Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 63 of 402
Found at i:10908825 original size:26 final size:26
Alignment explanation
Indices: 10908796--10908846 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
10908786 GGGTTGACTT
10908796 AAGCATACGGAGTTCA-TCCCTAGTCC
1 AAGCATACGGAGTTCATTCCC-AGTCC
*
10908822 AAGCATATGGAGTTCATTCCCAGTC
1 AAGCATACGGAGTTCATTCCCAGTC
10908847 TAAGATCGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
AAGCATACGGAGTTCATTCCCAGTCC
Found at i:10909047 original size:355 final size:361
Alignment explanation
Indices: 10908362--10909047 Score: 852
Period size: 355 Copynumber: 1.9 Consensus size: 361
10908352 CCGGGTCGAA
* * *
10908362 CCCCGACTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGC
1 CCCCGACTTGCGCATTATACCTCTCCGGCCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGAC
* * * *
10908427 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATGCAGAGTTCATTCCCAGTCTAAGATCTGACC
66 TTAAGCATACGGAGTTCATCCCATGTCCAAGCATACAGAGTTCATTCCCAGTCTAAGATCTGACC
** *
10908492 GGACCGAGGGTTAAAGCAGTAGGACTAGCAACAGGATCGACAGCATGTAAGGGGGATCGGGCCGA
131 GGACCGAGGGTT-AAGC---AGGACTAG--ACAGGATCGACAGCATACAAGGGGGATCAGGCCGA
* * * * ** **
10908557 TCTCCGACTTGCGCATTCTACCTCTCCTGTCGGTTGAACGCTTGCACGCTTGTTTCGTCGGTTGG
190 TCCCCGACTTACGCATTCTACCTCTCCTGCCGGTTGAACACCCGCACGCCCGTTTCGTCGGTTGG
* * *
10908622 CTAAGGCATATGGAGTTCATTCCATGTCTAATCTCCAATCGGACCAAGGGTTGTGGCAGCAGGAC
255 CTAAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCAAGGGTTGTGGCAGCAGGAC
10908687 CGGCAGTGGGATCGACAGCACGCAGAGAGGGATCGAGCTGAT
320 CGGCAGTGGGATCGACAGCACGCAGAGAGGGATCGAGCTGAT
* * * *
10908729 CCCCGGCTTGCGTATTATGCCTCTCCGGCCGGTTGAGCACCCGTACGCTCGTTTCGTGGGTTGAC
1 CCCCGACTTGCGCATTATACCTCTCCGGCCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGAC
**
10908794 TTAAGCATACGGAGTTCATCCC-TAGTCCAAGCATATGGAGTTCATTCCCAGTCTAAGATC-GAA
66 TTAAGCATACGGAGTTCATCCCAT-GTCCAAGCATACAGAGTTCATTCCCAGTCTAAGATCTG-A
** * * * *
10908857 TTGGATCGAGGGTT-A-C-GG-C-AG-CAGGATCGGCAGTATACAGGGGGGATCAGGCCGATCCC
129 CCGGACCGAGGGTTAAGCAGGACTAGACAGGATCGACAGCATACAAGGGGGATCAGGCCGATCCC
* * * *
10908916 CGGCTTACGCATTCTACCTCT-CTGGCCGGTTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTT
194 CGACTTACGCATTCTACCTCTCCT-GCCGGTTGAACACCCGCACGCCCGTTTCGTCGGTTGGCTA
* * *
10908980 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCGAGGGTTGTGGCAGCGAGG-CCG
258 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCAAGGGTTGTGGCAGC-AGGACCG
10909044 GCAG
322 GCAG
10909048 CATGCAGAGG
Statistics
Matches: 275, Mismatches: 40, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
354 2 0.01
355 139 0.51
356 3 0.01
358 2 0.01
359 1 0.00
360 2 0.01
364 1 0.00
365 1 0.00
366 2 0.01
367 122 0.44
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (361 bp):
CCCCGACTTGCGCATTATACCTCTCCGGCCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGAC
TTAAGCATACGGAGTTCATCCCATGTCCAAGCATACAGAGTTCATTCCCAGTCTAAGATCTGACC
GGACCGAGGGTTAAGCAGGACTAGACAGGATCGACAGCATACAAGGGGGATCAGGCCGATCCCCG
ACTTACGCATTCTACCTCTCCTGCCGGTTGAACACCCGCACGCCCGTTTCGTCGGTTGGCTAAGG
CATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCAAGGGTTGTGGCAGCAGGACCGGCAG
TGGGATCGACAGCACGCAGAGAGGGATCGAGCTGAT
Found at i:10909085 original size:868 final size:863
Alignment explanation
Indices: 10905922--10909353 Score: 3297
Period size: 869 Copynumber: 3.9 Consensus size: 863
10905912 CAGGATCAGT
* * * * * *
10905922 AGCATGC-AGGAGGGATCGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCG
1 AGCATGCAAGG-GGGACCGGGCCGAT-CCCGACTTGTGCATTCTACCTCTCTG-TCGGCTGAGCG
* * * * *
10905986 CCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC-CTTAGC
63 CCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTATAAGCTC-CAAC
* * * * *
10906050 CGGACTGAGGGTTGTGGCAACA-AGATCGACAGCGGGATCGACAGCATGCAGAGGGGGACCGGGC
127 CGGACTAAGGGTTGTGGCAGCAGA-ACCGACAGCGGGATCGACAGCACGCAGAGAGGGACCGGGC
* * * * * * ** *
10906114 TGATCCTCGGCTTACGCATTATGCGTCTCCGATTGGCTGAGCGTCCGTACATTCGTTTCATGGGT
191 TGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCATGGGT
* ** *
10906179 TGACTTAGGCGTACGGAGTTCATCCGTAGTCTAAGCATACGGAGTTCATTCTC-GATCTAAGATC
256 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG-TCTAAGATC
* * * * * *
10906243 GAACCGGACCGAGGGTTGTGACAGCAGGATCGGCAGCAGGCAGAAGGGACCGAGCC-AGTCCCCG
320 GAACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGAAGAAGGGA-CGGGCCGA-TCCCCG
* * ** *
10906307 ACTTACGCATTTTGCCTCT-TCGGTCGGTTGAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAG
383 GCTTACGCATTCTGCCTCTCT-GACCGGTTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAG
* * *
10906371 GCGTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGGCAGCGGGACTTG-C
447 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGAC-CGAC
* * * * * *
10906435 AGCATGCAAAGGGGGACCAGGTCGATCCTCGCCTTACGCATTATGCCTCTTCGACCGGCTCAGTG
511 AGCATGCAAAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCG
* * * *
10906500 CTCGCACGCTCGTTTCATGGGCTGACTTATGCATACGGAGTTCATTCCCA-TAGTAAGATCGGAC
576 CCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGT-CTAAGATCAGAC
* * * * * *
10906564 CAGACCGAAGGTTGCGGTAGCAAGATTGACAGCACGTAGGGGAGACCAGGTTGATCCTCGGCTTG
640 CAGACCGAGGGTTGCGG-AGCAAGATCGACAGCACGTAGGGGGGACCAGGTCGATCCCCGACTTG
* * * * *
10906629 CGCATTCTGCCTCTCTGGCCGGCTGAACGCCCGCACGCTCTTTTCATGGGTTGACTTAGGCATAC
704 CGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAC
** * *
10906694 GGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGGTCAGATCGAGGG
769 GGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGG
*
10906759 TTGTAGCAGTAGGACCAGCAACAGGATCGAC
834 TT-AAGCAGTAGGACCAGCAACAGGATCGAC
* * * * * ** *
10906790 AGCATGGAGGGGGGGACCGGGCCGATCCTCGGCTTGTGCATTCTGCCTCTTCGGTCAACAGAGCG
1 AGCATGCA-AGGGGGACCGGGCCGATCC-CGACTTGTGCATTCTACCTC-TCTGTCGGCTGAGCG
* ** * *
10906855 CCCGTACG-TTCGTTTCAG-GGGTTGGCTTAGGCATACGGTGTTCATTCCATGTATAAGCCCCAG
63 CCCGCACGCTT-GTTTC-GTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTATAAGCTCCAA
* * * * * * * * * *
10906918 TCGGACTGAGGGTTGTGGTAGCAGAACCGATAGCAGAATCGACAGCACCCAGAGGGGGATCGGGT
126 CCGGACTAAGGGTTGTGGCAGCAGAACCGACAGCGGGATCGACAGCACGCAGAGAGGGACCGGGC
* * * *
10906983 TGATCCTCGACTTGCGCATTATGCCTCTCCGATCGGTTGAGCCCCCGCACGCTCATTTCATGGGT
191 TGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCATGGGT
* * * * * * **
10907048 TGACTTGGGTAGATGAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCTTAGTCTAAGATCG
256 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
** * * * * * * *
10907113 GTCCAGACCAAGGGTTGCGGGAGTAGGATCGGCAGCACGTAAG-AGGCACCGGGCTGATGCTCGG
321 AACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACG-AAGAAGGGA-CGGGCCGATCCCCGG
** * * * * * *
10907177 CTTGTGCATTCTGCCTCTCTGACTGGCTAAGCGCCCCCACGCCCGTTTTGTGGGTTGGCTTAGGC
384 CTTACGCATTCTGCCTCTCTGACCGGTTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGC
** * ** *
10907242 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGATCGAGGGTTGTGGCAGTAGGACCGATAGC
449 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGACAGC
* * * * * * * *
10907307 ATGCAGAGGGGGACCAGACCGATCCCCGTCTTGCGTATGATGCCTCTTCGGCTGGCTCAACTCCC
514 ATGCAAAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCC
* * * *
10907372 GCACACTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCTGTCTAAGATC-GAGCCAG
579 GCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCAG
* * * * * * * * * *
10907436 ACCAAGGGTTCCGATAGTAGGATTGACAGCATGCAGGGGGGACCAGGTTGATCCCCGACTTGTGC
643 ACCGAGGGTTGCG-GAGCAAGATCGACAGCACGTAGGGGGGACCAGGTCGATCCCCGACTTGCGC
* * *
10907501 ATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTTGCTTAGGCATACAGA
707 ATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGA
** * *
10907566 GTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTG
772 GTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTA
* * * ** * *
10907631 TGACGGTAGGGCCAGCAGTAGGATAGGC
837 AG-CAGTAGGACCAGCAACAGGATCGAC
* * * * * * *
10907659 AGCAT-CCAGGAGGGACCAGGCC-AGTCCCTAGCTTATGTATTCTACCTCTTTGGCTGGCTGAGC
1 AGCATGCAAGG-GGGACCGGGCCGA-TCCCGA-CTTGTGCATTCTACCTCTCTGTC-GGCTGAGC
* * ** * ** * *
10907722 ACCCGCATGCAAGTTTCATGGGTTGGCTTAGGCATACGAAGGCTT-AGGGGACTATTGTATGAAT
62 GCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGAA-G-TTCA---TTCCA-TGTAT-AAG
* * ** ** ** ** * * * * *
10907786 TTACAAGCCATAAAAATGGCAT-TGGCATAGCAGAAATATGA-AGATGTGCTTGA-A-C-C-CAC
120 CTCCAA-CCGGACTAA-GGGTTGTGGC--AGCAG-AA-CCGACAG-CGGGATCGACAGCACGCAG
** ** * ** ** * * * * *
10907845 CTA-CCACCCGTTTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCGTCCACACGC
178 AGAGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGC
* * *
10907909 TCATTTCGTGGGTTGACTTAGGCATACGGAGCTCATCCCCAGTCTAAGCATATGGAGTTCATTCC
243 TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCC
* * * ** *
10907974 CAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCAAGATCGATAGCACGAAGAGGGGAACGG
308 CAGTCTAAGATCGAACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGAAGAAGGG-ACGG
* * * * *
10908039 GCCGATCCCCGGCTTACGCTTTCTGCCTCTCCGACTGGTTGAGCACCTC-CATGCCCATTTCGTG
372 GCCGATCCCCGGCTTACGCATTCTGCCTCTCTGACCGGTTGAGCACC-CGCACGCCCGTTTCGTG
* * *
10908103 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGTCCCAGCCAGATCGAGGGTTGTGGCAA
436 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAG
* * *
10908168 CGGGACCGACAGCGTGCAAAGGGGGACC-GAGCCGATCCCTAGG-TTGCGCATTATGCCTCTCCG
501 CGGGACCGACAGCATGCAAAGGGGGACCAG-GCCGATCCC-CGGCTTGCGCATTATGCCTCTTCG
* * *
10908231 GCCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
564 GCCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTC
** * * * * * *
10908296 TAAGATCAGACTGGACCGAGGGTTGTGGCG-ATAGGATCAACAGCACGCAAGGTGGG-CCGGGTC
629 TAAGATCAGACCAGACCGAGGGTTGCGGAGCA-A-GATCGACAGCACG-TAGGGGGGACCAGGTC
* * * *
10908359 GAACCCCGACTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTT
691 GATCCCCGACTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTT
* *
10908424 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATGCAGAGTTCATTCCCAGTCTAAGATCTG
756 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG
* * *
10908489 ACCGGACCGAGGGTTAAAGCAGTAGGACTAGCAACAGGATCGAC
821 ATCAGACCGAGGGTT-AAGCAGTAGGACCAGCAACAGGATCGAC
* * * * *
10908533 AGCATGTAAGGGGGATCGGGCCGATCTCCGACTTGCGCATTCTACCTCTCCTGTCGGTTGAACGC
1 AGCATGCAAGGGGGACCGGGCCGATC-CCGACTTGTGCATTCTACCTCT-CTGTCGGCTGAGCGC
** * * * * * * *
10908598 TTGCACGCTTGTTTCGTCGGTTGGCTAAGGCATATGGAGTTCATTCCATGTCTAATCTCCAATCG
64 CCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTATAAGCTCCAACCG
* * * * * *
10908663 GACCAAGGGTTGTGGCAGCAGGACCGGCAGTGGGATCGACAGCACGCAGAGAGGGATCGAGCTGA
129 GACTAAGGGTTGTGGCAGCAGAACCGACAGCGGGATCGACAGCACGCAGAGAGGGACCGGGCTGA
* ** * * * * *
10908728 TCCCCGGCTTGCGTATTATGCCTCTCCGGCCGGTTGAGCACCCGTACGCTCGTTTCGTGGGTTGA
194 TCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGA
* * * * *
10908793 CTTAAGCATACGGAGTTCATCCCTAGTCCAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAAT
259 CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAAC
* * * * * * ** *
10908858 TGGATCGAGGGTTACGGCAGCAGGATCGGCAGTA-TACAGGGGGGATCAGGCCGATCCCCGGCTT
324 CGGACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGA-AGAAGGGA-CGGGCCGATCCCCGGCTT
* *
10908922 ACGCATTCTACCTCTCTGGCCGGTTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
387 ACGCATTCTGCCTCTCTGACCGGTTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
*** *
10908987 GGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCGAGGGTTGTGGCAGCGAGG-CCGGCAGCAT
452 GGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCG-GGACCGACAGCAT
* * * * * * *
10909051 GCAGAGGTGGACCGGGTCGATCCCCGGCTTGCGCATTATACCTCTTCGGTCGGCTCAGTGCCCGC
516 GCAAAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGC
* * * * **
10909116 ATGCTCGTTTCATGGGTTGACTTATTCATACGGAGTTCATTCTCATTCTAAGATCAGACTGGACC
581 ACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
* * *
10909181 GAGGGTTGTGGCAGCAAGATCGACAAG-ACGTAGGGGGGACCGGGTCGATCCCCGGCTTGCGCAT
646 GAGGGTTGCGG-AGCAAGATCGAC-AGCACGTAGGGGGGACCAGGTCGATCCCCGACTTGCGCAT
* * * * *
10909245 TCTGCCTCTCTGACCGGCTGAGCGACCGCACGCTCATTTCATGTGTTGGCTTAGGCATACGGAGT
709 TCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGT
10909310 TCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
774 TCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
10909354 TTTGAGCCAC
Statistics
Matches: 2067, Mismatches: 428, Indels: 138
0.79 0.16 0.05
Matches are distributed among these distances:
863 7 0.00
864 4 0.00
865 6 0.00
866 4 0.00
867 29 0.01
868 611 0.30
869 707 0.34
870 19 0.01
872 5 0.00
873 12 0.01
874 613 0.30
875 30 0.01
876 4 0.00
877 6 0.00
878 5 0.00
879 5 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (863 bp):
AGCATGCAAGGGGGACCGGGCCGATCCCGACTTGTGCATTCTACCTCTCTGTCGGCTGAGCGCCC
GCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTATAAGCTCCAACCGGA
CTAAGGGTTGTGGCAGCAGAACCGACAGCGGGATCGACAGCACGCAGAGAGGGACCGGGCTGATC
CCCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACT
TAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCG
GACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGAAGAAGGGACGGGCCGATCCCCGGCTTACGC
ATTCTGCCTCTCTGACCGGTTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGA
GTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCATGCAAA
GGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCT
CGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
TTGCGGAGCAAGATCGACAGCACGTAGGGGGGACCAGGTCGATCCCCGACTTGCGCATTCTACCT
CTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
ATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTAAGCAGTAGG
ACCAGCAACAGGATCGAC
Found at i:10909151 original size:159 final size:159
Alignment explanation
Indices: 10908894--10909327 Score: 509
Period size: 159 Copynumber: 2.7 Consensus size: 159
10908884 CGGCAGTATA
* * * * * *
10908894 CAGGGGGGATCAGGCCGATCCCCGGCTTACGCATTCTACCTCTCTGGCCGGTTGAGCACCCGCAC
1 CAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCTGGCCGGCTGAGCGCCCGCAC
* * * * *
10908959 GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TTGGACCG
66 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACTGGACCG
* * * *
10909023 AGGGTTGTGGCAGCGAGGCCGGC-AGCATG
131 AGGGTTGTGGCAGCAAGACCGACAAG-ACG
* * * * *
10909052 CAGAGGTGGACCGGGTCGATCCCCGGCTTGCGCATTATACCTCT-TCGGTCGGCTCAGTGCCCGC
1 CAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCT-GGCCGGCTGAGCGCCCGC
* * ** *
10909116 ATGCTCGTTTCATGGGTTGACTTATTCATACGGAGTTCATTCTCAT-TCTAAG-ATCAGACTGGA
64 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCACCAGACTGGA
*
10909179 CCGAGGGTTGTGGCAGCAAGATCGACAAGACG
128 CCGAGGGTTGTGGCAGCAAGACCGACAAGACG
* * * *
10909211 TAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGACCGCAC
1 CAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCTGGCCGGCTGAGCGCCCGCAC
* *
10909276 GCTCATTTCATGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
10909328 TACAGAGTTC
Statistics
Matches: 227, Mismatches: 41, Indels: 15
0.80 0.14 0.05
Matches are distributed among these distances:
157 3 0.01
158 99 0.44
159 120 0.53
160 5 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
CAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACTGGACCG
AGGGTTGTGGCAGCAAGACCGACAAGACG
Found at i:10909285 original size:158 final size:157
Alignment explanation
Indices: 10908824--10909325 Score: 516
Period size: 158 Copynumber: 3.2 Consensus size: 157
10908814 CCTAGTCCAA
* * ** *
10908824 GCATATGGAGTTCATTCCCA-GTCTAAGATC-GAATTGGATCGAGGGTTACGGCAGCAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAG-ATTGGACCGAGGGTTGTGGCAGCAAGATCGG
* * * * * *
10908887 CAGTATAC-AGGGGGGATCAGGCCGATCCCCGGCTTACGCATTCTACCTCTCTGGCCGGTTGAGC
64 CA--AGACGAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCTGGCCGGCTGAGC
* *
10908951 -ACCCGCACGCCCGTTTCGTGGGTTGGCTTAG
127 GA-CCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * **
10908982 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TTGGACCGAGGGTTGTGGCAGCGAGGCCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATTGGACCGAGGGTTGTGGCAGCAAGATCGGC
* * * * *
10909046 -AGCATGCAGAGGTGGACCGGGTCGATCCCCGGCTTGCGCATTATACCTCT-TCGGTCGGCTCAG
65 AAG-ACG-AG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCT-GGCCGGCTGAG
* * * * *
10909109 TGCCCGCATGCTCGTTTCATGGGTTGACTTAT
126 CGACCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
10909141 TCATACGGAGTTCATTCTCAT-TCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAAGATCGAC
1 GCATACGGAGTTCATTC-CATGTCTAAGATCAGATTGGACCGAGGGTTGTGGCAGCAAGATCGGC
* *
10909205 AAGACGTAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGA
65 AAGACG-AGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCTGGCCGGCTGAGCGA
* *
10909270 CCGCACGCTCATTTCATGTGTTGGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
10909299 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
10909326 CATACAGAGT
Statistics
Matches: 277, Mismatches: 53, Indels: 28
0.77 0.15 0.08
Matches are distributed among these distances:
155 1 0.00
156 1 0.00
157 6 0.02
158 144 0.52
159 119 0.43
160 6 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATTGGACCGAGGGTTGTGGCAGCAAGATCGGCA
AGACGAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCTGGCCGGCTGAGCGACC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:10909329 original size:26 final size:26
Alignment explanation
Indices: 10909299--10909351 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10909289 GTTGGCTTAG
*
10909299 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
10909325 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10909351 G
1 G
10909352 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10910038 original size:26 final size:26
Alignment explanation
Indices: 10910002--10910054 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10909992 GTTGACTTAG
*
10910002 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCACAGTCTAA
*
10910028 GCATATGGAGTTCATTCACAGTCTAA
1 GCATATGGAGTTCATCCACAGTCTAA
10910054 G
1 G
10910055 ATTGAACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCACAGTCTAA
Found at i:10910785 original size:26 final size:26
Alignment explanation
Indices: 10910746--10910801 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
10910736 TGGGTTGACT
*
10910746 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
*
10910772 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
10910798 TAAG
1 TAAG
10910802 ATCGGATTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:10911078 original size:159 final size:158
Alignment explanation
Indices: 10910848--10911313 Score: 411
Period size: 157 Copynumber: 2.9 Consensus size: 158
10910838 CCACACGAAA
* * * * * * * * * * * *
10910848 GGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCC
1 GGGGGACCAGGCCAATCCCCGACTTGCACATTATGACTCTCCTGACGGCTCAGCGCCCGCACACT
* ** * * *
10910913 CGTTTCATAAGTTGGTTTAGGGATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
66 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
** *
10910978 TTGTGGCAGCGGGAACGACAGCACGTAG
131 TTGTGGCAGCAAGAACGACAACACGTAG
* ** * *
10911006 AGGGGGATCAGGCCGGTCCCCGACTTGCACATTATTACTCT-CTGACTGGCTCAGTGCCCGCACA
1 -GGGGGACCAGGCCAATCCCCGACTTGCACATTATGACTCTCCTGAC-GGCTCAGCGCCCGCACA
* ** * *
10911070 CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGATCGGACCG
64 CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCG
*
10911133 A-GGTTGTGGCAGCAAGATCGACAACACGTAG
127 AGGGTTGTGGCAGCAAGAACGACAACACGTAG
* * * * * * * *
10911164 GGGGGACCAGGCCAATTCCCGGCTTGCACATTCTGCCTCTCCTGTCGGTTGAGCGCCCGTACACT
1 GGGGGACCAGGCCAATCCCCGACTTGCACATTATGACTCTCCTGACGGCTCAGCGCCCGCACACT
* * * * * * * *
10911229 CGTTTCGTGGGATGGCTTAGTCATACGAAGCTCATTCTATGTCTAAGCCCCAGCCAGACCGAGGG
66 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
*
10911294 TTGTCGCAGC-AGAATCGACA
131 TTGTGGCAGCAAGAA-CGACA
10911314 GCGGGATCGA
Statistics
Matches: 241, Mismatches: 58, Indels: 17
0.76 0.18 0.05
Matches are distributed among these distances:
156 2 0.01
157 93 0.39
158 53 0.22
159 90 0.37
160 3 0.01
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
GGGGGACCAGGCCAATCCCCGACTTGCACATTATGACTCTCCTGACGGCTCAGCGCCCGCACACT
CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
TTGTGGCAGCAAGAACGACAACACGTAG
Found at i:10912237 original size:159 final size:160
Alignment explanation
Indices: 10912073--10912446 Score: 461
Period size: 159 Copynumber: 2.4 Consensus size: 160
10912063 CTAAGTGCCC
* * *
10912073 GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCGG
1 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGG
* * * *
10912137 ACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGG-GATCGGGCCGATCCCCGGCTTGC
66 ACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAG-GGGGCGACCGGGCCGATCCCCGACTTGC
10912201 GCATTATGCCTCTCTAG-CCGACTCAGCACCG
130 GCATTATGCCTCTC-AGACCGACTCAGCACCG
* * * * *
10912232 GCACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCG
1 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCG
* * *
10912295 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACATAGGGGGCGACCGGGTCGATCCCCGACTTGT
65 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGGGGGCGACCGGGCCGATCCCCGACTTGC
* * * * * * *
10912360 GCATTCTGCCTCTCCGATCGATTGAGCGCCT
130 GCATTATGCCTCTCAGACCGACTCAGCACCG
* * *
10912391 GCACACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTAATTCCATGTCTAAGCA
1 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
10912447 TACAGAGTTC
Statistics
Matches: 180, Mismatches: 29, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
158 10 0.06
159 166 0.92
160 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (160 bp):
GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGG
ACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGGGGGCGACCGGGCCGATCCCCGACTTGCG
CATTATGCCTCTCAGACCGACTCAGCACCG
Found at i:10912454 original size:26 final size:26
Alignment explanation
Indices: 10912418--10912470 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10912408 GTTGGCTTAG
10912418 GCATACAGAGTTAATT-CCATGTCTAA
1 GCATACAGAGTTAATTCCCA-GTCTAA
*
10912444 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
10912470 G
1 G
10912471 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:10913323 original size:158 final size:156
Alignment explanation
Indices: 10912880--10913326 Score: 441
Period size: 159 Copynumber: 2.8 Consensus size: 156
10912870 TGCGGTAGCT
* * *
10912880 GGATCGAC-GCATGAGGGGGGACCAGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGATCGGC
1 GGATCGACAGCATGAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGC
* * * * * *
10912944 TGAGCGCCCGCATACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCAAAGCC
66 TGAGCGCCCG-ATGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
* * *
10913009 TCAGTCAGACTGAGGGTTGTGGCAACA
130 TCAATCAGACCGAGGGATGTGGCAACA
* ** * * * * * * *
10913036 GGACCGACAGCACACAGAGGGGGATCGGGTCGATCCCCGACTTACGCATTATGCCTCTTCGGTCG
1 GGATCGACAGCA-TGAG-GGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCG
* * * * * *
10913101 GCTCAGCGCTCAGACGCTCGTTTCGTGGGTTGACTTATGCATATGGAGTTCATTCCCA-GACTAA
64 GCTGAGCGC-CCGATGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATT-CCATGTCTAA
**
10913165 G-ATCAAATTGGACCGAGGGATGTGGCAACA
127 GCATC-AATCAGACCGAGGGATGTGGCAACA
* * * * *
10913195 GGATCGACAGCATGTAGGGGGGAGCTGGCCGATCCTCGGCTTGCGCATTCTACCTCTCCGGCCGG
1 GGATCGACAGCATG-AGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGG
* * ** *
10913260 TTGAGCGCCCGTATGCTCGTTTCATCAGTTGGCTTAGGCATATGGAGTTTATTCCATGTCTAAGC
65 CTGAGCGCCCG-ATGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
10913325 AT
129 AT
10913327 ACGGAGCTCA
Statistics
Matches: 227, Mismatches: 54, Indels: 17
0.76 0.18 0.06
Matches are distributed among these distances:
156 7 0.03
157 8 0.04
158 88 0.39
159 119 0.52
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
GGATCGACAGCATGAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGC
TGAGCGCCCGATGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCAT
CAATCAGACCGAGGGATGTGGCAACA
Found at i:10914067 original size:26 final size:26
Alignment explanation
Indices: 10914030--10914082 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10914020 GTTGACTTAG
10914030 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* * *
10914056 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
10914082 G
1 G
10914083 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:10914730 original size:26 final size:26
Alignment explanation
Indices: 10914701--10914753 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10914691 GTTGGCTTGG
10914701 GCATACCGAGTTCATT-CCATGTCTAA
1 GCATACCGAGTTCATTCCCA-GTCTAA
* *
10914727 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
10914753 G
1 G
10914754 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:10914961 original size:25 final size:26
Alignment explanation
Indices: 10914910--10914961 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10914900 GTTGACTTAG
10914910 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
10914936 GCATACGGAGTTTATT-CCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10914961 G
1 G
10914962 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10915268 original size:160 final size:158
Alignment explanation
Indices: 10915075--10915438 Score: 360
Period size: 158 Copynumber: 2.3 Consensus size: 158
10915065 TGCACGCCTG
** * * * * *
10915075 TTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCC-AATCGAGGGT
1 TTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGT
* **
10915139 T-G-TGGCAGCGAGTTCGACAGCACGCAGAGGGGGGACCAGGTTGATCACTGGCTTGCGCATTAT
66 TAGATAGCAG-GA-TT-GACAGCACGCA-A-GGGGGACCAGGCCGATCACTGGCTTGCGCATTAT
*
10915202 GCCTCTCCGATCGGCTCAGTGCCCGAACACTCA
126 GCCTCTCCGATCGGCTAAGTGCCCGAACACTCA
** * * *
10915235 TTTTGTTGGTTAACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGG
1 TTTCATGGGTTAACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGAACCGAGGG
* * * * * * *
10915298 TTACGATAGTAGGATTGACAGCACGCAAGGGGGATCGGGCCGGTCCCTGGCTTGTGCATTCTGCC
65 TTA-GATAGCAGGATTGACAGCACGCAAGGGGGACCAGGCCGATCACTGGCTTGCGCATTATGCC
* * * *
10915363 TCTTCGGTCGGCTAAGTGCCCGCACGCTCA
129 TCTCCGATCGGCTAAGTGCCCGAACACTCA
** *
10915393 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 TTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
10915439 GTATGGAGTT
Statistics
Matches: 164, Mismatches: 33, Indels: 15
0.77 0.16 0.07
Matches are distributed among these distances:
157 3 0.02
158 89 0.54
159 6 0.04
160 54 0.33
161 5 0.03
162 3 0.02
163 4 0.02
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (158 bp):
TTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGT
TAGATAGCAGGATTGACAGCACGCAAGGGGGACCAGGCCGATCACTGGCTTGCGCATTATGCCTC
TCCGATCGGCTAAGTGCCCGAACACTCA
Found at i:10915651 original size:26 final size:26
Alignment explanation
Indices: 10915621--10915672 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
10915611 GTTGACTTAG
10915621 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
10915647 GCATAGGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
10915673 CTTCGAATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10915918 original size:26 final size:26
Alignment explanation
Indices: 10915879--10915931 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10915869 GTTGGCTTAG
*
10915879 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAATTCATTCCCA-GTCTAA
10915905 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
10915931 G
1 G
10915932 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:10916566 original size:160 final size:158
Alignment explanation
Indices: 10916235--10916762 Score: 373
Period size: 158 Copynumber: 3.3 Consensus size: 158
10916225 GAGCATTTGC
* * * * * * * * * * ** *
10916235 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCTTTCCCAGTCCACGATCGGACCGGACT
1 ACGCTCATTTCGTGGGTCGACTTAGGCATACAGAGTTCATTCCAAGTCTAAGACCAGACTAGACC
* * * * * * * * * *
10916300 GAGGGTTGCGACAGGAGGATCGACAGCACGCAGGGGGGACC-AGGCCGATCCCTGACTTGCACAT
66 GAGGGTTGCGCCAGCAAGACCGACAGCACACAGGGCGGACCGA-GTCGATCCCCGGCTTGCGCAT
* **** * * *
10916364 TTTGCCTCTCCGGTTGGCTGAGCGCCCGC
130 TATGCCTCTCCAACCGGCTCAGCACCCGA
* * ** * *
10916393 ACGC-CTGTTTCGTGGGTCCG-CTTAGGTATAGGGAGTTCATTCCAATGTCTAAGCCCCAGTC-A
1 ACGCTC-ATTTCGTGGGT-CGACTTAGGCATACAGAGTTCATTCCAA-GTCTAAG-ACCAGACTA
* * *** * * *
10916455 GACCGAGGGTTGTGGCAGTGGGACCGATAGCACGCAGAGG-GGTACCGGGTCGATCCCCGGCTTG
62 GACCGAGGGTTGCGCCAGCAAGACCGACAGCACACAG-GGCGG-ACCGAGTCGATCCCCGGCTTG
10916519 CGCATTATGCCTCTCCAACCGGCTCAGCACCCGA
125 CGCATTATGCCTCTCCAACCGGCTCAGCACCCGA
* * *
10916553 ACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACTAGACC
1 ACGCTCATTTCGTGGGTCGACTTAGGCATACAGAGTTCATTCCAAGTCTAAGACCAGACTAGACC
* * * *
10916618 GAGGGTTGCGCCAGCAAGATCGACGGGACACAGGGCGGACCGAGTCGGTCCCCGGCTTGCGCATT
66 GAGGGTTGCGCCAGCAAGACCGACAGCACACAGGGCGGACCGAGTCGATCCCCGGCTTGCGCATT
* * * * * *
10916683 ATGCCTCTCCGACCGGTTGATCGCCCGT
131 ATGCCTCTCCAACCGGCTCAGCACCCGA
* * * * * * *
10916711 AGGCTCGTCTCGCGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
1 ACGCTCATTTCGTGGGTCGACTTAGGCATACAGAGTTCATTCCAAGTCTAAG
10916763 CATACGGAGT
Statistics
Matches: 292, Mismatches: 67, Indels: 22
0.77 0.18 0.06
Matches are distributed among these distances:
157 1 0.00
158 133 0.46
159 76 0.26
160 81 0.28
161 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
ACGCTCATTTCGTGGGTCGACTTAGGCATACAGAGTTCATTCCAAGTCTAAGACCAGACTAGACC
GAGGGTTGCGCCAGCAAGACCGACAGCACACAGGGCGGACCGAGTCGATCCCCGGCTTGCGCATT
ATGCCTCTCCAACCGGCTCAGCACCCGA
Found at i:10917296 original size:157 final size:159
Alignment explanation
Indices: 10917109--10917472 Score: 407
Period size: 157 Copynumber: 2.3 Consensus size: 159
10917099 ACCACACACC
* * * *
10917109 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGATCGAGG
1 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGATCGAGG
* * * ** *
10917173 GTTGTGGCAGCGGGACC-AGTAGCACGCAAAGGGAG-ATCGGCCG-TCCTTGGCTTACGCATTAT
66 GTTGCGGCAGCAGGACCGA-TAGCACGC-AAGGGAGAATAGGCCGATCCCCGACTTACGCATTAT
* *
10917235 GCCTCTCCGACCGGCTCACCTCCCGCACGCT
129 GCCTCTCCGACCGACTCACCGCCCGCACGCT
* * *
10917266 CATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGACCGGATCGAG
1 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGATCGAG
* * * *
10917329 GGTTGCGGCAGCAGGATCGATAGCACGCAGGGGGGAATAGGCCGATCCCCGACTTACGCATTCTG
65 GGTTGCGGCAGCAGGACCGATAGCACGCAAGGGAGAATAGGCCGATCCCCGACTTACGCATTATG
* * **
10917394 CCTCTCCGACCGACTGAGCGCTTGCACGCT
130 CCTCTCCGACCGACTCACCGCCCGCACGCT
** * * *
10917424 TGTTTCATGGGTTGCCTTAGGCATACGGAGTTCAATCCATGTCTAAGCA
1 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
10917473 TACGGAGTTC
Statistics
Matches: 171, Mismatches: 29, Indels: 12
0.81 0.14 0.06
Matches are distributed among these distances:
156 7 0.04
157 82 0.48
158 81 0.47
159 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGATCGAGG
GTTGCGGCAGCAGGACCGATAGCACGCAAGGGAGAATAGGCCGATCCCCGACTTACGCATTATGC
CTCTCCGACCGACTCACCGCCCGCACGCT
Found at i:10917452 original size:158 final size:156
Alignment explanation
Indices: 10916979--10917470 Score: 447
Period size: 158 Copynumber: 3.1 Consensus size: 156
10916969 AAGCATATGA
* * * * **
10916979 AGTTCATTCC-TAGTCTAAGATCGGATCGGACCGATGGTTGCAGCAGCAGGATCGGCAGCACGCA
1 AGTTCATTCCAT-GTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGATAGCACGCA
* * * ** * * * * *
10917043 TGGGGAACCAGGTCGATCCCC-AGCTTGTGCATTTTGCCTCTCCGATCGGTTGAGCGACCACACA
65 AGGGGAA-TAGGCCGATCCCCGA-CTTACGCATTATGCCTCTCCGACCGGCTGAGCG-CCGCACG
* * *
10917107 CCCATTTCGTGGGTTGGCTTAGGCATAGGG
127 CTCATTTCGTGGGTTGACTTAGGCATACGG
* ** * * * *
10917137 AGTTCATTCCATGTCTAAG-CCCCAGCTGGATCGAGGGTTGTGGCAGCGGGA-CCAGTAGCACGC
1 AGTTCATTCCATGTCTAAGATCGGA-CCGGATCGAGGGTTGCGGCAGCAGGATCGA-TAGCACGC
* * ** * * * *
10917200 AAAGGGAGATCGGCCG-TCCTTGGCTTACGCATTATGCCTCTCCGACCGGCTCACCTCCCGCACG
64 AAGGGGA-ATAGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTGAGC-GCCGCACG
*
10917264 CTCATTTTGTGGGTTGACTTAGGCATACGG
127 CTCATTTCGTGGGTTGACTTAGGCATACGG
10917294 AGTTCATTCCCA-GTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGATAGCACGCA
1 AGTTCATT-CCATGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGATAGCACGCA
* * * *
10917358 GGGGGGAATAGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGACTGAGCGCTTGCACGC
65 -AGGGGAATAGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTGAGCGC-CGCACGC
** * *
10917423 TTGTTTCATGGGTTGCCTTAGGCATACGG
128 TCATTTCGTGGGTTGACTTAGGCATACGG
*
10917452 AGTTCAATCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
10917471 CATACGGAGT
Statistics
Matches: 261, Mismatches: 60, Indels: 26
0.75 0.17 0.07
Matches are distributed among these distances:
157 120 0.46
158 139 0.53
159 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (156 bp):
AGTTCATTCCATGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAA
GGGGAATAGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTGAGCGCCGCACGCTCA
TTTCGTGGGTTGACTTAGGCATACGG
Found at i:10917473 original size:26 final size:26
Alignment explanation
Indices: 10917444--10917496 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10917434 GTTGCCTTAG
10917444 GCATACGGAGTTCAAT-CCATGTCTAA
1 GCATACGGAGTTCAATCCCA-GTCTAA
*
10917470 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
10917496 G
1 G
10917497 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:10917828 original size:26 final size:26
Alignment explanation
Indices: 10917799--10917851 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
10917789 GTTAGCTTAG
* *
10917799 GCATACGGAGTTGATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
10917825 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10917851 G
1 G
10917852 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10918489 original size:26 final size:26
Alignment explanation
Indices: 10918459--10918511 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10918449 GTTGACTTAG
10918459 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
10918485 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10918511 G
1 G
10918512 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10918995 original size:26 final size:26
Alignment explanation
Indices: 10918959--10919011 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10918949 GTTGGCTTAG
10918959 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
10918985 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10919011 G
1 G
10919012 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10919051 original size:26 final size:26
Alignment explanation
Indices: 10919015--10919072 Score: 116
Period size: 26 Copynumber: 2.2 Consensus size: 26
10919005 GTCTAAGATC
10919015 GGACCAAACTGAGGGTTGCGGTAGCA
1 GGACCAAACTGAGGGTTGCGGTAGCA
10919041 GGACCAAACTGAGGGTTGCGGTAGCA
1 GGACCAAACTGAGGGTTGCGGTAGCA
10919067 GGACCA
1 GGACCA
10919073 GCGACAGGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.28, C:0.21, G:0.38, T:0.14
Consensus pattern (26 bp):
GGACCAAACTGAGGGTTGCGGTAGCA
Found at i:10919210 original size:26 final size:27
Alignment explanation
Indices: 10919181--10919234 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
10919171 GTTGACTTAG
*
10919181 GCATACGGAGTTCA-CCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCCAGTCTAA
*
10919207 GCATACGAAGTTCATTCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCCAGTCTAA
10919234 G
1 G
10919235 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 13 0.52
27 12 0.48
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (27 bp):
GCATACGAAGTTCATCCCCCAGTCTAA
Found at i:10920078 original size:26 final size:26
Alignment explanation
Indices: 10920048--10920100 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10920038 GTTGGCTTAG
*
10920048 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
10920074 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10920100 G
1 G
10920101 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10920280 original size:26 final size:26
Alignment explanation
Indices: 10920244--10920296 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10920234 GTCGACTTAG
*
10920244 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
*
10920270 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
10920296 G
1 G
10920297 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAGTCTAA
Found at i:10920289 original size:196 final size:196
Alignment explanation
Indices: 10919955--10920326 Score: 523
Period size: 196 Copynumber: 1.9 Consensus size: 196
10919945 CAAATCGATA
* * * *
10919955 GCACGTAGGGGGGACCAGGCCGGTCCCCAGCTTGCGCATTCTGCCTCTTCGGTCGACTGAACACC
1 GCACGTAAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGACTGAACACC
* * *
10920020 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGT
66 CGCACGCTCGTTTCATGGGTCGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACAGAGT
* *
10920085 TCATTCCCAGTCTAAGATCGGACCAGATCGAGGCTTGCGACAGCAGCACGAGCAGCAGGATCGTC
131 TCATTCCCAGTCTAAGATCGAACCAGACCGAGGCTTGCGACAGCAGCACGAGCAGCAGGATCGTC
10920150 T
196 T
* * * * * * *
10920151 GCACGTAAGGGGGACCGGGTCGATCCCCGGCTTGCGTATTTTGCCTCTCCGATCGGCTTAAC-CC
1 GCACGTAAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGACTGAACACC
* *
10920215 TCGCACGCTTGTTTCGTGGGTCGACTTAGGCATACGGAGTTCATACCCA-GTCTAAGCATACAGA
66 -CGCACGCTCGTTTCATGGGTCGACTTAGGCATACGGAGTTCAT-CCCATGTCTAAGCATACAGA
* * *
10920279 GTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGCGACAGCAG
129 GTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGCTTGCGACAGCAG
10920327 GATAGGCAGC
Statistics
Matches: 153, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
195 2 0.01
196 148 0.97
197 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (196 bp):
GCACGTAAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGACTGAACACC
CGCACGCTCGTTTCATGGGTCGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACAGAGT
TCATTCCCAGTCTAAGATCGAACCAGACCGAGGCTTGCGACAGCAGCACGAGCAGCAGGATCGTC
T
Found at i:10920402 original size:26 final size:26
Alignment explanation
Indices: 10920366--10920418 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10920356 GATGATTTAG
10920366 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
10920392 GCATACGGAGTTCATTCCTAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10920418 G
1 G
10920419 ATTGGGTTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10920701 original size:159 final size:159
Alignment explanation
Indices: 10920433--10921064 Score: 400
Period size: 159 Copynumber: 3.9 Consensus size: 159
10920423 GGTTGGACTG
* * * * * ** ** *
10920433 AGGGTTGCAGCAGTAGGATCGACAGCCCGCAGGGGGGACCGGGCCGATCCCC-GACTTACGCATT
1 AGGGTTGCGGCAGCAAGACCGACAGCACGCAGGGGGGACCGAACCGATCCCCAG-CTGGCACATT
* * * * * *
10920497 CTGCCTCTCCAACCGG-CTGAGCGCCCGCACGC-C-TGTTCCGTGGGTTGGCTTAGGCATAGGGA
65 ATGCCTCTCCGAGCGGACTCAACGCCCGCACGCTCGT-TTCC-TGGGTTGGCTTAGGCATACGGA
* * * *
10920559 GTTTATTCCATGTCTAAGCCCCAG-TCGAATCG
128 GTTCATTCCATGTCTAAG-ACCAGATCGAACCA
* ** ** *
10920591 AGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTGGCACATT
1 AGGGTTGCGGCAGCAAGACCGACAGCACGCAG-GGGGGACCGAACCGATCCCCAGCTGGCACATT
* * * * * * *
10920656 ATGCCTCTCCG-GCTGACTCAATGTCCGTACGCTCGTTTCCTGGGTTGACTTAGTCATACGAAGT
65 ATGCCTCTCCGAGCGGACTCAACGCCCGCACGCTCGTTTCCTGGGTTGGCTTAGGCATACGGAGT
* *
10920720 TCATTCACA-GTCTAAGATCAGATCGGACCA
130 TCATTC-CATGTCTAAGACCAGATCGAACCA
* * * * * *
10920750 AGGGTTGCGGTAGCAAGATCGACAGCACGCAGGGGGGACCGAACCGGTCCCCAGCTTGCGCATTC
1 AGGGTTGCGGCAGCAAGACCGACAGCACGCAGGGGGGACCGAACCGATCCCCAGCTGGCACATTA
* * * * * *
10920815 TGCCTCTTCGATCGGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
66 TGCCTCTCCGAGCGGACTCAACGCCCGCACGCTCGTTTCCTGGGTTGGCTTAGGCATACGGAGTT
*** * * **
10920880 CATTCC-TAGTCTAAGATTGGACCGGACTG
131 CATTCCAT-GTCTAAGACCAGATCGAACCA
* * *** *
10920909 AGGGTTACGGTAGCGGGACCAGCATCAAGATCGACAGCACGCAAGGGGGACCGGGTCGATCCCCG
1 AGGG-T----T-GC-GG--CAG---CAAGACCGACAGCACGCAGGGGGGACCGAACCGATCCCCA
* * * * * * * * *
10920974 GATTGCACATTCTGCCTTTCCG-GCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAG
54 GCTGGCACATTATGCCTCTCCGAGCGGACTCAACGCCCGCACGCTCGTTTCCTGGGTTGGCTTAG
*
10921038 GCATACAGAGTTCATTCCATGTCTAAG
119 GCATACGGAGTTCATTCCATGTCTAAG
10921065 CATATGGAGT
Statistics
Matches: 376, Mismatches: 75, Indels: 34
0.78 0.15 0.07
Matches are distributed among these distances:
158 67 0.18
159 178 0.47
160 9 0.02
161 1 0.00
164 1 0.00
165 2 0.01
166 2 0.01
168 2 0.01
170 61 0.16
171 53 0.14
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (159 bp):
AGGGTTGCGGCAGCAAGACCGACAGCACGCAGGGGGGACCGAACCGATCCCCAGCTGGCACATTA
TGCCTCTCCGAGCGGACTCAACGCCCGCACGCTCGTTTCCTGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGACCAGATCGAACCA
Found at i:10921068 original size:26 final size:26
Alignment explanation
Indices: 10921038--10921090 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10921028 GTTGGCTTAG
10921038 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
10921064 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10921090 G
1 G
10921091 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10921788 original size:26 final size:26
Alignment explanation
Indices: 10921758--10921810 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10921748 GTTGACTTAG
10921758 GCATACAGAGTTC-ATCCCCAGCCTAA
1 GCATACAGAGTTCAAT-CCCAGCCTAA
*
10921784 GCATACAGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGCCTAA
10921810 G
1 G
10921811 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGCCTAA
Found at i:10922130 original size:26 final size:26
Alignment explanation
Indices: 10922100--10922150 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
10922090 GTTGACTTAG
*
10922100 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
10922126 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATCCCCAATCTA
10922151 TGATCGGATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:10928277 original size:26 final size:26
Alignment explanation
Indices: 10928226--10928278 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10928216 GTTGACATAG
*
10928226 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAGCCTAA
* *
10928252 GCATACGGAGTTCATTCCTAGCCTAA
1 GCATACGGAGTTCATACCCAGCCTAA
10928278 G
1 G
10928279 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGCCTAA
Found at i:10930282 original size:327 final size:317
Alignment explanation
Indices: 10929693--10930306 Score: 693
Period size: 327 Copynumber: 1.9 Consensus size: 317
10929683 CCAACAGTAG
* * * * * *
10929693 GATCAACAGCACGCAGGGGGGACTGGGTCGATCCCCGGCTTGCGTATTCTGCCTGTCTGGCCAAC
1 GATCAACAACACGCAGGGGGGACCGGGTCGATCCCCAGCTTGCGTATTCTACCTGTCCGACCAAC
* * * ** *
10929758 TGAGTGCCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATTCGTAGTTCATTCCATGTCTAAGCC
66 TGAGCGCCCGCACGCCTGTTTCATAGGTAAGCTTAGGCATACGTAGTTCATTCCATGTCTAAGCC
10929823 CTAGTCGGACCGAGGGTTGTGGTAGCGGGACCAGCAGCACGCAGAGGGGGACCGAGCCGATCCCC
131 CTAGTCGGACCGAGGGTTGTGGTAGCGGGACCAGCAGCACGCAGAGGGGGACCGAGCCGATCCCC
* ** * * *
10929888 GGCTTGCATATTATGGCTCTCCGACCGGCTCAGCACCCGAACGGCCATTTCGTGGGTTGACTTAG
196 GACTTGCATATTATACCTCTCCGACCGGCTCAACACCCGAACGGCCATTTCATGGGTTGAATTAG
*
10929953 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTATGGTAGCAA
261 GCATACGGAGTTCATCCCCAATCTAAGATCAGACCAGACTGAGGGTTATGGTAGCAA
* * * *
10930010 GATCGACAACACGTAGGGGGGACCGGG-CTGATCCCCAGCTTGC-TCATTCTACCTTTCCGACCG
1 GATCAACAACACGCAGGGGGGACCGGGTC-GATCCCCAGCTTGCGT-ATTCTACCTGTCCGACCA
*
10930073 ACTGAGCGCCCGCACGCTTGTTTCATAGGTAAGCTTAGGCATACG-AGTTCATTCCATGTCTAAG
64 ACTGAGCGCCCGCACGCCTGTTTCATAGGTAAGCTTAGGCATACGTAGTTCATTCCATGTCTAA-
* * *
10930137 GCCC-AGTCGGATCGAGGGTTGTGGTGTAGGACCGATAGCATGATCAGCAGCACGTAGAGGGGGA
128 GCCCTAGTCGGACCGAGGGTTGT-G-GTA-G--CG---G---GACCAGCAGCACGCAGAGGGGGA
* * * * * * * * *
10930201 TCGGGCTGATCCTCGACTTGC-TCATTGTACCTCTCCGGCCGGCTGAACGCCC-ACAC-GCTCGT
182 CCGAGCCGATCCCCGACTTGCAT-ATTATACCTCTCCGACCGGCTCAACACCCGA-ACGGC-CAT
*
10930263 TTCATGGGTTGAATTAGGCATACGGAGTTCATCCCCAGTCTAAG
244 TTCATGGGTTGAATTAGGCATACGGAGTTCATCCCCAATCTAAG
10930307 CATACGGAGT
Statistics
Matches: 243, Mismatches: 37, Indels: 24
0.80 0.12 0.08
Matches are distributed among these distances:
316 37 0.15
317 92 0.38
318 3 0.01
319 1 0.00
321 2 0.01
324 1 0.00
326 4 0.02
327 103 0.42
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (317 bp):
GATCAACAACACGCAGGGGGGACCGGGTCGATCCCCAGCTTGCGTATTCTACCTGTCCGACCAAC
TGAGCGCCCGCACGCCTGTTTCATAGGTAAGCTTAGGCATACGTAGTTCATTCCATGTCTAAGCC
CTAGTCGGACCGAGGGTTGTGGTAGCGGGACCAGCAGCACGCAGAGGGGGACCGAGCCGATCCCC
GACTTGCATATTATACCTCTCCGACCGGCTCAACACCCGAACGGCCATTTCATGGGTTGAATTAG
GCATACGGAGTTCATCCCCAATCTAAGATCAGACCAGACTGAGGGTTATGGTAGCAA
Found at i:10930310 original size:26 final size:26
Alignment explanation
Indices: 10930280--10930332 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10930270 GTTGAATTAG
10930280 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
10930306 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
10930332 G
1 G
10930333 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10930649 original size:26 final size:26
Alignment explanation
Indices: 10930620--10930672 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10930610 GTTGGCTTAG
10930620 GCATACGGAGTTCA-TCCCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
10930646 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10930672 G
1 G
10930673 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10930769 original size:13 final size:13
Alignment explanation
Indices: 10930751--10930776 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10930741 TGCGCATTCT
10930751 GCCTCCCCGACCG
1 GCCTCCCCGACCG
10930764 GCCTCCCCGACCG
1 GCCTCCCCGACCG
10930777 ACTGAGCACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.62, G:0.23, T:0.08
Consensus pattern (13 bp):
GCCTCCCCGACCG
Found at i:10930865 original size:25 final size:26
Alignment explanation
Indices: 10930815--10930866 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10930805 GTTGACTTAG
10930815 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
10930841 GCATACGGAGTTCAT-CCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
10930866 G
1 G
10930867 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 11 0.42
26 15 0.58
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:10931211 original size:159 final size:158
Alignment explanation
Indices: 10931055--10931341 Score: 344
Period size: 158 Copynumber: 1.8 Consensus size: 158
10931045 GTGGCAGCGG
* * * *
10931055 GATCGACAGCACATAGAGGGGGATCGAGCCGATCCCCGGCTTGCATATTATGCCTCTCC-AGTCG
1 GATCGACAGCACACAG-GGGGGATCGAGCCGATCCCCGGCTTGCACATTATGCCTCTCCGA-ACA
* *
10931119 GCTCAACGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCCA-GTCTAA
64 GCTCAACGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CCATGTCTAA
10931183 GATCGGACCGGACAGAGGGTTACAGCAGCAA
128 GATCGGACCGGACAGAGGGTTACAGCAGCAA
* ** * * * *
10931214 GATTGACAGCATGCAGGGGGGATCGAGTCGGTCCCCGGCTTGCACGTTCTGCCTCTCCGAACAGC
1 GATCGACAGCACACAGGGGGGATCGAGCCGATCCCCGGCTTGCACATTATGCCTCTCCGAACAGC
* * * * * ** *
10931279 TGAGCGCCTGCATGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
66 TCAACGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAG
10931342 CATACGGAGT
Statistics
Matches: 105, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
157 3 0.03
158 89 0.85
159 13 0.12
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (158 bp):
GATCGACAGCACACAGGGGGGATCGAGCCGATCCCCGGCTTGCACATTATGCCTCTCCGAACAGC
TCAACGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGAT
CGGACCGGACAGAGGGTTACAGCAGCAA
Found at i:10931345 original size:26 final size:26
Alignment explanation
Indices: 10931315--10931367 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10931305 GTTGGCTTAG
10931315 GCATACAGAGTTCATTCCAT-GTCTAA
1 GCATACAGAGTTCATT-CATAGTCTAA
*
10931341 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACAGAGTTCATTCATAGTCTAA
10931367 G
1 G
10931368 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCATAGTCTAA
Found at i:10931548 original size:26 final size:26
Alignment explanation
Indices: 10931512--10931564 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10931502 ATTGACTTAG
* *
10931512 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
10931538 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
10931564 G
1 G
10931565 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:10932161 original size:26 final size:26
Alignment explanation
Indices: 10932123--10932178 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
10932113 TGAGTTGACT
*
10932123 TAAGCATATGGAGTTCA-TCACCAGTC
1 TAAGCATACGGAGTTCATTC-CCAGTC
*
10932149 TAAGGATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
10932175 TAAG
1 TAAG
10932179 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:10932677 original size:26 final size:26
Alignment explanation
Indices: 10932626--10932678 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
10932616 GGTTGCTTAG
*
10932626 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
* *
10932652 GCATATGGAGTTCTTTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
10932678 G
1 G
10932679 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:10933875 original size:26 final size:26
Alignment explanation
Indices: 10933846--10933898 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10933836 GTTGACTTAG
* *
10933846 GCATACGTAGCTCATTTCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
10933872 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
10933898 G
1 G
10933899 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:10934077 original size:864 final size:857
Alignment explanation
Indices: 10931959--10934419 Score: 2497
Period size: 864 Copynumber: 2.9 Consensus size: 857
10931949 CCTCTCCGTC
* * * * *
10931959 GCATACAGAGTTC-TTCCATGT-TAA-CCCCAACCGAACCGAGGGTTGTGTC-GCAGGATTGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGA-TGGTA
* *
10932020 GCGAGATCGACAGCACGCAGAGGGGGACCGGGCTGAACCCTGGCTTGCACATTATGCCTCTCC-G
65 GCGAGATCGACAGCACG-AGA-GGGGACCGGGTTGATCCCTGGCTTGCACATTATGCCTCTCCGG
* * * * * * *
10932084 ACTGGCTGAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAAGCATATGGAGTTCATCACCAGTC
128 AC-AGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGCTCATCACCAGTC
* * * * *
10932149 TAAGGATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACAGAAGGTTGCGACAGTAAGATC
192 TAAGAATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGAC-GAGGGTTACGACAGCAGGATC
* * * *
10932213 GACAGCACATAGGGGGGATCGGGCCGATCCCCTGCTTCTGTATTCTTCCTCTCCAGCAT-GCTGA
255 GACAGCACACAGGGGGGATCGGGCCGAT-CCCTGCTTC-GCATTCTACCTCTCGA-C-TGGCTGA
* *
10932277 GCGCCCGCACGCCCGTTTTGTGGGTTGGCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
316 GCGCCCGCACGCCCGTTTCGTGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
* * * * *
10932342 GTCGGA-TCGAGGGTTGTGGCAGTGGGACTGGCAGCATGCAGAGGGGGACTGGGCTGATCCCCGG
381 GCCAGACT-GAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGGGGAC-GGGATGATCCCCGG
* * ** * *
10932406 CTTACGCATTATGTCTCTTAGGCTGACTCAG-TGCCCGAACGCTCGTTTCGTGGGTTGACTTAGG
444 CTTGCGCATTATGCCTC-TCCGCCGGCTCAGCT-CCCGAACGCTCGTTTCGTGGGTTGACTTAGG
* * * * * *
10932470 CATACAGAGTTCATTCCCAGTTTAAGATCAGACCGGACCAAGGGTTACAGTAGCAGGATCGACAA
507 CATACAGAGTTCATTCCCAGTCTAAGAT-AGGCCGGACCGAGGGTTGCGGTAGCAGGATCGACAG
** * * * * * * *
10932535 CATGC-AGGGGAGATC-GGCCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCTC
571 CACACAAGGGG-GAACTGG-CCGATCCCCGGCTTGTGCATTCTACCTCTCCGGCCGGTTG-TC-C
10932598 CCGCACGCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAG
632 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAG
* * * *
10932662 TTCTTTCCCAGCCTAAGATCAGACCGAACCGAGGGTTGTGGCACCAAGACCAGTAGCAGGATCGA
697 TTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCACCAAGACCAGCAGCAAGATCGA
* * * * * **
10932727 TAGCACGTAGGGGGGGATCGGGCCGATCCTCGGCTTACGCATTATGCCTCTCCGGTCGGCTCAGC
762 TAGCACGCAGGGGGGGACCAGGCCGATCCCCGGCTTACGCATTATGACTCTCCGACCGGCTCAGC
* *
10932792 GCTCGAATGCTCGTTTCATGGATTGACTTCA
827 GCTCGAACGCTCATTTCATGGATTGACTTCA
* ** * * *
10932823 GCATACGGAGTTCATTGTCA-GTCTAAG-ATCTGACCGGATCGAGGGTTGCGGCAGCAGGA---T
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCAGGATGGT
* * * * * * * * * *
10932883 --CGATAGC-ACA-CA-G-GAGGGGATCGGGTCGGTCCCCGGCTTACGCATTCA-GCCTTTCTGG
64 AGCGAGATCGACAGCACGAGAGGGGACCGGGTTGATCCCTGGCTTGCACATT-ATGCCTCTCCGG
* * * *
10932941 CCAGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGCTCAACCCCAGTCT
128 ACAGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGCTCATCACCAGTCT
* *
10933006 AAGAATACCGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGATAGCAGGATCGA
193 AAGAATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGA-CGAGGGTTACGACAGCAGGATCGA
* ** * ** * *
10933071 TAGCATGCAGGGGGGACCGGGCTAATCCCTAGCTTACGCATTCTGCCTCTCCGA-TCGGTTGAGC
257 CAGCACACAGGGGGGATCGGGCCGATCCCT-GCTT-CGCATTCTACCTCT-CGACT-GGCTGAGC
* * * ** *
10933135 ACCCGTACGTCCGTTTCGTGGGTTGGCATAGGTGTAGGGAGTTCATTCCATGTCAAAGCCCCAGC
318 GCCCGCACGCCCGTTTCGTGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* * *
10933200 CAGACTGAGGGTTGTGGCAACGGGACTGGCAGCACGCAGAGGGGGTCGGGTTGATCCCCGGCTTG
383 CAGACTGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGGGGACGGGATGATCCCCGGCTTG
* * * * * *
10933265 CGTATTATGCCTCTCCGATCGGCACAGCTCCCGCACGCCCGTTTCGTGGGTTGACTTCGGCATAC
448 CGCATTATGCCTCTCCG-CCGGCTCAGCTCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * * *
10933330 AGAGTTCATTCCCAATCTAAGATTGGCCTGAACTGAGGGTTGTGGCAGCAGGATCGACAGCACAC
512 AGAGTTCATTCCCAGTCTAAGATAGGCC-GGACCGAGGGTTGCGGTAGCAGGATCGACAGCACAC
* *
10933395 AAGGGGGAACTGGCCGA-CCCCTGGCTTGTGCATTCTACCTCTCCGGTCGGTTGTCCGCCGCACA
576 AAGGGGGAACTGGCCGATCCCC-GGCTTGTGCATTCTACCTCTCCGGCCGGTTGTCC-CCGCACG
* * *
10933459 CTCGTTTTGTAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTC
639 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTC
* ** * * * *
10933524 CCAGTCTAAGATCAGACC-AGGCCGAGGGTTGTGGCAGTAGGACCAGCAGCAAGATTGGTAGCAT
704 CCAGTCTAAGATCAGACCGA-ACCGAGGGTTGTGGCACCAAGACCAGCAGCAAGATCGATAGCAC
** * * * * *
10933588 GCA-GGGGGGACCAGGTTGATCCCCGGTTTACGCATTCT-ACT-TCTGACCGGCTGAGCTC-CGA
768 GCAGGGGGGGACCAGGCCGATCCCCGGCTTACGCATTATGACTCTCCGACCGGCTCAGCGCTCGA
* *
10933649 CACGCTCATTTCATGGGTTGGCTT-A
833 -ACGCTCATTTCATGGATTGACTTCA
* *
10933674 GGTATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACTGGT
1 -GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGA-TGGT
*
10933739 AGCGAGATCGACAGCACGTAGAGAGGGACCGGGTTGATCCCTGACTTGCACATTATGCCTCTCCG
64 AGCGAGATCGACAGCACG-AGAG-GGGACCGGGTTGATCCCTGGCTTGCACATTATGCCTCTCCG
* * * * * **
10933804 GTCAATTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGTAGCTCATTTCCAGTC
127 GACAGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGCTCATCACCAGTC
* *
10933869 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGACAGCAGGATCG
192 TAAGAATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGA-CGAGGGTTACGACAGCAGGATCG
* * * *
10933934 ACAGCACACATGGGGGATCGAGCCGGTCCCTGGCTTGCGCATTCTACCTCTCTGACTGGCTGAGT
256 ACAGCACACAGGGGGGATCGGGCCGATCCCT-GCTT-CGCATTCTACCTCTC-GACTGGCTGAGC
* * * * *
10933999 GCACGCACGCCCGCTTCGTGGGTTGGCTTCGGCATAGGGAGTTCATTCCATGTCTAAGCTCCAGC
318 GCCCGCACGCCCGTTTCGTGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * * * * *
10934064 CAGACTGAGGGTTGTGGTAGCGAGACCGACAGCACGCAGAAGGGGACCGAGATGATCCTCGACTT
383 CAGACTGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGGGGA-CGGGATGATCCCCGGCTT
* * * * * * *
10934129 GTGCATTATGCCTCTCCGGCCTGCTCAACGCCC-AATGCTCATTTCATGGGTTGACTTAGGCATA
447 GCGCATTATGCCTCTCC-GCCGGCTCAGCTCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * *
10934193 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATTGATAGCACA
511 CAGAGTTCATTCCCAGTCTAAGATAGG-CCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACA
* * * * * * * * * * *
10934258 CAGGGGGGGATTGGGCTGATCCCCGACTTTTGCATTCTACCTCTCCAGCCGACTGAGTGCCCACA
575 CAAGGGGGAACT-GGCCGATCCCCGGCTTGTGCATTCTACCTCTCCGGCCG-GT-TGTCCCCGCA
* * * ** **
10934323 CGCTTGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCTTGTCTAAATATACAGAGTTCAT
637 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCAT
*
10934388 TCCCAGTCTAAGATC-GAACCGAACCGAAGGTT
702 TCCCAGTCTAAGATCAG-ACCGAACCGAGGGTT
10934420 ACGATAGTAG
Statistics
Matches: 1294, Mismatches: 250, Indels: 104
0.79 0.15 0.06
Matches are distributed among these distances:
851 6 0.00
852 76 0.06
853 5 0.00
854 59 0.05
855 249 0.19
856 281 0.22
857 11 0.01
858 5 0.00
859 4 0.00
860 4 0.00
861 4 0.00
862 5 0.00
863 5 0.00
864 385 0.30
865 74 0.06
866 96 0.07
867 19 0.01
868 6 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (857 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGATGGTAG
CGAGATCGACAGCACGAGAGGGGACCGGGTTGATCCCTGGCTTGCACATTATGCCTCTCCGGACA
GTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGCTCATCACCAGTCTAAG
AATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACGAGGGTTACGACAGCAGGATCGACAGC
ACACAGGGGGGATCGGGCCGATCCCTGCTTCGCATTCTACCTCTCGACTGGCTGAGCGCCCGCAC
GCCCGTTTCGTGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGA
GGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGGGGACGGGATGATCCCCGGCTTGCGCATTAT
GCCTCTCCGCCGGCTCAGCTCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
TCCCAGTCTAAGATAGGCCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACACAAGGGGGAAC
TGGCCGATCCCCGGCTTGTGCATTCTACCTCTCCGGCCGGTTGTCCCCGCACGCTCGTTTCGTGG
GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
CAGACCGAACCGAGGGTTGTGGCACCAAGACCAGCAGCAAGATCGATAGCACGCAGGGGGGGACC
AGGCCGATCCCCGGCTTACGCATTATGACTCTCCGACCGGCTCAGCGCTCGAACGCTCATTTCAT
GGATTGACTTCA
Found at i:10934320 original size:158 final size:156
Alignment explanation
Indices: 10933872--10934364 Score: 429
Period size: 158 Copynumber: 3.1 Consensus size: 156
10933862 TCCAGTCTAA
* * * **
10933872 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * * * *
10933937 GCACACA-TGGGGGATCGAGCCGGTCCCTGGCTTGCGCATTCTACCTCT-CTGACTGGCTGAGTG
65 GCACACAGAGGGGGATCGAGCTGATCCCCGACTTGTGCATTCTACCTCTCCAG-C-CGCTGAGTG
* * *
10934000 CACGC-ACGCCCGCTTCGTGGGTTGGCTTCG
128 C-C-CAACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * *
10934030 GCATAGGGAGTTCATT-CCATGTCTAAGCTCCAGCCAGACTGAGGGTTGTGGTAGC-GAGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGA-CCGGACCGAGGGTTGCGGTAGCAG-GATCGA
* * * * * * * * * **
10934093 CAGCACGCAGAAGGGGACCGAGATGATCCTCGACTTGTGCATTATGCCTCTCCGGCCTGCTCAAC
63 CAGCACACAGAGGGGGATCGAGCTGATCCCCGACTTGTGCATTCTACCTCTCCAGCC-GCTGAGT
* * * *
10934158 GCCCAATGCTCATTTCATGGGTTGACTTAG
127 GCCCAACGCTCGTTTCGTGGGTTGGCTTAG
* *
10934188 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATTGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * *
10934253 GCACACAGGGGGGGATTGGGCTGATCCCCGACTTTTGCATTCTACCTCTCCAGCCGACTGAGTGC
65 GCACACAGAGGGGGATCGAGCTGATCCCCGACTTGTGCATTCTACCTCTCCAGCCG-CTGAGTGC
*
10934318 CCACACGCTTGTTTCGTGGGTTGGCTTAG
129 CCA-ACGCTCGTTTCGTGGGTTGGCTTAG
*
10934347 GTATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
10934365 TTGTCTAAAT
Statistics
Matches: 256, Mismatches: 67, Indels: 23
0.74 0.19 0.07
Matches are distributed among these distances:
157 7 0.03
158 169 0.66
159 78 0.30
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAG
CACACAGAGGGGGATCGAGCTGATCCCCGACTTGTGCATTCTACCTCTCCAGCCGCTGAGTGCCC
AACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:10934396 original size:26 final size:26
Alignment explanation
Indices: 10934348--10934398 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
10934338 TTGGCTTAGG
* **
10934348 TATACGGAGTTCATTCCTTGTCTAAA
1 TATACAGAGTTCATTCCCAGTCTAAA
10934374 TATACAGAGTTCATTCCCAGTCTAA
1 TATACAGAGTTCATTCCCAGTCTAA
10934399 GATCGAACCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (26 bp):
TATACAGAGTTCATTCCCAGTCTAAA
Found at i:10935910 original size:26 final size:26
Alignment explanation
Indices: 10935880--10935932 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10935870 GTTGACTTAG
10935880 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
10935906 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10935932 G
1 G
10935933 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10937112 original size:26 final size:26
Alignment explanation
Indices: 10937075--10937127 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10937065 GTTGACTTAG
*
10937075 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
10937101 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
10937127 G
1 G
10937128 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:10937388 original size:159 final size:157
Alignment explanation
Indices: 10937101--10937478 Score: 422
Period size: 159 Copynumber: 2.4 Consensus size: 157
10937091 CCCAATCTAA
* * * *
10937101 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGCAGTAGGATCGGCAG
1 GCATACGAAGTTCATTCCCAGTCTAAGACCAGACCGGACTGAGGGTTGCGCAGCAGGACCGGCAA
* * * * *
10937166 CACGTAAGAGGGATCGGGCCGATCCCCGACTTGCGTATTCTGCCTCTCCGGCTAGCTGAGTGCCC
66 CACGTAAGAGGGATCGGGCCGATCCCCGACTTACGTATTATGCCTCTCCGCCCAGCTCAGTGCCC
* * *
10937231 GCACGCCCGTTTCGTGGGTTGGCTTTG
131 GCACGCCCATTTCGTGGGTTGACTTAG
* * * *
10937258 GCATACGGAGTTCA-TCCCATGTCTAAGCCCCA-ACCGGACTGAGGGTTGTGGCAGCGGGACCGG
1 GCATACGAAGTTCATTCCCA-GTCTAAG-ACCAGACCGGACTGAGGGTTG-CGCAGCAGGACCGG
* ** *
10937321 TAACACGTAA-ATGGGGATCGGGTTGATCCCCGACTTACGTATTATGCCTCTCCGCCCGGCTCAG
63 CAACACGTAAGA--GGGATCGGGCCGATCCCCGACTTACGTATTATGCCTCTCCGCCCAGCTCAG
* *
10937385 TGCCCGCACGCTCATTTCGTGTGTTGACTTAG
126 TGCCCGCACGCCCATTTCGTGGGTTGACTTAG
* * * * *
10937417 GTATAC-ATAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGACCG
1 GCATACGA-AGTTCATTCCCAGTCTAAGACCAGACCGGACTGAGGGTTGCG-CAGCAGGACCG
10937479 ACAGCATGCA
Statistics
Matches: 181, Mismatches: 31, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
156 5 0.03
157 37 0.20
158 23 0.13
159 111 0.61
160 5 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCCAGTCTAAGACCAGACCGGACTGAGGGTTGCGCAGCAGGACCGGCAA
CACGTAAGAGGGATCGGGCCGATCCCCGACTTACGTATTATGCCTCTCCGCCCAGCTCAGTGCCC
GCACGCCCATTTCGTGGGTTGACTTAG
Found at i:10937603 original size:26 final size:26
Alignment explanation
Indices: 10937566--10937616 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
10937556 TGGCTTAGGT
*
10937566 ATACGGAGTTCATTCC-ATGTCTAAGC
1 ATACGGAATTCATTCCTA-GTCTAAGC
10937592 ATACGGAATTCATTCCTAGTCTAAG
1 ATACGGAATTCATTCCTAGTCTAAG
10937617 ATCAGACTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACGGAATTCATTCCTAGTCTAAGC
Found at i:10937965 original size:159 final size:158
Alignment explanation
Indices: 10937688--10938274 Score: 416
Period size: 157 Copynumber: 3.6 Consensus size: 158
10937678 GGGACTAGGT
* * * * * * * * *
10937688 CGATCCCTGGCTTACGCATTCTACCTCTTCGACCGGCTGAGCGCCCACACGCCCGTTTCGTGGGT
1 CGATCCCCGACTTACGCATTATGCCTCTTCGGCCGGCTTAGCACCCGCACGCTCGTTTCGTGGGT
* * * * * *
10937753 TGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAATCGGACTAAGGGTTGTGGCAGC-
66 TGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCCAATCAGACCAAGGGTTGCGACAGCA
*
10937816 GAGACCGACAGCATGCAGAGGGGGACC-AGGC
131 G-GACCGACAGCA-ACAG-GGGGGACCGA-GC
** * *
10937847 CGATCCCCGACTTGGGCATTATGCCTCTTTGGCCGGCTTAGCCCCCGCACGCTCGTTTCGTGGGT
1 CGATCCCCGACTTACGCATTATGCCTCTTCGGCCGGCTTAGCACCCGCACGCTCGTTTCGTGGGT
* * * ** * *
10937912 TGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATCTGATCAGACCGAGGGTTGCGATAGCA
66 TGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCCAATCAGACCAAGGGTTGCGACAGCA
*
10937976 GGATCGACAGCAACAGGGGGGACCGAGC
131 GGACCGACAGCAACAGGGGGGACCGAGC
* * * * * * * * *
10938004 TGATGCCCTACTTACGCATTCTGCCTCTCCGGTCGG-TTGAGCACCCGCACGCTCATTTCATGTG
1 CGATCCCCGACTTACGCATTATGCCTCTTCGGCCGGCTT-AGCACCCGCACGCTCGTTTCGTGGG
* * ** *** * *
10938068 TTGGCTTAGGCATACGGAGTTCATT-CCATGTGTAAGCCCCAGCCAGATTGAGGGTTGTGGCAGC
65 TTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCCAATCAGACCAAGGGTTGCGACAGC
*
10938132 AGGACCGACAGCGGGATCGGTAGCATGCAAAGGGGGACCGGGC
130 AGGACCGACAGC---A-----A-CA-G----GGGGGACCGAGC
* * * * * ** * *
10938175 TGATCTCCGGCTTGCGCATTATGCCTTTTCGGCCGG-TTGAGTGCCTGCAGGCTCGTTTCGTGGG
1 CGATCCCCGACTTACGCATTATGCCTCTTCGGCCGGCTT-AGCACCCGCACGCTCGTTTCGTGGG
* *
10938239 TTGGCTTAGGCACACGGAGTTCATT-CCATGTTTAAG
65 TTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAG
10938275 CATATGGAGT
Statistics
Matches: 335, Mismatches: 74, Indels: 26
0.77 0.17 0.06
Matches are distributed among these distances:
156 5 0.01
157 115 0.34
158 4 0.01
159 109 0.33
160 5 0.01
165 1 0.00
166 2 0.01
167 1 0.00
171 93 0.28
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
CGATCCCCGACTTACGCATTATGCCTCTTCGGCCGGCTTAGCACCCGCACGCTCGTTTCGTGGGT
TGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCCAATCAGACCAAGGGTTGCGACAGCA
GGACCGACAGCAACAGGGGGGACCGAGC
Found at i:10938121 original size:157 final size:159
Alignment explanation
Indices: 10937676--10938275 Score: 512
Period size: 159 Copynumber: 3.7 Consensus size: 159
10937666 AGTACGTAGG
* * * * * * * * * *
10937676 GGGGGACTAGGTCGATCCCTGGCTTACGCATTCTACCTCTTCGACCGGCTGAGCGCCCACACGCC
1 GGGGGACCAGGCCGATCCCCGACTTACGCATTCTGCCTCTTCGGCCGGTTGAGCACCCGCACGCT
* * * *
10937741 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACTAAGGG
66 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAGGG
*
10937806 TTGTGGCAGC-GAGACCGACAGCATGCAGA
131 TTGTGGCAGCAG-GACCGACAGCATACAGA
** * * *
10937835 GGGGGACCAGGCCGATCCCCGACTTGGGCATTATGCCTCTTTGGCCGGCTT-AGCCCCCGCACGC
1 GGGGGACCAGGCCGATCCCCGACTTACGCATTCTGCCTCTTCGGCCGG-TTGAGCACCCGCACGC
* * ** * *
10937899 TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATCTGATCAGACCGA
65 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-TCAGACTGA
* ** *
10937962 GGGTTGCGATAGCAGGATCGACAGCA-ACAG-
128 GGGTTGTGGCAGCAGGACCGACAGCATACAGA
* * * * *
10937992 GGGGGACC-GAGCTGATGCCCTACTTACGCATTCTGCCTCTCCGGTCGGTTGAGCACCCGCACGC
1 GGGGGACCAG-GCCGATCCCCGACTTACGCATTCTGCCTCTTCGGCCGGTTGAGCACCCGCACGC
* * * * * *
10938056 TCATTTCATGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTGTAAGCCCCAGCCAGATTGAGG
65 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAGG
10938121 GTTGTGGCAGCAGGACCGACAGCGGGATCGGTAGCATGCAAA
130 GTTGTGGCAGCAGGACCGACAGC---A----TA-CA-G---A
* * * * * * * ** * *
10938163 GGGGGACCGGGCTGATCTCCGGCTTGCGCATTATGCCTTTTCGGCCGGTTGAGTGCCTGCAGGCT
1 GGGGGACCAGGCCGATCCCCGACTTACGCATTCTGCCTCTTCGGCCGGTTGAGCACCCGCACGCT
* *
10938228 CGTTTCGTGGGTTGGCTTAGGCACACGGAGTTCATTCCATGTTTAAGC
66 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
10938276 ATATGGAGTT
Statistics
Matches: 345, Mismatches: 73, Indels: 34
0.76 0.16 0.08
Matches are distributed among these distances:
156 6 0.02
157 114 0.33
158 6 0.02
159 115 0.33
160 6 0.02
165 1 0.00
166 2 0.01
167 1 0.00
171 93 0.27
172 1 0.00
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
GGGGGACCAGGCCGATCCCCGACTTACGCATTCTGCCTCTTCGGCCGGTTGAGCACCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAGGG
TTGTGGCAGCAGGACCGACAGCATACAGA
Found at i:10938457 original size:671 final size:677
Alignment explanation
Indices: 10937548--10938776 Score: 1613
Period size: 671 Copynumber: 1.8 Consensus size: 677
10937538 CACGCTCATA
* * *
10937548 TCGTGGGATGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCATACGGAATTCATTCCTAGTC
1 TCGTGGGATGGCTTAGGCACACGGAGTTCATTCCATGTCTAAGCATACGGAATTCATTCCCAGTC
* * * *
10937613 TAAGATCAGACTGAATCGAGGGTTACGGCAGCAGGACCAGCAATAGGATCGACAGTACGTAGGGG
66 TAAGATCAGACCGAACCGAGGGTT-----AGCA-G--CAGCAATAGGATAGACAGCACGTAGGGG
* * *
10937678 GGGACTAGGTCGATCCCTGGCTTACGCATTCTACCTCTTCGACCGGCTGAGCGCCCACACGCCCG
123 GGGACCAGGCCGATCCCTGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGCCCACACGCCCG
* * * *
10937743 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ATCGGACTAAGGGT
188 TTTCATGGGTTGGCTTAGGCAGAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-GGACCAAGGGT
* * ** *
10937807 TGTGGCAGCGAGACCGACAGCATGCAGAGGGGGACCAGGCCGATCCCCGACTTGGGCATTATGCC
252 TGTGGCAACAAGACCGACAGCACACAGAGGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCC
* * * * *
10937872 TCTTTGGCCGGCTTAGCCCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC
317 TCTTCGACCGGCTCAGCCCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCAAACAGAGTTCATTC
* *
10937937 CCAGTCTAAGATCT-GATCAGACCGAGGGTTGC-GATAGCAGGATCGACAGCA-ACAGGGGGGAC
382 CCAGTCTAAGAT-TGGACCAGACCGAGGGTTGCAG-CAGCAGGATCGACAGCATACAGGGGGGAC
* * *
10937999 C-GAGCTGATGCCCTA-CTTACGCATTCTGCCTCTCCGG-TCGGTTGAGCACCCGCACGCTCATT
445 CAG-GCCGAT-CCCCAGCTTACGCATTCTGCCTCTCCGGCT-GGCTGAGCACCCGCACGCTCATT
*
10938061 TCAT-GTGTTGGCTTAGGCATACGGAGTTCATTCCATGTGTAAGCCCCAGCCAGATTGAGGGTTG
507 TCATAG-GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATTGAGGGTTG
10938125 TGGCAGCAGGACCGACAGCGGGATCGGTAGCATGCAAAGGGGGACCGGGCTGATCTCCGGCTTGC
571 TGGCAGCAGGACCGACAGCGGGATCGGTAGCATGCAAAGGGGGACCGGGCTGATCTCCGGCTTGC
10938190 GCATTATGCCTTTTCGGCCGGTTGAGTGCCTGCAGGCTCGTT
636 GCATTATGCCTTTTCGGCCGGTTGAGTGCCTGCAGGCTCGTT
* * * *
10938232 TCGTGGGTTGGCTTAGGCACACGGAGTTCATTCCATGTTTAAGCATATGGAGTTCATTCCCAGTC
1 TCGTGGGATGGCTTAGGCACACGGAGTTCATTCCATGTCTAAGCATACGGAATTCATTCCCAGTC
* * * *
10938297 TAAGATCCGACCGGACCGAGGGTT-GC-G-A-CAATAGGATAGGCAGCACGTA-GGGGGGACCGG
66 TAAGATCAGACCGAACCGAGGGTTAGCAGCAGCAATAGGATAGACAGCACGTAGGGGGGGACCAG
* * * **
10938357 GCCGAT-CCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTACGCCCGTTTCATG
131 GCCGATCCCT-GGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGCCCACACGCCCGTTTCATG
* *
10938421 GGTTGGCTTAGGTAGAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAA
195 GGTTGGCTTAGGCAGAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCAAGGGTTGTGGCAA
* * * * *
10938486 CAAGACTGGCAGCCCACAGAGGGGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGAC
260 CAAGACCGACAGCACACAGAGGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGAC
* ** * * * *
10938551 TGGCTCAGCGTCTGCATGCTCGTTTCGTAGGTTGACTTATGCAAACGGAGTTCATTCCCAGTCTA
325 CGGCTCAGCCCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCAAACAGAGTTCATTCCCAGTCTA
* * * *
10938616 AGATTGGACCAGATCGAGGGTTGCAGCAGCAGGATCGATAGCATGCAGGGGGGATCAGGCCGATC
390 AGATTGGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCATACAGGGGGGACCAGGCCGATC
** * ** *
10938681 CCCAGCTTGTGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCTTGTTTCGTAGGTTGGCT
455 CCCAGCTTACGCATTCTGCCTCTCCGGCTGGCTGAGCACCCGCACGCTCATTTCATAGGTTGGCT
10938746 TAGGCATACGGAGTTCATTCCATGTCTAAGC
520 TAGGCATACGGAGTTCATTCCATGTCTAAGC
10938777 ATATCGAGTT
Statistics
Matches: 469, Mismatches: 67, Indels: 30
0.83 0.12 0.05
Matches are distributed among these distances:
670 4 0.01
671 266 0.57
672 114 0.24
673 4 0.01
676 1 0.00
678 2 0.00
684 78 0.17
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (677 bp):
TCGTGGGATGGCTTAGGCACACGGAGTTCATTCCATGTCTAAGCATACGGAATTCATTCCCAGTC
TAAGATCAGACCGAACCGAGGGTTAGCAGCAGCAATAGGATAGACAGCACGTAGGGGGGGACCAG
GCCGATCCCTGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGCCCACACGCCCGTTTCATGG
GTTGGCTTAGGCAGAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCAAGGGTTGTGGCAAC
AAGACCGACAGCACACAGAGGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGACC
GGCTCAGCCCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCAAACAGAGTTCATTCCCAGTCTAA
GATTGGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCATACAGGGGGGACCAGGCCGATCC
CCAGCTTACGCATTCTGCCTCTCCGGCTGGCTGAGCACCCGCACGCTCATTTCATAGGTTGGCTT
AGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATTGAGGGTTGTGGCAGCAGGACCGA
CAGCGGGATCGGTAGCATGCAAAGGGGGACCGGGCTGATCTCCGGCTTGCGCATTATGCCTTTTC
GGCCGGTTGAGTGCCTGCAGGCTCGTT
Found at i:10939894 original size:159 final size:158
Alignment explanation
Indices: 10939517--10939894 Score: 377
Period size: 159 Copynumber: 2.4 Consensus size: 158
10939507 AAGCATACAA
* * *
10939517 AGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGACAGCAGGATCAACAGCACACAA
1 AGTTCATTTCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCGACAGCACACAA
* ** * * ** * * *
10939582 AAGGGACCGAGCCGATCCCCTGCTTGTGCATTCTGCCTCTTCGGCCGGCTGAGCGCTCTCATGCC
66 AAGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCAACCGGCTCAGCGCCCACATGCC
*
10939647 TGTTTCATGGGTTAGCTTAGGCATAGGG
131 TGTTTCATGGGTTAGCTTAGGCATACGG
** ** * * * **
10939675 AGTTCA-TTCCATGTCTAAGCCCCAG-CCGAACCAAGGGTTGCGGCAACAGAACCGGTAGCACAC
1 AGTTCATTTCCA-GTCTAAG-ATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCGACAGCACAC
** ** * * *
10939738 AGAGGGGGATTGGGTCGATCCCCGGTTTACGCATTATGCCTCTCCAACCGGCTCAGCGCCCACAT
64 A-AAAGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCAACCGGCTCAGCGCCCACAT
*
10939803 GCTTGTTTCATGGGTT-GACTTAGGCATACGG
128 GCCTGTTTCATGGGTTAG-CTTAGGCATACGG
** *
10939834 AGTTCATTTCCAGTCTAAGATTGGACC-AGACTGAGGGTTGTGGCAGCAGGATCGACAGCAC
1 AGTTCATTTCCAGTCTAAGATCAGACCGA-ACTGAGGGTTGCGGCAGCAGGATCGACAGCAC
10939895 GTAGGGGGGA
Statistics
Matches: 170, Mismatches: 43, Indels: 13
0.75 0.19 0.06
Matches are distributed among these distances:
157 4 0.02
158 46 0.27
159 115 0.68
160 5 0.03
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (158 bp):
AGTTCATTTCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCGACAGCACACAA
AAGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCAACCGGCTCAGCGCCCACATGCC
TGTTTCATGGGTTAGCTTAGGCATACGG
Found at i:10940015 original size:26 final size:26
Alignment explanation
Indices: 10939985--10940037 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10939975 GTTGGCTTAG
10939985 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
10940011 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10940037 G
1 G
10940038 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10940395 original size:26 final size:26
Alignment explanation
Indices: 10940365--10940417 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10940355 GTTGACTTAG
*
10940365 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
10940391 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
10940417 G
1 G
10940418 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10947708 original size:158 final size:158
Alignment explanation
Indices: 10947414--10947941 Score: 485
Period size: 158 Copynumber: 3.3 Consensus size: 158
10947404 GGCTGAGCCC
* * * * **** * *
10947414 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-ATCTAAGATTGGACCAGA
1 CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CTATGTCTAAGCCCAGATCGGA
* ** * * * * *
10947478 CCGAGGGTTGCGGCAACAGGATCG-ACAGCACGTAGGGGGGACTGGGCCAATCCCC-GACGTGCA
65 CCAAGGGTTGTAGCAGCAGGA-CGAACAGCACGCAGGGGGGACCGGGCCAATCCCCAG-CTTGCG
*
10947541 CATTCTGCCTCTCCGGCCGACTGAGCGCCCG
128 CATTCTGCCTCTCCGGCCGACTGAGCACCCG
* *
10947572 CACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCAG-TCGGAC
1 CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGCCCAGATCGGAC
* *** * * * *
10947636 CAAGGGTTGT-GACAGCGGGACGGGTAGCATGCAGAGGTGGACCGGGCCGATCCCCAGCTTGTGC
66 CAAGGGTTGTAG-CAGCAGGACGAACAGCACGCAG-GGGGGACCGGGCCAATCCCCAGCTTGCGC
* * * * * *
10947700 ATTATGCCTCTCCAGTCGGCTCAGCAACCG
129 ATTCTGCCTCTCCGGCCGACTGAGCACCCG
* * **
10947730 CACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTA-GTCTAAGATCAGATCGGA
1 CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CTATGTCTAAGCCCAGATCGGA
* * ** * **
10947794 CCGAGGGTTGTAGGAGCAGGATTAACAGCACGCAGGGGGGACTGGGCCAATCCCTGGCTTGCGCA
65 CCAAGGGTTGTAGCAGCAGGACGAACAGCACGCAGGGGGGACCGGGCCAATCCCCAGCTTGCGCA
* *
10947859 TTCTGCCTCTCCGGCC-AGCTGAACACCCA
130 TTCTGCCTCTCCGGCCGA-CTGAGCACCCG
** *
10947888 CACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGC
10947942 ATATGAAGTT
Statistics
Matches: 292, Mismatches: 68, Indels: 20
0.77 0.18 0.05
Matches are distributed among these distances:
156 3 0.01
157 29 0.10
158 226 0.77
159 33 0.11
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGCCCAGATCGGAC
CAAGGGTTGTAGCAGCAGGACGAACAGCACGCAGGGGGGACCGGGCCAATCCCCAGCTTGCGCAT
TCTGCCTCTCCGGCCGACTGAGCACCCG
Found at i:10948610 original size:156 final size:155
Alignment explanation
Indices: 10948367--10948972 Score: 576
Period size: 157 Copynumber: 3.9 Consensus size: 155
10948357 CAAGGTTGCA
* *
10948367 GCAGCAGGATCGGCAGCACGTAGGGGGGACCGGGCCAATCCCTGACTTACGCATTCTGCCTCTCC
1 GCAGC-GGATCGGCAGCACGTA-GGGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCC
* * *
10948432 GACCGCTGAGCGTCCGCCCGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
64 GACGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
10948497 TAAGCCCCAG-CTGGATC-GAGGGTTGTG
129 TAAGCCCCAGTC-GGA-CAGAGGGTTGTG
* * * * *
10948524 GCAGTGGGATCGGCAGCACGTTGGGGGACCGGGCCGATCCCTGGCTTGCACATTCTACCTCTCCG
1 GCAG-CGGATCGGCAGCACGTAGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCG
* * *
10948589 TCGGATGAGCGCCCGCACGCCCGTTTAGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
65 ACGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
10948654 AAGCCCCAGTCGGACAGAGGGTTGTG
130 AAGCCCCAGTCGGACAGAGGGTTGTG
* * * * * *
10948680 GCAGCGGACCGGCAGCACGCAGAGGGGGACCGGGTCGAT-CCTCGGCTTACGTATTATGCCTCTT
1 GCAGCGGATCGGCAGCACG--TAGGGGGACCGGGCCGATCCCT-GGCTTACGCATTCTGCCTCTC
* * * * * * *
10948744 CGACCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC-GG
63 CGA-CGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
** * ** ***
10948808 TCTAAG-ATCAGACCGGATTGAGGGTTACA
127 TCTAAGCCCCAG-TCGGACAGAGGGTTGTG
* ** * * * * * * *
10948837 GTAGCAGGATCTACAGTACGCAGTTGGGGACCGAGTCGATCCC-CGCTTGCGCAATCTGCCTCTC
1 GCAGC-GGATCGGCAGCACGTAG--GGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTC
* * * * * * *
10948901 CGACCGGCTGAGCGCCCGCATGCTCATTTTGTAGGTTGGCATAGGCATACGGAGTTCATTCCATG
63 CGA-CGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
*
10948966 TATAAGC
127 TCTAAGC
10948973 ATATGGAGTT
Statistics
Matches: 369, Mismatches: 66, Indels: 26
0.80 0.14 0.06
Matches are distributed among these distances:
155 14 0.04
156 131 0.36
157 142 0.38
158 80 0.22
159 2 0.01
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.23
Consensus pattern (155 bp):
GCAGCGGATCGGCAGCACGTAGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGA
CGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
AGCCCCAGTCGGACAGAGGGTTGTG
Found at i:10948831 original size:157 final size:159
Alignment explanation
Indices: 10948318--10948973 Score: 620
Period size: 156 Copynumber: 4.2 Consensus size: 159
10948308 CCCAATCTAA
* * * * *
10948318 GCATACGGAGTTCATTTCCA-GTCTAAG-ATCGGACCAGA-CCAAGGTTGCAGCAGCAGGATCGG
1 GCATACGGAGTTCA-TTCCATGTCTAAGCACCAG-CCGGATCGAGGGTTGCAGCAGCAGGATCGG
* * *
10948380 CAGCACGTAG-GGGGGACCGGGCCAATCCCTGACTTACGCATTCTGCCTCTCCGACC-GCTGAGC
64 CAGCACGCAGTGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGC
* *
10948443 GTCCGCCCGCCCGTTTCGTGGGTTGGCTTAG
129 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
* * * ** **
10948474 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGATCGAGGGTTGTGGCAGTGGGATCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGATCGAGGGTTGCAGCAGCAGGATCGGCA
* * * * * *
10948539 GCACG--TTGGGGGACCGGGCCGATCCCTGGCTTGCACATTCTACCTCTCCG-TCGGATGAGCGC
66 GCACGCAGTGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGC
*
10948601 CCGCACGCCCGTTTAGTGGGTTGGCTTAG
131 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
* * * ** *
10948630 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA-CAGAGGGTTGTGGCAGC-GGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGATC-GAGGGTTGCAGCAGCAGGATCGGC
* * * * * *
10948693 AGCACGCAGAGGGGGACCGGGTCGAT-CCTCGGCTTACGTATTATGCCTCTTCGACCGGCTCAGC
65 AGCACGCAGTGGGGGACCGGGCCGATCCCT-GGCTTACGCATTCTGCCTCTCCGACCGGCTGAGC
* * * *
10948757 GCCCGTACGCTCGTTTCGTGGGTTGACTTAT
129 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
* * * * * **
10948788 GCATACGGAGTTCATTCC-GGTCTAAG-ATCAGACCGGATTGAGGGTTACAGTAGCAGGATCTAC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAG-CCGGATCGAGGGTTGCAGCAGCAGGATCGGC
* * * * * * *
10948851 AGTACGCAGTTGGGGACCGAGTCGATCCC-CGCTTGCGCAATCTGCCTCTCCGACCGGCTGAGCG
65 AGCACGCAGTGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCG
* * * * * *
10948915 CCCGCATGCTCATTTTGTAGGTTGGCATAG
130 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
*
10948945 GCATACGGAGTTCATTCCATGTATAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
10948974 TATGGAGTTC
Statistics
Matches: 406, Mismatches: 78, Indels: 29
0.79 0.15 0.06
Matches are distributed among these distances:
155 20 0.05
156 151 0.37
157 149 0.37
158 83 0.20
159 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGATCGAGGGTTGCAGCAGCAGGATCGGCA
GCACGCAGTGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGC
CCGCACGCCCGTTTCGTGGGTTGGCTTAG
Found at i:10949194 original size:13 final size:13
Alignment explanation
Indices: 10949159--10949194 Score: 58
Period size: 12 Copynumber: 2.9 Consensus size: 13
10949149 GTGCTGGTAC
10949159 TTGGCCCT-TATA
1 TTGGCCCTCTATA
10949171 TTGGCCC-CTATA
1 TTGGCCCTCTATA
10949183 TTGGCCCTCTAT
1 TTGGCCCTCTAT
10949195 CCCTCATCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 18 0.82
13 4 0.18
ACGTcount: A:0.14, C:0.31, G:0.17, T:0.39
Consensus pattern (13 bp):
TTGGCCCTCTATA
Found at i:10949658 original size:26 final size:26
Alignment explanation
Indices: 10949622--10949674 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10949612 GTTGACTTAG
10949622 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
10949648 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
10949674 G
1 G
10949675 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:10950136 original size:160 final size:157
Alignment explanation
Indices: 10949721--10950136 Score: 391
Period size: 158 Copynumber: 2.6 Consensus size: 157
10949711 GGGACAGAGC
* * * * * * *
10949721 CGATCCTCGGCTTGCGTATTCTGCCT-T-CGATCGGTTGAGCGCCCGTACAC-C-CGTTTCGTGG
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCAGCTCAACGCCC--ACACGCTCGTTTCATGG
* * * * * *
10949782 GTTGGCTTAAGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAGC
64 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAACCAGACCGAGGGTTATGGCAAC
* *
10949847 GGGATCGACAGCACACAGAGGGGGATCGGT
129 AGGACCGACAG-ACACAGAGGGGGATCGGT
* * * *
10949877 CGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCAGCTCAATGCCCACACGCTCATTTCTTGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCAGCTCAACGCCCACACGCTCGTTTCATGGGT
* * * * * * *
10949942 TGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATCAAATCGGAGCGAGGGTTGTGGCAACA
66 TGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAAACCAGACCGAGGGTTATGGCAACA
*
10950006 GGACCGACAG-CAC-GTA-GGGGACTGGGT
130 GGACCGACAGACACAG-AGGGGGA-TCGGT
* * * *
10950033 CGATCCCCGGCTTGTGCATTCTGCCTCTCC-AGTCGGCTGAGCGCCTGCACGCACGCTCGTTTCA
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-TCAGCTCAACGCC--CA--CACGCTCGTTTCA
10950097 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
61 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
10950137 CATACGAAGT
Statistics
Matches: 211, Mismatches: 36, Indels: 22
0.78 0.13 0.08
Matches are distributed among these distances:
155 7 0.03
156 72 0.34
157 2 0.01
158 79 0.37
159 6 0.03
160 45 0.21
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (157 bp):
CGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCAGCTCAACGCCCACACGCTCGTTTCATGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAACCAGACCGAGGGTTATGGCAACAG
GACCGACAGACACAGAGGGGGATCGGT
Found at i:10950161 original size:26 final size:26
Alignment explanation
Indices: 10950110--10950162 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10950100 GTTGGCTTAG
* *
10950110 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGACTAA
10950136 GCATACGAAGTTCATTCCCA-GACTAA
1 GCATACGAAGTTCATT-CCATGACTAA
10950162 G
1 G
10950163 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGACTAA
Found at i:10950520 original size:26 final size:26
Alignment explanation
Indices: 10950490--10950542 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10950480 GTTGACTTAG
10950490 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
10950516 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
10950542 G
1 G
10950543 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10950996 original size:158 final size:157
Alignment explanation
Indices: 10950516--10951345 Score: 565
Period size: 158 Copynumber: 5.2 Consensus size: 157
10950506 CCCAGTCTAA
* * * * *
10950516 GCATACGGAGTTCATTCTCA-GTCTAAGATCAGACCAGATCGAAGGTTATGATAACAGGATCGAC
1 GCATACGGAGTTCATTC-CATGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGAC
** * * * * *
10950580 AGCACGCATAGGGGACCGGGTTGATCCTCGGCTTGCACATTCTACCTCTTCGGCCGGCTGAGCA-
65 AGCACGCAGGGGGGATC-GGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAG-AG
*
10950644 CCCGCATG-TCCATTTTC-TGGGTTGGCTTAG
128 CCCGCACGCT-CA-TTTCATGGGTTGGCTTAG
* * * * * * *
10950674 GCATAGGGAGTTCATTCCATGTCTAA-ACCCCA-ACC-GAAGCAAGGGTTGTGGCAGCCGGA-CC
1 GCATACGGAGTTCATTCCATGTCTAAGA--TCAGACCAG-ACCGAGGGTTGTGGTAGCAGGATCG
* * * * * * * * * * *
10950735 AGCAGCACGTAGAGAGGGACCACGCCGATCCTCGACTTGTGCATTGTGCCTCTTCGGCAGGCTCA
63 A-CAGCACGCAG-GGGGGATC-GGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGA
* * * * *
10950800 -ACGCCCGGACGCTCGTTTCGTGGGTTGACTTAT
125 GA-GCCCGCACGCTCATTTCATGGGTTGGCTTAG
*
10950833 GCATACGGAGTTCATTCC-TAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGTAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGAC
* * *
10950897 AGCACGCAGGGGGGATCGGACTGATCCCCAG-TTGACACATTCTGCCTCTTCGGTCGGCTGAGAG
65 AGCACGCAGGGGGGATCGG-CTGATCCCCGGCTTG-CGCATTCTGCCTCTTCGGCCGGCTGAGAG
* *
10950961 CCCCCACGCTCATTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCATTTCATGGGTTGGCTTAG
** * * *
10950991 GCATACGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCAAGGGTTATGGCAGCAAGACTGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGG-T-T--------G--TGGT
* * * *
10951055 AGCGGGATCGACAGCACGCAGAGGGGGATTGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCG
53 AGCAGGATCGACAGCACGCAG-GGGGGA-TCGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCG
** * * * * *
10951120 GCCGATTGAGCGCCCACACCCTCGTTTCATGGGTTGACTTAG
116 GCCGGCTGAGAGCCCGCACGCTCATTTCATGGGTTGGCTTAG
* * * * ** * *
10951162 GCATACGGAGTTCATCCCCA-GTCTAAGATTAGATCGGATTGAGGGTTGTGGTAGCATGATTGAC
1 GCATACGGAGTTCAT-TCCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGAC
* * * * ** * * * * *
10951226 AGTACGCAGGGGGGCTCGGGTCGGTCCTTGGCTTGTGCATTCTACCGC-TCTGGCCGACTGAGCG
65 AGCACGCAGGGGGGATCGGCT-GATCCCCGGCTTGCGCATTCTGCCTCTTC-GGCCGGCTGAGAG
10951290 CCCGCACGCTCATTTCATGGGTTGGCTTAG
128 CCCGCACGCTCATTTCATGGGTTGGCTTAG
10951320 GCATACGGAGTT-ATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
10951346 CATACGGAGT
Statistics
Matches: 523, Mismatches: 109, Indels: 81
0.73 0.15 0.11
Matches are distributed among these distances:
156 3 0.01
157 25 0.05
158 222 0.42
159 137 0.26
160 6 0.01
161 1 0.00
168 1 0.00
169 1 0.00
170 25 0.05
171 93 0.18
172 9 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGACA
GCACGCAGGGGGGATCGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGAGCCC
GCACGCTCATTTCATGGGTTGGCTTAG
Found at i:10951354 original size:25 final size:26
Alignment explanation
Indices: 10951320--10951371 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10951310 GTTGGCTTAG
10951320 GCATACGGAG-TTATT-CCATGTCTAA
1 GCATACGGAGTTTATTCCCA-GTCTAA
10951345 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTTATTCCCAGTCTAA
10951371 G
1 G
10951372 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 10 0.40
26 12 0.48
27 3 0.12
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTTATTCCCAGTCTAA
Found at i:10951545 original size:26 final size:26
Alignment explanation
Indices: 10951515--10951584 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
10951505 GTTAGCTTAG
10951515 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
10951541 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
10951567 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
10951585 CAATGTAAGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:10951593 original size:26 final size:25
Alignment explanation
Indices: 10951515--10951593 Score: 90
Period size: 26 Copynumber: 3.0 Consensus size: 25
10951505 GTTAGCTTAG
10951515 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCATG--TAA
*
10951541 GCATACGGAGTTCATT-CCTTGTCTAA
1 GCATACGGAGTTCATTCCCATG--TAA
10951567 GCATACGGAGTTCATTCCCAATGTAA
1 GCATACGGAGTTCATTCCC-ATGTAA
10951593 G
1 G
10951594 ATTTTGAGCC
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
26 45 0.92
27 2 0.04
28 2 0.04
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCATGTAA
Found at i:10952458 original size:26 final size:26
Alignment explanation
Indices: 10952428--10952480 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10952418 GTTGGCTTAG
* *
10952428 GCATACGGATTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
10952454 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
10952480 G
1 G
10952481 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:10952696 original size:12 final size:12
Alignment explanation
Indices: 10952679--10952709 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
10952669 GCAGCAGGAC
10952679 CGGTAGCGGGAT
1 CGGTAGCGGGAT
10952691 CGGTAGCGGGAT
1 CGGTAGCGGGAT
10952703 CGGTAGC
1 CGGTAGC
10952710 ACACAGAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.16, C:0.19, G:0.48, T:0.16
Consensus pattern (12 bp):
CGGTAGCGGGAT
Found at i:10952838 original size:26 final size:26
Alignment explanation
Indices: 10952802--10952854 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10952792 GTTGACTTAG
* *
10952802 GCATAGGGAGTTCATCCCCCGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
10952828 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
10952854 G
1 G
10952855 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10953200 original size:159 final size:157
Alignment explanation
Indices: 10952828--10953339 Score: 463
Period size: 159 Copynumber: 3.2 Consensus size: 157
10952818 CCCCGTCTAA
* *
10952828 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA-AGCGGACCAAGGGTTGTGGCAGCAGGACCGGCA
* * * * * **
10952893 GCATGCAGA-GGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCT-TCGACCGGCTGAGCGC
65 GTACGTAGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCT-GACAAGCTGAGCGC
* * * *
10952956 CCGTACGCCCGTTTCGTGGGTTGGCTTAG
129 CCGTACACTCGTTTCATGGGTTGACTTAG
* ** ** * ** * *
10952985 GCATAGGGAGTTCATTCCTTGTCTAAGCCCCAGCCGGACTGAGGGTCGTGGTAGCAGGACCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAG-CGGACCAAGGGTTGTGGCAGCAGGACCGGCA
* * * * * *
10953050 GTAGGTAGAGGAGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCTGGCAAGCTCAACGC
65 GTACGTAGAGG-GGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACAAGCTGAGCGC
*
10953115 CCGTACACTCATTTCATGGGTTGACTTAG
129 CCGTACACTCGTTTCATGGGTTGACTTAG
* **
10953144 GCATACGGAGTTCATTCCCAGTCTAAGATCGAAGTGGACCAAGGGTTGCAGCAGCAGGACCAGAA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-AAGCGGACCAAGGGTTGTGGCAGCAGGACC-G--
* * * * *
10953209 GCAGGATCGACAACATACAGGGGGACCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGATC
62 GCA-G-T-----ACGTAGA-GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGA-C
* * * *
10953274 GA-CTGAGCACCTGCACACTCGTTTCATGGGTTGACTTAG
118 AAGCTGAGCGCCCGTACACTCGTTTCATGGGTTGACTTAG
*
10953313 GCATACGGAGTTCATCCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
10953340 CATACGGAGT
Statistics
Matches: 279, Mismatches: 59, Indels: 22
0.77 0.16 0.06
Matches are distributed among these distances:
156 1 0.00
157 57 0.20
158 1 0.00
159 111 0.40
160 4 0.01
162 3 0.01
163 1 0.00
164 1 0.00
169 96 0.34
170 4 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.21
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAGCGGACCAAGGGTTGTGGCAGCAGGACCGGCAG
TACGTAGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACAAGCTGAGCGCCC
GTACACTCGTTTCATGGGTTGACTTAG
Found at i:10953343 original size:26 final size:26
Alignment explanation
Indices: 10953313--10953365 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10953303 GTTGACTTAG
10953313 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
10953339 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
10953365 G
1 G
10953366 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10953731 original size:158 final size:158
Alignment explanation
Indices: 10953339--10953838 Score: 502
Period size: 158 Copynumber: 3.2 Consensus size: 158
10953329 CCCAGTCTAA
* *
10953339 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTACGGCAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATTGAC
* * *
10953403 AGCACAT-GGGGGGA-TCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCAGCCTG-TTGAGT
65 AGCACATAGGGGGGACT-GGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGCTT-AGC
** *
10953465 GCCCGCAC-CCCGTTTCATGGGTTGGCTTAG
128 GCCCGCACGCTTGTTTCGTGGGTTGGCTTAG
* * ** *
10953495 GCATAGGGAGTTCATTCCATGTCTAA-ACCCCAG-CCGGA-CTGAGGGTTGTGGTAGCAGGATTG
1 GCATACGGAGTTCATTCCATGTCTAAGA--TCAGACCGGATC-GAGGGTTACGGCAGCAGGATT-
* ** * * *
10953557 GA-TGCACGCAGAGGGGGACTGGGCCAATCCCCGGCTTGCGCATTGTGCCTCTCCAGCCGGCTTA
62 GACAGCACATAG-GGGGGACTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGCTTA
* ** * *
10953621 GCACCCGCACGCTTGTTTCGTATGTTGACTTAT
126 GCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAG
* * *
10953654 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACTGGATCGAGGGTTACGACAGCAAGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATTGAC
* ** * *
10953718 AGCACATAGGGGGGACCGGGTTGATCCCCGACTTGCACATTCTGCCTCTCC-GACCGGCTGAGCG
65 AGCACATAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAG-CCGGCTTAGCG
* * *
10953782 CCCTCACG-TTCATTTTGTGGGTTGGCTTAG
129 CCCGCACGCTT-GTTTCGTGGGTTGGCTTAG
10953812 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
10953839 CATACGGAGT
Statistics
Matches: 275, Mismatches: 51, Indels: 34
0.76 0.14 0.09
Matches are distributed among these distances:
155 5 0.02
156 46 0.17
157 12 0.04
158 142 0.52
159 65 0.24
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATTGACA
GCACATAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGCTTAGCGCC
CGCACGCTTGTTTCGTGGGTTGGCTTAG
Found at i:10954996 original size:158 final size:158
Alignment explanation
Indices: 10954589--10954998 Score: 416
Period size: 159 Copynumber: 2.6 Consensus size: 158
10954579 GCCGATCCCA
* * * * *
10954589 GGCTTACGTATTCTGCCTCTCCGACCGACTGAGCACCTGCACGCCCGTTTCGTGGGTTGGCTTAG
1 GGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAG
* *** *
10954654 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAATCGAGGGTTGTGGCAGCGGGATCGACA
66 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAATCGAGGGTTGCAACAGCAGGATCGACA
* *
10954719 GCACATAGAAGAGGACCGAGCCAATCCTC
131 GCACACAG-AGAGGACAGAGCCAATCCTC
* * * * *
10954748 GGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTCA
1 GGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTT-A
* ** * * * * *
10954813 -GCATACGGAGTTCTTTCCCA-GTCTAAG-ATCGGATCGGATTGAGGGTTGCAACAGTAGGATCG
65 GGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGAATCGAGGGTTGCAACAGCAGGATCG
* * * ** *
10954875 ATAGCACACAG-GGGGAATCAG-GTCGGTCCTT
128 ACAGCACACAGAGAGG-A-CAGAGCCAATCCTC
* * *
10954906 GGCTTGTGCATTCTGCCTCTCCGATCGATTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
1 GGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAG
*
10954971 GCATACGGAGTTCATTCCATATCTAAGC
66 GCATACGGAGTTCATTCCATGTCTAAGC
10954999 ATACGGAGTT
Statistics
Matches: 202, Mismatches: 41, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
157 7 0.03
158 85 0.42
159 106 0.52
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (158 bp):
GGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAG
GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAATCGAGGGTTGCAACAGCAGGATCGACA
GCACACAGAGAGGACAGAGCCAATCCTC
Found at i:10955198 original size:26 final size:26
Alignment explanation
Indices: 10955168--10955226 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
10955158 GTTGACTTAG
*
10955168 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
10955194 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
10955220 -CAT-CAGA
1 GCATACAGA
10955227 CCAGACCAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 23 0.79
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:10955496 original size:158 final size:159
Alignment explanation
Indices: 10955191--10955696 Score: 466
Period size: 158 Copynumber: 3.2 Consensus size: 159
10955181 ATCCCCAGTC
** * * ** * * *
10955191 TAAGCATATAGAGTTCATTCCCA-GTCTAA-CATCAGACCAGACCAAGGGTTACGGTAGCAGGAT
1 TAAGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAACAAGAT
* * * * * * * *
10955254 CGGCAGCATGCAGTGGGGATCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCGGGTCGGCTAA
65 CGACAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTAA
*
10955319 GCACCCGCACGCTCGTTTCGTGGGTTGGCT
130 GCGCCCGCACGCTCGTTTCGTGGGTTGGCT
* * * * *
10955349 TAAGCGTA-GGAGTTCATTCCATGTCTAAGCCCCAG-TCAGACCGAGGTTTGTGGCAGCAAGATC
1 TAAGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAACAAGATC
* * * *
10955412 GACAGCACGCAGAGGGGGACCAGGTCGATCCCCGGCTTGCGCATTGTGCCTCTCCAATCGGCTCA
66 GACAGCACGCAG-GGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTAA
* * * * *
10955477 GTGCCCGAACGTTCATTTCGTGGGTTGACT
130 GCGCCCGCACGCTCGTTTCGTGGGTTGGCT
* * *** * *
10955507 TAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATTGGACCAGACCGAGGGTTGTGGCAATAGGAT
1 TAAGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAACAAGAT
* * * ** * * * * * * *
10955570 CGACATCATGCAGGGGGGACCTGGCCGATCTGCGGTTTACGCATTCTGCTTCTCTGACCAGCTGA
65 CGACAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTAA
*
10955635 GCGCCCGCATGCTCGTTTCGTGGGTTGGCT
130 GCGCCCGCACGCTCGTTTCGTGGGTTGGCT
*
10955665 TAAGCATATGGAGTTCATTCCATGTCTAAGCA
1 TAAGCATACGGAGTTCATTCCATGTCTAAGCA
10955697 TACGGAGTTC
Statistics
Matches: 276, Mismatches: 64, Indels: 15
0.78 0.18 0.04
Matches are distributed among these distances:
156 3 0.01
157 49 0.18
158 171 0.62
159 50 0.18
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
TAAGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAACAAGATC
GACAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTAAG
CGCCCGCACGCTCGTTTCGTGGGTTGGCT
Found at i:10955694 original size:26 final size:26
Alignment explanation
Indices: 10955665--10955720 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
10955655 TGGGTTGGCT
*
10955665 TAAGCATATGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
10955691 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
10955717 TAAG
1 TAAG
10955721 ATTGGATCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:10955904 original size:26 final size:26
Alignment explanation
Indices: 10955874--10955928 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
10955864 ATGGGTTGAC
*
10955874 CTAGGCATATGGAGTTCATCCCCAGT
1 CTAGGCATACGGAGTTCATCCCCAGT
*
10955900 CTAGGCATACGGAGTTCATTCCCAGT
1 CTAGGCATACGGAGTTCATCCCCAGT
10955926 CTA
1 CTA
10955929 AGCAGCATGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (26 bp):
CTAGGCATACGGAGTTCATCCCCAGT
Found at i:10956201 original size:26 final size:26
Alignment explanation
Indices: 10956165--10956217 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10956155 TTTGGCTTAG
10956165 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
10956191 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10956217 G
1 G
10956218 AGTTTTTGCG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10956570 original size:26 final size:26
Alignment explanation
Indices: 10956541--10956593 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10956531 GTTGACTTAG
*
10956541 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
10956567 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
10956593 G
1 G
10956594 ATCAGACAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:10957375 original size:13 final size:13
Alignment explanation
Indices: 10957357--10957383 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
10957347 TGCGCATTAT
10957357 GCCTCTCCGGTCG
1 GCCTCTCCGGTCG
10957370 GCCTCTCCGGTCG
1 GCCTCTCCGGTCG
10957383 G
1 G
10957384 TTGAGCGCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.44, G:0.33, T:0.22
Consensus pattern (13 bp):
GCCTCTCCGGTCG
Found at i:10957457 original size:26 final size:26
Alignment explanation
Indices: 10957421--10957475 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
10957411 ATTGACTTAG
10957421 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
10957447 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
10957473 GCA
1 GCA
10957476 GCATGTAGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:10957754 original size:26 final size:26
Alignment explanation
Indices: 10957718--10957768 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
10957708 TGGCTTAGGT
10957718 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
10957744 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
10957769 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:10959104 original size:158 final size:157
Alignment explanation
Indices: 10958804--10959446 Score: 425
Period size: 158 Copynumber: 4.0 Consensus size: 157
10958794 ATGGGATCGG
* * * * * * * *
10958804 CAGCATGCAGAGGGGGACCGAGCCAATCCCTGGCTTGCGCATTATGCCTCTCCGATCGGCTTAAC
1 CAGCACGCAGAAGGGGACCGGGCCGATCCTTGGCTTGCACATTATGCCTCTCCGATCGGC-CAGC
* ** * * * *
10958869 GCCCGCACGCTCGTTTTATGGGTTGACTCAGGCATACGGAGTTAATTCCCAGTCTAAGATCAGAC
65 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGACTAAGACCAGAC
* * **
10958934 CGAACTGAGGGTTGCGGTAGCAGGATTGA
129 CGAACCGAGGGTTGCGGCAGCAGGACCGA
* * *
10958963 CAGCACGCA-AAGGGGACCGGGCCGATCCTTGGCTTGCACATTCTGCCTCTCCGGTCGACCGAGC
1 CAGCACGCAGAAGGGGACCGGGCCGATCCTTGGCTTGCACATTATGCCTCTCCGATCGGCC-AGC
* * * *
10959027 GCCCGCATGCCCATTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGACTAAGCCCCAG-
65 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GACTAAG-ACCAGA
* * *
10959091 CCGGACCGAGGGTTGTGGCAGCGGGACCGA
128 CCGAACCGAGGGTTGCGGCAGCAGGACCGA
* * ** ** * * * * *
10959121 CAGCACGTAGAGGGGGA-TAGGCCGATCCTCAGCTTACTCATTATGCCTCTTCGATTGGCTCAGT
1 CAGCACGCAGAAGGGGACCGGGCCGATCCTTGGCTTGCACATTATGCCTCTCCGATCGGC-CAGC
* * ** * * *
10959185 GCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTGTAAGATCGGAT
65 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGACTAAGACCAGAC
* * * *
10959250 CGGACCTAGGGTTGCGACAGCAGGATCGA
129 CGAACCGAGGGTTGCGGCAGCAGGACCGA
* * * * *
10959279 CAGCAGGATCGACAGCACGTAGGGGGTGACTGGGCCGGTCC-TGGCTTGCGCATTTTGCCTCTTC
1 CAGC---A-CG-CAG-A---A--GGG-GACCGGGCCGATCCTTGGCTTGCACATTATGCCTCTCC
* * * * * * * *
10959343 G-GCAGGCTGAGCGCCTGCAAGCTCATTTCGTGGGTTGGCTTAGGCATATGAAATTCATTCCAAG
54 GATC-GGC-CAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-AG
* * * *
10959407 CCTAAGATCAGACC-AGACCGAGGGTTGCGACAGTAGGACC
116 ACTAAGACCAGACCGA-ACCGAGGGTTGCGGCAGCAGGACC
10959447 AGCATTAGGA
Statistics
Matches: 373, Mismatches: 88, Indels: 35
0.75 0.18 0.07
Matches are distributed among these distances:
157 5 0.01
158 228 0.61
159 21 0.06
161 1 0.00
162 2 0.01
163 2 0.01
164 1 0.00
169 5 0.01
170 99 0.27
171 9 0.02
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (157 bp):
CAGCACGCAGAAGGGGACCGGGCCGATCCTTGGCTTGCACATTATGCCTCTCCGATCGGCCAGCG
CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGACTAAGACCAGACCG
AACCGAGGGTTGCGGCAGCAGGACCGA
Found at i:10959281 original size:12 final size:12
Alignment explanation
Indices: 10959264--10959295 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
10959254 CCTAGGGTTG
10959264 CGACAGCAGGAT
1 CGACAGCAGGAT
10959276 CGACAGCAGGAT
1 CGACAGCAGGAT
10959288 CGACAGCA
1 CGACAGCA
10959296 CGTAGGGGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.34, C:0.28, G:0.31, T:0.06
Consensus pattern (12 bp):
CGACAGCAGGAT
Found at i:10959977 original size:159 final size:157
Alignment explanation
Indices: 10959582--10959969 Score: 370
Period size: 159 Copynumber: 2.5 Consensus size: 157
10959572 CCTAATCTAA
* * * * *
10959582 GCATATAGAGTTCATTCCCAGTCTAAGATCAGA-TCAGACCGAGGGTTACGACAGTAGGATCGGT
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGA-ATCGAGGGTTATGACAGTAGGATCGGC
* * * * * *
10959646 AGCACGTAAGGGGACCGAGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGGGCC
65 AGCACGTAAGGGGACCGAGTCGATCCCCGACGTGCGCATTATGCCTCTCCGACCAGCTCAGCGCC
* *
10959711 CGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CGAACGCCCGTTTCGTGGGTTGACTTAG
* * ** * * * * * * *
10959739 GCATAGGGAGTTCATT-CCATGTATAAGCCCTAGCCAGACT-GAGGGTTGTGCCAGTGGGACCGG
1 GCATATGGAGTTCATTCCCA-GTCTAAGATC-AGACTGAATCGAGGGTTATGACAGTAGGATCGG
* * * * * * *
10959802 CAGCATGCAAAGGGGGATCGGGTCGATCCCTGACGTGCGCATTATGCCTCTCC-AGTCGGCTCAG
64 CAGCACG-TAA-GGGGACCGAGTCGATCCCCGACGTGCGCATTATGCCTCTCCGA-CCAGCTCAG
*
10959866 CGCCCGAACGCTCGTTTCGTGGGTTGACTTAG
126 CGCCCGAACGCCCGTTTCGTGGGTTGACTTAG
* * * *
10959898 GCATATGGAGTTCATTCCCAGTCTAAGATCAAACTGAATCGAGGGTTTTGGCAGTAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGAATCGAGGGTTATGACAGTAGGATCGGCA
10959963 GCACGTA
66 GCACGTA
10959970 GTTGGGGACT
Statistics
Matches: 176, Mismatches: 47, Indels: 15
0.74 0.20 0.06
Matches are distributed among these distances:
156 3 0.02
157 44 0.25
158 11 0.06
159 115 0.65
160 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGAATCGAGGGTTATGACAGTAGGATCGGCA
GCACGTAAGGGGACCGAGTCGATCCCCGACGTGCGCATTATGCCTCTCCGACCAGCTCAGCGCCC
GAACGCCCGTTTCGTGGGTTGACTTAG
Found at i:10960109 original size:26 final size:26
Alignment explanation
Indices: 10960053--10960109 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
10960043 GTTGGTTGGC
*
10960053 TTAAGCATACGGAGTTCATTCCATGT
1 TTAAGCATACAGAGTTCATTCCATGT
* *
10960079 CTAAGCATTCAGAGTTCATTCCCA-GT
1 TTAAGCATACAGAGTTCATT-CCATGT
10960105 TTAAG
1 TTAAG
10960110 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (26 bp):
TTAAGCATACAGAGTTCATTCCATGT
Found at i:10960459 original size:26 final size:26
Alignment explanation
Indices: 10960410--10960462 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10960400 GTTGGCTTAG
*
10960410 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
10960436 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
10960462 G
1 G
10960463 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:10960524 original size:353 final size:355
Alignment explanation
Indices: 10959880--10960632 Score: 858
Period size: 354 Copynumber: 2.1 Consensus size: 355
10959870 CGAACGCTCG
* *
10959880 TTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAACTGAATCGAGGGTT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGAATCGAAGGTT
*** * * * * * *
10959945 TTGGCAGTAGGATCGACAGCACGTAGTTGGGGACTGAGATGGTCCCCAGCTTGTGCATTCTGCCT
66 GCAGCAGTAGAATCGACAGCACGTAGTGGGGGACAGAGACGATCCCCAGCTTGCGCATTCTGCCT
* * * * *
10960010 CTCTGGCTAGCTGAGCGCCAGCAAACTCGTTTCGTTGGTTGGCTTAAGCATACGGAGTTCATTCC
131 CTCAGCCGAGCTGAGCGCCAGCAAACTCATTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCC
* * ** * * * *
10960075 ATGTCTAAGCATTCAGAGTTCATTCCCAGTTTAAGATTGGACCGGACTGATGGTTGCGGTAGCAG
196 ATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGATGATTGCAGCAACAG
** * * * *
10960140 AACCAACAGCAAGATCGGTAGCACGTAGGGGGGTCGA-GCTGATCCTCGACTTGCGCATTATGCC
261 AACCAACAGCAAGATCGACAGCACATAGGGGGGACCAGGCAGATCCTCGACTTGCGCATTATGCC
* * * *
10960204 TCTCAAACC-GATTTAGCACCCGTGCACTCA
326 TCTCAAACCAG-CTGAGCACCCATACACTCA
**
10960234 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGAATCGAAGGT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACT-GAATCGAAGGT
* *
10960298 TGCAGCAGTCA-AATCGACAGCACGTAG-GGGGGACCAG-GCCGATCCTCAGCTTGCGCATTCTG
65 TGCAGCAGT-AGAATCGACAGCACGTAGTGGGGGA-CAGAGACGATCCCCAGCTTGCGCATTCTG
* * ** *
10960360 CCTCTCCAGCCGA-CTGAGTGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
128 CCTCT-CAGCCGAGCTGAGCGCCAGCAAACTCATTTCGTGGGTTGGCTTAAGCATACGGAGTTCA
* *
10960424 TTTCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGA-GCATTGCAGC
192 TTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGATG-ATTGCAGC
* * * * * *
10960488 AACAGGACCAGCAGCAGGATCGACAGTACATAGGGGGGACCAGGCAGATCCTCGGCTTGCGTATT
256 AACAGAACCAACAGCAAGATCGACAGCACATAGGGGGGACCAGGCAGATCCTCGACTTGCGCATT
* ** * * *
10960553 TTGCCTCTCCGACCAGCTGAGCGCCCATACGCTCG
321 ATGCCTCTCAAACCAGCTGAGCACCCATACACTCA
*
10960588 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
10960633 CCCCAACCGA
Statistics
Matches: 333, Mismatches: 58, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
352 1 0.00
353 163 0.49
354 167 0.50
355 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.25
Consensus pattern (355 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGAATCGAAGGTT
GCAGCAGTAGAATCGACAGCACGTAGTGGGGGACAGAGACGATCCCCAGCTTGCGCATTCTGCCT
CTCAGCCGAGCTGAGCGCCAGCAAACTCATTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCC
ATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGATGATTGCAGCAACAG
AACCAACAGCAAGATCGACAGCACATAGGGGGGACCAGGCAGATCCTCGACTTGCGCATTATGCC
TCTCAAACCAGCTGAGCACCCATACACTCA
Found at i:10965796 original size:26 final size:26
Alignment explanation
Indices: 10965767--10965817 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
10965757 TGGCTTAGCC
10965767 ATACAGAGTTCATT-CCATGTCTAAGG
1 ATACAGAGTTCATTCCCA-GTCTAAGG
10965793 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
10965818 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGG
Found at i:10966087 original size:171 final size:171
Alignment explanation
Indices: 10965793--10966159 Score: 414
Period size: 171 Copynumber: 2.1 Consensus size: 171
10965783 ATGTCTAAGG
* * *
10965793 ATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGATAGTAGGACCAATAGC
1 ATACGGAGTTCATTCCCAGTCTAAGACCGAACCGGACCGAGGGTTACGATAGCAGGACCAATAGC
* * * * * *
10965858 AGGATCGACAGCACGTAAGGGGAGACCGGGCCGATCCCCGGCTTGCGTATTCTGCCTCTCTGGCC
66 AGGATCGACAGCACGTAAGGGGAGACCAGGCCGATCCCCGACTTACGCATTATGCCTCTCCGGCC
* * * *
10965923 GGCTGAGCGCCCATACGCTCGTTTCATTGGTTGGCTTAGGC
131 GACTGAGCGCCCATACGCACGTTTCATGGGTTGACTTAGGC
* * * ** * *
10965964 ATACGGAGTTCATT-CCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGTAGCAGGACCGATAG
1 ATACGGAGTTCATTCCCA-GTCTAAGACCGAACCGGACCGAGGGTTACGATAGCAGGACCAATAG
* * * * *
10966028 CGGGATCGACAGCACGTAGAGGGG-GACCAGGCTGATCTCTGACTTATGCATTATGCCTCTCCGG
65 CAGGATCGACAGCACGTA-AGGGGAGACCAGGCCGATCCCCGACTTACGCATTATGCCTCTCCGG
* * * *
10966092 CCGACTGAGTGCCCGTACGCACTTTTCGTGGGTTGACTTAGGC
129 CCGACTGAGCGCCCATACGCACGTTTCATGGGTTGACTTAGGC
* * *
10966135 ATACGTAGTTCATCCCCAGCCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
10966160 CATACGGAGT
Statistics
Matches: 161, Mismatches: 32, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
170 3 0.02
171 150 0.93
172 8 0.05
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (171 bp):
ATACGGAGTTCATTCCCAGTCTAAGACCGAACCGGACCGAGGGTTACGATAGCAGGACCAATAGC
AGGATCGACAGCACGTAAGGGGAGACCAGGCCGATCCCCGACTTACGCATTATGCCTCTCCGGCC
GACTGAGCGCCCATACGCACGTTTCATGGGTTGACTTAGGC
Found at i:10966649 original size:159 final size:156
Alignment explanation
Indices: 10966159--10966659 Score: 522
Period size: 158 Copynumber: 3.2 Consensus size: 156
10966149 CCCAGCCTAA
*
10966159 GCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAT
1 GCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAG
* * *
10966224 CATGCAGGGGGGACCAGG-CTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCTCC
66 CACGCAGGGGGGACCGGGTC-GAT-CCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCACC
* * *
10966288 GGCACGCCCATTTCGTGGGTTGGCTTAT
129 CGCACGCTCATTTCGTGGGTTGGCTTAG
* ** ** * * ** ** * *
10966316 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGTAGTGGGACCGGCA
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * * * * *
10966381 GCACGCAAAGAGGGACCGAGTCGATCCCAGGCTTG-GCATTATGCCT-TTCTGACTGGCTCAGCG
65 GCACGC-AGGGGGGACCGGGTCGATCCC-GGCTTGCGCATTCTGCCTCTCCGGTC-GGCTAAGCA
* * *
10966444 CCCGAACGCTCATTTCGTGGGTCGACTTAG
127 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** *
10966474 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATTGAGGGTTACGACAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
* * *
10966539 GCACGCAGGGGGGATCGGGTCGATCCTCGACATGCGCATTCTGCCTCTCCGGTCGGCTGAAGCAC
65 GCACGCAGGGGGGACCGGGTCGATCC-CGGCTTGCGCATTCTGCCTCTCCGGTCGGCT-AAGCAC
*
10966604 CCTCACGCTCATTTCGTGGGTTGGCTTAG
128 CCGCACGCTCATTTCGTGGGTTGGCTTAG
*
10966633 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
10966660 CATACAGAGT
Statistics
Matches: 267, Mismatches: 66, Indels: 20
0.76 0.19 0.06
Matches are distributed among these distances:
157 42 0.16
158 149 0.56
159 75 0.28
160 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAG
CACGCAGGGGGGACCGGGTCGATCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCACCCG
CACGCTCATTTCGTGGGTTGGCTTAG
Found at i:10966683 original size:26 final size:26
Alignment explanation
Indices: 10966633--10966685 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10966623 GTTGGCTTAG
*
10966633 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
10966659 GCATACAGAGTTCATTACCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
10966685 G
1 G
10966686 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:10967380 original size:26 final size:26
Alignment explanation
Indices: 10967330--10967382 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10967320 GTTGGCTTAG
*
10967330 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
10967356 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
10967382 G
1 G
10967383 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:10968485 original size:159 final size:157
Alignment explanation
Indices: 10968094--10968488 Score: 362
Period size: 159 Copynumber: 2.5 Consensus size: 157
10968084 TAAGCATGCA
* * * **
10968094 AAGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTGCGGCAACAGGATCGGTAGCACGTA
1 AAGTTCATTCCCAGTCTAAGATCAAATCAGATCGAGGGTTGTGGCAGCAGGATCGGTAGCACCAA
* * * ** * * *
10968159 GGAGGGA-CCAGGCCGATCCCCGGTTTGTGCATTCTGCCTCTTCAACCGGCTGAGTGCCCGCACG
66 GG-GGGATCGA-GCCGATCCCCAGCTTACGCATTATGCCTCTTCAACCGGCTCAGCGCCCGCACG
* * *
10968223 CTCGTTTCATCGATTGGCTAAGGCATAGG
129 CTCATTTCATCGATTGACTAAGGCATACG
* ** * * * * * *
10968252 GAGTTCATT-CCACGTCTAAGCCCTAACCAGATCGAGGGTTGTGGCAGCGGGATTGGCAGGACGC
1 AAGTTCATTCCCA-GTCTAAGATCAAATCAGATCGAGGGTTGTGGCAGCAGGATCGGTAGCAC-C
* * *** * * *
10968316 AGAGGGGGATCGAGCCGATCCCTAGCTTACGCGTTATGCCTCTTCTGTCGGTTCAGCGCTCGTAC
64 A-AGGGGGATCGAGCCGATCCCCAGCTTACGCATTATGCCTCTTCAACCGGCTCAGCGCCCGCAC
* * * *
10968381 GCTCATTTCATGGGTTGACTTAGGCATTCG
128 GCTCATTTCATCGATTGACTAAGGCATACG
* *
10968411 AAGTTCATTCCCAGTCTAAGATCAAATCAGATCGAGGGTTGTGGTAGCAGGATCGATAGCACACA
1 AAGTTCATTCCCAGTCTAAGATCAAATCAGATCGAGGGTTGTGGCAGCAGGATCGGTAGCAC-CA
10968476 AGGGTGGATCGAG
65 AGGG-GGATCGAG
10968489 TCGGTCCTCG
Statistics
Matches: 182, Mismatches: 49, Indels: 11
0.75 0.20 0.05
Matches are distributed among these distances:
157 3 0.02
158 50 0.27
159 121 0.66
160 8 0.04
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.24
Consensus pattern (157 bp):
AAGTTCATTCCCAGTCTAAGATCAAATCAGATCGAGGGTTGTGGCAGCAGGATCGGTAGCACCAA
GGGGGATCGAGCCGATCCCCAGCTTACGCATTATGCCTCTTCAACCGGCTCAGCGCCCGCACGCT
CATTTCATCGATTGACTAAGGCATACG
Found at i:10968639 original size:26 final size:26
Alignment explanation
Indices: 10968565--10968632 Score: 127
Period size: 26 Copynumber: 2.6 Consensus size: 26
10968555 TGGCTTAGCC
10968565 ATACGGAGTTCATTCCATGTCTAGGG
1 ATACGGAGTTCATTCCATGTCTAGGG
10968591 ATACGGAGTTCATTCCATGTCTAGGG
1 ATACGGAGTTCATTCCATGTCTAGGG
*
10968617 ATACGAAGTTCATTCC
1 ATACGGAGTTCATTCC
10968633 CAGTCTAAGA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATGTCTAGGG
Found at i:10969417 original size:158 final size:158
Alignment explanation
Indices: 10968885--10969917 Score: 743
Period size: 158 Copynumber: 6.6 Consensus size: 158
10968875 GATCGAAACT
* * * * ** * *
10968885 GATCCCTGGCTTGCGCATTATGCCTCTCCGGCCAGCTGAGTGCCCGTACGCTCTTTTCGTGGGTT
1 GATCCCCGGCTTACGCATTCTACCTCTCCGGCTGGCTGAGCGCCCGTACGCTCATTTCGTGGGTT
* * * * *
10968950 GACTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCAGATCAGATC-GATGGTTGCGGTAGCAG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGAACTGGTGGTTGTGATAGCAG
* * ** **
10969014 GATCGGCAACACGCAGGGGGGATTGGGCC
130 GATCGACAGCACAAAGGGGGGATCAGGCC
* * * * ** * * *
10969043 GATCCCTGGTTTGCGCATTCTGCCTCTCCGG-TCGGCTGAGCGCCCACATGCCCATTTCATGGGT
1 GATCCCCGGCTTACGCATTCTACCTCTCCGGCT-GGCTGAGCGCCCGTACGCTCATTTCGTGGGT
* * * * * * *
10969107 TGGCTTAGGCATAGGGAGTTTATT-CCATGTCTAA-ACCCCAGTCGGATC-GAGT-GTTGTG---
65 TGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGA--TCAGACAGAACTG-GTGGTTGTGATA
* * ** * * *
10969165 GCA--TTCGGCAGCACGCAGAGGAGGACCAGGTC
126 GCAGGATCGACAGCACAAAG-GGGGGATCAGGCC
** * * * * * * * * *
10969197 GATCCTTGGCTTACGCATTATGCCTCTTCGGCTAGCTCAACGCCTGCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTACGCATTCTACCTCTCCGGCTGGCTGAGCGCCCGTACGCTCATTTCGTGGGTT
10969262 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGAACTGGTGGTTGTGATAGCAGG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGAACTGGTGGTTGTGATAGCAGG
*
10969327 ATCGACAGCACAAAGGGGGGATCAGGTC
131 ATCGACAGCACAAAGGGGGGATCAGGCC
** * ** * * * *
10969355 GATCCCCGGCTTGTGCATTCTACCTTTTTGGTTGGCTGAGCGCTCGTACGCTCGTTTTGTGGGTT
1 GATCCCCGGCTTACGCATTCTACCTCTCCGGCTGGCTGAGCGCCCGTACGCTCATTTCGTGGGTT
* * *
10969420 GACTTAGGCATACGGAGTGCATTCCCAGTCTAAGATCAGATCAG-ACTGATGGTTGCGATAGCAG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGAACTGGTGGTTGTGATAGCAG
** * * **
10969484 GATCCG-CAGCACGCATGAGGGATTGGGCC
130 GAT-CGACAGCACAAAGGGGGGATCAGGCC
* * * * ** * *
10969513 GATCCTCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACCCACATGCCCATTTCGTGGGTT
1 GATCCCCGGCTTACGCATTCTACCTCTCCGGCTGGCTGAGCGCCCGTACGCTCATTTCGTGGGTT
* * ** * * * *
10969578 GGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCA-AATTAAGT-GTTGTGGCATC
66 GACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACAGAACT-GGTGGTTGT-G-ATA
* ** *
10969640 G-A-GATCGGCAGCACGCAGAGGGGGACCAGGCC
126 GCAGGATCGACAGCACAAAG-GGGGGATCAGGCC
** * * * * ** * *
10969672 GATCCTTGGCTTACGCATTATGCCTCTCCGGCTAGCTCAATGCCCGTACACTCATTTCATGGGTT
1 GATCCCCGGCTTACGCATTCTACCTCTCCGGCTGGCTGAGCGCCCGTACGCTCATTTCGTGGGTT
* *
10969737 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAAGACAGAACTGGGGGTTGTGATAGCAGG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGAACTGGTGGTTGTGATAGCAGG
10969802 ATCGACAGCACAAAGGGGGGATCAGGCC
131 ATCGACAGCACAAAGGGGGGATCAGGCC
* * * * * ** * * * **
10969830 GATCCCCGACTTGCGCATTCTACCTCTCCGACCGACCAAGTGCCCGCACGCTCGTTTAATGGGTT
1 GATCCCCGGCTTACGCATTCTACCTCTCCGGCTGGCTGAGCGCCCGTACGCTCATTTCGTGGGTT
**
10969895 GGTTTAGGCATACGGAGTTCATT
66 GACTTAGGCATACGGAGTTCATT
10969918 TCATGTCTAA
Statistics
Matches: 685, Mismatches: 159, Indels: 62
0.76 0.18 0.07
Matches are distributed among these distances:
153 22 0.03
154 90 0.13
155 8 0.01
157 15 0.02
158 409 0.60
159 135 0.20
160 6 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
GATCCCCGGCTTACGCATTCTACCTCTCCGGCTGGCTGAGCGCCCGTACGCTCATTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGAACTGGTGGTTGTGATAGCAGG
ATCGACAGCACAAAGGGGGGATCAGGCC
Found at i:10969883 original size:475 final size:470
Alignment explanation
Indices: 10968923--10969917 Score: 1465
Period size: 475 Copynumber: 2.1 Consensus size: 470
10968913 CGGCCAGCTG
*
10968923 AGTGCCCGTACGCTC-TTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGATC
1 AGTGCCCGTACGCTCGTTTT-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * *
10968987 AGATCAGATCGATGGTTGCGGTAGCAGGATCGGCAACACGCAGGGGGGATTGGGCCGATCCCTGG
65 AGATCAGATCGATGGTTGCGATAGCAGGATCCGCAACACGCAGGAGGGATTGGGCCGATCCCTGG
* * * *
10969052 TTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCACATGCCCATTTCATGGGTTGGCTTAGGC
130 CTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACCCACATGCCCATTTCATGGGTTGGCTTAGGC
* ** *
10969117 ATAGGGAGTTTATTCCATGTCTAAACCCCAGTCGGATCGAGTGTTGTGGCATTCGGCAGCACGCA
195 ATAGGGAGTTCATTCCATGTCTAAACCCCAGTCAAATCAAGTGTTGTGGCATTCGGCAGCACGCA
* * * *
10969182 GAGGAGGACCAGGTCGATCCTTGGCTTACGCATTATGCCTCTTCGGCTAGCTCAACGCCTGCACG
260 GAGGAGGACCAGGCCGATCCTTGGCTTACGCATTATGCCTCTCCGGCTAGCTCAACGCCCGCACA
* * * *
10969247 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGAACTGGT
325 CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAAGACAGAACTGGG
* * *
10969312 GGTTGTGATAGCAGGATCGACAGCACAAAGGGGGGATCAGGTCGATCCCCGGCTTGTGCATTCTA
390 GGTTGTGATAGCAGGATCGACAGCACAAAGGGGGGATCAGGCCGATCCCCGACTTGCGCATTCTA
* ** *** * **
10969377 CCTTTTTGGTTGGCTG
455 CCTCTCCGACCGACCA
* * *
10969393 AGCGCTCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTGCATTCCCAGTCTAAGATCA
1 AGTGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* *
10969458 GATCAGA-CTGATGGTTGCGATAGCAGGATCCGCAGCACGCATGAGGGATTGGGCCGAT-CCTCG
66 GATCAGATC-GATGGTTGCGATAGCAGGATCCGCAACACGCAGGAGGGATTGGGCCGATCCCT-G
*
10969521 GCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACCCACATGCCCATTTCGTGGGTTGGCTTAGG
129 GCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCACCCACATGCCCATTTCATGGGTTGGCTTAGG
* *
10969586 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAAATTAAGTGTTGTGGCATCGAGATCGGCAG
194 CATAGGGAGTTCATTCCATGTCTAAACCCCAGTCAAATCAAGTGTTGTGGCAT-----TCGGCAG
* *
10969651 CACGCAGAGGGGGACCAGGCCGATCCTTGGCTTACGCATTATGCCTCTCCGGCTAGCTCAATGCC
254 CACGCAGAGGAGGACCAGGCCGATCCTTGGCTTACGCATTATGCCTCTCCGGCTAGCTCAACGCC
*
10969716 CGTACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAAGACAGA
319 CGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAAGACAGA
10969781 ACTGGGGGTTGTGATAGCAGGATCGACAGCACAAAGGGGGGATCAGGCCGATCCCCGACTTGCGC
384 ACTGGGGGTTGTGATAGCAGGATCGACAGCACAAAGGGGGGATCAGGCCGATCCCCGACTTGCGC
10969846 ATTCTACCTCTCCGACCGACCA
449 ATTCTACCTCTCCGACCGACCA
* ** **
10969868 AGTGCCCGCACGCTCGTTTAATGGGTTGGTTTAGGCATACGGAGTTCATT
1 AGTGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATT
10969918 TCATGTCTAA
Statistics
Matches: 466, Mismatches: 51, Indels: 11
0.88 0.10 0.02
Matches are distributed among these distances:
469 4 0.01
470 215 0.46
471 4 0.01
475 243 0.52
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (470 bp):
AGTGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
GATCAGATCGATGGTTGCGATAGCAGGATCCGCAACACGCAGGAGGGATTGGGCCGATCCCTGGC
TTACGCATTCTGCCTCTCCGGCCGGCTGAGCACCCACATGCCCATTTCATGGGTTGGCTTAGGCA
TAGGGAGTTCATTCCATGTCTAAACCCCAGTCAAATCAAGTGTTGTGGCATTCGGCAGCACGCAG
AGGAGGACCAGGCCGATCCTTGGCTTACGCATTATGCCTCTCCGGCTAGCTCAACGCCCGCACAC
TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAAGACAGAACTGGGG
GTTGTGATAGCAGGATCGACAGCACAAAGGGGGGATCAGGCCGATCCCCGACTTGCGCATTCTAC
CTCTCCGACCGACCA
Found at i:10970299 original size:26 final size:26
Alignment explanation
Indices: 10970269--10970321 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10970259 GTTGACTTAG
10970269 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
10970295 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
10970321 G
1 G
10970322 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:10970648 original size:26 final size:26
Alignment explanation
Indices: 10970599--10970651 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10970589 GTTGGCATAG
* **
10970599 GCATACGGAGTTCGTTCATTGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
10970625 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
10970651 G
1 G
10970652 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:10971361 original size:26 final size:25
Alignment explanation
Indices: 10971324--10971375 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 25
10971314 GTTGACTTAG
*
10971324 GCATACGAAGTTGATCCCCAGTCTAA
1 GCATACGAAGTTCAT-CCCAGTCTAA
10971350 GCATAC-AGAGTTCATCCCAGTCTAA
1 GCATACGA-AGTTCATCCCAGTCTAA
10971375 G
1 G
10971376 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (25 bp):
GCATACGAAGTTCATCCCAGTCTAA
Found at i:10972364 original size:26 final size:26
Alignment explanation
Indices: 10972334--10972386 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10972324 GATGACTTAG
*
10972334 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGCAGTTCATCCCCAGTCTAA
* *
10972360 GCATATGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATCCCCAGTCTAA
10972386 G
1 G
10972387 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTCATCCCCAGTCTAA
Found at i:10972653 original size:159 final size:157
Alignment explanation
Indices: 10972368--10972853 Score: 503
Period size: 159 Copynumber: 3.1 Consensus size: 157
10972358 AAGCATATGC
* * ** * *
10972368 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGGTCGGCAGCATGCAG
1 AGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAG
* * * * * *
10972433 GGGGGACCAGGCCAATCCCCGGCTTGCGTCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGC
65 AGGGGACCGGGCCGATCCCCGGCTTGCG-CATTCTGCCTCTCCGATCAGCTTAGCGCCCGCACGC
* * *
10972498 CCGTTTTGTGGGTTGGCTTAGGCATAGGG
129 TCGTTTCGTGGGTTGGCTTAGGCATACGG
* * *
10972527 AGTTCATTCCATGTCTAAGCTCCAG-CCAGACTGAGGGTTGTGGCAGC-GAGACCGATAGCACGC
1 AGTTCATTCCA-GTCTAAGAT-CAGACCAGACCGAGGGTTGTGGCAGCAG-GACCGACAGCACGC
* * * *
10972590 AGAAGGGGACCGGGCCGATCTCCGGCTTGCGCATTATGCCTCTTCGATCAGCTTAGCGTCCGCAC
63 AG-AGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCAGCTTAGCGCCCGCAC
* * *
10972655 GCTCGTTTCGTAGGTTGACTTATGCATACGG
127 GCTCGTTTCGTGGGTTGGCTTAGGCATACGG
** * * *
10972686 AGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG
1 AGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAG
* * ** * * * *
10972751 GGGGGA-CGGACCGATCCCCGGCTTGCAAATTCTGCCTCTCCG-GCCGATTGAGCGCCCGCGCGC
65 AGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCAGCTT-AGCGCCCGCACGC
* * *
10972814 TCGTTTCATGGGTCGGCTTAGGCATATGG
129 TCGTTTCGTGGGTTGGCTTAGGCATACGG
10972843 AGTTCATTCCA
1 AGTTCATTCCA
10972854 AGCCTACGCA
Statistics
Matches: 268, Mismatches: 51, Indels: 19
0.79 0.15 0.06
Matches are distributed among these distances:
156 7 0.03
157 72 0.27
158 10 0.04
159 148 0.55
160 31 0.12
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
AGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGA
GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCAGCTTAGCGCCCGCACGCTC
GTTTCGTGGGTTGGCTTAGGCATACGG
Found at i:10974062 original size:159 final size:156
Alignment explanation
Indices: 10973599--10974095 Score: 434
Period size: 159 Copynumber: 3.1 Consensus size: 156
10973589 TAAGTGTATA
* * * *
10973599 GAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTAC-GACAGCAGGATCGGTAGCACG
1 GAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCAG-CAGGAGGATCGATAGCACG
* * * * * * * *
10973662 CAGGGGGGACCGGGCCGATCTCTGGCTTGCGTATTCTGCCTCTCCGGCCGAATGAGCACCCGCAC
64 CAGGGGGGA-CGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGATGAGCGCCCGCAC
*
10973727 ACC-CATTTCGTGGGTTTGCTTAGGCATAGG
128 -CCTCATTTCGTGGG-TTGCTTAGGCATACG
** * * *
10973757 GAGTTCATTCCATGTCTAAGCCCCAG-CCGGACAGAGGGTTGTGGCAG-AGGGGGA-CGACAGCA
1 GAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGG-T-T-GCAGCAGGAGGATCGATAGCA
* * * * * * * *
10973819 TGCAGAGGGGGACGTGGTCGATCCCC-AGCTTGTGCATTATGGCTCTCCGGTCTGCTCAACGCCC
62 CGCAG-GGGGGACG-GGTCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGGTCGGATGAGCGCCC
* * * *
10973883 ACACACTCATTTTGTGGGTTGACTTAGGCATATG
124 GCACCCTCATTTCGTGGGTTG-CTTAGGCATACG
* *
10973917 GAGTTCATTCCCA-GTCTAAGATTAGACCGGACCGAGGGTTGCAGCAGGTGGATCGATAGCACGC
1 GAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGGAGGATCGATAGCACGC
* * *
10973981 AAGGGGGGATCGGGTCGGTCCCCGACTTACGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCAC
65 -AGGGGGGA-CGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGATGAGCGCCCGCAC
* * *
10974046 CCTCGTTTCATGGGTTGGCTTAGGCATACA
128 CCTCATTTCGTGGGTT-GCTTAGGCATACG
*
10974076 GAGTTTATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
10974096 CATACAGAGT
Statistics
Matches: 266, Mismatches: 53, Indels: 39
0.74 0.15 0.11
Matches are distributed among these distances:
157 7 0.03
158 36 0.14
159 116 0.44
160 102 0.38
161 4 0.02
162 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGGAGGATCGATAGCACGCA
GGGGGGACGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGATGAGCGCCCGCACCCT
CATTTCGTGGGTTGCTTAGGCATACG
Found at i:10974119 original size:26 final size:26
Alignment explanation
Indices: 10974069--10974121 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10974059 GTTGGCTTAG
* *
10974069 GCATACAGAGTTTATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
10974095 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
10974121 G
1 G
10974122 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:10974831 original size:159 final size:159
Alignment explanation
Indices: 10974402--10974970 Score: 361
Period size: 159 Copynumber: 3.6 Consensus size: 159
10974392 CAGCCGATTG
* * * * * * * *
10974402 AGCACCCGCACGCTCATTTCAAGGGTTGACTTAGGCACACGGAGTTCATCCCCACTCTAAGATCG
1 AGCACCAGCACACTCATTTCATGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGATCA
* * * * * * ** * *
10974467 GATCAGA-CTGAGGGTTGTGACAGCAGGATCGACAGTACGCA-AGGGGGACCAGGCCGATCCTCG
66 GACCAGATC-GAGGGTTGGGGCAGCAGGATCGACAGCACACAGGGGGGGACTGGGTCGATCCCCG
* * * * * *
10974530 GCTTGCGTATTCTGCCTCTCCGGCTGGTTG
130 ACTTACGCATTATGCCTCTCCGGCTGGCTC
* * ** * * *
10974560 AGCGCCTGCATGC-CTGGTTT-GTGGGTT-AGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG
1 AGCACCAGCA--CACTCATTTCATGGGTTGA-CTTAGGCATACGGAATTCATTCCCA-GTCTAAG
** ** * * * * * * ** *
10974621 CCCCAG-CTGGACCGGGGGTTGTGGCAGCGGGA-CTAGCAACACGTAGAGGGGGA-TGGAGTCGA
62 -ATCAGACCAGATCGAGGGTTGGGGCAGCAGGATCGA-CAGCACACAGGGGGGGACTGG-GTCGA
* ** * * *
10974683 TCCTCGACTTTTGCATTATGCCTTTTCGG-TCGGTTC
124 TCCCCGACTTACGCATTATGCCTCTCCGGCT-GGCTC
* * *
10974719 AGCACCCGCATGA-TCATTTCATGGGTTGACTTATGCATACGGAATTCATTCCCAGTCTAAGATC
1 AGCACCAGCA-CACTCATTTCATGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGATC
* * * *
10974783 GGATCAGA-CTGAGGGTTGGTGTAGCAGGATCGACAGCACACAGGGGGGGACTGGGTCGATCCCC
65 AGACCAGATC-GAGGGTTGGGGCAGCAGGATCGACAGCACACAGGGGGGGACTGGGTCGATCCCC
* *
10974847 GACTTACGCATTCTGCCTCTCCGGCTGGCTG
129 GACTTACGCATTATGCCTCTCCGGCTGGCTC
** * * * * *
10974878 AGCGTCAGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCA
1 AGCACCAGCACACTCATTTCATGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGATCA
10974943 GACCAGATCGAGGGTTGGGGCAGCAGGA
66 GACCAGATCGAGGGTTGGGGCAGCAGGA
10974971 CCAATAGTAG
Statistics
Matches: 308, Mismatches: 82, Indels: 41
0.71 0.19 0.10
Matches are distributed among these distances:
157 6 0.02
158 71 0.23
159 219 0.71
160 12 0.04
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (159 bp):
AGCACCAGCACACTCATTTCATGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGATCA
GACCAGATCGAGGGTTGGGGCAGCAGGATCGACAGCACACAGGGGGGGACTGGGTCGATCCCCGA
CTTACGCATTATGCCTCTCCGGCTGGCTC
Found at i:10975120 original size:169 final size:168
Alignment explanation
Indices: 10974804--10975266 Score: 540
Period size: 169 Copynumber: 2.7 Consensus size: 168
10974794 AGGGTTGGTG
* * * * *
10974804 TAGCAGGATCGACAGCACACAGGGGGGGACTGGGTCGATCCCCGACTTACGCATTCTGCCTCTCC
1 TAGCAGGATCGGCAGCACGCA--GGGGGAC-CGGTCGATCCCCGGCTTACGCATTCTGCCTCTTC
* * * * *
10974869 GGCTGGCTGAGCGTCAGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTCAGT
63 GGTTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCTCAGT
*
10974934 CTAAGATCAGACCAGATCGAGGGTTGGGGCAGCAGGACCAA
128 CTAAGACCAGACCAGATCGAGGGTTGGGGCAGCAGGACCAA
*
10974975 TAGTAGGATCGGCAGCACGTC-GGGGGACCAGGTCGATCCCCGGCTTACGCATTCTGCCTCTTCG
1 TAGCAGGATCGGCAGCACG-CAGGGGGACC-GGTCGATCCCCGGCTTACGCATTCTGCCTCTTCG
*
10975039 GTTGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC-CA-TA
64 GTTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCTCAGT-
* * * **
10975102 ACTAAGCCCCAG-CCAGATCGAGGGTTGTGGTAGCAGGACCGG
128 -CTAAG-ACCAGACCAGATCGAGGGTTGGGGCAGCAGGACCAA
* * * * * *
10975144 TAGCGGGATCGGTAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTTCGCATTATGCCTCTTC
1 TAGCAGGATCGGCAGCACGC--AGGGGGACCGGTC-GATCCCCGGCTTACGCATTCTGCCTCTTC
* * *
10975209 GGTCGAG-TGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
63 GGTTG-GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
10975267 CCCCGATCTA
Statistics
Matches: 253, Mismatches: 29, Indels: 20
0.84 0.10 0.07
Matches are distributed among these distances:
167 1 0.00
168 3 0.01
169 139 0.55
170 6 0.02
171 102 0.40
172 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.23
Consensus pattern (168 bp):
TAGCAGGATCGGCAGCACGCAGGGGGACCGGTCGATCCCCGGCTTACGCATTCTGCCTCTTCGGT
TGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTA
AGACCAGACCAGATCGAGGGTTGGGGCAGCAGGACCAA
Found at i:10976485 original size:26 final size:26
Alignment explanation
Indices: 10976449--10976501 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10976439 GTTGACTTTG
* * *
10976449 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTGATCCACAGTCTAA
*
10976475 GCATACAGAGTTGATTCACAGTCTAA
1 GCATACAGAGTTGATCCACAGTCTAA
10976501 G
1 G
10976502 ATCAAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTGATCCACAGTCTAA
Found at i:10976851 original size:158 final size:158
Alignment explanation
Indices: 10976511--10976857 Score: 381
Period size: 158 Copynumber: 2.2 Consensus size: 158
10976501 GATCAAACCG
* * * * * *
10976511 GACCGAAGGTTGCGGCAACAGGATCGGCAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCG
1 GACCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAAGGGGGACCAGGCCGATCCCCAGCTTGCG
* * * * * *
10976576 CATTTTGCCTTTCCGGCCCGCTGAGGGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
66 CATTATGCCTCTCCGACCCGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGG
* *
10976641 AGTTCATTCCACATCTAATCACTAGCCA
131 AGTTCATTCCACATCTAAGCACCAGCCA
* * ** ** * *
10976669 GACCGATGGTTTTGGCAGTGGGACC-GCAGCACGCAAAGGGGGACTGGGCCGATCCTCAGCTTGT
1 GACCGAGGGTTGTGGCAGCAGGACCGGCAGCACGC-AAGGGGGACCAGGCCGATCCCCAGCTTGC
* * * *
10976733 TCATTATGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
65 GCATTATGCCTCTCCGACCCGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACG
** * * *
10976798 GAGTTCATTCCATGTCTAAGCCCCAGTCG
130 GAGTTCATTCCACATCTAAGCACCAGCCA
* *
10976827 GACTGAGGGTTGTGGTAGCAGGACCGGCAGC
1 GACCGAGGGTTGTGGCAGCAGGACCGGCAGC
10976858 GGGATCGACT
Statistics
Matches: 151, Mismatches: 36, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
157 9 0.06
158 137 0.91
159 5 0.03
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.21
Consensus pattern (158 bp):
GACCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAAGGGGGACCAGGCCGATCCCCAGCTTGCG
CATTATGCCTCTCCGACCCGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGG
AGTTCATTCCACATCTAAGCACCAGCCA
Found at i:10977364 original size:159 final size:157
Alignment explanation
Indices: 10977001--10977438 Score: 378
Period size: 159 Copynumber: 2.7 Consensus size: 157
10976991 CCCAGTCTAA
*
10977001 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGAGGGTTGCGACAGCAGGATCGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-C-AGAGGGTTGCGACAGCAGGACCGC
* * * * * *
10977066 AGCACGCAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCAC
64 AGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCAGGCTCAACAC
* *
10977131 CCGCACGCTTGTTTCATGGGCTGACTTAG
129 CCGCACGCTCGTTTCATGGGCTAACTTAG
* * ** * * * * * *
10977160 GCATAGGGAGTTTATT-CCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACAGAGGGTTGCGACAGCAGGACC-G
* * * * *
10977223 CAGCACGTAGAGGGGGACCGGGTCGATCCCCGACTTGCGCATTATTCCTCTTCGGCCAGG-TCAA
63 CAGCACGCAG-GGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGG-CAGGCTCAA
* * * * * *
10977287 CGCCCGGATGCTCGTTTCGTGGGTTAACTTAT
126 CACCCGCACGCTCGTTTCATGGGCTAACTTAG
* * * **
10977319 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGTAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGACAGCAGGACCG-CA
* * * * * * * *
10977384 GCATGCAGTGCGGGACTAGGGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGGC
65 GCACGCAG-GGGGGAC-CGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGC
10977439 CGGTTGAGCT
Statistics
Matches: 216, Mismatches: 54, Indels: 18
0.75 0.19 0.06
Matches are distributed among these distances:
157 17 0.08
158 18 0.08
159 141 0.65
160 40 0.19
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGACAGCAGGACCGCAG
CACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCAGGCTCAACACCC
GCACGCTCGTTTCATGGGCTAACTTAG
Found at i:10977518 original size:26 final size:25
Alignment explanation
Indices: 10977479--10977528 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
10977469 GTTGGCCTAG
*
10977479 GCATACGAATTTCATTCCATGTCTAT
1 GCATACGAAGTTCATTCCA-GTCTAT
*
10977505 GCATACGGAGTTCATTCCAGTCTA
1 GCATACGAAGTTCATTCCAGTCTA
10977529 AGATTTTGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCAGTCTAT
Found at i:10978590 original size:159 final size:160
Alignment explanation
Indices: 10978228--10978721 Score: 523
Period size: 159 Copynumber: 3.1 Consensus size: 160
10978218 CCCAGTCTAA
* *
10978228 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGGTCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * *
10978293 GCACGT-AGGGGGGACCAAGCCGATCCTCGGCTTGCGCATTCTGCCTC-TCTGGCCGGCTGAACG
66 GCACGTAAGGGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCAGACTGGCTGAGCG
* *
10978356 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
131 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * ** * * * * *
10978386 GCATAGGGAGTTC-TTTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGTAGGACCGGT
1 GCATACGGAGTTCATTCCCA-GTCTAAGGTCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * *
10978450 AGCACGTAAAGGGGGACCGAGCCGATCCTCGGCTTACGCATTATGCCTCTTC-GATTGGCTCAGC
65 AGCACGTAAGGGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCAGACTGGCTGAGC
* * *
10978514 GCCCACACGCTCGTTTCGTGGGTTGACTTAT
130 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *** * * * *
10978545 GCATACAGAGTTCATTCCCAGTCTAAGGTTGGACCAGACCGAGGGTTACGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGGTCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * *
10978610 GCACGTAGGGGGGGACTG-GCCCAATCCCCGGCTTGCGCATTCTGCCTCTACAGCCT-GCTGAGC
66 GCACGTAAGGGGGGACCGAG-CCGATCCTCGGCTTGCGCATTCTGCCTCTTCAGACTGGCTGAGC
* *
10978673 GCCCGCATGCTCATTTCGTGGGTTGGCTTAG
130 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
10978704 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
10978722 ATGCCTAAGC
Statistics
Matches: 267, Mismatches: 63, Indels: 11
0.78 0.18 0.03
Matches are distributed among these distances:
157 5 0.02
158 53 0.20
159 200 0.75
160 9 0.03
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCCAGTCTAAGGTCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
GCACGTAAGGGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCAGACTGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:10979452 original size:26 final size:26
Alignment explanation
Indices: 10979423--10979475 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10979413 GTTGACTTAG
*
10979423 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
10979449 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
10979475 G
1 G
10979476 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:10979780 original size:159 final size:158
Alignment explanation
Indices: 10979449--10979939 Score: 421
Period size: 159 Copynumber: 3.1 Consensus size: 158
10979439 CCCAGTCTAA
* * * * * ** * *
10979449 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGAGTTGCGGCAATAGGATCGGCA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAAGATCGACA
* * * * ** * * * * * * * * ** *
10979514 GCACGCAG-GGGGATCGGGCTGATTCCCGGCTTGCG-ATTATGCTTTTCCGACTGGCTCAGTGCT
66 GCACGTAGACGAGACCAAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCGGAGCGCT
* *
10979577 CG-AACGCTCGTTTCGTGGGTTAACTTAT
131 CGCAA-GCTCGTTTCGTGGGTTGACTTAG
** * * *
10979605 GCATACAAAGTTCATTCCCAATCTAAGATCAAACCAGACTGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAAGATCGACA
* *** * * * *
10979670 GCACGTATTACGAGACTGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
66 GCACGTA-GACGAGACCAAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCGGAGCGC
*
10979735 TCGCAAGCTCATTTCGTGGGTTGACTTAG
130 TCGCAAGCTCGTTTCGTGGGTTGACTTAG
* * * *
10979764 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAAGATCGACA
** * * * * * *
10979829 GCACGTAGGGGGGACCAAGCCGGTCCCCGACTTGTGCATTTTGCCTCTCCGGTCGGCGGAGCGCC
66 GCACGTAGACGAGACCAAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCGGAGCGCT
* * * *
10979894 CGCACGCTTGTTTTGTGGGTTGGCTTAG
131 CGCAAGCTCGTTTCGTGGGTTGACTTAG
10979922 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
10979940 ATGTCTAAGC
Statistics
Matches: 270, Mismatches: 61, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
156 61 0.23
158 101 0.37
159 106 0.39
160 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAAGATCGACA
GCACGTAGACGAGACCAAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCGGAGCGCT
CGCAAGCTCGTTTCGTGGGTTGACTTAG
Found at i:10979946 original size:158 final size:159
Alignment explanation
Indices: 10979580--10979948 Score: 427
Period size: 158 Copynumber: 2.3 Consensus size: 159
10979570 CAGTGCTCGA
* * ** * *
10979580 ACGCTCGTTTCGTGGGTTAACTTATGCATACAAAGTTCATTCCCAATCTAAGATCAAACCAGACT
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACC
* * * *** * * *
10979645 GAGGGTTGTGGCAGCAGGATCGACAGCACGTATTACGAGACTGGGTCGATCCTCGGCTTGCGCAT
66 GAGGGTTGCGGCAGCAAGATCGACAGCACGTATGACGAGACCAAGCCGATCCCCGACTTGCGCAT
* *
10979710 TCTGCCTCTCCGGCCGGCTGAGCGCTCGC
131 TCTGCCTCTCCGGCCGGCGGAGCGCCCGC
* * * *
10979739 AAGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACC
* ** * * *
10979804 GAGGGTTGCGGCAGCAAGATCGATAGCACGTA-GGGGGGACCAAGCCGGTCCCCGACTTGTGCAT
66 GAGGGTTGCGGCAGCAAGATCGACAGCACGTATGACGAGACCAAGCCGATCCCCGACTTGCGCAT
* *
10979868 TTTGCCTCTCCGGTCGGCGGAGCGCCCGC
131 TCTGCCTCTCCGGCCGGCGGAGCGCCCGC
* * *
10979897 ACGCTTGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
10979949 CATACGGAGT
Statistics
Matches: 174, Mismatches: 35, Indels: 3
0.82 0.17 0.01
Matches are distributed among these distances:
157 3 0.02
158 87 0.50
159 84 0.48
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACC
GAGGGTTGCGGCAGCAAGATCGACAGCACGTATGACGAGACCAAGCCGATCCCCGACTTGCGCAT
TCTGCCTCTCCGGCCGGCGGAGCGCCCGC
Done.