Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 60 of 402
Found at i:10699437 original size:26 final size:25
Alignment explanation
Indices: 10699408--10699459 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
10699398 CCAGTCCGAT
10699408 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCC-TATG
10699434 CTTAGACATGGAATGAACTCCTATG
1 CTTAGACATGGAATGAACTCCTATG
10699459 C
1 C
10699460 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 5 0.20
26 19 0.76
27 1 0.04
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACATGGAATGAACTCCTATG
Found at i:10700318 original size:26 final size:26
Alignment explanation
Indices: 10700289--10700341 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10700279 CCTGTCCGAT
*
10700289 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
10700315 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
10700341 C
1 C
10700342 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:10700561 original size:368 final size:360
Alignment explanation
Indices: 10699726--10700670 Score: 867
Period size: 368 Copynumber: 2.6 Consensus size: 360
10699716 GGTCTCGCTG
* *
10699726 CCACAACC-CTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 CCACAACCTC-CGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * *
10699790 TGAAACGGGCATGCGGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCG
65 TGAAACGAGCGTGCGGGCACTCAG-CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCG
* * * *
10699855 GTCCCCCCTGCGTGCTATCGATCTTGCTGTCGTAACCTTCAGTCCGATCCAATCTTTGACTGGGA
129 ATCCCCCCTGCGTGCTACCGATCTTGCTGTCATAACCTTCAGTCCGATCCAATCTTAGACTGGGA
* *
10699920 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCTATATGCCCAAGTCAACCAACGAAACGAACG
194 ATGAACTCCGTATGCTTAGACTAGGGATGAACTCCATATGCCCAAGTCAACCAACGAAACGAACG
* * ** **
10699985 TGTGGGCACTCAGTCGGCAAGAGAGGCCGACCGGGGAGGCATAATGTGCAAGCCAGGGATCAGCC
259 TGAGGG--CT-AGTCGGC---A-AGGCCGACCGGAGAGGCATAATGCACAAGCCAACGATCAGCC
*
10700050 CGATCCCCCTCTACGTGCTATCGATCTCGCTGCCAGTCCTGCTA
317 CGATCCCCCTCTACGTGCTATCGATCCCGCTGCCAGTCCTGCTA
* * * * * * *
10700094 CCACAACCTTCGGTTCGACTGGGGCTTGGACATGGAATGAACTCCGTACGCCTAGGTCAACCCAC
1 CCACAACCTCCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * * * * *
10700159 GAAATGAGCGTGCGGGCACTTAGCCAGCCGGAGAGGCAGAATACGCAAGTCGGGGATC-AGCCCG
66 GAAACGAGCGTGCGGGCACTCAGCGA-TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCG
*
10700223 ATCCCCCCCTGCGTGCTACCGATCCTACTACTGGTCCTGTCACTATAACCCTT-GGTCCTG-TCC
129 AT-CCCCCCTGCGTGCTACCGA---T-CT--T-G--CTGT--C-ATAA-CCTTCAGTCC-GATCC
* * * * *
10700286 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTATGTCAA
179 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCATATGCCCAAGTCAA
* * * * * *
10700351 CCCATGAAACGAGCGTGAGGG-T-G-C-TC-A-GCTGGCCGGAGAGGCATAATGCACAAGCCAAC
244 CCAACGAAACGAACGTGAGGGCTAGTCGGCAAGGCCGACCGGAGAGGCATAATGCACAAGCCAAC
** * * * * *
10700410 GATCAGCCCGATCCCTTTTTGCGTGCTA-CTGATCCCGCTGTCGGTCCTGCTG
309 GATCAGCCCGATCCCCCTCTACGTGCTATC-GATCCCGCTGCCAGTCCTGCTA
* * * *
10700462 CTACAA-CTCCCTGTCCGGCTGGGGGTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
1 CCACAACCT-CCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
** * * *
10700526 TGAAACGAGCGTGCGGGGGCTCAGTCGATCGGAGAGGTAGAATGCGCAAGCCGGGGAACAACCC-
65 TGAAACGAGCGTGCGGGCACTCAG-CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCG
* * ** * * * * * * *
10700590 AGTCCCCCCTGCTTGTTGTCAATCCTGCTG-C-TGCAACCCTCGGTCCGATCCGATCTTAGATTA
129 A-TCCCCCCTGCGTGCTACCGATCTTGCTGTCAT--AACCTTCAGTCCGATCCAATCTTAGACTG
10700653 GGAATGAACTCCGTATGC
191 GGAATGAACTCCGTATGC
10700671 CTAAGTCAAC
Statistics
Matches: 469, Mismatches: 81, Indels: 67
0.76 0.13 0.11
Matches are distributed among these distances:
353 1 0.00
354 4 0.01
355 38 0.08
358 3 0.01
360 1 0.00
361 1 0.00
363 1 0.00
364 1 0.00
367 21 0.04
368 273 0.58
369 22 0.05
372 1 0.00
373 2 0.00
374 1 0.00
375 2 0.00
376 2 0.00
378 5 0.01
380 1 0.00
381 84 0.18
382 5 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (360 bp):
CCACAACCTCCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
GAAACGAGCGTGCGGGCACTCAGCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGAT
CCCCCCTGCGTGCTACCGATCTTGCTGTCATAACCTTCAGTCCGATCCAATCTTAGACTGGGAAT
GAACTCCGTATGCTTAGACTAGGGATGAACTCCATATGCCCAAGTCAACCAACGAAACGAACGTG
AGGGCTAGTCGGCAAGGCCGACCGGAGAGGCATAATGCACAAGCCAACGATCAGCCCGATCCCCC
TCTACGTGCTATCGATCCCGCTGCCAGTCCTGCTA
Found at i:10700754 original size:158 final size:157
Alignment explanation
Indices: 10700495--10700805 Score: 340
Period size: 158 Copynumber: 2.0 Consensus size: 157
10700485 GGTTAGACAT
** * * * * *
10700495 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGGGCTCAGTCGATCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCGCTCAGTAGATCGAAG
* * * *
10700560 AGGTAGAATGCGCAAGCCGGGGAACAACCCAGTCCCCCCTGCTTGTTGTCAATCCTGCTGCTGCA
66 AGGCAGAATGCGCAAGCCGGGGAACAACCCAGTCCCCCCTGCGTGCTGTCAATCCTGCTACT-CA
10700625 ACCCTCGGTCC-GATCCGATCTTAGATTA
130 ACCCTCGGTCCAG-TCCGATCTTAGATTA
* * *
10700653 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCAGGCGCTGAGCTAG-TCGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCGCTCAG-TAGATCGAA
* * * * ** * * *
10700717 GAGGCAGAATGGGCATGCCGTGGATCGGCCC-GATCCCCCTTGCGTGCTGTCGATCTTGCTACTC
65 GAGGCAGAATGCGCAAGCCGGGGAACAACCCAG-TCCCCCCTGCGTGCTGTCAATCCTGCTACTC
* *
10700781 AACCCTCGTTCCAGTTCGATCTTAG
129 AACCCTCGGTCCAGTCCGATCTTAG
10700806 GCTGGGATTG
Statistics
Matches: 125, Mismatches: 25, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
157 23 0.18
158 100 0.80
159 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCGCTCAGTAGATCGAAG
AGGCAGAATGCGCAAGCCGGGGAACAACCCAGTCCCCCCTGCGTGCTGTCAATCCTGCTACTCAA
CCCTCGGTCCAGTCCGATCTTAGATTA
Found at i:10701035 original size:26 final size:26
Alignment explanation
Indices: 10700997--10701048 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10700987 CCTGTCCAAT
*
10700997 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
10701023 CTTAGACAT-GGAATGAAATCCGTATG
1 CTTAGAC-TGGGAATGAAATCCGTATG
10701049 TTTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:10701133 original size:196 final size:196
Alignment explanation
Indices: 10700780--10701157 Score: 456
Period size: 196 Copynumber: 1.9 Consensus size: 196
10700770 TCTTGCTACT
* * * * * * *
10700780 CAACCCTCGTTCCAGTTCGATCTTAGGCTGGGATTGAACTCCATATGCTTAGACTGAGCATGAAC
1 CAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGAGAATGAAA
* * * *
10700845 TCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCCCCCAGCTGATCGGAGAGGCAAAAT
66 TCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCCCCCAGCTAACCGGAGAGGCAAAAT
* * * *
10700910 ACGTAAGTCTGGGATAGGCTTGGTCCCCCCTGCATGCTATCGATCCTGCTACTGGACCTGCTACC
131 ACATAAGCCGGGGATAGGCTCGGTCCCCCCTGCATGCTATCGATCCTGCTACTGGACCTGCTACC
10700975 G
196 G
* *
10700976 CAACCCTCGGTCCTGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATG-GAATGAA
1 CAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TGAGAATGAA
* ** * * *
10701040 ATCCGTATGTTTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-TCAACCGGAGAGGCAAA
65 ATCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCCCCCAGCT-AACCGGAGAGGCAAA
* * * * *
10701104 ATGCATAAGCCGGGGACT-GGGTCGGTCCCCCTTGCGTGCTGTCGATCCTGCTAC
129 ATACATAAGCCGGGGA-TAGGCTCGGTCCCCCCTGCATGCTATCGATCCTGCTAC
10701158 CGTAACCCTC
Statistics
Matches: 151, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
195 1 0.01
196 147 0.97
197 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (196 bp):
CAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGAGAATGAAA
TCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCCCCCAGCTAACCGGAGAGGCAAAAT
ACATAAGCCGGGGATAGGCTCGGTCCCCCCTGCATGCTATCGATCCTGCTACTGGACCTGCTACC
G
Found at i:10701566 original size:26 final size:26
Alignment explanation
Indices: 10701522--10701572 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
10701512 CCGGTCTGAT
* *
10701522 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* *
10701548 CTTAGACTGGGGATAAACTCCGTAT
1 CTTAGACTAGGAATAAACTCCGTAT
10701573 CCTATGTCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:10701985 original size:158 final size:158
Alignment explanation
Indices: 10701686--10702060 Score: 387
Period size: 158 Copynumber: 2.4 Consensus size: 158
10701676 CCGCTGTCGG
* ** * ** * *
10701686 TCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGAC-ATGAAATTAACTTCGTATGCCTAAG
1 TCCTGCTGCCACAACCCTCGGTCTGATTCGATCTTAGACTA-GGAATGAACTTCGTATGCCTAAG
** ** * * * * *
10701750 CCAACCCATGAAATGAGTGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCCAGGGA
65 CCAACCCACAAAATGAACGTACGGGCGCTCAGCCAGCCGGAGAGGCAGAATGAGCAAGCCAGGGA
*
10701815 CCAACACAGTCCCCCCTACT-TGTTGTTGA
130 CCAACACAGTCCCCCCT-CTATGCTGTTGA
* *
10701844 TCCTGCTGTCACAACCCTCGGTCTGA-TCAGATCTTAGACTGGGAATGAACTTCGTATGCCTAAG
1 TCCTGCTGCCACAACCCTCGGTCTGATTC-GATCTTAGACTAGGAATGAACTTCGTATGCCTAAG
* * *
10701908 TCAACCCACAAAATGAACGTACGGGTGCTGAGCCAGCCGGAGAGGCAGAATGAGCAAGCCAGGGA
65 CCAACCCACAAAATGAACGTACGGGCGCTCAGCCAGCCGGAGAGGCAGAATGAGCAAGCCAGGGA
* ** * * * *
10701973 TCGGCTCGGTCCCCTCTGTATGCTGTTGA
130 CCAACACAGTCCCCCCTCTATGCTGTTGA
* * * * *
10702002 TCTTGTTGCCGCAACCCTCGGTCTGATTCGATCTTAGGCTAGGAATGAACTCCGTATGC
1 TCCTGCTGCCACAACCCTCGGTCTGATTCGATCTTAGACTAGGAATGAACTTCGTATGC
10702061 TTAGACTGGG
Statistics
Matches: 177, Mismatches: 36, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
157 2 0.01
158 173 0.98
159 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (158 bp):
TCCTGCTGCCACAACCCTCGGTCTGATTCGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGC
CAACCCACAAAATGAACGTACGGGCGCTCAGCCAGCCGGAGAGGCAGAATGAGCAAGCCAGGGAC
CAACACAGTCCCCCCTCTATGCTGTTGA
Found at i:10705564 original size:26 final size:26
Alignment explanation
Indices: 10705528--10705577 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
10705518 GTTGACTTAG
10705528 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
10705554 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
10705578 GAGATCAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10706623 original size:26 final size:26
Alignment explanation
Indices: 10706593--10706651 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
10706583 GTTGACTTAG
10706593 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
10706619 GCATAGGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
10706645 -CAT-CGGA
1 GCATACGGA
10706652 CCAGATCGAG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 23 0.79
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10707144 original size:26 final size:26
Alignment explanation
Indices: 10707092--10707144 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10707082 GTTAGCTTAG
* *
10707092 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTATAA
10707118 GCATACAGAGTTCATTCC-TAGTATAA
1 GCATACAGAGTTCATTCCAT-GTATAA
10707144 G
1 G
10707145 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTATAA
Found at i:10707502 original size:26 final size:26
Alignment explanation
Indices: 10707472--10707524 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10707462 GTTGACTTAG
10707472 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
10707498 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
10707524 G
1 G
10707525 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10708024 original size:26 final size:26
Alignment explanation
Indices: 10707974--10708026 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10707964 GTTGGCTTAT
*
10707974 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
10708000 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
10708026 G
1 G
10708027 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:10708214 original size:26 final size:26
Alignment explanation
Indices: 10708184--10708236 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10708174 GTTGACTTAG
10708184 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
10708210 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
10708236 G
1 G
10708237 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:10708849 original size:159 final size:158
Alignment explanation
Indices: 10708210--10708869 Score: 609
Period size: 158 Copynumber: 4.2 Consensus size: 158
10708200 CCCAGTCTAA
* * * **
10708210 GCATAC-AGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGTAGGATCGGT
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * *
10708274 AGCACGCAAGGGGGACCAGGTCAA-TCC-CTGGCTTTCACATTCTACCTCTCCGACCGGCTGAGT
65 AGCACGCAGGGGGGATCA-GACAAGTCCTC-GACTTACGCATTCTGCCTCTCCGACCGGCTGAGT
* *
10708337 GCCCGCACAAC-CATTTTGTGGGTTGGCTTAG
128 GCCCGCAC-GCTCATTTCGTGGGTTGGCTTAG
* * * * * ** * * * * *
10708368 GCATAGGGAGTTCATTCCAAGTCCAAG-CCCCAGCGAACCGAGGGTTGTGGCAGCGGGACCAACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * ** ** ** *
10708432 GCACGCAGAGGAGGATCGGGC-CGATCCTCGACTTGTGCATTAGGCCTCTCCGGTCGGCTCAGTG
66 GCACGCAG-GGGGGATCAGACAAG-TCCTCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGTG
* * *
10708496 CCTGTACGCTCATTTCGTGGGTTGACTTAG
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * *
10708526 GCATAC-AGAGTTCATTCCCACTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCAGGATCGAC
** ** * *
10708590 AGCACATAGGGGGGATC-GAACCGGTCCTTGACTTACGCATTCTGCCTCTCCGACCGGTTGAGTG
65 AGCACGCAGGGGGGATCAG-ACAAGTCCTCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGTG
* * *
10708654 CCCGTACGCTCGTTCCGTGGGTTGGCTTAG
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
10708684 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCAGTATTGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCAGGATCGACA
* * *
10708749 GCACGCAGGTGGGGATCAGACAAGTCCTCGACTTACGCATTCTGCCTCTTCGACCGGCTGAGCGT
66 GCACGCAGG-GGGGATCAGACAAGTCCTCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGTGC
*
10708814 CCGCACGCTCATTTCATGGGTTGGCTTAG
130 CCGCACGCTCATTTCGTGGGTTGGCTTAG
**
10708843 AAATACGAAGTTCATT-CCATGTCTAAG
1 GCATACGAAGTTCATTCCCA-GTCTAAG
10708870 CATACAAAGT
Statistics
Matches: 395, Mismatches: 93, Indels: 27
0.77 0.18 0.05
Matches are distributed among these distances:
157 35 0.09
158 231 0.58
159 128 0.32
160 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGATCAGACAAGTCCTCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGTGCC
CGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:10708879 original size:26 final size:26
Alignment explanation
Indices: 10708845--10708897 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10708835 TGGCTTAGAA
*
10708845 ATACGAAGTTCATTC-CATGTCTAAGC
1 ATACAAAGTTCATTCTCA-GTCTAAGC
10708871 ATACAAAGTTCATTCTCAGTCTAAGC
1 ATACAAAGTTCATTCTCAGTCTAAGC
10708897 A
1 A
10708898 CGCATGGGGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.30
Consensus pattern (26 bp):
ATACAAAGTTCATTCTCAGTCTAAGC
Found at i:10709661 original size:157 final size:156
Alignment explanation
Indices: 10709205--10709696 Score: 532
Period size: 158 Copynumber: 3.1 Consensus size: 156
10709195 AAGCACACAG
* * * ** **
10709205 AGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGAGTTGTGGCGGCAAGATCGGTAGCACGCA
1 AGTTCATT-CCATGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGC-AGATCGACAGCACGCA
* * * * *
10709269 GGGGGGATC-GAGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGGTCGGTTGAGTGCCCGCACG
64 -GGGGGATCGGA-CCGATCCTCGGCTTGCGCATTATGCCTCTCCGGTCGGCTAAGCGCCCGCACG
* ** *
10709333 C-CTGTTTTATGGGTTGGCTTAGGCATGGGG
127 CTC-GTTTCATGGGTTGGCTTAGGCATACGA
* * *
10709363 AGTTCATTCCATGTCTAAG-TCCCAG-CTGGA-TCGAGGGTTGTGGTAGCGGGACCGACAGCACG
1 AGTTCATTCCATGTCTAAGAT--CAGACCGGACT-GAGGGTTGTGGTAGC-AGATCGACAGCACG
* * * * *
10709425 CAGAGGGGACCGGACCGATCCTCGGCTTGCGCATTATGCATCTCCGGCCGGCTCAGCGCCCGAAC
62 CAG-GGGGATCGGACCGATCCTCGGCTTGCGCATTATGCCTCTCCGGTCGGCTAAGCGCCCGCAC
*
10709490 GCTCGTTTCATGGGTTGACTTAGGCATACGA
126 GCTCGTTTCATGGGTTGGCTTAGGCATACGA
* *
10709521 AGTTCATTCCCA-GTCTAAGATCAGACCGGACTAAGGGTTGTGGTAGCAGTATCGACAGCACGTA
1 AGTTCATT-CCATGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAG-ATCGACAGCACGCA
* * * *
10709585 GGGGGATCGGACC-AGTCCTCAGCTTACGCATTTTGCCTCTCCGATCGGCTAAGCGCCCGCACGC
64 GGGGGATCGGACCGA-TCCTCGGCTTGCGCATTATGCCTCTCCGGTCGGCTAAGCGCCCGCACGC
10709649 TCGTTTCATGGGTTGGCTTAGGCATACGA
128 TCGTTTCATGGGTTGGCTTAGGCATACGA
10709678 AGTTCATTCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
10709697 CATACGGTTC
Statistics
Matches: 280, Mismatches: 40, Indels: 29
0.80 0.11 0.08
Matches are distributed among these distances:
156 4 0.01
157 104 0.37
158 161 0.57
159 11 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
AGTTCATTCCATGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGATCGACAGCACGCAGG
GGGATCGGACCGATCCTCGGCTTGCGCATTATGCCTCTCCGGTCGGCTAAGCGCCCGCACGCTCG
TTTCATGGGTTGGCTTAGGCATACGA
Found at i:10709709 original size:24 final size:25
Alignment explanation
Indices: 10709670--10709720 Score: 70
Period size: 24 Copynumber: 2.0 Consensus size: 25
10709660 GTTGGCTTAG
10709670 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACG-AGTTCATTCCCA-GTCTAA
10709696 GCATACG-GTTCATTCCCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
10709720 G
1 G
10709721 ATTAGACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 14 0.58
25 3 0.12
26 7 0.29
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:10709893 original size:26 final size:26
Alignment explanation
Indices: 10709864--10709916 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10709854 GTTGACTTAG
*
10709864 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
10709890 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
10709916 G
1 G
10709917 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:10710441 original size:26 final size:25
Alignment explanation
Indices: 10710393--10710441 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
10710383 GACTTAGGCG
*
10710393 TACGGAGTTCATCCCAATTTAAGCA
1 TACGGAGTTCATCCCAATCTAAGCA
*
10710418 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCA-TCCCAATCTAAG
10710442 AGCGGATCAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (25 bp):
TACGGAGTTCATCCCAATCTAAGCA
Found at i:10710920 original size:26 final size:26
Alignment explanation
Indices: 10710890--10710942 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10710880 GTTGGCTTAG
10710890 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
10710916 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10710942 G
1 G
10710943 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10711122 original size:26 final size:26
Alignment explanation
Indices: 10711086--10711138 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10711076 GTTGACTTAG
10711086 GCATACAGAGTTCA-TCCCTAATCTAA
1 GCATACAGAGTTCATTCCC-AATCTAA
10711112 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
10711138 G
1 G
10711139 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:10712163 original size:26 final size:26
Alignment explanation
Indices: 10712113--10712165 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10712103 GTTGGCTTAG
*
10712113 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
*
10712139 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
10712165 G
1 G
10712166 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:10712345 original size:26 final size:26
Alignment explanation
Indices: 10712309--10712361 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10712299 GTTGACTTAG
*
10712309 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
10712335 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
10712361 G
1 G
10712362 ATTGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:10712519 original size:184 final size:190
Alignment explanation
Indices: 10712007--10712520 Score: 569
Period size: 196 Copynumber: 2.7 Consensus size: 190
10711997 GGGTTGCAGC
* * * * * * **
10712007 AGCAGTATCGACAGCACGCAGGGAAGGATCAGACC-ATCCCCGACTTATGCATTCTACCTCTCCG
1 AGCAGGATCGACAGCACGCAGGG-GGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCG
* * * * * * *
10712071 ACCGGCTGAACGCTCGCACGCTCGTTTCATTGGTTGGCTTAGGCATACGAAGTTCATTCCATGTC
65 ATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
*
10712136 TAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGCTTACAGTAGCAAGACCA
130 TAAGCATACGGAGTTCATTCCCAATCTAAGATCGAACCGGACCAAGGCTTACA-T----AGACCA
10712201 G
190 G
* * * *
10712202 TAGCAGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGTGTATTCTGCCTCTCCG
1 -AGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCG
* * *
10712267 ATCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GT
65 ATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGT
* * * *
10712331 CTAAGCATACGGAGTTCATTCCCAATCTAAGATTGAACCAGG-TCGAGGGTT-C-T-GA-C-G
129 CTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAACC-GGACCAAGGCTTACATAGACCAG
* * * * * *
10712388 -GTAGGATCGGCAGCACGTAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTACCTCTTCGG
1 AGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGA
* *
10712452 TCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
66 TCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
10712517 AAGC
131 AAGC
10712521 CCCAGTCGGA
Statistics
Matches: 274, Mismatches: 40, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
183 3 0.01
184 114 0.42
186 1 0.00
187 1 0.00
188 2 0.01
193 1 0.00
195 8 0.03
196 139 0.51
197 5 0.02
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (190 bp):
AGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGA
TCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGCATACGGAGTTCATTCCCAATCTAAGATCGAACCGGACCAAGGCTTACATAGACCAG
Found at i:10712694 original size:26 final size:26
Alignment explanation
Indices: 10712655--10712704 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
10712645 GGCTTAGGCG
10712655 TACGGAGTTAATT-CCATGTCTAAGTA
1 TACGGAGTTAATTCCCA-GTCTAAGTA
*
10712681 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTAATTCCCAGTCTAAG
10712705 AGTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTAATTCCCAGTCTAAGTA
Found at i:10714091 original size:26 final size:26
Alignment explanation
Indices: 10714062--10714114 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10714052 GTTGACTTAG
10714062 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
10714088 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
10714114 G
1 G
10714115 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:10714592 original size:26 final size:26
Alignment explanation
Indices: 10714563--10714615 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10714553 GTTGACTTAG
*
10714563 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
10714589 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
10714615 G
1 G
10714616 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10715358 original size:26 final size:26
Alignment explanation
Indices: 10715328--10715380 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10715318 GTTGACTTAG
10715328 GCATACAGAGTTCATCTCC-AGTCTAA
1 GCATACAGAGTTCAT-TCCTAGTCTAA
**
10715354 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
10715380 G
1 G
10715381 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:10715833 original size:158 final size:157
Alignment explanation
Indices: 10715354--10715855 Score: 578
Period size: 158 Copynumber: 3.2 Consensus size: 157
10715344 TCCAGTCTAA
* * * * *
10715354 GCATATGGAGTTCATTCC-TAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGTAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * *
10715418 AGCACGTAGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGC
65 AGCACGCAGAGGGGATCGGGCCGAT-CCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGC
*
10715483 CCGCATGCCCGTTTCATGGGTTGGCTTAG
129 CCGCATGCTCGTTTCATGGGTTGGCTTAG
** * ** * * *
10715512 GCATGGGGAGTTCATTCCATGTCTAAG-CCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-CCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
10715576 AGCACGCAGAGGAGGATCGGGTCGATCCCTGGCTTACGCATTATGCCTTTCCGACCGGCTCAGTG
65 AGCACGCAGAGG-GGATCGGGCCGATCCC-GGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCG
* * *
10715641 CCCGCACGCTCGTTTTATGGGTTGACTTAG
128 CCCGCATGCTCGTTTCATGGGTTGGCTTAG
* * * *
10715671 GCATACGGAGTTCATTCTCA-GTCTAAGATTGGATCAGAACGAGGGTTGCGGCAGCAGGATTGAC
1 GCATACGGAGTTCATTC-CATGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * ** *
10715735 AGCACGCAGAGGGGATCGGACCGATCCTCAGCTTGTACATTTTGCCTCTCCGACCGGCTGAGCGC
65 AGCACGCAGAGGGGATCGGGCCGATCC-CGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGC
* * *
10715800 CTGAATGCTCGTTTCGTGGGTTGGCTTAG
129 CCGCATGCTCGTTTCATGGGTTGGCTTAG
10715829 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
10715856 CATACGAAGT
Statistics
Matches: 283, Mismatches: 53, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
157 4 0.01
158 149 0.53
159 127 0.45
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGAGGGGATCGGGCCGATCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCC
GCATGCTCGTTTCATGGGTTGGCTTAG
Found at i:10715866 original size:26 final size:26
Alignment explanation
Indices: 10715829--10715881 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10715819 GTTGGCTTAG
*
10715829 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
10715855 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
10715881 G
1 G
10715882 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:10716703 original size:158 final size:158
Alignment explanation
Indices: 10716223--10716724 Score: 453
Period size: 158 Copynumber: 3.2 Consensus size: 158
10716213 CCCAGTCTAA
* * * *
10716223 GCATACGAAATTCATTCACA-GTCTAAGATCGGACCAGA-TTGAAGGTTGCGGCCGCAGGATCGA
1 GCATACGAAGTTCATTC-CATGTCTAAGATCAGACCAGACTT-AGGGTTGCGGCAGCAGGATCGA
* * * * * * *
10716286 TAGCATGCAGGGGGGACCAGATCGATCCTC-AGCTTGTGGATTCTGCCTCTTTGATCGGTTGAGC
64 TAGCATGCAGGGGGGATCGGGTCGATCCCCGA-CTTGTGCATTATGCCTCTTCGATCGGTTGAGC
* *
10716350 GCCCGTACGCCCGTTTCATGGGTTGGCTTAG
128 GCCCGAACGCTCGTTTCATGGGTTGGCTTAG
* * * * * * * *
10716381 GCATAAGGAGTTCATTCCATGTCTAAGCCTCAG--CGGAACTGAGGGTTGTGGCAACGGGA-CAG
1 GCATACGAAGTTCATTCCATGTCTAAG-ATCAGACCAG-ACTTAGGGTTGCGGCAGCAGGATC-G
* ** * * * * * * * *
10716443 ACAGCATGCAAAAGGTGATCGAGCCGATCCCCGACATGCGCATTATGCCTTTTCGATCGGCTCAG
63 ATAGCATGC-AGGGGGGATCGGGTCGATCCCCGACTTGTGCATTATGCCTCTTCGATCGGTTGAG
* * **
10716508 CGCCCGAACGCTCATTTC-GGGGATTCACTTAG
127 CGCCCGAACGCTCGTTTCATGGG-TTGGCTTAG
* *
10716540 GCATACGAAGTTCATTCC-TAGTCTAAGATCAGACCAGACTTAGGGTTGCGACAGCAAGATCGAT
1 GCATACGAAGTTCATTCCAT-GTCTAAGATCAGACCAGACTTAGGGTTGCGGCAGCAGGATCGAT
* * * * * *
10716604 AGCATGCAGGGGGGATCGGGTCGGTCCCCGACTTGTGCATTTTGCATCTCCGACCGGTTGAGTGC
65 AGCATGCAGGGGGGATCGGGTCGATCCCCGACTTGTGCATTATGCCTCTTCGATCGGTTGAGCGC
*
10716669 CCGCACGCTCGTTTCATGGGTTGGCTTAG
130 CCGAACGCTCGTTTCATGGGTTGGCTTAG
*
10716698 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGAAGTTCATTCCATGTCTAAG
10716725 CATACGGAGT
Statistics
Matches: 261, Mismatches: 69, Indels: 28
0.73 0.19 0.08
Matches are distributed among these distances:
157 5 0.02
158 138 0.53
159 114 0.44
160 4 0.02
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.25
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCAGACCAGACTTAGGGTTGCGGCAGCAGGATCGATA
GCATGCAGGGGGGATCGGGTCGATCCCCGACTTGTGCATTATGCCTCTTCGATCGGTTGAGCGCC
CGAACGCTCGTTTCATGGGTTGGCTTAG
Found at i:10716728 original size:26 final size:26
Alignment explanation
Indices: 10716698--10716750 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10716688 GTTGGCTTAG
10716698 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCGCA-GTCTAA
10716724 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCGCAGTCTAA
10716750 G
1 G
10716751 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCGCAGTCTAA
Found at i:10717028 original size:514 final size:508
Alignment explanation
Indices: 10716095--10718634 Score: 1476
Period size: 514 Copynumber: 4.9 Consensus size: 508
10716085 CCAGCAGTGG
* *
10716095 GATCGATAGCATGCAGAGGGGGATCGGG-CTGATCCCCGACTTGTGCATTATGTCTCTCCGATCG
1 GATCGATAGCATGCAG-GGGGGATCGGGTC-GGTCCCCGACTTGTGCATTATG-CTCTCCGACCG
* * *
10716159 GTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCA-GTCTAA
63 GTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAA
* * * *
10716223 GCATACGAAATTCATTCACAGTCTAAGAT----CGGACCAGA-TTGAAGGTTGC-G----GCCGC
127 GCATACGGAATTCATTCACAGTCTAAGATCAGCCGGACCAGAGTT-ACGGTAGCAGACCAGCAGC
* * * * * ** *
10716278 AGGATCGATAGCATGCAGGGGGGACCAGATCGATCCTCAGCTTGTGGATTCTGCCTCTTTGATCG
191 AGGATCGATAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCG-TCA
* * *
10716343 GTTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAG
255 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAG
* *
10716408 CCTCAGCGGAACTGAGGGTTGTGGCAACGGGACAGACAGCATGCAAAAGGTGATCGAGCCGATCC
320 CCTCAGCGGAACTGAGGGTTGTGGCAACGGGACAGACAGCATGCAAAAGGGGATCGAGCCAATCC
* * *
10716473 CCGACATGCGCATTATGCCTTTTCGATCGGCTCAGCGCCCGAACGCTCATTTCG-GGGATTCACT
385 CCGACATGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGAACGCTCATTTCGTGGG-TTCACT
* * *
10716537 TAGGCATACGAAGTTCATTCCTAGTCTAAG-ATCAGACCAGACT-TAGGGTTGCGACAGCAA
449 TAGGCATACGAAGTTCATTCCTAGTCTAAGAAT-AGACC-GAATAGAGGGTTACGACAGCAA
*
10716597 GATCGATAGCATGCAGGGGGGATCGGGTCGGTCCCCGACTTGTGCATTTTGCATCTCCGACCGGT
1 GATCGATAGCATGCAGGGGGGATCGGGTCGGTCCCCGACTTGTGCATTATGC-TCTCCGACCGGT
*
10716662 TGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
65 TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
* *
10716727 TACGGAGTTCATTCGCAGTCTAAGATCAGACCGGACCGAGAGTTACGGTAGCAAGACCAGCAGCA
130 TACGGAATTCATTCACAGTCTAAGATCAG-CCGGACC-AGAGTTACGGTAGC-AGACCAGCAGCA
* * * * *
10716792 GGATCGGTAGCACGCTGTGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAGTCA
192 GGATCGATAGCACGCAG-GGGGGACCAGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCC-GTCA
* * * * *
10716857 GCTGAGTGCCCACACGCTCGTGTCATGGGTTGGCTTAGGCATAGGGTGTTCATTCCATGTCTAAG
255 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAG
* ** * * * *
10716922 CC-CTAGCTGG-ACTGAGGGTTGTGGCAGCGGGACCTACAGC-T-CGTAGAGGAGGA-CTGGGTC
320 CCTC-AGC-GGAACTGAGGGTTGTGGCAACGGGACAGACAGCATGC-AAAAGG-GGATC-GAGCC
* * * * **
10716982 AATCCCTTG-CTTGCGTATTATGCCTCTCCGGCCGGCTCAGCGCCCGAACGCTTGTTTCGTGGGT
380 AATCCC-CGACATGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGAACGCTCATTTCGTGGGT
* * * ** * *
10717046 TGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGAATGGACCGAATAGAGGGTTACGGTAGTAG
444 TCACTTAGGCATACGAAGTTCATTCCTAGTCTAAGAATAGACCGAATAGAGGGTTACGACAGCAA
* * * * * * * * * *
10717111 GATCAACAGCACGCAGGAAGGGATCGGGTCGGTCACCGACTTGCGCAATCTGCCTCTTCGACTGG
1 GATCGATAGCATGCAGG-GGGGATCGGGTCGGTCCCCGACTTGTGCATTATG-CTCTCCGACCGG
* * * * ** * *
10717176 CTGAGCACCCGCACACTCCTTTTGTAGGTTGGCTTAGTCATACGGAGTTCATTCCATGTCTAAGC
64 TTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * * * * * *
10717241 ATACGGATTTCAATCTCAGTCTAAGATCAGGCCGGACTAAGGGTTGCGGTAGCAGGACCAGTAGC
129 ATACGGAATTCATTCACAGTCTAAGATCA-GCCGGAC-CAGAGTTACGGTAGCA-GACCAGCAGC
* * * * * * *
10717306 AGGATCGACAGCACGCAGAGGGGATC-GAGTTGATCCCCGACTTGTGCATTCTGCCTCTCCGACC
191 AGGATCGATAGCACGCAGGGGGGACCAG-GTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGTCA
* * * * *
10717370 GACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCA-GTCTA
255 G-CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCAT-TCCATGTCTA
* * ***** * **
10717434 AGCAT-A-CGGAGTTCATTCCCATCTGACATCGGACTGAATCGAGGGTTGCAGTAGCAGGGTCGA
318 AGCCTCAGCGGA--AC-TGAGGGT-TG---T-GG-C--AA-C--GGG--ACAG-A-CAGCAT-G-
* * * * ** ** **
10717497 CAACACACAGGGGGGATC-AGGCCTATCCCTGACTTGCGCATTCTGCCTCTTTGGTCGGCTGTGC
363 C-A-A-A-A--GGGGATCGA-GCCAATCCCCGACATGCGCATTATGCCTCTCCGACCGGCTCAGC
* * * ** * * * **
10717561 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC-ATGTTTAAGCCCTAG
421 GCCCGAACGCTCATTTCGTGGGTTCACTTAGGCATACGAAGTTCATTCCTA-GTCTAAG-AATAG
* ** * *
10717625 -CCGAATTGAGGGTTGTGGCAGCGA
484 ACCGAATAGAGGGTTACGACAGCAA
** ** * * * * * ** * * * * *
10717649 GA-CTGGCAGCGCGTAGAGGGGGACCAGGTCAGTCCCCGATTTACGCATTCTACCTTTTCGGCCG
1 GATC-GATAGCATGCAG-GGGGGATCGGGTCGGTCCCCGACTTGTGCATTAT-GCTCTCCGACCG
* * * *
10717713 GTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCCTAGTCTAA
63 GTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAA
* * * * * * * *
10717777 GCATACAGAGTTCATTCCCAGTCTAAGAT----TGGACCAGA-TCGAGGGTTGC-G----GTAGC
127 GCATACGGAATTCATTCACAGTCTAAGATCAGCCGGACCAGAGT-TACGGTAGCAGACCAGCAGC
* * * * * ** * * * * *
10717832 AAGATCGACAGCACGCAGGGGGGATCGGGCCGATCCTTGGCTTGCGCATTTTGCCTTTTCGATCG
191 AGGATCGATAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCG-TCA
* * * * * * * **
10717897 GCTAAGTGCCCGCACGCCCGTTTCGTGTGTTGGTTTAGGCATAGGGAGTTCATTAAATGTCTAAG
255 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAG
* ** * * * * * * *
10717962 -CTCCAGCCGG-ACTGAGGGTTGTGGCAGCAAGATC-GGCAGCACGCAGAGGGGGGTCGGGCCGA
320 CCT-CAG-CGGAACTGAGGGTTGTGGCAACGGGA-CAGACAGCATGCAAAAGGGGATCGAGCCAA
* * * ** * ** * *
10718024 TCCCCGGCTTGCGCATTATACCTCTCCG-GTGACTCAGCGCCCGAACGCTTGTTTCGTGGGCTGA
382 TCCCCGACATGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGAACGCTCATTTCGTGGGTTCA
* * * ** * ** * *
10718088 CTTAGGCATAC-AGAGTTCATTCCCAGTCTTAG-ATCGGACCGAACCGAAGGTTGTGGCAGCAG
447 CTTAGGCATACGA-AGTTCATTCCTAGTCTAAGAAT-AGACCGAATAGAGGGTTACGACAGCAA
* * * ** * * * * * *
10718150 GATCGACAGCACGCAGGTGGGGACCGTATCGGTCCTCGGCTTGCGCAATCTA-CCTCTCCGGCCC
1 GATCGATAGCATGCAGG-GGGGATCGGGTCGGTCCCCGACTTGTGC-AT-TATGCTCTCCGACCG
* * * * * * * *
10718214 GTTGAGTGCCCGTACGTTCGTTCCGTTGGTTGGCTTAGGCATATGGAGTTCATTCCTTGTCTAAG
63 GTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * * * * * * * * *
10718279 CATATGGAGTTCATTCCCAGTGTAAGATCGAACCGGACCAAGGGTTGCGGCAGTAGGACCAGTAA
128 CATACGGAATTCATTCACAGTCTAAGATC-AGCCGGACC-AGAGTTACGGTAGCA-GACCAGCAG
* ** ** * * ** * *
10718344 CAGGATTGGCAGCACGCAGGGAAGACC-GAGCCGATCCTCGGCTTACGCATTCTGCCTCTTCGGC
190 CAGGATCGATAGCACGCAGGGGGGACCAG-GTCGATCCCCGGCTTGTGCATTCTGCCTC-TCCGT
* * *
10718408 CAGCTGAGCGCCTGCACGC-CTGTTTCATGGGTTAGCTTAGGCATTCA-GAGTTCATTCCATGTC
253 CAGCTGAGCGCCCGCACGCTC-GTTTCATGGGTTGGCTTAGGCA-TAAGGAGTTCATTCCATGTC
* * * * * * * * *
10718471 TAAGCCCCAGTCGG-ACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCC
316 TAAGCCTCAG-CGGAACTGAGGGTTGTGGCAACGGGACAGACAGCATGCAAAAGGGGATCGAGCC
* * * * * * * * *
10718535 GATCCCCGGCTTGTGCATTCTGGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
380 AATCCCCGACATGCGCATTAT-GCCTCTCCGACCGGCTCAGCGCCCGAACGCTCATTTCGTGGGT
** *
10718600 TGGCTTAGGCATACGGAGTTCATTCC-ATGTCTAAG
444 TCACTTAGGCATACGAAGTTCATTCCTA-GTCTAAG
10718635 CATACGAAGT
Statistics
Matches: 1584, Mismatches: 339, Indels: 217
0.74 0.16 0.10
Matches are distributed among these distances:
499 1 0.00
500 6 0.00
501 308 0.19
502 57 0.04
503 1 0.00
505 1 0.00
506 11 0.01
507 15 0.01
508 4 0.00
509 3 0.00
510 3 0.00
511 2 0.00
512 6 0.00
513 204 0.13
514 339 0.21
515 231 0.15
516 5 0.00
517 1 0.00
519 2 0.00
520 4 0.00
521 2 0.00
523 1 0.00
524 3 0.00
525 4 0.00
526 106 0.07
527 4 0.00
528 1 0.00
529 4 0.00
530 4 0.00
531 2 0.00
532 7 0.00
533 4 0.00
534 1 0.00
535 1 0.00
537 9 0.01
538 221 0.14
539 6 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (508 bp):
GATCGATAGCATGCAGGGGGGATCGGGTCGGTCCCCGACTTGTGCATTATGCTCTCCGACCGGTT
GAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
ACGGAATTCATTCACAGTCTAAGATCAGCCGGACCAGAGTTACGGTAGCAGACCAGCAGCAGGAT
CGATAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGTCAGCTGAG
CGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCTCAG
CGGAACTGAGGGTTGTGGCAACGGGACAGACAGCATGCAAAAGGGGATCGAGCCAATCCCCGACA
TGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGAACGCTCATTTCGTGGGTTCACTTAGGCAT
ACGAAGTTCATTCCTAGTCTAAGAATAGACCGAATAGAGGGTTACGACAGCAA
Found at i:10717252 original size:26 final size:26
Alignment explanation
Indices: 10717214--10717265 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10717204 TTGGCTTAGT
*
10717214 CATACGGAGTTCATTC-CATGTCTAAG
1 CATACGGAGTTCAATCTCA-GTCTAAG
*
10717240 CATACGGATTTCAATCTCAGTCTAAG
1 CATACGGAGTTCAATCTCAGTCTAAG
10717266 ATCAGGCCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCAATCTCAGTCTAAG
Found at i:10717787 original size:26 final size:26
Alignment explanation
Indices: 10717751--10717803 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10717741 GTTGACTTAG
*
10717751 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
10717777 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10717803 G
1 G
10717804 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10717983 original size:343 final size:341
Alignment explanation
Indices: 10717373--10718013 Score: 887
Period size: 343 Copynumber: 1.9 Consensus size: 341
10717363 TCCGACCGAC
*
10717373 TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
1 TGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
* * * * *
10717438 TACGGAGTTCATTCCCATCTGACATCGGACTGAATCGAGGGTTGCAGTAGCAGGGTCGACAACAC
66 TACAGAGTTCATTCCCATCTAACATCGGACAGAATCGAGGGTTGCAGTAGCAAGATCGACAACAC
* *
10717503 ACAGGGGGGATCAGGCCTATCCCTGACTTGCGCATTCTGCCTCTTTGGTCGGCTGTGCACCCGCA
131 ACAGGGGGGATCAGGCCGATCCCTGACTTGCGCATTCTGCCTCTTTGATCGGCTGTG-ACCCGCA
* ** * *
10717568 CGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCTAGCCGAATTG
195 CGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTAAATGTCTAAGCCCTAGCCGAACTG
* * *
10717633 AGGGTTGTGGCAGCGAGA-CTGGCAGCGCGTAGAGGGGGACCAGGTCAGTCCCCGATTTACGCAT
260 AGGGTTGTGGCAGCAAGATC-GGCAGCACGCAGAGGGGGACCAGGTCAGTCCCCGATTTACGCAT
10717697 TCTACCTTTTCGGCCGGT
324 TCTACCTTTTCGGCCGGT
* * * *
10717715 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCA
1 TGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
* * * *
10717780 TACAGAGTTCATTCCCAGTCTAAGATTGGACCAG-ATCGAGGGTTGCGGTAGCAAGATCGACAGC
66 TACAGAGTTCATTCCCA-TCTAACATCGGA-CAGAATCGAGGGTTGCAGTAGCAAGATCGACAAC
* * * * *
10717844 ACGCAGGGGGGATCGGGCCGATCCTTGGCTTGCGCATTTTGCCT-TTTCGATCGGCTAAGTG-CC
129 ACACAGGGGGGATCAGGCCGATCCCTGACTTGCGCATTCTGCCTCTTT-GATCGGCT--GTGACC
* *
10717907 CGCACGCCCGTTTCGTGTGTTGGTTTAGGCATAGGGAGTTCATTAAATGTCTAAGCTCC-AGCCG
191 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTAAATGTCTAAGC-CCTAGCCG
*
10717971 GACTGAGGGTTGTGGCAGCAAGATCGGCAGCACGCAGAGGGGG
255 AACTGAGGGTTGTGGCAGCAAGATCGGCAGCACGCAGAGGGGG
10718014 GTCGGGCCGA
Statistics
Matches: 260, Mismatches: 32, Indels: 13
0.85 0.10 0.04
Matches are distributed among these distances:
342 79 0.30
343 173 0.67
344 5 0.02
345 3 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.24
Consensus pattern (341 bp):
TGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
TACAGAGTTCATTCCCATCTAACATCGGACAGAATCGAGGGTTGCAGTAGCAAGATCGACAACAC
ACAGGGGGGATCAGGCCGATCCCTGACTTGCGCATTCTGCCTCTTTGATCGGCTGTGACCCGCAC
GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTAAATGTCTAAGCCCTAGCCGAACTGA
GGGTTGTGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCAGGTCAGTCCCCGATTTACGCATTC
TACCTTTTCGGCCGGT
Found at i:10718140 original size:158 final size:158
Alignment explanation
Indices: 10717777--10718209 Score: 415
Period size: 158 Copynumber: 2.7 Consensus size: 158
10717767 CCTAGTCTAA
* * * *
10717777 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACC-AGATCGAGGGTTGCGGTAGCAAGATCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGTGGCAGCAAGATCGAC
** * * * * * *
10717841 AGCACGCAGGGGGGATCGGGCCGATCCTTGGCTTGCGCATTTTGCCTTTTCGATCGGCTAAGTGC
65 AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGATCGACTAAGCGC
* * * **
10717906 CCGCACGCCCGTTTCGTGTGTTGGTTTAG
130 CCGAACGCCCGTTTCGTGGGCTGACTTAG
** ** * * * * *
10717935 GCATAGGGAGTTCATT-AAATGTCTAAGCTC-CAGCCGGACTGAGGGTTGTGGCAGCAAGATCGG
1 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGA-CCGAACCGAGGGTTGTGGCAGCAAGATCGA
* * *
10717998 CAGCACGCAGAGGGGGGTCGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGGT-GACTCAGC
64 CAGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGATCGACTAAGC
**
10718062 GCCCGAACGCTTGTTTCGTGGGCTGACTTAG
128 GCCCGAACGCCCGTTTCGTGGGCTGACTTAG
* * *
10718093 GCATACAGAGTTCATTCCCAGTCTTAGATCGGACCGAACCGAAGGTTGTGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCAGCAAGATCGACA
* *** * * * *
10718158 GCACGCAGGTGGGGACCGTATCGGTCCTCGGCTTGCGCAATCTACCTCTCCG
66 GCACGCAGG-GGGGATCGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCG
10718210 GCCCGTTGAG
Statistics
Matches: 216, Mismatches: 52, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.01
158 174 0.81
159 39 0.18
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCAGCAAGATCGACA
GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGATCGACTAAGCGCC
CGAACGCCCGTTTCGTGGGCTGACTTAG
Found at i:10718304 original size:26 final size:26
Alignment explanation
Indices: 10718252--10718304 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10718242 GTTGGCTTAG
**
10718252 GCATATGGAGTTCATTCCTTGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
10718278 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
10718304 G
1 G
10718305 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:10719531 original size:26 final size:26
Alignment explanation
Indices: 10719501--10719553 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10719491 GTTAACTTAG
*
10719501 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
10719527 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
10719553 G
1 G
10719554 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10720936 original size:159 final size:155
Alignment explanation
Indices: 10720495--10721067 Score: 502
Period size: 159 Copynumber: 3.6 Consensus size: 155
10720485 ACCACTCGTT
* * * * * * * *
10720495 CGATCCCCGGCTTGCGCATCCTGCCTCTCTAGTCGGTTGAGCGTCCGCACGCTCATTTCGTGGGT
1 CGATCCTCGGCTTGCGCATTCTGCCTCT-TCGACCGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
** * * * ** *
10720560 TGACTTAGGTGTACAGAGTTCATTCCCAGTCTAAGATCAGATCGGA-CAGAGGGTTGCGATAGTA
65 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCA-AGGGTTGCGGCAGCA
*
10720624 GGATCGACA-GCACGTAGGGGGACCGGGC
129 GGATGGACACGCA-G-AGGGGGACCGGGC
* * *
10720652 CGATACC-CGGCTTGCGCATTCTGTCTC-TCTAACCGGCTGAGCGCCCGCACGC-CTTTTCGTGG
1 CGAT-CCTCGGCTTGCGCATTCTGCCTCTTC-GACC-GCTGAGCGCCCGCACGCTCGTTTCGTGG
* * * ** * * * *
10720714 GTTGGCTTAGGCATAGGGAGTTCGTT-CCATGTCTAAGCCCTAGTCGA-ACCGAGGGTTGTGGCA
63 GTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCAGACCAAGGGTTGCGGCA
*
10720777 GCAGGACTGGTAGCACGCAGAGGGGGACCGGGT
126 GCAGGA-TGG-A-CACGCAGAGGGGGACCGGGC
* * * * * * *
10720810 CGATCCTCGACTTGCACATTGTGCCTCTTCGGCCTGCTCAGCGCCCGCACGCTCGTTTCATTGGT
1 CGATCCTCGGCTTGCGCATTCTGCCTCTTCGACC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
10720875 TGACTTAGGCATACGGAGTTCATTCCCAGTATAAGATCAGACCAGACCAAGGGTTGCGGCAGCAG
65 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAG
* *
10720940 GATCGACAACACGCA-AGGGGAGACCAGGC
130 GAT-G--GACACGCAGAGGGG-GACCGGGC
* *
10720969 CGAT-CTCCGGCTTGTGCATTCTGCCTTTTCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGG
1 CGATCCT-CGGCTTGCGCATTCTGCCTCTTCGACCG-CTGAGCGCCCGCACGCTCGTTTCGTGGG
*
10721033 TTGGCTTAGGCATACGGAG-TCATT-CCATGTCTAAG
64 TTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
10721068 CATACGGAGT
Statistics
Matches: 331, Mismatches: 63, Indels: 43
0.76 0.14 0.10
Matches are distributed among these distances:
155 4 0.01
156 53 0.16
157 47 0.14
158 77 0.23
159 143 0.43
160 7 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (155 bp):
CGATCCTCGGCTTGCGCATTCTGCCTCTTCGACCGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGG
ATGGACACGCAGAGGGGGACCGGGC
Found at i:10721076 original size:25 final size:26
Alignment explanation
Indices: 10721042--10721093 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10721032 GTTGGCTTAG
10721042 GCATACGGAG-TCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
10721067 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10721093 G
1 G
10721094 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 10 0.40
26 12 0.48
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10722129 original size:160 final size:159
Alignment explanation
Indices: 10721833--10722299 Score: 469
Period size: 160 Copynumber: 2.9 Consensus size: 159
10721823 GTCAGACCGG
* * * * ** **
10721833 ATCGAGGGTTGCAGCAGCAGGATCGACAGCACGTAGGGGGGATCTGGG-CAATCCCCGACTTACG
1 ATCGAGGGTTGCGGCAGCAAGACCAACAGCACACAGGGGGGATC-GGGCCAATCCCCGACTCGCG
* ** * * ** * *
10721897 CATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGG
65 CATTATGCCTCTCCGATCGGCTCAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGG
* *
10721962 AGTTCATTCCATTTCTAAGCCCCAG-TCGA
130 AGTTCATTCCATGTCTAAGCACCAGATCGA
* * * ** *
10721991 ATCGAGGGTTGTGGCAGTAGGACCTGCAGCACACAGAGGGGGATCGGGCCAATCCTCGACTCGCG
1 ATCGAGGGTTGCGGCAGCAAGACCAACAGCACACAG-GGGGGATCGGGCCAATCCCCGACTCGCG
** *
10722056 CATTATGCCTCTCCCGATCGGCTCAGCATTCGCATGCTCGTTTCATGGGTTGACTTAGGCATACG
65 CATTATGCCTCT-CCGATCGGCTCAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACG
* * *
10722121 GAGTTCATTCCCA-GTCTAAG-ATCAGATTGG
129 GAGTTCATT-CCATGTCTAAGCACCAGATCGA
* * * * * *
10722151 ATCGAGGGTTGCGGCAGCAAGATCAACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGC
1 ATCGAGGGTTGCGGCAGCAAGACCAACAGCACACAGGGGGGATCGGGCCAATCCCCGACTCGCGC
* * * * *
10722216 ATTATGCCTCTCCGGTCGGCTGAGCGCCCGCATGCTCATTT--TGTGGTTGGCTTAGGCATACAG
66 ATTATGCCTCTCCGATCGGCTCAGCACCCGCATGCTCGTTTCATG-GGTTGGCTTAGGCATACGG
10722279 AGTTCATTCCATGTCTAAGCA
130 AGTTCATTCCATGTCTAAGCA
10722300 TATAGAGTTC
Statistics
Matches: 253, Mismatches: 48, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
156 5 0.02
157 32 0.13
158 56 0.22
159 70 0.28
160 87 0.34
161 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
ATCGAGGGTTGCGGCAGCAAGACCAACAGCACACAGGGGGGATCGGGCCAATCCCCGACTCGCGC
ATTATGCCTCTCCGATCGGCTCAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCACCAGATCGA
Found at i:10722307 original size:26 final size:26
Alignment explanation
Indices: 10722271--10722323 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10722261 GTTGGCTTAG
10722271 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
10722297 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
10722323 G
1 G
10722324 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:10722813 original size:514 final size:512
Alignment explanation
Indices: 10721847--10723042 Score: 1381
Period size: 514 Copynumber: 2.3 Consensus size: 512
10721837 AGGGTTGCAG
* * * * * * * * *
10721847 CAGCAGGATCGACAGCACGTAGGGGGGATCTG-GGCAATCCCCGACTTACGCATTCTGCCTCTCC
1 CAGCAGGATCGACAGAACGCAGGAGGGA-CAGAGCCAATCCTCGGCTTGCACATTCTGCCTCTCC
* * *
10721911 GGCCGGCTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATTT
65 GACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
* * * * ** *
10721976 CTAAGCCCCAGTCGAATCGAGGGTTGTGGCAGTAGGACCTGCAGCACACAGAGGGGGATCGGGCC
130 CTAAGCCCCAGCCG-GTCGAGGGTTGTGGCAGCAGGACCTGCAGCACACAAAAAGGGATCGGACC
* * * * * * *
10722041 AATCCTCGACTCGCGCATTATGCCTCTCCCGATCGGCTCAGCATTCGCATGCTCGTTTCATGGGT
194 AATCCCCGACTCACGCATTATGCCTATCCCGACCGGCTCAGCA-CCGCACGCTCATTTCATGGGT
* * * *
10722106 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGATCGAGGGTTGCGGCAGCAA
258 TGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGAATCGAGGGTTGCGACAGCAA
* *
10722171 GATCAACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGC
323 GATCAACAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGC
*
10722236 TGAGCGCCCGCATGCTCATTTTGTGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCAT
388 TGAGCGCCCGCACGCTCATTTTGTGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCAT
* * * * * *
10722301 ATAGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGCTTGTGGTAGT-AGGACCAA
453 ACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGCTTGTGGCAATCAGGACCAA
* * * *
10722360 CAGCAGGATCGACAGCACGCAGAGAGGGACCGAGCCGAT-CTCGAGCTTGTACATTCTGCCTCTC
1 CAGCAGGATCGACAGAACGCAG-GAGGGACAGAGCCAATCCTCG-GCTTGCACATTCTGCCTCTC
* * * *
10722424 CGACCGACTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
64 CGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
** * * * * *
10722489 TCTAATTCCTAGCCGGTTTGAGGGTTGTGGCAGCAGGATC-GATAGCACAGAAAAAGGGA-CTGG
129 TCTAAGCCCCAGCCGG-TCGAGGGTTGTGGCAGCAGGACCTG-CAGCACACAAAAAGGGATC-GG
** * * * * **
10722552 ACTGATCCCCGGCTTACGCATTATGCCTAT-CTGGCCGGCTCAATGC-CCGCACGCTCATTTTGT
191 ACCAATCCCCGACTCACGCATTATGCCTATCCCGACCGGCTC-A-GCACCGCACGCTCATTTCAT
*
10722615 GGGTTGACTTAGGCATATGAAGTTCATTCCCCA-TCTAAGATCAGACTGAA-CTGA-GGTTGCGA
254 GGGTTGACTTAGGCATACGAAGTTCATT-CCCAGTCTAAGATCAGACTGAATC-GAGGGTTGCGA
* * * * *
10722677 CAGCAGGATCAACAAGCACGTAGGGGGGATCGGGTCGATCCTCGACTTGTGCATTCTGCCTCTCC
317 CAGCAAGATCAAC-AGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCC
* * * *
10722742 GATCGGTTGAGCGCCCGTACGCTCGTTTCATG-GGTTGGCTTAGGCTTACAGAGTTCATTCCATG
381 GATCGGCTGAGCGCCCGCACGCTCATTT--TGTGGTTGGCTTAGGCATACAGAGTTCATTCCATG
* * *
10722806 TCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGTGGCAATCAGGA
444 TCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGCTTGTGGCAATCAGGA
*
10722871 CCAG
509 CCAA
* * * **
10722875 CAGCAGGATCGACAGAATGCAGGGGGGACAGAGCCAATCCTCGGGTTGCGTATTCTGCCTCTCC-
1 CAGCAGGATCGACAGAACGCAGGAGGGACAGAGCCAATCCTCGGCTTGCACATTCTGCCTCTCCG
* * * * *
10722939 AGTCGGTTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 A-CCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
10723004 CTAAGCCCCAGCCCGGTCGAGGGTTGTGGCAGCAGGACC
130 CTAAGCCCCAG-CCGGTCGAGGGTTGTGGCAGCAGGACC
10723043 GACAGCGGGA
Statistics
Matches: 570, Mismatches: 96, Indels: 33
0.82 0.14 0.05
Matches are distributed among these distances:
512 20 0.04
513 161 0.28
514 350 0.61
515 39 0.07
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (512 bp):
CAGCAGGATCGACAGAACGCAGGAGGGACAGAGCCAATCCTCGGCTTGCACATTCTGCCTCTCCG
ACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
TAAGCCCCAGCCGGTCGAGGGTTGTGGCAGCAGGACCTGCAGCACACAAAAAGGGATCGGACCAA
TCCCCGACTCACGCATTATGCCTATCCCGACCGGCTCAGCACCGCACGCTCATTTCATGGGTTGA
CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGAATCGAGGGTTGCGACAGCAAGAT
CAACAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTGA
GCGCCCGCACGCTCATTTTGTGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACA
GAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGCTTGTGGCAATCAGGACCAA
Found at i:10723717 original size:26 final size:26
Alignment explanation
Indices: 10723666--10723718 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
10723656 GTTGGCTTAG
*
10723666 GCATACTAAGTTCATTCCATGTCTAA
1 GCATACTAAGTTCATTCCATGCCTAA
10723692 GCATAC-AGAGTTCATTCC-TAGCCTAA
1 GCATACTA-AGTTCATTCCAT-GCCTAA
10723718 G
1 G
10723719 ATTTTAAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACTAAGTTCATTCCATGCCTAA
Found at i:10723961 original size:26 final size:26
Alignment explanation
Indices: 10723932--10723984 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10723922 GTTGATGTAG
* *
10723932 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
10723958 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
10723984 G
1 G
10723985 GTTAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:10725611 original size:158 final size:157
Alignment explanation
Indices: 10725194--10725622 Score: 368
Period size: 158 Copynumber: 2.7 Consensus size: 157
10725184 GTTTAAGCAT
* * *
10725194 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCC-ATGGTTGGGACAACAAGATCGGCAGCA
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CCGA-GGTTGGG-CAGCAGGATCGGCAGTA
* * * * *
10725258 CGCAGGGGAGATCGGGTCAATCCCCGACTTGCACATTCTGCCTCTCCAGCCGGCTTGAGCGCCCG
63 CGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCAGCCGGCTTCAGCGCCCG
** *
10725323 CACGTCCGTTTCGTGGGTTGGTTTAGGCAT
128 CACGTCCGTTTCGTGGGTTGACTTAGGCAA
* * * ** * * ** *
10725353 AGGGAGTTCATT-CCATGTCT--CACCCTAGCCGAACCGAGGGTTATGGCAGTGGGATCGGTA-T
1 ACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGA-GGTT-GGGCAGCAGGATCGGCAGT
**** * * * * *
10725414 CACGCAGAGGGGGATCAAACCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGC-TCAGTGC
62 -ACGCAG-GGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCAGCCGGCTTCAGCGC
*
10725478 CCGCACG-CTCGTTTCGTGGGTTGACTTATGCAA
125 CCGCACGTC-CGTTTCGTGGGTTGACTTAGGCAA
* *
10725511 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGCGTTGCGGTAGCAGGATCGACAGTAC
1 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG-GTTG-GGCAGCAGGATCGGCAGTAC
* * * *
10725576 GCAGGGGGGATCGGGTCGATCCCTGACTTGTGCATTCTACCTCTCCA
64 GCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCA
10725623 ACCGACAGTG
Statistics
Matches: 202, Mismatches: 55, Indels: 27
0.71 0.19 0.10
Matches are distributed among these distances:
157 6 0.03
158 107 0.53
159 85 0.42
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGTTGGGCAGCAGGATCGGCAGTACGC
AGGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCAGCCGGCTTCAGCGCCCGCAC
GTCCGTTTCGTGGGTTGACTTAGGCAA
Found at i:10732679 original size:26 final size:26
Alignment explanation
Indices: 10732630--10732682 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10732620 GTTGGCTTAG
*
10732630 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
10732656 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
10732682 G
1 G
10732683 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:10732795 original size:185 final size:185
Alignment explanation
Indices: 10732473--10732842 Score: 496
Period size: 185 Copynumber: 2.0 Consensus size: 185
10732463 TGACTTAGGA
* * **
10732473 ATACAGAGTTCATTCCCAGTCTAAGATCGGATAGGATTGAGGATTGCGGCAGCAGGATCGACAGC
1 ATACAGAGTTCATTCCCAGTCTAAGATCGGACAGAACCGAGGATTGCGGCAGCAGGATCGACAGC
* * *
10732538 ATGCAGGGGGGGATCAGGCTGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGGCTGAACGCCC
66 ACGCAGGGGGGGATCAGGCTGATCCCTGACTTGCGCATTCTACCTCGCCGACCGGCTGAACGCCC
* *
10732603 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGC
131 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGC
* * **
10732658 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAAGG-TTGCGGCAGCAGGATCGGTAG
1 ATACAGAGTTCATTCCCAGTCTAAGATCGGACAGAACCG-AGGATTGCGGCAGCAGGATCGACAG
* * * ** * *
10732722 CACGTC-GGGGGGGATC-GGGTCGATCCCTGGCTTTCGCATTCTACCTCGCCGGTCGGTTGAGCG
65 CACG-CAGGGGGGGATCAGGCT-GATCCCTGACTTGCGCATTCTACCTCGCCGACCGGCTGAACG
10732785 CACC-CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGC
128 C-CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGC
10732843 CCCAGCCGAA
Statistics
Matches: 161, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
184 3 0.02
185 152 0.94
186 6 0.04
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (185 bp):
ATACAGAGTTCATTCCCAGTCTAAGATCGGACAGAACCGAGGATTGCGGCAGCAGGATCGACAGC
ACGCAGGGGGGGATCAGGCTGATCCCTGACTTGCGCATTCTACCTCGCCGACCGGCTGAACGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGC
Found at i:10733028 original size:26 final size:26
Alignment explanation
Indices: 10732998--10733050 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10732988 GTTGACTTAG
10732998 GCATAC-GAAGTTCATCCCCAATCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
* *
10733024 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
10733050 G
1 G
10733051 ATCAAATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:10733493 original size:26 final size:26
Alignment explanation
Indices: 10733464--10733519 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
10733454 TGGGTTGACT
*
10733464 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
* *
10733490 TAAGCATACAGAGTTCATTCGCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
10733516 TAAG
1 TAAG
10733520 ATTGGACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:10733687 original size:26 final size:26
Alignment explanation
Indices: 10733651--10733703 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10733641 TTTGGCTTAG
10733651 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
10733677 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
10733703 G
1 G
10733704 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:10734452 original size:26 final size:26
Alignment explanation
Indices: 10734415--10734467 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10734405 GTTGACTTAG
* *
10734415 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
10734441 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
10734467 G
1 G
10734468 ATTAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:10734758 original size:159 final size:158
Alignment explanation
Indices: 10734441--10734873 Score: 435
Period size: 159 Copynumber: 2.7 Consensus size: 158
10734431 CCCATTCTAA
* * ** * * * * *
10734441 GCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTGCTGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCACTCTAAGACCAGATCAGACCGAGGGTTGCGGCAGCAGGACCGACA
* ** * * * * * * * **
10734506 GCACGCAGAGGGGATTGGGCCGATCTCC-AACTTACGCATTCTGCCTCTTCGGTCGGCTGAGTGC
66 GCACGCAGGGGGGACCGAGCCGATC-CCTGACTTGCACATTCTGCCTCTCCGATCGGCTCAACGC
***
10734570 CCGCACGCCCTTTTCGTGGGTTGGCTTAG
130 CCGCACGCCCTTTTCGTGGGTTAAATTAG
* * * * **
10734599 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGTGGGACCGA
1 GCATACGGAGTTCATTCCCA-CTCTAAG-ACCAGATCAGACCGAGGGTTGCGGCAGCAGGACCGA
*
10734662 CAGCACGCAGAGGGGGACCGAGCCGAT-CCTCGACTTGTACATTCTGCCTCTCCGATCGGCTCAA
64 CAGCACGCAG-GGGGGACCGAGCCGATCCCT-GACTTGCACATTCTGCCTCTCCGATCGGCTCAA
*
10734726 CGCCCGCACG-CTTATTTCGTGGGTTAAATTAG
127 CGCCCGCACGCCCT-TTTCGTGGGTTAAATTAG
* * * *
10734758 GCTTACGGAGTTCATTCCCACTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCACTCTAAGACCAGATCAGACCGAGGGTTGCGGCAGCAGGACCGACA
* *
10734823 GCACGTAGGGGGGATCGAGCCGATCCCTGACTTGCACATTCTGCCTCTCCG
66 GCACGCAGGGGGGACCGAGCCGATCCCTGACTTGCACATTCTGCCTCTCCG
10734874 GCCGACTGAC
Statistics
Matches: 223, Mismatches: 43, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
157 5 0.02
158 94 0.42
159 121 0.54
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCACTCTAAGACCAGATCAGACCGAGGGTTGCGGCAGCAGGACCGACA
GCACGCAGGGGGGACCGAGCCGATCCCTGACTTGCACATTCTGCCTCTCCGATCGGCTCAACGCC
CGCACGCCCTTTTCGTGGGTTAAATTAG
Found at i:10735317 original size:26 final size:26
Alignment explanation
Indices: 10735287--10735339 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10735277 GTTGACTTAG
*
10735287 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
10735313 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
10735339 G
1 G
10735340 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:10735604 original size:159 final size:159
Alignment explanation
Indices: 10735388--10735817 Score: 438
Period size: 159 Copynumber: 2.7 Consensus size: 159
10735378 GCATGTGGGT
* * * * * *
10735388 GGGACCGGGCCAATCCCTGGCTTACGCATTCTGCCTCTCCGATCGACCGAGCACCCGCATGCCCG
1 GGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCG-CTGAGCACCCGCATGCTCG
* * **
10735453 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCCGACC-GAGGG
65 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCAG-GGG
* **
10735516 TTGTGGCAACGGGA-CTGGCAGCACGCAGAGG
129 TTGTGGCAACAGGATC-AACAGCACGCAGAGG
* * * * ** *
10735547 GGGACCTGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGGCCAGCTTAGTGCCCGCACGCTCG
1 GGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACC-GCTGAGCACCCGCATGCTCG
* * * *
10735612 TTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACCAAACCAGGGG
65 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCAAACCAGGGG
* *
10735675 TTGTGGCAGCAGGATCAACAGCACGCAGGGG
129 TTGTGGCAACAGGATCAACAGCACGCAGAGG
* ** * * * *
10735706 GGGATCAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACTGGCTGGGCACCCGCATGCTCA
1 GGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGAC-CGCTGAGCACCCGCATGCTCG
** * *
10735771 TTTTTTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTATAAGCA
65 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
10735818 TACGAGTTCA
Statistics
Matches: 218, Mismatches: 45, Indels: 15
0.78 0.16 0.05
Matches are distributed among these distances:
158 3 0.01
159 210 0.96
160 5 0.02
ACGTcount: A:0.19, C:0.30, G:0.29, T:0.23
Consensus pattern (159 bp):
GGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGCTGAGCACCCGCATGCTCGT
TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCAGGGGTT
GTGGCAACAGGATCAACAGCACGCAGAGG
Found at i:10737512 original size:158 final size:158
Alignment explanation
Indices: 10737209--10737698 Score: 416
Period size: 158 Copynumber: 3.1 Consensus size: 158
10737199 CCCCAGTCAA
* ** *
10737209 GCATACGGAGTTCATTCCCAGCCTAAGATC-AGACCGGACCGAGGGTTACGGCAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCCCTAG-CCGGACCGAGGGTTACGGCAGCAGGATCGAC
* *
10737273 AGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTACCTCTTCGACCGACTGAGCAC
65 AGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTTCGACCGACTCAGCAC
* * *
10737338 TCGCACGCCCATTTCGTGGGTTGGCTTAG
130 CCGCACGCCCAATTCGTGGGTTGACTTAG
* * * **
10737367 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAGCCGGACTGAGGGTTATGGCAGTGGGATCGAC
1 GCATACGGAGTTCATTCCCA-GTCTAAGCCCTAGCCGGACCGAGGGTTACGGCAGCAGGATCGAC
* * * * * *
10737431 AGCACGTAGAGGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTTC-AGCTGGCTCAGT
65 AGCACGCAG-GGGGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTTCGA-CCGACTCAGC
* * *
10737495 GCCCGCACG-CTAATTCGTGGGTTGACTTAT
128 ACCCGCACGCCCAATTCGTGGGTTGACTTAG
** * * * * * * * * *
10737525 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGATGGTTGCAGTAGAAGGACCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGCCCTAGCCGGACCGAGGGTTACGGCAGCAGGATCGACA
* * * * * * * * ** * **
10737590 GTACGCAGAGGGG-TCGAGTCGATCCCCGACTTGCGTATTCTGCCTC-TCGACTAACTGAGGGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTTCGACCGACTCAGCACC
* * ** * *
10737653 CACACGCTCGTTTCCTGGGTTGGCTTAG
131 CGCACGCCCAATTCGTGGGTTGACTTAG
*
10737681 GCATATGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
10737699 ATGACTAAGC
Statistics
Matches: 265, Mismatches: 60, Indels: 16
0.78 0.18 0.05
Matches are distributed among these distances:
155 16 0.06
156 59 0.22
157 7 0.03
158 126 0.48
159 57 0.22
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCCCTAGCCGGACCGAGGGTTACGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTTCGACCGACTCAGCACC
CGCACGCCCAATTCGTGGGTTGACTTAG
Found at i:10738101 original size:26 final size:26
Alignment explanation
Indices: 10738072--10738124 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10738062 GTTGACTTAG
10738072 GCATACGAAGTTCA-TCCCAAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
* *
10738098 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10738124 G
1 G
10738125 ATTAGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10738937 original size:26 final size:26
Alignment explanation
Indices: 10738908--10738960 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10738898 GTTGACTTAG
10738908 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
10738934 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
10738960 G
1 G
10738961 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10739418 original size:158 final size:158
Alignment explanation
Indices: 10738934--10739442 Score: 452
Period size: 158 Copynumber: 3.2 Consensus size: 158
10738924 CCCAGTCTAA
* * * * ** * **
10738934 GCATATGGAGTTCATCCCCA-GTCTAAGATCAGACCGGACCAAGGGTTGCAACAACAGGATCGGT
1 GCATACGGAGTTCAT-TCCATGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAATAGGATCGAC
* * * * *
10738998 AGCACGTAGGGGGGACCGGGCCGATCCTCAGGCTTTTGCAAATTCTGACCTCTCCTGGCC-AGCT
65 AGCACGTAGGGGGGACCGGGCTGATCC-CCGACTTCTGC--ATTCTG-CCTCTCC-GACCGA-C-
* * *
10739062 TGAGCCGCCCGCATGCCCTTTTCATGGGTTGGCTTAG
123 TGAG-CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** ** * * * * *
10739099 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TTGGATCGAGTGTTGTGGCAGTGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGATCGAGGGTTGCGGCAATAGGATCGAC
* ** * * * ** * * *
10739163 AGCATGCCGAGGGGGACCGGGCTGATCCCCGACTTGTGCATTATGCCTCTCCAACCGGTTCAACA
65 AGCACGTAG-GGGGGACCGGGCTGATCCCCGACTTCTGCATTCTGCCTCTCCGACCGACTGAGCG
* *
10739228 CCCGAACGCTCGTTTCATGGGTTGACTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
10739258 GCATACGGAGTTCATTCTCA-GTCTAAGATCAGACCGGATCGAGGGTTACGGCAATAGGATCGAC
1 GCATACGGAGTTCATTC-CATGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAATAGGATCGAC
*
10739322 AGCACGTAGGGGGGACCGGGTTGATCCCCGACTTACT-CATTCTGCCTCTCCGACCGACTGAGCG
65 AGCACGTAGGGGGGACCGGGCTGATCCCCGACTT-CTGCATTCTGCCTCTCCGACCGACTGAGCG
* *
10739386 CCCGCACGCTCGTTTCGTGGGTTGGCTGAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
10739416 GCATACAGAGTTTATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
10739443 CATACGGAGT
Statistics
Matches: 269, Mismatches: 67, Indels: 23
0.75 0.19 0.06
Matches are distributed among these distances:
157 2 0.01
158 95 0.35
159 79 0.29
160 4 0.01
161 2 0.01
162 7 0.03
163 5 0.02
164 3 0.01
165 52 0.19
166 20 0.07
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAATAGGATCGACA
GCACGTAGGGGGGACCGGGCTGATCCCCGACTTCTGCATTCTGCCTCTCCGACCGACTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:10739445 original size:26 final size:26
Alignment explanation
Indices: 10739416--10739468 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10739406 GTTGGCTGAG
*
10739416 GCATACAGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
10739442 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10739468 G
1 G
10739469 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10747312 original size:159 final size:158
Alignment explanation
Indices: 10746934--10747429 Score: 385
Period size: 159 Copynumber: 3.1 Consensus size: 158
10746924 TAAGCACACA
* * * * ** * *
10746934 GAGTTCATTCCCA-GTCTAAGA-TTGGACCGGACCAAGGGTTGTGGCAGTAGGATCGACAGCACA
1 GAGTTCATT-CCATGTCTAAGACCTAG-CCGAACCGAGGGTTGCAGCAGCAGGATCGACAGCACG
* * * * ** * * * *
10746997 CA-AGCGGGACCGGGGCCAATCCCCGGCTTGCGCATTTTGCCTTTCTGATCCG-TTGAGCGCCCG
64 CAGAGGGGGACC-GGGCCAAT-CCAGACTTGCGCATTATGCCCCTCCG-GCCGACTCAGCGCCCG
* * *
10747060 TACGCCTGTTTCGTGGGTTGGCTTAGGCATAGG
126 TACGCTTGTTTCATGGGTTGGCTTAGGCATACG
* * * * ** * * * * *
10747093 GAGTTCATTCCATGTCAAAGCCCTAGCTGGACCGAGGGTTGTGGCAGCGGGATTGGCAGCATGTA
1 GAGTTCATTCCATGTCTAAGACCTAGCCGAACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCA
* * *
10747158 GAGGGGGATCGGGCCAATCTTCAG-CTTGCGCATTATGCCCCTCCGGCCGGCTCAGTGCCCGTAC
66 GAGGGGGACCGGGCCAATC--CAGACTTGCGCATTATGCCCCTCCGGCCGACTCAGCGCCCGTAC
*
10747222 GCTTGTTTCATGGGTTGACTTAGGCATACG
129 GCTTGTTTCATGGGTTGGCTTAGGCATACG
* * *
10747252 TAGTTCATTCC-TAGTCTAAGATC-AGACCGAACCGAGGGTTGCAGTAGCAGGATCGACAGCACG
1 GAGTTCATTCCAT-GTCTAAGACCTAG-CCGAACCGAGGGTTGCAGCAGCAGGATCGACAGCACG
* ** * * * * * * * * *
10747315 CAGGGGGGGACCGGGCTGATCCCGACTTGCGCATTCTGCCTCTCCGGTCGATTGAGCACCCGCAT
64 CAGAGGGGGACCGGGCCAATCCAGACTTGCGCATTATGCCCCTCCGGCCGACTCAGCGCCCGTAC
**
10747380 GCTCATTTCATGGGTTGGCTTAGGCATACG
129 GCTTGTTTCATGGGTTGGCTTAGGCATACG
10747410 GAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
10747430 CATACAGAGT
Statistics
Matches: 266, Mismatches: 61, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
157 2 0.01
158 84 0.32
159 169 0.64
160 11 0.04
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GAGTTCATTCCATGTCTAAGACCTAGCCGAACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCA
GAGGGGGACCGGGCCAATCCAGACTTGCGCATTATGCCCCTCCGGCCGACTCAGCGCCCGTACGC
TTGTTTCATGGGTTGGCTTAGGCATACG
Found at i:10747433 original size:26 final size:26
Alignment explanation
Indices: 10747403--10747455 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10747393 GTTGGCTTAG
*
10747403 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
10747429 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10747455 G
1 G
10747456 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10747580 original size:184 final size:184
Alignment explanation
Indices: 10747245--10747614 Score: 525
Period size: 184 Copynumber: 2.0 Consensus size: 184
10747235 GTTGACTTAG
* *
10747245 GCATACGTAGTTCATTCCTAGTCTAAGATCAGACCGAACCGAGGGTTGCAGTAGCAGGATCGACA
1 GCATACGTAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCAGCAGCAGGATCGACA
* * *
10747310 GCACGCAGGGGGGGACCGGGCTGATCCCGACTTGCGCATTCTGCCTCTCCGGTCGATTGAGCACC
66 GCACACAGGGGGGGACCGGGCTGATCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCACC
10747375 CGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
**
10747429 GCATACAG-AGTTCATTCCCAGTCTAAGATCAGACC-AGATTGAGGGTTGCAGCAGCAGGATCGA
1 GCATAC-GTAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCAGCAGCAGGATCGA
* * * *
10747492 CAGCTCACA-GGGTGGACCAGG-TCGATCCTC-AGCTTGCGCATTCTGCCTCTCCGATCGGCTGA
64 CAGCACACAGGGGGGGACCGGGCT-GATCC-CGA-CTTGCGCATTCTGCCTCTCCGATCGACTGA
* * **
10747554 GCACCCGTATGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
126 GCACCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
10747613 GC
1 GC
10747615 CCTAGTCGAA
Statistics
Matches: 166, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
182 1 0.01
183 17 0.10
184 147 0.89
185 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (184 bp):
GCATACGTAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCAGCAGCAGGATCGACA
GCACACAGGGGGGGACCGGGCTGATCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCACC
CGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:10747787 original size:26 final size:26
Alignment explanation
Indices: 10747757--10747809 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10747747 GTTGACTTAG
10747757 GCATAC-GAAGTTCATCCCCAATCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
*
10747783 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
10747809 G
1 G
10747810 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:10750168 original size:26 final size:26
Alignment explanation
Indices: 10750131--10750183 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10750121 GTTGGGTTAG
*
10750131 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
10750157 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10750183 G
1 G
10750184 ATTTTGAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10750879 original size:26 final size:26
Alignment explanation
Indices: 10750843--10750895 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10750833 GTTGACTTAG
*
10750843 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
10750869 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
10750895 G
1 G
10750896 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:10751360 original size:26 final size:26
Alignment explanation
Indices: 10751331--10751383 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10751321 ATTGGCTTAG
*
10751331 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGGTCATTCCCA-GTCTAA
10751357 GCATACGGAGGTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
10751383 G
1 G
10751384 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:10751482 original size:184 final size:183
Alignment explanation
Indices: 10751173--10752080 Score: 676
Period size: 184 Copynumber: 5.0 Consensus size: 183
10751163 GCTCATTTAG
* * * * * *
10751173 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCTGACTGAGAGTTGCGACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCG-CAGCAGGATCGACA
* * * * * * * *
10751238 GCACGTATGGGGGATCGGGCCTATCCCTGGCTTGTGCATTCTACATCTCCG-GTCGGCTGAGTAC
65 GCATGCAGGGGGGATCGGGTCAATCCCTGGCTTGCGCATTCTACCTCT-CGAGTCGGCTGAGTGC
* * * **
10751302 CCGCATGCTCGTTTCGTGCATTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
129 CTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * *
10751357 GCATACGGAGGTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCTGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGC-GCAGCAGGATCGACA
* ** * * * *
10751422 GCATGCAGGGGGTGACCGGGTCGGTCCCTGGCTTACGCATTCTACCTCTCGACT-GGCTGAGCGT
65 GCATGCAGGGGG-GATCGGGTCAATCCCTGGCTTGCGCATTCTACCTCTCGAGTCGGCTGAGTGC
* * * *
10751486 CTACACGCTTATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTGTAA
129 CTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
10751541 GCCTACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCAGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGC-GCAGCAGGATCGACA
* ** * * * **
10751606 ACATGCAGGGGGGATCGGGTCAATCCCCAGCTTGCACATTCTGCCTCTCCAGTCGATTGAGTGCC
65 GCATGCAGGGGGGATCGGGTCAATCCCTGGCTTGCGCATTCTACCTCTCGAGTCGGCTGAGTGCC
* * *
10751671 TGCACACTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTGA
130 TGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
** * * * ** * ** * * *
10751725 GC---CCCAGTTGAAT-CGAGGGT-TGTGGT-AG-CAAGACCGA--------CAGCGGGATCGAT
1 GCATACGGAGTTCATTCCCA--GTCTAAGATCAGACCGGACTGAGGGTTGCGCAGCAGGATCGAC
* * * * * * * *
10751775 AGCATGCAGAGGGGGACCAGG-CTGATCCTTGGCTTGCGTATTATGCCTCTCCGA-TCGGTTGAG
64 AGCATGCAG-GGGGGATCGGGTC-AATCCCTGGCTTGCGCATTCTACCTCT-CGAGTCGGCTGAG
* * * * * *
10751838 TGCCCGCACGCTCGTTTTAG-GGGTTGACTTCGGCATACGGAGTTCATCCCCA-GTCTAA
126 TGCCTGCACGCTC-ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAA
* * * * * *
10751896 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGA-TCGAGGGTTGTGGCAGCAAGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTG-CGCAGCAGGATCGAC
* * * * * * * *
10751960 AGCACGCAGGGGGGATCGAGTCGATCCC-AGCTTGCGCATTCTACCTTTCCG-GCCAGTTGAGTG
64 AGCATGCAGGGGGGATCGGGTCAATCCCTGGCTTGCGCATTCTACCTCT-CGAGTCGGCTGAGTG
* * * *
10752023 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
128 CCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
10752079 GC
1 GC
10752081 CCCAACCGGA
Statistics
Matches: 556, Mismatches: 136, Indels: 65
0.73 0.18 0.09
Matches are distributed among these distances:
170 19 0.03
171 79 0.14
172 9 0.02
173 2 0.00
174 9 0.02
175 3 0.01
176 4 0.01
179 5 0.01
180 4 0.01
181 10 0.02
182 9 0.02
183 100 0.18
184 254 0.46
185 49 0.09
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.25
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGCAGCAGGATCGACAG
CATGCAGGGGGGATCGGGTCAATCCCTGGCTTGCGCATTCTACCTCTCGAGTCGGCTGAGTGCCT
GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:10751906 original size:26 final size:26
Alignment explanation
Indices: 10751870--10751922 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10751860 GTTGACTTCG
10751870 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
10751896 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
10751922 G
1 G
10751923 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10752257 original size:157 final size:157
Alignment explanation
Indices: 10751896--10752263 Score: 393
Period size: 157 Copynumber: 2.3 Consensus size: 157
10751886 CCCAGTCTAA
* * *
10751896 GCATATGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGATCGAGGGTTGTGGCAGCAAGATCGGC
1 GCATACGGAGTTCATTCCCATTCTAAGATCGGACT-GGACCGAGGGTTGTGGCAGCAAGATCGGC
* * * * * * * *
10751960 AGCACGCAGGGGGGATCGAGTCGATCCCAGCTTGCGCATTCTACCTTTCCGGCCAGTTGAGTGCC
65 AGCACGCAGGGGGGAACGACTCGATCCCAGCTTGAGCATTCTACCTCTCCGACCAGCTGAGCGCA
*
10752025 CGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CGCACGCCCATTTCGTGGGTTGGCTTAG
* ** ** * * * *
10752053 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACTGAAGGTTGTGGCAGCGAGA-CAGG
1 GCATACGGAGTTCATTCCCAT-TCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCAAGATC-GG
* ** **
10752116 CAGCACGCAGGGGGGAACAGACT-GATCCCCGCTTGAGCATTCTGGCTCTCCGACTGGCTGAGCG
64 CAGCACGCAGGGGGGAAC-GACTCGATCCCAGCTTGAGCATTCTACCTCTCCGACCAGCTGAGCG
* ** *
10752180 TACGTGCGCTCATTTCGTGGGTTGGCTTAG
128 CACGCACGCCCATTTCGTGGGTTGGCTTAG
*
10752210 GCATACGGAGTTCATTCCCATTCTAAGATCGGACTGGACCGAGGGTTGCGGCAG
1 GCATACGGAGTTCATTCCCATTCTAAGATCGGACTGGACCGAGGGTTGTGGCAG
10752264 TAGGACCTGC
Statistics
Matches: 168, Mismatches: 38, Indels: 10
0.78 0.18 0.05
Matches are distributed among these distances:
156 4 0.02
157 157 0.93
158 7 0.04
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCATTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCAAGATCGGCA
GCACGCAGGGGGGAACGACTCGATCCCAGCTTGAGCATTCTACCTCTCCGACCAGCTGAGCGCAC
GCACGCCCATTTCGTGGGTTGGCTTAG
Found at i:10752755 original size:26 final size:26
Alignment explanation
Indices: 10752726--10752776 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
10752716 TGGCTTAGGC
10752726 ATACGAAGTTCATTC-CATGTCTAAGG
1 ATACGAAGTTCATTCGCA-GTCTAAGG
*
10752752 ATACGGAGTTCATTCGCAGTCTAAG
1 ATACGAAGTTCATTCGCAGTCTAAG
10752777 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCGCAGTCTAAGG
Found at i:10754484 original size:26 final size:26
Alignment explanation
Indices: 10754454--10754506 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10754444 GATGACTTAG
10754454 GCATACG-GAGTTCATTCCCAGTCTAA
1 GCATACGTG-GTTCATTCCCAGTCTAA
10754480 GCATACGTGGTTCATTCCCAGTCTAA
1 GCATACGTGGTTCATTCCCAGTCTAA
10754506 G
1 G
10754507 ATCAGACTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGTGGTTCATTCCCAGTCTAA
Found at i:10754788 original size:159 final size:157
Alignment explanation
Indices: 10754535--10754981 Score: 474
Period size: 155 Copynumber: 2.8 Consensus size: 157
10754525 TTACGATAGT
* * * **
10754535 AGGATCGGCAGCACACAGGGGGGACAGGGCCAATCCCCGACTTGCGTATTCTGCCTCTCCGACAG
1 AGGACCGGCAGCACACAGGGGGGACA-GGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACAG
* *
10754600 GCTAAGCGCCCGCACGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCGATGTCTAA
65 GCTAAGCGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-ATGTCTAA
* * * * *
10754664 GCCTTAG-CTAGGTCGAGGGTTGGGGCAGC
128 GCATCAGACCAGATCGAGGGTTGCGGCAGC
* * * * *
10754693 GGGACCGGCAGCACACAGAGGGGGACCAGGCCGATCCCTGGCTTGCACATTATGCCTCTTCGGTC
1 AGGACCGGCAGCACACAG-GGGGGA-CAGGCCGATCCCCGGCTTGCACATTCTGCCTC-TCCGAC
* * * *
10754758 -GGCTTACCGCCCCCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-A-GTCTAA
63 AGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCATGTCTAA
* *
10754820 G-ATCGGACCAGATCGAGGGTTGCGGTAGC
128 GCATCAGACCAGATCGAGGGTTGCGGCAGC
** * ** * * * * *
10754849 AGGATTGACAGCACGTAGGGGGGATCGGGTCGGTCCCCAGCTTGCACATTCTGCCTCTCCGACGG
1 AGGACCGGCAGCACACAGGGGGGA-CAGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACAG
*
10754914 GCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAAACGGAGTTCATTCCATGTCTAAG
65 GCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CATGTCTAAG
10754979 CAT
129 CAT
10754982 ACGAAGTTCA
Statistics
Matches: 236, Mismatches: 43, Indels: 19
0.79 0.14 0.06
Matches are distributed among these distances:
154 4 0.02
155 84 0.36
156 37 0.16
157 2 0.01
158 23 0.10
159 79 0.33
160 7 0.03
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.22
Consensus pattern (157 bp):
AGGACCGGCAGCACACAGGGGGGACAGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACAGG
CTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCATGTCTAAGCA
TCAGACCAGATCGAGGGTTGCGGCAGC
Found at i:10755332 original size:171 final size:171
Alignment explanation
Indices: 10755012--10755333 Score: 394
Period size: 171 Copynumber: 1.9 Consensus size: 171
10755002 AGATTAGACC
* *
10755012 GGACCGAGGGTTGTGGTAACAGGACCTGCAGCAGGATCGACAGCATACAGAGGGGGACCGGGCCG
1 GGACCGAGGGTTGTGGCAACAGGACCTGCAGCAGGATCGACAGCATACAAAGGGGGACCGGGCCG
* * * * * * *
10755077 ATCCTCGGCTTGCGCATTTTGCCTCTCCAGTCGATTGAGCGCTCACATGCTCGTTTCGTTGGTTG
66 ATACTCGGCTTACGCATTATGCCTCTCCAGCCGATTGAGCACTCACATGCTCGTTTCATGGGTTG
** * *
10755142 GCTTAGTCATACGGAGTTCATTCCATGTCTAAGCCCCAGTT
131 AATTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTT
* * * * * * * *
10755183 GGACTGAGGGTTGTGGCAGCAGGA-TTGACAGCGGGATCGACAGCATGCAAAGGGTGACTGGGCT
1 GGACCGAGGGTTGTGGCAACAGGACCTG-CAGCAGGATCGACAGCATACAAAGGGGGACCGGGCC
* * ** *
10755247 GATACTCGGCTTACGCATTATGCCTCTCCGGCCGGTTGAGCACTCGTATGCTTGTTTCATGGGTT
65 GATACTCGGCTTACGCATTATGCCTCTCCAGCCGATTGAGCACTCACATGCTCGTTTCATGGGTT
10755312 GAATTAGGCATACAGAGTTCAT
130 GAATTAGGCATACAGAGTTCAT
10755334 CCCCAATCTA
Statistics
Matches: 124, Mismatches: 26, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
170 2 0.02
171 122 0.98
ACGTcount: A:0.20, C:0.24, G:0.31, T:0.25
Consensus pattern (171 bp):
GGACCGAGGGTTGTGGCAACAGGACCTGCAGCAGGATCGACAGCATACAAAGGGGGACCGGGCCG
ATACTCGGCTTACGCATTATGCCTCTCCAGCCGATTGAGCACTCACATGCTCGTTTCATGGGTTG
AATTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTT
Found at i:10755821 original size:26 final size:26
Alignment explanation
Indices: 10755791--10755843 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10755781 GTTGGCTTAG
*
10755791 GCATACAGAGTTCATTCCAAGTGTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
** *
10755817 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
10755843 G
1 G
10755844 ATCAGATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:10756196 original size:26 final size:26
Alignment explanation
Indices: 10756158--10756210 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10756148 GTTGACTTAG
10756158 GCATACGGAGTTCA-TCTCTAGTCTAA
1 GCATACGGAGTTCACTCTC-AGTCTAA
*
10756184 GCATACGGTGTTCACTCTCAGTCTAA
1 GCATACGGAGTTCACTCTCAGTCTAA
10756210 G
1 G
10756211 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCACTCTCAGTCTAA
Found at i:10756208 original size:839 final size:835
Alignment explanation
Indices: 10754582--10756248 Score: 1981
Period size: 839 Copynumber: 2.0 Consensus size: 835
10754572 CGACTTGCGT
*
10754582 ATTCTGCCTCTCCGACAGGCTAAGCGCCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGA
1 ATTCTGCCTCTCCGACAGGCTAAGCGCCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGAA
* * * * *
10754647 GTTCATTCGATGTCTAAGCCTTAGCTAGGTCGAGGGTTGGGGCAGCGGGACCGGCAGCACACAGA
66 GTTCATTCCATGTATAAGCCTCAGCTAGGCCGAGGGTTGGGGCAGCGGGACCGACAGCACACAGA
* * *
10754712 GGGGGACCAGGCCGATCCCTGGCTTGCACATTATGCCTCTTCGGTCGGCTTACCGCCCCCACGCT
131 GGGGGACCAGGCCGATCCCTGGCTTGCACATTAAGCATCTTCGGTCGGCTTACAGCCCCCACGCT
* * *
10754777 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTAGTCTAAGATCGGACCAGATCGAGGGTTG
196 CATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTAGTCTAAGATCAGACCAGATCGAGGGTTG
**
10754842 CGGTAGCAGGATTGACAGCACGTAGGGGGGATCGGGTCGGTCCCCAGCTTGCACATTCTGCCTCT
261 CGACAGCAGGATTGACAGCACGTAGGGGGGATCGGGTCGGTCCCCAGCTTGCACATTCTGCCTCT
* * * * * *
10754907 CCGACGGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAAACGGAGTTCATTCCAT
326 CCGACGGACTAAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCAAACAGAGTTCATTCCAA
* * *
10754972 GTCTAAGCATACGAAGTTCATTCTAGTCTAAGATTAGACCGGACCGAGGGTTGTGGTAACAGGAC
391 GTCTAAGCATACGAAGTTCATTCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAACAGGAC
* * * * * * *
10755037 CTGCAGCAGGATCGACAGCATACAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTTTGCCTC
456 CAGCAGCAGGATCGACAGCACACAGAGGGGGACCGGGCCGATCCCCGACTTGCACATTCTACCTC
* * * * * * *
10755102 TCCAGTCGATTGAGCGCTCACATGCTCGTTTCGTTGGTTGGCTTAGTCATACGGAGTTCATTCCA
521 TCCAGCCGACTGAGCGCCCACACGCTCGTTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCA
* * * * ** * *
10755167 TGTCTAAGCCCCAGTTGGACTGAGGGTTGTGGCAGCAGGATTGACAGCGGGATCGACAGCATGCA
586 TGTCTAAGCACCAGTCGAACTGAGGGTTGTGGCAACAGGACCGACAGCGAGATCGACAGCACGCA
* * * * * * * **
10755232 AAGGGTGACTGGGCTGATACTCGGCTTACGCATTATGCCTCTCCGGCCGGTTGAGCACTCGTATG
651 AAGGGGGACAGGACTGATACCCGGCTTACGCATTAAGCCTCTCCGGCCGGCTGAGCACTCGCACA
* * *
10755297 CTTGTTTCATGGGTTGAATTAGGCATACAGAGTTCATCCCCAATCTAAGCAGACAGGGTTCATTC
716 CTCGTTTCAGGGGTTGAATTAGGCATACAGAGTTCATCCCCAATCTAAGCAGACAGGGTTCACTC
*
10755362 CCAGTCTAAGATCGAACCGGACCGAGGGTTACGACAGCAGGATCGACAGCAAGTGC
781 CCAGTCTAAGATCGAACCGGACCGAAGGTTACGACAGCA-GATCGACAGCAAGTGC
* * * * * *
10755418 ATTCTGCCTCTCCGACTGGCTGAGTGTCCGTACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGAA
1 ATTCTGCCTCTCCGACAGGCTAAGCGCCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGAA
* **
10755483 GTTCATTCCATGTATAAGCGC-CAGC-CGGACCGAGGGTTGGGGCAGCGGGATTGACAGCACACA
66 GTTCATTCCATGTATAAGC-CTCAGCTAGG-CCGAGGGTTGGGGCAGCGGGACCGACAGCACACA
* * * ** *
10755546 GTGGGGGACCGGGTCGAT-CCTCGGCTTGCGGATTAAGCATCTTCGGTCGGC-T-CAGCACCGCA
129 GAGGGGGACCAGGCCGATCCCT-GGCTTGCACATTAAGCATCTTCGGTCGGCTTACAGC-CCCCA
* * * * *
10755608 TGCTCATTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCTAGTCTAAGATCATATCGGA-CT
192 CGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCA-T--TAGTCTAAGATCAGACCAGATC-
* * * * *
10755672 GAGGGTTGCGACAGTAGGATTGATAGCATGTAGGGGGTGATTGGGTCGGTCCCCGGCTTGCACAT
253 GAGGGTTGCGACAGCAGGATTGACAGCACGTAGGGGG-GATCGGGTCGGTCCCCAGCTTGCACAT
* ** * * *
10755737 TCTGGCTCTCCGATC-GACTGTGTGCCTGCACGCCCATTTCATGGGTTGGCTTAGGCATACAGAG
317 TCTGCCTCTCCGA-CGGACTAAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCAAACAGAG
* * * ** *
10755801 TTCATTCCAAGTGTAAGCATATGGAGTTCATTCCTAGTCTAAGATCAGATTGGATCGAGGGTTGC
381 TTCATTCCAAGTCTAAGCATACGAAGTTCATT-CTAGTCTAAGATCAGACCGGACCGAGGGTTGC
* ** * *
10755866 GGCAACAGGACCAGCAGTAGGATCGACTA-CACGTAG-GGGGGATCGGGCTGATCCCCGACTTGC
445 GGCAACAGGACCAGCAGCAGGATCGAC-AGCACACAGAGGGGGACCGGGCCGATCCCCGACTTGC
* * *
10755929 ACATTCTACCTCTCC-GACCGGCTGAGTGCCCGCACGCTCGTTTCATAGGTTGGCTTAGGCATAC
509 ACATTCTACCTCTCCAG-CCGACTGAGCGCCCACACGCTCGTTTCATAGGTTGGCTTAGGCATAC
* *
10755993 GGAGTTCATTCCATGTCTAAGCACCAGTCGAACTGAGGGTTGTTGCAATAGGACCGACAGCGAGA
573 GGAGTTCATTCCATGTCTAAGCACCAGTCGAACTGAGGGTTGTGGCAACAGGACCGACAGCGAGA
** * * * * *
10756058 TCGGTAGCACGTAGAGGGGGACAGGACTGATCCCCGGC-TAGCGCATTAAGCCTCTTCGGTCGGC
638 TCGACAGCACGCAAAGGGGGACAGGACTGATACCCGGCTTA-CGCATTAAGCCTCTCCGGCCGGC
** * * * * * *
10756122 TGAGTGCTCGCACACTCGTTTTAGGGGTTGACTTAGGCATACGGAGTTCATCTCTAGTCTAAGCA
702 TGAGCACTCGCACACTCGTTTCAGGGGTTGAATTAGGCATACAGAGTTCATCCCCAATCTAAGCA
* * * * *
10756187 TAC-GGTGTTCACTCTCAGTCTAAGATCGAATCGGACCGAAGGTTGCGGCAGCAGATCGACAG
767 GACAGG-GTTCACTCCCAGTCTAAGATCGAACCGGACCGAAGGTTACGACAGCAGATCGACAG
10756249 GACGCAGGGG
Statistics
Matches: 691, Mismatches: 125, Indels: 28
0.82 0.15 0.03
Matches are distributed among these distances:
834 3 0.00
835 44 0.06
836 149 0.22
837 2 0.00
838 62 0.09
839 374 0.54
840 56 0.08
841 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (835 bp):
ATTCTGCCTCTCCGACAGGCTAAGCGCCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGAA
GTTCATTCCATGTATAAGCCTCAGCTAGGCCGAGGGTTGGGGCAGCGGGACCGACAGCACACAGA
GGGGGACCAGGCCGATCCCTGGCTTGCACATTAAGCATCTTCGGTCGGCTTACAGCCCCCACGCT
CATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTAGTCTAAGATCAGACCAGATCGAGGGTTG
CGACAGCAGGATTGACAGCACGTAGGGGGGATCGGGTCGGTCCCCAGCTTGCACATTCTGCCTCT
CCGACGGACTAAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCAAACAGAGTTCATTCCAA
GTCTAAGCATACGAAGTTCATTCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAACAGGAC
CAGCAGCAGGATCGACAGCACACAGAGGGGGACCGGGCCGATCCCCGACTTGCACATTCTACCTC
TCCAGCCGACTGAGCGCCCACACGCTCGTTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCA
TGTCTAAGCACCAGTCGAACTGAGGGTTGTGGCAACAGGACCGACAGCGAGATCGACAGCACGCA
AAGGGGGACAGGACTGATACCCGGCTTACGCATTAAGCCTCTCCGGCCGGCTGAGCACTCGCACA
CTCGTTTCAGGGGTTGAATTAGGCATACAGAGTTCATCCCCAATCTAAGCAGACAGGGTTCACTC
CCAGTCTAAGATCGAACCGGACCGAAGGTTACGACAGCAGATCGACAGCAAGTGC
Found at i:10756648 original size:26 final size:26
Alignment explanation
Indices: 10756619--10756671 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
10756609 GTTGGCTTAG
*
10756619 GCATACGAAGTTTATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
10756645 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10756671 G
1 G
10756672 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10756879 original size:26 final size:26
Alignment explanation
Indices: 10756828--10756880 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10756818 GTTGACTTAG
* *
10756828 GCATACGGAGTTTATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGCCTAA
10756854 GCATACGGAGTTCATTCCC-AGCCTAA
1 GCATACGGAGTTCA-TCCCTAGCCTAA
10756880 G
1 G
10756881 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGCCTAA
Found at i:10757090 original size:26 final size:26
Alignment explanation
Indices: 10757013--10757080 Score: 136
Period size: 26 Copynumber: 2.6 Consensus size: 26
10757003 TTGGCTTAGC
10757013 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATGTCTAAG
10757039 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATGTCTAAG
10757065 CATACGGAGTTCATTC
1 CATACGGAGTTCATTC
10757081 TTGGTCTAAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATGTCTAAG
Found at i:10757417 original size:158 final size:158
Alignment explanation
Indices: 10757129--10757418 Score: 368
Period size: 158 Copynumber: 1.8 Consensus size: 158
10757119 AGGACCAGCT
* * * * * *
10757129 GTAGGATCGATAGCACGCAGGGGGGATCAGGCCGATCCCCGGCTTGTGCATTATGCCTCATCGAT
1 GTAGGATCGATAGCACACAGGGGGGATCAGGCCGATCCCCGACTTGCGCATTATACCTCATCCAC
* * *
10757194 CGGCTCAGCACCCGCACACTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
66 CGGCTCAGCACCCACACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
10757259 AGATCAGACCAGACCGAGGGTTACGATA
131 AGATCAGACCAGACCGAGGGTTACGATA
* * ** * *
10757287 GTAGGATCGATGGCACATAGGGGGGATTGGGCCGATCCCCGATTTGCGCATTCTACCTC-TCCAG
1 GTAGGATCGATAGCACACAGGGGGGATCAGGCCGATCCCCGACTTGCGCATTATACCTCATCCA-
* * * * *
10757351 CCGGCTGAGCGCCCACACACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTC
65 CCGGCTCAGCACCCACACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTC
10757415 TAAG
129 TAAG
10757419 CATACAGAGT
Statistics
Matches: 110, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
157 6 0.05
158 104 0.95
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (158 bp):
GTAGGATCGATAGCACACAGGGGGGATCAGGCCGATCCCCGACTTGCGCATTATACCTCATCCAC
CGGCTCAGCACCCACACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
AGATCAGACCAGACCGAGGGTTACGATA
Found at i:10757428 original size:26 final size:26
Alignment explanation
Indices: 10757392--10757444 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10757382 GTTGGCTTAG
10757392 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
10757418 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
10757444 G
1 G
10757445 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:10757582 original size:26 final size:26
Alignment explanation
Indices: 10757535--10757587 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10757525 GTTGACTTAG
*
10757535 GCATACAGAGTTCATCCTCAGTTTAA
1 GCATACAGAGTTCATCCTCAGTCTAA
*
10757561 GCATACGGAGTTCATTCC-CAGTCTAA
1 GCATACAGAGTTCA-TCCTCAGTCTAA
10757587 G
1 G
10757588 ATCTAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCTCAGTCTAA
Found at i:10758764 original size:26 final size:26
Alignment explanation
Indices: 10758728--10758780 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10758718 GTTGGCTTAG
10758728 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
10758754 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10758780 G
1 G
10758781 AGTGTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10759983 original size:26 final size:26
Alignment explanation
Indices: 10759953--10760005 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10759943 GTTGGCTTAG
10759953 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
10759979 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
10760005 G
1 G
10760006 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:10760200 original size:26 final size:26
Alignment explanation
Indices: 10760150--10760202 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10760140 GTTGACTTAG
* *
10760150 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCAAATCTAA
*
10760176 GCATACGGAGTTCATTCCAAATCTAA
1 GCATACGGAGTTCATCCCAAATCTAA
10760202 G
1 G
10760203 ATCTAATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAATCTAA
Found at i:10760522 original size:26 final size:26
Alignment explanation
Indices: 10760493--10760545 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
10760483 GTTGGCTTAG
*
10760493 GCATAAAGATTTCATT-CCATGTCTAA
1 GCATAAAGAGTTCATTCCCA-GTCTAA
**
10760519 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAAGAGTTCATTCCCAGTCTAA
10760545 G
1 G
10760546 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATAAAGAGTTCATTCCCAGTCTAA
Found at i:10761242 original size:26 final size:26
Alignment explanation
Indices: 10761213--10761267 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
10761203 GGGTTGACTA
*
10761213 AAGCATACGGAGTTCATCCCCAGTCT
1 AAGCATACAGAGTTCATCCCCAGTCT
*
10761239 AAGCATACAGAGTTCATTCCCAGTCT
1 AAGCATACAGAGTTCATCCCCAGTCT
10761265 AAG
1 AAG
10761268 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (26 bp):
AAGCATACAGAGTTCATCCCCAGTCT
Found at i:10762059 original size:26 final size:26
Alignment explanation
Indices: 10762029--10762110 Score: 110
Period size: 26 Copynumber: 3.2 Consensus size: 26
10762019 TGGGTTGACT
*
10762029 TAAGCATATGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
*
10762055 TAAGCATACGGAGTTCATCCTCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* * * *
10762081 TAAGCATACGAACTTTATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
10762107 TAAG
1 TAAG
10762111 ATTAGATCGG
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:10769552 original size:160 final size:159
Alignment explanation
Indices: 10769271--10769699 Score: 395
Period size: 159 Copynumber: 2.7 Consensus size: 159
10769261 AATGCAAGGA
* * * * * * * ** * *
10769271 GGACCGGGTCAATCCCCGGCGTGCGCATTCTGCCTCTCC-GACAGGCTGAGTGCCCGCACGCCCA
1 GGACCGGGCCAATCCTCGACTTGCGCATTATGCCTCTCCGGCCA-GCTCAGCACCCGCACGCTCG
* * * * *
10769335 TTTCTTGGGTTGGCTTAGGCATAGGGAATTCATT-TTATGTCTAAGCCCCAGCCGGACCAAGGGT
65 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTATGTCTAAGCACCAGCCGGACCAAGGGT
* ** *
10769399 TGT-GGCAGC-GAAACCGGTAGCACGCAGAAGT
130 GGTAGG-AGCAG-AACCGACAGCACGCAG-AGG
* * * *
10769430 GGATCGGGCCGATCCTCGACTTGCGCATTATGCCTCTTCGGCCAGCTCAGCAACTCGCACGCTCG
1 GGACCGGGCCAATCCTCGACTTGCGCATTATGCCTCTCCGGCCAGCTCAGC-ACCCGCACGCTCG
* * * *
10769495 TTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCTA-GTCTAAG-ATCAGACCGGACCGAGGG
65 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTATGTCTAAGCACCAG-CCGGACCAAGGG
* * *
10769558 TGGTAGGAGCAGGATCGACAGCACGCAGGGG
129 TGGTAGGAGCAGAACCGACAGCACGCAGAGG
** * * * * * *
10769589 GGACCGGGGTAATCCTTGGCTTGCGCATTTTGCCTCTCCGGCCAGTTGAGCACCCGCACGCTTGT
1 GGACCGGGCCAATCCTCGACTTGCGCATTATGCCTCTCCGGCCAGCTCAGCACCCGCACGCTCGT
*
10769654 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC-ATGTCTAAGCA
66 TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTATGTCTAAGCA
10769700 TACAGAGTTC
Statistics
Matches: 216, Mismatches: 46, Indels: 16
0.78 0.17 0.06
Matches are distributed among these distances:
157 1 0.00
158 51 0.24
159 82 0.38
160 77 0.36
161 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
GGACCGGGCCAATCCTCGACTTGCGCATTATGCCTCTCCGGCCAGCTCAGCACCCGCACGCTCGT
TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTATGTCTAAGCACCAGCCGGACCAAGGGTG
GTAGGAGCAGAACCGACAGCACGCAGAGG
Found at i:10769707 original size:26 final size:26
Alignment explanation
Indices: 10769671--10769723 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10769661 GTTGGCTTAG
*
10769671 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
10769697 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10769723 G
1 G
10769724 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10771491 original size:159 final size:159
Alignment explanation
Indices: 10771173--10771613 Score: 380
Period size: 159 Copynumber: 2.8 Consensus size: 159
10771163 AGGGTTGCGG
* * * * * *
10771173 CAGCACGCA-AGGGGGACCAGGTCGGTCCCCGATTTGCGTATTCTACCTCTCCGATCGGCT-AAG
1 CAGCAAGCAGAGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTCAA-
* * * * *
10771236 CGCCC--GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
65 CACCCTTGCA--CTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCC
*
10771299 AGCCGGACCGAGGGTTGTGGTAGCCGAACCGA
128 AGCCGGACCGAGGGTTGTGGTAGCAGAACCGA
* * * * *
10771331 CAGCACGTAGAGGGGGACC-GAGTCGATCCCC-AGCTTGTGCATTTTGCCTCTCCGATCGGCTCA
1 CAGCAAGCAGAGGGGGACCAG-GCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGATCGGCTCA
* **
10771394 ACACCCTTGCACTCGTTTCTTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATC
64 ACACCCTTGCACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATT-CCATGTCTAAGCCCC
* * * *
10771457 GGATCGGACCGAGGGTTGTGGCT-GCAGGATCGA
128 AG-CCGGACCGAGGGTTGTGG-TAGCAGAACCGA
* * * *
10771490 CAGCAAGCAGGGGGGGACCAGGCCGGTCCCCGACTTGCGCATTCTGCCTCTCC-AGTCGGATGAG
1 CAGCAAGCAGAGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGA-TCGGCTCA-
* * * * * * *
10771554 CACCCGCACGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
64 -ACAC-C-CTTGCACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCT
10771614 GAGCATATAA
Statistics
Matches: 230, Mismatches: 36, Indels: 29
0.78 0.12 0.10
Matches are distributed among these distances:
158 13 0.06
159 157 0.68
160 8 0.03
161 6 0.03
162 4 0.02
163 42 0.18
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (159 bp):
CAGCAAGCAGAGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTCAAC
ACCCTTGCACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGC
CGGACCGAGGGTTGTGGTAGCAGAACCGA
Found at i:10771992 original size:26 final size:26
Alignment explanation
Indices: 10771956--10772008 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10771946 GTTGACTTAG
10771956 GCATACAGAGTTCA-TCCCCAGTCTAA
1 GCATACAGAGTTCACT-CCCAGTCTAA
10771982 GCATACAGAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
10772008 G
1 G
10772009 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:10772474 original size:158 final size:158
Alignment explanation
Indices: 10771982--10772813 Score: 530
Period size: 159 Copynumber: 5.2 Consensus size: 158
10771972 CCCAGTCTAA
* * * * * * ** * **
10771982 GCATACAGAGTTCACTCCCA-GTCTAAGATCGGATCGGATCGAAGGTTACGATAGCAGGATCGGT
1 GCATACGGAGTTCA-TTCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGAC
* * * * * * *
10772046 AACACGCATGGGGGG-C-CAGGCTGATCCTCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGT
65 AGCACGCA-GGGGGGACTCGGGCTGATCC-CAGCTTACGCATTCTGCCTCTCCGGCCGACTGAGA
* * * * * *
10772109 GCCCACACGCCCATTTCATGGGTTGGCTTTG
128 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
10772140 GCATAGGGAGTTCATTCCATGTCTAA-ACCCCAG-CCAGACCGAGGGTTGTGGCAGTCA-GACCA
1 GCATACGGAGTTCATTCCATGTCTAAGA--TCAGACCGGACCGAGGGTTGTGGTAG-CAGGATC-
* * ** * * * ** **
10772202 GTA-A-CACGCAGAGGGGGAC-CAGG-TCGATCCTCGGCTTGTGCATTATGCCTCTTCAGTGGGT
62 G-ACAGCACGCAG-GGGGGACTCGGGCT-GATCC-CAGCTTACGCATTCTGCCTCTCCGGCCGAC
* * * *
10772263 TCA-ATGCCCGGACGCTCCTTTCGTGGGTTGACTTAT
123 TGAGA-GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
10772299 GCATACGGAGTTCATTCC-TAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGAC
* * *
10772363 AGCACGCAGGGGGGACT-GGGCTGATCCCAGCTTACGCATTCTGCCTCTCCGGTCGACTAAGAGT
65 AGCACGCAGGGGGGACTCGGGCTGATCCCAGCTTACGCATTCTGCCTCTCCGGCCGACTGAGAGC
* *
10772427 CTGCACGCTCGTTTTCGTGGGTT-AGTTTAG
130 CCGCACGCTCG-TTTCGTGGGTTGA-CTTAG
* **
10772457 GCATATGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCTGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGT-G--G-T--A--G-C
* * * * *
10772521 AGCGAGATTGACAGCACGCAGAGAGGGA-TCGGGCTAATCCTCGGCTTACGCATTATGCCTCTCC
56 A--G-GATCGACAGCACGCAG-GGGGGACTCGGGCTGATCC-CAGCTTACGCATTCTGCCTCTCC
* * * * * *
10772585 GACCGACTGAGCGCCCACACCCTCGATTCATGGGTTGACTTAG
116 GGCCGACTGAGAGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
10772628 GCATACGGAGTTCATCCCCA-GTCTAAGATCAGACCGAATCGAGGGTTGCGGTAGCATGATCGAC
1 GCATACGGAGTTCAT-TCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGAC
* * * * ** * * *
10772692 AGTACACAAGGGGGG-CTCGGGCCGGTCCCCAGCTTGTGCATTCTACCTCTCTGGCCGACTGAGT
65 AGCACGC-AGGGGGGACTCGGGCTGAT-CCCAGCTTACGCATTCTGCCTCTCCGGCCGACTGAGA
* *
10772756 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
10772787 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
10772814 CATATGGAGT
Statistics
Matches: 523, Mismatches: 106, Indels: 89
0.73 0.15 0.12
Matches are distributed among these distances:
157 40 0.08
158 126 0.24
159 216 0.41
160 5 0.01
161 1 0.00
162 3 0.01
163 1 0.00
164 1 0.00
165 1 0.00
166 1 0.00
167 3 0.01
168 1 0.00
169 1 0.00
170 20 0.04
171 61 0.12
172 42 0.08
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACA
GCACGCAGGGGGGACTCGGGCTGATCCCAGCTTACGCATTCTGCCTCTCCGGCCGACTGAGAGCC
CGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:10773252 original size:26 final size:26
Alignment explanation
Indices: 10773223--10773275 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10773213 GTTGACTTAG
*
10773223 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
10773249 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
10773275 G
1 G
10773276 ATCAGACAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:10773716 original size:26 final size:26
Alignment explanation
Indices: 10773686--10773738 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10773676 GTTGGCTTAG
*
10773686 GCATACGGATTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCGCA-GTCTAA
10773712 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCGCAGTCTAA
10773738 G
1 G
10773739 ATCGAACTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCGCAGTCTAA
Found at i:10774114 original size:26 final size:27
Alignment explanation
Indices: 10774064--10774117 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
10774054 GTTGACTTAG
*
10774064 GCATACGGAAGTTCATCCCCCGTCTAA
1 GCATACGGAAGTTCATCCCCAGTCTAA
*
10774091 GCATACGG-AGTTCATTCCCAGTCTAA
1 GCATACGGAAGTTCATCCCCAGTCTAA
10774117 G
1 G
10774118 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 17 0.68
27 8 0.32
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (27 bp):
GCATACGGAAGTTCATCCCCAGTCTAA
Found at i:10774456 original size:159 final size:158
Alignment explanation
Indices: 10774091--10774896 Score: 493
Period size: 159 Copynumber: 5.2 Consensus size: 158
10774081 CCCCGTCTAA
* * * * *
10774091 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGTGGCAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGACA
* * * ** * * * *
10774156 GCACGTAGGGGGGATCAGGCTGATCCTTGGCCTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
66 GCACGTAGGAGGAATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAGCGGCTCAACGCC
** * *
10774221 CGCATGCCCGTTTCGTGGGTTGGCTTAG
131 CGCACACCCATTTCGTGGGTTGACTTAG
* ** ** * * *
10774249 GCATAGGGGAGTTCATTCCTTGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGACAGCGGGACCGA
1 GCATA-CGGAGTTCATTCCCAGTCTAAG-ATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGA
* *
10774313 CAGCA-GTTAGAGAGGAATCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCTG-GCAGGCTCA
64 CAGCACG-TAG-GAGGAATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAGC-GGCTCA
* *
10774376 ACGCCCGCACACTCATTTTGTGGGTTGACTTAG
126 ACGCCCGCACACCCATTTCGTGGGTTGACTTAG
* *
10774409 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTG-CAGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGA-CAGCAGGATCGAC
* * *
10774473 AGCACGTAGGCGAGGAA-CGGGTCGATCCCCGGCTTACGCATTCTGCCTCT-C---CGG----AC
65 AGCACGTA-G-GAGGAATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAGCGGCTCAAC
* *
10774529 GCCCG--------TTTCATGGGTTGGCTTAG
128 GCCCGCACACCCATTTCGTGGGTTGACTTAG
* ** ** ** * * *
10774552 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CCGGATTGAGGGTTGTGGTAACGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCGGACCGAGGGTTGTGACAGCAGGATC-G
* * * * * * *
10774615 TAGCATGCA-G-AGGAGGGA-CGGGGTCGATCCCTGGCTTGCGTATTATGCC-CTTTCG-GTCGG
63 -A-CA-GCACGTAGGAGGAATC-AGGCCGATCCCCGGCTTGCGCATTCTGCCTC-TCCGAG-CGG
* * ** * * * *
10774675 CTCAGCGCCCTCAGGCTCGTTTCATGGGTTGACTTAC
122 CTCAACGCCCGCACACCCATTTCGTGGGTTGACTTAG
* * * * * *
10774712 GCATACGGAGTTCATACCCAGTCTAAGATCGGACCGGACCGAGGGCTATGGCTGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGACA
** * * * * ** * * * *
10774777 GCACCCAAGGGGGGATCAGGTCGATCCCCAGCTTGCGCATT-TGCCTCTCTAACCGGTTGAGC-C
66 GCA-CGTAGGAGGAATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAGCGGCTCAACGC
* *
10774840 CCAGCAAACCCATTTCGTGGGTTGGCTTAG
130 CC-GCACACCCATTTCGTGGGTTGACTTAG
10774870 GCATACGGAGTTCATTCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
10774897 CATACGGAGT
Statistics
Matches: 500, Mismatches: 105, Indels: 86
0.72 0.15 0.12
Matches are distributed among these distances:
142 3 0.01
143 63 0.13
144 30 0.06
145 3 0.01
146 3 0.01
147 3 0.01
148 3 0.01
151 7 0.01
152 5 0.01
155 2 0.00
156 4 0.01
157 5 0.01
158 68 0.14
159 159 0.32
160 139 0.28
161 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGACA
GCACGTAGGAGGAATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAGCGGCTCAACGCC
CGCACACCCATTTCGTGGGTTGACTTAG
Found at i:10774773 original size:303 final size:301
Alignment explanation
Indices: 10774226--10774825 Score: 728
Period size: 303 Copynumber: 2.0 Consensus size: 301
10774216 GCGCCCGCAT
* * *
10774226 GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGGAGTTCATTCCTTGTCTAAGCCCCAGTCGGACCG
1 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCG
* *
10774291 AGGGTTGTGACAGCGGGACCGACAGCAGTTAGAGAGGAATCAGGCCGATCCCCGGCTTGCGCATT
66 AGGGTTGTGACAACGGGACCGACAGCAGTCAGAGAGGAATCAGGCCGATCCCCGGCTTGCGCATT
** *
10774356 ATGCCTCTCTGGCAGGCTCAACGCCCGCACACTCATTTTGTGGGTTGACTTAGGCATACGGAGTT
131 ATGCCTCTCTGGCAGGCTCAACGCCCGCACACTCATTTCATGGGTTGACTTACGCATACGGAGTT
* **
10774421 CATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCAGCAGCAGGATCGACAGCA-CGTAGGCG
196 CATACCCAGTCTAAGATCAGACCGGACCGAAGGTTG-AGCAGCAGGATCGACAGCACCCAAGG-G
* *
10774485 AGGAACGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGGAC
259 AGGAACAGGTCGATCCCCAGCTTACGCATT-TGCCTCTCCGGAC
* **
10774529 GCCCGTTTCATGGGTTGGCTTAGGCATA-GGGAGTTCATTCCATGTCTAAGCCCTAGCCGGATTG
1 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCG
** ** * * * * *
10774593 AGGGTTGTGGTAACGGGACCGGTAGCA-TGCAGAGGAGGGA-CGGGGTCGATCCCTGGCTTGCGT
66 AGGGTTGTGACAACGGGACCGACAGCAGT-CAGA-GAGGAATC-AGGCCGATCCCCGGCTTGCGC
* * * ** *
10774656 ATTATGCC-CTTTCGGTC-GGCTCAGCGCCCTCAGGCTCGTTTCATGGGTTGACTTACGCATACG
128 ATTATGCCTCTCT-GG-CAGGCTCAACGCCCGCACACTCATTTCATGGGTTGACTTACGCATACG
* * *
10774719 GAGTTCATACCCAGTCTAAGATCGGACCGGACCGAGGGCTATG-GCTGCAGGATCGACAGCACCC
191 GAGTTCATACCCAGTCTAAGATCAGACCGGACCGAAGG-T-TGAGCAGCAGGATCGACAGCACCC
* * *
10774783 AAGGGGGGATCAGGTCGATCCCCAGCTTGCGCATTTGCCTCTC
254 AAGGGAGGAACAGGTCGATCCCCAGCTTACGCATTTGCCTCTC
10774826 TAACCGGTTG
Statistics
Matches: 252, Mismatches: 37, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
301 1 0.00
302 68 0.27
303 175 0.69
304 6 0.02
305 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (301 bp):
GCCCGTTTCATGGGTTGGCTTAGGCATAGGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCG
AGGGTTGTGACAACGGGACCGACAGCAGTCAGAGAGGAATCAGGCCGATCCCCGGCTTGCGCATT
ATGCCTCTCTGGCAGGCTCAACGCCCGCACACTCATTTCATGGGTTGACTTACGCATACGGAGTT
CATACCCAGTCTAAGATCAGACCGGACCGAAGGTTGAGCAGCAGGATCGACAGCACCCAAGGGAG
GAACAGGTCGATCCCCAGCTTACGCATTTGCCTCTCCGGAC
Found at i:10774906 original size:26 final size:26
Alignment explanation
Indices: 10774870--10774922 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10774860 GTTGGCTTAG
10774870 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10774896 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10774922 G
1 G
10774923 ATCGGTTTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10775221 original size:26 final size:26
Alignment explanation
Indices: 10775184--10775234 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
10775174 GTTGACTTAG
10775184 GCATAGGAAGTTCATCCCCAGTCTAA
1 GCATAGGAAGTTCATCCCCAGTCTAA
*
10775210 GCATACGG-AGTTCATTCCCAGTCTA
1 GCATA-GGAAGTTCATCCCCAGTCTA
10775235 GGATTGGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATAGGAAGTTCATCCCCAGTCTAA
Found at i:10775498 original size:158 final size:156
Alignment explanation
Indices: 10775336--10775870 Score: 470
Period size: 158 Copynumber: 3.4 Consensus size: 156
10775326 ACCGGTTGAG
* * * * * *
10775336 CGCCCGTACGCCCGGTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCAGTCTAAGCCCCAG
1 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCCAG
* * * *
10775400 TCGGACCGAGGGTTGTGGCAATGGGACCGGCAGCATGCAGAAGGGGATCAGGCTGATCTCTGGCT
66 -CGGACTGAGGGTTGTGGCAACGGGACCGGCAGCACGCAGAGGGGGATC-GGCTGATC-CTGGCT
* *
10775465 TGCGCGTTATGCCTCTTCGGTCGGTTGAA
128 TGCGCATTATGCCTCTTCGGTCGGCTGAA
* * * **
10775494 CGCCCACACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
1 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-CCCCA
* * * * * **** * * *
10775559 CCGGATTGAGGGTTGTGACACCAGGATAAACACCACGCAG-GGGGGATCGGGTCGATCCCCGGCT
65 GCGGACTGAGGGTTGTGGCAACGGGACCGGCAGCACGCAGAGGGGGATCGGCT-GAT-CCTGGCT
* * *
10775623 TGCGCATTTTGCCTCTCCGATCGGCT-AA
128 TGCGCATTATGCCTCTTCGGTCGGCTGAA
* * * * *
10775651 GCGCTCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCC
1 -CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCCCC
* * * * * * *
10775715 AGCTAGACTGAGGGTTGTGGCAGCGAGACCGGTAGCAGGTAGAGGGGGACCGGGCCT-ATCCTCG
64 AGC-GGACTGAGGGTTGTGGCAACGGGACCGGCAGCACGCAGAGGGGGATC-GG-CTGATCCT-G
* *
10775779 GCTTGCGCATTATGCCTCTTTGG-CTGGCTCAA
125 GCTTGCGCATTATGCCTCTTCGGTC-GGCTGAA
* * *
10775811 TGCCCGCACACTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
1 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
10775871 ATACGGAGTG
Statistics
Matches: 291, Mismatches: 72, Indels: 27
0.75 0.18 0.07
Matches are distributed among these distances:
157 11 0.04
158 151 0.52
159 119 0.41
160 9 0.03
161 1 0.00
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.24
Consensus pattern (156 bp):
CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCCAG
CGGACTGAGGGTTGTGGCAACGGGACCGGCAGCACGCAGAGGGGGATCGGCTGATCCTGGCTTGC
GCATTATGCCTCTTCGGTCGGCTGAA
Found at i:10775866 original size:317 final size:317
Alignment explanation
Indices: 10775210--10776370 Score: 1141
Period size: 343 Copynumber: 3.6 Consensus size: 317
10775200 CCCAGTCTAA
* * ** ** *
10775210 GCATACGGAGTTCATTCCCAGTCTAGGATTGGATTGGACCGAGGGTTGCGACAGCAAAATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * *
10775275 GCACGTAGGGGGGACCGAGTCGATCCCCGACTTGCGCATTCTCCCTCTCTGACCGGTTGAGCGCC
66 GCACGCAGAGGGGACCGAGTCGATCCCCGACTTGCGCATTCTCCCTCTCCGACCGGCTAAGCGCC
* * * *
10775340 CGTACGCCCGGTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA-GTCTAAGCCCCAG-TCG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-A
** * * * * *
10775403 GACCGAGGGTTGTGGCAATGGGACCGGCAGCATGCAGAAGGGGATCAGGCTGAT-CTCTGGCTTG
195 GACCGAGGGTTGTGGCAGCGAGACCGGCAGCAGGTAGAGGGGGATCGGGCT-ATCCTCTGGCTTG
* * * * * * * *
10775467 CGCGTTATGCCTCTTCGGTCGGTTGAACGCCCACACGCTCGTTTCATGGGTTGACTTAT
259 CGCATTATGCCTCTTTGGTAGGCTCAACGCCCGCACACTCGTTTCATGGGTTGACTTAG
** * * **
10775526 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGTGACACCAGGATAAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * * * * *
10775591 CCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTTTGCCTCTCCGATCGGCTAAGCGCT
66 GCACGCAGAGGGGACCGAGTCGATCCCCGACTTGCGCATTCTCCCTCTCCGACCGGCTAAGCGCC
*
10775656 CGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAG
* * *
10775721 ACTGAGGGTTGTGGCAGCGAGACCGGTAGCAGGTAGAGGGGGACCGGGCCTATCCTC-GGCTTGC
196 ACCGAGGGTTGTGGCAGCGAGACCGGCAGCAGGTAGAGGGGGATCGGG-CTATCCTCTGGCTTGC
* *
10775785 GCATTATGCCTCTTTGGCT-GGCTCAATGCCCGCACACTTGTTTCATGGGTTGACTTAG
260 GCATTATGCCTCTTTGG-TAGGCTCAACGCCCGCACACTCGTTTCATGGGTTGACTTAG
10775843 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTGCATTCCCAGTCTAACATCGGACCGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-----G--------G----AC--CGGA-C----
* * * ** *
10775908 CGAGGGTTGCGGCAACAGGATTGGTAGCACGCAGAGGGGACCGAGCCGATCCCCGACTTGCGCAT
40 CGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGACCGAGTCGATCCCCGACTTGCGCAT
* * * * * * * ** *
10775973 TCTGCCTCTGCAATCGGCTCAA-CACCCGTATGCTCGTTTTATGGGTTGGCTTAGGCATATGGAG
105 TCTCCCTCTCCGACCGGCT-AAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAG
* * *
10776037 TTCATTCCATGTCTAAGCCCCAGCTAGACCGAGGGTTGTGGTAGCGAGACCGACAGTAGGTAGAG
169 TTCATTCCATGTCTAAGCCCCAGCTAGACCGAGGGTTGTGGCAGCGAGACCGGCAGCAGGTAGAG
* * *
10776102 GGGGATCGGGTCGATCC-CTGGCTTGCGCATTATGCCTCTCTGGTAGGCTCAACACCCGCACACT
234 GGGGATCGGG-CTATCCTCTGGCTTGCGCATTATGCCTCTTTGGTAGGCTCAACGCCCGCACACT
*
10776166 CGTTTCGTGGGTTGACTTAG
298 CGTTTCATGGGTTGACTTAG
* * * * *
10776186 GCATACGGAGTTCATTTCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
** * * * * * * *
10776251 GCACATAGAGGGGATCGGGTCGATCCCCGGCTTACGCATTCTCCCTCTCTGGCCGGCTGAGCGCC
66 GCACGCAGAGGGGACCGAGTCGATCCCCGACTTGCGCATTCTCCCTCTCCGACCGGCTAAGCGCC
* ** *
10776316 C-CACGCTCGTTTCGTGGGTTGGCTTAAGCATACAGAGTTCATTCGATGTCTAAGC
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
10776371 ATACGGAGTT
Statistics
Matches: 692, Mismatches: 118, Indels: 70
0.79 0.13 0.08
Matches are distributed among these distances:
316 195 0.28
317 206 0.30
318 9 0.01
319 1 0.00
321 1 0.00
322 3 0.00
324 3 0.00
328 1 0.00
332 1 0.00
336 2 0.00
338 4 0.01
341 1 0.00
342 4 0.01
343 259 0.37
344 2 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGAGGGGACCGAGTCGATCCCCGACTTGCGCATTCTCCCTCTCCGACCGGCTAAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAG
ACCGAGGGTTGTGGCAGCGAGACCGGCAGCAGGTAGAGGGGGATCGGGCTATCCTCTGGCTTGCG
CATTATGCCTCTTTGGTAGGCTCAACGCCCGCACACTCGTTTCATGGGTTGACTTAG
Found at i:10775873 original size:26 final size:26
Alignment explanation
Indices: 10775843--10775901 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
10775833 GTTGACTTAG
*
10775843 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
10775869 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
10775895 -CAT-CGGA
1 GCATACGGA
10775902 CCGGATCGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 4 0.12
25 3 0.09
26 25 0.78
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTGCATTCCCAGTCTAA
Found at i:10776029 original size:659 final size:659
Alignment explanation
Indices: 10775171--10776370 Score: 1593
Period size: 659 Copynumber: 1.8 Consensus size: 659
10775161 GCTCGTTTTG
* *
10775171 TGGGTTGACTTAGGCATAGGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAG
1 TGGGTTGACTTAGGCATAGGAAGTTCATCCCCAGTCTAAGCATACGGAGTGCATTCCCAGTCTAA
* * ** * * * *
10775236 GATTGGATTGGACCGAGGGTTGCGACAGCAAAATCGGCAGCACGTAGGGGGGACCGAGTCGATCC
66 CATCGGACCGGACCGAGGGTTGCGACAACAAAATCGGCAGCACGCAGAGGGGACCGAGCCGATCC
* * * * * *
10775301 CCGACTTGCGCATTCTCCCTCTCTGACCGGTTGAGCGCCCGTACGCCCGGTTCGTGGGTTGGCTT
131 CCGACTTGCGCATTCTCCCTCTCTAACCGGCTCAACACCCGTACGCCCGGTTCATGGGTTGGCTT
* * *
10775366 AGGCATAGGGAGTTCATTCCA-GTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAATGGGACCG
196 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-AGACCGAGGGTTGTGGCAACGAGACCG
* * * * * * *
10775429 GCAGCATGCAGAAGGGGATCAGGCT-GATCTCTGGCTTGCGCGTTATGCCTCT-TCGGTCGGTTG
260 ACAGCAGGCAGAAGGGGATC-GGCTCGATCCCTGGCTTGCGCATTATGCCTCTCT-GGTAGGCTC
* * * * *
10775492 AACGCCCACACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCG
323 AACACCCACACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCA
* ** * * *
10775557 GACCGGATTGAGGGTTGTGACACCAGGATAAACACCACGCAGGGGGGATCGGGTCGATCCCCGGC
388 GACCAGACCGAGGGTTGCGACACCAGGATAAACACCACACAGAGGGGATCGGGTCGATCCCCGGC
* * * * * *
10775622 TTGCGCATTTTGCCTCTCCGATCGGCTAAGCGCTCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCA
453 TTACGCATTCTCCCTCTCCGACCGGCTAAGCGC-CCCAAGCTCGTTTCGTGGGTTGGCTTAAGCA
**
10775687 TAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACTGAGGGTTGTGGCAGCGAGACCGGTAGCA
517 TACAGAGTTCATTCCATGTCTAAGCCCCAGCTAGACTGAGGGTTGTGGCAGCGAGACCGGTAGCA
10775752 GGTAGAGGGGGACCGGGCCTATCCTCGGCTTGCGCATTATGCCTCTTTGGCTGGCTCAATGCCCG
582 GGTAGAGGGGGACCGGGCCTATCCTCGGCTTGCGCATTATGCCTCTTTGGCTGGCTCAATGCCCG
10775817 CACACTTGTTTCA
647 CACACTTGTTTCA
*
10775830 TGGGTTGACTTAGGCATACGG-AGTTCATTCCCAGTCTAAGCATACGGAGTGCATTCCCAGTCTA
1 TGGGTTGACTTAGGCATA-GGAAGTTCATCCCCAGTCTAAGCATACGGAGTGCATTCCCAGTCTA
* * ** * *
10775894 ACATCGGACCGGATCGAGGGTTGCGGCAACAGGATTGGTAGCACGCAGAGGGGACCGAGCCGATC
65 ACATCGGACCGGACCGAGGGTTGCGACAACAAAATCGGCAGCACGCAGAGGGGACCGAGCCGATC
* * * * * *
10775959 CCCGACTTGCGCATTCTGCCTCTGC-AATCGGCTCAACACCCGTATGCTCGTTTTATGGGTTGGC
130 CCCGACTTGCGCATTCTCCCTCT-CTAACCGGCTCAACACCCGTACGCCCGGTTCATGGGTTGGC
* * *
10776023 TTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGAGGGTTGTGGTAGCGAGACC
194 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGAGGGTTGTGGCAACGAGACC
* * * *
10776088 GACAGTAGGTAGAGGGGGATCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCTGGTAGGCTCA
259 GACAGCAGGCAGAAGGGGATCGGCTCGATCCCTGGCTTGCGCATTATGCCTCTCTGGTAGGCTCA
* * *
10776153 ACACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAATCTAAGATCAG
324 ACACCCACACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAG
* * ** * *
10776218 ACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACATAGAGGGGATCGGGTCGATCCCCGGCT
389 ACCAGACCGAGGGTTGCGACACCAGGATAAACACCACACAGAGGGGATCGGGTCGATCCCCGGCT
* * * *
10776283 TACGCATTCTCCCTCTCTGGCCGGCTGAGCGCCCCACGCTCGTTTCGTGGGTTGGCTTAAGCATA
454 TACGCATTCTCCCTCTCCGACCGGCTAAGCGCCCCAAGCTCGTTTCGTGGGTTGGCTTAAGCATA
*
10776348 CAGAGTTCATTCGATGTCTAAGC
519 CAGAGTTCATTCCATGTCTAAGC
10776371 ATACGGAGTT
Statistics
Matches: 456, Mismatches: 79, Indels: 12
0.83 0.14 0.02
Matches are distributed among these distances:
659 234 0.51
660 220 0.48
661 2 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (659 bp):
TGGGTTGACTTAGGCATAGGAAGTTCATCCCCAGTCTAAGCATACGGAGTGCATTCCCAGTCTAA
CATCGGACCGGACCGAGGGTTGCGACAACAAAATCGGCAGCACGCAGAGGGGACCGAGCCGATCC
CCGACTTGCGCATTCTCCCTCTCTAACCGGCTCAACACCCGTACGCCCGGTTCATGGGTTGGCTT
AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGAGGGTTGTGGCAACGAGACCGA
CAGCAGGCAGAAGGGGATCGGCTCGATCCCTGGCTTGCGCATTATGCCTCTCTGGTAGGCTCAAC
ACCCACACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGAC
CAGACCGAGGGTTGCGACACCAGGATAAACACCACACAGAGGGGATCGGGTCGATCCCCGGCTTA
CGCATTCTCCCTCTCCGACCGGCTAAGCGCCCCAAGCTCGTTTCGTGGGTTGGCTTAAGCATACA
GAGTTCATTCCATGTCTAAGCCCCAGCTAGACTGAGGGTTGTGGCAGCGAGACCGGTAGCAGGTA
GAGGGGGACCGGGCCTATCCTCGGCTTGCGCATTATGCCTCTTTGGCTGGCTCAATGCCCGCACA
CTTGTTTCA
Found at i:10776157 original size:159 final size:159
Alignment explanation
Indices: 10775869--10776371 Score: 446
Period size: 159 Copynumber: 3.2 Consensus size: 159
10775859 CCCAGTCTAA
* * * * * * ** *
10775869 GCATACGGAGTGCATTCCCA-GTCTAA-CATCGGACCGGATCGAGGGTTGCGGCAACAGGATTGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGA
* ** * * * * * * * ***
10775932 TAGCACGCAGAGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTGCAATC-GGCTCAAC
65 CAGCACATAGAGGGGATCGGGTCGATCCCCGGCTTACGCATTATCCCTCT-CTGGCAGGCTCAAC
* * **
10775996 ACCCGTATGCTCGTTTTATGGGTTGGCTTAG
129 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
10776027 GCATATGGAGTTCATTCCATGTCTAAGCCCCAG-CTAGACCGAGGGTTGTGGTAGC-GAGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGCAG-GACCGA
* ** * * * *
10776090 CAGTAGGTAGAGGGGGATCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCTGGTAGGCTCAAC
65 CAGCACATAGA-GGGGATCGGGTCGATCCCCGGCTTACGCATTATCCCTCTCTGGCAGGCTCAAC
* *
10776155 ACCCGCACACTCGTTTCGTGGGTTGACTTAG
129 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
10776186 GCATACGGAGTTCATTTCCA-ATCTAAG-ATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGA
1 GCATACGGAGTTCA-TTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGA
* * * * *
10776249 CAGCACATAGAGGGGATCGGGTCGATCCCCGGCTTACGCATTCTCCCTCTCTGGCCGGCTGAGCG
65 CAGCACATAGAGGGGATCGGGTCGATCCCCGGCTTACGCATTATCCCTCTCTGGCAGGCTCAACA
*
10776314 CCC-CACGCTCGTTTCGTGGGTTGGCTTAA
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
10776343 GCATACAGAGTTCATTCGATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
10776372 TACGGAGTTC
Statistics
Matches: 275, Mismatches: 60, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
156 4 0.01
157 46 0.17
158 99 0.36
159 120 0.44
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGAC
AGCACATAGAGGGGATCGGGTCGATCCCCGGCTTACGCATTATCCCTCTCTGGCAGGCTCAACAC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:10776393 original size:26 final size:26
Alignment explanation
Indices: 10776340--10776395 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
10776330 TGGGTTGGCT
* *
10776340 TAAGCATACAGAGTTCATTCGATGTC
1 TAAGCATACAGAGTTCATTCCATATC
*
10776366 TAAGCATACGGAGTTCATTCCCA-ATC
1 TAAGCATACAGAGTTCATT-CCATATC
10776392 TAAG
1 TAAG
10776396 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCATATC
Found at i:10776747 original size:26 final size:26
Alignment explanation
Indices: 10776711--10776763 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10776701 GTTGACTTAG
*
10776711 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
10776737 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10776763 G
1 G
10776764 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10777470 original size:26 final size:26
Alignment explanation
Indices: 10777434--10777486 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10777424 GTATACTTAG
*
10777434 GCATTCAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
10777460 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
10777486 G
1 G
10777487 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:10777785 original size:721 final size:709
Alignment explanation
Indices: 10776154--10777792 Score: 1627
Period size: 710 Copynumber: 2.3 Consensus size: 709
10776144 GTAGGCTCAA
* * * * * * **
10776154 CACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCA-ATCTAAG-ATCA
1 CACCCGCACGCCCGTTTCCTGGGTTGGCTTAGGCATACAGAGTTCA-TTCCATGTCTAAGCCCCA
* * * * * * * ** * **
10776217 GACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACATAGAG-GGGATCGGGTCGATCCCCGG
65 -ACCGGACCAAAGGTTGTGACAACAGGACCGACAGCACGCAGAGAGGGATCGGGCCGATCCCTTG
* * * * ** * * * * * ** *
10776281 CTTACGCATTCTCCCTCTCTGGCCGGCTGAGCGCCC-CACGCTCGTTTCGTGGGTTGGCTTAAGC
129 CTGAAGCATTATGCCTCTCCAGTCGGCTCAGCACCCACATGCTCATTTTATGAGTTGGCTTAAGC
* * *
10776345 ATACAGAGTTCATTCGATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGAACCG
194 ATACGGAGTTCATTCCATGTATAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGAACCG
* * ** *
10776410 AGGGTTGCGACAGCAGGACCAGTAGCAAGATCGGTAGCACGTAGGGGTATACCGAGCCAATCCCC
259 AGGGTTGCGACAGCAGGACCAGCAACAAGATCGACAGCACGTAGGGG-AGACCGAGCCAATCCCC
** * * *
10776475 GACTTGTGCATTCTGCCTCTCCGGCTGACTGAGCACTCGCACGCTCGTTTCATGGGTTGGCTTAG
323 GACTTACGCATTCTACCTCTCCGGCTGACTGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAG
* * * *
10776540 GCATACGGATTTCATTTCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGGCAGCAGGATCGGTA
388 ACATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGGCAGCAGGATCGGAA
* * * * *
10776605 GCGGGATCGACAGCATGTAGAGGGGGACCGGGCTGATCCCCGGGTGGCACATTATGGCTCTCTGG
453 GCGGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTGGCACATTATGCCTCTCCGG
* * *
10776670 CCGACTGAGCACCCGCACGCTCATTTTATGGGTTGACTTAGGCATATGGAGTTCATCCCTAGTCT
518 CCGACTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTCT
* * * *
10776735 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTCGCAGTAGCAGGATCGG
583 AAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTCGCAGCAGCAGGATCGA
* * * * * ** **
10776800 CAGCACGCAGGTGGGACCAAGTCGATCTTCGGCTTGCGCATTTTGCCTCTCCGGTCGGTTGAG
648 CAGCACGCA-GAGGGACCAAGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCGACTGAG
* * ** ** *
10776863 CACCCGTATGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGCCCCAA
1 CACCCGCACGCCCGTTTCCTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAA
* * * * *
10776928 CCGGACCAAAGGTTGTGGCAGCAGGATCGACAGCATGCAGAGGGGGATCGGGCCGATCCCTTGCT
66 CCGGACCAAAGGTTGTGACAACAGGACCGACAGCACGCAGAGAGGGATCGGGCCGATCCCTTGCT
* * * *
10776993 GAAGCATTATGCCTCTCCAGTCGGCTCAGCACCCGCATGCTCGTTTTATGGGTTGGCTTAGGCAT
131 GAAGCATTATGCCTCTCCAGTCGGCTCAGCACCCACATGCTCATTTTATGAGTTGGCTTAAGCAT
* * * *
10777058 ACGGAGTTCATTCCATGTATAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAG
196 ACGGAGTTCATTCCATGTATAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGAACCGAG
* * * * * *
10777123 GGTTGCGACAGCAGGACCAGCAACAGGATCGACAGCATGTAAGGGG-GACCGTGCCGATCCCTGG
261 GGTTGCGACAGCAGGACCAGCAACAAGATCGACAGCACGT-AGGGGAGACCGAGCCAATCCCCGA
* * * *
10777187 CTTACGTATTCTACCTCTCCGG-TCGATTGAGCACCCACACGCTTGTTTCGTGGGTTGGCTTAGA
325 CTTACGCATTCTACCTCTCCGGCT-GACTGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAGA
* * * * ** *
10777251 CATACGGAGTTCATTCCATGTTTAAGCCCTAGCTAGATTGAGGGTTGTGGCAGTAGGA-CTGGAA
389 CATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGGCAGCAGGATC-GGAA
* * * *
10777315 GCGGGATCGGCAGCACGCAGAGGGGGATCGGGCTGATCCCTGGCTGGCGCATTATGCCTCTCCGA
453 GCGGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTGGCACATTATGCCTCT----
* * * * *
10777380 CCGGCCTCTCCGGTCCGTTGAGCGCCCGTATGCT-ACTTTCGTGGGTAT-ACTTAGGCAT-TCAG
514 CCGG-----CC-G-AC--TGAGCACCCGCACGCTCA-TTTCATGGGT-TGACTTAGGCATAT-AG
*
10777442 AGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTT
567 AGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGG-T
* * * ** * *
10777507 ACG-A-CAGCAGGATCGATAGCACGTA-AGGGATCGGGCCGATCCTCGATTTGTGCATTCTGCCT
631 -CGCAGCAGCAGGATCGACAGCACGCAGAGGGACCAAGCCGATCCTCGACTTGCGCATTCTGCCT
*
10777569 CTCCTACCGACTGAG
695 CTCCGACCGACTGAG
* * * *
10777584 CATCTGCACGCTCGTTTCCTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAG
1 CACCCGCACGCCCGTTTCCTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAA
* * * * * * * *
10777649 TCGGACCGAGGGTTGTTACAACGGGACCTACAGCACGCAGAGAGGGATTGGGCTGAT-CCTTGGC
66 CCGGACCAAAGGTTGTGACAACAGGACCGACAGCACGCAGAGAGGGATCGGGCCGATCCCTT-GC
* * * *
10777713 TTGCA-CATTATGCCTCTTC-GATCGGCTCAGCACCCACATGCTCATTTTATGAGTTGACTTATG
130 -TGAAGCATTATGCCTCTCCAG-TCGGCTCAGCACCCACATGCTCATTTTATGAGTTGGCTTAAG
10777776 CATACGGAGTTCATTCC
193 CATACGGAGTTCATTCC
10777793 CAGTCTAAGA
Statistics
Matches: 760, Mismatches: 142, Indels: 44
0.80 0.15 0.05
Matches are distributed among these distances:
708 5 0.01
709 82 0.11
710 216 0.28
711 118 0.16
712 5 0.01
714 3 0.00
719 2 0.00
720 6 0.01
721 205 0.27
722 5 0.01
723 108 0.14
724 3 0.00
725 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (709 bp):
CACCCGCACGCCCGTTTCCTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAA
CCGGACCAAAGGTTGTGACAACAGGACCGACAGCACGCAGAGAGGGATCGGGCCGATCCCTTGCT
GAAGCATTATGCCTCTCCAGTCGGCTCAGCACCCACATGCTCATTTTATGAGTTGGCTTAAGCAT
ACGGAGTTCATTCCATGTATAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGAACCGAG
GGTTGCGACAGCAGGACCAGCAACAAGATCGACAGCACGTAGGGGAGACCGAGCCAATCCCCGAC
TTACGCATTCTACCTCTCCGGCTGACTGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAGACA
TACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGGCAGCAGGATCGGAAGCG
GGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTGGCACATTATGCCTCTCCGGCCG
ACTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTCTAAG
CATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTCGCAGCAGCAGGATCGACAG
CACGCAGAGGGACCAAGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCGACTGAG
Found at i:10777951 original size:158 final size:155
Alignment explanation
Indices: 10777460--10777961 Score: 433
Period size: 159 Copynumber: 3.2 Consensus size: 155
10777450 CCCAGTCTAA
* * * * *
10777460 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTAC-GACAGCAGGATCGAT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAG-CAACAGGATCGAC
* ** * *
10777524 AGCACGTA--AGGGATCGGGCCGATCCTCGATTTGTGCATTCTGCCTCTCCTA-CCGACTGAGCA
65 AGCACGCAGGAGGGATCGGG-CGATCCTCGGCTTGTGCATTATGCCTCT-CTAGCCG-CTGAGCC
* *
10777586 TCTGCACGCTCGTTTCCTGGGTTGGCTTAG
127 TC-GCACGCTCGTTTCATGGGTTGACTTAG
** * * * *
10777616 GCATACAGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTTA-CAACGGGACCT
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTG-CAGCAACAGGATCG
* * ** * * * *
10777678 ACAGCACGCAGAGAGGGATTGGGCTGATCCTTGGCTTGCACATTATGCCTCTTCGATCGGCTCAG
63 ACAGCACGCAG-GAGGGATCGGGC-GATCCTCGGCTTGTGCATTATGCCTC-TCTAGCCGCTGAG
* * * * * * *
10777743 CACCCACATGCTCATTTTATGAGTTGACTTAT
125 C-CTCGCACGCTCGTTTCATGGGTTGACTTAG
* * * *
10777775 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCACCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAGCAACAGGATCGACA
* * *
10777840 GCACGCAGGAGGGATCGGGTCGATCCCCGGCTTGTGGATTTTGCCTCTCTAGCCTGCTGAGCGCT
66 GCACGCAGGAGGGATCGGG-CGATCCTCGGCTTGTGCATTATGCCTCTCTAGCC-GCTGAGC-CT
*
10777905 CGCACGCTCGTTTCATGGGTTGCCTTAG
128 CGCACGCTCGTTTCATGGGTTGACTTAG
* *
10777933 GTATACGGAGTTCATTCCCAGTCTAAGAT
1 GCATACAGAGTTCATTCCCAGTCTAAGAT
10777962 TTTGAGCCAT
Statistics
Matches: 267, Mismatches: 63, Indels: 30
0.74 0.17 0.08
Matches are distributed among these distances:
155 3 0.01
156 51 0.19
157 6 0.02
158 91 0.34
159 109 0.41
160 7 0.03
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (155 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAGCAACAGGATCGACA
GCACGCAGGAGGGATCGGGCGATCCTCGGCTTGTGCATTATGCCTCTCTAGCCGCTGAGCCTCGC
ACGCTCGTTTCATGGGTTGACTTAG
Found at i:10778662 original size:26 final size:26
Alignment explanation
Indices: 10778626--10778678 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10778616 GTTGACTTAG
10778626 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
10778652 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
10778678 G
1 G
10778679 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10779816 original size:26 final size:26
Alignment explanation
Indices: 10779780--10779830 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
10779770 GTTGACTTAG
*
10779780 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
10779806 GCATACAGAGTTCAATCCCAGTCTA
1 GCATACAGAGTTCAATCCCAGTCTA
10779831 GGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:10780120 original size:159 final size:156
Alignment explanation
Indices: 10779919--10780292 Score: 396
Period size: 159 Copynumber: 2.4 Consensus size: 156
10779909 GCCGGCTGAG
* * *
10779919 CGCCCGTACGCACGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA-ACCCCA
1 CGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCCA
* * * * *
10779983 GCTAGATCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGGGCT-ATTCCTCGA
66 GC-AGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGA-GAGGA-CGGACTGA-TCC-CGA
10780047 CTTGTGA-ATTATGCCTCTCCGACAGGCTCAA
126 CTTGT-ACATTATGCCTCTCCGACAGGCTCAA
* * * * ****
10780078 CGCCCGTACGCTTGTTTCATGGGTTGACTTAGGCGTACGGAGTTCATTCCCA-ATCTAAGATTGG
1 CGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCCC
* * * *
10780142 ATCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCATGCAGAGAGGACTGACTGATCCCGACTTG
65 AGCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGAGGACGGACTGATCCCGACTTG
* * * *
10780207 TACATTCTGCCTCTCCGACCGGCTGAG
130 TACATTATGCCTCTCCGACAGGCTCAA
* * * * *
10780234 CGTCGGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
10780293 CGTACGGAGT
Statistics
Matches: 177, Mismatches: 33, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
155 4 0.02
156 74 0.42
157 7 0.04
158 5 0.03
159 81 0.46
160 6 0.03
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.25
Consensus pattern (156 bp):
CGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCCA
GCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGAGGACGGACTGATCCCGACTTGT
ACATTATGCCTCTCCGACAGGCTCAA
Found at i:10780299 original size:26 final size:26
Alignment explanation
Indices: 10780269--10780318 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
10780259 GGCTTAGGCA
10780269 TACGGAGTTCATT-CCATGTCTAAGCG
1 TACGGAGTTCATTCCCA-GTCTAAGCG
10780295 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
10780319 ATCAAACCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:10782361 original size:26 final size:26
Alignment explanation
Indices: 10782325--10782377 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10782315 GTTAGCTTAG
*
10782325 GCATACTGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
10782351 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10782377 G
1 G
10782378 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10782823 original size:158 final size:159
Alignment explanation
Indices: 10782481--10782845 Score: 391
Period size: 158 Copynumber: 2.3 Consensus size: 159
10782471 GCTGAGTGCC
* *
10782481 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACTGGACCTAAG
1 CATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCA-GTCTAAGCCCCAACTGGACCTAAG
* * * *
10782545 GTTGTGGCAGCGGGACTGACAGCACACAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATG
65 GTTGTGGCAGCAGGACTGACAGCACACAGAGGGGGATCAGGCCGATCCTCGGCTCGCGCATTATC
* * * * *
10782610 CCTCTTTGGTCGGCTCAGTGCCCGAACGCT
130 CCCCTCTGGCCGGCTAAGCGCCCGAACGCT
** * ** **
10782640 TGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGA-TCGGACC-AAG
1 CATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGCCCCAACT-GGACCTAA-
** * *
10782703 GGTTGTGGCAGCAGGA-TCGACAGCATGCAG-GGGGGGTCAGGCCGATCC-CTGGCTCGTGCATT
64 GGTTGTGGCAGCAGGACT-GACAGCACACAGAGGGGGATCAGGCCGATCCTC-GGCTCGCGCATT
* *
10782765 CTCCCCCTCTGGCCGGCTAAGCGCCCGCACGCT
127 ATCCCCCTCTGGCCGGCTAAGCGCCCGAACGCT
* * **
10782798 CATTTTGTGGGTTGGCTTAGGCATACGCAGTTCATTCCTTGTCTAAGC
1 CATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGC
10782846 ATATGGAGTT
Statistics
Matches: 169, Mismatches: 32, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
157 1 0.01
158 95 0.56
159 70 0.41
160 3 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.25
Consensus pattern (159 bp):
CATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGCCCCAACTGGACCTAAGG
TTGTGGCAGCAGGACTGACAGCACACAGAGGGGGATCAGGCCGATCCTCGGCTCGCGCATTATCC
CCCTCTGGCCGGCTAAGCGCCCGAACGCT
Found at i:10782847 original size:26 final size:26
Alignment explanation
Indices: 10782818--10782870 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10782808 GTTGGCTTAG
*
10782818 GCATACGCAGTTCATTCCTTGTCTAA
1 GCATACGCAGTTCATTCCTAGTCTAA
* *
10782844 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGCAGTTCATTCCTAGTCTAA
10782870 G
1 G
10782871 AGTTTTAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCTAGTCTAA
Done.