Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 61 of 402
Found at i:10783576 original size:26 final size:26
Alignment explanation
Indices: 10783540--10783592 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10783530 GTTGACTTAG
10783540 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
10783566 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
10783592 G
1 G
10783593 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10783859 original size:159 final size:159
Alignment explanation
Indices: 10783684--10784069 Score: 424
Period size: 158 Copynumber: 2.4 Consensus size: 159
10783674 CCTTTCCAAC
* * *
10783684 CGGCTGAGCGCTCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * * ** * * * *
10783749 AGCCCCAG-CCAGACCA-AGGGTTGTGGCAGCGGGA-CTGGCAGCACGCAGAGGGGGATCGGGTC
66 AGCACCAGACCAGA-CAGAGGGTTGGGGCAGCAGGATC-AACAGCACGCAG-GAGGGACCAGGCC
*
10783811 GATCCCCGGCTTAG-GCATTATGCCTCTACGGT
128 GATCCCCGGCTT-GTACATTATGCCTCTACGGT
* * * * *
10783843 CGGCTCAGCGCCCGCACACTCGTTTCGTGGGGTGACTTAGGCATACAGAGTTCATTCCCA-GTCT
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCT
* ** * *
10783907 AAG-ATCAGACTGGACAGAGGGTTGGGGCAGTAGGATCAACAGCACGTAGGAGGGACCAGGCCGA
65 AAGCACCAGACCAGACAGAGGGTTGGGGCAGCAGGATCAACAGCACGCAGGAGGGACCAGGCCGA
* *
10783971 TCCTCGGCTTGTACATTTTGCCTCTACGGT
130 TCCCCGGCTTGTACATTATGCCTCTACGGT
* * * *
10784001 CGGCTGAGTGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
10784066 AGCA
66 AGCA
10784070 TACGAAGTTC
Statistics
Matches: 186, Mismatches: 34, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.02
158 95 0.51
159 83 0.45
160 4 0.02
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (159 bp):
CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
AGCACCAGACCAGACAGAGGGTTGGGGCAGCAGGATCAACAGCACGCAGGAGGGACCAGGCCGAT
CCCCGGCTTGTACATTATGCCTCTACGGT
Found at i:10784249 original size:185 final size:184
Alignment explanation
Indices: 10783883--10784253 Score: 444
Period size: 185 Copynumber: 2.0 Consensus size: 184
10783873 GGTGACTTAG
*
10783883 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACAGAGGGTTGGGGCAGTAGGATCAACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACAGAGGGTTGCGGCAGTAGGATCAACA
** * * * * **
10783948 GCACGTAGGAGGGACCAGGCCGATCCTCGGCTTGTACATTTTGCCTCTACGGTCGGCTGAGTGCC
66 GCACACAGGAGGGACCAGGCCGATCCTCGGCTTGCACATTCTGCCTCTACGGCCGACTGAGCACC
* * *
10784013 CGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
131 CGAACGCTCGTTTCACGGGTTAGCTTAGGCATACGAAGTTAATTCCATGTCTAA
* ** * * *
10784067 GCATAC-GAAGTTCATTCCCAGTGTAAGATTGGATTGGACCGAGGGTTGCGGCAGTAGGATCGAC
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCAGACTGGACAGAGGGTTGCGGCAGTAGGATCAAC
* * *
10784131 AGCACACAGGGGCGGATCAGGCCGATCC-CTGGCTTGCGCATTCTGCCTCT-CTGGCCGACTGAG
65 AGCACACAGGAG-GGACCAGGCCGATCCTC-GGCTTGCACATTCTGCCTCTAC-GGCCGACTGAG
* * * *
10784194 CACTCGCACGCTTGTTTCGCGGGTTAGCTTAGGCATAC-AGAGTTAATTCCATGTCTAA
127 CACCCGAACGCTCGTTTCACGGGTTAGCTTAGGCATACGA-AGTTAATTCCATGTCTAA
10784252 GC
1 GC
10784254 CCCAACCGGA
Statistics
Matches: 157, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
183 1 0.01
184 67 0.43
185 89 0.57
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACAGAGGGTTGCGGCAGTAGGATCAACA
GCACACAGGAGGGACCAGGCCGATCCTCGGCTTGCACATTCTGCCTCTACGGCCGACTGAGCACC
CGAACGCTCGTTTCACGGGTTAGCTTAGGCATACGAAGTTAATTCCATGTCTAA
Found at i:10784440 original size:26 final size:26
Alignment explanation
Indices: 10784410--10784460 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
10784400 GTTGATTTAG
10784410 GTATACGAAGTTCATCCCCAGTCTAT
1 GTATACGAAGTTCATCCCCAGTCTAT
* *
10784436 GTATACGGAGTTCATTCCCAGTCTA
1 GTATACGAAGTTCATCCCCAGTCTA
10784461 AGATCAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (26 bp):
GTATACGAAGTTCATCCCCAGTCTAT
Found at i:10784782 original size:26 final size:26
Alignment explanation
Indices: 10784753--10784805 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10784743 GTTGGCTTAG
10784753 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
10784779 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10784805 G
1 G
10784806 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10785526 original size:26 final size:26
Alignment explanation
Indices: 10785476--10785528 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10785466 GTTGACTTAG
* *
10785476 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
10785502 GCATACAGAGTTCATTCCTAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
10785528 G
1 G
10785529 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:10785690 original size:26 final size:26
Alignment explanation
Indices: 10785660--10785712 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10785650 GTTGCCTTAG
* *
10785660 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
10785686 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10785712 G
1 G
10785713 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10785905 original size:26 final size:26
Alignment explanation
Indices: 10785869--10785921 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10785859 GTTGACTTAG
*
10785869 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
10785895 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
10785921 G
1 G
10785922 ATCTAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10787458 original size:26 final size:26
Alignment explanation
Indices: 10787409--10787461 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10787399 GTTGGCTTAG
*
10787409 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
10787435 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
10787461 G
1 G
10787462 AGTTTGATCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:10787552 original size:11 final size:11
Alignment explanation
Indices: 10787538--10787562 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
10787528 ACCATCGCCA
10787538 GAGCATCGTCG
1 GAGCATCGTCG
10787549 GAGCATCGTCG
1 GAGCATCGTCG
10787560 GAG
1 GAG
10787563 AGCCTAACAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.24, G:0.40, T:0.16
Consensus pattern (11 bp):
GAGCATCGTCG
Found at i:10788462 original size:159 final size:158
Alignment explanation
Indices: 10788256--10788953 Score: 556
Period size: 159 Copynumber: 4.4 Consensus size: 158
10788246 CGGCCGACTG
** * ** *
10788256 AGCACCCGCATGCTTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
1 AGCACCCGCACACTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCA-GTCTAAGCACC
* * * * * * *
10788321 AG-TCGGACCGAGGGTTGTGGCAACGGGACCGATAGCAAGAAGAGGGGGATCGAGTCGATCCCC-
65 AGACCGAACCGAGGGTTGTGGCAGCAGGATCGACAGCACGAAGAGGGGGATCGAGTCGATCCCCA
*
10788384 GACTTGCGCATTATGCCTCTACGGTTGGCTT
130 G-CTTGCGCATTATGCCTCT-CGGTCGGCTT
* *
10788415 AGCACCCGAACACTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCGCAGTCTAAG-ATC
1 AGCACCCGCACACTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC-CAGTCTAAGCACC
* * * * ** * *
10788479 GGACCGAACTGAGGGATGCGGCAGCAGGATCGACAGCACGCTG-GGGGGACCGAGTCGATCCTCA
65 AGACCGAACCGAGGGTTGTGGCAGCAGGATCGACAGCACGAAGAGGGGGATCGAGTCGATCCCCA
* * * * *
10788543 GCTTGCGCATTCTGCCTCTCCGACCGATT
130 GCTTGCGCATTATGCCTCTCGGTCGGCTT
* * * **
10788572 GAGCATCCG--CACGTGCCTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
1 -AGCACCCGCACACTTG--TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCA-GTCTAAGC
* * * * * *
10788635 CCCAG-CAGGATCGAGGGTTGTGGCAGC-GAGATCGACAGCACGCAA-AGTGGGA-CTGGGTCGA
62 ACCAGACCGAACCGAGGGTTGTGGCAGCAG-GATCGACAGCACG-AAGAGGGGGATC-GAGTCGA
* * * *
10788696 TCCCCAGCTTGCACATTATGCCTTTTTGG-CTGGCTC
124 TCCCCAGCTTGCGCATTATGCC-TCTCGGTC-GGCTT
* * * * * *
10788732 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACATAGTTCGTTCCCAGTCTAAG-ATC
1 AGCACCCGCACACTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT-CCAGTCTAAGCACC
* * * * *
10788796 AGACCAAACCAAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGGATCGAGTCGATCCCCG
65 AGACCGAACCGAGGGTTGTGGCAGCAGGATCGACAGCACGAAGAGGGGGATCGAGTCGATCCCCA
** * * * * * *
10788861 GCTTATGGATTCTGCTTCTCCGATCGACTA
130 GCTTGCGCATTATGCCTCT-CGGTCGGCTT
* * * * *
10788891 AGCGCCCGCACTCTCGTTTCGTGGGTTGACTTAGGCATGCAGAGTTCATCCCCAGTCTAAGCA
1 AGCACCCGCACACTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT-TCCAGTCTAAGCA
10788954 TACAGAGTTC
Statistics
Matches: 418, Mismatches: 96, Indels: 49
0.74 0.17 0.09
Matches are distributed among these distances:
156 5 0.01
157 8 0.02
158 119 0.28
159 269 0.64
160 14 0.03
161 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
AGCACCCGCACACTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCAGTCTAAGCACCA
GACCGAACCGAGGGTTGTGGCAGCAGGATCGACAGCACGAAGAGGGGGATCGAGTCGATCCCCAG
CTTGCGCATTATGCCTCTCGGTCGGCTT
Found at i:10788697 original size:317 final size:313
Alignment explanation
Indices: 10788121--10788928 Score: 960
Period size: 317 Copynumber: 2.6 Consensus size: 313
10788111 CGTCCGCACG
* *
10788121 CTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGATCGGACCGAACCGAG
1 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAG
** * * * *
10788186 GGTTGCGATAGCAAGATCGACAGCACGCAGGGGGGATCG-GGCCATCCC-C--GG-TT-AG-CTC
66 GGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCGAGTCGATCCCGCTTGGATTCTGCCTC
* *
10788244 TCCGGCCGACTGAGCACCCGCA-TGCTTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC
131 TCCGACCGACTGAGCACCCGCACTGC-TCTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC
* *
10788308 ATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAACGGGACCGATAGCAAGAAGAGGGGGATCG
195 ATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAACGAGACCGACAGCAAGAAGAGGGGGATCG
* * *
10788373 AGTCGATCCCC-GACTTGCGCATTATGCCTCTACGGTTGGCTTAGCACCCGAACA
260 AGTCGATCCCCAG-CTTGCACATTATGCCTCTACGGCTGGCTCAGCACCCGAACA
* * *
10788427 CTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCGCAGTCTAAGATCGGACCGAACTGAG
1 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAG
* * *
10788492 GGATGCGGCAGCAGGATCGACAGCACGCTGGGGGGACCGAGTCGATCCTCAGCTTGCGCATTCTG
66 GGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCGAGTCGATCC-C-GCTTG-G-ATTCTG
* *
10788557 CCTCTCCGACCGATTGAGCATCCGCACGTGC-CTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
127 CCTCTCCGACCGACTGAGCACCCGCAC-TGCTCTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
* * * * *
10788621 TTCCATGTCTAAGCCCCAG-CAGGATCGAGGGTTGTGGCAGCGAGATCGACAGCACGCAA-AGTG
191 TTCCATGTCTAAGCCCCAGTC-GGACCGAGGGTTGTGGCAACGAGACCGACAGCAAG-AAGAGGG
* * ** * *
10788684 GGA-CTGGGTCGATCCCCAGCTTGCACATTATGCCTTTTTGGCTGGCTCAGCACCCGCACG
254 GGATC-GAGTCGATCCCCAGCTTGCACATTATGCCTCTACGGCTGGCTCAGCACCCGAACA
* * * * * *
10788744 CTCGTTTCGTGGGTTGACTTATGCATACATAGTTCGTTCCCAGTCTAAGATCAGACCAAACCAAG
1 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAG
*
10788809 GGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGGATCGAGTCGATCCCCGGCTTATGGATTCT
66 GGTTGCGGCAGCAGGATCGACAGCACGCA-GGGGGGATCGAGTCGAT-CCC-GC-T-TGGATTCT
* * * * *
10788874 GCTTCTCCGATCGACTAAGCGCCCGCACT-CTCGTTTCGTGGGTTGACTTAGGCAT
126 GCCTCTCCGACCGACTGAGCACCCGCACTGCTC-TTTCGTGGGTTGGCTTAGGCAT
10788929 GCAGAGTTCA
Statistics
Matches: 424, Mismatches: 55, Indels: 34
0.83 0.11 0.07
Matches are distributed among these distances:
306 93 0.22
307 6 0.01
308 1 0.00
310 1 0.00
312 1 0.00
313 1 0.00
315 2 0.00
316 4 0.01
317 236 0.56
318 70 0.17
319 7 0.02
320 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (313 bp):
CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAG
GGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCGAGTCGATCCCGCTTGGATTCTGCCTC
TCCGACCGACTGAGCACCCGCACTGCTCTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
TGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAACGAGACCGACAGCAAGAAGAGGGGGATCGA
GTCGATCCCCAGCTTGCACATTATGCCTCTACGGCTGGCTCAGCACCCGAACA
Found at i:10788961 original size:26 final size:26
Alignment explanation
Indices: 10788925--10788977 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10788915 GTTGACTTAG
*
10788925 GCATGCAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
10788951 GCATACAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
10788977 G
1 G
10788978 ACTGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:10789462 original size:26 final size:26
Alignment explanation
Indices: 10789425--10789477 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10789415 GTTAACTTAG
*
10789425 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
10789451 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
10789477 G
1 G
10789478 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:10789607 original size:500 final size:496
Alignment explanation
Indices: 10788449--10789884 Score: 1597
Period size: 500 Copynumber: 2.9 Consensus size: 496
10788439 GTTGACTTAG
* *
10788449 GCATACAGAGTTCATTCGC-AGTCTAAGATCGGACCGAACTGAGGGATGCGGCAGCAGGATCGAC
1 GCATACAGAGTTCATTC-CTAGTCTAAGATCGGACCGAACTGAGGGTTGCGGCAGTAGGATCGAC
* * * * * *
10788513 AGCACGCTGGGGGGACCGAGTCGATCCTCAGCTTGCGCATTCTGCCTCTCCGACCGATTGAGCAT
65 AGCACGCAGGGGGGATCGAGTCGATCC-CGGCTTGCGCATTCTGCCTCTTCGGCCGATTGAGCAC
* *
10788578 CCGCACGTGCCTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAG
129 CCGCA--TGCCTTTCGTGGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTG
* * * * * *
10788643 GATCGAGGGTTGTGGCAGCGAGATCGACAGCACGCAAAGTGGGA-CTGGG-TCGATCCCCAGCTT
192 GACCGAGGGTTGTGGCAGTGGGA-CGACAGCACGCAGAGGGGGATC-GGGCT-GATCCCCGGCTT
* * * * * *
10788706 GCA-CATTATGCCTTTTTG-GCTGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCA
254 -AAGCATTATGCCTCTTCGATC-GGCTCATCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCA
* * * ** * *
10788769 TACATAGTTCGTTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGTGGCAGCAGGATCGACAGCA
317 TACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAGCAGGATCGACAGCA
* * * * * *
10788834 CGCAGGGGGGGATCGAGTCGATCCCCGGCTTATGGATTCTGCTTCTCCGATCGACTAAGCGCCCG
382 CGCA-GGGGGGATCGGGT-GATCCCCGGCCTATGCATTCTGCCTCTCCGACCAACTAAGCGCCCG
* * *
10788899 CACTCTCGTTTCGTGGGTTGACTTAGGCATGCAGAGTTCATCCCCAGTCTAA
445 CACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATCCCCAGTCTAA
* *
10788951 GCATACAGAGTTCATTCCCT-GTCTAAGA-CTGGACCGAACTGAGGGTTACGGCAGTAGGATCGG
1 GCATACAGAGTTCATT-CCTAGTCTAAGATC-GGACCGAACTGAGGGTTGCGGCAGTAGGATCGA
** * * *
10789014 CAAAACGCAGGGGGGAAT-GAGCCGATCCCCGGCTTGCGCATTCTGTCTC-TCTGGTCGATTGAG
64 CAGCACGCAGGGGGG-ATCGAGTCGAT-CCCGGCTTGCGCATTCTGCCTCTTC-GGCCGATTGAG
** * * * * *
10789077 GGCCTGCACGCCCATTTCATGGGTTGGCTTAACCATAGGGAGTTCATTCCATGTCTATGCCCCAG
126 CACCCGCATG-CC-TTTCGTGGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
*
10789142 CTGGACCGAGGGTTGTGGCAGTGGGACAGACAGCACGTAGAGGGGGATCGGGCTGATCCCCGGCT
189 CTGGACCGAGGGTTGTGGCAGTGGGAC-GACAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCT
* * *
10789207 TAAGCATTATGCCTCTTCGATCGGCTCATCGCCCGCATGCTCGTTTTGTGGATTGACTTATGCAT
253 TAAGCATTATGCCTCTTCGATCGGCTCATCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCAT
* * * * *
10789272 ACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTATAGCAGGAAGATCGACAGCAC
318 ACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAGCAGGATCGACAGCAC
* ** *
10789337 GCA-GGGGGATCGGGCTGATCCCCGGCCTGTGCATTCTGCCTCTCTTACCAAC-AGAGTGCCCGC
383 GCAGGGGGGATCGGG-TGATCCCCGGCCTATGCATTCTGCCTCTCCGACCAACTA-AGCGCCCGC
* *
10789400 ACGCTCGTTTCGTGTGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAA
446 ACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATCCCCAGTCTAA
* * *
10789451 GCATAC-GAAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGTAGGATCGAC
1 GCATACAG-AGTTCATTCCTAGTCTAAGATCGGACCGAACTGAGGGTTGCGGCAGTAGGATCGAC
* * * * ** *
10789515 AGCACGCAGGGGAGATCGGGTCGATCCCGGGCTTGTGCTTTCTGCCTCTTCGGCCGGCTAAGCAC
65 AGCACGCAGGGGGGATCGAGTCGATCCC-GGCTTGCGCATTCTGCCTCTTCGGCCGATTGAGCAC
* *
10789580 CCGCATGCCTGTTTCGTGGGTTGGCTTAGTCACAGGGAGTTCATTCCATGTCTAAGCCCCAG-TC
129 CCGCATGCC--TTTCGTGGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-
* * * * * * * *
10789644 GGACCGAGTGTTGTGGCAGTGGGACCGGCAGCATGCAGTGGGGGATCGGACGGATCCTCGGCTTG
191 GGACCGAGGGTTGTGGCAGTGGGA-CGACAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTA
* * * *
10789709 CGCATTATGACTCTTCGATCGGCTCAGT-GCCCGTACGCTCATTTCGTGGGTTGACTT-TGGCAT
255 AGCATTATGCCTCTTCGATCGGCTCA-TCGCCCGCACGCTCGTTTCGTGGGTTGACTTAT-GCAT
* * * *
10789772 ACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGAGTTACGGCAGCAGGATCAACAGCAC
318 ACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAGCAGGATCGACAGCAC
* * * * *
10789837 GTAGGGGGGATCGGGTTGATCCCTGACTTACGCATTCTGCCTCTCCGA
383 GCAGGGGGGATCGGG-TGATCCCCGGCCTATGCATTCTGCCTCTCCGA
10789885 TCGGCTGAGT
Statistics
Matches: 779, Mismatches: 128, Indels: 55
0.81 0.13 0.06
Matches are distributed among these distances:
499 14 0.02
500 400 0.51
501 48 0.06
502 310 0.40
503 7 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (496 bp):
GCATACAGAGTTCATTCCTAGTCTAAGATCGGACCGAACTGAGGGTTGCGGCAGTAGGATCGACA
GCACGCAGGGGGGATCGAGTCGATCCCGGCTTGCGCATTCTGCCTCTTCGGCCGATTGAGCACCC
GCATGCCTTTCGTGGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACC
GAGGGTTGTGGCAGTGGGACGACAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTAAGCATT
ATGCCTCTTCGATCGGCTCATCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACAGAGTT
CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAGCAGGATCGACAGCACGCAGGGGG
GATCGGGTGATCCCCGGCCTATGCATTCTGCCTCTCCGACCAACTAAGCGCCCGCACGCTCGTTT
CGTGGGTTAACTTAGGCATACAGAGTTCATCCCCAGTCTAA
Found at i:10789929 original size:26 final size:26
Alignment explanation
Indices: 10789899--10789951 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10789889 CTGAGTGTCT
10789899 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
10789925 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10789951 G
1 G
10789952 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10790312 original size:26 final size:26
Alignment explanation
Indices: 10790282--10790331 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
10790272 GACTTAGGCG
10790282 TATGGAGTTCATCCCCAGTCTAAGCA
1 TATGGAGTTCATCCCCAGTCTAAGCA
* *
10790308 TATGGAGTTGATTCCCAGTCTAAG
1 TATGGAGTTCATCCCCAGTCTAAG
10790332 ATCGCACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (26 bp):
TATGGAGTTCATCCCCAGTCTAAGCA
Found at i:10790830 original size:26 final size:26
Alignment explanation
Indices: 10790781--10790833 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10790771 GTTGGCTTAG
*
10790781 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
10790807 GCATACGGAGTTTATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
10790833 G
1 G
10790834 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:10797440 original size:26 final size:26
Alignment explanation
Indices: 10797403--10797455 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10797393 GTTGACTTAG
*
10797403 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
10797429 GCATAC-AGAGTTCATTCCCAATCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
10797455 G
1 G
10797456 AGGGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:10797746 original size:159 final size:159
Alignment explanation
Indices: 10797483--10797931 Score: 469
Period size: 159 Copynumber: 2.8 Consensus size: 159
10797473 GTTACGGTAA
* * * * * *
10797483 CAGGATCGATAGCATGCAGAAGGGACCGGGCCAATCCCCGGCTTGCACATTCTGCCTCTCCGATT
1 CAGGATCGATAGCATGCAGAGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATC
* * * *
10797548 GGCTGAGTGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATA-GAGAGTTCATTCCTTGTCTA
66 GGCTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACG-GAGTTCATTCCTTGTCTA
* * * * **
10797612 AGCCCCAGTC-GGACCGAGGGTTGTGGCAG
130 AGCACCAGACTGAACCGAAGGTTGCAGCAG
* * * * *
10797641 CAGGACCGACAGCATGCAGATGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTGTTCGGT
1 CAGGATCGATAGCATGCAGA-GGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGAT
* * *
10797706 CGGCTCAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CTCAGTCT
65 CGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCT-TGTCT
* * * *
10797770 CAG-ATCAGACTGAATCGAAGGTTGCATCAG
129 AAGCACCAGACTGAACCGAAGGTTGCAGCAG
* * * * *
10797800 TAGGATCGATAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTG-CTCTTCGATC
1 CAGGATCGATAGCATGCAGAGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATC
* * * * * *
10797864 GGCTGAGCACCCGTACGA-TCGTTTCGTGGGTTGGTTTAGGCATATGGAGTTCATTCCATGTCTA
66 GGCTGAGCGCCCGCAC-ACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTA
10797928 AGCA
130 AGCA
10797932 TACGGAGTTC
Statistics
Matches: 236, Mismatches: 48, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
157 60 0.25
158 58 0.25
159 117 0.50
160 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
CAGGATCGATAGCATGCAGAGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATC
GGCTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAA
GCACCAGACTGAACCGAAGGTTGCAGCAG
Found at i:10797998 original size:12 final size:12
Alignment explanation
Indices: 10797977--10798011 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
10797967 CCAAGGGTTG
*
10797977 CGGCAACAGGAC
1 CGGCAGCAGGAC
10797989 CGGCAGCAGGAC
1 CGGCAGCAGGAC
*
10798001 CAGCAGCAGGA
1 CGGCAGCAGGA
10798012 TCGGTACCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.31, C:0.31, G:0.37, T:0.00
Consensus pattern (12 bp):
CGGCAGCAGGAC
Found at i:10798623 original size:158 final size:158
Alignment explanation
Indices: 10798378--10799229 Score: 602
Period size: 159 Copynumber: 5.4 Consensus size: 158
10798368 TGCGAAAGCA
* * * *
10798378 GGATCGACAGCACGCAGGGGGGATC-AGGCTGATTCC-C-GACTTGCGCATTCTGCCTCTCC-AG
1 GGATCGACAGCACGCAGGGGGGACCGA-GCCGA-TCCTCAG-CTTGCTCATTCTGCCTCTCCGAC
* ** * *
10798439 TCGGCTGAGCGCCTGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
63 T-GGATGAGCGCCCACACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
*
10798504 AAACCCCCGCCGGACCGAGGGTTGTGGCAGCG
127 AAACCCCAGCCGGACCGAGGGTTGTGGCAGCG
*
10798536 GGATCGACAGTACGCAGGGGGGACCGAGCCGATCCTCAGCTTGCTCATTCTGCCTCTCCGACTGG
1 GGATCGACAGCACGCAGGGGGGACCGAGCCGATCCTCAGCTTGCTCATTCTGCCTCTCCGACTGG
* *
10798601 ATGAGCGCCCACACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTGTAAGC
66 ATGAGCGCCCACACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAAC
* *
10798666 TCCAGCCGGACCGAGGGTTGTGGCAACG
131 CCCAGCCGGACCGAGGGTTGTGGCAGCG
* * * * * * * * *
10798694 GGACCGACAGCATGTAGAGGGGGACCGGGCCGATCCTCGGCTGGCGT-ATTATGCCTCTCCGGCC
1 GGATCGACAGCACGCAG-GGGGGACCGAGCCGATCCTCAGCTTGC-TCATTCTGCCTCTCCGACT
* * * * ** * * * * *
10798758 AGCTCAGTGCTTACACGA-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCA-GTGT
64 GGATGAGCGCCCACAC-ACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTC-CATGTCT
* * * * * **
10798821 AAGA--TCAGACTGGATCGAGGGTTGTAGTAGTA
127 AA-ACCCCAG-CCGGACCGAGGGTTGTGGCAGCG
* * * * * *
10798853 GGATCGACAGCACGCAGGGGGGACCGAGCTGATCCCCAGCTTG-TGTACTCTGCCTCTCCGGC-C
1 GGATCGACAGCACGCAGGGGGGACCGAGCCGATCCTCAGCTTGCT-CATTCTGCCTCTCCGACTG
* * * *
10798916 GATTGAGTG-CCACACGCTCGTTTCATGGGTTGGCTTAGTCATAGGGAGTTCATTCCATGTCTAA
65 GA-TGAGCGCCCACACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * * * * *
10798980 GCCCCAGCCAGATCGAGGGTTATGGCTGTG
129 ACCCCAGCCGGACCGAGGGTTGTGGCAGCG
* * * * * * *
10799010 GGACCGACAGCACGCAGAGGGGGACCGGGCCGATCC-CCGACTTACGCATTATGCCTCTTCGACT
1 GGATCGACAGCACGCAG-GGGGGACCGAGCCGATCCTCAG-CTTGCTCATTCTGCCTCTCCGACT
* * * ** ** * * * * * *
10799074 GGCTCAACGCCTGCATGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTA
64 GGATGAGCGCCCACACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTA
**** * * **
10799138 AGATTGGA-TCGGACTGAGGGTTGTGGCAGTA
128 A-ACCCCAGCCGGACCGAGGGTTGTGGCAGCG
* * * * * *
10799169 GGATCGGCAGCACGCAGTGGGGGACCAAGTCGATCCTCGGCTT-ATGCATTCTACCTCTCCG
1 GGATCGACAGCACGCAG-GGGGGACCGAGCCGATCCTCAGCTTGCT-CATTCTGCCTCTCCG
10799230 GTCGGCTGAG
Statistics
Matches: 545, Mismatches: 123, Indels: 51
0.76 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 81 0.15
158 225 0.41
159 226 0.41
160 10 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GGATCGACAGCACGCAGGGGGGACCGAGCCGATCCTCAGCTTGCTCATTCTGCCTCTCCGACTGG
ATGAGCGCCCACACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAAC
CCCAGCCGGACCGAGGGTTGTGGCAGCG
Found at i:10799067 original size:316 final size:314
Alignment explanation
Indices: 10798382--10799204 Score: 904
Period size: 316 Copynumber: 2.6 Consensus size: 314
10798372 AAAGCAGGAT
* * * * * * * *
10798382 CGACAGCACGCAG-GGGGGATCAGGCTGATTCCCGACTTGCGCATTCTGCCTCTCCAGTCGGCTG
1 CGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTC
* * * * *
10798446 AGCGCCTGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA-ACCC
66 AGCGCCTGCACGTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGA--T
* * ** * *
10798510 CCG-CCGGACCGAGGGTTGTGGCAGCGGGATCGACAGTACGCAGGGGGGACCGAGCCGATCCTCA
127 CAGACTGGA-CGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCA
* *
10798574 GCTTGCTCATTCTGCCTCTCCGACTGGATGAGCGCCCACACACCCGTTTCATGGGTTGGCTTAGG
191 GCTTGCTCACTCTGCCTCTCCGACTCGATGAGCGCCCACACACCCGTTTCATGGGTTGGCTTAGG
* * * *
10798639 CATAGGGAGTTCATTCCATGTGTAAGCTCCAGCCGGACCGAGGGTTGTGGCAACGGGAC
256 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAACGGGAC
* * * * * * *
10798698 CGACAGCATGTAGAGGGGGACCGGGCCGATCCTCGGCTGGCGTATTATGCCTCTCCGGCCAGCTC
1 CGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTC
* * * *
10798763 AGTGCTTACACGATCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTGTAAGATCA
66 AGCGCCTGCACG-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC-CAGTCTAAGATCA
* * *
10798828 GACTGGATCGAGGGTTGTAGTAGTAGGATCGACAGCACGCAGGGGGGACCGAGCTGATCCCCAGC
129 GACTGGA-CGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCAGC
* * * * * *
10798893 TTG-TGTACTCTGCCTCTCCGGC-CGATTGAGTG-CCACACGCTCGTTTCATGGGTTGGCTTAGT
193 TTGCT-CACTCTGCCTCTCCGACTCGA-TGAGCGCCCACACACCCGTTTCATGGGTTGGCTTAGG
* ***
10798955 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTATGGCTGTGGGAC
256 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAACGGGAC
* * * *
10799014 CGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTTCGACTGGCTC
1 CGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTC
* * * * **
10799079 AACGCCTGCATGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATTG
66 AGCGCCTGCACG-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCA
* * *
10799144 GA-TCGGACTGAGGGTTGTGGCAGTAGGATCGGCAGCACGCAGTGGGGGACCAAGTCGATCC
129 GACT-GGAC-GAGGGTTGTGGCAGTAGGATCGACAGCACGCAG-GGGGGACCGAGCCGATCC
10799205 TCGGCTTATG
Statistics
Matches: 418, Mismatches: 78, Indels: 21
0.81 0.15 0.04
Matches are distributed among these distances:
315 2 0.00
316 235 0.56
317 177 0.42
318 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (314 bp):
CGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTC
AGCGCCTGCACGTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGA
CTGGACGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTG
CTCACTCTGCCTCTCCGACTCGATGAGCGCCCACACACCCGTTTCATGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAACGGGAC
Found at i:10799228 original size:475 final size:475
Alignment explanation
Indices: 10798322--10799639 Score: 1077
Period size: 475 Copynumber: 2.7 Consensus size: 475
10798312 CCTAATCTAA
* *
10798322 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGAAAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGAGAAAGCAGGATCGACA
* * * * *
10798387 GCACGCAGGGGGGATCAGGCTGATTCCCGACTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCGCC
66 GCACGCAGGGGGGACCAGGCTGATCCCCGACTTGCGCACTCTGCCTCTCCAGCCGACTGAGCGCC
* * *
10798452 TGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCCGCCGG
131 TACACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCAG
* * * * * *
10798517 ACCGAGGGTTGTGGCAGCGGGATCGACAGTACGCAGGGGGGACCGAGCCGATCCTCAGCTTGCTC
196 ACCGAGGGTTATGGCAGCGGGACCGACAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTACGC
* * * * * *
10798582 ATTCTGCCTCTCCGACTGGATGAGCGCCCACACACCCGTTTCATGGGTTGGCTTAGGCATAGGGA
261 ATTATGCCTCTCCGACTGGATCAACGCCCACACACCCATTTCATGGGTTGACTTAGGCATACGGA
* * * *
10798647 GTTCATTCCATGTGTAAGCTCCAGCCGGACCGAGGGTTGTGGCAACGGGACCGACAGCATGTAGA
326 GTTCATTCCATGTCTAAGCTCCAGCCGGACCGAGGGTTGTGGCAACAGGACCGACAGCACGCAGA
** * * *
10798712 GGGGGACCGGGCCGATCCTCGGCTGGCGTATTATGCCTCTCCGGCCAGCTCAGTGCTTACACGAT
391 GGGGGACCAAGCCGATCCTCGGCTGACGCATTATACCTCTCCGGCCAGCTCAGTGCTTACACGAT
10798777 CGTTTCGTGGGTTGACTTAG
456 CGTTTCGTGGGTTGACTTAG
* * * * * *
10798797 GCATACGGAGTTCATTCTCAGTGTAAGATCAGA-CTGGATCGAGGGTTGTAG-TAGTAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCAAGGGTTG-AGAAAGCAGGATCGA
* * * *
10798860 CAGCACGCAGGGGGGACC-GAGCTGATCCCC-AGCTTGTGTACTCTGCCTCTCCGGCCGATTGAG
64 CAGCACGCAGGGGGGACCAG-GCTGATCCCCGA-CTTGCGCACTCTGCCTCTCCAGCCGACTGAG
* * *
10798923 TGCC-ACACG-CTCGTTTCATGGGTTGGCTTAGTCATAGGGAGTTCATTCCATGTCTAAGCCCCA
127 CGCCTACACGCCT-GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCA
* * * *
10798986 GCCAGATCGAGGGTTATGGCTGTGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCC-GA
191 GCCAGACCGAGGGTTATGGCAGCGGGACCGACAGCACGCAG-GGGGGACCGAGCCGATCCCCAG-
* * ** ** * * *
10799050 CTTACGCATTATGCCTCTTCGACTGGCTCAACGCCTGCATGCTCATTTCGTGGGTTGACTTATGC
254 CTTACGCATTATGCCTCTCCGACTGGATCAACGCCCACACACCCATTTCATGGGTTGACTTAGGC
* ** * * ** * *
10799115 ATACGGAGTTCATTCCCA-GTCTAAGAT-TGGATCGGACTGAGGGTTGTGGCAGTAGGATCGGCA
319 ATACGGAGTTCATT-CCATGTCTAAGCTCCAG-CCGGACCGAGGGTTGTGGCAACAGGACCGACA
* * * * * * * * **
10799178 GCACGCAGTGGGGGACCAAGTCGATCCTCGGCTTATGCATTCTACCTCTCCGGTCGGCTGAGCAC
382 GCACGCAGAGGGGGACCAAGCCGATCCTCGGCTGACGCATTATACCTCTCCGGCCAGCTCAGTGC
*** * * *
10799243 CCGCACGCTCGTTTCGTCGGTTAACTTAG
447 TTACACGATCGTTTCGTGGGTTGACTTAG
** *
10799272 GCATACAAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATTTAAGATCGCACCGAAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A-T--C-------G---G-ACC--A-
* * * * *
10799337 CGAGGGTTGCAG-CAGCAGGATCGATAGCACGCAGGGGGGACCGGGCTGATCCTCGGCTTGCGCA
42 --AGGGTTG-AGAAAGCAGGATCGACAGCACGCAGGGGGGACCAGGCTGATCCCCGACTTGCGCA
* * * * * * *
10799401 TTCTACCAT-TTCGGCC-AGCTGAGCGCCCACACGGCCCT-TTT-GTGGGATGGCTTAGGCATAG
104 CTCTGCC-TCTCCAGCCGA-CTGAGCGCCTACAC-G-CCTGTTTCATGGGTTGGCTTAGGCATAG
* * * ** * *
10799462 GGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGG-TTGGCAGCACGT
165 GGAGTTCATTCCATGTCTAAACCCCAGCCAGACCGAGGGTTATGGCAGCGGGACCGACAGCACGC
* * * * * * **
10799526 AGAGGGGGATCGGGCTGAT-CCCAGCTTGCGCATTATGCCTCTCTGA-TCGGCTCAACGCCCGGA
230 AG-GGGGGACCGAGCCGATCCCCAGCTTACGCATTATGCCTCTCCGACT-GGATCAACGCCCACA
* * * * * *
10799589 CACTCGTCTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCTGTCTAAG
293 CACCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
10799640 ATTGGACCAG
Statistics
Matches: 668, Mismatches: 129, Indels: 67
0.77 0.15 0.08
Matches are distributed among these distances:
473 2 0.00
474 91 0.14
475 309 0.46
476 6 0.01
477 1 0.00
479 2 0.00
482 1 0.00
486 1 0.00
492 1 0.00
495 1 0.00
496 2 0.00
499 3 0.00
500 77 0.12
501 95 0.14
502 70 0.10
503 4 0.01
505 2 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (475 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGAGAAAGCAGGATCGACA
GCACGCAGGGGGGACCAGGCTGATCCCCGACTTGCGCACTCTGCCTCTCCAGCCGACTGAGCGCC
TACACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCAG
ACCGAGGGTTATGGCAGCGGGACCGACAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTACGC
ATTATGCCTCTCCGACTGGATCAACGCCCACACACCCATTTCATGGGTTGACTTAGGCATACGGA
GTTCATTCCATGTCTAAGCTCCAGCCGGACCGAGGGTTGTGGCAACAGGACCGACAGCACGCAGA
GGGGGACCAAGCCGATCCTCGGCTGACGCATTATACCTCTCCGGCCAGCTCAGTGCTTACACGAT
CGTTTCGTGGGTTGACTTAG
Found at i:10799258 original size:159 final size:158
Alignment explanation
Indices: 10798322--10799788 Score: 757
Period size: 158 Copynumber: 9.1 Consensus size: 158
10798312 CCTAATCTAA
* * * * * **
10798322 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGAAAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCCGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * *
10798387 GCACGCAGGGGGGATC-AGGCTGATTCC-CGACTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCG
66 GCACGCAGGGGGGACCGA-GCCGA-TCCTCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGCG
** *
10798450 CCTGCACGC-CTGTTTCATGGGTTGGCTTAG
129 CCCACACGCTC-GTTTCATGGGTTGACTTAG
* *
10798480 GCATAGGGAGTTCATT-CCATGTCTAA-ACCCCCG-CCGGACCGAGGGTTGTGGCAGCGGGATCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGA--CCCGACCGGACCGAGGGTTGTGGCAGCAGGATCG
* * * *
10798542 ACAGTACGCAGGGGGGACCGAGCCGATCCTCAGCTTGCTCATTCTGCCTCTCC-GACTGGATGAG
63 ACAGCACGCAGGGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGAC-GGCTGAG
* * *
10798606 CGCCCACACACCCGTTTCATGGGTTGGCTTAG
127 CGCCCACACGCTCGTTTCATGGGTTGACTTAG
* * * * *
10798638 GCATAGGGAGTTCATT-CCATGTGTAAG-CTCC-AGCCGGACCGAGGGTTGTGGCAACGGGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGAC-CCGA-CCGGACCGAGGGTTGTGGCAGCAGGATCG
* * * * * * * * *
10798700 ACAGCATGTAGAGGGGGACCGGGCCGATCCTCGGCTGGCGTATTATGCCTCTCCGGCCAGCTCAG
63 ACAGCACGCAG-GGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAG
* ** * *
10798765 TGCTTACACGATCGTTTCGTGGGTTGACTTAG
127 CGCCCACACGCTCGTTTCATGGGTTGACTTAG
* * * * * * * * *
10798797 GCATACGGAGTTCATTCTCAGTGTAAGATCAGACTGGATCGAGGGTTGTAGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCCGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * * ** *
10798862 GCACGCAGGGGGGACCGAGCTGATCCCCAGCTTGTGTACTCTGCCTCTCCGGCCGATTGAGTG-C
66 GCACGCAGGGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGCGCC
*
10798926 CACACGCTCGTTTCATGGGTTGGCTTAG
131 CACACGCTCGTTTCATGGGTTGACTTAG
* * * * * * * ** *
10798954 TCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCAGATCGAGGGTTATGGCTGTGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGACCCGA-CCGGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * * * * *
10799017 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTTC-GACTGGCTCAA
64 CAGCACGCAG-GGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGAC-GGCTGAG
** * * * *
10799081 CGCCTGCATGCTCATTTCGTGGGTTGACTTAT
127 CGCCCACACGCTCGTTTCATGGGTTGACTTAG
*** * * * *
10799113 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTGTGGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCCGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * ** * * *
10799178 GCACGCAGTGGGGGACCAAGTCGATCCTCGGCTTATGCATTCTACCTCTCCGGTCGGCTGAGCAC
66 GCACGCAG-GGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGCGC
* * * *
10799243 CCGCACGCTCGTTTCGTCGGTTAACTTAG
130 CCACACGCTCGTTTCATGGGTTGACTTAG
** * ** * * * **
10799272 GCATACAAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATTTAAGATCGCACCGAAT
1 GCATACGGAGTTCATTCCCAGTCTAAG---AC-CCG---A---CC------GGACCG-A-GGGTT
** * * * *
10799337 CGAGGGTTGCAGCAGCA-GGATCGATAGCACGCAGGGGGGACCGGGCTGATCCTCGGCTTGCGCA
48 GT---G--GCAGCAGGATCGA-C---AGCACGCAGGGGGGACCGAGCCGATCCTCGGCTTGCGCA
* * * * * ** * *
10799401 TTCTACCAT-TTCGGCCAGCTGAGCGCCCACACGGC-CCTTTTGTGGGATGGCTTAG
104 TTCTGCC-TCTCCGGACGGCTGAGCGCCCACAC-GCTCGTTTCATGGGTTGACTTAG
* * * * * * *
10799456 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCAGACCGAGGGTTGTGGCAGC-GGGTTGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGACCCGA-CCGGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * * * * * *
10799518 CAGCACGTAGAGGGGGATCGGGCTGATCC-CAGCTTGCGCATTATGCCTCT-CTGATCGGCTCAA
64 CAGCACGCAG-GGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGA-CGGCTGAG
** * * * *
10799581 CGCCCGGACACTCGTCTCGTGGGTTAACTTAG
127 CGCCCACACGCTCGTTTCATGGGTTGACTTAG
* *** * * * *
10799613 GCATACGGAGTTCATTCCCTGTCTAAGATTGGACCAGACCAAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCCGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * **
10799678 GCACGTAGGGGGGATCGGGTCGATCCCCAGCTCACGCATTCTGCCTCTCC-GACTGGCTGAGCGC
66 GCACGCAGGGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGAC-GGCTGAGCGC
** * * * *
10799742 CCGTATGCTAGTTTCGTGGGTTGGCTTAG
130 CCACACGCTCGTTTCATGGGTTGACTTAG
10799771 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
10799789 ATATCTAAGC
Statistics
Matches: 995, Mismatches: 249, Indels: 130
0.72 0.18 0.09
Matches are distributed among these distances:
156 9 0.01
157 196 0.20
158 359 0.36
159 283 0.28
160 13 0.01
161 6 0.01
162 1 0.00
163 2 0.00
166 3 0.00
167 1 0.00
168 5 0.01
169 1 0.00
174 1 0.00
175 3 0.00
176 2 0.00
177 2 0.00
180 2 0.00
181 1 0.00
182 8 0.01
183 3 0.00
184 82 0.08
185 12 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCCGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGCGCC
CACACGCTCGTTTCATGGGTTGACTTAG
Found at i:10799457 original size:184 final size:185
Alignment explanation
Indices: 10799113--10799460 Score: 391
Period size: 184 Copynumber: 1.9 Consensus size: 185
10799103 GTTGACTTAT
* * * * * ** * *
10799113 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTGTGGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGCACCGAACTGAGGGTTGCAGCAGCAGGATCGACA
* * *
10799178 GCACGCAGTGGGGGACCAAGTCGATCCTCGGCTTATGCATTCTACCTCTCCGGTCGGCTGAGCAC
66 GCACGCAGTGGGGGACCAAGTCGATCCTCGGCTTACGCATTCTACCTCTCCGGCCAGCTGAGCAC
* * *
10799243 CCGCACGCTCGTTTCGTCGGTTAACTTAGGCATACAAAGTTCATCCCCAGTCTAA
131 CCACACGCTCCTTTCGTCGGATAACTTAGGCATACAAAGTTCATCCCCAGTCTAA
* *
10799298 GCATACGGAGTTCATTCCCAATTTAAGATCGCACCGAA-TCGAGGGTTGCAGCAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAATCTAAGATCGCACCGAACT-GAGGGTTGCAGCAGCAGGATCGAC
* * * *
10799362 AGCACGCAG-GGGGGACC-GGGCTGATCCTCGGCTTGCGCATTCTACCAT-TTCGGCCAGCTGAG
65 AGCACGCAGTGGGGGACCAAGTC-GATCCTCGGCTTACGCATTCTACC-TCTCCGGCCAGCTGAG
* * * **
10799424 CGCCCACACGGC-CCTTTTGTGGGATGGCTTAGGCATA
128 CACCCACAC-GCTCCTTTCGTCGGATAACTTAGGCATA
10799461 GGGAGTTCAT
Statistics
Matches: 133, Mismatches: 26, Indels: 9
0.79 0.15 0.05
Matches are distributed among these distances:
183 2 0.02
184 68 0.51
185 63 0.47
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGCACCGAACTGAGGGTTGCAGCAGCAGGATCGACA
GCACGCAGTGGGGGACCAAGTCGATCCTCGGCTTACGCATTCTACCTCTCCGGCCAGCTGAGCAC
CCACACGCTCCTTTCGTCGGATAACTTAGGCATACAAAGTTCATCCCCAGTCTAA
Found at i:10799821 original size:26 final size:26
Alignment explanation
Indices: 10799771--10799823 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10799761 GTTGGCTTAG
*
10799771 GCATACGGAGTTCATTCCATATCTAA
1 GCATACGGAGTTCATTCCAGATCTAA
* *
10799797 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCAGATCTAA
10799823 G
1 G
10799824 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAGATCTAA
Found at i:10800306 original size:26 final size:26
Alignment explanation
Indices: 10800276--10800328 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10800266 GTTGACTTAG
*
10800276 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
10800302 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
10800328 G
1 G
10800329 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:10800620 original size:159 final size:159
Alignment explanation
Indices: 10800446--10800803 Score: 397
Period size: 159 Copynumber: 2.3 Consensus size: 159
10800436 GCCCGTTTCA
* * * *
10800446 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-TCCCAGCCAGATCGAAGGTTGTGG
1 TGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGATCCCA-CCAGACCGAAGGTTGCGA
** * * *
10800510 CAGCGGGACCTG-TAGCACGT-AGAGGGGGATCGGG-CTGATCCCCGACTTGCGCATTATGCCTC
65 CAGCAAG-CCTGACAGCACGTAAG-GGGGGATCGGGTC-GATCCCCGACTTACGCATTATACCTC
* *
10800572 TCCAGCTGGCTT-AGCGCCCGCACGCTC-ATTTTG
127 TCCAGCCGG-TTGAGCGCCCGCACGCTCGA-TTCG
* * * ** *
10800605 TGGGTTGACTTAGGCATATGAAGTTCATTCCCA-GTCTATGATCGGACCAGACCGAGGGTTGCGA
1 TGGGTTGGCTTAGGCATATGGAGTTCATT-CCATGTCTAAGATCCCACCAGACCGAAGGTTGCGA
** * *
10800669 CAGCAAGTTTGACAGCACGTAAGGGGGGATCGGGTCGATCCTCGACTTACGCATTCTACCTCTCC
65 CAGCAAGCCTGACAGCACGTAAGGGGGGATCGGGTCGATCCCCGACTTACGCATTATACCTCTCC
*
10800734 AGCCGGTTGAGTGCCCGCACGCTCGATTCG
130 AGCCGGTTGAGCGCCCGCACGCTCGATTCG
*
10800764 TGGGTTGGCTTAGACATATGGAGTTCATTCCATGTCTAAG
1 TGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
10800804 CATAAGGAGT
Statistics
Matches: 165, Mismatches: 26, Indels: 16
0.80 0.13 0.08
Matches are distributed among these distances:
158 7 0.04
159 148 0.90
160 10 0.06
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (159 bp):
TGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGATCCCACCAGACCGAAGGTTGCGAC
AGCAAGCCTGACAGCACGTAAGGGGGGATCGGGTCGATCCCCGACTTACGCATTATACCTCTCCA
GCCGGTTGAGCGCCCGCACGCTCGATTCG
Found at i:10800814 original size:26 final size:26
Alignment explanation
Indices: 10800778--10800829 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10800768 TTGGCTTAGA
*
10800778 CATATGGAGTTCATTCC-ATGTCTAAG
1 CATAAGGAGTTCATTCCTA-GTCTAAG
10800804 CATAAGGAGTTCATTCCTAGTCTAAG
1 CATAAGGAGTTCATTCCTAGTCTAAG
10800830 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (26 bp):
CATAAGGAGTTCATTCCTAGTCTAAG
Found at i:10801010 original size:26 final size:26
Alignment explanation
Indices: 10800974--10801026 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10800964 GTTGGCTTAG
10800974 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
10801000 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10801026 G
1 G
10801027 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10801014 original size:197 final size:197
Alignment explanation
Indices: 10800679--10801198 Score: 700
Period size: 197 Copynumber: 2.6 Consensus size: 197
10800669 CAGCAAGTTT
* * *
10800679 GACAGCACGTAAGGGGGGATCGGGTCGATCCTCGACTTACGCATTCTACCTCTCCAGCCGGTTGA
1 GACAGCACGCAAGGGGGGATCGGGTCGATCCCCGACTTACGCATTCTACCTCTCCAGCCGGCTGA
* * *
10800744 GTGCCCGCACGCTCGATTCGTGGGTTGGCTTAGACATATGGAGTTCATTCCATGTCTAAGCATAA
66 GTGCCCGCACGCTCGTTTAGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATAA
* * * * * *
10800809 GGAGTTCATTCCTAGTCTAAGATTGGACCGGATCGAGGGTTGCGGTAGTAAGTCCAGCAGCAGGA
131 GGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAAGACCAGCAGCAGGA
10800874 TC
196 TC
* * * * * * * *
10800876 GACAGCACGCAAGAGGGGATCGGGCCGATCCCCGACTTATGCATTCTGCCTTTCCGGTCGACTGA
1 GACAGCACGCAAGGGGGGATCGGGTCGATCCCCGACTTACGCATTCTACCTCTCCAGCCGGCTGA
* * *
10800941 GTGCCCGCACGCTCGTTTAATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAG
66 GTGCCCGCACGCTCGTTTAGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATAA
* *
10801006 GGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGCGGTAGCAGGACCAGCAGCAGGA
131 GGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAAGACCAGCAGCAGGA
*
10801071 TT
196 TC
* * * * * *
10801073 GGCAGCACGCAGGGGGGGA-CTGGGTCGATCCCCGGCTTGCACATTCTACCTCTCTAGCCGGCTG
1 GACAGCACGCAAGGGGGGATC-GGGTCGATCCCCGACTTACGCATTCTACCTCTCCAGCCGGCTG
* * * *
10801137 AGCGCCCGCACGCTCGTTTTGTTGGTTGGCTTAGGTATATGGAGTTCATTCCATGTCTAAGC
65 AGTGCCCGCACGCTCGTTTAGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
10801199 CCCAGCCAGA
Statistics
Matches: 276, Mismatches: 46, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
196 1 0.00
197 275 1.00
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.24
Consensus pattern (197 bp):
GACAGCACGCAAGGGGGGATCGGGTCGATCCCCGACTTACGCATTCTACCTCTCCAGCCGGCTGA
GTGCCCGCACGCTCGTTTAGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATAA
GGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAAGACCAGCAGCAGGA
TC
Found at i:10801909 original size:26 final size:26
Alignment explanation
Indices: 10801853--10801909 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
10801843 GTTGGTTGGC
*
10801853 TTAAGCATACGGAGTTCATTCCATGT
1 TTAAGCATACGAAGTTCATTCCATGT
* * *
10801879 CTAAGCATTCGAATTTCATTCC-TAGT
1 TTAAGCATACGAAGTTCATTCCAT-GT
10801905 TTAAG
1 TTAAG
10801910 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (26 bp):
TTAAGCATACGAAGTTCATTCCATGT
Found at i:10802239 original size:26 final size:26
Alignment explanation
Indices: 10802210--10802262 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10802200 GTTGGCTTAG
*
10802210 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
10802236 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10802262 G
1 G
10802263 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10802545 original size:13 final size:13
Alignment explanation
Indices: 10802527--10802551 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10802517 GTGCATTATG
10802527 CCTCTTCGATCGA
1 CCTCTTCGATCGA
10802540 CCTCTTCGATCG
1 CCTCTTCGATCG
10802552 GCTGAGCGCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.40, G:0.16, T:0.32
Consensus pattern (13 bp):
CCTCTTCGATCGA
Found at i:10807192 original size:26 final size:26
Alignment explanation
Indices: 10807156--10807208 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10807146 GTTGGCTTAG
10807156 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
10807182 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10807208 G
1 G
10807209 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10808047 original size:26 final size:26
Alignment explanation
Indices: 10808011--10808063 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10808001 GTTGGCTTAG
*
10808011 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCACTCCCA-GTCTAA
*
10808037 GCATATGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
10808063 G
1 G
10808064 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:10809034 original size:158 final size:157
Alignment explanation
Indices: 10808744--10809244 Score: 451
Period size: 158 Copynumber: 3.2 Consensus size: 157
10808734 CCCTGTCTAA
* ** ** * *** *
10808744 GCATACGAAGTTCATTCC-TAGTCTAAGATCGGACTGGACTGAGGGTTAAAGCCGCAGGATCAAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCCCACCAGACCGAGGGTTGCGGCAGCAGGATCAAC
* * * * *
10808808 AGCATGCA-AGGGGGACCGGGTCGATCTCTGGCTTGCGCATTCTACCTCTCC-AGCCAGCTGAGC
65 AGCA--CATAGGGGGATCGGGACGATCCCCGGCTTGCGCATTCTACCTCTCCGA-CCGGCTGAGC
*
10808871 ACCCGCACGCCCATTTCGTGGGTTGGCTTAG
127 ACCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * **
10808902 GCATAGGGAGTTCATTCCATGTCTAAG-TCCCAGTCGGACCGAGGGTTGTGGCAGTGGGACTGGC
1 GCATACGGAGTTCATTCCATGTCTAAGATCCCA-CCAGACCGAGGGTTGCGGCAGCAGGA-T--C
* * * ** *
10808966 AGCAAGCAGA-A-GGGGATC-GGACGATCCCCGGCTTGCGCATTATGGCTCTCCGACCGGCTTAG
62 AAC-AGCACATAGGGGGATCGGGACGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAG
* * *
10809028 CGCCCGCACGCTCATTTGGTGGGTTGACTTAG
126 CACCCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** *
10809060 GCATACGGAGTTAATTCCCA-GTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCCCACCAGACCGAGGGTTGCGGCAGCAGGATCAAC
* * * * *
10809124 AGCACATAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTATCTCTCCGATCGACTGAGCAC
65 AGCACATA-GGGGGATCGGGACGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCAC
* * *
10809189 CTGCACGCTCGTTTCGTAGGTTGGCTTAG
129 CCGCACGCTCATTTCGTGGGTTGGCTTAG
*
10809218 GCATACGGAGTTCATTTCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
10809245 CATATAGAGT
Statistics
Matches: 273, Mismatches: 56, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
154 5 0.02
155 4 0.01
157 13 0.05
158 227 0.83
159 15 0.05
160 2 0.01
161 3 0.01
162 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCCCACCAGACCGAGGGTTGCGGCAGCAGGATCAACA
GCACATAGGGGGATCGGGACGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCACCC
GCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:10809625 original size:26 final size:26
Alignment explanation
Indices: 10809585--10809637 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10809575 GTTGACTCAG
* *
10809585 GCATACTGAGTTCATCCCCAGTCTAA
1 GCATACAGAGGTCATCCCCAGTCTAA
*
10809611 GCATACAGAGGTCATTCCCAGTCTAA
1 GCATACAGAGGTCATCCCCAGTCTAA
10809637 G
1 G
10809638 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGGTCATCCCCAGTCTAA
Found at i:10809816 original size:355 final size:345
Alignment explanation
Indices: 10809123--10809954 Score: 849
Period size: 355 Copynumber: 2.3 Consensus size: 345
10809113 GCAGGATCAA
* * ** *
10809123 CAGCACATAG-GGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTATCTCTCCGATCGACTGAGC
1 CAGCACATAGAGGGGGATC-GGCTGATCCTC-GCTTGCGCATTATGCCTCTCCGGTCGACTGAGC
* * * * * ** *
10809187 ACCTGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCATATAG
64 GCCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATACTGAGTTCATCCCA-GTCTAAGCATACAG
* * *
10809252 AGTTCATTCCTAATCTAAGATCAGACCAGATTGAGGGTTGCGACAGCAAGACCACCAGCAGGATC
128 AGGTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTT-----AGCAAGA-CA-CAGCAGGATC
* *
10809317 GACAGCACACAAGGGGAACCGGGTCGATCCCCGACTTGCGCAATCTACCTCTCTGATCGACTGAG
186 GACAGCACACAAGGGGAACCGGCTCGATCCCCGACTTGCGCAATCTACCTCTCAGATCGACTGAG
*
10809382 CGCCCGCACGCTCGTCTTGTGGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGCCCCAG
251 CGCCCGCACGCCCGTCTTGTGGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGCCCCAG
*
10809447 CCGAACCAAGGGTTGTGGCTGTAGGACCGACAGCGGG
316 CCGAACCAAGGGTTGTGGCAGT-GG---GAC--C-GG
* * *
10809484 ATCGATAGCACACAGAGGGGGACCGAGCTGATCCTCAGCTTGCGCATTATGCCTCTCCGGTCGGC
1 --C---AGCACATAGAGGGGGATCG-GCTGATCCTC-GCTTGCGCATTATGCCTCTCCGGTCGAC
* *
10809549 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTCAGGCATACTGAGTTCATCCCCAGTCTAAGCA
59 TGAGCGCCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATACTGAGTTCAT-CCCAGTCTAAGCA
* * *
10809614 TACAGAGGTCATTCCCAGTCTAAGATC-GAACCAGACTGAGGGTT-G-TAG-CA-A-TAGGATCG
123 TACAGAGGTCATTCCCAATCTAAGATCAG-ACCAGACTGAGGGTTAGCAAGACACAGCAGGATCG
** * * * * * * *
10809673 ACAGCACATTAGGGGGATCGAGCT-GATCCCCGGCTTGCGCATTCTGCCTTTCCAG-TCGGCTGA
187 ACAGCACACAAGGGGAACCG-GCTCGATCCCCGACTTGCGCAATCTACCTCT-CAGATCGACTGA
* * * *
10809736 GCGCCCGCACGCCCGTTTTTTGGGTTGGCTTAGGCATAGGGAGTTCATTCC-ATGTCTAAGCCCC
250 GCGCCCGCACGCCCGTCTTGTGGATTGGCTTAGGCATACGGAGTTCATTCCTA-GTCTAAGCCCC
* *
10809800 AGCCGGACCGAGGGTTGTGGCAGTGGGACCGG
314 AGCCGAACCAAGGGTTGTGGCAGTGGGACCGG
* * * *
10809832 CAGCACGTAGAGGGGAATCGGGTCGATCCTCGACTTGCGCATTATGCCTCTTCGGTCGACTGAGC
1 CAGCACATAGAGGGGGATCGGCT-GATCCTCG-CTTGCGCATTATGCCTCTCCGGTCGACTGAGC
* *
10809897 GCCAGCACGCTCATTTCGTGGGTTGACTTATGCATA-TGGAGTTCATTCCCAGTCTAAG
64 GCCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATACT-GAGTTCA-TCCCAGTCTAAG
10809955 ATCGGATCAG
Statistics
Matches: 401, Mismatches: 54, Indels: 48
0.80 0.11 0.10
Matches are distributed among these distances:
342 4 0.01
343 102 0.25
344 1 0.00
346 1 0.00
348 2 0.00
349 1 0.00
351 3 0.01
354 3 0.01
355 131 0.33
356 5 0.01
358 2 0.00
360 2 0.00
361 1 0.00
363 1 0.00
366 10 0.02
367 130 0.32
368 2 0.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (345 bp):
CAGCACATAGAGGGGGATCGGCTGATCCTCGCTTGCGCATTATGCCTCTCCGGTCGACTGAGCGC
CAGCACGCTCGTTTCGTGGGTTGACTTAGGCATACTGAGTTCATCCCAGTCTAAGCATACAGAGG
TCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTAGCAAGACACAGCAGGATCGACAGCACAC
AAGGGGAACCGGCTCGATCCCCGACTTGCGCAATCTACCTCTCAGATCGACTGAGCGCCCGCACG
CCCGTCTTGTGGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGCCCCAGCCGAACCAAG
GGTTGTGGCAGTGGGACCGG
Found at i:10809972 original size:159 final size:158
Alignment explanation
Indices: 10809622--10809975 Score: 383
Period size: 159 Copynumber: 2.2 Consensus size: 158
10809612 CATACAGAGG
* * *
10809622 TCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGTAGCAATAGGATCGACAGCACATTAGGG
1 TCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTAGCAATAGGACCGACAGCACAGTAGGG
* * * * *
10809687 GGATCGAGCTGATCCCCGGCTTGCGCATTCTGCCTTTCCAGTCGGCTGAGCGCCCGCACGCCCGT
66 GGATCGAGCTGATCCCCGACTTGCGCATTATGCCTTTCCAGTCGACTGAGCGCCAGCACGCCCAT
** *
10809752 TTTTTGGGTTGGCTTAGGCATAGGGAGT
131 TTCGTGGGTTGACTTAGGCATAGGGAGT
** * * * * * * *
10809780 TCATT-CCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGACCGGCAGCAC-GTAGA
1 TCATTCCCA-GTCTAAGATCGAACCAGACCGAGGGTTGTAGCAATAGGACCGACAGCACAGTAG-
* * *
10809843 GGGGAATCG-GGTCGATCCTCGACTTGCGCATTATGCCTCTT-CGGTCGACTGAGCGCCAGCACG
64 GGGG-ATCGAGCT-GATCCCCGACTTGCGCATTATGCCT-TTCCAGTCGACTGAGCGCCAGCACG
* * *
10809906 CTCATTTCGTGGGTTGACTTATGCATATGGAGT
126 CCCATTTCGTGGGTTGACTTAGGCATAGGGAGT
* *
10809939 TCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTG
1 TCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTG
10809976 CGACAGCAAG
Statistics
Matches: 157, Mismatches: 33, Indels: 11
0.78 0.16 0.05
Matches are distributed among these distances:
157 6 0.04
158 49 0.31
159 97 0.62
160 5 0.03
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
TCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTAGCAATAGGACCGACAGCACAGTAGGG
GGATCGAGCTGATCCCCGACTTGCGCATTATGCCTTTCCAGTCGACTGAGCGCCAGCACGCCCAT
TTCGTGGGTTGACTTAGGCATAGGGAGT
Found at i:10810136 original size:26 final size:26
Alignment explanation
Indices: 10810086--10810138 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10810076 GTTGGCTTAG
**
10810086 GCATACGAAGTTCATTCCCTGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
10810112 GCATAC-AGAGTTCATTCCCAATCTAA
1 GCATACGA-AGTTCATTCCCAATCTAA
10810138 G
1 G
10810139 ATTTTGATCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:10811402 original size:169 final size:171
Alignment explanation
Indices: 10811126--10811439 Score: 368
Period size: 169 Copynumber: 1.8 Consensus size: 171
10811116 CTCAGTGCCC
* * * *
10811126 GCACGCTCATTTCGTGGGTTGACTTAGGCATATATAGTTCATTCGTAGTCTAAGATCGGATCGGA
1 GCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCATAGTCTAAGATCAGATCGGA
* * * *
10811191 CCAAGGGTTGTGATAGCAGGACCAGCAGCAGGATCGGCAGCACGCA-A-GGGGACCGAGCTGATC
66 CCAAGGGTTGTGACAGCAAGACCAGCAACAGGATCAGCAGCACGCAGAGGGGGACCGAGCTGATC
* * *
10811254 CTTGGCTTGCGCATTCTGCCTCTCCAGTCGATTGAGCACCT
131 CCTGACTTACGCATTCTGCCTCTCCAGTCGATTGAGCACCT
** * *
10811295 GCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCA-CAG-TC
1 GCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATT-CATAGTCTAAG--ATCAGATC
* * * * * * *
10811357 GGACCGAGGGTTGTGGCAGCAAGACCGGCAACAGGATTAGCAGCACGTAGAGGGGGATCGGGCTG
63 GGACCAAGGGTTGTGACAGCAAGACCAGCAACAGGATCAGCAGCACGCAGAGGGGGACCGAGCTG
10811422 ATCCCTGACTTACGCATT
128 ATCCCTGACTTACGCATT
10811440 ACACCTCTTC
Statistics
Matches: 118, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
169 86 0.73
170 5 0.04
171 27 0.23
ACGTcount: A:0.22, C:0.24, G:0.31, T:0.24
Consensus pattern (171 bp):
GCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCATAGTCTAAGATCAGATCGGA
CCAAGGGTTGTGACAGCAAGACCAGCAACAGGATCAGCAGCACGCAGAGGGGGACCGAGCTGATC
CCTGACTTACGCATTCTGCCTCTCCAGTCGATTGAGCACCT
Found at i:10811786 original size:197 final size:197
Alignment explanation
Indices: 10811478--10811839 Score: 496
Period size: 197 Copynumber: 1.8 Consensus size: 197
10811468 ATTGAACGTT
* * * * *
10811478 CGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGT
1 CGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATATAAGCATACAGAGT
* * * * * *
10811543 TCATTCCCAGTTTATGATCGGATCGGATCGAGGGTTGTGACAGCAGGATCGACAGCATGTAGAGG
66 TCATTCCCAATCTATGATCGAATCGGACCGAGGGTTGCGACAGCAGGATCGACAGCATGCAG-GG
* * *
10811608 GG-ACC-GGATCGATCCCCGTCTTGTGCATTCTGCCTTTTTGGCCGACCTCTCCGACCGGCTGAG
130 GGAACCGGGCT-GATCCCCGGCTTGCGCATTCTGCCTTTTTGGCCGACCTCTCCGACCGGCTGAG
10811671 TGCC
194 TGCC
* *
10811675 CGCACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAATATAAGCATACGGAGT
1 CGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATATAAGCATACAGAGT
** *
10811740 TCATTCTGAATCTATGATCGAA-CTGGACCGAGGGTTGCGACAGCAGGATTGACAGCATGCAGGG
66 TCATTCCCAATCTATGATCGAATC-GGACCGAGGGTTGCGACAGCAGGATCGACAGCATGCAGGG
*
10811804 GGAACCGGGCTGATCCTCGGCTTGCGCATTCTGCCT
130 GGAACCGGGCTGATCCCCGGCTTGCGCATTCTGCCT
10811840 CTCCAGTCGA
Statistics
Matches: 142, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
196 5 0.04
197 134 0.94
198 3 0.02
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (197 bp):
CGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATATAAGCATACAGAGT
TCATTCCCAATCTATGATCGAATCGGACCGAGGGTTGCGACAGCAGGATCGACAGCATGCAGGGG
GAACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTTTTTGGCCGACCTCTCCGACCGGCTGAGTG
CC
Found at i:10812100 original size:26 final size:26
Alignment explanation
Indices: 10812071--10812124 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
10812061 GTTGACTTAG
10812071 GCATACGGAGTTCAACCCCAGGCTAA
1 GCATACGGAGTTCAACCCCAGGCTAA
** *
10812097 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGGCTAA
10812123 GC
1 GC
10812125 TTGAATTAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCCAGGCTAA
Found at i:10812463 original size:26 final size:26
Alignment explanation
Indices: 10812414--10812466 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10812404 GTTAGCTTAG
* *
10812414 GCATACGGAGTTCATTCGATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
10812440 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
10812466 G
1 G
10812467 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:10813168 original size:25 final size:26
Alignment explanation
Indices: 10813135--10813185 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
10813125 TTGACAAACA
*
10813135 CATACGGAGTTCA-TCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGGCTAAG
*
10813160 CATATGGAGTTCATTCCCAGGCTAAG
1 CATACGGAGTTCATTCCCAGGCTAAG
10813186 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGGCTAAG
Found at i:10813862 original size:26 final size:26
Alignment explanation
Indices: 10813832--10813881 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
10813822 GGCTTAGGCA
10813832 TACGGAGTTCATT-CCACGTCTAAGCG
1 TACGGAGTTCATTCCCA-GTCTAAGCG
10813858 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
10813882 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:10814050 original size:195 final size:196
Alignment explanation
Indices: 10813597--10814083 Score: 649
Period size: 197 Copynumber: 2.5 Consensus size: 196
10813587 CCGGTCGGTT
* * * *
10813597 GAGCGCTCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTACATGTCTAAGCAT
1 GAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCAT
* * *
10813662 ACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCAGCAGTAGGACCAGCAGCAG
66 ACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTAAGGGTTGCAGCAGCAGGACCAGCAGCAG
* * * *
10813727 GATCGACAGCACGCAAAGGGTGACCGAACTGATCCCCGGCTTGCGTATTCTACCTCTCCGACCGA
131 GATCGACAGCACGC-AAGGGGGACCGAACCGATCCCCGACTTACGTATTCTACCTCTCCGACCGA
10813792 CC
195 CC
* * * *
10813794 GAGTGCCCACACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCGT
1 GAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCAT
10813859 ACGGAGTTCATTCCCAGTCTAAGATCAGA-TCGGA-TCAAGGGTTGCAGCAGCAGGACCAGCAGC
66 ACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACT-AAGGGTTGCAGCAGCAGGACCAGCAGC
* ** * * * *
10813922 ATGATCGGTAGCATGC-AGGGGGATCGAGCCGATCCCCGACTTACGTATTCTACCTCTCCGACTG
129 AGGATCGACAGCACGCAAGGGGGACCGAACCGATCCCCGACTTACGTATTCTACCTCTCCGACCG
*
10813986 ACT
194 ACC
** * * *
10813989 GAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGACATACGGAGTTCA-TCCCCAGTCTAAGCA
1 GAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAC-GTCTAAGCA
*
10814053 TACGGAGTTCATTCCCAGTCTACGATCAGAC
65 TACGGAGTTCATTCCCAGTCTAAGATCAGAC
10814084 CAGCCTGAGG
Statistics
Matches: 253, Mismatches: 33, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
194 4 0.02
195 122 0.48
196 2 0.01
197 125 0.49
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.23
Consensus pattern (196 bp):
GAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTAAGGGTTGCAGCAGCAGGACCAGCAGCAG
GATCGACAGCACGCAAGGGGGACCGAACCGATCCCCGACTTACGTATTCTACCTCTCCGACCGAC
C
Found at i:10814061 original size:26 final size:26
Alignment explanation
Indices: 10814025--10814074 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
10814015 TTGACTTAGA
10814025 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
10814051 CATACGGAGTTCATTCCCAGTCTA
1 CATACGGAGTTCATCCCCAGTCTA
10814075 CGATCAGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:10814097 original size:195 final size:195
Alignment explanation
Indices: 10813597--10814097 Score: 639
Period size: 195 Copynumber: 2.6 Consensus size: 195
10813587 CCGGTCGGTT
* * * *
10813597 GAGCGCTCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTACATGTCTAAGCAT
1 GAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCAT
* * *
10813662 ACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCAGCAGTAGGACCAGCAGCAG
66 ACGGAGTTCATTCCCAGTCTAAGATCAGAC-CGACTGAGGGTTGCAGCAGCAGGACCAGCAGCAG
* * * *
10813727 GATCGACAGCACGCAAAGGGTGACCGAACTGATCCCCGGCTTGCGTATTCTACCTCTCCGACCGA
130 GATCGACAGCACGC-AAGGGGGACCGAACCGATCCCCGACTTACGTATTCTACCTCTCCGACCGA
10813792 CC
194 CC
* * * *
10813794 GAGTGCCCACACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCGT
1 GAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCAT
* *
10813859 ACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-TCAAGGGTTGCAGCAGCAGGACCAGCAGCA
66 ACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGACT-GAGGGTTGCAGCAGCAGGACCAGCAGCA
* ** * * * *
10813923 TGATCGGTAGCATGC-AGGGGGATCGAGCCGATCCCCGACTTACGTATTCTACCTCTCCGACTGA
129 GGATCGACAGCACGCAAGGGGGACCGAACCGATCCCCGACTTACGTATTCTACCTCTCCGACCGA
*
10813987 CT
194 CC
** * * *
10813989 GAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGACATACGGAGTTCA-TCCCCAGTCTAAGCA
1 GAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAC-GTCTAAGCA
* *
10814053 TACGGAGTTCATTCCCAGTCTACGATCAGACCAGCCTGAGGGTTG
65 TACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACTGAGGGTTG
10814098 TGGAAGTGAG
Statistics
Matches: 263, Mismatches: 36, Indels: 12
0.85 0.12 0.04
Matches are distributed among these distances:
194 5 0.02
195 130 0.49
196 2 0.01
197 125 0.48
198 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (195 bp):
GAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCGACTGAGGGTTGCAGCAGCAGGACCAGCAGCAGG
ATCGACAGCACGCAAGGGGGACCGAACCGATCCCCGACTTACGTATTCTACCTCTCCGACCGACC
Found at i:10814348 original size:158 final size:159
Alignment explanation
Indices: 10814050--10814393 Score: 401
Period size: 158 Copynumber: 2.2 Consensus size: 159
10814040 CCCAGTCTAA
* * * * **
10814050 GCATACGGAGTTCATTCCCAGTCTACGATCAGACCAGCCTGAGGGTTGTGGAAGTGAGACCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAAGGTTGTGGAAGAGAGACCGACA
* * * * ** *
10814115 GCATGCAGAGGGGGACTGAGCTGATCCCCGGCTTGGCCATTATGCCTCTTCGGTCGGTTCAGCGC
66 ACACGCAGAGGGGGACCGAGCTGATCCCCGGCTTGGCCATTATGCCTCTCCGACCGGCTCAGCGC
*
10814180 CCGCACGCTCGTTTCGT-GAGTTGGCTTAT
131 CCGCACGCTCGTTTCGTGGA-TTGGCTTAG
* * * *
10814209 GCATACAGAGTTAATTCCCAGTCTAAGATCAGACCAGACTGAAGGTTGTGGCAGCAG-GATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAAGGTTGTGGAAG-AGAGACCGAC
* * * * *
10814273 AACACGTAG-GGGGGACCGGGCTTATCCCCGGCTTGTG-CATTCTGCCTCTCCGACCGGCTGAGC
65 AACACGCAGAGGGGGACCGAGCTGATCCCCGGCTTG-GCCATTATGCCTCTCCGACCGGCTCAGC
10814336 GCCCGCACGCTCGTTTCGTGGATTGGCTTAG
129 GCCCGCACGCTCGTTTCGTGGATTGGCTTAG
*
10814367 GCATATGGAGTTCATT-CCACGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
10814394 CATATGGAGT
Statistics
Matches: 155, Mismatches: 26, Indels: 9
0.82 0.14 0.05
Matches are distributed among these distances:
157 3 0.02
158 90 0.58
159 61 0.39
160 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAAGGTTGTGGAAGAGAGACCGACA
ACACGCAGAGGGGGACCGAGCTGATCCCCGGCTTGGCCATTATGCCTCTCCGACCGGCTCAGCGC
CCGCACGCTCGTTTCGTGGATTGGCTTAG
Found at i:10814403 original size:26 final size:26
Alignment explanation
Indices: 10814367--10814419 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10814357 ATTGGCTTAG
10814367 GCATATGGAGTTCATT-CCACGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
10814393 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
10814419 G
1 G
10814420 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:10815073 original size:26 final size:26
Alignment explanation
Indices: 10815044--10815096 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10815034 GTTGACTTAG
10815044 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
10815070 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
10815096 G
1 G
10815097 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:10815698 original size:161 final size:160
Alignment explanation
Indices: 10815226--10815872 Score: 626
Period size: 159 Copynumber: 4.1 Consensus size: 160
10815216 GGATTGACAT
* * * * *
10815226 GTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGA-CTGGCAGCATGCAGAGGGGGACTG
1 GTCTAAGCACCAGATCGGACCGAGGGTTGTGGCAGCAGGATC-GACAGCACGCAGAGGGGGACCG
* * * * * * * * *
10815289 GGTCAATCCCCGGCTTGTGCATTATGCCTCTCCGGTCGGCTTAACGCCCGTACGCTCGTTTCATG
65 AGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGT-
*
10815354 GGGTTGATTTAGGCATACAGAGTTCATTCCCA
129 GGGTTGACTTAGGCATACAGAGTTCATTCCCA
* * * * * * * * *
10815386 ATCTAAG-ATCGGACCGGACTGAGGGTTATGACAGTAGGATC-AGCAGCACGCA-TGGGGGACCG
1 GTCTAAGCACCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCG
* * * * ** * ** *
10815448 GGTCGATCCCCGGCTTGCGTATTCTGCCTCTCCGGTCGGCTGATTGCTCGCACGCTTGTTTCGCG
65 AGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTG
* **
10815513 GGTTGGCTTAGGCATAGGGAGTTCATT-CCA
130 GGTTGACTTAGGCATACAGAGTTCATTCCCA
* * **
10815543 TGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGTGGTAGTGGGATCGACAGCACGCAGAGGGGGAC
1 -GTCTAAGCACCAGATCGGACCGAGGG-T-TGTGGCAGCAGGATCGACAGCACGCAGAGGGGGAC
** * * * *
10815607 CGAGCCGATCCATGGCTTGCGCATTATGCTTCTTCGGTCGGCTCAGCGCCCGCACACTCATTTCG
63 CGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCG
* *
10815672 TGGGTTGATTTATGCATACAGAGTTCATTCCCA
128 TGGGTTGACTTAGGCATACAGAGTTCATTCCCA
* * * *
10815705 GTCTAAG-ATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAGTGGGGGATCGA
1 GTCTAAGCACCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGA
** * * * * * *
10815769 GCCGATCCTTGGCTGGCGCATTCTACCTCTCTGATCGGCTGAGTGCCCGCACGCTCATTTCGTGG
66 GCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGG
*
10815834 GTTGACTTAGGCATACAGAGTTCATCCCCA
131 GTTGACTTAGGCATACAGAGTTCATTCCCA
10815864 GTCTAAGCA
1 GTCTAAGCA
10815873 TATGGAGTTC
Statistics
Matches: 391, Mismatches: 84, Indels: 24
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 40 0.10
159 185 0.47
160 59 0.15
161 101 0.26
162 3 0.01
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.24
Consensus pattern (160 bp):
GTCTAAGCACCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGA
GCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGG
GTTGACTTAGGCATACAGAGTTCATTCCCA
Found at i:10815845 original size:320 final size:319
Alignment explanation
Indices: 10815223--10815871 Score: 795
Period size: 320 Copynumber: 2.0 Consensus size: 319
10815213 CATGGATTGA
* * *
10815223 CATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACTGGCAGCATGCAGAGGGGGACT
1 CATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACTGACAGCACGCAGAGGGGGACC
* * * * * * * *
10815288 GGGTCAATCCCCGGCTTGTGCATTATGCCTCTCCGGTCGGCTTAACGCCCGTACGCTCGTTTCAT
66 GAGCCAATCCACGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAACGCCCGCACACTCATTTCAT
* *
10815353 GGGGTTGATTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACTGAGGGTTATGAC
131 GGGGTTGATTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTATGAC
* * * * * * *
10815418 AGTAGGATCAGCAGCACGCATGGGGGACCGGGTCGATCCCCGGCTTGCGTATTCTGCCTCTCCGG
196 AGCAGGATCAGCAGCACGCATGGGGGACCGAGCCGATCCCCGGCTGGCGCATTCTACCTCTCCGA
* * ** * ** *
10815483 TCGGCTGATTGCTCGCACGCTTGTTTCGCGGGTTGGCTTAGGCATAGGGAGTTCAT-TC
261 TCGGCTGAGTGCCCGCACGCTCATTTCGCGGGTTGACTTAGGCATACAGAGTTCATCCC
* *
10815541 CATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGTGGTAGTGGGA-TCGACAGCACGCAGAGGGGG
1 CATGTCTAAGCCCCAGTCGGACCGAGGG-T-TGTGGCAGCGGGACT-GACAGCACGCAGAGGGGG
* * * * *
10815605 ACCGAGCCGATCCATGGCTTGCGCATTATGCTTCTTCGGTCGGCTCAGCGCCCGCACACTCATTT
63 ACCGAGCCAATCCACGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAACGCCCGCACACTCATTT
* * * * *
10815670 CGT-GGGTTGATTTATGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGT
128 CATGGGGTTGATTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTAT
* * * **
10815734 GGCAGCAGGATC-GATAGCACGCAGTGGGGGATCGAGCCGATCCTTGGCTGGCGCATTCTACCTC
193 GACAGCAGGATCAG-CAGCACGCA-TGGGGGACCGAGCCGATCCCCGGCTGGCGCATTCTACCTC
* *
10815798 TCTGATCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCC
256 TCCGATCGGCTGAGTGCCCGCACGCTCATTTCGCGGGTTGACTTAGGCATACAGAGTTCATCCC
10815862 CA-GTCTAAGC
1 CATGTCTAAGC
10815872 ATATGGAGTT
Statistics
Matches: 278, Mismatches: 47, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
318 29 0.10
319 75 0.27
320 171 0.62
321 3 0.01
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.24
Consensus pattern (319 bp):
CATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACTGACAGCACGCAGAGGGGGACC
GAGCCAATCCACGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAACGCCCGCACACTCATTTCAT
GGGGTTGATTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTATGAC
AGCAGGATCAGCAGCACGCATGGGGGACCGAGCCGATCCCCGGCTGGCGCATTCTACCTCTCCGA
TCGGCTGAGTGCCCGCACGCTCATTTCGCGGGTTGACTTAGGCATACAGAGTTCATCCC
Found at i:10816029 original size:184 final size:185
Alignment explanation
Indices: 10815692--10816055 Score: 446
Period size: 184 Copynumber: 2.0 Consensus size: 185
10815682 TATGCATACA
* * * * * *
10815692 GAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCA
1 GAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTGGTGGAAACAAGATCGACAGCACGCA
* *** * * * **
10815757 GTGGGGGATCGAGCCGATCCTTGGCTGGCGCATTCTACCTCTCTGATCGGCTGAGTGCCCGCACG
66 GTGGGGGACCGAGCCGATCCCCAGCTGGCGCATTCTACCTCTCCGACCAGCTGAGCACCCGCACG
* *
10815822 CTCATTTCGTGGGTTGACTTAGGCATACA-GAGTTCATCCCCA-GTCTAAGCATATG
131 ATCATTTCGTGGGATGACTTAGGCATA-AGGAGTTCAT-CCCATGTCTAAGCATATG
* * * *
10815877 GAGTTCATTCCCAATCTAAGATCGGATCGGACTGAGGGTGGTGGAAACAAGATTGGCAGCACGCA
1 GAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTGGTGGAAACAAGATCGACAGCACGCA
* * *
10815942 G-GGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTCCCTCTCCGACCAGCTGAGCACCCGCACG
66 GTGGGGGACCGAGCCGATCCCCAGCTGGCGCATTCTACCTCTCCGACCAGCTGAGCACCCGCACG
* * *
10816006 ATCGTTTCGTGGGATGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
131 ATCATTTCGTGGGATGACTTAGGCATAAGGAGTTCATCCCATGTCTAAGC
10816056 CCCAGCAGGA
Statistics
Matches: 150, Mismatches: 27, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
183 4 0.03
184 90 0.60
185 56 0.37
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (185 bp):
GAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTGGTGGAAACAAGATCGACAGCACGCA
GTGGGGGACCGAGCCGATCCCCAGCTGGCGCATTCTACCTCTCCGACCAGCTGAGCACCCGCACG
ATCATTTCGTGGGATGACTTAGGCATAAGGAGTTCATCCCATGTCTAAGCATATG
Found at i:10816346 original size:501 final size:504
Alignment explanation
Indices: 10815366--10816388 Score: 1344
Period size: 501 Copynumber: 2.0 Consensus size: 504
10815356 GTTGATTTAG
* * ** *
10815366 GCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACTGAGGGTTATGACAGTAGGATCAGCA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACTGAGGGTGATGACAACAAGATCAGCA
* * * * * ** * *** *
10815431 GCACGCATGGGGGACCGGGTCGATCCCCGGCTTGCGTATTCTGCCTCTCCGGTCGGCTGATTGCT
66 GCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTCCCTCTCCGACCAGCTGAGCACC
* * * *
10815496 CGCACGCTTGTTTCGCGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
131 CGCACGATCGTTTCGCGGGATGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
* * *
10815561 ACCGAGGGTTGTGTGGTAGTGGGATCGACAGCACGCAGAGGGGGACCGAGCCGATCCATGGCTTG
196 ACCGAGGGTTGTGTGGCAGGGGGATCGACAGCACGCAGAGGGGGACCGAGCCGATCCATAGCTTG
* * * * * * * *
10815626 CGCATTATGCTTCTTCGGTCGGCTCAGCGCCCGCACACTCATTTCGTGGGTTGATTTATGCATAC
261 CGCATTATGCCTCTCCGGCCGGCTCAACGCCCACACACTCATTTCGAGGGTTGACTTAGGCATAC
* * *
10815691 AGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGC
326 AGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGC
* * * * * *
10815756 AGTGGGGGATCGAGCCGATCCTTGGCTGGCGCATTCTACCTCTCTGATCGGCTGAGTGCCCGCAC
391 AGTGGGGGATCGAGCCGATCCCTGGCTGACGCATTCTACCTATCCGATCGGCCGACTGCCCGCAC
10815821 GCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAA
456 GCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAT-CCCATGTCTAA
* * * **
10815870 GCATATGGAGTTCATTCCCAATCTAAGATCGGATCGGACTGAGGGTGGTGGA-AACAAGATTGGC
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACTGAGGGTGAT-GACAACAAGATCAGC
10815934 AGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTCCCTCTCCGACCAGCTGAGCAC
65 AGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTCCCTCTCCGACCAGCTGAGCAC
*
10815999 CCGCACGATCGTTTCGTGGGATGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAG-CA
130 CCGCACGATCGTTTCGCGGGATGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTC-
* ** * *
10816063 GGACCGAGGG-T-TGTGGCAGCGGGGCT-GGTAGCACGCAGAGGGGG-TCGGGCCGATCC-TCAG
194 GGACCGAGGGTTGTGTGGCAG-GGGGATCGACAGCACGCAGAGGGGGACCGAGCCGATCCAT-AG
*
10816123 CTTGCGCATTATGCCTCTCCGGCCGGCTCAACGCCCACACGCTCATTTCGAGGGTTGACTTAGGC
257 CTTGCGCATTATGCCTCTCCGGCCGGCTCAACGCCCACACACTCATTTCGAGGGTTGACTTAGGC
* * *
10816188 ATACGGAGTTCATTCCCTGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAAGATCGACAGC
322 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAAGATCGACAGC
* * ** * *
10816253 ACGTAG-GGGGGAATCGGGTTGATCCCTGGCTTACGCATTCTGCCTATCCGATCGGCCGACTGCC
387 ACGCAGTGGGGG-ATCGAGCCGATCCCTGGCTGACGCATTCTACCTATCCGATCGGCCGACTGCC
* * *
10816317 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
451 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAA
10816371 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
10816389 ATGTCTAAGC
Statistics
Matches: 447, Mismatches: 66, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
500 9 0.02
501 236 0.53
502 23 0.05
503 6 0.01
504 171 0.38
505 2 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (504 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACTGAGGGTGATGACAACAAGATCAGCA
GCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTCCCTCTCCGACCAGCTGAGCACC
CGCACGATCGTTTCGCGGGATGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
ACCGAGGGTTGTGTGGCAGGGGGATCGACAGCACGCAGAGGGGGACCGAGCCGATCCATAGCTTG
CGCATTATGCCTCTCCGGCCGGCTCAACGCCCACACACTCATTTCGAGGGTTGACTTAGGCATAC
AGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGC
AGTGGGGGATCGAGCCGATCCCTGGCTGACGCATTCTACCTATCCGATCGGCCGACTGCCCGCAC
GCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAA
Found at i:10816348 original size:159 final size:157
Alignment explanation
Indices: 10815870--10816371 Score: 510
Period size: 158 Copynumber: 3.2 Consensus size: 157
10815860 CCCAGTCTAA
* * * * * * * *
10815870 GCATATGGAGTTCATTCCCA-ATCTAAGATCGGATCGGACTGAGGGTGGTGGAAACAAGATTGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAAGATCGGC
* * * * * *
10815934 AGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTCCCTCTCCGACCAGCTGAGCAC
65 AGCACGCAGGGGGGATCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGACCGGCCGA-CGC
* *
10815999 CCGCACGATCGTTTCGTGGGATGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * **
10816028 GCATAAGGAGTTCATTCCATGTCTAAG-CCCCAGCAGGACCGAGGGTTGTGGCAGC-GGGGCTGG
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-CCGGACCGAGGGTTGTGGCAGCAAGATC-GG
* * * *
10816091 TAGCACGCAGAGGGGG-TCGGGCCGAT-CCTCAGCTTGCGCATTATGCCTCTCCGGCCGGCTCAA
64 CAGCACGCAG-GGGGGATCGGGCCGATCCCT-AGCTTGCGCATTCTGCCTCTCCGACCGGC-CGA
* * * *
10816154 CGCCCACACGCTCATTTCGAGGGTTGACTTAG
126 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
10816186 GCATACGGAGTTCATTCCCTGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAAGATCGGCA
* ** * * * *
10816251 GCACGTAGGGGGGAATCGGGTTGATCCCTGGCTTACGCATTCTGCCTATCCGATCGGCCGACTGC
66 GCACGCAGGGGGG-ATCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGACCGGCCGAC-GC
10816316 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
10816345 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
10816372 CATACGGAGT
Statistics
Matches: 274, Mismatches: 58, Indels: 23
0.77 0.16 0.06
Matches are distributed among these distances:
157 13 0.05
158 165 0.60
159 93 0.34
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAAGATCGGCA
GCACGCAGGGGGGATCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGACCGGCCGACGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:10816421 original size:26 final size:26
Alignment explanation
Indices: 10816345--10816414 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
10816335 GTTGGCTTAG
*
10816345 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
10816371 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
10816397 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
10816415 CAGTCTATGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:10816551 original size:210 final size:211
Alignment explanation
Indices: 10816186--10816577 Score: 547
Period size: 210 Copynumber: 1.9 Consensus size: 211
10816176 GTTGACTTAG
* *
10816186 GCATACGGAGTTCATTCCCTGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTAGCAGCAAGATCGACA
* * * * *
10816251 GCACGTAGGGGGGAATCGGGTTGATCCCTGGCTTACGCATTCTGCCTATCCGATCGGCCGACTGC
66 GCACGTAGGGGGGAACCGAGTCGATCCCCGGCTAACGCATTCTGCCTATCCGATCGGCCGACTGC
* *
10816316 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAG
131 CCGCACGCTCATTTCGTGCGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAG
10816381 TTCATTCCATGTCTAA
196 TTCATTCCATGTCTAA
* * * * * **
10816397 GCATACGGAGTTCATTCCCAGTCTATGATTGGACCGGACCGAGTGTTGTAGTAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTAGCAGCAAGATCGACA
* * * *
10816462 GTACGTAGGGTGG-ACCGAGTCGATCCCCGGC-AAGCGCATTCTGCCTCTCCGATCGGCTGAGC-
66 GCACGTAGGGGGGAACCGAGTCGATCCCCGGCTAA-CGCATTCTGCCTATCCGATCGGCCGA-CT
* *
10816524 GCTCGCACGCTCATTTCGTGCGTTGGCTTAGGCATTCAGAGTTCATTCCATGTC
129 GCCCGCACGCTCATTTCGTGCGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
10816578 AATGCCCCCG
Statistics
Matches: 157, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
209 1 0.01
210 88 0.56
211 68 0.43
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (211 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTAGCAGCAAGATCGACA
GCACGTAGGGGGGAACCGAGTCGATCCCCGGCTAACGCATTCTGCCTATCCGATCGGCCGACTGC
CCGCACGCTCATTTCGTGCGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAG
TTCATTCCATGTCTAA
Found at i:10816762 original size:26 final size:26
Alignment explanation
Indices: 10816726--10816778 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10816716 GTTGACTTAG
10816726 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
10816752 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
10816778 G
1 G
10816779 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:10817198 original size:158 final size:159
Alignment explanation
Indices: 10816921--10817549 Score: 647
Period size: 159 Copynumber: 4.0 Consensus size: 159
10816911 TAAGCCCCAG
*** * * * * * * *
10816921 TCGGACCGAGGGTTGTGGCAACGGGA-CTGGCAGCATGCAGAGGGGGACTGGGTCAATCCCCGGC
1 TCGGACCGAGGGTTGTGGCAGTAGGATC-GACAGCACGCAGTGGGGGACCGAGCCGATCCCCGGC
* * * * * * *
10816985 TTGTGCATTATGCCTCTCCGGTCGGCTTAACGCCCGTACGCTCGTTTCATGGGTTGATTTAGGCA
65 TTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
* *
10817050 TACAGAGTTCATTCCCAATCTAAGATCGGA
130 TACAGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * *
10817080 CCGGACTGAGGGTTATGACAGTAGGATC-AGCAGCACGCA-TGGGGGACCGGGTCGATCCCCGGC
1 TCGGACCGAGGGTTGTGGCAGTAGGATCGA-CAGCACGCAGTGGGGGACCGAGCCGATCCCCGGC
* * ** * ** * *
10817143 TTGCGTATTCTGCCTCTCCGGTCGGCTGATTGCTCGCACGCTTGTTTCGCGGGTTGGCTTAGGCA
65 TTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
** **
10817208 TAGGGAGTTCATT-CCATGTCTAAGCCCCAG-
130 TACAGAGTTCATTCCCA-GTCTAAG-ATCAGA
* * * **
10817238 TCGGACCGAGGGTTGTGGTAGTGGGATCGACAGCACGCAGAGGGGGACCGAGCCGATCCATGGCT
1 TCGGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGTGGGGGACCGAGCCGATCCCCGGCT
* * * * * *
10817303 TGCGCATTATGCTTCTTCGGTCGGCTCAGCGCCCGCACACTCATTTCGTGGGTTGATTTATGCAT
66 TGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
10817368 ACAGAGTTCATTCCCAGTCTAAGATCAGA
131 ACAGAGTTCATTCCCAGTCTAAGATCAGA
* * * **
10817397 TCGGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAGTGGGGGATCGAGCCGATCCTTGGCT
1 TCGGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGTGGGGGACCGAGCCGATCCCCGGCT
* * * * *
10817462 TGCGCATTCTACCTCTCTGATCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
66 TGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
*
10817527 ACAGAGTTCATCCCCAGTCTAAG
131 ACAGAGTTCATTCCCAGTCTAAG
10817550 CATATGGAGT
Statistics
Matches: 382, Mismatches: 80, Indels: 16
0.80 0.17 0.03
Matches are distributed among these distances:
157 3 0.01
158 124 0.32
159 251 0.66
160 4 0.01
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
TCGGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGTGGGGGACCGAGCCGATCCCCGGCT
TGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
ACAGAGTTCATTCCCAGTCTAAGATCAGA
Found at i:10817619 original size:185 final size:185
Alignment explanation
Indices: 10817371--10817735 Score: 446
Period size: 185 Copynumber: 2.0 Consensus size: 185
10817361 TATGCATACA
* * * * * *
10817371 GAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCA
1 GAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTGGTGGAAACAAGATCGACAGCACGCA
* * *** * * * **
10817436 GTGGGGGATCGAGCCGATCCTTGGCTTGCGCATTCTACCTCTCTGATCGGCTGAGTGCCCGCACG
66 GGGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCAGCTGAGCACCCGCACG
* * *
10817501 CTCATTTCGTGGGTTGACTTAGGCATACA-GAGTTCATCCCCA-GTCTAAGCATATG
131 ATCATTTCGTGGGATGACTTAAGCATA-AGGAGTTCAT-CCCATGTCTAAGCATATG
* * * *
10817556 GAGTTCATTCCCAATCTAAGATCGGATCGGACTGAGGGTGGTGGAAACAAGATTGGCAGCACGCA
1 GAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTGGTGGAAACAAGATCGACAGCACGCA
* *
10817621 GGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTCCCTCTCCGACCAGCTGAGCACCCGCACG
66 GGGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCAGCTGAGCACCCGCACG
* * *
10817686 ATCGTTTCGTGGGATGGCTTAAGCATAAGGAGTTCATTCCATGTCTAAGC
131 ATCATTTCGTGGGATGACTTAAGCATAAGGAGTTCATCCCATGTCTAAGC
10817736 CCCAGCAGGA
Statistics
Matches: 150, Mismatches: 28, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
184 4 0.03
185 146 0.97
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (185 bp):
GAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTGGTGGAAACAAGATCGACAGCACGCA
GGGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCAGCTGAGCACCCGCACG
ATCATTTCGTGGGATGACTTAAGCATAAGGAGTTCATCCCATGTCTAAGCATATG
Found at i:10817876 original size:158 final size:158
Alignment explanation
Indices: 10817584--10818053 Score: 455
Period size: 158 Copynumber: 3.0 Consensus size: 158
10817574 AGATCGGATC
* * * * * * *
10817584 GGACTGAGGGTGGTGGAAACAAGATTGGCAGCACGCAGGGGGGGACCGGGCCGATCCCCAGCTTG
1 GGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCA-GGGGGGATCGGGCCGAT-CCCAGCTTG
* * * * * * * * *
10817649 CGCATTCTCCCTCTCCGACCAGCTGAGCACCCGCACGATCGTTTCGTGGGATGGCTTAAGCATAA
64 CGCATTCTGCCTCTCCGACCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
*
10817714 GGAGTTCATTCCATGTCTAAGCCCCAG-CA
129 GGAGTTCATTCCATGTCTAAGCACCAGACA
* ** ** *
10817743 GGACCGAGGGTTGTGGCAGC-GGGGCTGGTAGCACGCAGAGGGGG-TGGGGCCGATCCTCAGCTT
1 GGACCGAGGGTTGTGGCAGCAAGATC-GACAGCACGCAG-GGGGGATCGGGCCGATCC-CAGCTT
* * * * * *
10817806 GCGCATTATGCCTCTCCGGCCGGCTCAACGCCCACACGCTCATTTCGAGGGTTGACTTAGGCATA
63 GCGCATTCTGCCTCTCCGACCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
* * * *
10817871 CGGAGTTCATTCCCTGTCTAAG-ATCGGACC
128 CGGAGTTCATTCCATGTCTAAGCACCAGACA
* ** * *
10817901 GGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGTAGGGGGGAATCGGGTTGATCCCTGGCTTA
1 GGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCAGGGGGG-ATCGGGCCGATCCC-AGCTTG
* * *
10817966 CGCATTCTGCCTATCCGATCGGC-CGACTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
64 CGCATTCTGCCTCTCCGACCGGCTCAAC-GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
*
10818030 CAGAGTTCATTCCATGTCTAAGCA
128 CGGAGTTCATTCCATGTCTAAGCA
10818054 TACGGAGTTC
Statistics
Matches: 248, Mismatches: 53, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
157 9 0.04
158 121 0.49
159 117 0.47
160 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.21
Consensus pattern (158 bp):
GGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCAGCTTGCG
CATTCTGCCTCTCCGACCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAAGCACCAGACA
Found at i:10817999 original size:502 final size:502
Alignment explanation
Indices: 10817047--10818068 Score: 1338
Period size: 502 Copynumber: 2.0 Consensus size: 502
10817037 GTTGATTTAG
* * ** *
10817047 GCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACTGAGGGTTATGACAGTAGGATCAGCA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACTGAGGGTGATGACAACAAGATCAGCA
* * * * * ** * *** *
10817112 GCACGCATGGGGGACCGGGTCGATCCCCGGCTTGCGTATTCTGCCTCTCCGGTCGGCTGATTGCT
66 GCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTCCCTCTCCGACCAGCTGAGCACC
* * * * *
10817177 CGCACGCTTGTTTCGCGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
131 CGCACGATCGTTTCGCGGGATGGCTTAAGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
* * *
10817242 ACCGAGGGTTGTGGTAGTGGGATCGACAGCACGCAGAGGGGGACCGAGCCGATCCATGGCTTGCG
196 ACCGAGGGTTGTGGCAGGGGGATCGACAGCACGCAGAGGGGGACCGAGCCGATCCATAGCTTGCG
* * * * * * * *
10817307 CATTATGCTTCTTCGGTCGGCTCAGCGCCCGCACACTCATTTCGTGGGTTGATTTATGCATACAG
261 CATTATGCCTCTCCGGCCGGCTCAACGCCCACACACTCATTTCGAGGGTTGACTTAGGCATACAG
* * *
10817372 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAG
326 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCAG
* * * * * *
10817437 TGGGGGATCGAGCCGATCCTTGGCTTGCGCATTCTACCTCTCTGATCGGCTGAGTGCCCGCACGC
391 TGGGGGATCGAGCCGATCCCTGGCTTACGCATTCTACCTATCCGATCGGCCGACTGCCCGCACGC
10817502 TCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAA
456 TCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAT-CCCATGTCTAA
* * * **
10817549 GCATATGGAGTTCATTCCCAATCTAAGATCGGATCGGACTGAGGGTGGTGGA-AACAAGATTGGC
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACTGAGGGTGAT-GACAACAAGATCAGC
10817613 AGCACGCAGGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTCCCTCTCCGACCAGCTGAGCA
65 AGCACGCA-GGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTCCCTCTCCGACCAGCTGAGCA
*
10817678 CCCGCACGATCGTTTCGTGGGATGGCTTAAGCATAAGGAGTTCATTCCATGTCTAAGCCCCAG-C
129 CCCGCACGATCGTTTCGCGGGATGGCTTAAGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTC
* ** ** *
10817742 AGGACCGAGGGTTGTGGCAGCGGGGCT-GGTAGCACGCAGAGGGGG-TGGGGCCGATCC-TCAGC
194 -GGACCGAGGGTTGTGGCAG-GGGGATCGACAGCACGCAGAGGGGGACCGAGCCGATCCAT-AGC
*
10817804 TTGCGCATTATGCCTCTCCGGCCGGCTCAACGCCCACACGCTCATTTCGAGGGTTGACTTAGGCA
256 TTGCGCATTATGCCTCTCCGGCCGGCTCAACGCCCACACACTCATTTCGAGGGTTGACTTAGGCA
* * *
10817869 TACGGAGTTCATTCCCTGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAAGATCGACAGCA
321 TACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAAGATCGACAGCA
* * ** *
10817934 CGTAG-GGGGGAATCGGGTTGATCCCTGGCTTACGCATTCTGCCTATCCGATCGGCCGACTGCCC
386 CGCAGTGGGGG-ATCGAGCCGATCCCTGGCTTACGCATTCTACCTATCCGATCGGCCGACTGCCC
* * *
10817998 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
450 GCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAA
10818051 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
10818069 ATGTCTAAGC
Statistics
Matches: 446, Mismatches: 67, Indels: 14
0.85 0.13 0.03
Matches are distributed among these distances:
501 9 0.02
502 296 0.66
503 137 0.31
504 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (502 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACTGAGGGTGATGACAACAAGATCAGCA
GCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTCCCTCTCCGACCAGCTGAGCACC
CGCACGATCGTTTCGCGGGATGGCTTAAGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
ACCGAGGGTTGTGGCAGGGGGATCGACAGCACGCAGAGGGGGACCGAGCCGATCCATAGCTTGCG
CATTATGCCTCTCCGGCCGGCTCAACGCCCACACACTCATTTCGAGGGTTGACTTAGGCATACAG
AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCAG
TGGGGGATCGAGCCGATCCCTGGCTTACGCATTCTACCTATCCGATCGGCCGACTGCCCGCACGC
TCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAA
Found at i:10818036 original size:159 final size:157
Alignment explanation
Indices: 10817556--10818051 Score: 473
Period size: 159 Copynumber: 3.1 Consensus size: 157
10817546 TAAGCATATG
* * * * * * *
10817556 GAGTTCATTCCCA-ATCTAAGATCGGATCGGACTGAGGGTGGTGGAAACAAGATTGGCAGCACGC
1 GAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAAGATCGGCAGCACGC
* * * * * *
10817620 AGGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTCCCTCTCCGACCAGCTGAGCACCCGCAC
65 A-GGGGGGATCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGACCGGCCGA-CGCCCGCAC
* * *
10817685 GATCGTTTCGTGGGATGGCTTAAGCATA-A
128 GCTCGTTTCGTGGGTTGGCTTAGGCATACA
* ** * * ** *
10817714 GGAGTTCATTCCATGTCTAAG-CCCCAGCAGGACCGAGGGTTGTGGCAGC-GGGGCTGGTAGCAC
1 -GAGTTCATTCCATGTCTAAGATCGGA-CCGGACCGAGGGTTGTGGCAGCAAGATC-GGCAGCAC
* * * * *
10817777 GCAGAGGGGG-TGGGGCCGAT-CCTCAGCTTGCGCATTATGCCTCTCCGGCCGGCTCAACGCCCA
63 GCAG-GGGGGATCGGGCCGATCCCT-AGCTTGCGCATTCTGCCTCTCCGACCGGC-CGACGCCCG
* * * *
10817840 CACGCTCATTTCGAGGGTTGACTTAGGCATACG
125 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACA
* * *
10817873 GAGTTCATTCCCTGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGTA
1 GAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAAGATCGGCAGCACGCA
** * * * *
10817938 GGGGGGAATCGGGTTGATCCCTGGCTTACGCATTCTGCCTATCCGATCGGCCGACTGCCCGCACG
66 GGGGGG-ATCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGACCGGCCGAC-GCCCGCACG
10818003 CTCGTTTCGTGGGTTGGCTTAGGCATACA
129 CTCGTTTCGTGGGTTGGCTTAGGCATACA
10818032 GAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
10818052 CATACGGAGT
Statistics
Matches: 264, Mismatches: 60, Indels: 26
0.75 0.17 0.07
Matches are distributed among these distances:
157 7 0.03
158 121 0.46
159 133 0.50
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
GAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAAGATCGGCAGCACGCA
GGGGGGATCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGACCGGCCGACGCCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACA
Found at i:10818101 original size:26 final size:26
Alignment explanation
Indices: 10818025--10818094 Score: 122
Period size: 26 Copynumber: 2.7 Consensus size: 26
10818015 GTTGGCTTAG
*
10818025 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
10818051 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
10818077 GCATACGGAGTGCATTCC
1 GCATACGGAGTTCATTCC
10818095 CAGTCTATGA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:10818231 original size:210 final size:211
Alignment explanation
Indices: 10817866--10818257 Score: 538
Period size: 210 Copynumber: 1.9 Consensus size: 211
10817856 GTTGACTTAG
* * *
10817866 GCATACGGAGTTCATTCCCTGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAAGATCGACA
1 GCATACGGAGTGCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTAGCAGCAAGATCGACA
* * * * *
10817931 GCACGTAGGGGGGAATCGGGTTGATCCCTGGCTTACGCATTCTGCCTATCCGATCGGCCGACTGC
66 GCACGTAGGGGGGAACCGAGTCGATCCCCGGCTAACGCATTCTGCCTATCCGATCGGCCGACTGC
* *
10817996 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAG
131 CCGCACGCTCATTTCGTGCGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAG
10818061 TTCATTCCATGTCTAA
196 TTCATTCCATGTCTAA
* * * * * **
10818077 GCATACGGAGTGCATTCCCAGTCTATGATTGGACCGGACCGAGTGTTGTAGTAGCAGGATCGGTA
1 GCATACGGAGTGCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTAGCAGCAAGATCGACA
* * * *
10818142 GTACGTAGGGTGG-ACCGAGTCGATCCCCGGC-AAGCGCATTCTGCCTCTCCGATCGGCTGAGC-
66 GCACGTAGGGGGGAACCGAGTCGATCCCCGGCTAA-CGCATTCTGCCTATCCGATCGGCCGA-CT
* *
10818204 GCTCGCACGCTCATTTCGTGCGTTGGCTTAGGCATTCAGAGTTCATTCCATGTC
129 GCCCGCACGCTCATTTCGTGCGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
10818258 AATGCCCCCG
Statistics
Matches: 156, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
209 1 0.01
210 88 0.56
211 67 0.43
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.25
Consensus pattern (211 bp):
GCATACGGAGTGCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTAGCAGCAAGATCGACA
GCACGTAGGGGGGAACCGAGTCGATCCCCGGCTAACGCATTCTGCCTATCCGATCGGCCGACTGC
CCGCACGCTCATTTCGTGCGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAG
TTCATTCCATGTCTAA
Found at i:10818444 original size:26 final size:26
Alignment explanation
Indices: 10818406--10818458 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10818396 GTTGACTTAG
10818406 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
10818432 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
10818458 G
1 G
10818459 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:10818798 original size:341 final size:349
Alignment explanation
Indices: 10818051--10818812 Score: 834
Period size: 341 Copynumber: 2.2 Consensus size: 349
10818041 CCATGTCTAA
* **
10818051 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAG-TGCATTCCCAGTCTATGATTGGACCGGA
1 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTG-ATTCCCAGTCTAAGATCAGACCGGA
* * * * ** * * * *
10818115 CCGAGTGTTGTAGTAGCAGGATCGGTAGTACGTAGGGTGGACCGAGTCGATCCCCGGCAAGCGCA
65 CCGAGGGCTGCAGCAAAAGGATCAGCAGCACGTAGGGTGGACCGAGCCGATCCCCGGCAAGCGCA
* *
10818180 TTCTGCCTCTCCGATCGGCTGAGCGCTCGCACGCTCATTTCGTGCGTTGGCTTAGGCATTCAGAG
130 TTCTGCCTCTCCGATCGGCTGAGCGCTCGCACGCTCATTTCATGCGTTGGCTTAGGCATACAGAG
10818245 TTCATTCCATGTCAATGCCCCCGCCAAACTGAGGGTTGTGGTAGCAAGACCGACAGCGGGATCAG
195 TTCATTCCATGTCAATGCCCCCGCCAAACTGAGGGTTGTGGTAGC-AG--CGACAGC--G-TCAG
* * * * * * *
10818310 CAGCACGCAGAGGGGGACTGGGCTGATCCTCAGCTTACGTATTATGCCTTTCCGACCGTCTGAGT
254 CAGCACGCAGAGGGGGACCGGGCCGATCCTCAGCTTACGCATTATGCCTCTCCGACCGGCTCAGC
* * *
10818375 GATCGCACTCTCATTCGGTGGGTTGACTTAG
319 GACCACACGCTCATTCGGTGGGTTGACTTAG
* * * *
10818406 GCATACAGAGTTCATCCCCA-GTCTAAGCATACGGGGTTCATTCCCAGTCTAAGATCAGACCGGA
1 GCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTGATTCCCAGTCTAAGATCAGACCGGA
* * **
10818470 CCGAGGGCTGCGGCAAAAGGATCAGCAGCACGTAGGG-GGATCGAGCCGATCCCCGGCTTGCGCA
65 CCGAGGGCTGCAGCAAAAGGATCAGCAGCACGTAGGGTGGACCGAGCCGATCCCCGGCAAGCGCA
* * * **
10818534 TTCTGCCTCTCTGA-CAGGCTGAGCGC-CGCACGC-CTGTTTCATGGGTTGGCTTAGGCATAGGG
130 TTCTGCCTCTCCGATC-GGCTGAGCGCTCGCACGCTC-ATTTCATGCGTTGGCTTAGGCATACAG
* * * * *
10818596 AGTTCATTCCATGTCTATGCCCCTGCCGAACTGAGGGTTGTGGCT-GC-G-G-GA-C-TGA-CAG
193 AGTTCATTCCATGTCAATGCCCCCGCCAAACTGAGGGTTGTGG-TAGCAGCGACAGCGTCAGCAG
* *** *
10818654 CACGCGGAGGGGGACCGGGCCGATCC-CTAGCTTACGCATTATGCCTCTCCGGTTGGCTCAGCGC
257 CACGCAGAGGGGGACCGGGCCGATCCTC-AGCTTACGCATTATGCCTCTCCGACCGGCTCAGCGA
*
10818718 CCACACGCTCGTTTC-GTGGGTTGACTTAG
321 CCACACGCTC-ATTCGGTGGGTTGACTTAG
* * *
10818747 GCGTACGGAGTTCATTCCATGTCTAAGCATACGGAGTTGATTCCCAGTCTAAAATCAGACTGGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTGATTCCCAGTCTAAGATCAGACCGGAC
10818812 C
66 C
10818813 AAGGTTGCCA
Statistics
Matches: 343, Mismatches: 56, Indels: 30
0.80 0.13 0.07
Matches are distributed among these distances:
340 4 0.01
341 129 0.38
342 5 0.01
346 1 0.00
347 1 0.00
348 1 0.00
351 1 0.00
352 1 0.00
353 71 0.21
354 47 0.14
355 78 0.23
356 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (349 bp):
GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTGATTCCCAGTCTAAGATCAGACCGGAC
CGAGGGCTGCAGCAAAAGGATCAGCAGCACGTAGGGTGGACCGAGCCGATCCCCGGCAAGCGCAT
TCTGCCTCTCCGATCGGCTGAGCGCTCGCACGCTCATTTCATGCGTTGGCTTAGGCATACAGAGT
TCATTCCATGTCAATGCCCCCGCCAAACTGAGGGTTGTGGTAGCAGCGACAGCGTCAGCAGCACG
CAGAGGGGGACCGGGCCGATCCTCAGCTTACGCATTATGCCTCTCCGACCGGCTCAGCGACCACA
CGCTCATTCGGTGGGTTGACTTAG
Found at i:10819791 original size:26 final size:26
Alignment explanation
Indices: 10819762--10819814 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10819752 GTTGGCTTAG
* *
10819762 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
10819788 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10819814 G
1 G
10819815 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10819958 original size:195 final size:182
Alignment explanation
Indices: 10819603--10820168 Score: 551
Period size: 195 Copynumber: 3.0 Consensus size: 182
10819593 TTTGACTTAG
* ** * * * * ***
10819603 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAACAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAAACTGAGGGTTACTGTAGCAGGATCGACA
* * ** **
10819668 GCACACATGGGGGGATCGAGCCGGTCCTTGGCTTATGCATTCTGCCTATCCGGTCGGTTGAGCGC
66 GCACACA--GGGGGATCGAGCCGATCC-CGGCTTATGCATTCTGCCTATTAGGTCGACTGAGCGC
** *
10819733 CCGCACGCTCGTTTCACGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAA
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
10819788 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCAGCAGTAGGACTAGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAAACTGAGGGTT--A-C--T--G--TAGC-
* * * *
10819853 GTAGGATCGGCAGCACACAGGAGGGATCGAGTCGATCCCGGCTTATGCATTCTGCCTTTTAGATC
56 --AGGATCGACAGCACACAGG-GGGATCGAGCCGATCCCGGCTTATGCATTCTGCCTATTAGGTC
* * * *
10819918 GACTGAGCGCCTGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTA
118 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTA
10819982 A
182 A
* *
10819983 CCATACAGAGTTCATTCCTAGTCTAAGATCAAACCAAACTGAGGGTTACTGTAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAAACTGAGGGTTACTGTAGCAGGATCGACA
* * * * ** * *
10820048 GCACGCAGTGGGGA-CCAGGCTGATCCCTGGTTTGCGCATTTTGCCTCTTAGGTCGACTGAGCGC
66 GCACACAG-GGGGATCGA-GCCGATCCC-GGCTTATGCATTCTGCCTATTAGGTCGACTGAGCGC
* * *
10820112 CCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
10820167 GC
1 GC
10820169 CCCAGCCAGA
Statistics
Matches: 315, Mismatches: 48, Indels: 37
0.79 0.12 0.09
Matches are distributed among these distances:
182 2 0.01
183 30 0.10
184 76 0.24
185 44 0.14
186 4 0.01
188 2 0.01
190 1 0.00
192 1 0.00
193 1 0.00
194 3 0.01
195 118 0.37
196 17 0.05
197 16 0.05
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (182 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAAACTGAGGGTTACTGTAGCAGGATCGACA
GCACACAGGGGGATCGAGCCGATCCCGGCTTATGCATTCTGCCTATTAGGTCGACTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:10819994 original size:26 final size:26
Alignment explanation
Indices: 10819958--10820008 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
10819948 TTGACTTAGG
*
10819958 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACAGAGTTCATCCCCAGTCTAAC
* *
10819984 CATACAGAGTTCATTCCTAGTCTAA
1 CATACAGAGTTCATCCCCAGTCTAA
10820009 GATCAAACCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAC
Found at i:10820371 original size:159 final size:157
Alignment explanation
Indices: 10819984--10820380 Score: 399
Period size: 159 Copynumber: 2.5 Consensus size: 157
10819974 CCAGTCTAAC
* * *
10819984 CATACAGAGTTCATTCCTAGTCTAAGATCAAACCAAACTGAGGGTTACT-GTAGCAGGATCGACA
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AACTGAGGGTTA-TGGTAGCAGGATCGACA
* ** * * * * * *
10820048 GCACGCAGTGGGGACCAGGCTGATCCCTGGTTTGCGCATTTTGCCTCTTAGGTCGACTGAGCGCC
64 GCACGCAGGGGGGACCAGGCCAATCCCTAGCTTGCACATTATGCCTCTCAGGTCGACTCAGCGCC
* * ** *
10820113 CGCACGCCCGTTTTGTGGGTTGGCTTAGG
129 CGAACGCCCATTTCATGGGTTGACTTAGG
* ** *
10820142 CATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTATGGTAGCAGGATCGAC
1 CATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCA-ACTGAGGGTTATGGTAGCAGGATCGAC
* * *
10820205 AGTACGCAGAGGGGGACC-GAGCCAAT-CCTCAGCTTGCACATTATGCCTCTCCGGTCGGCTCAG
63 AGCACGCAG-GGGGGACCAG-GCCAATCCCT-AGCTTGCACATTATGCCTCTCAGGTCGACTCAG
* * *
10820268 TGCCTGAACGCTCATTTCATGGGTTGACTTAGG
125 CGCCCGAACGCCCATTTCATGGGTTGACTTAGG
* * *
10820301 CATACGGAGTTCATTCCCAGTATAAGATCAGACCGAACTGAGGGTTGTGGTAGCAGGATCGACAA
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AACTGAGGGTTATGGTAGCAGGATCGACAG
*
10820366 CACGCAGGGAGGACC
65 CACGCAGGGGGGACC
10820381 TGGTCGGTCT
Statistics
Matches: 193, Mismatches: 36, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
157 4 0.02
158 68 0.35
159 117 0.61
160 4 0.02
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (157 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAACTGAGGGTTATGGTAGCAGGATCGACAGC
ACGCAGGGGGGACCAGGCCAATCCCTAGCTTGCACATTATGCCTCTCAGGTCGACTCAGCGCCCG
AACGCCCATTTCATGGGTTGACTTAGG
Found at i:10820717 original size:25 final size:26
Alignment explanation
Indices: 10820667--10820720 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
10820657 GTTGACTTAG
10820667 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
10820693 GCATACGGAGTTCAT-CCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
10820718 GCA
1 GCA
10820721 GCATGCAGAG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 13 0.46
26 15 0.54
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10821013 original size:159 final size:158
Alignment explanation
Indices: 10820779--10821149 Score: 449
Period size: 159 Copynumber: 2.3 Consensus size: 158
10820769 TCTTATTGGT
* *
10820779 TCAGCACCCGAACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGAT
1 TCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGAT
* * *
10820844 CAGACTGGACCGAGGGTTGCAG-TAGTAGGATCGACAGCACGCATGGTGGGACCGAGCCGATCC-
66 CAGACCGGACCAAGGGTTGCAGCT-GTAGGATCGACAGCACGCA-GGGGGGACCGAGCCGATCCT
* **
10820907 CTGACTTGCGCATTATGCCTCTTTGACCGAC
129 C-GACTTGCGCATTATACCTCTCCGACCGAC
** *
10820938 TCAGCGCCCGAACGCTCGTTTTATGGGTTGATTTAGGCATACGGAGTTCATTCCCAATCTAAGAT
1 TCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGAT
** * * * * * *
10821003 CAGACCGGACCAAGGGTTGTGGCTGTAGGATTGACAGCATGTAGGGGGGATCGGGCCGGTCCTCG
66 CAGACCGGACCAAGGGTTGCAGCTGTAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCTCG
* * * * *
10821068 GCTTGCTCATTCTACCTCTCCGATCGGC
131 ACTTGCGCATTATACCTCTCCGACCGAC
* * * *
10821096 TGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
1 TCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
10821150 ATGTCTCAGC
Statistics
Matches: 179, Mismatches: 31, Indels: 5
0.83 0.14 0.02
Matches are distributed among these distances:
158 83 0.46
159 95 0.53
160 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
TCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGAT
CAGACCGGACCAAGGGTTGCAGCTGTAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCTCG
ACTTGCGCATTATACCTCTCCGACCGAC
Found at i:10821377 original size:26 final size:26
Alignment explanation
Indices: 10821340--10821392 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10821330 GTTGACTTAG
*
10821340 GCATACGGAGTTCATCCCCAGTATAA
1 GCATACGAAGTTCATCCCCAGTATAA
* *
10821366 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTATAA
10821392 G
1 G
10821393 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTATAA
Found at i:10821387 original size:674 final size:674
Alignment explanation
Indices: 10820111--10821392 Score: 1630
Period size: 674 Copynumber: 1.9 Consensus size: 674
10820101 CGACTGAGCG
* * * * * * *
10820111 CCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
1 CCCGAACGCCCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCATATCTAAGCACCAGCC
** *
10820176 AGACCGAGGGTTATGGTAGCAGGATCGACAGTACGCAGAGGGGGACCGAGCCAATCCTCAGCTTG
66 AGACCGAGGGTTACAGTAGCAGGATCGACAGCACGCAGAGGGGGACCGAGCCAATCCTCAGCTTG
** * * *
10820241 CACATTATGCCTCTCCGGTCGGCTCAGTGCCTGAACGCTCATTTCATGGGTTGACTTAGGCATAC
131 CACATTATGCCTCTCCGACCGACTCAGCGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATAC
* **
10820306 GGAGTTCATTCCCAGTATAAGATCAGACCGAACTGAGGGTTGTGGTAGCAGGATCGACAACACGC
196 GGAGTTCATTCCCAATATAAGATCAGACCGAACCAAGGGTTGTGGTAGCAGGATCGACAACACGC
* * * * *
10820371 AGGGAGGACCTGGTCGGTCTATGACTTACGCACTCTACCTCTTCGACCAGCTGAGCGCCCGCATG
261 AGGGAGGACCGGGCCGGTCTACGACTTACGCACTCTACCTCTCCGACCAGCTGAGCGCCCGCACG
10820436 CTCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
326 CTCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
* * * *
10820501 CCAATTTAAGATCGGATCAAACCGAGGGTTGGGAAGCAGGACCAGCAGCAGGATCGATAGCACGC
391 CCAATCTAAGATCGGATCAAACCGAGGGTTCGGAAGCAGGACCAACAGCAGGATCGACAGCACGC
* * * *
10820566 AGGAGGGGATCGGGCTGATCCCTGACTTGCGCATTATGCCTCTCCAGCCGACCTGTCCAGTCGGT
456 AGGAGGGGATCGGGCCGATCCCAGACTTGCGCATTATGCCTCTCCAGCCGACCTCTCCAGTCGGC
*
10820631 TGAGCGCCCGCAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
521 TGAGCGCCCGCAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTATAAGCA
*
10820696 TACGGAGTTCATCCCAGTCTAAGCAGCATGCAGAGGAGGACCGAGCTGATCCCCAGCTTGTGCAT
586 TACGAAGTTCATCCCAGTCTAAGCAGCATGCAGAGGAGGACCGAGCTGATCCCCAGCTTGTGCAT
10820761 TATGCCTTTCTTATTGGTTCAGCA
651 TATGCCTTTCTTATTGGTTCAGCA
* *
10820785 CCCGAACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGA
1 CCCGAACGCCCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATT-CCATATCTAAGCACCAG-
** * * * * *
10820848 CTGGACCGAGGGTTGCAGTAGTAGGATCGACAGCACGCATG-GTGGGACCGAGCCGATCC-CTGA
64 CCAGACCGAGGGTTACAGTAGCAGGATCGACAGCACGCA-GAGGGGGACCGAGCCAATCCTCAG-
* ** * * *
10820911 CTTGCGCATTATGCCTCTTTGACCGACTCAGCGCCCGAACGCTCGTTTTATGGGTTGATTTAGGC
127 CTTGCACATTATGCCTCTCCGACCGACTCAGCGCCCGAACGCTCATTTCATGGGTTGACTTAGGC
* * * * *
10820976 ATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTGTGGCT-GTAGGATTGACAG
192 ATACGGAGTTCATTCCCAATATAAGATCAGACCGAACCAAGGGTTGTGG-TAGCAGGATCGACAA
* * * * * * * * * *
10821040 CATGTAGGGGGGATCGGGCCGGTCCT-CGGCTTGCTCATTCTACCTCTCCGATCGGCTGAGCGCC
256 CACGCAGGGAGGACCGGGCCGGT-CTACGACTTACGCACTCTACCTCTCCGACCAGCTGAGCGCC
** * *
10821104 CGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTCAGCATACGGAGT
320 CGCACGCTCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGT
* **** * *
10821169 TCATTCCCAGTCTAAGATCGGATTGGGCCGAGGGTTACGGCAGCAGGACCAACAGTAGGATCGAC
385 TCATTCCCAATCTAAGATCGGATCAAACCGAGGGTT-CGGAAGCAGGACCAACAGCAGGATCGAC
* * * * ** *
10821234 AGCACGCA-G-GGGGA-CTGGGCCGATCCCCAG-CTTGGGCATTCTGCCTCTTCGGTTGGCCTCT
449 AGCACGCAGGAGGGGATC-GGGCCGAT-CCCAGACTTGCGCATTATGCCTCTCCAGCCGACCTCT
* * * * *
10821295 CCGGTCGGCTGAGTGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA
512 CCAGTCGGCTGAGCGCCCGCAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
10821360 GTATAAGCATACGAAGTTCATTCCCAGTCTAAG
577 GTATAAGCATACGAAGTTCA-TCCCAGTCTAAG
10821393 ATCAGACCAG
Statistics
Matches: 512, Mismatches: 86, Indels: 20
0.83 0.14 0.03
Matches are distributed among these distances:
672 1 0.00
673 117 0.23
674 356 0.70
675 38 0.07
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (674 bp):
CCCGAACGCCCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCATATCTAAGCACCAGCC
AGACCGAGGGTTACAGTAGCAGGATCGACAGCACGCAGAGGGGGACCGAGCCAATCCTCAGCTTG
CACATTATGCCTCTCCGACCGACTCAGCGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATAC
GGAGTTCATTCCCAATATAAGATCAGACCGAACCAAGGGTTGTGGTAGCAGGATCGACAACACGC
AGGGAGGACCGGGCCGGTCTACGACTTACGCACTCTACCTCTCCGACCAGCTGAGCGCCCGCACG
CTCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
CCAATCTAAGATCGGATCAAACCGAGGGTTCGGAAGCAGGACCAACAGCAGGATCGACAGCACGC
AGGAGGGGATCGGGCCGATCCCAGACTTGCGCATTATGCCTCTCCAGCCGACCTCTCCAGTCGGC
TGAGCGCCCGCAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTATAAGCA
TACGAAGTTCATCCCAGTCTAAGCAGCATGCAGAGGAGGACCGAGCTGATCCCCAGCTTGTGCAT
TATGCCTTTCTTATTGGTTCAGCA
Found at i:10821540 original size:26 final size:26
Alignment explanation
Indices: 10821504--10821556 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10821494 GTTGGCTTAG
10821504 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCAT-TCTAA
10821530 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
10821556 G
1 G
10821557 AGTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:10822353 original size:26 final size:26
Alignment explanation
Indices: 10822319--10822371 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10822309 GTAGACTTAG
*
10822319 GCATGCGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
10822345 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
10822371 G
1 G
10822372 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10822757 original size:157 final size:155
Alignment explanation
Indices: 10822523--10823108 Score: 534
Period size: 158 Copynumber: 3.7 Consensus size: 155
10822513 TAACACGCAG
* ** * * *
10822523 AGGGGGATCGGGCCGATCCTCAGCTTGTTCATTATGCCTCTCCGACTGGCTTAACGCCCGCACAC
1 AGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGTC-GGCTGAGCGCCCGCACAC
* * * * *
10822588 TCGTTTCATGGGTTGACTTAGCCATGCTGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGG
65 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGG
* *
10822653 GTTACGGTAGTAAGATC-AGCAGCACGC
130 GTT-TGGCAGTAAGATCGA-CAGCACGC
* * * * * *
10822680 AGGGGGATCGGGCCGATCCCCGGTTTGCACATTCTGCCTCTCCAGTCGGCTGAGTGCCCGCACGC
1 AGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCC-GTCGGCTGAGCGCCCGCACAC
* * * * **
10822745 TCGTTTCGTGGGTTGGCTTAGGCGTAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCAGACCGA
65 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-TCAGACCGA
** *
10822808 GGGTTGTGGCAGTGGGACCGACAGCACGC
128 GGGTT-TGGCAGTAAGATCGACAGCACGC
* * * * * * * *
10822837 AGAGGGGGACCGGGAC-AACCAT-GGCTTGCGCATTATGCTTCTTCGGTCGGCTCAGCACCCGTA
1 --AGGGGGATCGGGCCGATCC-TCGGCTTGCGCATTATGCCTC-TCCGTCGGCTGAGCGCCCGCA
* * *
10822900 CACTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCG
62 CACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCG
*
10822965 AGGGTTTGGCAGTAAGATCGATAGCACGC
127 AGGGTTTGGCAGTAAGATCGACAGCACGC
**** * * * * * *
10822994 AGTGGGGGATCGATTTGATCCTCGACTTACGCATTCTACCTCTCCGATCGGCTGAGTGCCTGCAC
1 A--GGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCG-TCGGCTGAGCGCCCGCAC
* * *
10823059 GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
63 ACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
10823109 CATATGGAGT
Statistics
Matches: 337, Mismatches: 77, Indels: 29
0.76 0.17 0.07
Matches are distributed among these distances:
155 1 0.00
156 5 0.01
157 148 0.44
158 164 0.49
159 19 0.06
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (155 bp):
AGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGTCGGCTGAGCGCCCGCACACT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGG
TTTGGCAGTAAGATCGACAGCACGC
Found at i:10823003 original size:316 final size:316
Alignment explanation
Indices: 10822429--10823109 Score: 820
Period size: 316 Copynumber: 2.2 Consensus size: 316
10822419 GTGGATCGGG
* * *
10822429 TCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTATGCCCCAGTCGGACCGAGG
1 TCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGG
** * * * **
10822494 GTTGTGGCAACGGGACCGGTAACACGCAGAGGGGGATCGGGCCGATCCTCAGCTTGTTCATTATG
66 GTTGTGGCAACGGGACCGACAACACGCAGAGGGGGACCGGGACGAACCTCAGCTTGCGCATTATG
* * * * *
10822559 CCTCTCCGACTGGCTTAACGCCCGCACACTCGTTTCATGGGTTGACTTAGCCATGCTGAGTTCAT
131 CCTCTCCGACTGGCTCAACACCCGCACACTCATTTCATGGGTTGACTTAGCCATACGGAGTTCAT
* *
10822624 TCCCAGTCTAAGATCGGATCAGACTGAGGGTTACGGTAGTAAGATCAGCAGCACGCAGGGGGATC
196 TCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGTAAGATCAGCAGCACGCAGGGGGATC
* ** * *
10822689 GGGCCGATCCCCGGTTTGCACATTCTGCCTCTCC-AGTCGGCTGAGTGCCCGCACGC
261 GAGCCGATCCCCGACTTACACATTCTACCTCTCCGA-TCGGCTGAGTGCCCGCACGC
*
10822745 TCGTTTCGTGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGG
1 TCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGG
** * *
10822810 GTTGTGGCAGTGGGACCGACAGCACGCAGAGGGGGACCGGGAC-AACCAT-GGCTTGCGCATTAT
66 GTTGTGGCAACGGGACCGACAACACGCAGAGGGGGACCGGGACGAACC-TCAGCTTGCGCATTAT
* * * * * *
10822873 GCTTCTTCG-GTCGGCTCAGCACCCGTACACTCATTTCGTGGGTTGACTTATG-CATACGGAGTT
130 GCCTCTCCGACT-GGCTCAACACCCGCACACTCATTTCATGGGTTGACTTA-GCCATACGGAGTT
* * *
10822936 CATTCCCAGTCTAAGATCGGATCGGACCGAGGGTT-TGGCAGTAAGATC-GATAGCACGCAGTGG
193 CATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGTAAGATCAG-CAGCACGCA--GG
*** * * *
10822999 GGGATCGATTTGATCCTCGACTTACGCATTCTACCTCTCCGATCGGCTGAGTGCCTGCACGC
255 GGGATCGAGCCGATCCCCGACTTACACATTCTACCTCTCCGATCGGCTGAGTGCCCGCACGC
* ** *
10823061 TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGC
1 TCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
10823110 ATATGGAGTT
Statistics
Matches: 310, Mismatches: 47, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
313 1 0.00
314 20 0.06
315 95 0.31
316 190 0.61
317 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (316 bp):
TCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGG
GTTGTGGCAACGGGACCGACAACACGCAGAGGGGGACCGGGACGAACCTCAGCTTGCGCATTATG
CCTCTCCGACTGGCTCAACACCCGCACACTCATTTCATGGGTTGACTTAGCCATACGGAGTTCAT
TCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAGTAAGATCAGCAGCACGCAGGGGGATC
GAGCCGATCCCCGACTTACACATTCTACCTCTCCGATCGGCTGAGTGCCCGCACGC
Found at i:10823254 original size:184 final size:184
Alignment explanation
Indices: 10822924--10823293 Score: 415
Period size: 184 Copynumber: 2.0 Consensus size: 184
10822914 GTTGACTTAT
* * ** *
10822924 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTTGGCAGTAAGATCGATAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTCGGCAACAAGATCGACAG
* *** * * *
10822989 CACGCAGTGGGGGATCGATTTGATCCTCGACTTACGCATTCTACCTCTCCGATCGGCTGAGTGCC
66 CACGCAGTGGGGGACCGATCCAATCCTCGACTTACGCATTCTACCTCTCCGACCAGCTGAGCGCC
* * *
10823054 TGCACGCTCGTTTCGTGGGTTGACTTAGGCATACA-GAGTTCATCCCCA-GTCTAA
131 CGCACGCTCATTTCGTGGGATGACTTAGGCATA-AGGAGTTCAT-CCCATGTCTAA
* * *
10823108 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAACAAGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT-CGGCAACAAGATCGACA
** * * * * *
10823173 GCACGCAG-GGGGGACCG-TGCCAATCCTCGGGTTGCGTATTCTCCCTCTCCGGCCAGTTGAGCG
65 GCACGCAGTGGGGGACCGAT-CCAATCCTCGACTTACGCATTCTACCTCTCCGACCAGCTGAGCG
* * * *
10823236 CCCGTACGGTCATTTCGTGGGATGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
129 CCCGCACGCTCATTTCGTGGGATGACTTAGGCATAAGGAGTTCATCCCATGTCTAA
10823292 GC
1 GC
10823294 CCCAGCCGGA
Statistics
Matches: 153, Mismatches: 29, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
183 5 0.03
184 128 0.84
185 20 0.13
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTCGGCAACAAGATCGACAG
CACGCAGTGGGGGACCGATCCAATCCTCGACTTACGCATTCTACCTCTCCGACCAGCTGAGCGCC
CGCACGCTCATTTCGTGGGATGACTTAGGCATAAGGAGTTCATCCCATGTCTAA
Found at i:10823619 original size:26 final size:26
Alignment explanation
Indices: 10823583--10823652 Score: 122
Period size: 26 Copynumber: 2.7 Consensus size: 26
10823573 GTTGGCTTAG
10823583 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
10823609 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
* *
10823635 GCATACGGTGTTCATTCC
1 GCATACAGAGTTCATTCC
10823653 CAATCTATGA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:10823994 original size:26 final size:26
Alignment explanation
Indices: 10823965--10824015 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
10823955 TTGACTTAGG
*
10823965 CATACAGAGTTCATCCCCAGTCTAAA
1 CATACAGAGTTCATCCCCAATCTAAA
* *
10823991 CATACGGAGTTCATTCCCAATCTAA
1 CATACAGAGTTCATCCCCAATCTAA
10824016 GATCAGATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAATCTAAA
Found at i:10824343 original size:26 final size:26
Alignment explanation
Indices: 10824307--10824357 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
10824297 TGACTTAGGT
10824307 ATACAGAGTTCATT-CCATGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
*
10824333 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
10824358 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:10824534 original size:26 final size:26
Alignment explanation
Indices: 10824505--10824557 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10824495 TTCATCTTAG
*
10824505 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGCTCATCCCCAATCTAA
* *
10824531 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAATCTAA
10824557 G
1 G
10824558 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCCAATCTAA
Found at i:10825102 original size:305 final size:305
Alignment explanation
Indices: 10824593--10825208 Score: 805
Period size: 305 Copynumber: 2.0 Consensus size: 305
10824583 AGCAAGATCA
* * *
10824593 GCAGCAAATAGGGGGGATCGAGCCGATCCACAGCTTGTGTATTCTGCGTCCCCAGTCGACTGAGC
1 GCAGCAAATAGGGGGGATCGAGCCGATCCACAGCTTGCGTATTCTGCCTCCCCAGCCGACTGAGC
* * *
10824658 ACCCGCATGCCCGTTTCGTGGCTTGGCTTAGGCATAGGCAGTTCATTCCATGTCTAAGCCCCAGC
66 ACCCGCACGCCCGTTTCATGGCTTGGCTTAGGCATAGGCAGTTCATTCCATGTCCAAGCCCCAGC
* * * * *
10824723 CGGACTGAGGGTTGTGGCAGCGGGACCGGCATCACTCAAAGGGGGACCGAGCCGATCCCCGACTT
131 CGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAAAGGGGGACCGAGCCGATCCCCAACTT
* * * * *
10824788 GTACATTATGCCTCTTCAGTCGGCTCATCTCCTGTACGCTCATTTCGTGCG-TTGACTTATGCAT
196 GTACATTATGCCTCTTCAGTCGGCTCAGCGCCTGCACGCTCATTTCATG-GTTTGACTTAGGCAT
* * *
10824852 ACGAAGTTCATTCCCAGTCTAAGATCGGA-CTGGACCGAGGGTTGTG
260 ACGAAGTTCATTCCCAGTCTAAGATCGGATC-GAACCGAGAGTTGCG
* * * ** *
10824898 GCAGCACATAGGGGGGATCGGGTCGATCC-CAGGCTTGCGTATTCTGCCTCTTC-GACCGATTGA
1 GCAGCAAATAGGGGGGATCGAGCCGATCCACA-GCTTGCGTATTCTGCCTCCCCAG-CCGACTGA
* * * *
10824961 GCGCCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGG-AGTTTATTCCATGTCCAAGCCCC
64 GCACCCGCACGCCCGTTTCATGGCTTGGCTTAGGCAT-AGGCAGTTCATTCCATGTCCAAGCCCC
* * *
10825025 AGTCGGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAA-GGGGACCGAGCCGATCTCCA
128 AGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCA-AAGGGGGACCGAGCCGATCCCCA
* *
10825089 ACTTG-AGCATTATGCCTCTTCGGTCGGCTCAGCGCCTGCACGCTCGTTTCATGGTTTGACTTAG
192 ACTTGTA-CATTATGCCTCTTCAGTCGGCTCAGCGCCTGCACGCTCATTTCATGGTTTGACTTAG
*
10825153 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGAGTTGCG
256 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGAGTTGCG
10825203 GCAGCA
1 GCAGCA
10825209 GGATCGACAG
Statistics
Matches: 269, Mismatches: 35, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
304 5 0.02
305 258 0.96
306 6 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (305 bp):
GCAGCAAATAGGGGGGATCGAGCCGATCCACAGCTTGCGTATTCTGCCTCCCCAGCCGACTGAGC
ACCCGCACGCCCGTTTCATGGCTTGGCTTAGGCATAGGCAGTTCATTCCATGTCCAAGCCCCAGC
CGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAAAGGGGGACCGAGCCGATCCCCAACTT
GTACATTATGCCTCTTCAGTCGGCTCAGCGCCTGCACGCTCATTTCATGGTTTGACTTAGGCATA
CGAAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGAGTTGCG
Found at i:10825258 original size:159 final size:159
Alignment explanation
Indices: 10824960--10825339 Score: 426
Period size: 159 Copynumber: 2.4 Consensus size: 159
10824950 CGACCGATTG
* * * *
10824960 AGCGCCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTTATTCCATGTCCAAGCCCC
1 AGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
* * * * *
10825025 AGTCGGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAAGGGGACCGAGCCGATCTCCAA
66 AGTCGAACCGAGAGTTGCGGCAGCAGGATCGACAGCACACAGAAGGGGACCGAGCCGATCTCCAA
* **
10825090 CTTGAGCATTATGCCTCT-TCGGTCGGCTC
131 CTTGAGCATTATGCCTATCT-GACCGGCTC
* * **
10825119 AGCGCCTGCACGCTCGTTTCATGGTTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-AT
1 AGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCC
* **
10825182 CGGATCGAACCGAGAGTTGCGGCAGCAGGATCGACAGCACACAGGGGGGGACCGAGCCGATC-CT
65 CAG-TCGAACCGAGAGTTGCGGCAGCAGGATCGACAGCACACAGAAGGGGACCGAGCCGATCTC-
*** * * * *
10825246 TGGCTTGCGCATTCTGCCTATCTGACCGGTTG
128 CAACTTGAGCATTATGCCTATCTGACCGGCTC
* * * *
10825278 AACGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 AGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
10825340 ACACAGAGTT
Statistics
Matches: 183, Mismatches: 32, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
158 6 0.03
159 173 0.95
160 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
AGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
AGTCGAACCGAGAGTTGCGGCAGCAGGATCGACAGCACACAGAAGGGGACCGAGCCGATCTCCAA
CTTGAGCATTATGCCTATCTGACCGGCTC
Found at i:10825506 original size:183 final size:182
Alignment explanation
Indices: 10825160--10825706 Score: 614
Period size: 183 Copynumber: 3.0 Consensus size: 182
10825150 TAGGCATACG
* * * *
10825160 GAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGAGTTGCGGCAGCAGGATCGACAGCACACA
1 GAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCA
* * * * * *
10825225 GGGGGGGACCGAGCCGATCCTTGGCTTGCGCATTCTGCCT-ATCTGACCGGTTGAACGCCCGCAC
66 -GGGGGGA-CGAGCTGATCC-TGGCTTACGCATTCTGCCTCTTC-GATCGGCTGAGCGCCCGCAC
*
10825289 ACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACACA
127 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACACA
* * * * **
10825345 GAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGTTGCAGTAACAGGATCGGTAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCA
* * * **
10825410 GGGGGGATCGAGCTGATCCTCGCTTACGCATTCTGCCTCTTCAATCGACTGAGCGCCTACACGCT
66 GGGGGGA-CGAGCTGATCCTGGCTTACGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCT
* * * * * * **
10825475 CGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCA-ATCTAACCATATG
130 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCACACA
* * *
10825528 GAGTTCATTCCCAGTCTAAGATCAGA-CCATACCGAGGGTTACGGTAGCAGGATCGACAGCATGC
1 GAGTTCATTCCCAGTCTAAGATCAGATCGA-ACCGAGGGTTGCGGTAGCAGGATCGACAGCACGC
* * * * * * *
10825592 TGTGGGGACTGGGCTGATCCCTGGTTTACGCATTTTGCCTCTTGGGTCGGCTGAGCGCCCGCACG
65 AGGGGGGAC-GAGCTGAT-CCTGGCTTACGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACG
* *
10825657 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
128 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
10825707 CCCAGCCGGA
Statistics
Matches: 297, Mismatches: 59, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
182 1 0.00
183 143 0.48
184 98 0.33
185 55 0.19
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (182 bp):
GAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCA
GGGGGGACGAGCTGATCCTGGCTTACGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACACA
Found at i:10825532 original size:26 final size:26
Alignment explanation
Indices: 10825496--10825546 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
10825486 TTGACTTAGG
10825496 CATACGGAGTTCATCCCCAATCTAAC
1 CATACGGAGTTCATCCCCAATCTAAC
* * *
10825522 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAATCTAA
10825547 GATCAGACCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAATCTAAC
Found at i:10825884 original size:159 final size:157
Alignment explanation
Indices: 10825522--10825918 Score: 424
Period size: 159 Copynumber: 2.5 Consensus size: 157
10825512 CCAATCTAAC
* * * *
10825522 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCATACCGAGGGTTACGGTAGCAGGATCGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGCAGCAGGAT-GACAG
* * * ** * * *
10825587 CATGCTGTGGGGACTGGGCTGATCCCTGGTTTACGCATTTTGCCTCTTGGGTCGGCTGAGCGCCC
65 CACGCAGGGGGGACCAGGCTGATCCCTGGCTTACGCATTATGCCTCTTGGGTCGGCTCAGCGCCC
* * **
10825652 GCACGCCCGTTTCGTGGGTTGGCTTAGG
130 GAACGCCCATTTCGTGGGTTAACTTAGG
* ** ** * *
10825680 CATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAGCAGGACTGAC
1 CATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAAACCGAGGGTTGCGGCAGCAGGA-TGAC
*
10825743 AGCACGCAGAGGGGGACCAGGCTGAT-CCTCGGCTTGCGCATTATGCCTCTCT-GGTCGGCTCAG
63 AGCACGCAG-GGGGGACCAGGCTGATCCCT-GGCTTACGCATTATGCCTCT-TGGGTCGGCTCAG
* * *
10825806 TGCCCGAACGCTCATTTTGTGGGTTAACTTAGG
125 CGCCCGAACGCCCATTTCGTGGGTTAACTTAGG
* *
10825839 CATACGGAGTTCATTCCCAGTATAAGATCAGACCAAACCGAGGGTTGCGACAGCAGGATTGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGCAGCAGGA-TGACAG
*
10825904 CACGCAGGGAGGACC
65 CACGCAGGGGGGACC
10825919 TGGTCGCTCC
Statistics
Matches: 195, Mismatches: 36, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.02
158 64 0.33
159 124 0.64
160 4 0.02
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.23
Consensus pattern (157 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGCAGCAGGATGACAGC
ACGCAGGGGGGACCAGGCTGATCCCTGGCTTACGCATTATGCCTCTTGGGTCGGCTCAGCGCCCG
AACGCCCATTTCGTGGGTTAACTTAGG
Found at i:10826235 original size:26 final size:26
Alignment explanation
Indices: 10826205--10826259 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 26
10826195 GTTGACTTAG
10826205 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
10826231 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10826257 GCA
1 GCA
10826260 GTGCGCAGAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.86
27 4 0.14
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10826483 original size:150 final size:151
Alignment explanation
Indices: 10826277--10826679 Score: 432
Period size: 150 Copynumber: 2.6 Consensus size: 151
10826267 GAGGGAGACT
* * * * * * *
10826277 GAGCCGATCCCCGGCTTGTGCATTATGCCTTTTCGATCGGTTCAACACCCGAACGCTCGTTTCGT
1 GAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCCGAACGCTCGTTTCGT
* * * * *
10826342 GGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGATAGGACCGAGGGTTGCGGCA
66 GGGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACAGAACCAAGGGTTACGGCA
10826407 GCAGGATCGACAGCACGCA-G
131 GCAGGATCGACAGCACGCAGG
* *
10826427 GAGCCGATCCCCAACTTGCGCATTATGCCTCTCCGATCGACTCAGCGCCCGAACGCTCGTTTCGT
1 GAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCCGAACGCTCGTTTCGT
* * * *
10826492 GGGTTGGTTTAGGCGTAC-AGAGTTCATTCCCAATCTAAGATCAGACCGAACCAAGGGTTACGGT
66 GGGTTGGCTTAGGCATACGA-AGTTCATTCCCAATCTAAGATCAGACAGAACCAAGGGTTACGGC
* * * *
10826556 AGTAGGATTGACAGCATGTAGGGGG
130 AGCAGGATCGACAGCACGCA---GG
* * * * * * * * * *
10826581 GATCAGGCCGGTCCCCAGTTTGCTCATTCTACCTCTCTGACCGGCTGAGCGCCCGCACGCTCATT
1 G---A-GCCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCCGAACGCTCGTT
10826646 TCGTGGGTTGGCTTAGGCATACGAAGTTCATTCC
62 TCGTGGGTTGGCTTAGGCATACGAAGTTCATTCC
10826680 ATGTCTAAGC
Statistics
Matches: 207, Mismatches: 36, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
149 1 0.00
150 125 0.60
154 2 0.01
157 1 0.00
158 77 0.37
159 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (151 bp):
GAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCCGAACGCTCGTTTCGT
GGGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACAGAACCAAGGGTTACGGCA
GCAGGATCGACAGCACGCAGG
Found at i:10826699 original size:26 final size:26
Alignment explanation
Indices: 10826662--10826714 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10826652 GTTGGCTTAG
10826662 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
10826688 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10826714 G
1 G
10826715 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10828571 original size:26 final size:26
Alignment explanation
Indices: 10828519--10828571 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10828509 GTTGACTTAG
*
10828519 GCATACAGAGTTCATCCCCAGTGTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
10828545 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
10828571 G
1 G
10828572 ACAGAGGGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:10829610 original size:26 final size:26
Alignment explanation
Indices: 10829574--10829626 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10829564 GTTGACTTAG
*
10829574 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
10829600 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
10829626 G
1 G
10829627 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:10830336 original size:191 final size:195
Alignment explanation
Indices: 10830040--10830486 Score: 573
Period size: 191 Copynumber: 2.3 Consensus size: 195
10830030 GTCGGTTGAA
* * *
10830040 CGCCCGCACGTTCTATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATCTCTAAGCATAAG
1 CGCCCGCACGCTCGATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-AT-AG
10830105 GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAAGACCAGCAGCAGGAT
64 GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAAGACCAGCAGCAGGAT
* * * * **
10830170 TGGCATCACGCAG-GGGGGACCATGCT-GATCCCCGGCTTGTGGATTCTGCCTCTCCGGATGGCT
129 TGGCAGCACGCAGAGGGGGACC-GGCTCGATCCCCGACTTGTGCATTCTAACTCTCCGGATGGCT
10830233 GAG
193 GAG
* *
10830236 CGCCCGTACGCTC-ATTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG-T-GGA
1 CGCCCGCACGCTCGATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATAGGA
* * ** * *
10830298 GTTCATTCCCAGTCTGATATCAGACCGGA-CTGAGGGTTGCGGTAGTAAGACCAGCAGTAGGATT
66 GTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGACAGCAAGACCAGCAGCAGGATT
* * * * * *
10830362 GGTAGCACGCAGAGGGGGATCGGGTCGATCCCCGACTTGTGCATTCTAACTCTTCGGCTGGTTGA
130 GGCAGCACGCAGAGGGGGACCGGCTCGATCCCCGACTTGTGCATTCTAACTCTCCGGATGGCTGA
10830427 G
195 G
* * * *
10830428 CGCCTGCACGCTCGTTTCATGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CGCCCGCACGCTCGATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
10830487 CCCCAGCTAG
Statistics
Matches: 219, Mismatches: 28, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
190 1 0.00
191 71 0.32
192 51 0.23
193 42 0.19
195 43 0.20
196 11 0.05
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.26
Consensus pattern (195 bp):
CGCCCGCACGCTCGATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATAGGA
GTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAAGACCAGCAGCAGGATTG
GCAGCACGCAGAGGGGGACCGGCTCGATCCCCGACTTGTGCATTCTAACTCTCCGGATGGCTGAG
Found at i:10830680 original size:26 final size:26
Alignment explanation
Indices: 10830644--10830696 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10830634 GTTGACTTAG
10830644 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
10830670 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
10830696 G
1 G
10830697 ATTGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:10831204 original size:26 final size:26
Alignment explanation
Indices: 10831168--10831220 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10831158 GTTAACTTAC
*
10831168 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
10831194 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
10831220 G
1 G
10831221 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:10832145 original size:317 final size:317
Alignment explanation
Indices: 10831699--10832380 Score: 730
Period size: 317 Copynumber: 2.2 Consensus size: 317
10831689 CCCACATATT
*
10831699 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGTCAGACCGAAGG
1 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAAGG
** * * *
10831764 TTGTGGCAGCGGGACTGGCAGCACGTAGAGGGGGACCGGGCTGATCCCCGGCTTGTTCATTATGC
66 TTGTGGCAGCAAGACCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGTTCATTATGC
** * * *
10831829 CTCTTCGGTAGGCTCAAC-GCC-TGAACACTCGTTTCGTGGATTAACTTAGGCATAC-GAAGTTC
131 CTCTTCGACAGACTCAACACCCATG--CACTCATTTCGTGGATTAACTTAGGCATACAG-AGTTC
* * * * * *
10831891 ATTACCAATGTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGTAGAGGGG
193 ATTACCAATCTAAGATCGAACCGAACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGG
** ** * * **
10831956 ATC-GGGCTGATCCACGGTTTGCACATTTTGCCTCTCCGGTCGGTTAAGCACCCGCACGCC
258 A-CAAAGCTGATCCACGACTTACACATTCTGCCTCTCCGACCGGTTAAGCACCCGCACGCC
* * ** * *
10832016 CGTTTCATGGGCTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGTGCTAGTC-GAACCGAGG
1 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAG-ACCGAAG
* * * * *
10832080 GTTGTGGTAGCAAGACCGACAGCATGCAGAGGGGGATCGGG-TCGATCTCGGGCTTGTGT-ATTA
65 GTTGTGGCAGCAAGACCGACAGCACGCAGAGGGGGACCGGGCT-GATCCCCGGCTTGT-TCATTA
* * * * *
10832143 TGCCTTTTCGACCGACTCAACACCCATGCGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTC
128 TGCCTCTTCGACAGACTCAACACCCATGCACTCATTTCGTGGATTAACTTAGGCATACAGAGTTC
* * * * * * *
10832208 ATTCCCAGTCTAAGATCGAACTGAACTGAGGGTTGTGACAGCAGGATCGACAGCATGCAGGGGGG
193 ATTACCAATCTAAGATCGAACCGAACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGG
* * * * * *
10832273 ACAAAGCTGATCCTCGACTTACGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGCATGCT
258 ACAAAGCTGATCCACGACTTACACATTCTGCCTCTCCGACCGGTTAAGCACCCGCACGCC
* * * *
10832333 CATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGC
1 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
10832381 ATACGGAGTT
Statistics
Matches: 297, Mismatches: 61, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
316 3 0.01
317 288 0.97
318 4 0.01
319 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.25
Consensus pattern (317 bp):
CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAAGG
TTGTGGCAGCAAGACCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGTTCATTATGC
CTCTTCGACAGACTCAACACCCATGCACTCATTTCGTGGATTAACTTAGGCATACAGAGTTCATT
ACCAATCTAAGATCGAACCGAACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGACA
AAGCTGATCCACGACTTACACATTCTGCCTCTCCGACCGGTTAAGCACCCGCACGCC
Found at i:10832763 original size:26 final size:26
Alignment explanation
Indices: 10832732--10832784 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10832722 GTTAACTTAG
*
10832732 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
10832758 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
10832784 G
1 G
10832785 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10834765 original size:26 final size:26
Alignment explanation
Indices: 10834735--10834787 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10834725 GTTGACTTAG
*
10834735 GCATATGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
10834761 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
10834787 G
1 G
10834788 ATTGGACAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:10835123 original size:159 final size:159
Alignment explanation
Indices: 10834834--10835265 Score: 375
Period size: 159 Copynumber: 2.7 Consensus size: 159
10834824 TAACACACAG
* * * * * *
10834834 GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCC
1 GGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGACTCAGCACCCGCACACC
* * * * * **
10834899 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCTGACCGAGGG
66 CATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCACCAAACTGACCGAGGG
10834964 TTGTGGCAGCGGGATCGAAAGCATGCAAA
131 TTGTGGCAGCGGGATCGAAAGCATGCAAA
* * * * * * *
10834993 GGGGGATCGGGCCGATCCCCATCTTGTGCATTATGCCTCTTCGGTCGGCTCAGCACCCGCACACT
1 GGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGACTCAGCACCCGCACACC
* * *
10835058 CATTTCGTGGGTTGACTTATGCATACGAAGTTCATTCC-TAGTCTAAG-ATCAAACTAGACTGAG
66 CATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCAT-GTCTAAGCACCAAACT-GACCGAG
** * * ** *
10835121 GGTTACGACAGCAGGATC-AACAGCACACAGA
129 GGTTGTGGCAGCGGGATCGAA-AGCATGCAAA
* * * * * * * * * * * * *
10835152 GGGGAACCAGGCCGATTCTCAGCTTGCGCATTCTACCTCTCTGACCGGCTAAGCGCCCGCACGCT
1 GGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGACTCAGCACCCGCACACC
* * ** * *
10835217 CGTTTCGTAGGTTGGTTTAGGCATACGGAGTTCATTGCATGTCTAAGCA
66 CATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
10835266 TATGGAGTTC
Statistics
Matches: 215, Mismatches: 53, Indels: 9
0.78 0.19 0.03
Matches are distributed among these distances:
158 7 0.03
159 206 0.96
160 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (159 bp):
GGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGACTCAGCACCCGCACACC
CATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCACCAAACTGACCGAGGG
TTGTGGCAGCGGGATCGAAAGCATGCAAA
Found at i:10835273 original size:26 final size:26
Alignment explanation
Indices: 10835237--10835287 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
10835227 GTTGGTTTAG
10835237 GCATACGGAGTTCATT-GCATGTCTAA
1 GCATACGGAGTTCATTCGCA-GTCTAA
*
10835263 GCATATGGAGTTCATTCGCAGTCTA
1 GCATACGGAGTTCATTCGCAGTCTA
10835288 TGATTTTAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCGCAGTCTAA
Found at i:10835988 original size:26 final size:27
Alignment explanation
Indices: 10835953--10836007 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
10835943 CGTGGGTTGA
10835953 CTTAGGCATACGGAGTTCATCCCTAGT
1 CTTAGGCATACGGAGTTCATCCCTAGT
* *
10835980 CTTA-GCATATGGAGTTCATTCCTAGT
1 CTTAGGCATACGGAGTTCATCCCTAGT
10836006 CT
1 CT
10836008 AAGATCAGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.35
Consensus pattern (27 bp):
CTTAGGCATACGGAGTTCATCCCTAGT
Found at i:10836683 original size:26 final size:26
Alignment explanation
Indices: 10836633--10836685 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10836623 GTTGGCTTAG
* *
10836633 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
10836659 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
10836685 G
1 G
10836686 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:10837385 original size:26 final size:26
Alignment explanation
Indices: 10837355--10837405 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
10837345 TTGACTTAGG
10837355 CATACAGAGTTCATCCCCAGTCTAAA
1 CATACAGAGTTCATCCCCAGTCTAAA
* *
10837381 CATACAGAGTTCATTCCTAGTCTAA
1 CATACAGAGTTCATCCCCAGTCTAA
10837406 GATCGGATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAA
Found at i:10838065 original size:316 final size:315
Alignment explanation
Indices: 10837381--10838197 Score: 910
Period size: 316 Copynumber: 2.6 Consensus size: 315
10837371 CCAGTCTAAA
* * * * * * * *
10837381 CATACAGAGTTCATTCCTAGTCTAAGATCGGATCGGACTGAGGGTTGCAGCAGCATGATTGGCAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGG-TACGGTAGCAGGATCGGCAG
* * * *
10837446 CACGCAAGGGGGACCAGGC-AATCCCCGGCTTGCGCATTCTGTCTCTCCGACCGACTTAGCACCC
65 CACGC-AGGGGGACCGGGCGAATCCCTGGCTTGCACATTCTGTCTCTCCGACCGACTGAGCACCC
* * *
10837510 GCGCGGTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTAAGCCCCAACCGGA
129 GCACGGTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGA
* * * ** * ** *
10837575 TCGAGGGTTGTGGCAGTAGGGCCGGCAGCACGTAGAGGGGGATTGGGCCGATCCTCGACTTGTGC
194 CCGAGGGTTGTGGCAGTAGGGCAGGCAACACACAGAGAGGGACCGGGCCGATCCTCGACTTGCGC
*
10837640 ATTAAGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
259 ATTAAGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGG
* * **
10837697 CATACGGAGTTCATTCCCAGTCTAAGGTC-AGACCAAACTGAGGGATACGGTAGCAGGATCGGCA
1 CATACGGAGTTCATTCCCAGTCTAAGATCGA-ATCGGACTGAGGG-TACGGTAGCAGGATCGGCA
* * * *
10837761 GCATGCAGGGGAGACCGGGCGAATCCCTGACTTACACATTCTGTCTCCCCGACCGACTGAGCACC
64 GCACGCAGGGG-GACCGGGCGAATCCCTGGCTTGCACATTCTGTCTCTCCGACCGACTGAGCACC
* * ***
10837826 CGCACGGTCGTTTCGTGGGTTGGTTTA-GCATAGGGAGTTCAGTCCATGTCTAAGCCCCTGTCAG
128 CGCACGGTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAG
* * * * *
10837890 ACCTAGGGTTGTGGCAG-CGGGATAGGCAACACACAGAGAGGGACCGTGCCGATCC-CTGGCTTG
193 ACCGAGGGTTGTGGCAGTAGGG-CAGGCAACACACAGAGAGGGACCGGGCCGATCCTC-GACTTG
* *
10837953 CGCATTATGCCTCTCCGG-CTGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
256 CGCATTAAGCCTCTCCGGTC-GGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGG
* ** **
10838013 CATACGGAGTTCATTCCCAGTCTAAGATCGAATTGGACCAAGGGTCACGGTAGCAGGATCGATAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGT-ACGGTAGCAGGATCGGCAG
* * * * * * * * *
10838078 CACGTAGGGGGGATCGGGTCG-GTCCTTGGCTTGCACATTCTGCCTTTTCGGCCGGCTGAGCACC
65 CACGCA-GGGGGACCGGG-CGAATCCCTGGCTTGCACATTCTGTCTCTCCGACCGACTGAGCACC
* * * * *
10838142 CGTATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
128 CGCACGGTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
10838198 ATACGAAGTT
Statistics
Matches: 415, Mismatches: 75, Indels: 21
0.81 0.15 0.04
Matches are distributed among these distances:
315 11 0.03
316 308 0.74
317 96 0.23
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (315 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTACGGTAGCAGGATCGGCAGC
ACGCAGGGGGACCGGGCGAATCCCTGGCTTGCACATTCTGTCTCTCCGACCGACTGAGCACCCGC
ACGGTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACC
GAGGGTTGTGGCAGTAGGGCAGGCAACACACAGAGAGGGACCGGGCCGATCCTCGACTTGCGCAT
TAAGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGG
Found at i:10838220 original size:26 final size:26
Alignment explanation
Indices: 10838170--10838222 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10838160 GTTGGCTTAG
* *
10838170 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
10838196 GCATACGAAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
10838222 G
1 G
10838223 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:10839176 original size:26 final size:26
Alignment explanation
Indices: 10839146--10839198 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10839136 GTTGGCTTAG
10839146 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
10839172 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10839198 G
1 G
10839199 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10839384 original size:26 final size:26
Alignment explanation
Indices: 10839355--10839407 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
10839345 GTTGACTTAG
10839355 GCATACGGAGTGT-A-TCCTCAGTCTAA
1 GCATACGGAGT-TCATTCC-CAGTCTAA
10839381 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10839407 G
1 G
10839408 ATCTAACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10839727 original size:26 final size:26
Alignment explanation
Indices: 10839697--10839748 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
10839687 GTTGACTTAG
10839697 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
10839723 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
10839749 AATCAGATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10839940 original size:343 final size:342
Alignment explanation
Indices: 10839336--10839986 Score: 869
Period size: 343 Copynumber: 1.9 Consensus size: 342
10839326 CCGCATTCTT
* *
10839336 GTTTCTTGGGTTGACTTAGGCATACGGAGTGTATCCTCAGTCTAAGCATACGGAGTTCATTCCCA
1 GTTTCATGGGTTGACTTAGGCATACGGAGTGTATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * ** * ** *
10839401 GTCTAAGATCTAACCGGACCGAGGGTTGCGTCAGCAGGATCGGCGGCACGCAGGGGGACCGGGTC
66 GTCTAAAATCTAACCGGACCGAGGGTTGCGGCAGCAAGATCGACAACACACAGGGGGACAAGCTC
* * * * * *
10839466 GATCCCCAACTTGCGTATTCTACCTCTTCGGCCGGCTGAGCACCCACACGCCCGTTTCATGGGTT
131 GATCCCCAACTTGCGCATTCTACCTCTCCGACCGACTAAACACCCACACGCCCGTTTCATGGGTT
**
10839531 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTGGG
196 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGAAGTGGCAGTGGG
* * * *
10839596 ACCTG-TAGCACACAGAGGGGGATCGGGCCGATCCCCGTCTTGCGCATTCTATCTCTCTAGTCGA
261 ACC-GACAGCACACAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTATCTCTCTAGTCGA
10839660 CTGAGCGCCCATGCGCTC
325 CTGAGCGCCCATGCGCTC
*
10839678 GTTTCATGGGTTGACTTAGGCATACGGAGT-TCATCCCCAGTCTAAGCATATGGAGTTCATTCCC
1 GTTTCATGGGTTGACTTAGGCATACGGAGTGT-ATCCCCAGTCTAAGCATACGGAGTTCATTCCC
* ** *
10839742 AGTCTAAAATC-AGATCGGATTGAGGGTTGCGGCAGCAAGATCGATAACACACAGGAGGGATCAA
65 AGTCTAAAATCTA-ACCGGACCGAGGGTTGCGGCAGCAAGATCGACAACACACAGG-GGGA-CAA
* *** * * *
10839806 GCT-GATCTCTGGCTTGCGCATTCTACCTCTCCGACCGACTAAACGCCCGCACGCTCGTTTCATG
127 GCTCGATCCCCAACTTGCGCATTCTACCTCTCCGACCGACTAAACACCCACACGCCCGTTTCATG
*
10839870 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTACGCCCCAGTCGGACCGAGGGAAGTGGCAG
192 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGAAGTGGCAG
* * *
10839935 TGGGACCGACAGCACGCAGAGGGGGACCGAGCCGATCCTCGGCTTGTGCATT
257 TGGGACCGACAGCACACAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATT
10839987 ATGCCTTTTC
Statistics
Matches: 264, Mismatches: 40, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
341 2 0.01
342 102 0.39
343 157 0.59
344 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (342 bp):
GTTTCATGGGTTGACTTAGGCATACGGAGTGTATCCCCAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAAATCTAACCGGACCGAGGGTTGCGGCAGCAAGATCGACAACACACAGGGGGACAAGCTC
GATCCCCAACTTGCGCATTCTACCTCTCCGACCGACTAAACACCCACACGCCCGTTTCATGGGTT
GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGAAGTGGCAGTGGG
ACCGACAGCACACAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTATCTCTCTAGTCGAC
TGAGCGCCCATGCGCTC
Found at i:10840038 original size:159 final size:159
Alignment explanation
Indices: 10839849--10840384 Score: 474
Period size: 159 Copynumber: 3.4 Consensus size: 159
10839839 ACCGACTAAA
* * * *
10839849 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTACGCCCCAG
1 CGCCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
* * *
10839914 TCGGACCGAGGGAAGTGGCAGTGGGACCGACAGCACGCAGAGGGGGACCGAGCCGAT-CCTCGGC
66 CCGGACCGAGGGAAGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGAGCCGATCCCT-GAC
* *
10839978 TTGTGCATTATGCCTTTTCGATCGGCTCAG
130 TTGCGCATTATGCCTCTTCGATCGGCTCAG
*
10840008 CGCCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGGCCCAG
1 CGCCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
** * * * *
10840073 CCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGATCGGGTCGATCCCTGACT
66 CCGGACCGAGGGAAGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGAGCCGATCCCTGACT
*
10840138 TGCGCATTATGCCTCTTCGATCAGCTTC-G
131 TGCGCATTATGCCTCTTCGATCGGC-TCAG
* * ** * * * * * ** * * ****
10840167 TGCCCGAATGCTCGTTTCGTGCGTTGACTTAGGCATACAGAGTTCATACCCA-GTTTAAG-ATTG
1 CGCCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGCCCCA
* * ** * * * ** * *
10840230 GACCGGACTGAGGG-TGATGGCAGCAAGATCGACAGCATGCAG-GGGGGACCGGGTTGGTCCCCG
65 G-CCGGACCGAGGGAAG-TGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGAGCCGATCCCTG
* * * * * *
10840293 GCTT-CTACATTCTGCCTCTTCGGTCGGTTGAG
128 ACTTGC-GCATTATGCCTCTTCGATCGGCTCAG
* * * *
10840325 CGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CGCCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
10840385 ATACGAAGTT
Statistics
Matches: 308, Mismatches: 60, Indels: 18
0.80 0.16 0.05
Matches are distributed among these distances:
157 5 0.02
158 87 0.28
159 208 0.68
160 8 0.03
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
CGCCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
CCGGACCGAGGGAAGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGAGCCGATCCCTGACT
TGCGCATTATGCCTCTTCGATCGGCTCAG
Found at i:10840394 original size:26 final size:26
Alignment explanation
Indices: 10840357--10840408 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10840347 GTTGGCTTAG
*
10840357 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
10840383 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10840409 TATTGGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10841246 original size:159 final size:159
Alignment explanation
Indices: 10840963--10841584 Score: 603
Period size: 159 Copynumber: 3.9 Consensus size: 159
10840953 GAACTGGATC
* * * * * * ** * *
10840963 GAGGGTTGCGGCAATAGGATCGGCAGCACGCA-AGAGGGACCGGACCGGTCCCC-AGCTTGTGCA
1 GAGGGTTGTGGTAGTAGGACCGGCAGCACGTAGAGGGGGACCGGGTCGATCCCCGA-CTTGCGCA
* * * * * * * * * * *
10841026 TTTTGCCTCTTCGGTCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTAGCGTAGGGATAGGGAG
65 TTATGCCTATTCGGCCAGCTCAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
*
10841091 TTCATTCCATGTCTAAGCCCCAACCAAACC
130 TTCATTCCATGTCTAAGCCCCAACCAAACT
* *
10841121 GAGGGTTGTGGTAGTGGGACCGGCAGCACGTAGAGGGGGACCGGGTCGATCCCCGACTTACGCAT
1 GAGGGTTGTGGTAGTAGGACCGGCAGCACGTAGAGGGGGACCGGGTCGATCCCCGACTTGCGCAT
** * * ** *
10841186 TATGCCCT-TTCAACCAGCTCAGCGCCCGTATGCCCGTTTTATGGGTTGGCTTAGGCATAGGGAG
66 TATG-CCTATTCGGCCAGCTCAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
*
10841250 TTCATTCCATGTCTAAGCCCCAGCCAGAA-T
130 TTCATTCCATGTCTAAGCCCCAACCA-AACT
* * * * * *
10841280 GAGGGTTGTGGTAGCAGGACCGGCAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCAT
1 GAGGGTTGTGGTAGTAGGACCGGCAGCACGTAGAGGGGGACCGGGTCGATCCCCGACTTGCGCAT
* * ** * * *
10841345 TATGCATATTCGGCCGGCTCAGCTTCCGCACT-CTCGTTTCGTGGGTTGACTTATGCATACAGAG
66 TATGCCTATTCGGCCAGCTCAGCGCCCGCA-TGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
**
10841409 TTCATTCCCA-GTCTAAG-ATCAGACCAAACT
130 TTCATT-CCATGTCTAAGCCCCA-ACCAAACT
* ** *
10841439 GAGGGTTGTGGTAGTAGGATCAACAGCACGTA-AGGGGGACCGGGTCAATCCCCGACTTGCGCAT
1 GAGGGTTGTGGTAGTAGGACCGGCAGCACGTAGAGGGGGACCGGGTCGATCCCCGACTTGCGCAT
* * * * * * * *
10841503 TCTGCCTCTCCGGCCAGTTGAGTGCCTGCAGGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
66 TATGCCTATTCGGCCAGCTCAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
10841568 TCATTCCATGTCTAAGC
131 TCATTCCATGTCTAAGC
10841585 ATACGGAGTT
Statistics
Matches: 373, Mismatches: 79, Indels: 23
0.79 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 120 0.32
159 240 0.64
160 10 0.03
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (159 bp):
GAGGGTTGTGGTAGTAGGACCGGCAGCACGTAGAGGGGGACCGGGTCGATCCCCGACTTGCGCAT
TATGCCTATTCGGCCAGCTCAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCCCCAACCAAACT
Found at i:10841550 original size:317 final size:317
Alignment explanation
Indices: 10840978--10841584 Score: 731
Period size: 318 Copynumber: 1.9 Consensus size: 317
10840968 TTGCGGCAAT
* * * * * * *
10840978 AGGATCGGCAGCACGCAAGAGGGACCGGACCGGTCCCCAGCTTGTGCATTTTGCCTCTTCGGTCG
1 AGGACCGGCAGCACGCAAGAGGGACCGGACCGATCCCCAGCTTGCGCATTATGCATATTCGGCCG
* * **
10841043 GCTGAGCGCCTGCACGCTCGTTTCGTGGGTTAGCGTAGGGATAGGGAGTTCATTCCATGTCTAAG
66 GCTCAGCGCCTGCACGCTCGTTTCGTGGGTTAGCGTAGGCATACAGAGTTCATTCCATGTCTAAG
* * ** *
10841108 CCCCAACCAAACCGAGGGTTGTGGTAGTGGGACCGGCAGCACGTAGAGGGGGACCGGGTCGATCC
131 CACCAACCAAACCGAGGGTTGTGGTAGTAGGACCAACAGCACGTAGAGGGGGACCGGGTCAATCC
* * * *
10841173 CCGACTTACGCATTATGCCCTTTCAACCAGCTCAGCGCCCGTATGCCCGTTTTATGGGTTGGCTT
196 CCGACTTACGCATTATGCCCTTCCAACCAGCTCAGCGCCCGCAGGCCCGTTTCATGGGTTGGCTT
*
10841238 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAATGAGGGTTGTGGTAGC
261 AGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAATGAGGGTTGTGGTAGC
* * * * *
10841295 AGGACCGGCAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCATATTCGGCC
1 AGGACCGGCAGCACGCA-AGAGGGACCGGACCGATCCCCAGCTTGCGCATTATGCATATTCGGCC
* * * *
10841360 GGCTCAGCTTCC-GCACTCTCGTTTCGTGGGTT-GACTTATGCATACAGAGTTCATTCCCA-GTC
65 GGCTCAGC-GCCTGCACGCTCGTTTCGTGGGTTAG-CGTAGGCATACAGAGTTCATT-CCATGTC
* * *
10841422 TAAG-ATCAGACCAAACTGAGGGTTGTGGTAGTAGGATCAACAGCACGTA-AGGGGGACCGGGTC
127 TAAGCACCA-ACCAAACCGAGGGTTGTGGTAGTAGGACCAACAGCACGTAGAGGGGGACCGGGTC
* * ** * * * * * *
10841485 AATCCCCGACTTGCGCATTCTG-CCTCTCCGGCCAGTTGAGTGCCTGCAGGCTCGTTTCGTGGGT
191 AATCCCCGACTTACGCATTATGCCCT-TCCAACCAGCTCAGCGCCCGCAGGCCCGTTTCATGGGT
10841549 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
255 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
10841585 ATACGGAGTT
Statistics
Matches: 241, Mismatches: 43, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
316 3 0.01
317 113 0.47
318 120 0.50
319 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (317 bp):
AGGACCGGCAGCACGCAAGAGGGACCGGACCGATCCCCAGCTTGCGCATTATGCATATTCGGCCG
GCTCAGCGCCTGCACGCTCGTTTCGTGGGTTAGCGTAGGCATACAGAGTTCATTCCATGTCTAAG
CACCAACCAAACCGAGGGTTGTGGTAGTAGGACCAACAGCACGTAGAGGGGGACCGGGTCAATCC
CCGACTTACGCATTATGCCCTTCCAACCAGCTCAGCGCCCGCAGGCCCGTTTCATGGGTTGGCTT
AGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAATGAGGGTTGTGGTAGC
Found at i:10841593 original size:26 final size:26
Alignment explanation
Indices: 10841557--10841609 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10841547 GTTGGCTTAG
10841557 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
10841583 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10841609 G
1 G
10841610 ATTTTGAGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.