Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 62 of 402
Found at i:10842327 original size:26 final size:26
Alignment explanation
Indices: 10842288--10842340 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10842278 GTTGACTTAG
*
10842288 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
10842314 GCATACAGATTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
10842340 G
1 G
10842341 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:10842845 original size:159 final size:158
Alignment explanation
Indices: 10842406--10842846 Score: 438
Period size: 159 Copynumber: 2.8 Consensus size: 158
10842396 GGCCGATCAT
* * ** * * *
10842406 CGACTTGCGCATTCTGCCTTTCTGGTCAGCTGAATGCCCGTACACCCATTTCGTGCGTTGGCTTA
1 CGACTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTA
* * * * * **
10842471 GGCATAGGGAGTTCAATCTATGCCTAAGCC-CTAGCTGGACTGAGGGTTGTGGCAGTAGGACCGG
66 GGCATACGGAGTTCATTCCATGTCTAAGCCTC-AGCTGGACCGAGGGTTGTGGCAGTA-GACCAA
* *
10842535 TAGCACGTAGAGGGGGATCGGGTCAATCCC
129 CAGCACGTAGAGGGGGATCGAGTCAATCCC
** * * * * * * * * * * *
10842565 CGGTTTGCGCATTATGTCTCCCCGATCGACTCAGCGCCCGGATGCTCATTTCATGGGTTGACTTA
1 CGACTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTA
* * * * * *** *
10842630 GGCATATGGAGTTCATTCCCA-GTCTAAG-ATCGGATCAGACCGAGGGTTGCAACAGTAGATTCA
66 GGCATACGGAGTTCATT-CCATGTCTAAGCCTCAGCT-GGACCGAGGGTTGTGGCAGTAGA-CCA
* * *
10842693 ACAGCACGTTGGGGGGGATCGAGTCGATCCC
128 ACAGCACGTAGAGGGGGATCGAGTCAATCCC
10842724 CGACTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTA
1 CGACTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTA
*
10842789 GGCATACGCAGTTCATTCCATGTCTAAGCCTCAGCTGGACCGAGGGTTGTGGCAGTAG
66 GGCATACGGAGTTCATTCCATGTCTAAGCCTCAGCTGGACCGAGGGTTGTGGCAGTAG
10842847 GACCGGCAGC
Statistics
Matches: 214, Mismatches: 62, Indels: 12
0.74 0.22 0.04
Matches are distributed among these distances:
158 7 0.03
159 201 0.94
160 6 0.03
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.26
Consensus pattern (158 bp):
CGACTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTA
GGCATACGGAGTTCATTCCATGTCTAAGCCTCAGCTGGACCGAGGGTTGTGGCAGTAGACCAACA
GCACGTAGAGGGGGATCGAGTCAATCCC
Found at i:10843025 original size:26 final size:26
Alignment explanation
Indices: 10842974--10843026 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10842964 GTTGACTTAG
* **
10842974 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAACCTAA
*
10843000 GCATACAGAGTTCATTCCCAACCTAA
1 GCATACAGAGTTCATCCCCAACCTAA
10843026 G
1 G
10843027 ATCGCATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAACCTAA
Found at i:10843288 original size:159 final size:159
Alignment explanation
Indices: 10843051--10843503 Score: 558
Period size: 159 Copynumber: 2.9 Consensus size: 159
10843041 AGGGTTACGA
* *
10843051 CAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCTCTGGCTTGCGCATTCTGCCTCTCCG
1 CAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
* * * *
10843116 CTCGGCTGAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
66 ATCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* *
10843181 TAAGCCTCAG-TCAGACCAAGGGTTGTGG
131 TAAGCATCAGATCAGAACAAGGGTTGTGG
* * *
10843209 CAGC-GG-TACTGGCAGCACGCAAAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCT
1 CAGCAGGAT-C-GGCAGCACGC-AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCT
* * * * * * * *
10843272 TCGGTCGATTCAGCGCCCGTACGCTTGTTTCATGGGTTGGCTTATGCATACAGAGTTCATTCCCA
63 CCGATCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCA
* * **
10843337 -GTCTAAG-ATCTGATCGGAATGAGGGTTGTGG
127 TGTCTAAGCATCAGATCAGAACAAGGGTTGTGG
** * * *
10843368 TGGCAGGATCGACAGCACGCAGGGGGGACCGGACTGATCCCCGG-TTGCGCATTCTGCCTCTCCG
1 CAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
* *
10843432 ATCGGTTGAGCGCCCGTACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCC
66 ATCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
10843497 TAAGCAT
131 TAAGCAT
10843504 ACGGAGTTCA
Statistics
Matches: 246, Mismatches: 40, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
156 4 0.02
157 76 0.31
158 40 0.16
159 119 0.48
160 6 0.02
161 1 0.00
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.24
Consensus pattern (159 bp):
CAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
ATCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGCATCAGATCAGAACAAGGGTTGTGG
Found at i:10844616 original size:26 final size:26
Alignment explanation
Indices: 10844586--10844638 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10844576 GTTGACTTAT
10844586 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* * *
10844612 GCATATGTAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
10844638 G
1 G
10844639 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:10845086 original size:158 final size:158
Alignment explanation
Indices: 10844612--10845113 Score: 586
Period size: 158 Copynumber: 3.2 Consensus size: 158
10844602 CCTAGTCTAA
* * * *
10844612 GCATATGTAGTTCATTCC-TAGTCTAAGATCGGACTGGACTGAGGGTTGCGGTAGTAGGATCGAC
1 GCATATGGAGTTCATTCCAT-GTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGTAGGATCGAC
* * * **
10844676 AGCACGCAGGGGGGACCGGGTCGATCCCTAACTTGTGCATTCTGCCTCTCCGATCGGTTGAGCGC
65 AGCACGCAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGC
10844741 CCGCACGCC-CGTTTCATGGGTTGGCTTAG
130 CCGCAC-CCTCGTTTCATGGGTTGGCTTAG
* * * * *
10844770 GCATAGGGAGTTCATTCCATGTCTAAG-TCCCAG-TCGGACTAAGGGTTGTGGCAGTGGGA-CTG
1 GCATATGGAGTTCATTCCATGTCTAAGAT--CAGACCGGACTGAGGGTTGCGGCAGTAGGATC-G
* * * * * *
10844832 GCAACACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGATC-AGCTCA
63 ACAGCACGCAG-GGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGA-CTGA
* ** * *
10844896 GCTCCCGCATACTTGTTTCATGGGTTGCCTTAG
126 GCGCCCGCACCCTCGTTTCATGGGTTGGCTTAG
* *
10844929 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
1 GCATATGGAGTTCATT-CCATGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGTAGGATCGAC
* * ** *
10844993 AGCATGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAACGC
65 AGCACGCAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGC
10845058 CCGCACCCTCGTTTCATGGGTTGGCTTAG
130 CCGCACCCTCGTTTCATGGGTTGGCTTAG
*
10845087 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCATGTCTAAG
10845114 CATACGAAGT
Statistics
Matches: 282, Mismatches: 49, Indels: 26
0.79 0.14 0.07
Matches are distributed among these distances:
157 5 0.02
158 149 0.53
159 123 0.44
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGTAGGATCGACA
GCACGCAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCC
CGCACCCTCGTTTCATGGGTTGGCTTAG
Found at i:10845117 original size:26 final size:26
Alignment explanation
Indices: 10845087--10845139 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10845077 GTTGGCTTAG
*
10845087 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
10845113 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10845139 G
1 G
10845140 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10846072 original size:77 final size:77
Alignment explanation
Indices: 10845945--10846087 Score: 198
Period size: 77 Copynumber: 1.9 Consensus size: 77
10845935 GCGTTCTGCA
* * * * *
10845945 TCTCCGATTGGCTGAGTGCCCGCATGCCCATTTCGTGGGTTCGCTTAGGCATAGGGAGTTCATTC
1 TCTCCGATCGGCTCAGTGCCCACATGCCCATTTCATGGGTTCGCTTAGGCATACGGAGTTCATTC
10846010 CTTGTCTATGCC
66 CTTGTCTATGCC
* * *
10846022 TCTCCGGTCGGCTCAGTGCCCACATGCTCATTTTATGGGTT-GACTTAGGCATACGGAGTTCATT
1 TCTCCGATCGGCTCAGTGCCCACATGCCCATTTCATGGGTTCG-CTTAGGCATACGGAGTTCATT
10846086 CC
65 CC
10846088 CAGTCTAAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
76 1 0.02
77 56 0.98
ACGTcount: A:0.15, C:0.27, G:0.26, T:0.32
Consensus pattern (77 bp):
TCTCCGATCGGCTCAGTGCCCACATGCCCATTTCATGGGTTCGCTTAGGCATACGGAGTTCATTC
CTTGTCTATGCC
Found at i:10847010 original size:26 final size:26
Alignment explanation
Indices: 10846974--10847026 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10846964 GTTGACTTAG
10846974 GCATACGGAGTTCAACCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
* **
10847000 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
10847026 G
1 G
10847027 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCCAGTCTAA
Found at i:10847345 original size:26 final size:26
Alignment explanation
Indices: 10847316--10847368 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10847306 GTTGACTTAG
*
10847316 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
10847342 GCATATGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
10847368 G
1 G
10847369 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:10847916 original size:26 final size:26
Alignment explanation
Indices: 10847880--10847932 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10847870 GTTAACCTAG
*
10847880 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* *
10847906 GCATACAAAGTTCATTCCCTGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
10847932 G
1 G
10847933 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:10848436 original size:26 final size:26
Alignment explanation
Indices: 10848406--10848458 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10848396 GTTGACTTAG
10848406 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
10848432 GCATACGGAGTTTATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
10848458 G
1 G
10848459 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10848722 original size:159 final size:158
Alignment explanation
Indices: 10848466--10848763 Score: 382
Period size: 159 Copynumber: 1.9 Consensus size: 158
10848456 AAGATCAAAC
* ** *
10848466 CAGATCGAGGATTGTGATAGCTGGATCGACAGCACGCAGGGGGGACCAAGCTGATCCTCGGCTTA
1 CAGACCGAGGATTGTGATAGCAAGATCGACAGCACGCAGGGGGGACCAAGCTGATCATCGGCTTA
* * * *
10848531 CGCATTATGCCACTCCGACTGGCTGAGTGCCCGCACGCCCGTTTCATGGGTTAGCTTAGGCATAG
66 CGCATTATGCCACTCCGACCGGCTGAGTGCCCGAACGCCCGTTTCATGGGTTAACTTAGGCATAC
10848596 GGAGTTCATTCCACGTCTAAGCCCCAGG
131 GGAGTTCATTCCACGTCTAAGCCCCAGG
* * * * *
10848624 CAGACCGAGGGTTGTGGTAGCAAGATCGACAGCATGCAGAGGGGGATCGAA-TTGATCATCGGCT
1 CAGACCGAGGATTGTGATAGCAAGATCGACAGCACGCAG-GGGGGA-CCAAGCTGATCATCGGCT
* * * * * ** *
10848688 TGCGCATTGTGCCTCTCCGACCGGCTTAGTGCCCGAACGCTCGTTTTGTGGTTTAACTTAGGCAT
64 TACGCATTATGCCACTCCGACCGGCTGAGTGCCCGAACGCCCGTTTCATGGGTTAACTTAGGCAT
10848753 ACGGAGTTCAT
129 ACGGAGTTCAT
10848764 GCCCAGCCTA
Statistics
Matches: 117, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
158 33 0.28
159 81 0.69
160 3 0.03
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
CAGACCGAGGATTGTGATAGCAAGATCGACAGCACGCAGGGGGGACCAAGCTGATCATCGGCTTA
CGCATTATGCCACTCCGACCGGCTGAGTGCCCGAACGCCCGTTTCATGGGTTAACTTAGGCATAC
GGAGTTCATTCCACGTCTAAGCCCCAGG
Found at i:10849148 original size:26 final size:26
Alignment explanation
Indices: 10849112--10849164 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10849102 GTTGACTTAG
10849112 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
10849138 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
10849164 G
1 G
10849165 ATTGAATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10850053 original size:26 final size:26
Alignment explanation
Indices: 10850017--10850069 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10850007 GTAGACTTAG
10850017 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
10850043 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
10850069 G
1 G
10850070 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10851027 original size:155 final size:156
Alignment explanation
Indices: 10850681--10851029 Score: 375
Period size: 155 Copynumber: 2.2 Consensus size: 156
10850671 CTCGTTCGTT
* * *
10850681 GGTT-GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAGGTTGAGGCAG
** * * **
10850745 CGGACCGGTAGCACGTAGAGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGTCGG
66 CGGACCGACAGCACATAGAGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGG
*
10850810 CTCAGCGCCTGCACGCTCATTTCATG
131 CTCAGCGCCTGCACACTCATTTCATG
* * * ** * *
10850836 GGTTGACTTAGGCATATGGAGTTCATTCCCA-ATCTAAG-ATCGGACTAGACCGAAGGTTGAGGC
1 GGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAAGGTTGAGGC
* * * * *
10850899 AGCAGGATCGACAGCACATAGGGGGATCGGGTC-AT-CCCGGCTTGCGCATTCTGCCTCTCCGAC
64 AGC-GGACCGACAGCACATAGAGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGAC
* * * * * * *
10850962 CGGTTGAGTGTCTGTACATTCGTTTCATG
128 CGGCTCAGCGCCTGCACACTCATTTCATG
10850991 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
10851030 ATACGGAGTT
Statistics
Matches: 157, Mismatches: 31, Indels: 11
0.79 0.16 0.06
Matches are distributed among these distances:
154 3 0.02
155 81 0.52
156 47 0.30
157 26 0.17
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (156 bp):
GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAGGTTGAGGCAG
CGGACCGACAGCACATAGAGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGG
CTCAGCGCCTGCACACTCATTTCATG
Found at i:10851032 original size:26 final size:26
Alignment explanation
Indices: 10851002--10851054 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10850992 GTTGGCTTAG
10851002 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
10851028 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10851054 G
1 G
10851055 ATTAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10851241 original size:26 final size:26
Alignment explanation
Indices: 10851211--10851263 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10851201 GTTGACTTAG
10851211 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
10851237 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
10851263 G
1 G
10851264 ATTGAATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:10851424 original size:26 final size:26
Alignment explanation
Indices: 10851395--10851447 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10851385 GTTGGCTTAG
10851395 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
10851421 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10851447 G
1 G
10851448 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10852451 original size:159 final size:157
Alignment explanation
Indices: 10852072--10852590 Score: 408
Period size: 159 Copynumber: 3.3 Consensus size: 157
10852062 CGTACGGTCG
*
10852072 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACTGAGGGTT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTT
* * *
10852137 GCGACAGCAACATCGATAGCACGTAGGGGGACCTGGCCGATCTCCGACTTACGCATTCTGCCTCT
66 GCGACAGCAACATCGATAGCACGTAGGGGGACCTAGCCGATCTCCGACTTACGCATTATACCTCT
** * ** *
10852202 CCGACTGGCTGAGTGCCCTCACACCCG
131 CCGACCAGCTCAGTGCCCGAACACCCA
* * * ** * * *
10852229 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCGGACTAAGGGT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCGGACTGAGGGT
* * * * * *
10852293 TGTGGCAGCGGGAC-T-GGTAGCATGCAG-AGGGGGACCTAGCCGATC-CCTAGCTTGCGCATTA
65 TGCGACAGC--AACATCGATAGCA--C-GTAGGGGGACCTAGCCGATCTCCGA-CTTACGCATTA
* * *
10852354 TACCTCTCTGGCCAGCTCAGTGCCCGAACACTCA
124 TACCTCTCCGACCAGCTCAGTGCCCGAACACCCA
* * *
10852388 TTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTT
* * * * * * * ** * * * *
10852453 GC-AGTAGTAAGATTGATAGCACGCAAAGGGGATCGGGCCGATCTCAGATTTATGCATTCTACCT
66 GCGA-CAGCAACATCGATAGCACG-TAGGGGGACCTAGCCGATCTCCGACTTACGCATTATACCT
* * * * * * *
10852517 CTTC-AGCC-GACTGAGCGCCCGCACGCTCG
129 CTCCGA-CCAG-CTCAGTGCCCGAACACCCA
*
10852546 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
10852591 CATACGGAGT
Statistics
Matches: 280, Mismatches: 65, Indels: 33
0.74 0.17 0.09
Matches are distributed among these distances:
156 4 0.01
157 70 0.25
158 88 0.31
159 114 0.41
160 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (157 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTT
GCGACAGCAACATCGATAGCACGTAGGGGGACCTAGCCGATCTCCGACTTACGCATTATACCTCT
CCGACCAGCTCAGTGCCCGAACACCCA
Found at i:10852600 original size:26 final size:26
Alignment explanation
Indices: 10852564--10852616 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10852554 GTTGGCTTAG
10852564 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
10852590 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10852616 G
1 G
10852617 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10853093 original size:159 final size:158
Alignment explanation
Indices: 10852839--10853143 Score: 434
Period size: 159 Copynumber: 1.9 Consensus size: 158
10852829 AGATCAGATC
* * * *
10852839 GAGGGTTGCAGCAGCAGGATCGGTAGCATGTAGGGGGGACCAGACTGATCCCCAGCTTGGGTATT
1 GAGGGTTGCAGCAGCAGGACCGGTAGCATGCAGGGGGGACCAGACTGATCCCCAGCTTGCGCATT
* * * *
10852904 CTGCCTCTCTGATCGACTGAGCGCCGGCACGCTCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTT
66 CTGCCTCTCTGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
10852969 CATTCCATGTCTAAGCCCCAGCCGGAAT
131 CATTCCATGTCTAAGCCCCAGCCGGAAT
** * *
10852997 GAGGGTTGTGGCAGCAGGACCGGTAGCATGCAGAGGGGGACTAG-GTCGATCCCCAGCTTGCGCA
1 GAGGGTTGCAGCAGCAGGACCGGTAGCATGCAG-GGGGGACCAGACT-GATCCCCAGCTTGCGCA
* **
10853061 TTCTGCCTCTCCT-ACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTTTACGGA
64 TTCTGCCTCT-CTGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
10853125 GTTCATTCCATGTCTAAGC
128 GTTCATTCCATGTCTAAGC
10853144 ATACGGAGTT
Statistics
Matches: 129, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
158 30 0.23
159 97 0.75
160 2 0.02
ACGTcount: A:0.17, C:0.26, G:0.33, T:0.24
Consensus pattern (158 bp):
GAGGGTTGCAGCAGCAGGACCGGTAGCATGCAGGGGGGACCAGACTGATCCCCAGCTTGCGCATT
CTGCCTCTCTGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGCCCCAGCCGGAAT
Found at i:10853155 original size:26 final size:26
Alignment explanation
Indices: 10853119--10853168 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
10853109 GGCTTAGGTT
10853119 TACGGAGTTCATT-CCATGTCTAAGCA
1 TACGGAGTTCATTCCCA-GTCTAAGCA
10853145 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
10853169 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:10855613 original size:14 final size:14
Alignment explanation
Indices: 10855581--10855624 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
10855571 TAGTTATATA
*
10855581 TTTATTATTATTAT
1 TTTATTATTATTTT
*
10855595 ATTATTATTATTTT
1 TTTATTATTATTTT
*
10855609 TTTATAATATATTTT
1 TTTATTAT-TATTTT
10855624 T
1 T
10855625 GGGTTTATCT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
14 18 0.72
15 7 0.28
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTATTATTATTTT
Found at i:10855685 original size:18 final size:18
Alignment explanation
Indices: 10855664--10855698 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10855654 TCTGTTAATT
*
10855664 TTATCTAATTCTTTTTTA
1 TTATCTAATTATTTTTTA
*
10855682 TTATCTGATTATTTTTT
1 TTATCTAATTATTTTTT
10855699 TCTTTTTATC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.09, G:0.03, T:0.69
Consensus pattern (18 bp):
TTATCTAATTATTTTTTA
Found at i:10856664 original size:17 final size:16
Alignment explanation
Indices: 10856628--10856726 Score: 71
Period size: 17 Copynumber: 6.1 Consensus size: 16
10856618 TTAGATTAGG
* * *
10856628 TTTATTTAATATTCTT
1 TTTATTTTATTTTATT
10856644 TTTATCTTTATTTTATT
1 TTTAT-TTTATTTTATT
*
10856661 TTTATTTTTGTTTTACTT
1 TTTA-TTTTATTTTA-TT
10856679 TTT-TTATT-TTTTATT
1 TTTATT-TTATTTTATT
10856694 TTTA-TTTA-TTTATT
1 TTTATTTTATTTTATT
* *
10856708 TTTTTTATTATTCTATT
1 TTTATT-TTATTTTATT
10856725 TT
1 TT
10856727 CTTTAAATAA
Statistics
Matches: 68, Mismatches: 6, Indels: 17
0.75 0.07 0.19
Matches are distributed among these distances:
14 11 0.16
15 7 0.10
16 15 0.22
17 29 0.43
18 6 0.09
ACGTcount: A:0.17, C:0.04, G:0.01, T:0.78
Consensus pattern (16 bp):
TTTATTTTATTTTATT
Found at i:10856681 original size:7 final size:6
Alignment explanation
Indices: 10856642--10856719 Score: 61
Period size: 6 Copynumber: 12.3 Consensus size: 6
10856632 TTTAATATTC
* * *
10856642 TTTTTA TCTTTA -TTTTA TTTTTA TTTTTG TTTTACTT TTTTTA TTTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT--TA TTTTTA -TTTTTA
10856692 TTTTTA TTTATTTA TTTTT- TTTATTA TT
1 TTTTTA -TT-TTTA TTTTTA TTT-TTA TT
10856720 CTATTTTCTT
Statistics
Matches: 59, Mismatches: 5, Indels: 15
0.75 0.06 0.19
Matches are distributed among these distances:
5 7 0.12
6 31 0.53
7 12 0.20
8 9 0.15
ACGTcount: A:0.15, C:0.03, G:0.01, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:10856711 original size:22 final size:22
Alignment explanation
Indices: 10856563--10856712 Score: 71
Period size: 22 Copynumber: 7.0 Consensus size: 22
10856553 CCGCTCCAGG
10856563 TTTTT-TTT-TTT-TTTTTTTA
1 TTTTTATTTATTTATTTTTTTA
* * * * *
10856582 TTTTCATTTCTTTGTTTATTTG
1 TTTTTATTTATTTATTTTTTTA
* * ***
10856604 TTTTTTTTTATTTGTTAGATTA
1 TTTTTATTTATTTATTTTTTTA
** *
10856626 GGTTTATTTA-ATATTCTTTTTA
1 TTTTTATTTATTTATT-TTTTTA
*
10856648 TCTTTATTTTATTT-TTATTTTT-
1 TTTTTA-TTTATTTATT-TTTTTA
* *
10856670 GTTTTACTTTTTTTA-TTTTTTA
1 TTTTTA-TTTATTTATTTTTTTA
10856692 TTTTTATTTATTTATTTTTTT
1 TTTTTATTTATTTATTTTTTT
10856713 TATTATTCTA
Statistics
Matches: 94, Mismatches: 28, Indels: 15
0.69 0.20 0.11
Matches are distributed among these distances:
19 4 0.04
20 3 0.03
21 18 0.19
22 57 0.61
23 11 0.12
24 1 0.01
ACGTcount: A:0.14, C:0.03, G:0.05, T:0.78
Consensus pattern (22 bp):
TTTTTATTTATTTATTTTTTTA
Found at i:10856718 original size:20 final size:19
Alignment explanation
Indices: 10856644--10856725 Score: 69
Period size: 21 Copynumber: 4.2 Consensus size: 19
10856634 TAATATTCTT
* *
10856644 TTTATCTTTATTTTA-TT-
1 TTTATTTTTTTTTTATTTA
* *
10856661 TTTATTTTTGTTTTACTTTT
1 TTTATTTTTTTTTTA-TTTA
10856681 TTTATTTTTTATTTTTATTTA
1 TTTA-TTTTT-TTTTTATTTA
10856702 TTTATTTTTTTTATTATTCTA
1 TTTATTTTTTTT-TTATT-TA
10856723 TTT
1 TTT
10856726 TCTTTAAATA
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
17 13 0.24
19 5 0.09
20 14 0.26
21 17 0.31
22 5 0.09
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.79
Consensus pattern (19 bp):
TTTATTTTTTTTTTATTTA
Found at i:10856718 original size:26 final size:27
Alignment explanation
Indices: 10856644--10856719 Score: 86
Period size: 26 Copynumber: 2.8 Consensus size: 27
10856634 TAATATTCTT
* *
10856644 TTTATCTTTATTTTATTTTTATTTTTGT
1 TTTA-CTTTATTTTTTTTTTATTTTTGA
10856672 TTTACTTT-TTTTATTTTTTATTTTT-A
1 TTTACTTTATTTT-TTTTTTATTTTTGA
10856698 TTTA-TTTATTTTTTTTATTATT
1 TTTACTTTATTTTTTTT-TTATT
10856720 CTATTTTCTT
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
25 7 0.16
26 17 0.40
27 15 0.35
28 4 0.09
ACGTcount: A:0.16, C:0.03, G:0.01, T:0.80
Consensus pattern (27 bp):
TTTACTTTATTTTTTTTTTATTTTTGA
Found at i:10856719 original size:33 final size:34
Alignment explanation
Indices: 10856628--10856719 Score: 88
Period size: 33 Copynumber: 2.8 Consensus size: 34
10856618 TTAGATTAGG
* *
10856628 TTTATTTA-ATATTCTTTTTATCT-TTATTTTATT
1 TTTATTTATTTATTTTTTTTAT-TATTATTTTATT
10856661 TTTATTT-TTGT-TTTACTTTTT-TTATT-TTTTATT
1 TTTATTTATT-TATTT--TTTTTATTATTATTTTATT
10856694 TTTATTTATTTATTTTTTTTATTATT
1 TTTATTTATTTATTTTTTTTATTATT
10856720 CTATTTTCTT
Statistics
Matches: 49, Mismatches: 2, Indels: 16
0.73 0.03 0.24
Matches are distributed among these distances:
32 5 0.10
33 30 0.61
34 9 0.18
35 5 0.10
ACGTcount: A:0.17, C:0.03, G:0.01, T:0.78
Consensus pattern (34 bp):
TTTATTTATTTATTTTTTTTATTATTATTTTATT
Found at i:10856731 original size:26 final size:25
Alignment explanation
Indices: 10856632--10856731 Score: 71
Period size: 25 Copynumber: 3.8 Consensus size: 25
10856622 ATTAGGTTTA
*
10856632 TTTAATATTCTTTTTATCTTTATTTTATT
1 TTTATTATT-TTTTT-TCTTTA-TTT-TT
*
10856661 TTTATT-TTTGTTTTACTTT-TTTTAT
1 TTTATTATTT-TTTTTCTTTATTTT-T
*
10856686 TTT-TTATTTTTATTTATTTATTTTT
1 TTTATTATTTTT-TTTCTTTATTTTT
*
10856711 TTTATTATTCTATTTTCTTTA
1 TTTATTATT-TTTTTTCTTTA
10856732 AATAAAAATC
Statistics
Matches: 58, Mismatches: 6, Indels: 17
0.72 0.07 0.21
Matches are distributed among these distances:
24 5 0.09
25 19 0.33
26 16 0.28
27 7 0.12
28 6 0.10
29 5 0.09
ACGTcount: A:0.17, C:0.05, G:0.01, T:0.77
Consensus pattern (25 bp):
TTTATTATTTTTTTTCTTTATTTTT
Found at i:10856829 original size:57 final size:58
Alignment explanation
Indices: 10856768--10856894 Score: 222
Period size: 57 Copynumber: 2.2 Consensus size: 58
10856758 ATATTTTTAG
10856768 GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAATAAA-TTTC-AAAAAGGGTTTTTGA
1 GGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAATAAATTTTCAAAAAAGGGTTTTTGA
10856825 GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAGGGTTTTTGA
1 GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC-AAAAAAGGGTTTTTGA
10856884 GGAAAAGTTGA
1 GGAAAAGTTGA
10856895 CCAGCCCAAG
Statistics
Matches: 67, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
56 9 0.13
57 32 0.48
59 26 0.39
ACGTcount: A:0.44, C:0.06, G:0.17, T:0.32
Consensus pattern (58 bp):
GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAGGGTTTTTGA
Found at i:10857868 original size:41 final size:41
Alignment explanation
Indices: 10857803--10858178 Score: 569
Period size: 41 Copynumber: 9.1 Consensus size: 41
10857793 GATTGTCAAT
*
10857803 GAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAG
1 GAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAG
* * *
10857845 GAACAATTTACATTTCAAAGTCGTGGTGCCTCTGTTTAGAT
1 GAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
10857886 GAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
1 GAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
*
10857927 GAGAAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
1 GAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAGAG
10857969 GAGCAATTTA-TTTTCCAAAGTCGTGGTGCCTCTGTTTAGAG
1 GAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAGAG
*
10858010 GAGCAATTTA-TTTTCCAAAGTCGTGGTGCCTCTGTTTAAAG
1 GAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAGAG
*
10858051 GAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
1 GAGCAATTT-ACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
* * *
10858093 GAGCAATTTATTTTTCAAAGTTGTGATGCCTCTGTTTAGAG
1 GAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
* *
10858134 GAGCAATTTACTTTTCAAAGTCGTTGAGCCTGC-GTTTAGAG
1 GAGCAATTTACTTTTCAAAGTCGTGGTGCCT-CTGTTTAGAG
10858175 GAGC
1 GAGC
10858179 TTTGGTAAAA
Statistics
Matches: 312, Mismatches: 18, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
41 224 0.72
42 84 0.27
43 4 0.01
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.36
Consensus pattern (41 bp):
GAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
Found at i:10857956 original size:83 final size:82
Alignment explanation
Indices: 10857803--10858177 Score: 551
Period size: 83 Copynumber: 4.5 Consensus size: 82
10857793 GATTGTCAAT
* *
10857803 GAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGA-ACAATTTACATTT-CAAAGT
1 GAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAGGAGA-AATTTA-TTTTCCAAAGT
*
10857866 CGTGGTGCCTCTGTTTAGAT
63 CGTGGTGCCTCTGTTTAGAG
10857886 GAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGAAATTTACTTTTCCAAAGTCG
1 GAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGAAATTTA-TTTTCCAAAGTCG
10857951 TGGTGCCTCTGTTTAGAG
65 TGGTGCCTCTGTTTAGAG
*
10857969 GAGCAATTTA-TTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTCG
1 GAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAGAGGAGAAATTTATTTTCCAAAGTCG
*
10858033 TGGTGCCTCTGTTTAAAG
65 TGGTGCCTCTGTTTAGAG
* * * *
10858051 GAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTG
1 GAGCAATTT-ACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGAAATTTATTTTCCAAAGTCG
*
10858116 TGATGCCTCTGTTTAGAG
65 TGGTGCCTCTGTTTAGAG
* *
10858134 GAGCAATTTACTTTTCAAAGTCGTTGAGCCTGC-GTTTAGAGGAG
1 GAGCAATTTACTTTTCAAAGTCGTGGTGCCT-CTGTTTAGAGGAG
10858178 CTTTGGTAAA
Statistics
Matches: 274, Mismatches: 12, Indels: 13
0.92 0.04 0.04
Matches are distributed among these distances:
82 110 0.40
83 160 0.58
84 4 0.01
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.36
Consensus pattern (82 bp):
GAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGAAATTTATTTTCCAAAGTCGT
GGTGCCTCTGTTTAGAG
Found at i:10858178 original size:124 final size:124
Alignment explanation
Indices: 10857803--10858178 Score: 578
Period size: 124 Copynumber: 3.0 Consensus size: 124
10857793 GATTGTCAAT
* * **
10857803 GAGCAATTT-ACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGGAACAATTTACATTTCAAAGTC
1 GAGCAATTTAATTTTCC-AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTC
*
10857867 GTGGTGCCTCTGTTTAGATGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
65 GTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
* * *
10857927 GAGAAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTCG
1 GAGCAATTTAATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCG
*
10857992 TGGTGCCTCTGTTTAGAGGAGCAATTTA-TTTTCCAAAGTCGTGGTGCCTCTGTTTAAAG
66 TGGTGCCTCTGTTTAGAGGAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAGAG
* *
10858051 GAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTG
1 GAGCAATTTAATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCG
* * *
10858116 TGATGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTTGAGCCTGC-GTTTAGAG
66 TGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCT-CTGTTTAGAG
10858175 GAGC
1 GAGC
10858179 TTTGGTAAAA
Statistics
Matches: 230, Mismatches: 18, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
123 4 0.02
124 216 0.94
125 10 0.04
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.36
Consensus pattern (124 bp):
GAGCAATTTAATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCG
TGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
Found at i:10858191 original size:1 final size:1
Alignment explanation
Indices: 10858185--10858253 Score: 66
Period size: 1 Copynumber: 69.0 Consensus size: 1
10858175 GAGCTTTGGT
* * * * * * * *
10858185 AAAAAAAAAAAACAAAAAAACAAAAAAAAAAACAAAAAAAAACACAAAAAAAATACAAAAAACAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
10858250 AAAA
1 AAAA
10858254 TGACAATGTT
Statistics
Matches: 52, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 52 1.00
ACGTcount: A:0.88, C:0.10, G:0.00, T:0.01
Consensus pattern (1 bp):
A
Found at i:10858203 original size:12 final size:12
Alignment explanation
Indices: 10858185--10858252 Score: 86
Period size: 12 Copynumber: 5.8 Consensus size: 12
10858175 GAGCTTTGGT
10858185 AAAAAAAAA-AA
1 AAAAAAAAACAA
*
10858196 ACAAAAAAACAA
1 AAAAAAAAACAA
10858208 AAAAAAAAACAA
1 AAAAAAAAACAA
*
10858220 AAAAAAACAC-A
1 AAAAAAAAACAA
*
10858231 AAAAAAATACAA
1 AAAAAAAAACAA
10858243 AAAACAAAAA
1 AAAA-AAAAA
10858253 ATGACAATGT
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
11 18 0.37
12 27 0.55
13 4 0.08
ACGTcount: A:0.88, C:0.10, G:0.00, T:0.01
Consensus pattern (12 bp):
AAAAAAAAACAA
Found at i:10858211 original size:20 final size:20
Alignment explanation
Indices: 10858186--10858253 Score: 93
Period size: 20 Copynumber: 3.3 Consensus size: 20
10858176 AGCTTTGGTA
10858186 AAAAAAAAAAACAAAAAAAC
1 AAAAAAAAAAACAAAAAAAC
10858206 AAAAAAAAAAACAAAAAAA-
1 AAAAAAAAAAACAAAAAAAC
*
10858225 AACACAAAAAAAATACAAAAAAC
1 AA-A-AAAAAAAACA-AAAAAAC
10858248 AAAAAA
1 AAAAAA
10858254 TGACAATGTT
Statistics
Matches: 43, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
19 2 0.05
20 20 0.47
21 12 0.28
22 7 0.16
23 2 0.05
ACGTcount: A:0.88, C:0.10, G:0.00, T:0.01
Consensus pattern (20 bp):
AAAAAAAAAAACAAAAAAAC
Found at i:10858224 original size:30 final size:30
Alignment explanation
Indices: 10858188--10858253 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
10858178 CTTTGGTAAA
* *
10858188 AAAAAAAAACAAAAAAACAAAAAAAAAAAC
1 AAAAAAAAACACAAAAAAAAAAAAAAAAAC
* *
10858218 AAAAAAAAACACAAAAAAAATACAAAAAAC
1 AAAAAAAAACACAAAAAAAAAAAAAAAAAC
10858248 AAAAAA
1 AAAAAA
10858254 TGACAATGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.88, C:0.11, G:0.00, T:0.02
Consensus pattern (30 bp):
AAAAAAAAACACAAAAAAAAAAAAAAAAAC
Found at i:10858594 original size:18 final size:19
Alignment explanation
Indices: 10858573--10858608 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
10858563 TCTGTTAATT
10858573 TTATCTAATT-TTTTTTTA
1 TTATCTAATTATTTTTTTA
*
10858591 TTATCTGATTATTTTTTT
1 TTATCTAATTATTTTTTT
10858609 TCTTTTTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.19, C:0.06, G:0.03, T:0.72
Consensus pattern (19 bp):
TTATCTAATTATTTTTTTA
Found at i:10859567 original size:22 final size:22
Alignment explanation
Indices: 10859534--10859619 Score: 63
Period size: 22 Copynumber: 3.9 Consensus size: 22
10859524 TTTAATATTC
10859534 TTTTTATCTTTATTTTATTTTAA
1 TTTTTAT-TTTATTTTATTTTAA
* * *
10859557 TTTTTGTTTTACTTTT-CTTTAT
1 TTTTTATTTTA-TTTTATTTTAA
10859579 TTTTTATTTT-TCTTTA-TTT-A
1 TTTTTATTTTAT-TTTATTTTAA
* *
10859599 TTTTTTTTATTATTATATTTT
1 TTTTTATT-TTATTTTATTTT
10859620 CTTTAAATAA
Statistics
Matches: 50, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
20 8 0.16
21 11 0.22
22 21 0.42
23 10 0.20
ACGTcount: A:0.16, C:0.05, G:0.01, T:0.78
Consensus pattern (22 bp):
TTTTTATTTTATTTTATTTTAA
Found at i:10859600 original size:14 final size:15
Alignment explanation
Indices: 10859535--10859624 Score: 76
Period size: 17 Copynumber: 5.7 Consensus size: 15
10859525 TTAATATTCT
10859535 TTTTATCTTTATTTTA
1 TTTT-TCTTTATTTTA
* *
10859551 TTTTAATTTTTGTTTTA
1 TTTT--TCTTTATTTTA
*
10859568 CTTTTCTTTATTTTTTA
1 TTTTTCTTTA--TTTTA
10859585 TTTTTCTTTA-TTTA
1 TTTTTCTTTATTTTA
10859599 TTTTT-TTTATTATTA
1 TTTTTCTTTATT-TTA
10859614 TATTTTCTTTA
1 T-TTTTCTTTA
10859625 AATAAAAATC
Statistics
Matches: 61, Mismatches: 6, Indels: 13
0.76 0.08 0.16
Matches are distributed among these distances:
13 4 0.07
14 10 0.16
15 8 0.13
16 8 0.13
17 31 0.51
ACGTcount: A:0.17, C:0.06, G:0.01, T:0.77
Consensus pattern (15 bp):
TTTTTCTTTATTTTA
Found at i:10859617 original size:21 final size:21
Alignment explanation
Indices: 10859574--10859618 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
10859564 TTTACTTTTC
* *
10859574 TTTATTTTTTATTTTTCTTTA
1 TTTATTTTTTATTATTATTTA
10859595 TTTATTTTTT-TTATTATTATA
1 TTTATTTTTTATTATTATT-TA
10859616 TTT
1 TTT
10859619 TCTTTAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTATTTTTTATTATTATTTA
Found at i:10859708 original size:57 final size:57
Alignment explanation
Indices: 10859627--10859920 Score: 376
Period size: 57 Copynumber: 5.0 Consensus size: 57
10859617 TTTCTTTAAA
* *
10859627 TAAAAATCAAAATTTCCAAAAAAAAATTTTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT--AAATTT-CAAAAAAATA-TTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCT
*** *
10859689 TAAAAAATAAATTTC-AAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATTAATTTTCCT
1 T-AAAAATAAATTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
*
10859746 TAAAAATAAATTTTCAAAAAAAGGA-TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAA-TTTCAAAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
*
10859804 TGAAAATCAAAATTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT--AAATTTC-AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
* * *
10859864 TAAAAATAAATTTCCAAAAAATACTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
10859921 ACACAAGAAC
Statistics
Matches: 210, Mismatches: 14, Indels: 21
0.86 0.06 0.09
Matches are distributed among these distances:
56 9 0.04
57 71 0.34
58 56 0.27
59 11 0.05
60 50 0.24
61 6 0.03
62 1 0.00
63 6 0.03
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.34
Consensus pattern (57 bp):
TAAAAATAAATTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:10859968 original size:6 final size:6
Alignment explanation
Indices: 10859953--10859986 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
10859943 CTTTCTTTCT
* *
10859953 ATTTTC ATTTTG ATTTTG ATTTTG ATTTTT ATTT
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTT
10859987 AACTAATCCG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.18, C:0.03, G:0.09, T:0.71
Consensus pattern (6 bp):
ATTTTG
Found at i:10865215 original size:158 final size:157
Alignment explanation
Indices: 10864680--10865250 Score: 542
Period size: 157 Copynumber: 3.6 Consensus size: 157
10864670 CAGCCGTTCA
* * ** ** * **
10864680 ATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGCTTGCATGCTCGTTTCGTGCATTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * *
10864745 ACTTAGGCATACGAAGTTCATTCCTA-GTCTAAGACTGGACCAGA-TGAGGGTTACGGCAGTAGG
66 ACTTAGGCATACGAAGTTCATTCC-ACGTCTAAGAC-GGATCGGACCGAGGGTTGCGGCAGTAGG
* *
10864808 ATCGACAGCACACAGGGGGGA-CTGGGCCA
129 ATCGACAGCACGCAGGGGGGATC-GGGCCG
* * *
10864837 ATCTCCGGCTTGCGCATTCTGCCTC-CCTGACCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTT
1 ATCCCCGGCTTGCGCATTCTGCCTCTCC-GACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * * ** * * ***
10864901 GGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCTAGTCGGACCGAGGGTCGTGGCAACGGG
65 GACTTAGGCATACGAAGTTCATTCCACGTCTAAGACGGA-TCGGACCGAGGGTTGCGGCAGTAGG
* ** *
10864966 ACCGGTAGCACGCAGAGTGGGATCGGGCCG
129 ATCGACAGCACGCAG-GGGGGATCGGGCCG
* * * * * * * *
10864996 ATCCCCGGTTTGTGCATTATACCTTTCCGACCGGCTCAGCGCCCGCATGCTCG-TTCATGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* *
10865060 ACTTAGGCATTCAAAGTTCATTCC-CAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGTAGG
66 ACTTAGGCATACGAAGTTCATTCCAC-GTCTAAGA-CGGATCGGACCGAGGGTTGCGGCAGTAGG
* * * *
10865124 ATTGACAGCATGCAGGGGGGATCGGACTG
129 ATCGACAGCACGCAGGGGGGATCGGGCCG
* ** * *
10865153 ATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGTTCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* *
10865218 GCTTAGGCATACGAAGTTCATTCCATGTCTAAG
66 ACTTAGGCATACGAAGTTCATTCCACGTCTAAG
10865251 CATACGGTGT
Statistics
Matches: 321, Mismatches: 82, Indels: 21
0.76 0.19 0.05
Matches are distributed among these distances:
156 3 0.01
157 136 0.42
158 127 0.40
159 52 0.16
160 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (157 bp):
ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
ACTTAGGCATACGAAGTTCATTCCACGTCTAAGACGGATCGGACCGAGGGTTGCGGCAGTAGGAT
CGACAGCACGCAGGGGGGATCGGGCCG
Found at i:10865477 original size:195 final size:195
Alignment explanation
Indices: 10865130--10865493 Score: 498
Period size: 195 Copynumber: 1.9 Consensus size: 195
10865120 TAGGATTGAC
* * ** *
10865130 AGCATGCAGGGGGGATCGGACTGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGTTGAGCGC
1 AGCACGCAGGGGGGATCGGACTGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGTTGAGCAC
* * * *
10865195 CCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGTG
66 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCATGTCTAAGCATACGGAG
*
10865260 TCCATTCCCAGTCTAAGATCAGACC-GAACCGAGGGTTGCAACAGCAGGACTAGCAGTAGATCGG
131 TCCATTCCCAATCTAAGATCAGACCAG-ACCGAGGGTTGCAACAGCAGGACTAGCAGTAGATCGG
10865324 T
195 T
** ** *
10865325 AGCACGCAGGGGGGATCGGGTTGATCCCCGACTTGTGTATTCTGCCTCTCCGACCGGTTGAGCAC
1 AGCACGCAGGGGGGATCGGACTGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGTTGAGCAC
* * * *
10865390 CTGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCA-GTCTAAGCGTATGGA
66 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT-CCCATGTCTAAGCATACGGA
* * *
10865454 GTGCATTCCCAATCTACGATCAGACCAGATCGAGGGTTGC
130 GTCCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGC
10865494 GGCAACAAGA
Statistics
Matches: 145, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
195 141 0.97
196 4 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (195 bp):
AGCACGCAGGGGGGATCGGACTGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGTTGAGCAC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCATGTCTAAGCATACGGAG
TCCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAACAGCAGGACTAGCAGTAGATCGGT
Found at i:10865955 original size:26 final size:26
Alignment explanation
Indices: 10865919--10865971 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10865909 GTTGGCTTAG
10865919 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
10865945 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10865971 G
1 G
10865972 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10866678 original size:158 final size:159
Alignment explanation
Indices: 10866297--10866714 Score: 439
Period size: 158 Copynumber: 2.6 Consensus size: 159
10866287 TTTTCAAAGG
* * * *
10866297 CCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGTGCCCGCACGCCCGTTTCGTGGG
1 CCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * * *
10866362 TTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCTAGTCGGACCGAGGGTCGTGGCAACG
66 TTGGCTTAGGCATACGAAGTTCATTCCACGTCTAAGCCCGAGTCGGACCGAGGGTCGCGGCAACA
** * *
10866427 GGACCGGTAGCACGCAGAGTGGGATCGGG
131 GGACCGACAGCACGCAGAGGGGGATCGGA
* * * * * * * * *
10866456 CCGATCCCCGGTTTGTGCATTATACCTTTCCGACCGGCTCAGCGCCCGCATGCTCG-TTCATGGG
1 CCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * ** * *
10866520 TTGACTTAGGCATTCAAAGTTCATTCC-CAGTCTAAGATCG-GATCGGACCGAGGGTTGCGGCAG
66 TTGGCTTAGGCATACGAAGTTCATTCCAC-GTCTAAGCCCGAG-TCGGACCGAGGGTCGCGGCAA
* ** *
10866583 TAGGATTGACAGCATGCAG-GGGGGATCGGA
129 CAGGACCGACAGCACGCAGAGGGGGATCGGA
* * * * *
10866613 CTGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGTTCGTTTCGTGGG
1 CCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
*
10866678 TTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
66 TTGGCTTAGGCATACGAAGTTCATTCCACGTCTAAGC
10866715 ATACGGTGTC
Statistics
Matches: 203, Mismatches: 52, Indels: 9
0.77 0.20 0.03
Matches are distributed among these distances:
157 54 0.27
158 105 0.52
159 44 0.22
ACGTcount: A:0.16, C:0.28, G:0.31, T:0.24
Consensus pattern (159 bp):
CCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
TTGGCTTAGGCATACGAAGTTCATTCCACGTCTAAGCCCGAGTCGGACCGAGGGTCGCGGCAACA
GGACCGACAGCACGCAGAGGGGGATCGGA
Found at i:10866940 original size:195 final size:195
Alignment explanation
Indices: 10866593--10866956 Score: 498
Period size: 195 Copynumber: 1.9 Consensus size: 195
10866583 TAGGATTGAC
* * ** *
10866593 AGCATGCAGGGGGGATCGGACTGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGTTGAGCGC
1 AGCACGCAGGGGGGATCGGACTGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGTTGAGCAC
* * * *
10866658 CCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGTG
66 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCATGTCTAAGCATACGGAG
*
10866723 TCCATTCCCAGTCTAAGATCAGACC-GAACCGAGGGTTGCAACAGCAGGACTAGCAGTAGATCGG
131 TCCATTCCCAATCTAAGATCAGACCAG-ACCGAGGGTTGCAACAGCAGGACTAGCAGTAGATCGG
10866787 T
195 T
** ** *
10866788 AGCACGCAGGGGGGATCGGGTTGATCCCCGACTTGTGTATTCTGCCTCTCCGACCGGTTGAGCAC
1 AGCACGCAGGGGGGATCGGACTGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGTTGAGCAC
* * * *
10866853 CTGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCA-GTCTAAGCGTATGGA
66 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT-CCCATGTCTAAGCATACGGA
* * *
10866917 GTGCATTCCCAATCTACGATCAGACCAGATCGAGGGTTGC
130 GTCCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGC
10866957 GGCAACAAGA
Statistics
Matches: 145, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
195 141 0.97
196 4 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (195 bp):
AGCACGCAGGGGGGATCGGACTGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGTTGAGCAC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCATGTCTAAGCATACGGAG
TCCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAACAGCAGGACTAGCAGTAGATCGGT
Found at i:10867300 original size:158 final size:159
Alignment explanation
Indices: 10866908--10867408 Score: 375
Period size: 158 Copynumber: 3.2 Consensus size: 159
10866898 CCCAGTCTAA
* * * * * *
10866908 GCGTATGGAGTGCATTCCCAATCTACGATCAGACCAGATCGAGGGTTGC-GGCAACAAGATCGAC
1 GCGTATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGGCAGCAAGATCGAC
* * * * * *
10866972 AGCACGC-AGGTGGGATCGGGTCGATCCTTAGCTTGCGCATTCTGCCTCTCCAGTCGACTGAGCG
66 AGCACACAAGG-GGGATCGGGTCGATCCCTAGCTTGCGCATTATGCCTCTCCAGCCGACTCAACG
* *
10867036 CCCGTACGTCCGTTTCATGGGTGGGCTTAG
130 CCCGTACCTCCGTTTCATGGGTGGACTTAG
* ** * * * *
10867066 GCATATGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGGCTGA-GGTT--ATGGCAGTC-GGAC
1 GCGTATGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCA-GGCAG-CAAGAT
* * ***
10867125 CGACAGCACATAGAGGGGGATCGGGTCGATCCCTGGCTTAG-GCATTATGCCTCTTTGGCCGACT
62 CGACAGCACACA-AGGGGGATCGGGTCGATCCCTAGCTT-GCGCATTATGCCTCTCCAGCCGACT
* * * *
10867189 CAACGCCCGTACACT-CGTTTCGTTGGTTGACTTAT
125 CAACGCCCGTAC-CTCCGTTTCATGGGTGGACTTAG
*
10867224 GCGTACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGG-AGCAAGATCGAC
1 GCGTATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGGCAGCAAGATCGAC
* *** * * * * * *
10867288 AGCACACAAGGGGGACCGAACCGATCCCCTA-CTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCG
66 AGCACACAAGGGGGATCGGGTCGAT-CCCTAGCTTGCGCATTATGCCTCTCCAGCCGACTCAACG
* * *
10867352 CCCGCACGCT-CATTTCGTGGGTTGG-CTTAG
130 CCCGTAC-CTCCGTTTCATGGG-TGGACTTAG
* *
10867382 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCGTATGGAGTTCATTCCCA-GTCTAAG
10867409 TATACGAAGT
Statistics
Matches: 266, Mismatches: 58, Indels: 38
0.73 0.16 0.10
Matches are distributed among these distances:
157 29 0.11
158 198 0.74
159 36 0.14
160 2 0.01
161 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
GCGTATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGGCAGCAAGATCGAC
AGCACACAAGGGGGATCGGGTCGATCCCTAGCTTGCGCATTATGCCTCTCCAGCCGACTCAACGC
CCGTACCTCCGTTTCATGGGTGGACTTAG
Found at i:10867420 original size:26 final size:26
Alignment explanation
Indices: 10867384--10867434 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
10867374 TGGCTTAGGC
*
10867384 ATACGGAGTTCATT-CCATGTCTAAGT
1 ATACGAAGTTCATTCCCA-GTCTAAGT
10867410 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
10867435 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGT
Found at i:10868165 original size:158 final size:159
Alignment explanation
Indices: 10867756--10868176 Score: 433
Period size: 159 Copynumber: 2.7 Consensus size: 159
10867746 GATTTTCAAA
* * *
10867756 GGTCGATCCCTGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCCCGTTTCGTG
1 GGTCGATCCC-CGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * * *
10867821 GGTTGGCTTAGGCATAGGGAGTTCATT-CTATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCA
65 GGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGCCCCAGTCGAACCGAGGGTTGTGACA
* *
10867885 GCAGGACCGGCAGCACGCAGAGGGGGACCG
130 GCAGGACCGACAGCACGCAGAGGGGGAACG
* * * * * * *
10867915 GGTCGATCCTCGACTTGCGCATTATGCCTCTCCGGCTGGCTCAGTGCCCGCATGCTCATTTCGTG
1 GGTCGATCCCCG-CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* ** * ** * *
10867980 GGTTGACTTAGGCATACAAAGTACATTCCCA-GTCTAAG-ATCGGATCGAACTGAGGGTT-TCGA
65 GGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGCCCCAG-TCGAACCGAGGGTTGT-GA
* *
10868042 CAGCAGGATCGACAGCACGTA-AGGGGGAACG
128 CAGCAGGACCGACAGCACGCAGAGGGGGAACG
* * * * **
10868073 GG-CTGATCCCCAGCTTGCGCATTCTGCCTCTCTGACCGTCTGAGCACCCGCACGCTCGTTTTAT
1 GGTC-GATCCCC-GCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* *
10868137 GGGTTGGCTTATGCATACGGAGTTCATT-CGATGTCTAAGC
64 GGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGC
10868177 AAACGGAGTT
Statistics
Matches: 209, Mismatches: 45, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 90 0.43
159 114 0.55
160 2 0.01
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.24
Consensus pattern (159 bp):
GGTCGATCCCCGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
GTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGCCCCAGTCGAACCGAGGGTTGTGACAG
CAGGACCGACAGCACGCAGAGGGGGAACG
Found at i:10868575 original size:23 final size:22
Alignment explanation
Indices: 10868524--10868590 Score: 107
Period size: 23 Copynumber: 3.0 Consensus size: 22
10868514 TCAGTTCACT
*
10868524 TAGGGATACAAAGTTCATTCCC
1 TAGGCATACAAAGTTCATTCCC
*
10868546 TAGGCATACAAAGTTCATTCGTC
1 TAGGCATACAAAGTTCATTC-CC
10868569 TAGGCATACAAAGTTCATTCCC
1 TAGGCATACAAAGTTCATTCCC
10868591 AGTCTAAGAT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
22 20 0.49
23 21 0.51
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.28
Consensus pattern (22 bp):
TAGGCATACAAAGTTCATTCCC
Found at i:10869048 original size:25 final size:26
Alignment explanation
Indices: 10869006--10869057 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
10868996 GTTGGCTTAG
*
10869006 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
10869032 GCATAC-GAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
10869057 G
1 G
10869058 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:10869209 original size:183 final size:185
Alignment explanation
Indices: 10868847--10869216 Score: 476
Period size: 183 Copynumber: 2.0 Consensus size: 185
10868837 GTTGACTTAG
* * *
10868847 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTCCGGTAGCAAGATCAATA
1 GCATACAGAGCTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTCCGGCAGCAAGATCAATA
* * * * * *
10868912 GAACACAGGGGGGATCGGGTCGATCCCCCGGCTTGCACATTCTACCTCTCTGACCGGCTGGGCGC
66 GAACACAGGGGGGACCAGGCCAATCCCCCGGCTTGCACATTCTACCTCTCTGACAGGCTGAGCGC
* * * *
10868977 CTGTACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CCGTACGCTCATTTTATGGGTGGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * **
10869032 GCATAC-GAGCTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGGTA
1 GCATACAGAGCTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTCCGGCAGCAAGATCAATA
* * * ** * * *
10869096 GCACGCAGGGGGGACCAGGCCAAT-CCTCGGCTTGCGTATTTTGCCTCTCTGATAGGCTGAGCGC
66 GAACACAGGGGGGACCAGGCCAATCCCCCGGCTTGCACATTCTACCTCTCTGACAGGCTGAGCGC
*
10869160 CCGCT-CGCTCATTTTGTGGGTGGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
131 CCG-TACGCTCATTTTATGGGTGGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
10869215 GC
1 GC
10869217 CCCAGCCAGA
Statistics
Matches: 158, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
183 82 0.52
184 70 0.44
185 6 0.04
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (185 bp):
GCATACAGAGCTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTCCGGCAGCAAGATCAATA
GAACACAGGGGGGACCAGGCCAATCCCCCGGCTTGCACATTCTACCTCTCTGACAGGCTGAGCGC
CCGTACGCTCATTTTATGGGTGGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:10869754 original size:159 final size:157
Alignment explanation
Indices: 10869399--10869761 Score: 399
Period size: 159 Copynumber: 2.3 Consensus size: 157
10869389 CCTAGTCTAA
* * * **
10869399 GCATACGGAGTTTATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGAATCAGACCGAGGGTCATGGCAGCAGGATCGACA
* * * * *
10869464 GCACGCAGAGGGGACCGGGCCGATATCAGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCC
65 GCACACAAAGGGGACCGGGCCGATACCAGGCTTACGCATTATGCCTCTCCGACCGGCTCAGCGCC
*
10869529 TGCACGCCCGTTTCATGGGTTGGCTTAG
130 TGCACGCCCGTTTCATGGGTTGACTTAG
* ** * ** *
10869557 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTCATGGCAGCGGGA-CTGAC
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGAATCAGACCGAGGGTCATGGCAGCAGGATC-GAC
* * * * * *
10869621 AGCACACAAAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGA-CGGGTACAGC
64 AGCACACAAA-GGGGACCGGGCCGATACCAGGCTTACGCATTATGCCTCTCCGACCGGCT-CAGC
* *
10869685 GCAC-GCACGCTCGTTTCATGGGTTGACTTAT
127 GC-CTGCACGCCCGTTTCATGGGTTGACTTAG
*
10869716 GCATACGGAGTTCATTCCTAGTCTAAGATCGAATCAGACTGAGGGT
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGAATCAGACCGAGGGT
10869762 TGCTGCTGCA
Statistics
Matches: 166, Mismatches: 33, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
157 4 0.02
158 58 0.35
159 102 0.61
160 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.21
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGAATCAGACCGAGGGTCATGGCAGCAGGATCGACAG
CACACAAAGGGGACCGGGCCGATACCAGGCTTACGCATTATGCCTCTCCGACCGGCTCAGCGCCT
GCACGCCCGTTTCATGGGTTGACTTAG
Found at i:10871892 original size:26 final size:26
Alignment explanation
Indices: 10871849--10871898 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
10871839 GACTTAGGCA
10871849 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGGAGTTCATCCCCAGTCTAAGCG
* **
10871875 TACGGAGTTTATTTCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
10871899 ATCAGACCGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCG
Found at i:10872349 original size:26 final size:26
Alignment explanation
Indices: 10872319--10872374 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
10872309 TGGGTTGGCT
* *
10872319 TAAGCATATGGAGTTCATTCCATGTC
1 TAAGCATACGGAGTTCATTCCATATC
* *
10872345 TAAGCATGCGGAGTTCATTCCCTATC
1 TAAGCATACGGAGTTCATTCCATATC
10872371 TAAG
1 TAAG
10872375 ATTTTGAGCT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCATATC
Found at i:10874097 original size:26 final size:26
Alignment explanation
Indices: 10874068--10874120 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10874058 GTTGACTTAG
10874068 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
10874094 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
10874120 G
1 G
10874121 ATCAGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10874222 original size:184 final size:184
Alignment explanation
Indices: 10873910--10874279 Score: 447
Period size: 184 Copynumber: 2.0 Consensus size: 184
10873900 GTTAACTTAG
* * * *
10873910 GCATACGGAGCTCATCCCCAGTCTAAGATCGGACCAGACTGACGGATGCACCAGTAGGATCGGCA
1 GCATACGGAGCTCATCCCCAGTCTAAGATCAGACCAAACTGACGGATACACCAGTAGGATCGACA
* ** *
10873975 GCACACAGGGGGGACCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCACCCGGCTGAGCGCA
66 GCACACAAGGGGGACCGGGCCAATCCCCAGCTTACGCATTCTGCCTCTCCACCCGGCTGAGCGCA
* *
10874040 TGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAA
131 TGCACGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAA
* * * * * *
10874094 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTACGA-TAGTAGGATCGAT
1 GCATACGGAGCTCATCCCCAGTCTAAGATCAGACCAAACTGACGGATAC-ACCAGTAGGATCGAC
* * * * ** * *
10874158 AGCACGCAAGGGGGACTGGGCCGATCCCCAGCTTATGCATTCTGCCTCTCCGGCTGGTTGAGCGC
65 AGCACACAAGGGGGACCGGGCCAATCCCCAGCTTACGCATTCTGCCTCTCCACCCGGCTGAGCGC
* * * * *
10874223 CTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
130 ATGCACGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
10874278 GC
1 GC
10874280 CCCAGCTGGA
Statistics
Matches: 155, Mismatches: 29, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
183 3 0.02
184 151 0.97
185 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.22
Consensus pattern (184 bp):
GCATACGGAGCTCATCCCCAGTCTAAGATCAGACCAAACTGACGGATACACCAGTAGGATCGACA
GCACACAAGGGGGACCGGGCCAATCCCCAGCTTACGCATTCTGCCTCTCCACCCGGCTGAGCGCA
TGCACGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
Found at i:10874447 original size:26 final size:26
Alignment explanation
Indices: 10874411--10874463 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10874401 GTTGGCTTAG
10874411 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
10874437 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
10874463 G
1 G
10874464 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:10875161 original size:26 final size:26
Alignment explanation
Indices: 10875131--10875183 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10875121 GTTGACTTAG
*
10875131 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10875157 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10875183 G
1 G
10875184 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10875507 original size:159 final size:159
Alignment explanation
Indices: 10875208--10876123 Score: 844
Period size: 159 Copynumber: 5.8 Consensus size: 159
10875198 AGGGTTACGG
* * ** * * * *
10875208 CAGCACGTAG-GGGGGACCAGGCCGATCCCCGGCTTGTACATTCTGCTTGTCCGACTGGCTGAGT
1 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
*
10875272 GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA-GGTAGTTCATTCCATGTCTAAGCCCCAG
66 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGG-AGTTCATTCCATGTCTAAG-CCCAG
* * *
10875336 -CCAGACCGAGGGTTGTGGCAACGGGACCGA
129 ATCGGACCGAGGGTTGTGGCAGCGGGACCGA
* * * * * * * ** *
10875366 CAGCACGCAGAGGGGGATCGGGCCGTTCCTCGACTTGTGCATTATGCCTTTCCGATTGGCTCAGC
1 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* * **
10875431 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATCAGA
66 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCAGA
** * * * *
10875495 TCGGACCGAGGGTTACGACGGCAGGATCGA
130 TCGGACCGAGGGTTGTGGCAGCGGGACCGA
* * * * * **
10875525 TAGCACGTA-AGGGGGGACCGGGCTGAGCCACGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAG
1 CAGCACGCAGA-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAG
* * ** * * * * *
10875589 CACCTGTGCGCCCATTTCATGGGTTGGCATAGGCTTAGGGAGTTCATTCCATGTCTAAGCCCCA-
65 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCAG
* * *
10875653 ATCGGACCGACGGTTGTGGCAGCGGGACTGG
129 ATCGGACCGAGGGTTGTGGCAGCGGGACCGA
* * * * * * * * * * *
10875684 TAGCACGCAGAGGGCGATCGAGTCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGT
1 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* * * * ** **
10875749 GCCCGTACGCTCGTTTCATGGGTTGACTTAGGCGTACGAAGTTCATTCCCGGTCTAAGATCAGAT
66 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGAT
** **
10875814 CGGA-CGAGGGTTGTGGCAGTAGGATTGA
131 CGGACCGAGGGTTGTGGCAGCGGGACCGA
* * ** *
10875842 CAGCACGCAG-GGGGGATCGGGCCGGA-CCCTGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAG
1 CAGCACGCAGAGGGGGACCGGGCC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAG
* * * *
10875905 CACCCGCACGCTCGTTTCGTGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG
65 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AG
* * *
10875970 -CCAGACCGAGGGTTGTGGCAGCGGGACCGG
129 ATCGGACCGAGGGTTGTGGCAGCGGGACCGA
* * ** * * *
10876000 CAGCACACAGAGGGGAACCGAACCGATCCCCGACTTGTGCATTCTGCCTCTCCGACCGGCTGAGA
1 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* *
10876065 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
10876124 ATACGGAGTT
Statistics
Matches: 602, Mismatches: 142, Indels: 27
0.78 0.18 0.04
Matches are distributed among these distances:
157 92 0.15
158 78 0.13
159 426 0.71
160 6 0.01
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.23
Consensus pattern (159 bp):
CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGAT
CGGACCGAGGGTTGTGGCAGCGGGACCGA
Found at i:10875991 original size:316 final size:317
Alignment explanation
Indices: 10875273--10876122 Score: 1114
Period size: 316 Copynumber: 2.7 Consensus size: 317
10875263 TGGCTGAGTG
*
10875273 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGTAGTTCATTCCATGTCTAAGCCCCAGCC
1 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * *
10875338 AGACCGAGGGTTGTGGCAACGGGACCGACAGCACGCAGAGGGGGATCGGGCCGTTCCTCGACTTG
66 AGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGA-GGGGATCGAGCCGATCCTCGACTTG
* * *
10875403 TGCATTATGCCTTTCCGATTGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
130 TGCATTATGCCTCTCCGACTGGCTCAGAGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * *
10875468 GGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTACGACGGCAGGATCGATAGCACGT
195 GGAGTTCATTCCAAGTCTAAGATCAGATCGGACCGAGGGTTACGACAGCAGGATCGACAGCACGT
* *
10875533 AAGGGGGGACCGGGCTGAGCCACGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCA
260 AAGGGGGGACCGGGCGGAGCCACGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCA
* ** * * * **
10875591 CCTGTGCGCCCATTTCATGGGTTGGCATAGGCTTAGGGAGTTCATTCCATGTCTAAGCCCCAATC
1 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * * * *
10875656 GGACCGACGGTTGTGGCAGCGGGACTGGTAGCACGCAGAGGGCGATCGAGTCGATCCTCGGCTTG
66 AGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGG-GATCGAGCCGATCCTCGACTTG
* * * * * *
10875721 CGCATTATGCCTCTCCGGCTGGCTCAGTGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCGTAC
130 TGCATTATGCCTCTCCGACTGGCTCAGAGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* ** ** * * *
10875786 GAAGTTCATTCCCGGTCTAAGATCAGATCGGA-CGAGGGTTGTGGCAGTAGGATTGACAGCACG-
195 GGAGTTCATTCCAAGTCTAAGATCAGATCGGACCGAGGGTTACGACAGCAGGATCGACAGCACGT
* *
10875849 CAGGGGGGATCGGGCCGGA-CC-CTGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCA
260 AAGGGGGGACCGGG-CGGAGCCAC-GGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCA
* * * *
10875907 CCCGCACGCTCGTTTCGTGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCC
1 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * *
10875972 AGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACACAGAGGGGAACCGAACCGATCCCCGACTTG
66 AGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGG-ATCGAGCCGATCCTCGACTTG
* * * * *
10876037 TGCATTCTGCCTCTCCGACCGGCTGAGAGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAC
130 TGCATTATGCCTCTCCGACTGGCTCAGAGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
10876102 GGAGTTCATTCCATGTCTAAG
195 GGAGTTCATTCCAAGTCTAAG
10876123 CATACGGAGT
Statistics
Matches: 451, Mismatches: 77, Indels: 10
0.84 0.14 0.02
Matches are distributed among these distances:
315 2 0.00
316 226 0.50
317 30 0.07
318 193 0.43
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.23
Consensus pattern (317 bp):
CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
AGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGATCGAGCCGATCCTCGACTTGT
GCATTATGCCTCTCCGACTGGCTCAGAGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTCCAAGTCTAAGATCAGATCGGACCGAGGGTTACGACAGCAGGATCGACAGCACGTA
AGGGGGGACCGGGCGGAGCCACGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCA
Found at i:10876132 original size:26 final size:26
Alignment explanation
Indices: 10876096--10876148 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10876086 GTTGGCTTAG
10876096 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
10876122 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10876148 G
1 G
10876149 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10877105 original size:159 final size:160
Alignment explanation
Indices: 10876866--10877305 Score: 477
Period size: 159 Copynumber: 2.8 Consensus size: 160
10876856 CATTATTGGT
*
10876866 AGCACGCA-AGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCC-GACTGAGC
1 AGCACGCAGAGGGGGAC-GGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGGCTGAGC
* * * *
10876929 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCT-AG
65 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACTGAA
* *
10876993 CC-GAACCGAGGGTTGTGGCAGCGGGACCAAC
130 CCAG-ACCGAGGGTTGCGGCAGCAGGACCAAC
* * * * * * *
10877024 AGCACCCAGAGGGGGATCGGGTCGATCCTCGGCTTGTGCATTATGCCTCTCCGACCAGGCTCAGT
1 AGCACGCAGAGGGGGA-CGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGGCTGAGC
* * * *
10877089 GCCCGCACGCTC-TTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCC-TAGTCTAAG-ATTGA
65 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCAT-GTCTAAGCACTGA
* * *
10877151 ACCAGATCGAGGGTTGCGGTAGCAGGATCAAC
129 ACCAGACCGAGGGTTGCGGCAGCAGGACCAAC
* * * * ** * *
10877183 AGCACGTAG-GGGGGACCGAGTCGATCCCCGGCTTGCACATTCTACCTCTTTGGCTA-GTTGAGC
1 AGCACGCAGAGGGGGA-CGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGGCTGAGC
* *
10877246 GCCCGCACGCTCATTTCATGGGTAGGCTTAGGCATACA-GAGTTCATTCCATGTCTAAGCA
65 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA-AGGAGTTCATTCCATGTCTAAGCA
10877306 TACGGAGTTC
Statistics
Matches: 231, Mismatches: 41, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
157 16 0.07
158 82 0.35
159 115 0.50
160 18 0.08
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (160 bp):
AGCACGCAGAGGGGGACGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGGCTGAGCG
CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACTGAAC
CAGACCGAGGGTTGCGGCAGCAGGACCAAC
Found at i:10877307 original size:26 final size:26
Alignment explanation
Indices: 10877277--10877329 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10877267 GTAGGCTTAG
10877277 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
10877303 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10877329 G
1 G
10877330 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10878214 original size:26 final size:26
Alignment explanation
Indices: 10878184--10878236 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10878174 GTTGACTTAG
*
10878184 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
10878210 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
10878236 G
1 G
10878237 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:10878555 original size:26 final size:26
Alignment explanation
Indices: 10878525--10878577 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10878515 GTTGGCTTAG
10878525 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
10878551 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10878577 G
1 G
10878578 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10879286 original size:26 final size:26
Alignment explanation
Indices: 10879256--10879306 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
10879246 TTGGCTTAGG
10879256 CATACGGAGTTCATT-CCATGTCTAAC
1 CATACGGAGTTCATTCCCA-GTCTAAC
10879282 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
10879307 GATCAGATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:10879467 original size:560 final size:553
Alignment explanation
Indices: 10878808--10879861 Score: 1340
Period size: 560 Copynumber: 1.9 Consensus size: 553
10878798 GCACGTAGAA
* * *
10878808 GGGGATCGAGCTGATCCCCGGATTACGCATTATGCCTTTCCGGTTGGCCTCTCCGACCGGCTGAG
1 GGGGATCGAGCTGATCCCCGGATTACGCATTATGCCCTTCCGGTCGGCCTCTCCGACCGACTGAG
* * * * *
10878873 CGCCCGCACGCTCGTTTCTTGGGTTGACTTAGGCATATGGAGTTCTTCCCCAATCTAAGCAGATG
66 CACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCAGACG
10878938 GAGTTCATTCCCAGTCTAAGATC-AGACCGGACCAAGGGTTGC-GACAGTAGGATCGACAGCACG
131 GAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCAAGGGTTGCAG-CAGTAGGATCGACAGCACG
* *
10879001 CAGGGGGGACCAGACCGATCCCCGGCTTGCGCGTTCTAG-CTCTCCGATCGGCTGAGCACCCAAG
194 CAGGGGGGACCAGACCGATCCCCGACTTGCGCATTCT-GCCTCTCCGATCGGCT--G------AG
*
10879065 CGCCCG-AATG-CTCATT-TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAG-A
250 CGCCCGTAA-GCCTC-TTCT-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCTA-TCTAAGCC
* * * * * ** *
10879125 TCGGACCGGACCAAGGGTTGTGGCAGTAGAATCGATAGCACGCAG-GGGGGACCCG-GTTGGTCC
311 CCAG-CCGGACCAAGGGTTGTGGCAGCAGAACCGACAGCACGCAGAGGGGGA-CCGACCTGATCC
* * * * *
10879188 TCGGCTTGCGCATTCTACCCCTCTGACCGGCTAAGTGC-CTGCACGCTTGTTTCATGGGTTGGCT
374 CCGGCTTGCACATTCTACCCCTCCGACCGGCTAAGCGCTC-GCACGCTCGTTTCATGGGTTGGCT
*
10879252 TAGGCATACGGAGTTCATTCCATGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCAGATCA
438 TAGGCATACGGAGTTCATTCCATGTCTAACCATACAGAGTTCATTCCCAGTCTAAGATCAGATCA
10879317 GACCGAGGGTTACGATAGCAAGACCAGCAGCAGGATTGGTAGCACGCGGGG
503 GACCGAGGGTTACGATAGCAAGACCAGCAGCAGGATTGGTAGCACGCGGGG
* * * * *
10879368 GGGGATCGAGCTGATCCTCGGCTTGCGCATTCTGCCACTT-CGGTCGGCCTTTCCGACCGACTGA
1 GGGGATCGAGCTGATCCCCGGATTACGCATTATGCC-CTTCCGGTCGGCCTCTCCGACCGACTGA
* * * *
10879432 GCATCCGCACGCTCGTTTCATGGGTTGATTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
65 GCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCAGAC
** * * *
10879497 GGAGTTCATTCCCAGTCTAAGATCGAATTGGATCGAGGGTTGCAGCAGTAGGATCGACAGCACGT
130 GGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTTGCAGCAGTAGGATCGACAGCACGC
* * **
10879562 AGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGTAAG
195 AGGGGGGACCAGACCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGTAAG
* * * *
10879627 CCTCTTCTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCCTATCTAAGCCCCAGTCGGACCGAG
260 CCTCTTCTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTATCTAAGCCCCAGCCGGACCAAG
* * * *
10879692 GGTTGTGGTAGCGGGACCGGCAGCACGCAGAGGGGGACCGACCTGATCCCCGGCTTGCACATTCT
325 GGTTGTGGCAGCAGAACCGACAGCACGCAGAGGGGGACCGACCTGATCCCCGGCTTGCACATTCT
* * * * *
10879757 ACCTCTCCGACTGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTA
390 ACCCCTCCGACCGGCTAAGCGCTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
*
10879822 TTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
455 TTCCATGTCTAACCATACAGAGTTCATTCCCAGTCTAAGA
10879862 GTTTGAGCAA
Statistics
Matches: 425, Mismatches: 57, Indels: 31
0.83 0.11 0.06
Matches are distributed among these distances:
552 82 0.19
553 127 0.30
554 1 0.00
558 1 0.00
559 1 0.00
560 209 0.49
561 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (553 bp):
GGGGATCGAGCTGATCCCCGGATTACGCATTATGCCCTTCCGGTCGGCCTCTCCGACCGACTGAG
CACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCAGACG
GAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTTGCAGCAGTAGGATCGACAGCACGCA
GGGGGGACCAGACCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGTAAGC
CTCTTCTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTATCTAAGCCCCAGCCGGACCAAGG
GTTGTGGCAGCAGAACCGACAGCACGCAGAGGGGGACCGACCTGATCCCCGGCTTGCACATTCTA
CCCCTCCGACCGGCTAAGCGCTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAACCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGATAG
CAAGACCAGCAGCAGGATTGGTAGCACGCGGGG
Found at i:10879495 original size:26 final size:26
Alignment explanation
Indices: 10879465--10879517 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10879455 GTTGATTTAG
10879465 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
10879491 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
10879517 G
1 G
10879518 ATCGAATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10879837 original size:26 final size:26
Alignment explanation
Indices: 10879808--10879860 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10879798 GTTGGCTTAG
* *
10879808 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
10879834 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10879860 G
1 G
10879861 AGTTTGAGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10880859 original size:159 final size:157
Alignment explanation
Indices: 10880593--10881201 Score: 496
Period size: 159 Copynumber: 3.9 Consensus size: 157
10880583 GATCAGACCG
* *
10880593 GACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCG
1 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA-GGGGGATCGGGCCGATCCCCGGCTTGCG
* * * * * * * *
10880658 TATTTTGCCTCTTCGA-TTGGTTGAGCGCCCGCACACCCGTTTCGTGGATTGGCTTAGGCATACG
65 CATTTTGCCT-TTCCAGCTGGCTAAGCGCCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATACG
*
10880722 AAGTTCATTCCACATCTAAGCCCCAGCCG
129 AAGTTCATTCCACATCTAAGCCCCAGCCA
* * * *
10880751 GACCGAGGGTTGTGGCAAC-GAGATCGGCAGCACGCAGAGAGGGATCGGGCTGATCCCCGACTTG
1 GACCGAGGGTTGCGGCAGCAG-GATCGGCAGCACGCAG-G-GGGATCGGGCCGATCCCCGGCTTG
* * * * ** * *
10880815 CACATTATGCCTTTCTAGCTGGCTCAGCGCCCGCACGTTTGTTTCGTGGGTTGACTAAGGCATAC
63 CGCATTTTGCCTTTCCAGCTGGCTAAGCGCCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAC
* ** *
10880880 GTAGTTCATTCC-CAGTC-AAG-ATCAGACA
128 GAAGTTCATTCCACA-TCTAAGCCCCAGCCA
* * * * * * *
10880908 GACTGAGGGTTGCGGTAGCAGGATCGACAGGACGCAGGGGGACCGGGCCGGTCCCCGGCTTACGC
1 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGATCGGGCCGATCCCCGGCTTGCGC
* * * *
10880973 ATTTTACCTTTCCGGCCGGCTAAGCGCCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAC-AC
66 ATTTTGCCTTTCCAGCTGGCTAAGCGCCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATACGA-
** *
10881037 AGTTCATTCCATGTCTAAGCCCCAACCA
130 AGTTCATTCCACATCTAAGCCCCAGCCA
* * * * * ** * * * *
10881065 GATCGAAGGTTGTGGCTGCAGGACCGATAGCATGTAGAGGGGGATGGGGTCGATCCCCGGCTTGC
1 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACG--CAGGGGGATCGGGCCGATCCCCGGCTTGC
* * * * * * * * * * *
10881130 GCATTCTGCCTCTCCGGC-GACTGAGTGCCTGCACG-TTCGTTTCGTGCGTTGACTTAGGCATAT
64 GCATTTTGCCTTTCCAGCTGGCTAAGCGCCCGCACGCCT-GTTTCGTGGGTTGGCTTAGGCATAC
*
10881193 GGAGTTCAT
128 GAAGTTCAT
10881202 CCGCGGTCTA
Statistics
Matches: 353, Mismatches: 84, Indels: 28
0.76 0.18 0.06
Matches are distributed among these distances:
155 84 0.24
156 4 0.01
157 64 0.18
158 82 0.23
159 119 0.34
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGATCGGGCCGATCCCCGGCTTGCGC
ATTTTGCCTTTCCAGCTGGCTAAGCGCCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATACGAA
GTTCATTCCACATCTAAGCCCCAGCCA
Found at i:10881236 original size:26 final size:26
Alignment explanation
Indices: 10881187--10881237 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
10881177 GTTGACTTAG
*
10881187 GCATATGGAGTTCATCCGCGGTCTAA
1 GCATATGGAGTTCATCCGCAGTCTAA
10881213 GCATATGGAGTTCATTCC-CAGTCTA
1 GCATATGGAGTTCA-TCCGCAGTCTA
10881238 GGATCGGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.29
Consensus pattern (26 bp):
GCATATGGAGTTCATCCGCAGTCTAA
Found at i:10882944 original size:159 final size:160
Alignment explanation
Indices: 10882718--10883147 Score: 490
Period size: 159 Copynumber: 2.7 Consensus size: 160
10882708 GCACGTAGGA
* * ** * * *
10882718 GGGATCGGGCCGATCCCCGACTTGCGTATTCTGCCTCTCCGATCGGCTGAGCCCCCGCACACCCG
1 GGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCG
* * ** * * * *
10882783 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-G-TCGGAGCGAGGG
66 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CAAAGGACCAGACCAAGGG
* *
10882846 TTGTGGCAGCGGGACAGACAACACGCAGAGG
130 TTGTGACAGCAGGACAGACAACACGCAGAGG
* * * * **
10882877 GGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGTGCCCGCACGCTCG
1 GGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCG
*
10882942 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-AAAGGACCAGACCAAGGG
66 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCAAAGGACCAGACCAAGGG
**
10883005 TTGTGACAGCAGGATTGACAACACGCAGAGG
130 TTGTGACAGCAGGACAGACAACACGCAGAGG
* * * * ** * *
10883036 AGGACCGGACCGATCCCTGACTTGAGCATTCTGCCTCTCCGGCTAGTTGAGCAACCGCACGCTCG
1 GGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCG
* *
10883101 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGCCTAAGCA
66 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
10883148 TACGGAGTTC
Statistics
Matches: 224, Mismatches: 42, Indels: 9
0.81 0.15 0.03
Matches are distributed among these distances:
157 1 0.00
158 4 0.02
159 215 0.96
160 4 0.02
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (160 bp):
GGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCG
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAAAGGACCAGACCAAGGGT
TGTGACAGCAGGACAGACAACACGCAGAGG
Found at i:10884343 original size:159 final size:157
Alignment explanation
Indices: 10883983--10884465 Score: 405
Period size: 158 Copynumber: 3.1 Consensus size: 157
10883973 CGCAGTCTAA
* * * *
10883983 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGATCGACA
* * * * * *
10884048 GCACCTAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCACC
66 ACACCTAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTCAGCACC
*
10884113 CGCACGCCATTTCGTGGGTTGGCTTAG
131 CGCACGCCATTTCGTGGGTTGACTTAG
* ** * * * * *
10884140 GCATAGGGAGTTCATT-CCAAGTCTAAGCCCCAG-TCAGA-TCGAGGGTTGTGGCAGCGGGATCG
1 GCATACGGAGTTCATTCCCAA-TCTAAG-ATCAGACCGGACT-GAGGGTTGCGACAGCAGGATCG
* * *
10884202 GCAACACGC-AGAGGGGGACCGAGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGGTCGGCTCA
63 ACAACAC-CTAG-GGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTCA
* *** *
10884266 GTGA-CTTTACGCTCGTTTCGTGGGTTGACTTAG
126 G-CACCCGCACGC-CATTTCGTGGGTTGACTTAG
* ** * *
10884299 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTACGGTAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGATCGACA
* * * * * * * * * *
10884364 GCACGTAGGGGGGACC-AG--G---CTCGA-TAGCACATTCTACCTCTCCGGCCGACTGAGCACC
66 ACACCTAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTCAGCACC
* * *
10884422 CGCACGCTCGTTTCATGGGTTGGCTTAG
131 CGCACGC-CATTTCGTGGGTTGACTTAG
10884450 GCATACGGAGTTCATT
1 GCATACGGAGTTCATT
10884466 TCGTGTCTAA
Statistics
Matches: 257, Mismatches: 57, Indels: 30
0.75 0.17 0.09
Matches are distributed among these distances:
150 1 0.00
151 62 0.24
152 3 0.01
155 1 0.00
156 2 0.01
157 51 0.20
158 66 0.26
159 66 0.26
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGATCGACA
ACACCTAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTCAGCACC
CGCACGCCATTTCGTGGGTTGACTTAG
Found at i:10884500 original size:26 final size:26
Alignment explanation
Indices: 10884450--10884502 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10884440 GTTGGCTTAG
* ***
10884450 GCATACGGAGTTCATTTCGTGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
10884476 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
10884502 G
1 G
10884503 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:10885219 original size:26 final size:26
Alignment explanation
Indices: 10885189--10885241 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10885179 GTTGACTTAG
*
10885189 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
10885215 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10885241 G
1 G
10885242 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10885412 original size:26 final size:26
Alignment explanation
Indices: 10885372--10885424 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10885362 GTTGACTTAT
*
10885372 GCATACGGAGTTCATCCCCAGGCTAA
1 GCATACGGAGCTCATCCCCAGGCTAA
* *
10885398 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGGCTAA
10885424 G
1 G
10885425 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCCAGGCTAA
Found at i:10885468 original size:183 final size:184
Alignment explanation
Indices: 10885158--10885570 Score: 508
Period size: 183 Copynumber: 2.2 Consensus size: 184
10885148 TCGACTGAGA
* * * *
10885158 ACCCGCACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCTAGTCTAAGCATACGG
1 ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGGCTAAGCATACGG
* * * * * * *
10885223 AGTTTATTCCCAGTCTAAGATCGGACCGGACTGAGAGTTACGACAGCAGGATCGATAGCACGCA-
66 AGCTCATTCCCAGTCTAAGATCAGACCAGACCGAGAGTTAAGACAGCAGGATCGACAGCACGCAG
* * * * ** *
10885287 AAGGGAATGGGCC-AGTCCCTGGCTTACGCATTATGCCTCTTCGGCCAGCTCAGTG
131 AAGGGAACGGGCCGA-TCCCCGACTTACGCATTATGCCTCTCCAACCAGCTCAG-C
* *
10885342 A-CCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATCCCCAGGCTAAGCATACGG
1 ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGGCTAAGCATACGG
* * * *
10885406 AGCTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAAGGCAGCAGGATTGGCAGCACGCAG
66 AGCTCATTCCCAGTCTAAGATCAGACCAGACCGAGAGTTAAGACAGCAGGATCGACAGCACGCAG
* * * *
10885471 GAGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCAACCAGCTGAGC
131 AAGGGAACGGGCCGATCCCCGACTTACGCATTATGCCTCTCCAACCAGCTCAGC
* * *
10885525 ACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
1 ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
10885571 TCCATTTCTA
Statistics
Matches: 193, Mismatches: 33, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
183 111 0.58
184 81 0.42
185 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (184 bp):
ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGGCTAAGCATACGG
AGCTCATTCCCAGTCTAAGATCAGACCAGACCGAGAGTTAAGACAGCAGGATCGACAGCACGCAG
AAGGGAACGGGCCGATCCCCGACTTACGCATTATGCCTCTCCAACCAGCTCAGC
Found at i:10885755 original size:159 final size:158
Alignment explanation
Indices: 10885398--10885933 Score: 388
Period size: 159 Copynumber: 3.4 Consensus size: 158
10885388 CCCAGGCTAA
* *
10885398 GCATACGGAGCTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAAGGCAGCAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAAGGCAGCAGGACTGGCA
** * * *
10885463 GCACGCAGGAGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCAACCAGCTGAGCACC
66 GCACGCAGGAGGGACCGAACCGATCCCCGACTTACGCATTATGCCTCTCCAACCAGCTCAACACC
* *
10885528 CGCACGCCCGTTTCATGGGTTGGCTTAG
131 CGCACGCCCATTTCATGGGTTGACTTAG
* * ** * ** *
10885556 GCATAGGGAGTTCATT-CCATTTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGCGGGACTGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTAAGGCAGCAGGACTGG
* * * * *** **
10885619 CAGCACGCACAGG-GGGACCGAACGGATCCCTGGCTTGCGCATTATGCCTCTTTGACTGGCTCAA
64 CAGCACG--CAGGAGGGACCGAACCGATCCCCGACTTACGCATTATGCCTCTCCAACCAGCTCAA
** * * *
10885683 TGCCCGCACGCTCATTTCGTGGGTTGACTTAT
127 CACCCGCACGCCCATTTCATGGGTTGACTTAG
* * * * *
10885715 GCATACGAAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTACA-GCAACAGGA-TCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTA-AGGCAGCAGGACT-GG
*** * * * * * ** * * *
10885778 CAGTGCACTG-AGG-GGGACCGGGTCGGTCCTCGACTTGCGCATTCTACCTCTCCGGCCGGTTGA
64 CA--GCAC-GCAGGAGGGACCGAACCGATCCCCGACTTACGCATTATGCCTCTCCAACCAGCTCA
* * * * *
10885841 GCGA-CCGCATG-CTAGTTTCATGGATTGGCTTAG
126 AC-ACCCGCACGCCCA-TTTCATGGGTTGACTTAG
* * * *
10885874 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGTAGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAAGGCAGCAGGAC
10885934 CAGCACAGGA
Statistics
Matches: 285, Mismatches: 78, Indels: 28
0.73 0.20 0.07
Matches are distributed among these distances:
157 3 0.01
158 56 0.20
159 214 0.75
160 7 0.02
161 4 0.01
162 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAAGGCAGCAGGACTGGCA
GCACGCAGGAGGGACCGAACCGATCCCCGACTTACGCATTATGCCTCTCCAACCAGCTCAACACC
CGCACGCCCATTTCATGGGTTGACTTAG
Found at i:10886272 original size:171 final size:169
Alignment explanation
Indices: 10885869--10886272 Score: 395
Period size: 171 Copynumber: 2.4 Consensus size: 169
10885859 CATGGATTGG
* * * *
10885869 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGTAGGAC
1 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGAC
* *
10885934 CAGCACAGGATCGACAGCACGCAAGGGGGACCGAGCCAATCAGTGGCTTGCGCATTCTGCCTCTT
66 CAGCACAGGATCGACAGCACGCAAGGGGGACCGAGCCAATCAGTAGCTTGCGCATTATGCCTCTT
* * *
10885999 CGACTGGTTGAGCACTCGCACGCTCATTTCGTGGGTTGG
131 CGACTGGTTCAGCACCCGCACGCTCATTTCGTGGGTTGA
* ** ** * *
10886038 CTTAGGCAAACGGAGTTCATTCC-ATGTCTAAGCCCCAG-TTGGACCGAGGGTTGTGGTAGCAGG
1 CTTAGGCATACGGAGTTCATTCCTA-GTCTAAG-ATCAGATCAGACCGAGGGTTGCGGCAGCAGG
** * * ** * * * * * * *
10886101 ACTGGCAACGGGATTGGTAGCACGTAGAGGGGGATCGGGTCGATC-TTCAGCTTGCGTATTATGC
64 ACCAGC-ACAGGATCGACAGCACGCA-AGGGGGACCGAGCCAATCAGT-AGCTTGCGCATTATGC
** * *
10886165 CTC-TCTGA-TCGGTTCAGTGCCCGCACGCTCGTTTTGTGGGTTGA
126 CTCTTC-GACT-GGTTCAGCACCCGCACGCTCATTTCGTGGGTTGA
* *
10886209 CTTATGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAGGA
1 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGA
10886273 TCGATAGCTT
Statistics
Matches: 184, Mismatches: 42, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
168 1 0.01
169 50 0.27
170 24 0.13
171 108 0.59
172 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (169 bp):
CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGAC
CAGCACAGGATCGACAGCACGCAAGGGGGACCGAGCCAATCAGTAGCTTGCGCATTATGCCTCTT
CGACTGGTTCAGCACCCGCACGCTCATTTCGTGGGTTGA
Found at i:10886387 original size:499 final size:508
Alignment explanation
Indices: 10885917--10886923 Score: 1067
Period size: 525 Copynumber: 1.9 Consensus size: 508
10885907 CCAGACCAAG
* **
10885917 GGTTACGGCAGTAGGACCAGCA-CAGGATCGACAGCACGCA-AGGGGGACCGAGCCAATCAGTGG
1 GGTTACGGCAGTAGGACCAGCAGCAGGATCGACAGCACACAGA-GGGGACCGAGCCAATCACCGG
* * * * *
10885980 CTTGCGCATTCTGCCTCTTCGACTGGTTGAGCACTCGCACGCTCATTTCGTGGGTTGGCTTAGGC
65 CTTGCACATTCTACCTCTTCGACCGGTTGAGCACCCG-ACGCTCATTTCATGGGTTGGCTTAGGC
* ** * **
10886045 AAACGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCGAGGGTTGTGGTAGCAGGACTGGCAAC
129 AAACAGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGACAGCAGGACTGGCAAC
* ** * ** *
10886110 GGGATTGGTAGCACGTAGAGGGGGATCGG-GTCGATCTTCAGCTTGCGTATTATGCCTCTCTGA-
194 GGGATCGGTAGCACGTAGAGGGGGGCCGGACT-GATCCCCAGCTTGCGCATTATGCCTCTCTGAC
* * *
10886173 TCGGTTCAGTGCCCGCACGCTCGTTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCTAGTCT
258 T-GGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCT
* * *
10886238 AAGATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGATAGCTTGTAGAGGGGGATCGGGTCGA
322 AAGATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGACAGC-TGCAGAGGGGGACCGGGTCGA
* *
10886303 TCCTCGACTTGCGCATTCTACCTTTCCGGTCGGTTGAGCACCTGCACGCTCGTTTCATGGGTTGG
386 TCCTCGACTTGCGCATTCTACCTCTCCGGCCGGTTGAGCACC-GCACGCTCGTTTCATGGGTTGG
*
10886368 CTTAGGCATATGGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGAT
450 CTTAGGCATACGGAGTTCATTCCACGTCTAAGCATAC-GAG-T-A---CC-A-C-AAGATC-G--
10886433 CGGATCGAA
503 C-GA-C-AA
* ** *
10886442 GGTTACGGTAGTAGGACCAGCAGCAGGATCGACAGCACACAGAGGGGACCGAGCCGGTCCCCGGC
1 GGTTACGGCAGTAGGACCAGCAGCAGGATCGACAGCACACAGAGGGGACCGAGCCAATCACCGGC
* ** *
10886507 TTGCACATTCTACCTTTTCGACCGGTTGAGTGCCCGACGCTCATTTCATGGGTTGGCTTAGGCAT
66 TTGCACATTCTACCTCTTCGACCGGTTGAGCACCCGACGCTCATTTCATGGGTTGGCTTAGGCAA
*** * * **
10886572 ACAGAGTTCATTCCATGTCTAAGTTGCAGCCGAACCGAGGGTTGTTACAGCAGGACTGGTAGTGG
131 ACAGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGACAGCAGGACTGGCAACGG
* ** * *
10886637 GATCGGTAGCACGTAGAGGGGGGCCGGACTGATCCCCGGCTTGTACATTATGCCTCTCCGGCTGG
196 GATCGGTAGCACGTAGAGGGGGGCCGGACTGATCCCCAGCTTGCGCATTATGCCTCTCTGACTGG
* ** * * * *
10886702 CTGAGCACTCGTACGCTCGTTTCATGGGTTGACTT-TGGCATACAGAGTTCATTCCCAGTCTAAG
261 CTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAT-GCATACGGAGTTCATTCCCAGTCTAAG
* ** * *
10886766 ATCAGATCAGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAG-GGGGGACCGGGTTGATCC
325 ATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGACAGC-TGCAGAGGGGGACCGGGTCGATCC
** * * * ** * *
10886830 -CTGACTTATGCATTTTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCGTTT-AGTGGGTTGGC
389 TC-GACTTGCGCATTCTACCTCTCCGGCCGGTTGAGC-ACCGCACGCTCGTTTCA-TGGGTTGGC
* *
10886893 TTAGGCATAGGGAGTTCATTCCATGTCTAAG
451 TTAGGCATACGGAGTTCATTCCACGTCTAAG
10886924 TCCTAGCCAG
Statistics
Matches: 401, Mismatches: 73, Indels: 17
0.82 0.15 0.03
Matches are distributed among these distances:
523 2 0.00
524 91 0.23
525 242 0.60
526 65 0.16
527 1 0.00
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (508 bp):
GGTTACGGCAGTAGGACCAGCAGCAGGATCGACAGCACACAGAGGGGACCGAGCCAATCACCGGC
TTGCACATTCTACCTCTTCGACCGGTTGAGCACCCGACGCTCATTTCATGGGTTGGCTTAGGCAA
ACAGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGACAGCAGGACTGGCAACGG
GATCGGTAGCACGTAGAGGGGGGCCGGACTGATCCCCAGCTTGCGCATTATGCCTCTCTGACTGG
CTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGA
TCAGATCAGACCGAGGGTTGCGACAGCAGGATCGACAGCTGCAGAGGGGGACCGGGTCGATCCTC
GACTTGCGCATTCTACCTCTCCGGCCGGTTGAGCACCGCACGCTCGTTTCATGGGTTGGCTTAGG
CATACGGAGTTCATTCCACGTCTAAGCATACGAGTACCACAAGATCGCGACAA
Found at i:10886423 original size:26 final size:26
Alignment explanation
Indices: 10886373--10886425 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10886363 GTTGGCTTAG
* *
10886373 GCATATGGAGTTCATTCCACGTCTAA
1 GCATACGGAGTTCATTCCACATCTAA
10886399 GCATACGGAGTTCATTCC-CAATCTAA
1 GCATACGGAGTTCATTCCAC-ATCTAA
10886425 G
1 G
10886426 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCACATCTAA
Found at i:10887048 original size:159 final size:159
Alignment explanation
Indices: 10886714--10887242 Score: 585
Period size: 159 Copynumber: 3.3 Consensus size: 159
10886704 GAGCACTCGT
* * *
10886714 ACGCTCGTTTCATGGGTTGACTTTGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACT
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT
* *
10886779 GAGGGTTGCGGTAGCAGGATCGACAGCAC--GCAGGGGGGACCGGGTTGATCCCTGACTTATGCA
66 GAGGGTTGAGGTAGCAGGATCGACAGCACATGCAGGGGGGACCGGG-TGATCCCTGACTTACGCA
* * *
10886842 TTTTGCCTCTCCGACCGACTGAGCGCCCGC
130 TTATGCCTTTCCGATCGACTGAGCGCCCGC
* * *
10886872 ACGCCCGTTT-AGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG-TCCTAG-CCA
1 ACGCTCGTTTCA-TGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGAT-C-AGACCA
* * * * * *
10886933 GACTGAGGGTTGTGGCAGCGGGATCGACAGCACATGGA-GGGGGACCGGGCTGATCCCCGACTTG
62 GACTGAGGGTTGAGGTAGCAGGATCGACAGCACATGCAGGGGGGACCGGG-TGATCCCTGACTTA
* * * *
10886997 CGCATTATGCCTTTTCGATCGGCTCAGTGCCCGC
126 CGCATTATGCCTTTCCGATCGACTGAGCGCCCGC
* * * *
10887031 ATGCTCGTTTCATGGGTTGACTTATGCACACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-T
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT
*
10887095 CGAGGGTTGAGGTAGCAGGATCGAC--CACATGCAGGGGGGACTGGGTCGATCCCATGACTTACG
66 -GAGGGTTGAGGTAGCAGGATCGACAGCACATGCAGGGGGGACCGGGT-GATCCC-TGACTTACG
* * * *
10887158 CATTCTGCCTCTTCCGGTCGATTGAGCGCACGC
128 CATTATGCCT-TTCCGATCGACTGAGCGCCCGC
* * *
10887191 ACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
10887243 CATACGAAGT
Statistics
Matches: 306, Mismatches: 49, Indels: 30
0.79 0.13 0.08
Matches are distributed among these distances:
157 13 0.04
158 93 0.30
159 136 0.44
160 64 0.21
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT
GAGGGTTGAGGTAGCAGGATCGACAGCACATGCAGGGGGGACCGGGTGATCCCTGACTTACGCAT
TATGCCTTTCCGATCGACTGAGCGCCCGC
Found at i:10887253 original size:26 final size:26
Alignment explanation
Indices: 10887216--10887268 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10887206 GTTGGCTTAG
*
10887216 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
10887242 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
10887268 G
1 G
10887269 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:10889040 original size:26 final size:26
Alignment explanation
Indices: 10889010--10889063 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
10889000 GGGTTGACTT
10889010 AGGCATACGGAGTTCATCCCAGTCTA
1 AGGCATACGGAGTTCATCCCAGTCTA
*
10889036 AGGCATACGGAGTTCATTCCAGTCTA
1 AGGCATACGGAGTTCATCCCAGTCTA
10889062 AG
1 AG
10889064 ATCGGACTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (26 bp):
AGGCATACGGAGTTCATCCCAGTCTA
Found at i:10890433 original size:159 final size:158
Alignment explanation
Indices: 10890177--10890817 Score: 570
Period size: 159 Copynumber: 4.0 Consensus size: 158
10890167 TTGCAGCAGT
* * * *
10890177 AGGATCGACAGCACATAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCG
1 AGGATCGACAGAACACAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGATCG
** * * * * * *
10890242 GCTGAGGGCCTGTACGCCCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATT-CCATGTGTAA
66 GCTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTACCA-GTCTAA
* * *
10890306 GCCCCAG-CCAGACCGAAGGTTGTGGTAGC
130 G-CCCAGACCGGACCGAGGGTTGTGATAGC
* * * * *
10890335 GGGATCGACAGAACACAGAGGGGGACCGGGTCGATCCCCGGTTTGCACATTATGCCTCTCCGGTC
1 AGGATCGACAGAACACAG-GGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGATC
* * ** *
10890400 GGCTCAACGGCCGCACGCTCATTTCATACGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
65 GGCTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTACCAGTCTAA
** * ** *
10890465 GATCAGACCGGACTGAGGGTTACGACAGC
130 GCCCAGACCGGACCGAGGGTTGTGATAGC
* * * * * *** * *
10890494 AGGATCGACAGCACGCAGGGAGGGATCGGGTCGATCCCCGACTTATGCATTCTACCTCTCCGGTC
1 AGGATCGACAGAACACAGGG-GGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGATC
* * * * * *
10890559 GGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTACCAGTCTAA
65 GGCTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTACCAGTCTAA
* * *
10890624 GTCTAGACCGGATCGAGGGTTGTGATAGC
130 GCCCAGACCGGACCGAGGGTTGTGATAGC
* *
10890653 AGGACCAGTAACAAGATCGATAGCACACAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTCTG
1 AGG---A-T--C--GA-C---AGAACACAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTG
* * * * *
10890718 CCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
54 CCTCTCCGATCGGCTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
*
10890783 T-CCATGTCTAAGCCCCAG-CCGGGCCGAGGGTTGTG
119 TACCA-GTCTAAG-CCCAGACCGGACCGAGGGTTGTG
10890818 GCAGTAGGAC
Statistics
Matches: 386, Mismatches: 79, Indels: 24
0.79 0.16 0.05
Matches are distributed among these distances:
158 20 0.05
159 234 0.61
160 3 0.01
162 1 0.00
163 1 0.00
165 1 0.00
167 2 0.01
168 1 0.00
169 3 0.01
170 107 0.28
171 13 0.03
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
AGGATCGACAGAACACAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGATCG
GCTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTACCAGTCTAAG
CCCAGACCGGACCGAGGGTTGTGATAGC
Found at i:10890813 original size:170 final size:171
Alignment explanation
Indices: 10890496--10890817 Score: 427
Period size: 170 Copynumber: 1.9 Consensus size: 171
10890486 ACGACAGCAG
* * * ** ** *
10890496 GATCGACAGCACGCAGGGAGGGATCGGGTCGATCCCCGACTTATGCATTCTACCTCTCCGGTCGG
1 GATCGACAGCACACAGGGAGGGACCGGGCCGATCCCCGACTTACACATTCTACCTCTCCGACCGA
* * *
10890561 CTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTACCAGTCTAAGT
66 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTACCAGTCTAAGC
* *
10890626 CTAGACCGGATCGAGGGTTGTGATAGCAGGACCAGTAACAA
131 CCAGACCGGACCGAGGGTTGTGATAGCAGGACCAGTAACAA
* * *
10890667 GATCGATAGCACACAGGG-GGGACCGGGCCGATCCCC-AGCTTGCACATTCTGCCTCTCCGACCG
1 GATCGACAGCACACAGGGAGGGACCGGGCCGATCCCCGA-CTTACACATTCTACCTCTCCGACCG
*
10890730 ACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAA
65 ACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTACCA-GTCTAA
*
10890794 GCCCCAG-CCGGGCCGAGGGTTGTG
129 G-CCCAGACCGGACCGAGGGTTGTG
10890818 GCAGTAGGAC
Statistics
Matches: 130, Mismatches: 18, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
169 4 0.03
170 107 0.82
171 19 0.15
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.22
Consensus pattern (171 bp):
GATCGACAGCACACAGGGAGGGACCGGGCCGATCCCCGACTTACACATTCTACCTCTCCGACCGA
CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTACCAGTCTAAGC
CCAGACCGGACCGAGGGTTGTGATAGCAGGACCAGTAACAA
Found at i:10891358 original size:26 final size:26
Alignment explanation
Indices: 10891310--10891360 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
10891300 TGGCTTAGGC
* *
10891310 ATACGGAGTTCATTCCATTTCTAAGT
1 ATACAGAGTTCATTCCATGTCTAAGT
10891336 ATACAGAGTTCATTCCCA-GTCTAAG
1 ATACAGAGTTCATT-CCATGTCTAAG
10891361 AGTTTGAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (26 bp):
ATACAGAGTTCATTCCATGTCTAAGT
Found at i:10892558 original size:26 final size:26
Alignment explanation
Indices: 10892529--10892581 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10892519 GTTGGCTTAG
10892529 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
10892555 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10892581 G
1 G
10892582 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10894158 original size:26 final size:26
Alignment explanation
Indices: 10894108--10894160 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10894098 GTTGGCTTAG
**
10894108 GCATACAGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCTAATCTAA
*
10894134 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACAGAGTTCATTCCTAATCTAA
10894160 G
1 G
10894161 ATAGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAATCTAA
Found at i:10894432 original size:883 final size:863
Alignment explanation
Indices: 10892665--10894712 Score: 2138
Period size: 883 Copynumber: 2.3 Consensus size: 863
10892655 CCTCAGCTTG
* * * *
10892665 CGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACACTCATTTCATGGGTTGACTTAAGCATAC
1 CGCATTATGCCTCTCTGGCCGGCTGAGCGCCCACACGCTCATTTCATGGGTTGACTTAAGCATAC
* * * * *
10892730 -GAGGTTTATCCTCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGG
66 AGA-GTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGG
* * * * * * *
10892794 GTTGCGGTAGCAGGATCGACAGCACACAGGGTGGATCGGGCCGATCCCGGACTTGCTCATTCTAC
130 GTTACGGTAGCAGGATCGGCAGCACGCAGGGGGGATCGAGCCGATCCCGG-CTTGCACATTCTGC
* * * *
10892859 CTCT-TCGGTCGACTGAGTGCCCGCATGCCCGTTTTGTGGGTTGGTTTAGGCATAGGGAGTTCAT
194 CTCTCT-GGCCGACTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
* * * * ** * * * *
10892923 TCCATGTCTAAACCCCAGCCGGACCGAGGGTTGTGGCAATGGGTTTGGCAGCACGCAGAGGGGGA
258 TCCATGTCTAAGCCCCAGCAGGACTGAAGGTTGTGGCAACAGGATTGACAGCACACAGAGAGGGA
* * * * * * * * *
10892988 TCGGGTAGAGCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTCAGCTCCCACACTCTCGTTTT
323 CCGGGCAGAGCCCCGACTTACGCATTATGCCTCCCCGATCGGCTCAGCGCCCAAACTCTCATTTC
* **
10893053 GTGGGTTAACTTAAGCATACGGAGTTCAATCCCAATCTAAGATCAGACCGGACCGAGCATTGTGA
388 GTGGGTTAACTTAAGCATACGGAGTTCAATCCCAATCTAAGATCAGACCGCACCGAGCATTACGA
** * * * * * * *
10893118 CAGCAGGATTGACAGCATGCAGTGGGGATCGGGCCGGTCCCCAGCTTATGCATTCTACCTTTCCG
453 CAGCAGGATCAACAACACGCAGGGGGGATCGAGCCGATCCCCAGCATATGCATTCTACCTCTCCG
* ** * * *
10893183 GTCGGCTTTGTGCCTGCATGCTCGTTTCATGGGTTGGCTTAGGCATATCGAGTTCATTCCATGTC
518 GCCGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATATCGAGTTCATTCCATGTC
* * * *
10893248 TAAGCATACGGAGTTCATTCCCAGTCTAAAGATCAGACCGAATCGAGGGTTGCAACAGCAGGGCC
583 TAAGCATACGGAGTTCATTCCCAATCTAAAGATCAGACCGAATCAAGGGTTACAACAGCAGGACC
* * * * * *
10893313 AGTTGCAAGATCGACAGCACGCAAAGAGGGATAGGGCCGATCCCTGGCTTACGCATTCTACCTCT
648 AGTAGCAAGATCAACAGCACGCAAAGAGGGACAGAGCCGATCCCCGACTTACGCATTCTACCTCT
* *
10893378 CTGGTCGGCTGAGCACCCGCTCGCTCCTTTCTTCGGTTGGCTTAGGCATACGGAGTTCATTCCAC
713 CTGGTCGGCTGAGCACCCGCTCGCTCCTTCCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAC
* *
10893443 GTCTAAGCCCCAGTCGGACCGAAGGTTCTGGCAGTAGGACCGACAGCGGGATCGACAGCACGTAG
778 GTCTAAGCCCCAGCCGGACCAAAGGTTCTGG-AGT--GA-CGACA--GGGATCGACAGCACGTAG
10893508 AAAGGGACCGGGCTGATCCCCGACTTA
837 AAAGGGACCGGGCTGATCCCCGACTTA
*
10893535 CGCATTATGCCTCTCTGACCGGCCTCTCCGATCGACTGAGCGCCCACGCGCTCATTTCATGGGTT
1 CGCATTATGCCTCTCT----GG-----CCG---G-CTGAGCGCCCACACGCTCATTTCATGGGTT
* * *
10893600 GACTTAGGCAAACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAA
53 GACTTAAGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAA
* *
10893665 ACCAGACCGAGGGTT-CTCGTAGCAGGATCGGCAGCACGTAGGGGGGATCGAGCCGATCCTCGGC
118 ACCAGACCGAGGGTTAC-GGTAGCAGGATCGGCAGCACGCAGGGGGGATCGAGCCGATCC-CGGC
* * * * * *
10893729 TTGCGCATTTTGCCTCTCTGGCCGATTTAGCGCCCACACT-CCCGTTTCGTTGGTTGGCTTAGGC
181 TTGCACATTCTGCCTCTCTGGCCGACTGAGCGCCCGCA-TGCCCGTTTCGTGGGTTGGCTTAGGC
* * *
10893793 ATAAGGAGTTCATTCCATGTCTAAGCCCCAGCAGGATTGAAGGTTGTGGCAACAGGATTGATAGC
245 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACTGAAGGTTGTGGCAACAGGATTGACAGC
* *
10893858 ACACAGAGAGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCCCCGATCGGCTCAGCGCCC
310 ACACAGAGAGGGACCGGGCAGAGCCCCGACTTACGCATTATGCCTCCCCGATCGGCTCAGCGCCC
* * * * * *
10893923 AAACGT-TCATTTCGTGGGTTGAGTTAGGCATATC-GAGTTCATTCTCAGTCTAAGATCAGACCG
375 AAAC-TCTCATTTCGTGGGTTAACTTAAGCATA-CGGAGTTCAATCCCAATCTAAGATCAGACCG
** * * * * *
10893986 CACCGAGGGTTACGGCAGCAGGATCAACAACACGTAGGGGGGA-CTGAGCCGATCCTCGGCATGT
438 CACCGAGCATTACGACAGCAGGATCAACAACACGCAGGGGGGATC-GAGCCGATCCCCAGCATAT
* * *
10894050 GCATTCTGCCTCTCCGGCCTGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA-C
502 GCATTCTACCTCTCCGGCCGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATATC
* * * **
10894114 AGAGTTCATTCCTTGTCTAAGCATACGGAGTTCATTCCTAATCT-AAGAT-AGGATCGGTTCAAG
567 -GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAAGATCA-GACCGAATCAAG
** * * * * *
10894177 GGTTACGGCAGCAGGACCAGTAGCAGGATCAACAGCATGCAAGGGGGGACCGAGCCGATCCCCGA
630 GGTTACAACAGCAGGACCAGTAGCAAGATCAACAGCACGCAAAGAGGGACAGAGCCGATCCCCGA
* * * ** * ** *
10894242 CTTACGCATTTTGCCTCTCTGG-CTGGTTGAGTGCTCG-TACGCTTGTTCCGTGGGTTGGCTTAG
695 CTTACGCATTCTACCTCTCTGGTC-GGCTGAGCACCCGCT-CGCTCCTTCCGTCGGTTGGCTTAG
* * *
10894305 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTAAAGGTTGT-G-GT-A-G-CA-GGA
758 GCATACGGAGTTCATTCCACGTCTAAGCCCCAGCCGGACCAAAGGTTCTGGAGTGACGACAGGGA
** *** * * * *
10894364 TCGGTAGCACGTAGTGGGGGACCGGGTTGATCCTCGGCTTG
823 TCGACAGCACGTAGAAAGGGACCGGGCTGATCCCCGACTTA
** *
10894405 CGCATTATACCTCTCCGATCGGCCTCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTT
1 CGC-----A--T-T---AT--GCCTCTCTGGCCGGCTGAGCGCCCACACGCTCATTTCATGGGTT
* *
10894470 GACTTAAGCATACAGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
53 GACTTAAGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAA
* * * * * *
10894535 ACTAGACCGA-GGTTACGGCAGTAGGATCGGTAGGACGCAGGGGGGA-CTGAACCGATCCCCGGC
118 ACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGGGGGGATC-GAGCCGAT-CCCGGC
* * * ** *
10894598 TTGCACATTCTGCCTCTCCGACCGGCTGAGCATCCGCATGCCCTTTTCGTGGGTTGGCTTAGGCA
181 TTGCACATTCTGCCTCTCTGGCCGACTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCA
*
10894663 TAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACTGAAGGTTGTGGCA
246 TAGGGAGTTCATTCCATGTCTAAGCCCCAGCAGGACTGAAGGTTGTGGCA
10894713 GCGGGACCGG
Statistics
Matches: 969, Mismatches: 167, Indels: 85
0.79 0.14 0.07
Matches are distributed among these distances:
868 2 0.00
869 137 0.14
870 151 0.16
871 1 0.00
873 2 0.00
874 6 0.01
875 1 0.00
876 1 0.00
877 1 0.00
878 1 0.00
879 7 0.01
881 6 0.01
882 159 0.16
883 485 0.50
884 9 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (863 bp):
CGCATTATGCCTCTCTGGCCGGCTGAGCGCCCACACGCTCATTTCATGGGTTGACTTAAGCATAC
AGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGG
TTACGGTAGCAGGATCGGCAGCACGCAGGGGGGATCGAGCCGATCCCGGCTTGCACATTCTGCCT
CTCTGGCCGACTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC
ATGTCTAAGCCCCAGCAGGACTGAAGGTTGTGGCAACAGGATTGACAGCACACAGAGAGGGACCG
GGCAGAGCCCCGACTTACGCATTATGCCTCCCCGATCGGCTCAGCGCCCAAACTCTCATTTCGTG
GGTTAACTTAAGCATACGGAGTTCAATCCCAATCTAAGATCAGACCGCACCGAGCATTACGACAG
CAGGATCAACAACACGCAGGGGGGATCGAGCCGATCCCCAGCATATGCATTCTACCTCTCCGGCC
GGCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATATCGAGTTCATTCCATGTCTAA
GCATACGGAGTTCATTCCCAATCTAAAGATCAGACCGAATCAAGGGTTACAACAGCAGGACCAGT
AGCAAGATCAACAGCACGCAAAGAGGGACAGAGCCGATCCCCGACTTACGCATTCTACCTCTCTG
GTCGGCTGAGCACCCGCTCGCTCCTTCCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCACGTC
TAAGCCCCAGCCGGACCAAAGGTTCTGGAGTGACGACAGGGATCGACAGCACGTAGAAAGGGACC
GGGCTGATCCCCGACTTA
Found at i:10894504 original size:26 final size:26
Alignment explanation
Indices: 10894474--10894529 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
10894464 TGGGTTGACT
10894474 TAAGCATACAGAGTTCA-TCCCTAGTC
1 TAAGCATACAGAGTTCATTCCC-AGTC
*
10894500 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
10894526 TAAG
1 TAAG
10894530 ATCAGACTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 24 0.86
27 4 0.14
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:10894892 original size:26 final size:26
Alignment explanation
Indices: 10894856--10894907 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10894846 TTGGCTTAGC
10894856 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
*
10894882 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
10894908 ATTCTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:10895611 original size:26 final size:26
Alignment explanation
Indices: 10895574--10895626 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10895564 GTTGACTTAG
*
10895574 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
10895600 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
10895626 G
1 G
10895627 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:10895918 original size:159 final size:158
Alignment explanation
Indices: 10895600--10896103 Score: 408
Period size: 159 Copynumber: 3.2 Consensus size: 158
10895590 CCCAGTCTAA
** * * *
10895600 GCATAC-GAAGTTCATTCCCAGTCTAAG-ATTGGACTGGACCGAGGGTTACGGCAGCAGGATCGG
1 GCATACAG-AGTTCATTCCCAGTCTAAGCCCTAG-CCGGACCGAGGGTTACGGCAGCAGGACCGG
* * * *
10895663 CAGCATGCAGGTGGGATCAGGCCGATCCCCGGCTTACACATTTTGCCTCTCCGACCGGCTGAGCA
64 CAGCATGCAGGGGGGACCAGGCCGATCCCCGGCTTACACATTATGCCTCTCCGACCGGCTCAGCA
* * *
10895728 CCCGCACGCCCGTTTCGTGGGTTAGCTTAG
129 CCCACACGCCCGTTTCATGGGTTAACTTAG
** ** * *
10895758 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCGGGACCTGC
1 GCATACAGAGTTCATTCCCA-GTCTAAGCCCTAGCCGGACCGAGGGTTACGGCAGCAGGACCGGC
* ** *
10895822 AGCATGCAGAGGGGGACC-GAGCCGATCCCTGGCTTATGCATTATGCCTCTCCGACCGGCTCAGT
65 AGCATGCAG-GGGGGACCAG-GCCGATCCCCGGCTTACACATTATGCCTCTCCGACCGGCTCAGC
* * **
10895886 GCCCACATGCTTGTTTCATGGGTTAACTTAG
128 ACCCACACGCCCGTTTCATGGGTTAACTTAG
* ** * * * * * * *
10895917 GCATACATAGTTCATTCCCAGTCTAAGATC-AGTTCGAACCGAGGGTTACAGTAGTAGGATCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGCCCTAG-CCGGACCGAGGGTTACGGCAGCAGGACCGGC
* * * * * * * * * * *
10895981 AGCACGTC-GAGGGGGATCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTCTGGCTGGCTGAGC
65 AGCATG-CAG-GGGGGACCAGGCCGATCCCCGGCTTACACATTATGCCTCTCCGACCGGCTCAGC
* * **
10896045 ACCCGCACGCTCGTTTCATGGGTTGGCTTAG
128 ACCCACACGCCCGTTTCATGGGTTAACTTAG
* **
10896076 GCATACGGAGTTCATTCCTTGTCTAAGC
1 GCATACAGAGTTCATTCCCAGTCTAAGC
10896104 ATACAGAGTT
Statistics
Matches: 273, Mismatches: 64, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.01
158 57 0.21
159 208 0.76
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGCCCTAGCCGGACCGAGGGTTACGGCAGCAGGACCGGCA
GCATGCAGGGGGGACCAGGCCGATCCCCGGCTTACACATTATGCCTCTCCGACCGGCTCAGCACC
CACACGCCCGTTTCATGGGTTAACTTAG
Found at i:10896106 original size:26 final size:26
Alignment explanation
Indices: 10896076--10896128 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10896066 GTTGGCTTAG
* **
10896076 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10896102 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10896128 G
1 G
10896129 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10896473 original size:25 final size:26
Alignment explanation
Indices: 10896444--10896495 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
10896434 GTGGACTTAG
10896444 GCATACAGAGTTCA-TACCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
** *
10896469 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
10896495 G
1 G
10896496 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAGTCTAA
Found at i:10897944 original size:159 final size:156
Alignment explanation
Indices: 10897581--10898083 Score: 438
Period size: 159 Copynumber: 3.2 Consensus size: 156
10897571 CCCAGTCTAA
* * * **
10897581 GCATACATAGTTCATTCCCAATCTAAGATCAGACTGGACTGAGGGTTGTGGTAGTAGGATCGACA
1 GCATACAGAGTTCATT-CCAGTCTAAGATCAGAC-GGACTGAGGGTTGTGGCAACAGGATCGACA
* * * * * *
10897646 GCACGCAGGGGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
64 GCACGCAGAGGGGACCGGACCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTCAACGCC
* * *
10897711 CGTACGCCTGTTTTGTGGGTTGGCTTAG
129 CGCACGCCTGTTTCGTGGGTTGACTTAG
** ** * * *
10897739 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA-TCGAGGGTTGTGGCAACGGGA-CTGG
1 GCATACAGAGTTCATTCCA-GTCTAAG-ATCAGACGGACT-GAGGGTTGTGGCAACAGGATC-GA
* *
10897802 CAGCACGTAGAAGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTCAAC
62 CAGCACGCAG-AGGGGACCGGACCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTCAAC
*
10897867 GCCCGCACGCTTGTTTCGTGGGTTGACTTAG
126 GCCCGCACGCCTGTTTCGTGGGTTGACTTAG
* * ** * *
10897898 GCATACAGAGTTCATTACCAGTCTAAGATCGGATCGGACTGAGGGTTGCGATAGCAGGATCGATA
1 GCATACAGAGTTCATT-CCAGTCTAAGATCAGA-CGGACTGAGGGTTGTGGCAACAGGATCGACA
* * * * * * * * * * * * *
10897963 GCACACAGGGAGGGATCAGG-TCGATCCTCGACTCGTGCATTTTGCCTCTCTGGCCGGTTGAGCT
64 GCACGCAGAG-GGGA-CCGGACCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTCAACG
* * *
10898027 CCCGCACG-CTCATTTCATGGGTTGGCTTAG
127 CCCGCACGCCT-GTTTCGTGGGTTGACTTAG
*
10898057 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCA-GTCTAAG
10898084 CATACGAAAT
Statistics
Matches: 276, Mismatches: 56, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
157 5 0.02
158 54 0.20
159 209 0.76
160 8 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCAGTCTAAGATCAGACGGACTGAGGGTTGTGGCAACAGGATCGACAGC
ACGCAGAGGGGACCGGACCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTCAACGCCCG
CACGCCTGTTTCGTGGGTTGACTTAG
Found at i:10898087 original size:26 final size:26
Alignment explanation
Indices: 10898057--10898109 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10898047 GTTGGCTTAG
* *
10898057 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAATTCATTCCCA-GTCTAA
10898083 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
10898109 G
1 G
10898110 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:10898436 original size:514 final size:511
Alignment explanation
Indices: 10897636--10898824 Score: 1569
Period size: 514 Copynumber: 2.3 Consensus size: 511
10897626 TTGTGGTAGT
* *
10897636 AGGATCGACAGCACGCAGGGGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCG
1 AGGATCGGCAGCACGCA-GGGGGACCGG-CCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCG
* * * *
10897701 GCTGAGCGCCCGTACGCCTGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
64 GCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
* * *
10897766 CCCCAGCCGGATCGAGGGTTGTGGCAACGGGACTGGCAGCACGTAGAAGGGGACCGGGCCGATCC
129 CCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAAGGGGACCGGGCCGATCC
* *
10897831 CCGACTTGCGCATTATGCCTCTCCGGCCGGCTCAACGCCCGCACGCTTGTTTCGTGGGTTGACTT
194 CCGACTTGCGCATTATGCCTCTCCAGCCGGATCAACGCCCGCACGCTTGTTTCGTGGGTTGACTT
* **
10897896 AGGCATACAGAGTTCATTACCAGTCTAAGATCGGATCGGA-CTGAGGGTTGC-GATAGCAGGATC
259 AGGCATACAGAGTTCATTACCAGTCTAAGATCGGA-CCGACCCAAGGGTTGCAG-TAGCAGGATC
* * * *** * *
10897959 GATAGCACACAGGGAGGGATCAGGTCGATCCTCGACTCGT-GCATTTTGCCTCTCTGGCCGGTTG
322 GACAGCACACAGGG-GGGATCAGGTCGATCCCCGACT-GTCGCATTCTGCCTCTCCAACAGGCTG
* *
10898023 AGCTCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
385 AGCACCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
* *
10898088 CGAAATTCATTCCCAGTCTAAGATCA-GACCGGACCGAGGGTTGTGATAGCAGGACCAGCAGC
450 CGAAATTCATTCCCAGTCTAAGAT-AGGACCAGACCGAGGGTTGCGATAGCAGGACCAGCAGC
* * *
10898150 AGGATCGGCAACACACAGAGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCA
1 AGGATCGGCAGCACGCAG-GGGGACC-GGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCG
* *
10898215 GCTGAGCACCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAG
64 GCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
* * * *
10898280 CCCTAGCCGGACCGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGATGGGGACTGGGTCGATCC
129 CCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAAGGGGACCGGGCCGATCC
* * * * *
10898345 CTGGCTTGCGCATTATGCCTTTCCAGTCGGATCAGA-GCTCGCACGCTTGTTTCGTGGGTTGACT
194 CCGACTTGCGCATTATGCCTCTCCAGCCGGATCA-ACGCCCGCACGCTTGTTTCGTGGGTTGACT
* * *
10898409 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGACCCAAGGGTTGCAGTAGTAGGATCG
258 TAGGCATACAGAGTTCATTACCAGTCTAAGATCGGACCGACCCAAGGGTTGCAGTAGCAGGATCG
** * * * *
10898474 ACAGCACGTAGGGGGGATCGGGTCGATCCCCGGCTTTCGCGTTCTGCCTCTCCAACAGGCTGAGC
323 ACAGCACACAGGGGGGATCAGGTCGATCCCCGACTGTCGCATTCTGCCTCTCCAACAGGCTGAGC
* * *
10898539 ACCCACACGCTCGTTTCATGGGTTGGCTTTGGCATACGGAGTTCATTCCATGTCTAAGCATACGG
388 ACCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGA
* * * *
10898604 AGTTCATTCCCAGTCTAAGATAGGACCAGACCGATGGTTGCGATAGTAGGACCAGCAGT
453 AATTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTGCGATAGCAGGACCAGCAGC
* * * * * * * * *
10898663 AAGATCGGTAGCACGCAGGGGGATCGGGTCGATCCCCGGCTTGCGTATTTTGGCTCTCCGATCGG
1 AGGATCGGCAGCACGCAGGGGGA-CCGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGG
* * * * * *
10898728 CTGAGCACCTGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 CTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
* * * *
10898793 CCCAGTCAGACCGAGGGTTGTGCCAGCAGGAC
130 CCCAGCCGGACCGAGGGTTGTGGCAGCGGGAC
10898825 CGACAGCGGG
Statistics
Matches: 586, Mismatches: 81, Indels: 18
0.86 0.12 0.03
Matches are distributed among these distances:
512 123 0.21
513 169 0.29
514 290 0.49
515 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (511 bp):
AGGATCGGCAGCACGCAGGGGGACCGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGC
TGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
CCAGCCGGACCGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAAGGGGACCGGGCCGATCCCC
GACTTGCGCATTATGCCTCTCCAGCCGGATCAACGCCCGCACGCTTGTTTCGTGGGTTGACTTAG
GCATACAGAGTTCATTACCAGTCTAAGATCGGACCGACCCAAGGGTTGCAGTAGCAGGATCGACA
GCACACAGGGGGGATCAGGTCGATCCCCGACTGTCGCATTCTGCCTCTCCAACAGGCTGAGCACC
CACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAAT
TCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTGCGATAGCAGGACCAGCAGC
Found at i:10898600 original size:26 final size:26
Alignment explanation
Indices: 10898570--10898622 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10898560 GTTGGCTTTG
10898570 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
10898596 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10898622 G
1 G
10898623 ATAGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10898978 original size:26 final size:26
Alignment explanation
Indices: 10898949--10899001 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10898939 GTTGACTTAG
10898949 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
10898975 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
10899001 G
1 G
10899002 ATCGAATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:10904118 original size:26 final size:26
Alignment explanation
Indices: 10904089--10904141 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
10904079 GTTGACTTAG
* *
10904089 GCATACAGAGTTTA-TCTCCAGTCTAA
1 GCATACAGAATTCATTC-CCAGTCTAA
*
10904115 GCATATAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
10904141 G
1 G
10904142 ATCGAACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:10904418 original size:159 final size:157
Alignment explanation
Indices: 10904200--10904615 Score: 412
Period size: 159 Copynumber: 2.6 Consensus size: 157
10904190 GGGATCGGGT
* * * * * *
10904200 CGATCCCTGGCTTGCGCATTCTACCTCTCCGGCTGGCTGAGCGCCCGCACAGCT-GTTTCGTGGG
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGAC-CGCTCAGCACCCGCAC-GCTCGTTTCGTGGG
* * * **
10904264 TTGGCTTTGGCAT-CAGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGGCAG
64 TTGGCTTAGGCATAC-GGAGTTCATTCCATGTCTAAG-ACCAGACCAGACCGAGGGTTACGGCAG
* * *
10904327 C-GAGACCGACAGCACAAAGAAAGGGACCGGGC
127 CAG-GACCAACAGCACAAAG-AAGGGACAGGAC
* * * *
10904359 TGATCCCCGGCTTGCGCATTTTGCCTCTCTGACCGACTCAGCACCCGCACGCTCATTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCG-CTCAGCACCCGCACGCTCGTTTCGTGGGT
* * * * * *
10904424 TGACTTAAGCATACGAAGTTCATTACCA-GTCTAAGATCGGACTAGACCGAGGGTTACGGCAGCA
65 TGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCGAGGGTTACGGCAGCA
* ** **
10904488 GGATCAACAGCACGCAGGGGGGACAGGAC
129 GGACCAACAGCACAAAGAAGGGACAGGAC
* * *
10904517 CGATCCCCGGCTTGCGCATTCTGCCTCTCCAACCGC-CAGAACGCCTGCACGTTCGTTTCGTGGG
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGCTCAGCAC-CC-GCACGCTCGTTTCGTGGG
10904581 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
64 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
10904616 ACATACGGAG
Statistics
Matches: 209, Mismatches: 39, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
156 5 0.02
157 6 0.03
158 89 0.43
159 104 0.50
160 5 0.02
ACGTcount: A:0.20, C:0.30, G:0.28, T:0.22
Consensus pattern (157 bp):
CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGCTCAGCACCCGCACGCTCGTTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACCGAGGGTTACGGCAGCAGG
ACCAACAGCACAAAGAAGGGACAGGAC
Found at i:10904581 original size:158 final size:156
Alignment explanation
Indices: 10904112--10904615 Score: 464
Period size: 158 Copynumber: 3.2 Consensus size: 156
10904102 ATCTCCAGTC
* * *
10904112 TAAGCATATAGAA-TTCATTCCCA-GTCTAAGATCGAACTGGATCGAGGGTTGCGGCAGCAGGAT
1 TAAGCATA-CGAAGTTCATT-CCATGTCTAAGATCGAACTAGACCGAGGGTTGCGGCAGCAGGAT
* * * * * * * *
10904175 CGGCAGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTCCGGCTGGCTGA
64 CGACAGCACGCAGGGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGCCAGA
*
10904240 GCGCCCGCACAGCT-GTTTCGTGGGTTGGCT
128 ACG-CCGCAC-GCTCGTTTCGTGGGTTGGCT
** * ** * * * * * *
10904270 TTGGCAT-CAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGC-GAGAC
1 TAAGCATAC-GAAGTTCATTCCATGTCTAAGATCGAACTAGACCGAGGGTTGCGGCAGCAG-GAT
** ** * * *
10904333 CGACAGCACAAAGAAAGGGACCGGGCTGATCCCCGGCTTGCGCATTTTGCCTCTCTGACCGACTC
64 CGACAGCACGCAG-GGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCG-C-C
* * *
10904398 AGCAC-CCGCACGCTCATTTCGTGGGTTGACT
125 AGAACGCCGCACGCTCGTTTCGTGGGTTGGCT
* *
10904429 TAAGCATACGAAGTTCATTACCA-GTCTAAGATCGGACTAGACCGAGGGTTACGGCAGCAGGATC
1 TAAGCATACGAAGTTCATT-CCATGTCTAAGATCGAACTAGACCGAGGGTTGCGGCAGCAGGATC
* * *
10904493 AACAGCACGCAGGGGGGACAGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCAACCGCCAGAA
65 GACAGCACGCAGGGGGGAC-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGCCAGAA
*
10904558 CGCCTGCACGTTCGTTTCGTGGGTTGGCT
129 CGCC-GCACGCTCGTTTCGTGGGTTGGCT
* *
10904587 TAGGCATACGGAGTTCATTCCATGTCTAA
1 TAAGCATACGAAGTTCATTCCATGTCTAA
10904616 ACATACGGAG
Statistics
Matches: 268, Mismatches: 63, Indels: 30
0.74 0.17 0.08
Matches are distributed among these distances:
156 5 0.02
157 13 0.05
158 134 0.50
159 108 0.40
160 5 0.02
161 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (156 bp):
TAAGCATACGAAGTTCATTCCATGTCTAAGATCGAACTAGACCGAGGGTTGCGGCAGCAGGATCG
ACAGCACGCAGGGGGGACGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGCCAGAACG
CCGCACGCTCGTTTCGTGGGTTGGCT
Found at i:10904627 original size:26 final size:26
Alignment explanation
Indices: 10904591--10904641 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
10904581 TTGGCTTAGG
10904591 CATACGGAGTTCATT-CCATGTCTAAA
1 CATACGGAGTTCATTCCCA-GTCTAAA
10904617 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
10904642 GATCGGACCG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:10905478 original size:158 final size:155
Alignment explanation
Indices: 10904980--10905478 Score: 457
Period size: 157 Copynumber: 3.2 Consensus size: 155
10904970 CCCAGTCTAA
* * ** **
10904980 GCATACAGAGTTCATCTCCAGTCTAAGATCAGACCGGATCGAGGGTTACGATAGCAGGATCGGTA
1 GCATACAGAGTTCAT-TCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * * * ** *
10905045 GCATGTAGGGGGGATTGGGCCAATCCTCGGCTTGCGCATTCTACCTTCCGGTCGGCTGGGTGCCC
65 GCATGTAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTAGCTTCCGGTCGGCTAAGCGCCC
* *
10905110 GCACGCCCGTTTTGTGGGTTGGCTTAG
130 GCA-TCTCGTTTTGTGGGTTGGCTTAG
* ** * ** * * * * *
10905137 GCGTAGGGATTTCATTCCATGTCTAAGCCCCAG-TCAGATCGAGGGTTGTGGCAGCGGGACCTAC
1 GCATACAGAGTTCATTCCA-GTCTAAG-ATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGAC
* ** * * * * *
10905201 AGCATGTAGAGGGGA-CGGGTTGATCCCCGACTTGCGCATTAT-GTCTTTTCGGATC-ACTCAGC
64 AGCATGTAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTAG-C-TTCCGG-TCGGCTAAGC
* *
10905263 GCCCGCACTCTCGTTTTGTGGGTTGACTTAT
126 GCCCGCA-TCTCGTTTTGTGGGTTGGCTTAG
* * *
10905294 GCATACAAAGTTCATTCCCAGACTAAGATCGGATCGGATCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACAGAGTTCATT-CCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * * *
10905359 GCACGCAGGGGGGATGGGGCCGATCCCCGGCTTGCGCATTCTAGCTCTCCGGCCGGCTAAGCGCC
65 GCATGTAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTAGCT-TCCGGTCGGCTAAGCGCC
*
10905424 CGCATACTCGTTTCGTGGGTTGGCTTAG
129 CGCAT-CTCGTTTTGTGGGTTGGCTTAG
*
10905452 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCA-GTCTAAG
10905479 CATATGGAGT
Statistics
Matches: 262, Mismatches: 67, Indels: 25
0.74 0.19 0.07
Matches are distributed among these distances:
156 27 0.10
157 148 0.56
158 86 0.33
159 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.25
Consensus pattern (155 bp):
GCATACAGAGTTCATTCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGACAG
CATGTAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTAGCTTCCGGTCGGCTAAGCGCCCG
CATCTCGTTTTGTGGGTTGGCTTAG
Found at i:10905488 original size:26 final size:26
Alignment explanation
Indices: 10905452--10905504 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10905442 GTTGGCTTAG
*
10905452 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCACTCCCA-GTCTAA
*
10905478 GCATATGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
10905504 G
1 G
10905505 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:10905690 original size:862 final size:864
Alignment explanation
Indices: 10904055--10906082 Score: 2371
Period size: 862 Copynumber: 2.3 Consensus size: 864
10904045 TGGTCGGCTA
* * *
10904055 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTTATCTCCAGTCTAAGCATA
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
* * * * * * *
10904120 TAGAATTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
66 CAGAGTTCATTCCCAGTCTAAGATCG-ACCGGATCGAGGGTTACGACAGCAGGATCGGTAGCATG
*
10904185 CAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTCCGGCTGGCTGAGCGCCCGCAC
130 CAGGGGGGATCGGGCCGATCCC-GGCTTGCGCATTCTACCTCTCCGGC-GGCTGAGCGCCCGCAC
* *
10904250 AG-CTGTTTCGTGGGTTGGCTTTGGCATCAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTG
193 -GCCCGTTTCGTGGGTTGGCTTAGGCAT-AGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTG
*
10904314 AGGGTTGTGGCAGCGAGACCGACAGCACAAAGAAAGGGACCGGGCTGATCCCCGGCTTGCGCATT
256 AGGGTTGTGGCAGCGAGACCGACAGCACAAAGAAAGGGACCGGGCTGATCCCCGACTTGCGCATT
* * *
10904379 TTGCCTCTCTGACCGACTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAAGCATACGAAGTT
321 ATGCCTCTCGGACCGACTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAAGCATACAAAGTT
*
10904444 CATTACCAGTCTAAGATCGGACTAGACCGAGGGTTACGGCAGCAGGATCAACAGCACGCAGGGGG
386 CATTACCAGACTAAGATCGGACTAGACCGAGGGTTACGGCAGCAGGATCAACAGCACGCAGGGGG
* **
10904509 GACAGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCAACCGCCAGAACGCCTGCACGTTCGTT
451 GACAGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCAACCGCCAGAACGCCCGCACACTCGTT
*
10904574 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACATACGGAGTTCATTCCCAGTC
516 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACATACGGAGTTCACTCCCAGTC
* ** * * *
10904639 TAAGATCGGACCGGACCGAGGGCTGCGACAGGAAGACCAACAGCAGGATTGGCAGCACATAGGGG
581 TAAGATCAGACCAAACCGAGGGCTGCGACAGGAAGACCAACAGCAGGATCGACAGCACATAGGAG
* * *
10904704 GGATCGGACCGATCCCCGGCTTGCACATTCTACCTCTTCGGCCAGCTGAGTGCCCGCACGCTCAT
646 GGACCGGACCGATCCCCGGCTTGCACATTCTACCTCTCCGACCAGCTGAGTGCCCGCACGCTCAT
* * *
10904769 TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGG-TG
711 TTCAGGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTG
* * * *** * * * * * *
10904833 GTAGCAGGACCAGCAGTTGGATCGGTAGCATACAGAGGGGGACCGGGCTGATCCCCGACTTGTGC
776 GCAACAAGACCAGCAACAGGATCAGCAGCATACAGAGAGGGACCGAGCTAATCCCCGACTTGCGC
*
10904898 ATTATGCCTCTCCGACCGA-T-TG
841 ATTATACCTCTCCGACCGACTCTG
* ** *
10904920 AGCGCTCGCACGCTCGTTTCGTGATTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATA
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
*
10904985 CAGAGTTCA-TCTCCAGTCTAAGATCAGACCGGATCGAGGGTTACGATAGCAGGATCGGTAGCAT
66 CAGAGTTCATTC-CCAGTCTAAGATC-GACCGGATCGAGGGTTACGACAGCAGGATCGGTAGCAT
* * * * *
10905049 GTAGGGGGGATTGGGCCAATCCTCGGCTTGCGCATTCTACCT-TCCGGTCGGCTGGGTGCCCGCA
129 GCAGGGGGGATCGGGCCGATCC-CGGCTTGCGCATTCTACCTCTCCGG-CGGCTGAGCGCCCGCA
* * * *
10905113 CGCCCGTTTTGTGGGTTGGCTTAGGCGTAGGGATTTCATTCCATGTCTAAGCCCCAGTCAGA-TC
192 CGCCCGTTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACT-
* * *** * *
10905177 GAGGGTTGTGGCAGCGGGACCTACAGCATGTAG-AGGGGA-CGGGTTGATCCCCGACTTGCGCAT
255 GAGGGTTGTGGCAGCGAGACCGACAGCACAAAGAAAGGGACCGGGCTGATCCCCGACTTGCGCAT
* * * * * * * *
10905240 TATGTCTTTTCGGATC-ACTCAGCGCCCGCACTCTCGTTTTGTGGGTTGACTTATGCATACAAAG
320 TATG-CCTCTCGGACCGACTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAAGCATACAAAG
* * * * *
10905304 TTCATTCCCAGACTAAGATCGGA-TCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGG
384 TTCATTACCAGACTAAGATCGGACT-AGACCGAGGGTTACGGCAGCAGGATCAACAGCACGCAGG
** * ** * * *
10905368 GGGGATGGGGCCGATCCCCGGCTTGCGCATTCTAG-CTCTCCGGCCGGCTA-AGCGCCCGCATAC
448 GGGGACAGGACCGATCCCCGGCTTGCGCATTCT-GCCTCTCCAACC-GCCAGAACGCCCGCACAC
* *
10905431 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCACTCC
511 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACATACGGAGTTCACTCC
* * ** * * * ** *
10905496 CAGTCTAAGATCAGACCAAACCGAGGGTTTCGGTAGTAGGACTAGTAGCAGGATCGACAGCACGT
576 CAGTCTAAGATCAGACCAAACCGAGGGCTGCGACAGGAAGACCAACAGCAGGATCGACAGCACAT
** ** * *
10905561 AGAGAGGGACCGGGTCGATCTTCGGCTTGCGCATTCTACCTCTCCGACCTA-CTGAGCT-CCTGC
641 AG-GAGGGACCGGACCGATCCCCGGCTTGCACATTCTACCTCTCCGACC-AGCTGAG-TGCCCGC
10905624 ACGCTCATTT-AGGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACC
703 ACGCTCATTTCAGGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACC
* * *
10905688 GAGGGTTATGGCAACAAGACCGGTAACAGGATCAGCAGCATGCAGAGAGGGACCGAGCTAATCCC
768 GAGGG-T-TGGCAACAAGACCAGCAACAGGATCAGCAGCATACAGAGAGGGACCGAGCTAATCCC
* * * *
10905753 TGGCTTGCGTATTATACCTCTCCGGCCGACCTCTCTG
831 CGACTTGCGCATTATACCTCTCCGACCGA---CTCTG
* * *
10905790 -GTCGGTTGAGCACCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATGCGAAGTTCATCCCCAAT
1 AG-C------GC-CC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
* * ** * *
10905854 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGTCCAAATTGAGGGCTACGACAGCAGGATC
57 CTAAGCATACAGAGTTCATTCCCAGTCTAAGATC-GACCGGATCGAGGGTTACGACAGCAGGATC
* * * * * *
10905919 AGTAGCATGCAGGAGGGATCGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAG
121 GGTAGCATGCAGGGGGGATCGGGCCGAT-CCCGGCTTGCGCATTCTACCTCTCCG-GCGGCTGAG
* * * **
10905984 CGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCTTAG
184 CGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCCCCAG
* * * *
10906049 CCGGACTGAGGGTTGTGGCAACAAGATCGACAGC
248 CCAGACTGAGGGTTGTGGCAGCGAGACCGACAGC
10906083 GGGATCGACA
Statistics
Matches: 971, Mismatches: 156, Indels: 58
0.82 0.13 0.05
Matches are distributed among these distances:
861 1 0.00
862 339 0.35
863 75 0.08
864 102 0.11
865 212 0.22
866 2 0.00
869 2 0.00
870 3 0.00
876 2 0.00
877 1 0.00
878 136 0.14
879 95 0.10
880 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (864 bp):
AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
CAGAGTTCATTCCCAGTCTAAGATCGACCGGATCGAGGGTTACGACAGCAGGATCGGTAGCATGC
AGGGGGGATCGGGCCGATCCCGGCTTGCGCATTCTACCTCTCCGGCGGCTGAGCGCCCGCACGCC
CGTTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGT
TGTGGCAGCGAGACCGACAGCACAAAGAAAGGGACCGGGCTGATCCCCGACTTGCGCATTATGCC
TCTCGGACCGACTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAAGCATACAAAGTTCATTA
CCAGACTAAGATCGGACTAGACCGAGGGTTACGGCAGCAGGATCAACAGCACGCAGGGGGGACAG
GACCGATCCCCGGCTTGCGCATTCTGCCTCTCCAACCGCCAGAACGCCCGCACACTCGTTTCGTG
GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACATACGGAGTTCACTCCCAGTCTAAGA
TCAGACCAAACCGAGGGCTGCGACAGGAAGACCAACAGCAGGATCGACAGCACATAGGAGGGACC
GGACCGATCCCCGGCTTGCACATTCTACCTCTCCGACCAGCTGAGTGCCCGCACGCTCATTTCAG
GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGGCAAC
AAGACCAGCAACAGGATCAGCAGCATACAGAGAGGGACCGAGCTAATCCCCGACTTGCGCATTAT
ACCTCTCCGACCGACTCTG
Found at i:10906515 original size:159 final size:159
Alignment explanation
Indices: 10906341--10906716 Score: 390
Period size: 158 Copynumber: 2.4 Consensus size: 159
10906331 CGGTTGAGCA
* * * * *
10906341 CCCGCACGC-CTGTTTCGTGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAG-
1 CCCGCACGCTC-GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
* * **
10906404 CCAAACCGAGGGTTGTGGCAGCGGGACTTG-CAGCATGCAAAGGGG-GACCAGGTCGATCCTCGC
65 CCAAACCGAAGGTTGCGGCAGCAAGA-TTGACAGCA--CAAAGGGGAGACCAGGTCGATCCTCGC
**
10906467 CTTACGCATTATGCCTCT-TCGACCGGCTCAGTG
127 CTTACGCATTATGCCTCTCT-GACCGGCTCAACG
* * * * *
10906500 CTCGCACGCTCGTTTCATGGGCTGACTTATGCATACGGAGTTCATTCCCATAG--TAAG-ATCGG
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCAT-GTCTAAGCACCAG
* * ** * *
10906562 ACCAGACCGAAGGTTGCGGTAGCAAGATTGACAGCACGTAGGGGAGACCAGGTTGATCCTCGGCT
64 ACCAAACCGAAGGTTGCGGCAGCAAGATTGACAGCACAAAGGGGAGACCAGGTCGATCCTCGCCT
* * * *
10906627 TGCGCATTCTGCCTCTCTGGCCGGCTGAACG
129 TACGCATTATGCCTCTCTGACCGGCTCAACG
*
10906658 CCCGCACGCTCTTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
10906717 TATGGAGTTC
Statistics
Matches: 177, Mismatches: 30, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
156 1 0.01
157 10 0.06
158 92 0.52
159 68 0.38
160 5 0.03
161 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
CAAACCGAAGGTTGCGGCAGCAAGATTGACAGCACAAAGGGGAGACCAGGTCGATCCTCGCCTTA
CGCATTATGCCTCTCTGACCGGCTCAACG
Found at i:10906718 original size:26 final size:26
Alignment explanation
Indices: 10906688--10906740 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10906678 GTTGACTTAG
10906688 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
10906714 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10906740 G
1 G
10906741 ATCAGGTCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10907970 original size:26 final size:26
Alignment explanation
Indices: 10907930--10907982 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10907920 GTTGACTTAG
10907930 GCATACGGAGCTCATCCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
* * *
10907956 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
10907982 G
1 G
10907983 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCCAGTCTAA
Found at i:10908205 original size:874 final size:863
Alignment explanation
Indices: 10906169--10909353 Score: 2749
Period size: 874 Copynumber: 3.7 Consensus size: 863
10906159 CGTACATTCG
* **
10906169 TTTCATGGGTTGACTTAGGCGTACGGAGTTCATCCGTAGTCTAAGCATACGGAGTTCATTCTC-G
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCTCAG
* * * * * * *
10906233 ATCTAAGATCGAACCGGACCGAGGGTTGTGACAGCAGGATCGGCAGCAGGCAGAAGGGACCGAGC
66 -TCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGAAG-AGGGACCGGGC
* * * *
10906298 C-AGTCCCCGACTTACGCATTT-TGCCTCTTCG-GTCGGTTGAGCACCCGCACGCCTGTTTCGTG
129 CGA-TCCCCGGCTTACGC-TTTCTGCCTCTCCGACT-GGTTGAGCACCC-CACGCCCGTTTCGTG
* * *
10906360 GGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGGCAG
190 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAG
* * * * *
10906425 CGGGACTTG-CAGCATGCAAAGGGGGACCAGGTCGATCCTCGCCTTACGCATTATGCCTCTTCGA
255 CGGGAC-CGACAGCATGCAAAGGGGGACCA-GCCGATCCCCG-CTTGCGCATTATGCCTCTTCGG
* * * *
10906489 CCGGCTC-AGTGCTCGCACGCTCGTTTCATGGGCTGACTTATGCATACGGAGTTCATTCCCATAG
317 CCGGCTCAACT-CCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGAAGTTCATTCCC-T-G
* * * *
10906553 --TAAGATCG-GACCAGACCGAA-GGTTGCGGTAGCAAGATTGACAGCACGTAGGGGAGACCAGG
379 TCTAAGATCGAGACCAGACC-AAGGGTTGC-GTAGTAGGATTGACAGCACGCAGGGGGGACCAGG
* * * * * *
10906614 TTGATCCTCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAACGCCCGCACGCTCTTTTCATGGG
442 TTGATCCCCGACTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGG
10906679 -TTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
507 TTTG-CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
* * * ** *
10906743 CAGGTCAGATCGAGGGTTGTAGCAGTAGGACCAGCAACAGGATCGACAGCATGGAGGGGGGGACC
571 CAGATCAGACCGAGGGTTGTAGCAGTAGGACCAGCAACAGGATAGACAGCATCCAGGGAGGGACC
* * * * * * ***
10906808 GGGCCGATCCTCGGCTTGTGCATTCTGCCTCTTCGGTCAACAGAGCGCCCGTACGTTCGTTTCAG
636 AGGCCGATCCTCAGCTTATGCATTCTACCTCTTCGGTCAACAGAGCACCCGCACGCAAGTTTCAG
** * * * * *** * *
10906873 GGGTTGGCTTAGGCATACGGTGTTCATTCCATGTATAAGCCCCAGTCGGACTGAGGGTTGTGGTA
701 GGGTTGGCTTAGGCATACGGTGTTCAGACCATGTATAAGCACAAGCCAGAAAAAGGATTGTGATA
* * * *** * * * *
10906938 GCAGAACCGATAGCAGAATCGACAGCACCCAGAGGGGGATCGGGTTGATCCTCGACTTGCGCATT
766 GCAGAA-C-ATAGAAGAATCGACAGAACCCAGACGACCACCCGGTTGATCCCCGACTTGCGCATC
* * *
10907003 ATGCCTCTCCGATCGGTTGAGCCCCCGCACGCTCA
829 ATGCCCCTCCGATCGGCTGAGCCCCCACACGCTCA
* * * * * * *
10907038 TTTCATGGGTTGACTTGGGTAGATGAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCTTAG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCTCAG
* * * * * *
10907103 TCTAAGATCGGTCCAGACCAAGGGTTGCGGGAGTAGGATCGGCAGCACGTAAGAGGCACCGGGCT
66 TCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACG-AAGAGGGACCGGGCC
* * ** * * * * * *
10907168 GATGCTCGGCTTGTGCATTCTGCCTCTCTGACTGGCTAAGCGCCCCCACGCCCGTTTTGTGGGTT
130 GATCCCCGGCTTACGCTTTCTGCCTCTCCGACTGGTTGAGC-ACCCCACGCCCGTTTCGTGGGTT
** **
10907233 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGATCGAGGGTTGTGGCAGTAGG
194 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCGGG
* * * * *
10907298 ACCGATAGCATGCAGAGGGGGACCAGACCGATCCCCGTCTTGCGTATGATGCCTCTTCGGCTGGC
259 ACCGACAGCATGCAAAGGGGGACCAG-CCGATCCCCG-CTTGCGCATTATGCCTCTTCGGCCGGC
* *
10907363 TCAACTCCCGCACACTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCTGTCTAAGAT
322 TCAACTCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGAAGTTCATTCCCTGTCTAAGAT
* *
10907428 CGAG-CCAGACCAAGGGTTCCGATAGTAGGATTGACAGCATGCAGGGGGGACCAGGTTGATCCCC
387 CGAGACCAGACCAAGGGTTGCG-TAGTAGGATTGACAGCACGCAGGGGGGACCAGGTTGATCCCC
* *
10907492 GACTTGTGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTTGCTTAG
451 GACTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTTGCTTAG
* *
10907557 GCATACAGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCAGATCAGAC
516 GCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGAC
* * ** *
10907622 CGAGGGTTGT-GACGGTAGGGCCAGCAGTAGGATAGGCAGCATCCA-GGAGGGACCAGGCC-AGT
581 CGAGGGTTGTAG-CAGTAGGACCAGCAACAGGATAGACAGCATCCAGGGAGGGACCAGGCCGA-T
* * ** * * *
10907684 CC-CTAGCTTATGTATTCTACCTCTTTGG-CTGGCTGAGCACCCGCATGCAAGTTTCATGGGTTG
644 CCTC-AGCTTATGCATTCTACCTCTTCGGTC-AACAGAGCACCCGCACGCAAGTTTCAGGGGTTG
* ** *
10907747 GCTTAGGCATACGAAG-GCTT-AGGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTG
707 GCTTAGGCATACG--GTG-TTCA---GACCA-TGTAT-AA-GCACAAGCCAGAAAAA-GG-ATTG
* * * * * *
10907810 -GCATAGCAGAA-ATATGAAG-AT-GTGCTTGAACCCA-CCTACCACCCGTTTGATCCCCGGCTT
761 TG-ATAGCAGAACATA-GAAGAATCG-AC-AGAACCCAGACGACCACCCGGTTGATCCCCGACTT
* * * **
10907870 GCGCATCCTGCCCCTCTGGTCGGCTGAGCGTCCACACGCTCA
822 GCGCATCATGCCCCTCCGATCGGCTGAGCCCCCACACGCTCA
* * * *
10907912 TTTCGTGGGTTGACTTAGGCATACGGAGCTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCTCAG
* * ** *
10907977 TCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCAAGATCGATAGCACGAAGAGGGGAACGGGCC
66 TCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGAAGA-GGGACCGGGCC
* *
10908042 GATCCCCGGCTTACGCTTTCTGCCTCTCCGACTGGTTGAGCACCTCCATGCCCATTTCGTGGGTT
130 GATCCCCGGCTTACGCTTTCTGCCTCTCCGACTGGTTGAGCACC-CCACGCCCGTTTCGTGGGTT
* *
10908107 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGTCCCAGCCAGATCGAGGGTTGTGGCAACGGG
194 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCGGG
* * * *
10908172 ACCGACAGCGTGCAAAGGGGGACCGAGCCGATCCCTAGGTTGCGCATTATGCCTCTCCGGCCGGC
259 ACCGACAGCATGCAAAGGGGGACC-AGCCGATCCC-CGCTTGCGCATTATGCCTCTTCGGCCGGC
* * * * *
10908237 TCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGA
322 TCAACTCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGA-AGTTCATTCCCTGTCTAAGA
** * * ** ** * * * *
10908301 TC-AGACTGGACCGAGGGTTGTGGCGATAGGATCAACAGCACGCAAGGTGGG-CCGGGTCGAACC
386 TCGAGACCAGACCAAGGGTTGCGTAG-TAGGATTGACAGCACGC-AGGGGGGACCAGGTTGATCC
* * * *
10908364 CCGACTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTT
449 CCGACTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTTGCTT
*** * * *
10908429 AGGCATACGGAGTTCATTCCATGTCTAAGCATGCAGAGTTCATTCCCAGTCTAAGATCTGACCGG
514 AGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAG
** * * ** * * *
10908494 ACCGAGGGTTAAAGCAGTAGGACTAGCAACAGGATCGACAGCATGTAAGG-GGGATCGGGCCGAT
579 ACCGAGGGTTGTAGCAGTAGGACCAGCAACAGGATAGACAGCATCCAGGGAGGGACCAGGCCGAT
* ** * * **** * * ** ** *
10908558 -CTCCGACTTGCGCATTCTACCTCTCCTGTCGGTTGAACGCTTGCACGCTTGTTTC-GTCGGTTG
644 CCTCAG-CTTATGCATTCTACCTCTTCGGTCAACAGAGCACCCGCACGCAAGTTTCAG-GGGTTG
* * * ** * * * * * ** * **
10908621 GCTAAGGCATATGGAGTTCATTCCATGTCTAATCTCCAA-TCGGACCAAGGGTTGTGGCAGCAGG
707 GCTTAGGCATACGGTGTTCAGACCATGTATAAGC-ACAAGCCAGAAAAAGGATTGTGATAGCA-G
* ** ** * * * ** * * * * *
10908685 ACCGGCAGTGGGATCGACAGCACGCAGA-GAGGGA-TCGAGCTGATCCCCGGCTTGCGTATTATG
770 AAC-ATAGAAGAATCGACAGAACCCAGACGA-CCACCCG-GTTGATCCCCGACTTGCGCATCATG
* ** * * ** *
10908748 CCTCTCCGGCCGGTTGAGCACCCGTACGCTCG
832 CCCCTCCGATCGGCTGAGCCCCCACACGCTCA
* * * * * *
10908780 TTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCTAGTCCAAGCATATGGAGTTCATTCCCAG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCTCAG
* ** * * * * * * * *
10908845 TCTAAGATCGAATTGGATCGAGGGTTACGGCAGCAGGATCGGCAGTATAC-AGGGGGGATCAGGC
66 TCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAG--CACGAAGAGGGACCGGGC
* * * * *
10908909 CGATCCCCGGCTTACGCATTCTACCTCTCTGGCCGGTTGAGCACCCGCACGCCCGTTTCGTGGGT
129 CGATCCCCGGCTTACGCTTTCTGCCTCTCCGACTGGTTGAGCACCC-CACGCCCGTTTCGTGGGT
*** *
10908974 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCGAGGGTTGTGGCAGCGA
193 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCG-
* * * * * * *
10909039 GG-CCGGCAGCATGCAGAGGTGGACCGGGTCGATCCCCGGCTTGCGCATTATACCTCTTCGGTCG
257 GGACCGACAGCATGCAAAGGGGGACC-AGCCGATCCCC-GCTTGCGCATTATGCCTCTTCGGCCG
* * * * *
10909103 GCTC-AGTGCCCGCATGCTCGTTTCATGGGTTGACTTATTCATACGGAGTTCATTCTCAT-TCTA
320 GCTCAACT-CCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGAAGTTCATTC-CCTGTCTA
** * * * * * * * * *
10909166 AGATC-AGACTGGACCGAGGGTTGTGGCAGCAAGATCGACAAG-ACGTAGGGGGGACCGGGTCGA
383 AGATCGAGACCAGACCAAGGGTTG-CGTAGTAGGATTGAC-AGCACGCAGGGGGGACCAGGTTGA
* * * * * * *
10909229 TCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGACCGCACGCTCATTTCATGTGTTGG
446 TCCCCGACTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTTG
**
10909294 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
511 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
10909354 TTTGAGCCAC
Statistics
Matches: 1873, Mismatches: 371, Indels: 145
0.78 0.16 0.06
Matches are distributed among these distances:
865 7 0.00
866 5 0.00
867 26 0.01
868 607 0.32
869 518 0.28
870 21 0.01
872 5 0.00
873 20 0.01
874 621 0.33
875 29 0.02
876 3 0.00
877 11 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (863 bp):
TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCTCAG
TCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGAAGAGGGACCGGGCCG
ATCCCCGGCTTACGCTTTCTGCCTCTCCGACTGGTTGAGCACCCCACGCCCGTTTCGTGGGTTGG
CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCGGGAC
CGACAGCATGCAAAGGGGGACCAGCCGATCCCCGCTTGCGCATTATGCCTCTTCGGCCGGCTCAA
CTCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGAAGTTCATTCCCTGTCTAAGATCGAG
ACCAGACCAAGGGTTGCGTAGTAGGATTGACAGCACGCAGGGGGGACCAGGTTGATCCCCGACTT
GCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTTGCTTAGGCATA
CGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGG
GTTGTAGCAGTAGGACCAGCAACAGGATAGACAGCATCCAGGGAGGGACCAGGCCGATCCTCAGC
TTATGCATTCTACCTCTTCGGTCAACAGAGCACCCGCACGCAAGTTTCAGGGGTTGGCTTAGGCA
TACGGTGTTCAGACCATGTATAAGCACAAGCCAGAAAAAGGATTGTGATAGCAGAACATAGAAGA
ATCGACAGAACCCAGACGACCACCCGGTTGATCCCCGACTTGCGCATCATGCCCCTCCGATCGGC
TGAGCCCCCACACGCTCA
Found at i:10908265 original size:159 final size:158
Alignment explanation
Indices: 10908094--10908457 Score: 423
Period size: 158 Copynumber: 2.3 Consensus size: 158
10908084 CCTCCATGCC
* *
10908094 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-TCCCAG-CCAGATCGAG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGAT--CAGACCAGACCGAG
* * ** * *
10908157 GGTTGTGGCAACGGGACCGACAGCGTGCAAAGG-GGGACCGAGCCGATCCCTAG-GTTGCGCATT
64 GGTTGTGGCAACAGGACCAACAGCACGC-AAGGTGGG-CCGAGCCGAACCC-AGACTTGCGCATT
*
10908220 ATGCCTCTCCGGCCGGCTCAGCGCCCGCACGCT
126 ATACCTCTCCGGCCGGCTCAGCGCCCGCACGCT
* * * **
10908253 CATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATCAGACTGGACCGAGG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGG
* * * * * * *
10908317 GTTGTGGCGATAGGATCAACAGCACGCAAGGTGGGCCGGGTCGAACCCCGACTTGCGCATTCTAC
65 GTTGTGGCAACAGGACCAACAGCACGCAAGGTGGGCCGAGCCGAACCCAGACTTGCGCATTATAC
* *
10908382 CTCTCCGGCCGGCTGAGCGCCCGTACGCT
130 CTCTCCGGCCGGCTCAGCGCCCGCACGCT
*
10908411 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
10908458 CATGCAGAGT
Statistics
Matches: 172, Mismatches: 27, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
157 4 0.02
158 94 0.55
159 70 0.41
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGG
TTGTGGCAACAGGACCAACAGCACGCAAGGTGGGCCGAGCCGAACCCAGACTTGCGCATTATACC
TCTCCGGCCGGCTCAGCGCCCGCACGCT
Found at i:10908460 original size:26 final size:26
Alignment explanation
Indices: 10908431--10908483 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10908421 GTTGGCTTAG
*
10908431 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
10908457 GCATGCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10908483 G
1 G
10908484 ATCTGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Done.