distributed among these distances:
157 1 0.00
158 88 0.42
159 121 0.57
160 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGTGCGGGCGCTCAGT
CGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCTGCATGCTGTCGATCCC
GCTGCCACAACCCTCAGTCCAGTCCGA
Found at i:10644923 original size:158 final size:156
Alignment explanation
Indices: 10644422--10644923 Score: 454
Period size: 158 Copynumber: 3.2 Consensus size: 156
10644412 ACTCCGTATG
*
10644422 CTTAGACAT-GGAATGAACTCCGTATGCCGAAGCCAACCCACGAAACCAGAGTGCGGGCGCTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-CAGAGTGCGGGCGCTCAG
* * **
10644486 CCGGTCGGAGAGGCAGAATGGGCAAGTCGGGGATCGGCCTAGTCTCCCCTGCATGCTGTCGATCC
64 TCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTC-CCCCTGCATGCTGTCGATCC
*
10644551 TGCTGCCGCAACCCTTGGTCC-AGTCCGAT
128 TGCTGCCGCAACCCTCGGTCCGA-TCCGAT
* * * * * * * * * *
10644580 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAATGAGCGTGCAGGCGTTGAGT
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-CAGAGTGCGGGCGCTCAGT
* * * * * * *
10644645 CGGCCGAAGAGGCATAATACGCAAGTCGAGGATCGGCCCGATCCCCCTCTGCTTGCTGTC-AGTC
65 CGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGT-CCCC-CTGCATGCTGTCGA-TC
* * * * ** **
10644709 CCGCTGCCACAACCCTCAGTCCGGTTGGGG
127 CTGCTGCCGCAACCCTCGGTCCGATCCGAT
* * *
10644739 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGATGTGCGGGCACTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGA-GTGCGGGCGCTCAG
* * * * * * **
10644803 TCGGTTGGAGAGGTAGAATGTGCATGTCGGGGATCGGCCCGGTCCCTCCTACGTGCTACCGATCC
64 TCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCC-CCTGCATGCTGTCGATCC
* * *
10644868 TACTGTCGCAACCCTCGGTCCGATCCAAT
128 TGCTGCCGCAACCCTCGGTCCGATCCGAT
* *
10644897 CTTAGATTGGGAATGAACTCCATATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
10644924 TTAGACCGGG
Statistics
Matches: 262, Mismatches: 72, Indels: 20
0.74 0.20 0.06
Matches are distributed among these distances:
157 2 0.01
158 143 0.55
159 116 0.44
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (156 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGTGCGGGCGCTCAGTC
GGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTGCATGCTGTCGATCCTGC
TGCCGCAACCCTCGGTCCGATCCGAT
Found at i:10646187 original size:26 final size:26
Alignment explanation
Indices: 10646158--10646207 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
10646148 CCGATCCAAT
*
10646158 CTTAGCCTAGGAATGAACTCCGTAAG
1 CTTAGACTAGGAATGAACTCCGTAAG
* * *
10646184 CTTAGATTGGGGATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
10646208 TGCCTAAGTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTAAG
Found at i:10646892 original size:26 final size:26
Alignment explanation
Indices: 10646856--10646908 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10646846 CCGGTCTGAT
10646856 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
10646882 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
10646908 C
1 C
10646909 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10647906 original size:158 final size:158
Alignment explanation
Indices: 10647604--10647897 Score: 362
Period size: 158 Copynumber: 1.9 Consensus size: 158
10647594 AACTCTGTAT
* * *
10647604 GCTTAGATATAGAATGAACGTCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGCGCTCAA
1 GCTTAGACATAGAATGAACGTCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAA
* * * *
10647669 CCGGTCGAGAGGCAGAATGCGCAAACCGGGGATCGACCAGGTCCCCCTCTACGTACCGCTGGTCC
66 CCGGTCGAGAGGCAGAATGCACAAACCAGGGATCGACCAGGTCCCCCTCTACGTACCGCCGATCC
10647734 TGCTACCACAACCCTAGTTCTGACTGGG
131 TGCTACCACAACCCTAGTTCTGACTGGG
* *
10647762 GCTTAGACATGGAATGAAC-TCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCGCTCA
1 GCTTAGACATAGAATGAACGT-CCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCA
* * * * * * * * *
10647826 GCCGGTAGGATAGGTAGAATGCACAAGCTAGGGATC-AGCTC-GGTCCCCC-CTGCGTGCTGCCG
65 ACCGGT-CGAGAGGCAGAATGCACAAACCAGGGATCGA-C-CAGGTCCCCCTCTACGTACCGCCG
10647888 ATCCTGCTAC
127 ATCCTGCTAC
10647898 TGTAACCCTC
Statistics
Matches: 114, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
157 1 0.01
158 81 0.71
159 31 0.27
160 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATAGAATGAACGTCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAA
CCGGTCGAGAGGCAGAATGCACAAACCAGGGATCGACCAGGTCCCCCTCTACGTACCGCCGATCC
TGCTACCACAACCCTAGTTCTGACTGGG
Found at i:10647950 original size:26 final size:26
Alignment explanation
Indices: 10647921--10647973 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10647911 CTGATCTGAT
* *
10647921 CTTAGATTGGGGATAAACTCTGTATG
1 CTTAGACTGGGGATAAACTCCGTATG
*
10647947 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATAAACTCCGTATG
10647973 C
1 C
10647974 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGATAAACTCCGTATG
Found at i:10648511 original size:158 final size:156
Alignment explanation
Indices: 10648035--10648582 Score: 442
Period size: 158 Copynumber: 3.5 Consensus size: 156
10648025 TGATCGGGGT
* ** * * * * * *
10648035 GGCAGAATGCGTAAGCCGAGGATCGAGCCAATCCCCCCCTTCGTGCTGTCGGT-CTCACTGCCAC
1 GGCAGAATGCGCAAAACGAGGATCGACCCGATCCACCACTACGTGCTGTCGGTCCT-GCTGCCAC
* * ** * *
10648099 AATCCTCGATCTGATTGGGGCTTAGACTTGGAATGAGCTCCTTATGCCTAAGCCAACCCACGAAA
65 AACCCTCGGTCTGGCTGGGG-TTAGAC-TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * *
10648164 CGGACGTGCGGGCGCTCAGCCGGTCGGAGA
128 CGGGCGTGCGGGTGCTCAG-CGGCCGGAGA
* * ** ** * * * * * * * *
10648194 GGTAGAATGCACAAGTCGAGGATCGGGCTGGTCCCCCCCTTCGTGCTGTTGATCCTGCTGCCGCA
1 GGCAGAATGCGCAAAACGAGGATCGACCCGATCCACCACTACGTGCTGTCGGTCCTGCTGCCACA
**** * * *
10648259 ACCCTCGGT-TCGGTCTGATCATAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAA
66 ACCCTCGGTCT-GG-CTGGGGTTAGACT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * *
10648323 CGAGCGT-CGGGTGCTGAGCTGGCCGTAGA
128 CGGGCGTGCGGGTGCTCAGC-GGCCGGAGA
* *
10648352 GGCATAATGTGCAAAACG-GAGATCGACCCGATCCACCACTACGTGCTGTCGGTCCTGCTGCCAC
1 GGCAGAATGCGCAAAACGAG-GATCGACCCGATCCACCACTACGTGCTGTCGGTCCTGCTGCCAC
* *
10648416 AACCCTCGGTCTGGCTGGGGTTAGACATGGAATGAACTCCCAATGCCTAAGCCAAACCACGAAAC
65 AACCCTCGGTCTGGCTGGGGTTAGAC-TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
*
10648481 GGGCGTGCGGGTGCTCAGTCGACCGGAGA
129 GGGCGTGCGGGTGCTCAG-CGGCCGGAGA
** * * * * ** *
10648510 GGCAGAATGCGCAAGCCAAGGATCGACCCGATCC-CC-CTTACGTGCCGCCGATCCTGCTATCGC
1 GGCAGAATGCGCAAAACGAGGATCGACCCGATCCACCAC-TACGTGCTGTCGGTCCTGCTGCCAC
10648573 AACCCTCGGT
65 AACCCTCGGT
10648583 TCGATGCTTA
Statistics
Matches: 307, Mismatches: 70, Indels: 26
0.76 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 78 0.25
158 121 0.39
159 103 0.34
160 4 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (156 bp):
GGCAGAATGCGCAAAACGAGGATCGACCCGATCCACCACTACGTGCTGTCGGTCCTGCTGCCACA
ACCCTCGGTCTGGCTGGGGTTAGACTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
GCGTGCGGGTGCTCAGCGGCCGGAGA
Found at i:10648605 original size:15 final size:15
Alignment explanation
Indices: 10648585--10648615 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
10648575 CCCTCGGTTC
10648585 GATGCTTAGACTGGG
1 GATGCTTAGACTGGG
10648600 GATGCTTAGACTGGG
1 GATGCTTAGACTGGG
10648615 G
1 G
10648616 TTAGACTAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.13, G:0.42, T:0.26
Consensus pattern (15 bp):
GATGCTTAGACTGGG
Found at i:10648645 original size:26 final size:26
Alignment explanation
Indices: 10648616--10648667 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10648606 TAGACTGGGG
10648616 TTAGACTAGGAATGAACTCTC-TATGC
1 TTAGACTAGGAATGAACT-TCGTATGC
* *
10648642 TTAGACTGGGGATGAACTTCGTATGC
1 TTAGACTAGGAATGAACTTCGTATGC
10648668 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTTCGTATGC
Found at i:10649189 original size:26 final size:26
Alignment explanation
Indices: 10649158--10649209 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10649148 CCGGTCTGAT
10649158 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
10649184 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10649210 TCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10649686 original size:26 final size:26
Alignment explanation
Indices: 10649657--10649709 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10649647 CCGGTCTAAT
10649657 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
10649683 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
10649709 C
1 C
10649710 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:10650396 original size:159 final size:156
Alignment explanation
Indices: 10650063--10650500 Score: 475
Period size: 159 Copynumber: 2.8 Consensus size: 156
10650053 AACTCCGTAT
* * * *
10650063 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATAAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTGCTCAG
* * * *
10650128 CCGACCGAGAGGTAAAATGCGCAAGCCGGAGATCGGCCTGGTCCCACCCTGCGTGCTGTCGATCC
66 CCGACCGAGAGGCAAAATGCGCAAGCCGG-GATCGGCCCGATCCC-CCCTGCGTGCCGTCGATCC
* *
10650193 TACTATCACAACCCTCACTCCAGTCCGA
129 CACTACCACAACCCTCACTCCAGTCCGA
* * * *
10650221 TCTTAGAC-TAGAAATGAACTCCGTATGCCTAAGTCAACCCATAAAACAAGCGTGCGGGTGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTGCTCA
* * * *
10650285 GCCGACCGTAGAGGCATAATGTGCAAGCCAAGGATCGGCCCGATCCCCCTCTGTGTGCCGTCGAT
65 GCCGACCG-AGAGGCAAAATGCGCAAGCC-GGGATCGGCCCGATCCCCC-CTGCGTGCCGTCGAT
* ** * * *
10650350 CCCGCTACCACAACCCTCGGTCC-GGCTGGG
127 CCCACTACCACAACCCTCACTCCAGTC-CGA
* * ** *
10650380 GCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGGGCGTGCGAGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTGCTCAG
* * * * *
10650445 CCGGTCGGAGAGGCAAAATGCGTAAGCTGGGGATCGACCCGATCCCCCCTGCGTGC
66 CC-GACCGAGAGGCAAAATGCGCAAGC-CGGGATCGGCCCGATCCCCCCTGCGTGC
10650501 TACCGTTCCT
Statistics
Matches: 230, Mismatches: 42, Indels: 16
0.80 0.15 0.06
Matches are distributed among these distances:
157 1 0.00
158 73 0.32
159 151 0.66
160 5 0.02
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTGCTCAG
CCGACCGAGAGGCAAAATGCGCAAGCCGGGATCGGCCCGATCCCCCCTGCGTGCCGTCGATCCCA
CTACCACAACCCTCACTCCAGTCCGA
Found at i:10650568 original size:26 final size:26
Alignment explanation
Indices: 10650539--10650588 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
10650529 CTGGTTAGAT
10650539 CTTAGACTGGGA-ATGAACTCTGTACG
1 CTTAGA-TGGGAGATGAACTCTGTACG
*
10650565 CTTAGATTGGAGATGAACTCTGTA
1 CTTAGATGGGAGATGAACTCTGTA
10650589 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATGGGAGATGAACTCTGTACG
Found at i:10650727 original size:184 final size:184
Alignment explanation
Indices: 10650380--10650779 Score: 468
Period size: 184 Copynumber: 2.2 Consensus size: 184
10650370 TCCGGCTGGG
** *
10650380 GCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGGGCGTGCGAGTGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGTGCTCAG
** * **
10650445 CCGGTCGGAGAGGCAAAATGCGTAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTACCGTTCC
66 CCGACCGGAGAGGCAAAATGCGTAAGCTGGGGATCGACCAGATCCCCCCTGCGTGCTACCAATCC
* * * *
10650510 TGCTATCGTAACCCACGGTCTGGTTAGATCTTAGACTGGGAATGAAC-TCTGTAC
131 TGCTATCGTAACCCACGATCCGATCAGATCTTAGACTGGGAATGAACTTC-GTAC
* * * *
10650564 GCTTAGA-TTGGAGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGATCGTGTGGGTGCTCA
1 GCTTAGACATGGA-ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGTGCTCA
* * * * * **
10650628 GCTGACCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCTAG-TCCTCCTTGCGTGCTGTCAAT
65 GCCGACCGGAGAGGCAAAATGCGTAAGCTGGGGATCGACC-AGATCCCCCCTGCGTGCTACCAAT
* ** *
10650692 CCTGCTGTCGTAACCCTTGATCCGATCCA-ATCTTAGACTGGGAATGAACTTCGTAT
129 CCTGCTATCGTAACCCACGATCCGAT-CAGATCTTAGACTGGGAATGAACTTCGTAC
*
10650748 GCTTAGACATGGAATAAACT-TCGTATGCCTAA
1 GCTTAGACATGGAATGAACTCT-GTATGCCTAA
10650780 ACGAGCGTAC
Statistics
Matches: 181, Mismatches: 29, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
183 5 0.03
184 168 0.93
185 8 0.04
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.24
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGTGCTCAG
CCGACCGGAGAGGCAAAATGCGTAAGCTGGGGATCGACCAGATCCCCCCTGCGTGCTACCAATCC
TGCTATCGTAACCCACGATCCGATCAGATCTTAGACTGGGAATGAACTTCGTAC
Found at i:10650761 original size:26 final size:26
Alignment explanation
Indices: 10650723--10650775 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10650713 CCGATCCAAT
*
10650723 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
10650749 CTTAGACAT-GGAATAAACTTCGTATG
1 CTTAGAC-TGGGAATAAACTTCGTATG
10650775 C
1 C
10650776 CTAAACGAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCGTATG
Found at i:10651066 original size:673 final size:676
Alignment explanation
Indices: 10650006--10651336 Score: 1663
Period size: 673 Copynumber: 2.0 Consensus size: 676
10649996 TTGCTGCTGG
* * *
10650006 TCCTGCTGTCGTAACCCTCGATCTGGTCAGATCTTAGATTGGAAATAAACTCCGTATGCTTAGAC
1 TCCTGCTGTCGTAACCCTCGATCCGATCAGATCTTAGACTGGAAATAAACTCCGTATGCTTAGAC
* *
10650071 ATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATAAGCGTGCGGGCGCTCAGCCGACCGA
66 ATGGAATAAACTTCGTATGCCTAA--CAA-CCA-G----AAGCGTACGGGCGCTCAGCCGACCGA
* * * ** * * *
10650136 GAGGTAAAATGCGCAAGCCGGAGATCGGCCTGGTCCCACCCTGCGTGCTGTCGATCCTACTATCA
123 GAGGCAAAATGCGCAAGCCGGAGACCGACCCAGTCCCACCCTACGTGCTGTCAATCCTACTAGCA
* * *
10650201 CAACCCTCACTCCAGTCCGATCTTAGACTAGAAATGAACTCCGTATGCCTAAGTCAACCCATAAA
188 CAACCCTCACTCCAGTCCGATCTTAGACTAGAAATGAACTCCATATGCCTAACTCAACCCACAAA
* **
10650266 ACAAGCGTGCGGGTGCTAAGCCGACCGTAGAGGCATAATGTGCAAGCCAAGGATCGGCCCGATCC
253 ACAAGCGTGCGGGTGCTAAGCCGACCGGAGAGGCATAATGCACAAGCCAAGGATCGGCCCGATCC
10650331 CCCTCTGTGTGCCGTCGATCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATG
318 CCCTCTGTGTGCCGTCGATCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATG
* * * *
10650396 AACTCCCTATGCCTAAGTCAACCCACGAAACGGGCGTGCGAGTGCTCAGCCGGTCGGAGAGGCAA
383 AACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGAGCGCTCAACCGGCCGGAGAGGCAA
* * * * *
10650461 AATGCGTAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTACCGTTCCTGCTATCGTAACCCAC
448 AATACGCAAGCTGGGGATCGACCCGATCCCCCCTGCATGCTACCGATCCTGCTATCGCAACCCAC
* * *
10650526 GGTCTGGT-TAGATCTTAGACTGGGAATGAACTCTGTACGCTTAGATTGGAGATGAACTCTGTAT
513 GGTCCGGTCT-GATCTTAG-CTGGGAATGAACTCTATACGCTTAGACTGGAGATGAACTCTGTAT
* * * * ** * *
10650590 GCCTAAGTCAACCCACGAAACGATCGTGTGGGTGCTCAGCTGACCGGAGAGGCAGAATGCGTAAG
576 GCCTAAGTCAACCCACCAAACGAGCATGCGGACGCTCAGCCGACCAGAGAGGCAGAATGCGTAAG
* *
10650655 CTGGGGATCGGCCTAGTCCTCCTTGCGTGCTGTCAA
641 CCGAGGATCGGCCTAGTCCTCCTTGCGTGCTGTCAA
* * * *
10650691 TCCTGCTGTCGTAACCCTTGATCCGATCCA-ATCTTAGACTGGGAATGAACTTCGTATGCTTAGA
1 TCCTGCTGTCGTAACCCTCGATCCGAT-CAGATCTTAGACTGGAAATAAACTCCGTATGCTTAGA
* *
10650755 CATGGAATAAACTTCGTATGCCT-A-AA-C-G-AGCGTACGGGCGCTCAGCCAGTCGGAGAGGCA
65 CATGGAATAAACTTCGTATGCCTAACAACCAGAAGCGTACGGGCGCTCAGCC-GACCGAGAGGCA
* * * * *
10650815 GAATGCGCAAGCCGGGGACCGACCCAGTCCCCCCCTACGTGCTGTCAATCCTATTAGCGCAACCC
129 AAATGCGCAAGCCGGAGACCGACCCAGTCCCACCCTACGTGCTGTCAATCCTACTAGCACAACCC
* * * * * *
10650880 TCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCCTAACTCAACCCACGAAACAAG
194 TC-ACTCCAGTCCGATCTTAGACTAGAAATGAACTCCATATGCCTAACTCAACCCACAAAACAAG
* * * ** **** *
10650944 TGTTCGGGTGCTGAGCCGGTCGGAGAGGCATAATGCACAAGTTGGGGATCGGCCCGGTCCCCCTC
258 CGTGCGGGTGCTAAGCCGACCGGAGAGGCATAATGCACAAGCCAAGGATCGGCCCGATCCCCCTC
* * * * *
10651009 T-TCGTGCTGTCGGTCCTGTTACCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACT
323 TGT-GTGCCGTCGATCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACT
* * * *
10651073 CCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATA
387 CCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGAGCGCTCAACCGGCCGGAGAGGCAAAATA
* * * * ** * **
10651138 CGCAAGCTGGGGATTGGCCCGGTCCCCCCTTCATGCTGTCGATCCTGCTGTCGCAACCTTCGGTC
452 CGCAAGCTGGGGATCGACCCGATCCCCCCTGCATGCTACCGATCCTGCTATCGCAACCCACGGTC
*
10651203 CGGTCTGATCTTAGCTGGGAATGAACTCTATACGCTTAGACTGGGGATGAACTCTGTATGCCTAA
517 CGGTCTGATCTTAGCTGGGAATGAACTCTATACGCTTAGACTGGAGATGAACTCTGTATGCCTAA
* * *
10651268 GTCAACCTACCAAATGAGCATGCGGACGCTCAGCCGACCAGAGAGGCAGGATGCGTAAGCCGAGG
582 GTCAACCCACCAAACGAGCATGCGGACGCTCAGCCGACCAGAGAGGCAGAATGCGTAAGCCGAGG
10651333 ATCG
647 ATCG
10651337 AACGGTTGGT
Statistics
Matches: 551, Mismatches: 90, Indels: 23
0.83 0.14 0.03
Matches are distributed among these distances:
672 123 0.22
673 343 0.62
674 2 0.00
677 1 0.00
679 1 0.00
681 2 0.00
684 1 0.00
685 76 0.14
686 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (676 bp):
TCCTGCTGTCGTAACCCTCGATCCGATCAGATCTTAGACTGGAAATAAACTCCGTATGCTTAGAC
ATGGAATAAACTTCGTATGCCTAACAACCAGAAGCGTACGGGCGCTCAGCCGACCGAGAGGCAAA
ATGCGCAAGCCGGAGACCGACCCAGTCCCACCCTACGTGCTGTCAATCCTACTAGCACAACCCTC
ACTCCAGTCCGATCTTAGACTAGAAATGAACTCCATATGCCTAACTCAACCCACAAAACAAGCGT
GCGGGTGCTAAGCCGACCGGAGAGGCATAATGCACAAGCCAAGGATCGGCCCGATCCCCCTCTGT
GTGCCGTCGATCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCT
ATGCCTAAGCCAACCCACGAAACGGGCGTGCGAGCGCTCAACCGGCCGGAGAGGCAAAATACGCA
AGCTGGGGATCGACCCGATCCCCCCTGCATGCTACCGATCCTGCTATCGCAACCCACGGTCCGGT
CTGATCTTAGCTGGGAATGAACTCTATACGCTTAGACTGGAGATGAACTCTGTATGCCTAAGTCA
ACCCACCAAACGAGCATGCGGACGCTCAGCCGACCAGAGAGGCAGAATGCGTAAGCCGAGGATCG
GCCTAGTCCTCCTTGCGTGCTGTCAA
Found at i:10651092 original size:159 final size:158
Alignment explanation
Indices: 10650778--10651230 Score: 464
Period size: 159 Copynumber: 2.9 Consensus size: 158
10650768 TCGTATGCCT
* * * * * * *
10650778 AAACGAGCGTACGGGCGCTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCAGT
1 AAACAAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGT
* * * * * *
10650843 CCCCCCCTACGTGCTGTCAATCCTATTAGCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAA
66 -CCCCCCTTCGTGCTGTCGATCCTGTTACCACAACCCTCGATCCGGTCTGAGCTTAGACTGGGAA
*
10650908 TGAACTCTATATGCCTAACTCAACCCACG
130 TGAACTCCATATGCCTAACTCAACCCACG
* * * * * * *
10650937 AAACAAGTGTTCGGGTGCTGAGCCGGTCGGAGAGGCATAATGCACAAGTTGGGGATCGGCCCGGT
1 AAACAAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGT
* * *
10651002 CCCCCTCTTCGTGCTGTCGGTCCTGTTACCACAACCCTCGGTCCGGT-TGGGGCTTAGACAT-GG
66 CCCCC-CTTCGTGCTGTCGATCCTGTTACCACAACCCTCGATCCGGTCT-GAGCTTAGAC-TGGG
* *
10651065 AATGAACTCCCTATGCCTAAGC-CAACCCATG
128 AATGAACTCCATATGCCTAA-CTCAACCCACG
*** * * * *
10651096 AAATGGGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATACGCAAGCTGGGGATTGGCCCGGT
1 AAACAAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGT
* * ** * * * *
10651161 CCCCCCTTCATGCTGTCGATCCTGCTGTCGCAACCTTCGGTCCGGTCTGATCTTAG-CTGGGAAT
66 CCCCCCTTCGTGCTGTCGATCCTGTTACCACAACCCTCGATCCGGTCTGAGCTTAGACTGGGAAT
10651225 GAACTC
131 GAACTC
10651231 TATACGCTTA
Statistics
Matches: 240, Mismatches: 48, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
156 1 0.00
157 12 0.05
158 46 0.19
159 179 0.75
160 2 0.01
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
AAACAAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGT
CCCCCCTTCGTGCTGTCGATCCTGTTACCACAACCCTCGATCCGGTCTGAGCTTAGACTGGGAAT
GAACTCCATATGCCTAACTCAACCCACG
Found at i:10652295 original size:26 final size:26
Alignment explanation
Indices: 10652266--10652318 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10652256 CCGGTCTGAT
10652266 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10652292 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10652318 C
1 C
10652319 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10653343 original size:158 final size:158
Alignment explanation
Indices: 10653013--10653356 Score: 431
Period size: 158 Copynumber: 2.2 Consensus size: 158
10653003 AACTCTGTAT
*
10653013 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
10653078 ACGACCGGAGAGGCAGAATGCGGAAGCTGGGGATCGGCCCGATCCACCTCTGCGTGCTGTCGGTC
66 ACGACCAGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCACCCCTGCGTGCTGCCGATC
* * * * *
10653143 CCGCTACCGCTACCCTTGTCCGACTGGG
131 CCGCTACCACAACCCTGGTCCGACTCGA
* *
10653171 GCTTATACATGGAATGAACTCCCTCTGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * ** *
10653236 CCGACCAGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCC-CCCCTTTGTGTTGCCGATC
66 ACGACCAGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCACCCCTGCGTGCTGCCGATC
* * * **
10653300 CTGCTACCACAACCGTCGGTCTGGTTCGA
131 CCGCTACCACAACCCT-GGTCCGACTCGA
* *
10653329 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCCTATGC
10653357 TTAGACTAGG
Statistics
Matches: 157, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
157 26 0.17
158 131 0.83
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
ACGACCAGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCACCCCTGCGTGCTGCCGATC
CCGCTACCACAACCCTGGTCCGACTCGA
Found at i:10653777 original size:26 final size:26
Alignment explanation
Indices: 10653748--10653800 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10653738 CCGGTCTGAT
10653748 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10653774 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10653800 C
1 C
10653801 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10654223 original size:21 final size:21
Alignment explanation
Indices: 10654197--10654245 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
10654187 GAGGATCCGT
10654197 TCGGTCCCCCTCTGCATGCTG
1 TCGGTCCCCCTCTGCATGCTG
*
10654218 TCGGTCCCCCTCTGCGTGCTG
1 TCGGTCCCCCTCTGCATGCTG
10654239 TCGGTCC
1 TCGGTCC
10654246 TGCTGCCACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.02, C:0.43, G:0.27, T:0.29
Consensus pattern (21 bp):
TCGGTCCCCCTCTGCATGCTG
Found at i:10655701 original size:26 final size:26
Alignment explanation
Indices: 10655650--10655702 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
10655640 GGCTCAAACT
* *
10655650 CTTAGACTGGGAAGGAACTTCGTATG
1 CTTAGACTGGGAAGGAACTCCATATG
*
10655676 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAAGGAACTCCATATG
10655702 C
1 C
10655703 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCATATG
Found at i:10656033 original size:26 final size:26
Alignment explanation
Indices: 10655993--10656044 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
10655983 CAATTTGATA
*
10655993 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCCTATGC
*
10656019 TTAGACTGGGGATGAACTCCCTATGC
1 TTAGACTGGGAATGAACTCCCTATGC
10656045 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCCTATGC
Found at i:10656346 original size:197 final size:197
Alignment explanation
Indices: 10655988--10656346 Score: 440
Period size: 197 Copynumber: 1.8 Consensus size: 197
10655978 CTGTCCAATT
* *
10655988 TGATATTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCCTATGCCTAAGCCA
1 TGATATTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
** * * * ** *
10656053 ACCCATGAAACGAGCGTGTGGGTGCTCAGCCGGTTGGAGAGGTAGAATGCGTAAGCTGGGGATCG
66 ACCCACAAAACGAGCGTGTGGGCGCTCAGCCGGCTGGAGAGGCAGAATGCACAAGCTGAGGATCG
* *
10656118 ACCTGATCCCTCCCTGCATGCTGTCGATCCTGCTGCTAGTCCTACTGTCGTAAGCCTCTGTCCGG
131 ACCAGATCCCCCCCTGCATGCTGTCGATCCTGCTGCTAGTCCTACTGTCGTAAGCCTCTGTCCGG
10656183 TC
196 TC
* * *
10656185 TGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-TGAATGAACTCCATATGCCTAAGCC
1 TGATATTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCC
* * *
10656249 AACCCACAAAACGAGTGT-TCGGGCGCTCAGTCGGCCT-GAGAGGCAGAATGCACAAG-TCGATG
65 AACCCACAAAACGAGCGTGT-GGGCGCTCAGCCGG-CTGGAGAGGCAGAATGCACAAGCT-GAGG
* * * *
10656311 ACTGGCCCAG-TCCCCCCCTGCGTGCTGTTGATCCTG
127 A-TCGACCAGATCCCCCCCTGCATGCTGTCGATCCTG
10656347 TTGTCGTAAC
Statistics
Matches: 135, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
196 2 0.01
197 126 0.93
198 7 0.05
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (197 bp):
TGATATTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
ACCCACAAAACGAGCGTGTGGGCGCTCAGCCGGCTGGAGAGGCAGAATGCACAAGCTGAGGATCG
ACCAGATCCCCCCCTGCATGCTGTCGATCCTGCTGCTAGTCCTACTGTCGTAAGCCTCTGTCCGG
TC
Found at i:10656712 original size:26 final size:26
Alignment explanation
Indices: 10656671--10656723 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10656661 CCGATCCGAT
10656671 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
*
10656697 CTTAGACT-GGAGATGAACTCTGTATG
1 CTTAGACTGGGA-ATGAACTCTATATG
10656723 C
1 C
10656724 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:10657739 original size:26 final size:26
Alignment explanation
Indices: 10657710--10657762 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10657700 CCGGTTTGAT
*
10657710 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
10657736 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10657762 C
1 C
10657763 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10657935 original size:26 final size:26
Alignment explanation
Indices: 10657906--10657958 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10657896 CCGGTCCAAT
10657906 CTTAAAC-TGGGAATGAACTCCATATG
1 CTTAAACAT-GGAATGAACTCCATATG
* *
10657932 CTTAGACATGGAATGAACTCCGTATG
1 CTTAAACATGGAATGAACTCCATATG
10657958 C
1 C
10657959 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAAACATGGAATGAACTCCATATG
Found at i:10658282 original size:159 final size:155
Alignment explanation
Indices: 10657931--10658428 Score: 382
Period size: 158 Copynumber: 3.2 Consensus size: 155
10657921 AACTCCATAT
*
10657931 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATG-AAACGTACGGGCGCTCAGTCG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAACCTACGGGCGCTCAGTCG
* * * * ** *
10657995 GCCGGAGAGGCAGAATGCGCAAGTCGAGGACCGACTCGGTCCCCCCTGCATGCTGTCAATCCTGC
66 ACCGAAGAGGCAGAATGCGCAAGCCGAGGACCGACTCGATCCCCCCTGCATGCTACCAATCCCGC
* * *
10658060 TGTCGCAACCCTCTGTCCGATCTGA
131 TGCCACAACCCTCGGTCCGATCTGA
* * * * * *
10658085 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCCTTCGGGTGGTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA--A-CCTACGGGCGCTCA
** * * * * **
10658149 GTCGATTGAAGAGGCATAATGCGCAAGCCGAGGATCGGCTCGATCCCCCTCTGTATGCTACCGGT
62 GTCGACCGAAGAGGCAGAATGCGCAAGCCGAGGACCGACTCGATCCCCC-CTGCATGCTACCAAT
* *
10658214 CCCGTTGCCACAACCCTCGGTCCGGT-TGA
126 CCCGCTGCCACAACCCTCGGTCCGATCTGA
* * *
10658243 GGCTTAGACATGGACTGAACTCCCTATGCCTAAGCCAACCCATG-AAACGAGTATGCGGGCGCTC
1 -GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAC--CTA--CGGGCGCTC
* * * * * * * * * * *
10658307 AG-CCAGCCAGAA-AGGTAGAATACGCAAGTCGAGGATCGGCCCGGTCTCCCCTGCATGCTATCG
61 AGTCGA-CC-GAAGAGGCAGAATGCGCAAGCCGAGGACCGACTCGATCCCCCCTGCATGCTACCA
* * * * * *
10658370 ATCCTGTTACTACAACCCTCGATCCGGT-TCGA
124 ATCCCGCTGCCACAACCCTCGGTCCGATCT-GA
*
10658402 TCTTAGAC-TGGGAATGAACTCCGTATG
1 GCTTAGACAT-GGAATGAACTCCGTATG
10658429 TTTAGACTAG
Statistics
Matches: 272, Mismatches: 56, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
153 1 0.00
154 39 0.14
155 3 0.01
156 1 0.00
157 3 0.01
158 113 0.42
159 108 0.40
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAACCTACGGGCGCTCAGTCG
ACCGAAGAGGCAGAATGCGCAAGCCGAGGACCGACTCGATCCCCCCTGCATGCTACCAATCCCGC
TGCCACAACCCTCGGTCCGATCTGA
Found at i:10658433 original size:26 final size:26
Alignment explanation
Indices: 10658404--10658454 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
10658394 CGGTTCGATC
10658404 TTAGACT-GGGAATGAACTCCGTATGT
1 TTAGACTAGGG-ATGAACTCCGTATGT
10658430 TTAGACTAGGGATGAACTCCGTATG
1 TTAGACTAGGGATGAACTCCGTATG
10658455 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGGATGAACTCCGTATGT
Found at i:10658926 original size:26 final size:26
Alignment explanation
Indices: 10658888--10658939 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10658878 GGCTCAAAAT
10658888 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10658914 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10658940 GCTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10659307 original size:158 final size:157
Alignment explanation
Indices: 10658917--10659326 Score: 410
Period size: 158 Copynumber: 2.6 Consensus size: 157
10658907 CCGTATGCTT
* * * **
10658917 AGACATGGAATGAACTCCGTATGGCTAAGCCAACCCACAAAACGAGCGTGCGGATGCTCAGCCGG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGCCGG
* * * * *
10658982 TCGGAGAGGCAGAATGTACAAGCCGAGGATCGATCGGTCCCCCCTACGTGCTGTCGATCCTACTA
66 TCGGAGAGGCAGAATGTGCAAGCCGAGGATCGACCGATCCCCCATACGTGCTGTCGATCCCACTA
* * * * *
10659047 CCGCAACCCTCGGTCTGTTCTGATCTT
131 CCACAACCCTCGGTCCGTGCTGAGCTC
* * * * * * * * *
10659074 AGAC-TGAGAATGAACTCTGTATGCCTAAGTCAACTCATGAAATGAGAGTGCGAGCACTGAACCG
1 AGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGCCG
* * * * ** *
10659138 GTCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCTATGTGTGCTGTCGATCCCGC
65 GTCGGAGAGGCAGAATGTGCAAGCCGAGGATCGA-CCGATCCCCCATACGTGCTGTCGATCCCAC
* * * *
10659203 TGCCACTACCTTCGGTCCG-GCTGGGGCTC
129 TACCACAACCCTCGGTCCGTGCT-GAGCTC
* * *
10659232 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGGTCAGTCGG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGCCGG
* * *
10659297 CCGGACAGGCAGAATTTGCAAGCCGAGGAT
66 TCGGAGAGGCAGAATGTGCAAGCCGAGGAT
10659327 TGGCTCAGTC
Statistics
Matches: 196, Mismatches: 53, Indels: 7
0.77 0.21 0.03
Matches are distributed among these distances:
156 2 0.01
157 79 0.40
158 113 0.58
159 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.29, T:0.19
Consensus pattern (157 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGCCGG
TCGGAGAGGCAGAATGTGCAAGCCGAGGATCGACCGATCCCCCATACGTGCTGTCGATCCCACTA
CCACAACCCTCGGTCCGTGCTGAGCTC
Found at i:10659437 original size:26 final size:26
Alignment explanation
Indices: 10659400--10659451 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10659390 CGGTCCGATG
*
10659400 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTACGTATGC
10659426 TTAGACAT-GGAATGAACTACGTATGC
1 TTAGAC-TGGGAATGAACTACGTATGC
10659452 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTACGTATGC
Found at i:10659929 original size:26 final size:26
Alignment explanation
Indices: 10659900--10659952 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10659890 CTAGTCCGAT
*
10659900 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
10659926 CTTAGACTGGGGATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10659952 C
1 C
10659953 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10660987 original size:26 final size:26
Alignment explanation
Indices: 10660936--10660988 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10660926 CCGGTTTGAT
* *
10660936 CTTATACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
10660962 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10660988 C
1 C
10660989 CTATGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10661670 original size:26 final size:26
Alignment explanation
Indices: 10661629--10661681 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10661619 CCAGTTCGAT
10661629 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10661655 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
10661681 C
1 C
10661682 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10662631 original size:26 final size:26
Alignment explanation
Indices: 10662602--10662653 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10662592 TGATCCGATG
10662602 TTAGAC-TGGGAATGAACT-CTGTATGC
1 TTAGACAT-GGAATGAACTAC-GTATGC
10662628 TTAGACATGGAATGAACTACGTATGC
1 TTAGACATGGAATGAACTACGTATGC
10662654 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTACGTATGC
Found at i:10663144 original size:26 final size:26
Alignment explanation
Indices: 10663103--10663155 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10663093 CTAGTTCGAT
10663103 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * * *
10663129 CTTAGACTGGGGATGAATTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
10663155 C
1 C
10663156 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:10664147 original size:159 final size:159
Alignment explanation
Indices: 10663825--10664327 Score: 408
Period size: 159 Copynumber: 3.2 Consensus size: 159
10663815 GGCTCAAAAT
* * * *
10663825 CTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCT-CTCAG
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG-GGTGCTCAG
* * * **
10663889 CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGGCCGATCCCCCCCAGCGTGCTGTTGATC
65 CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCCAGCGTGCTGCCGATC
* *
10663954 CTGCTACCGCAACCCTCAGTCCGATCCAAT
130 CTGCTACCACAACCCTCAGTCCGATCCAAG
* * * * * * *
10663984 CTTAGACTACGAATTAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGTTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * *
10664049 TGGTCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTA-CGTGCTGCCGAT-
66 CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CCAGCGTGCTGCCGATC
* * * * * *
10664112 CTCGTTTCCACAACCCTCAGTTCGGT-TAGGG
130 CT-GCTACCACAACCCTCAGTCCGATCCA-AG
* * *
10664143 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGTGTGCGGGTGCTTA
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGTGCTCA
** ** * *** * * * * *
10664206 ATCGACCGGAGAGGCAGAATGTAAAAGCTGGGGATCAGCCCGATCCCCCCTA-CGTTCTGTCGAT
64 GCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCCAGCGTGCTGCCGAT
* * * * * * *** *
10664270 CCTACTGCCGCAACCCTCGGTCTGGTTGGAT
129 CCTGCTACCACAACCCTCAGTCCGATCCAAG
*
10664301 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
10664328 TTAGGCTGGG
Statistics
Matches: 270, Mismatches: 65, Indels: 19
0.76 0.18 0.05
Matches are distributed among these distances:
158 60 0.22
159 208 0.77
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCCAGCGTGCTGCCGATCC
TGCTACCACAACCCTCAGTCCGATCCAAG
Found at i:10665695 original size:13 final size:13
Alignment explanation
Indices: 10665677--10665703 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
10665667 CGGGCGTTCA
10665677 GCCGACCGGAGAG
1 GCCGACCGGAGAG
10665690 GCCGACCGGAGAG
1 GCCGACCGGAGAG
10665703 G
1 G
10665704 TATAATGCGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.30, G:0.48, T:0.00
Consensus pattern (13 bp):
GCCGACCGGAGAG
Found at i:10673480 original size:159 final size:158
Alignment explanation
Indices: 10673089--10673483 Score: 383
Period size: 159 Copynumber: 2.5 Consensus size: 158
10673079 AACTCCTTAT
* *
10673089 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * *
10673154 CCGGTCAG-AGAGATAGAATGCGCAAGCCGGGAATCGGCTCCGGTCCCCCTACGAGCTGTCGATC
66 -CGGACCGAAGAGACAGAATGCGCAAGCCGGGAATCGGCTCCGATCCCCCTACGAGCTATCGATC
* **
10673218 TTGCTACCGTAACCCTCGGTTCGGTCCTGA
130 TCGCTACCACAACCCTCGGTTCGG-CCTGA
* * * * * * *
10673248 TCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTACAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* * * *
10673312 GC-CAGCCGAAGAGACATAATGTGCAAGCCAGGG-ATCGGCT-CGATCCCCAT-CTGCATGCTAT
65 GCGGA-CCGAAGAGACAGAATGCGCAAGCC-GGGAATCGGCTCCGATCCCCCTAC-G-A-GCTAT
* * * *
10673373 CGGTCTCGGTGCCACAACCCTCGG-TCTGG-CTGGG
125 CGATCTCGCTACCACAACCCTCGGTTC-GGCCT-GA
* * * *
10673407 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
10673472 CGGACCGAAGAG
66 CGGACCGAAGAG
10673484 GTAGAATACG
Statistics
Matches: 188, Mismatches: 37, Indels: 22
0.76 0.15 0.09
Matches are distributed among these distances:
157 1 0.01
158 15 0.08
159 143 0.76
160 29 0.15
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CGGACCGAAGAGACAGAATGCGCAAGCCGGGAATCGGCTCCGATCCCCCTACGAGCTATCGATCT
CGCTACCACAACCCTCGGTTCGGCCTGA
Found at i:10676015 original size:26 final size:26
Alignment explanation
Indices: 10675979--10676031 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10675969 CTGATCCAAT
10675979 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
10676005 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10676031 C
1 C
10676032 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10676116 original size:355 final size:356
Alignment explanation
Indices: 10675378--10676373 Score: 1122
Period size: 355 Copynumber: 2.8 Consensus size: 356
10675368 AGCTGGCCGA
* * * * * * * * *
10675378 AGAGGCATAATGCGCAATCCAGGGTTCGGCCTGATCCCCCGCTGCGTGCTGTCGATCCCGCTGCC
1 AGAGGCATAATGCGCAACCCGGGGATCAGCCTGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTACC
* ** * * *
10675443 ATAACCCTCGGTTTGACTGGGGCTTAGACATGGAATGAACTCCCTATGTG-TAAGCCAACGCACG
66 ACAACCCTCGGTCCGACTGGGGCTTAGAGATGGAATGAACTCCGTATG-GCTAAGCCAACCCACG
* * * * *
10675507 AAAGGGGCGTACGGGTGCTCAGTCGACCCGAGAGGTAGAATGCGCAAG-CCAGGGATCGGCTCGG
130 AAACGAGCGTGCGGGTGCTCAGTCGACCAGAGAGGTAGAATGCGCAAGTCGA-GGATCGGCTCGG
* * * * * * *
10675571 TCCCCCCCTACGTACAACCGATCCTACTATCACAACCCTCGAACCGATTCGATCTTAGACTGGGA
194 T-CCCCCCTACATGCTACCGATCCTACTGTCACAACCCTCGATCCGATCCAATCTTAGACTGGGA
* * *
10675636 ATGAACTCCATATGCTTAGATTGGGGATGAACTCCGTGTGCCTAAGTCAACCCACGAAACGAGCG
258 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * *
10675701 TGCGGGAGCTCAATCGACCGGAGAGGTCGATCGG
323 TGCAGGAGCTCAATCGACCGAAGAGGCCGATCGG
* * * * *
10675735 AGAGGCATAATACGGAAGCTGGGGATCAGCCTGGTCCTCCTCTGCGTGCTGTCGGTCCTGCTACC
1 AGAGGCATAATGCGCAACCCGGGGATCAGCCTGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTACC
*
10675800 ACAACCCTCGGTCCGACTGGGGCTTAGAGATGGAATGAACTCCGTATGGCTAAGCCAACCCATGA
66 ACAACCCTCGGTCCGACTGGGGCTTAGAGATGGAATGAACTCCGTATGGCTAAGCCAACCCACGA
*
10675865 AACGAGCGTGCGGGTGCTCAGTCAACCAGAGAGGTAGAATGCGCAAGTCGAGGATCGGCTCGGT-
131 AACGAGCGTGCGGGTGCTCAGTCGACCAGAGAGGTAGAATGCGCAAGTCGAGGATCGGCTCGGTC
** * ** * * *
10675929 CTGCCTGCATGCTACCGATCCTACTGTCGTAACCCTTGGTCTGATCCAATCTTAGACTGGGAATG
196 CCCCCTACATGCTACCGATCCTACTGTCACAACCCTCGATCCGATCCAATCTTAGACTGGGAATG
*
10675994 AACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
261 AACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* *
10676059 AGGAGCTCAGTCGGCCGAAGAGGCCGGA-CGG
326 AGGAGCTCAATCGACCGAAGAGGCC-GATCGG
* * * *
10676090 AGAGGCATAATGCGTAACCCGGGGATCAG-CTCAGTCCCCCTTTACGTGCTGCCGATCCCGCTGC
1 AGAGGCATAATGCGCAACCCGGGGATCAGCCT-GGTCCCCCTCTGCGTGCT---G-T--CG--G-
* * ** * * *
10676154 CAATCCTGCTATCACAACCCTCGATCCGGTTGGGGCTTAG-GCACGGAATGAACTCTGTATGCCT
56 ---TCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGAG-ATGGAATGAACTCCGTATGGCT
* * * * ** *
10676218 AAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGTACAAGTCGG
117 AAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGACCAGAGAGGTAGAATGCGCAAGTCGA
** * * *
10676283 GGATCGATTCGGTCCCCCCTACATGCTATCGATCTTGCTGTCACAACCCTCGATCCGATCCAATC
182 GGATCGGCTCGGTCCCCCCTACATGCTACCGATCCTACTGTCACAACCCTCGATCCGATCCAATC
10676348 TTAGACTGGGAATGAACTCCGTATGC
247 TTAGACTGGGAATGAACTCCGTATGC
10676374 CTAAGTTAAC
Statistics
Matches: 534, Mismatches: 87, Indels: 25
0.83 0.13 0.04
Matches are distributed among these distances:
354 2 0.00
355 173 0.32
356 3 0.01
357 163 0.31
358 3 0.01
359 1 0.00
361 2 0.00
363 1 0.00
366 1 0.00
367 119 0.22
368 66 0.12
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (356 bp):
AGAGGCATAATGCGCAACCCGGGGATCAGCCTGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTACC
ACAACCCTCGGTCCGACTGGGGCTTAGAGATGGAATGAACTCCGTATGGCTAAGCCAACCCACGA
AACGAGCGTGCGGGTGCTCAGTCGACCAGAGAGGTAGAATGCGCAAGTCGAGGATCGGCTCGGTC
CCCCCTACATGCTACCGATCCTACTGTCACAACCCTCGATCCGATCCAATCTTAGACTGGGAATG
AACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
AGGAGCTCAATCGACCGAAGAGGCCGATCGG
Found at i:10676453 original size:158 final size:157
Alignment explanation
Indices: 10676198--10676689 Score: 467
Period size: 159 Copynumber: 3.1 Consensus size: 157
10676188 GCTTAGGCAC
* *
10676198 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-TCGGCCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCT-GGTCGGA
* * ** *
10676262 GAGGCAGAATGTACAAGTCGGGGATCGATTCGGTCCCCCCTACATGCTATCGATCTTGCTGTCAC
65 GAGGCAGAATGTGCAAGCCGGGGATCGGCTCGGTCCCCCCTACGTGCTATCGATCTTGCTGTCAC
*
10676327 AACCCTCGATCCGATCCAATCTTAGACT
130 AACCCTCGATCCGATCCGATCTTAGACT
** * * * *
10676355 GGGAATGAACTCCGTATGCCTAAGTTAACCTACGAAATGAGCGTGCGGGCGCTGAGCTGATCGGA
1 -GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGTCGGA
* * * * *** *
10676420 GAGGCATAATGTGCAAGCCGGGGATCGGCTCGGTCCCCTACTATGTGCTGTC-ACTCCCACTGCC
65 GAGGCAGAATGTGCAAGCCGGGGATCGGCTCGGTCCCC-CCTACGTGCTATCGA-TCTTGCTGTC
* * * **
10676484 ACAACCTTCGATCCG-GCTGGGGCTTAGACAT
128 ACAACCCTCGATCCGATC-CGATCTTAGAC-T
* * * * *
10676515 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGCCGGTCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGTCGGAG
* * * * * * *
10676580 AGGTAGAATGCGCAAGCCAGGAATCGGCCCGAT-CCCCCTACGTGCTACCGATCCTAATGCTGT-
66 AGGCAGAATGTGCAAGCCGGGGATCGGCTCGGTCCCCCCTACGTGCTATCGAT-CT--TGCTGTC
* *
10676643 --AACCCTCGGTCCGATCTGATCTTAGACT
128 ACAACCCTCGATCCGATCCGATCTTAGACT
*
10676671 AGGAATGAACTTCGTATGC
1 -GGAATGAACTCCGTATGC
10676690 TTAGACTAGG
Statistics
Matches: 262, Mismatches: 61, Indels: 23
0.76 0.18 0.07
Matches are distributed among these distances:
156 1 0.00
157 45 0.17
158 95 0.36
159 117 0.45
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGTCGGAG
AGGCAGAATGTGCAAGCCGGGGATCGGCTCGGTCCCCCCTACGTGCTATCGATCTTGCTGTCACA
ACCCTCGATCCGATCCGATCTTAGACT
Found at i:10676549 original size:159 final size:158
Alignment explanation
Indices: 10676166--10676633 Score: 469
Period size: 159 Copynumber: 3.0 Consensus size: 158
10676156 ATCCTGCTAT
* * * *
10676166 CACAACCCTCGATCCGGTTGGGGCTTAGGCACGGAATGAACTCTGTATGCCTAAGCCAACCCACG
1 CACAACCCTCGATCCGGATGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * **
10676231 AAACGAGCGTGCGGGCGCTCAG-TCGGCCGGAGAGGCAGAATGTACAAGTCGGGGATCGATTCGG
66 AAACGAGCGTGCGGGCGCTCAGCT-GGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCTCGG
* *** *
10676295 TCCCCCCTACATGCTATCGATCTTGCTGT
130 TCCCCACTACATGCTATCGATCCCACTGC
**** ** *
10676324 CACAACCCTCGATCC-GATCCAATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTTAACCTA
1 CACAACCCTCGATCCGGAT-GGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * *
10676387 CGAAATGAGCGTGCGGGCGCTGAGCTGATCGGAGAGGCATAATGTGCAAGCCGGGGATCGGCTCG
64 CGAAACGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCTCG
** *
10676452 GTCCCCTACTATGTGCTGTC-ACTCCCACTGC
129 GTCCCC-ACTACATGCTATCGA-TCCCACTGC
* * *
10676483 CACAACCTTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
1 CACAACCCTCGATCCGGATGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * * * * * * * *
10676548 AAACGGGCGTGCGGGTGCTCAGCCGGTCGAAGAGGTAGAATGCGCAAGCCAGGAATCGGCCCGAT
66 AAACGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCTCGGT
* *
10676613 CCCC-CTACGTGCTACCGATCC
131 CCCCACTACATGCTATCGATCC
10676634 TAATGCTGTA
Statistics
Matches: 247, Mismatches: 55, Indels: 17
0.77 0.17 0.05
Matches are distributed among these distances:
157 14 0.06
158 110 0.45
159 120 0.49
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CACAACCCTCGATCCGGATGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
AAACGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCTCGGT
CCCCACTACATGCTATCGATCCCACTGC
Found at i:10676714 original size:26 final size:26
Alignment explanation
Indices: 10676663--10676715 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10676653 CCGATCTGAT
* *
10676663 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
10676689 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
10676715 C
1 C
10676716 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:10677071 original size:25 final size:26
Alignment explanation
Indices: 10677043--10677094 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10677033 CCGGTCTGAT
10677043 CTTAGAC-TGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
10677068 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10677094 C
1 C
10677095 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10677572 original size:26 final size:26
Alignment explanation
Indices: 10677543--10677595 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10677533 CTGATCCGAT
*
10677543 CTTAGACTG-GGAATGAACTCTGTATG
1 CTTAGACTGAGG-ATAAACTCTGTATG
10677569 CTTAGACTGAGGATAAACTCTGTATG
1 CTTAGACTGAGGATAAACTCTGTATG
10677595 C
1 C
10677596 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGGATAAACTCTGTATG
Found at i:10678316 original size:26 final size:26
Alignment explanation
Indices: 10678264--10678316 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
10678254 AGCTCAAAAT
* *
10678264 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATAAACTCCGCATG
*
10678290 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGCATG
10678316 C
1 C
10678317 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGCATG
Found at i:10680580 original size:26 final size:26
Alignment explanation
Indices: 10680529--10680581 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10680519 CCAGCCTGAT
* *
10680529 CTTATACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACATATG
* *
10680555 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTACATATG
10680581 C
1 C
10680582 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:10681299 original size:26 final size:26
Alignment explanation
Indices: 10681248--10681300 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
10681238 GGCTCAAAAT
* *
10681248 CTTAGACTAGGAGTGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
10681274 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
10681300 C
1 C
10681301 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:10681609 original size:26 final size:26
Alignment explanation
Indices: 10681565--10681617 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10681555 CTGGTCTGAT
10681565 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
* *
10681591 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATCAACTCCGTATG
10681617 C
1 C
10681618 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:10681979 original size:26 final size:26
Alignment explanation
Indices: 10681941--10681993 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10681931 CTGGTCCGAT
10681941 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10681967 CTTAGACAT-GGAATGAAGTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
10681993 C
1 C
10681994 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10682494 original size:26 final size:26
Alignment explanation
Indices: 10682445--10682494 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
10682435 ATCTGATCTT
*
10682445 AGACTGGGAATGAACTCTGCATGCTC
1 AGACTGGGAATGAACTCCGCATGCTC
* *
10682471 AGACTGGGGATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGCATGC
10682495 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGCATGCTC
Found at i:10683140 original size:26 final size:26
Alignment explanation
Indices: 10683111--10683163 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10683101 CCAGTCCGAT
10683111 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10683137 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10683163 C
1 C
10683164 CTAAGTCATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10683519 original size:26 final size:26
Alignment explanation
Indices: 10683490--10683542 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10683480 CTGGTCCGAT
*
10683490 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
10683516 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
10683542 C
1 C
10683543 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:10684010 original size:26 final size:26
Alignment explanation
Indices: 10683981--10684033 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10683971 CCGATCCAAT
10683981 CTTAGACCAGGAATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCGTATG
** *
10684007 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCGTATG
10684033 C
1 C
10684034 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCCGTATG
Found at i:10684632 original size:26 final size:26
Alignment explanation
Indices: 10684596--10684648 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10684586 CCGGTCCGAT
*
10684596 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
10684622 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
10684648 C
1 C
10684649 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:10685062 original size:159 final size:159
Alignment explanation
Indices: 10684766--10685065 Score: 352
Period size: 159 Copynumber: 1.9 Consensus size: 159
10684756 ACCAGTCCTA
* * * *
10684766 CTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAGCC
1 CTGCCACAACCCTCGGTCCGACTGGGGCTTAGACAGGGAATAAACTCCGTATGCCTAAGCCAACC
* * * * * * * *
10684831 CATGGAACGAGCGTGCGGGCTCTCAACCGGTCGGAAAGGCATAATGCACAAGCCAGGGATCGGCC
66 CACGAAACGAGCGTGCGAGCGCTCAACCAGCCGGAAAGGCAGAATGCACAAGACAGGGATCGGCC
*
10684896 TAGTCCCCCTTTGCGTGCTATCGGTCCCG
131 GAGTCCCCCTTTGCGTGCTATCGGTCCCG
* * * *
10684925 CTGCCACAACCTTCGGTCCGGCTGGGGCTTAGGCAGGGACTAAACTGCC-TATGCCTAAGCCAAC
1 CTGCCACAACCCTCGGTCCGACTGGGGCTTAGACAGGGAATAAACT-CCGTATGCCTAAGCCAAC
* ** * ** *
10684989 CCACGAAACGGGCGTGCGAGCGCTCAGTCAGCCGGAGAGGCAGAATGTGCAAGACGGGGATCGGC
65 CCACGAAACGAGCGTGCGAGCGCTCAACCAGCCGGAAAGGCAGAATGCACAAGACAGGGATCGG-
10685054 CCGA-TCCCCCTT
129 CCGAGTCCCCCTT
10685066 GAGTGCTGTC
Statistics
Matches: 115, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
159 110 0.96
160 5 0.04
ACGTcount: A:0.22, C:0.32, G:0.30, T:0.17
Consensus pattern (159 bp):
CTGCCACAACCCTCGGTCCGACTGGGGCTTAGACAGGGAATAAACTCCGTATGCCTAAGCCAACC
CACGAAACGAGCGTGCGAGCGCTCAACCAGCCGGAAAGGCAGAATGCACAAGACAGGGATCGGCC
GAGTCCCCCTTTGCGTGCTATCGGTCCCG
Found at i:10685139 original size:26 final size:26
Alignment explanation
Indices: 10685110--10685162 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10685100 CCGGTCTGAT
*
10685110 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
* *
10685136 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
10685162 C
1 C
10685163 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:10685348 original size:26 final size:26
Alignment explanation
Indices: 10685319--10685371 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10685309 CCAGTCTGAT
*
10685319 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
10685345 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10685371 C
1 C
10685372 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10685708 original size:694 final size:695
Alignment explanation
Indices: 10684357--10685816 Score: 1649
Period size: 694 Copynumber: 2.1 Consensus size: 695
10684347 ACTGAACTGC
* * * *
10684357 GTGCTGTCGATCCTACTATCGCAACCTTCGAT-CGAATCTGATCTTAGACTAGAAAAGAACTCCG
1 GTGCTGTCGATCCTACTACCGCAACCTTCGATCCG-GTCTGATCTTAGACTGGGAAAGAACTCCG
*
10684421 TATGCTTAGACTGGGGATGAACTCATATGCCTAAGTCAACCTATGAAACGAGCGTGCGGGTGCTC
65 TATGCTTAGACTGGGGATGAACTCATATGCCTAAGTCAACCTATGAAACGAGCGTGCGGGCGCTC
** * *
10684486 AGCCGACCGAAGAGGCCATCCGGAGAGGCAGAATGCGCAAGCTAGGGGATCGACTCAGTCCCCCC
130 AGCCGACCGAAGAGGCCATCCAAAAAGGCAGAATGCGCAAGCTAGGGGATCGACTCAGTCCCACC
* * * * *
10684551 TGTGTGCTATCGATCCTACTACTGCAACTCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTT
195 TGCGTGCTACCGATCCTACTACTGCAACCCTCGATCCAGTCCGATCTTAGACTAGGAATGAACTT
* * * * *
10684616 CGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAAGCCATAAAATGAGCGTGCGGGAG
260 CGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAGCCACAAAACGAGCGTACGGGAG
* * * * * * * *
10684681 CTCAGTCGGCCAGAGAGGCATAATGCATAAGTCGGGGATCAGCCTGGTCACCCTCTGCGTGCTGC
325 CTCAATCGGCCAGAGAGGCAGAATACACAAGTCGGGGATCAACCCGATCACCCCCT-CGTGCTGC
* *
10684746 TGATCCCGCTACCAGTCCTACTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAAC
389 TGAT-CCG----CAGTCCTACTGCCACAACCATCGGTCCGATTGGAGCTTAGACATGGAATGAAC
* * * *
10684811 TCCGTATGCCTAAGCCAGCCCATGGAACGAGCGTGCGGGCTCTCAACCGGTCGGAAAGGCATAAT
449 TCCGTATGCATAAGCCAACCCATGGAACAAGAGTGC-GG----C-A-C---CGGAAAGGCATAAT
* *
10684876 GCACAAGCCAGGGATCGGCCTAGTCCCCCTTTGCGTGCTATCGGTCCCGCTGCCACAACCTTCGG
504 GCACAAGCCAGGGATCGGCCTAGTCCCCCTTTACGTGCTATCGGTCCCGCTGCCACAACCTTCGA
* * * *
10684941 TCCGGCTGGGGCTTAGGCAGGGACTAAACTGCCTATGCCTAAGCCAACCCACGAAACGGGCGTGC
569 TCCGGCTGGGGCTTAGACAGGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGC
* * ** *
10685006 GAGCGCTCAGTCAG-CCGGAGAGGCAGAATGTGCAAGACGGGGATCGGCCCGATCCCCCTTGA
634 GAGCGCTCAG-CAGACCGAAGAGGCAGAATGCGCAAGACGGGGATCAACCCGATCCCCCCTGA
* *
10685068 GTGCTGTCGATCCTGCTACCGTAACCTTCGATCCGGTCTGATCTTAGACTGGGAAAGAACTCCGT
1 GTGCTGTCGATCCTACTACCGCAACCTTCGATCCGGTCTGATCTTAGACTGGGAAAGAACTCCGT
10685133 ATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCTATGAAACGAGCGTGCGGGCGCTC
66 ATGCTTAGACTGGGGATGAACT-CATATGCCTAAGTCAACCTATGAAACGAGCGTGCGGGCGCTC
** * *
10685198 AGTTGACC-AGAGAGGCCATCTAAAAAGGCAGAATGCGCAAGCT-GGGGATCGACTCGGTCCCAC
130 AGCCGACCGA-AGAGGCCATCCAAAAAGGCAGAATGCGCAAGCTAGGGGATCGACTCAGTCCCAC
*
10685261 CTGCGTGCTACCGATCTTGCTACTGGTCTTGCTACTGCAACCCTCGATCCAGTCTGATCTTAGAC
194 CTGCGTGCTACCGATC---CTA---------CTACTGCAACCCTCGATCCAGTCCGATCTTAGAC
* *
10685326 TGGGAATGAAC-TCTGTATGCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAA-CACACGA
247 TAGGAATGAACTTC-GTATGCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAAGC-CACAA
* *
10685388 AACGAGCGTACGGGCGCTCAATCGGCCAGAGAGGCAGAATACGCAAGTCGGGGATCAACCCGATC
309 AACGAGCGTACGGGAGCTCAATCGGCCAGAGAGGCAGAATACACAAGTCGGGGATCAACCCGATC
* * *
10685453 -CCCCCT-GTG-TGCTG-T-CG-A-TCCTACTGTCGCAACCATCGGTCCGATCT-GATCTTCA-A
374 ACCCCCTCGTGCTGCTGATCCGCAGTCCTACTGCCACAACCATCGGTCCGAT-TGGAGCTT-AGA
* * *
10685509 -TTGAGAATGAACTTCGTATGCATAAGTCAACCCA-GGAA-AAGAGT-C-G-A-C-GAAGAGGCA
437 CATG-GAATGAACTCCGTATGCATAAGCCAACCCATGGAACAAGAGTGCGGCACCGGAA-AGGCA
* * * * * *
10685566 TAATGCGCAAGTC-GAGGATCGGTCTGGTCCTCCTTTACGTGCTATCGGTCTCGCTGCCACAACC
500 TAATGCACAAGCCAG-GGATCGGCCTAGTCCCCCTTTACGTGCTATCGGTCCCGCTGCCACAACC
* * *
10685630 TTCGATCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGG
564 TTCGATCCGGCTGGGGCTTAGACAGGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGGG
* * * * * *
10685695 CATGCGGGCGCTCAGCCGACTGAAGAGGCAGAATGCGTAAGTCGGGGATCAACCCGGTCCCCCCT
629 CATGCGAGCGCTCAGCAGACCGAAGAGGCAGAATGCGCAAGACGGGGATCAACCCGATCCCCCCT
*
10685760 GC
694 GA
* * *
10685762 GTGCTGTCGATCCTACTACCGCAACCCTCGATCTGGT-TCAATCTTAGACTGGGAA
1 GTGCTGTCGATCCTACTACCGCAACCTTCGATCCGGTCT-GATCTTAGACTGGGAA
10685817 TAAACTTTGT
Statistics
Matches: 642, Mismatches: 82, Indels: 67
0.81 0.10 0.08
Matches are distributed among these distances:
693 7 0.01
694 218 0.34
699 1 0.00
705 1 0.00
707 1 0.00
708 4 0.01
709 6 0.01
710 55 0.09
711 114 0.18
712 78 0.12
714 3 0.00
716 2 0.00
718 1 0.00
719 5 0.01
720 3 0.00
722 9 0.01
723 134 0.21
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (695 bp):
GTGCTGTCGATCCTACTACCGCAACCTTCGATCCGGTCTGATCTTAGACTGGGAAAGAACTCCGT
ATGCTTAGACTGGGGATGAACTCATATGCCTAAGTCAACCTATGAAACGAGCGTGCGGGCGCTCA
GCCGACCGAAGAGGCCATCCAAAAAGGCAGAATGCGCAAGCTAGGGGATCGACTCAGTCCCACCT
GCGTGCTACCGATCCTACTACTGCAACCCTCGATCCAGTCCGATCTTAGACTAGGAATGAACTTC
GTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAGCCACAAAACGAGCGTACGGGAGC
TCAATCGGCCAGAGAGGCAGAATACACAAGTCGGGGATCAACCCGATCACCCCCTCGTGCTGCTG
ATCCGCAGTCCTACTGCCACAACCATCGGTCCGATTGGAGCTTAGACATGGAATGAACTCCGTAT
GCATAAGCCAACCCATGGAACAAGAGTGCGGCACCGGAAAGGCATAATGCACAAGCCAGGGATCG
GCCTAGTCCCCCTTTACGTGCTATCGGTCCCGCTGCCACAACCTTCGATCCGGCTGGGGCTTAGA
CAGGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGAGCGCTCAGCAGACCG
AAGAGGCAGAATGCGCAAGACGGGGATCAACCCGATCCCCCCTGA
Found at i:10686068 original size:298 final size:300
Alignment explanation
Indices: 10685344--10686150 Score: 1016
Period size: 301 Copynumber: 2.7 Consensus size: 300
10685334 AACTCTGTAT
* * * *
10685344 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAG
* * *
10685409 TCGGCC-AGAGAGGCAGAATACGCAAGTCGGGGATCAACCCGATCCCCCCTGTGTGCTGTCGATC
66 TCGACCGA-AGAGGCAGAATGCGCAAGTCGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATC
* * * * *
10685473 CTACTGTCGCAACCATCGGTC-CGATCTGATCTTCA-ATTGAGAATGAACTTCGTATGCATAAGT
130 CTACTGTCGCAACCATCGGTCTGGTTC-AATCTT-AGACTGGGAATGAACTTCGTATGCATAAGT
* * * * *
10685536 CAACCCAGGAAAAGAGTCGACGAAGAGGCATAATGCGCAAGTCGAGGATCGGTCTGGTCCTCCTT
193 CAACCCATGAAACGAGTCGAC-AAGAAGCATAATACGCAAGTCGAGGATCGATCTGGTCCTCCTT
* * * * **
10685601 TACGTGCTATCGGTCTCGCTGCCACAACCTTCGATCCGGTTGGG
257 TACGTGCTACCAGTCTCGCTACCACAACCCTCGATCCGACTGGG
* *
10685645 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAG
* * * *
10685710 CCGACTGAAGAGGCAGAATGCGTAAGTCGGGGATCAACCCGGTCCCCCCTGCGTGCTGTCGATCC
66 TCGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCC
** * * * *
10685775 TACTACCGCAACCCTCGATCTGGTTCAATCTTAGACTGGGAATAAACTTTGTATGCATAAGTCAA
131 TACTGTCGCAACCATCGGTCTGGTTCAATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAA
*
10685840 CCCATGAAACGAGTCGA-AA-AAGCATAATACGCAAGTCGAGGATCGATCTGGTCC-CCTTCTGC
196 CCCATGAAACGAGTCGACAAGAAGCATAATACGCAAGTCGAGGATCGATCTGGTCCTCCTT-TAC
10685902 GTGCTACCAGTCTCGCTACCACAACCCTCG-TCCGACTGGG
260 GTGCTACCAGTCTCGCTACCACAACCCTCGATCCGACTGGG
* * *
10685942 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAG
* * * * * ** * * *
10686007 TCGACCGAAAAAGCATAATGCGCAAGTCGGGGATCGACCCAGTTTGCCTCAGCATGCTGTCGATC
66 TCGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCAACCC-GATCCCCCCTGCGTGCTGTCGATC
* * * * **
10686072 CTACTGTCGCAACCTTCGGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTACACATAAGTCA
130 CTACTGTCGCAACCATCGGTCTGGTTCAATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCA
10686137 ACCCATGAAACGAG
195 ACCCATGAAACGAG
10686151 CGTGTGGGCA
Statistics
Matches: 436, Mismatches: 65, Indels: 13
0.85 0.13 0.03
Matches are distributed among these distances:
297 105 0.24
298 146 0.33
299 2 0.00
300 1 0.00
301 178 0.41
302 4 0.01
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.21
Consensus pattern (300 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAG
TCGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCC
TACTGTCGCAACCATCGGTCTGGTTCAATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAA
CCCATGAAACGAGTCGACAAGAAGCATAATACGCAAGTCGAGGATCGATCTGGTCCTCCTTTACG
TGCTACCAGTCTCGCTACCACAACCCTCGATCCGACTGGG
Found at i:10686289 original size:26 final size:26
Alignment explanation
Indices: 10686260--10686312 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10686250 CTGATCCGAT
*
10686260 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAAACTAGGAATGAACTCTGTATG
* * *
10686286 CTTAAACTAGGGATGAATTTTGTATG
1 CTTAAACTAGGAATGAACTCTGTATG
10686312 C
1 C
10686313 ATACGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.34
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCTGTATG
Found at i:10687118 original size:26 final size:26
Alignment explanation
Indices: 10687077--10687129 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10687067 CCGGTCTGAT
10687077 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
10687103 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
10687129 C
1 C
10687130 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10687824 original size:26 final size:26
Alignment explanation
Indices: 10687786--10687838 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10687776 GGCTGAAAAT
10687786 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10687812 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
10687838 C
1 C
10687839 CTAGGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10689669 original size:26 final size:26
Alignment explanation
Indices: 10689640--10689692 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10689630 CCGATCTGAT
10689640 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10689666 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10689692 C
1 C
10689693 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:10690247 original size:26 final size:26
Alignment explanation
Indices: 10690210--10690261 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10690200 GCTCAAAATG
10690210 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
10690236 TTAGACAT-GGAATGACCTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
10690262 CTAAGCCAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:10691123 original size:26 final size:26
Alignment explanation
Indices: 10691085--10691137 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10691075 TCGGTTTGAT
10691085 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
10691111 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
10691137 C
1 C
10691138 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:10691430 original size:157 final size:156
Alignment explanation
Indices: 10691269--10691706 Score: 447
Period size: 158 Copynumber: 2.8 Consensus size: 156
10691259 CCGGTCCGAT
*
10691269 CTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCATGAAACGAGCGTGCAGGCACTGAGCC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCATGAAACGAGCGTGCAGGCACTGAGCC
10691334 GACCGGAGAGGCATAAT-CGCAAGCTGGGGATCAGCCCGGTGCCCCTCTGCGTGCTGTCGATCCC
66 GACCGGAGAGGCATAATACGCAAGCTGGGGATC-GCCCGGT-CCCCTCTGCGTGCTGTCGATCCC
***
10691398 ACTGCCACAACCCTCGGTCTGG-CTGGGG
129 ACTGCCACAACCCTCGGTCTGGTC-CAAG
* * * *
10691426 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGC-GAGCACTCA
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGTCAA-CCATGAAACGAGCGTGCAG-GCACTGA
* * * * * * * * *
10691489 GCCGACTGAAGAGGCAGAATGCGCAAGCTGGGAATTGGCCCGATCTCCTCTGCGTGCTATCGATC
63 GCCGACCGGAGAGGCATAATACGCAAGCTGGGGA-TCGCCCGGTCCCCTCTGCGTGCTGTCGATC
* * * *
10691554 CTACTGTCAGAACCCTCGGTCTGGTCCAAT
127 CCACTGCCACAACCCTCGGTCTGGTCCAAG
* * * * *
10691584 TTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTATGAAACAAGTGTG-AGGGCGCTGAG
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACC-ATGAAACGAGCGTGCA-GGCACTGAG
* ** * *
10691648 CTGGTCGGAGAGGCATAATACGCAAG-TCGGTGATCGACCCGGTCCCCCTCTGCATGCTG
64 CCGACCGGAGAGGCATAATACGCAAGCT-GGGGATCG-CCCGGT-CCCCTCTGCGTGCTG
10691707 CCGGTCCCGC
Statistics
Matches: 225, Mismatches: 43, Indels: 24
0.77 0.15 0.08
Matches are distributed among these distances:
156 1 0.00
157 37 0.16
158 154 0.68
159 32 0.14
160 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (156 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCATGAAACGAGCGTGCAGGCACTGAGCC
GACCGGAGAGGCATAATACGCAAGCTGGGGATCGCCCGGTCCCCTCTGCGTGCTGTCGATCCCAC
TGCCACAACCCTCGGTCTGGTCCAAG
Found at i:10691822 original size:317 final size:315
Alignment explanation
Indices: 10691261--10691833 Score: 733
Period size: 317 Copynumber: 1.8 Consensus size: 315
10691251 CCCTCACTCC
* * *
10691261 GGTCCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCATGAAACGAGCGTGCAGGC
1 GGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCATGAAACAAGCGTGCAGGC
* * *
10691326 ACTGAGCCGACCGGAGAGGCATAATCGCAAGCTGGGGATCAGCCCGGTGCCCCTCTGCGTGCTGT
66 ACTGAGCCGACCGGAGAGGCATAATCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGCATGCTGC
** * * * *
10691391 CGATCCCACTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
131 CGATCCCACTAACACAACCCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTACGCCGA
* * * *
10691456 AGCCAACCCATGAAACGGGCGTGCGAGCACTCAGCCGACTGAAGAGGCAGAATGCGCAAGCTGGG
196 AGCCAACCCACGAAACAGACATGCGAGCACTCAGCCGACTGAAGAGGCAGAATGCGCAAGCTGGG
10691521 AATTGGCCCGATCTCCTCTGCGTGCTATCGATCCTACTGTCAGAACCCTCGGTCT
261 AATTGGCCCGATCTCCTCTGCGTGCTATCGATCCTACTGTCAGAACCCTCGGTCT
* * *
10691576 GGTCCAATTTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTATGAAACAAGTGTG-AGG
1 GGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACC-ATGAAACAAGCGTGCA-G
* * ** *
10691640 GCGCTGAGCTGGTCGGAGAGGCATAATACGCAAG-TCGGTGATC-GACCCGGTCCCCCTCTGCAT
64 GCACTGAGCCGACCGGAGAGGCATAAT-CGCAAGCT-GGGGATCAG-CCCGGTCCCCCTCTGCAT
* * * ** *
10691703 GCTGCCGGTCCCGCTAAGACAACTGTCAGTC-GAATTGGGGCTTAGACATGGAATGAACTCCCTA
126 GCTGCCGATCCCACTAACACAACCCTCAGTCTG-ACTGGGGCTTAGACATGGAATGAACTCCCTA
* * * * *
10691767 CGCCGAAGCCAACCCACGAAACAGACATGCGGGTACTCAGCCTG-TTGGAGAGGCAGAATGCTCA
190 CGCCGAAGCCAACCCACGAAACAGACATGCGAGCACTCAGCC-GACTGAAGAGGCAGAATGCGCA
10691831 AGC
254 AGC
10691834 CGTGGATCAG
Statistics
Matches: 216, Mismatches: 35, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
315 43 0.20
316 39 0.18
317 133 0.62
318 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.19
Consensus pattern (315 bp):
GGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCATGAAACAAGCGTGCAGGC
ACTGAGCCGACCGGAGAGGCATAATCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGCATGCTGC
CGATCCCACTAACACAACCCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTACGCCGA
AGCCAACCCACGAAACAGACATGCGAGCACTCAGCCGACTGAAGAGGCAGAATGCGCAAGCTGGG
AATTGGCCCGATCTCCTCTGCGTGCTATCGATCCTACTGTCAGAACCCTCGGTCT
Found at i:10692273 original size:26 final size:26
Alignment explanation
Indices: 10692237--10692287 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
10692227 CCAGTCCGAT
*
10692237 CTTAGACTGGGAACGAACTCTGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
* *
10692263 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAACGAACTCCGTAT
10692288 ACCTAAGCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:10692623 original size:26 final size:26
Alignment explanation
Indices: 10692582--10692634 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10692572 CCGATCCGAT
10692582 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
10692608 CTTAGACTGAGG-ATGAACTCTGTATG
1 CTTAGACTG-GGAATGAACTCTGTATG
10692634 C
1 C
10692635 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:10692990 original size:26 final size:26
Alignment explanation
Indices: 10692961--10693012 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10692951 TCCGGTCCGA
10692961 TCTTAGAC-TGGGAATGAACTCCGTAT
1 TCTTAGACAT-GGAATGAACTCCGTAT
*
10692987 TCTTAGACATGGAATGAACTCTGTAT
1 TCTTAGACATGGAATGAACTCCGTAT
10693013 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (26 bp):
TCTTAGACATGGAATGAACTCCGTAT
Found at i:10693554 original size:158 final size:156
Alignment explanation
Indices: 10692987--10693563 Score: 600
Period size: 158 Copynumber: 3.7 Consensus size: 156
10692977 AACTCCGTAT
* * *
10692987 TCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAA
1 TCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
10693052 CCGACCGGAGAGGCAGAATGTGCAAGCTGAGGATCGGCCCGGTCCCCCCTGCGTACTGTCGATCC
66 CCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATC-GACCGGTCCCCCTTGCGTGCTGTCGATCC
* * * * *
10693117 TACTACCGTAACCCTCGATCCGGTCCAA
130 TGCTGCCGCAACCCTCG-TCCGGTTCGA
* * * * * *
10693145 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAACGAGAGTACAGGCGATCA
1 TCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
10693209 GCTGATCGGAGAGGCATAATGCGCAAGCTGGGGATCGATCCGGTCCCCCTCTGCGTGCTGTCGGT
65 GCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCGGTCCCCCT-TGCGTGCTGTCGAT
* * * *
10693274 CCTGCTGCCACAACCCTCGGTCCGGCTGGG
128 CCTGCTGCCGCAACCCTC-GTCCGGTTCGA
* ** * * * *
10693304 GCTTAGACATTTAATGAACTCCCTATGCCTGAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 TCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
10693369 CCGGCTAGAGAGGCAGAATGCGTAAGCCGAGGATCGACCTGGTCTCCCTTACGTGCTGTCGATCC
66 CCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACC-GGTCCCCCTTGCGTGCTGTCGATCC
*
10693434 TGCTGCCGCAACCCTCAGTCCAGTTCGA
130 TGCTGCCGCAACCCTC-GTCCGGTTCGA
* *
10693462 TCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 TCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* ** * *
10693526 GTCGACCAGAGAGGCAGGTTGTGCAAGCCGGGGATCGA
65 GCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGA
10693564 ATGGGTGGTA
Statistics
Matches: 337, Mismatches: 75, Indels: 14
0.79 0.18 0.03
Matches are distributed among these distances:
157 3 0.01
158 215 0.64
159 117 0.35
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
TCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCGGTCCCCCTTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTCGTCCGGTTCGA
Found at i:10693563 original size:317 final size:317
Alignment explanation
Indices: 10692988--10693563 Score: 760
Period size: 317 Copynumber: 1.8 Consensus size: 317
10692978 ACTCCGTATT
** *
10692988 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAAC
* * * * *
10693053 CGACCGGAGAGGCAGAATGTGCAAGCTGAGGATCGGCCCGGTCCCCCCTGCGTACTGTCGATCCT
66 CGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACGTACTGTCGATCCT
* *
10693118 ACTACCGTAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
131 ACTACCGCAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * *
10693183 TCACGAAACGAGAGTACAGGCGATCAGCTGATCGGAGAGGCATAATGCGCAAGCTGGGGATCGAT
196 CCACGAAACGAGAGTACAGGCGATCAGCTGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGAT
10693248 CCGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGG
261 CCGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGG
** * ** *
10693305 CTTAGACATTTAATGAACTCCCTATGCCTGAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAAC
* * * * * * *
10693370 CGGCTAGAGAGGCAGAATGCGTAAGCCGAGGATCGACCTGGTCTCCCTTACGTGCTGTCGATCCT
66 CGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACGTACTGTCGATCCT
* * * * *
10693435 GCTGCCGCAACCCTC-AGTCCAGTTCGATCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
131 ACTACCGCAACCCTCGA-TCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * ** *
10693499 CCCACGAAACGAGCGTGCGGGCGCTCAG-TCGACCAGAGAGGCAGGTTGTGCAAGCCGGGGATCG
195 CCCACGAAACGAGAGTACAGGCGATCAGCT-GACCAGAGAGGCAGAATGCGCAAGCCGGGGATCG
10693563 A
259 A
10693564 ATGGGTGGTA
Statistics
Matches: 217, Mismatches: 40, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
316 2 0.01
317 215 0.99
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (317 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAAC
CGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACGTACTGTCGATCCT
ACTACCGCAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGAGTACAGGCGATCAGCTGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGAT
CCGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGG
Found at i:10694535 original size:26 final size:26
Alignment explanation
Indices: 10694506--10694558 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
10694496 CTGATTTGAT
10694506 CTTAGACT-GGGAATGAAC-TCTGTATG
1 CTTAGACTGGGGAA-GAACTTC-GTATG
*
10694532 CTTAGATTGGGGAAGAACTTCGTATG
1 CTTAGACTGGGGAAGAACTTCGTATG
10694558 C
1 C
10694559 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGAAGAACTTCGTATG
Found at i:10695108 original size:160 final size:156
Alignment explanation
Indices: 10694691--10695114 Score: 435
Period size: 158 Copynumber: 2.7 Consensus size: 156
10694681 GGTCCTACTG
* * *
10694691 CCACAACCCTCGGT-CAGCTGGGGCTTGGACATGGAATTAACTCCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * *
10694755 GAAATGAGCGTGCGGGTGCTCCGTCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGG
66 GAAATGAGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCAGAATGCACAAACCAGGGATCGGCCCGG
10694820 TCCCCCTCCGTGTGCTGTCAATCCTA
131 TCCCCCTCCGTGTGCTGTCAATCCTA
* * * * *
10694846 CTGCTGCAACCTTCGGTCCATTCT--GACTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAA
1 C--C-ACAACCCTCGGTCCA-GCTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * *
10694908 CCCACGAAATGAGCGTGCAGGCGTTGAGCCGGTCGGAGAGGCATAATGCGCAAACCAGGGATCGG
61 CCCACGAAATGAGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCAGAATGCACAAACCAGGGATCGG
** * *
10694973 CTTGGTCCACCTCTGCGTGCTGCTAGTC-TTCGCTA
126 CCCGGTCC-CC-CTCCGTG-TGCT-GTCAATC-CTA
* * * *
10695008 CCACAACCCTCGGTCCGGCTGGGGTTTAGACATGGACTGAACTCCCTATGCCTAAGTCAACCCAC
1 CCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * *
10695073 GAAACGGGTGTGCGGGTGCTCAGTCGATCGGAGAGGAAGAAT
66 GAAATGAGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCAGAAT
10695115 ACGCAAGCTG
Statistics
Matches: 212, Mismatches: 43, Indels: 23
0.76 0.15 0.08
Matches are distributed among these distances:
155 1 0.00
157 2 0.01
158 103 0.49
159 16 0.08
160 76 0.36
161 7 0.03
162 7 0.03
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (156 bp):
CCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAATGAGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCAGAATGCACAAACCAGGGATCGGCCCGG
TCCCCCTCCGTGTGCTGTCAATCCTA
Found at i:10695226 original size:26 final size:26
Alignment explanation
Indices: 10695190--10695242 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10695180 CCGGTCTGAT
*
10695190 CTTAGACTGGGAATTAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
10695216 CTTAGATTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
10695242 C
1 C
10695243 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:10695585 original size:26 final size:26
Alignment explanation
Indices: 10695556--10695608 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10695546 TCCGATCGAT
10695556 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
10695582 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
10695608 C
1 C
10695609 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:10697037 original size:158 final size:156
Alignment explanation
Indices: 10696803--10697302 Score: 515
Period size: 158 Copynumber: 3.2 Consensus size: 156
10696793 ACTCCGTATG
* *
10696803 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGT
** *
10696868 TAGTCGAAGAGGCAAAATACGCAAGCCGGGGATCAGCCCGGTGCCCCCTGCGTGCTGTCGATCCT
66 CGGTCGGAGAGGCAAAATACGCAAGCCGGGGATC-GCCCGGT-CCCCCTGCGTGCTGTCGATCCT
** ** *
10696933 GCTGCTGCAACCCTTGGTCTGGTCCAAT
129 GCTGCAACAACCCTTGGTCCAGTCCGAT
** * * *
10696961 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCCTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * * * * *
10697025 CCGGTCGGAGAGGCATAATACGCAAGCAGAGGATCGGCACAGTCCCCCTCTTCGTGCTGTCGGTC
65 TCGGTCGGAGAGGCAAAATACGCAAGCCGGGGATC-GCCCGGT-CCCC-CTGCGTGCTGTCGATC
* * * **
10697090 CTGTTGCAAC-ACCCTCGGTCCAG-CTGGGG
127 CTGCTGCAACAACCCTTGGTCCAGTC-CGAT
* *
10697119 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGT
* * * * * * *
10697184 CGATCAGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCTTGCGTGCTGCCGATCCT
66 CGGTCGGAGAGGCAAAATACGCAAGCCGGGGATCG-CCCGGTCCCCC-TGCGTGCTGTCGATCCT
* *
10697249 GCTGCCACAACCC-TCGTCCAGTCCGAT
129 GCTGCAACAACCCTTGGTCCAGTCCGAT
*
10697276 CTTAGA-ATGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
10697303 TTAGATGGGG
Statistics
Matches: 274, Mismatches: 59, Indels: 19
0.78 0.17 0.05
Matches are distributed among these distances:
156 3 0.01
157 56 0.20
158 193 0.70
159 22 0.08
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGT
CGGTCGGAGAGGCAAAATACGCAAGCCGGGGATCGCCCGGTCCCCCTGCGTGCTGTCGATCCTGC
TGCAACAACCCTTGGTCCAGTCCGAT
Found at i:10697832 original size:26 final size:26
Alignment explanation
Indices: 10697796--10697846 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
10697786 CCGGTCCGAT
10697796 CTTAGACTGGGAATGAACTCCATATA
1 CTTAGACTGGGAATGAACTCCATATA
*
10697822 CTTAGACTGGGGATGAACTCCATAT
1 CTTAGACTGGGAATGAACTCCATAT
10697847 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATA
Found at i:10698996 original size:158 final size:158
Alignment explanation
Indices: 10698614--10699370 Score: 559
Period size: 159 Copynumber: 4.8 Consensus size: 158
10698604 CATAGACTTT
* * *
10698614 GAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCA-TGCGGGCGCTCAG-CTGGCCGAA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAG-AGTGCGGGCACTGAGTC-GGCCGAA
* * * * * * * * * *
10698677 GAGGTAGAAAGCACAACCCGAGGACCAGCCT-GATCCCCCCTGTGTGCTGTCGATCCTGTTGCCG
64 GAGGCAGAATGCGCAAGCCGGGGA-CTGACTCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCA
* * * * **
10698741 CAACCTTC-AGTCCGGTTCGATCAGAGAC-TGG
128 CAACCCTCGA-TCCGATTTGAGCTTAGACAT-G
* * * * ** **
10698772 GAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGAGTTCGGGCGTTGAGTCGATC-AGAG
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGCGGGCACTGAGTCGGCCGA-AG
* * * **
10698836 AGGCAGAATGCGCAAGCCGGGGATTGACTCGATCCCCCCTGTGTGCTATCGATCCTGCTGCCGTA
65 AGGCAGAATGCGCAAGCCGGGGACTGACTCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCACA
* *
10698901 ACCCTCGATTCGATTTGACCTTAGAC-TGG
130 ACCCTCGATCCGATTTGAGCTTAGACAT-G
* * * * *
10698930 GAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTCCGGGCACTGAGTTGGCCGAAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGCGGGCACTGAGTCGGCCGAAGA
* * * * * * * *
10698995 GGCATAATGCGCAAGTCGAGGA-TCAGCCCGATCCCTCTCTGCGTGCTG-CCAGTCCCGCTGCCA
66 GGCAGAATGCGCAAGCCGGGGACTGA-CTCGATCCC-CCCTGCGTGCTGTCGA-TCCTGCTGCCA
* * * *
10699058 CAACCCTCGGTCCGGTTGGGGCTTAGACATG
128 CAACCCTCGATCCGATTTGAGCTTAGACATG
* * * * *
10699089 GAATGAACTCCCTATGCCTAAGCTAACCCACGAAATG-GATGTACGGGCATTGA-TCCGCTCGAA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGA-GTGCGGGCACTGAGTCGGC-CGAA
* * * * * * **
10699152 GAGGCATAATGCGCAAGCAGGGGACTGGCTCGGTCCCCCTATGCGTGCTGTCGGTCCCACTGCCA
64 GAGGCAGAATGCGCAAGCCGGGGACTGACTCGATCCCCC-CTGCGTGCTGTCGATCCTGCTGCCA
* * * *
10699217 CAACCCTCGGTCTGACTTGGGCTTAGACATG
128 CAACCCTCGATCCGATTTGAGCTTAGACATG
* * * * * * * *
10699248 GAATAAACTCCGTATGCCTAAGCCGACCCATGAAACGGGAGTGCGGGCA-AGAGGTCGGCCAAAA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGCGGGCACTGA-GTCGGCCGAAG
** * * *
10699312 ATACAGAATGCGCAAGCCGGGGA-TCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCT
65 AGGCAGAATGCGCAAGCCGGGGACT-GACTCGATCCCCCCTGCGTGCTGTCGATCCTGCT
10699371 ACTGGTCCTG
Statistics
Matches: 480, Mismatches: 100, Indels: 38
0.78 0.16 0.06
Matches are distributed among these distances:
157 7 0.01
158 226 0.47
159 238 0.50
160 9 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGCGGGCACTGAGTCGGCCGAAGA
GGCAGAATGCGCAAGCCGGGGACTGACTCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAA
CCCTCGATCCGATTTGAGCTTAGACATG
Done.