Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 64 of 402
Found at i:10979958 original size:26 final size:26
Alignment explanation
Indices: 10979922--10979974 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10979912 GTTGGCTTAG
10979922 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
10979948 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10979974 G
1 G
10979975 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10980169 original size:26 final size:26
Alignment explanation
Indices: 10980118--10980170 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10980108 GTTGACTTAG
*
10980118 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* *
10980144 GCATACGGAGTTCATTCCTAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
10980170 G
1 G
10980171 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:10980172 original size:196 final size:196
Alignment explanation
Indices: 10979835--10980193 Score: 533
Period size: 196 Copynumber: 1.8 Consensus size: 196
10979825 GATAGCACGT
* ** * * * *
10979835 AGGGGGGACCAAGCCGGTCCCCGACTTGTGCATTTTGCCTCTCCGGTCGGCGGAGCGCCCGCACG
1 AGGGGGGACCAAGCCGATCCCCGACTTACGCATTCTACCTCTCCGGCCGACGGAGCGCCCGCACG
* * * *
10979900 CTTGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
66 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTC
* *
10979965 CCAGTCTAAGATCGGA-CTGGACCGAGGGTTGCGGTAGCAGGTCCAGTAGCAGGATCGGCAGCAT
131 CCAGCCTAAGATCGAATC-GGACCGAGGGTTGCGGTAGCAGGTCCAGTAGCAGGATCGGCAGCAT
10980029 AC
195 AC
* * *
10980031 AGGGGGGACCAGGCCGATCCCCGACTTACGCATTCTACCTCTCCGGCCGACTGAGCGCCCGCACT
1 AGGGGGGACCAAGCCGATCCCCGACTTACGCATTCTACCTCTCCGGCCGACGGAGCGCCCGCACG
10980096 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATT
66 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAAGCATACGGAGTTCATT
*
10980160 CCTAGCCTAAGATCGAATCGGACCGAGGGTTGCG
130 CCCAGCCTAAGATCGAATCGGACCGAGGGTTGCG
10980194 ACAGCAAAAT
Statistics
Matches: 144, Mismatches: 17, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
196 140 0.97
197 4 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (196 bp):
AGGGGGGACCAAGCCGATCCCCGACTTACGCATTCTACCTCTCCGGCCGACGGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTC
CCAGCCTAAGATCGAATCGGACCGAGGGTTGCGGTAGCAGGTCCAGTAGCAGGATCGGCAGCATA
C
Found at i:10981217 original size:26 final size:26
Alignment explanation
Indices: 10981181--10981233 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10981171 GTTGACTTAG
10981181 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
10981207 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
10981233 G
1 G
10981234 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:10981554 original size:26 final size:26
Alignment explanation
Indices: 10981524--10981576 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10981514 GTTGGCTTAG
10981524 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
10981550 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10981576 G
1 G
10981577 ATTCTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:10982280 original size:26 final size:26
Alignment explanation
Indices: 10982251--10982303 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10982241 GTTGACTTAG
10982251 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
10982277 GCATATGGAGTTCATTCCCAGTTTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
10982303 G
1 G
10982304 ATCGAACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:10982801 original size:159 final size:163
Alignment explanation
Indices: 10982571--10982950 Score: 385
Period size: 171 Copynumber: 2.3 Consensus size: 163
10982561 GCGCCTGCAT
* ** * * * *
10982571 GCTCATTTCGTGGGTTAACTTAGGCATATGTAGTTCATTCCCAGTCTAAGATCAGACCGGACTGA
1 GCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* *
10982636 GAGTTGC-A-A-CAGC-AGGATCGACAGCACCCAGGGGGGGACCGAGTCGATCC-CTGACTTATG
66 GAGTTGCAAGACCAGCAAGGATCGACAGCACCCAGGGGGGGACCGAGCCGATCCTC-GACTTACG
* * *
10982696 CATTCTGCCCCTCCGATCGACTGAGTGCCCGCAC
130 CATTCTACCCCTCCGACCGACTGAGGGCCCGCAC
* * *
10982730 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGA
1 GCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * * * * * *
10982795 GGGTTGCGATAGTTGGACCAGCAGTAGGATCGGCATCACGCTGGGGGGGATCGGGCCGATCCTCG
66 GAGTTGC-A-A----GACCAGCA--AGGATCGACAGCACCCAGGGGGGGACCGAGCCGATCCTCG
* * *
10982860 ACTTGCGCATTCTACCTCTCCGACCGATTGAGGGCCCGCAC
123 ACTTACGCATTCTACCCCTCCGACCGACTGAGGGCCCGCAC
* *
10982901 GCCCGTTTCGTGGGTTGGTTTAGGCATACGAAGTTCATT-CCATGTCTAAG
1 GCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCA-GTCTAAG
10982951 CCCTAGTCGA
Statistics
Matches: 180, Mismatches: 27, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
159 62 0.34
162 1 0.01
167 1 0.01
168 4 0.02
170 3 0.02
171 108 0.60
172 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (163 bp):
GCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
GAGTTGCAAGACCAGCAAGGATCGACAGCACCCAGGGGGGGACCGAGCCGATCCTCGACTTACGC
ATTCTACCCCTCCGACCGACTGAGGGCCCGCAC
Found at i:10983722 original size:26 final size:26
Alignment explanation
Indices: 10983671--10983723 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
10983661 GTTAGCTTAG
* **
10983671 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATACCTAA
10983697 GCATACAGAGTTCATTCCCA-ACCTAA
1 GCATACAGAGTTCATT-CCATACCTAA
10983723 G
1 G
10983724 ATCAAACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATACCTAA
Found at i:10984506 original size:26 final size:26
Alignment explanation
Indices: 10984470--10984522 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10984460 GTTAGCTTAG
10984470 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
10984496 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10984522 G
1 G
10984523 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10985238 original size:26 final size:26
Alignment explanation
Indices: 10985202--10985254 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10985192 GTTGACCCAG
10985202 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * * *
10985228 GCATATGGAGTTGATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
10985254 G
1 G
10985255 ATCCGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10985705 original size:25 final size:25
Alignment explanation
Indices: 10985676--10985734 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 25
10985666 GATTATTTCG
10985676 TGTCTAAGCATAC-GAGTTCATTCC
1 TGTCTAAGCATACGGAGTTCATTCC
10985700 ATGTCTAAGCATACGGAGTTCATTCC
1 -TGTCTAAGCATACGGAGTTCATTCC
10985726 TAGTCTAAG
1 T-GTCTAAG
10985735 ATCAGACCGG
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
25 14 0.44
26 18 0.56
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (25 bp):
TGTCTAAGCATACGGAGTTCATTCC
Found at i:10986823 original size:26 final size:26
Alignment explanation
Indices: 10986787--10986836 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
10986777 GTTGACTTAG
10986787 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
10986813 GCATATGGAGTTCATTCCTAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
10986837 GAGATCAGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:10987283 original size:26 final size:26
Alignment explanation
Indices: 10987248--10987313 Score: 107
Period size: 26 Copynumber: 2.5 Consensus size: 26
10987238 CTTAGGCATT
*
10987248 ATTCCATGTCTAAGCATACGGAGTTC
1 ATTCCATGTCTAAGCATACAGAGTTC
10987274 ATTCCATGTCTAAGCATACAGAGTTC
1 ATTCCATGTCTAAGCATACAGAGTTC
10987300 ATTCCCA-GTCTAAG
1 ATT-CCATGTCTAAG
10987314 ATTTTGAGCC
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 35 0.92
27 3 0.08
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (26 bp):
ATTCCATGTCTAAGCATACAGAGTTC
Found at i:10987996 original size:26 final size:26
Alignment explanation
Indices: 10987960--10988012 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10987950 GTTGACTTAG
*
10987960 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
10987986 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
10988012 G
1 G
10988013 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:10988288 original size:159 final size:158
Alignment explanation
Indices: 10988050--10988483 Score: 419
Period size: 159 Copynumber: 2.7 Consensus size: 158
10988040 CAAGACCACG
* * * * *
10988050 CAGGAGGGACCGGGCTGATCCTCGGCTTGTGCATTCTGGCTCTCCGG-CAGGCTGAGCGCCCGCA
1 CAGGTGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTC-GGCTGAGCGCCCGTA
* * ** * *
10988114 CGCCCGTTTCATGGGTTGGCTTAGGCATA-GTGAGTTCATTCCATGTCTAAGCCCCAGCCAGACC
65 CGCTCATTTTGTGGGTTGGCTTAGGCATACG-GAGTTCATTCCATGTCTAAGCCCCAACCAAACC
***
10988178 GAGGGTTGTGGTAGCAGGACCGACAGCACA
129 GAGGGTTGCCATAGCAGGACCGACAGCACA
* * *
10988208 CAGAG-GGAGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGTGCCCGT
1 CAG-GTGG-GACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGT
* * * * **** *
10988272 ACGCTCATTTTGTGGGTTGACTTTGGCGTACGGAGTTCAATCCCA-GTCTAAGATTGAACCAAAT
64 ACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTC-ATTCCATGTCTAAGCCCCAACCAAAC
** **
10988336 CGAGGGTTGCCATAGCAGGATTGACAGCATG
128 CGAGGGTTGCCATAGCAGGACCGACAGCACA
* * * * * * * *
10988367 CAGGTTGGGATCC-GGCCGGTCCCCAGCTTGCGCATTCTACCTCTCCGATCGACTGAACGTCCGT
1 CAGG-TGGGA-CCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGT
*
10988431 ACACTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
64 ACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
10988484 ATACGGAGTT
Statistics
Matches: 221, Mismatches: 46, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
158 11 0.05
159 199 0.90
160 11 0.05
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
CAGGTGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTAC
GCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCGA
GGGTTGCCATAGCAGGACCGACAGCACA
Found at i:10988492 original size:26 final size:26
Alignment explanation
Indices: 10988456--10988508 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10988446 GTTGGCTTAG
10988456 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
10988482 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
10988508 G
1 G
10988509 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10988862 original size:27 final size:26
Alignment explanation
Indices: 10988821--10988874 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
10988811 GTTGACTTAG
10988821 GCATACAGAGATCATCCCCTAGTCTAA
1 GCATACAGAGATCATCCCC-AGTCTAA
* * *
10988848 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGATCATCCCCAGTCTAA
10988874 G
1 G
10988875 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 8 0.33
27 16 0.67
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.24
Consensus pattern (26 bp):
GCATACAGAGATCATCCCCAGTCTAA
Found at i:10990465 original size:26 final size:26
Alignment explanation
Indices: 10990436--10990486 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
10990426 GTTGACTTAG
*
10990436 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
10990462 GCATATGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATCCCCAATCTA
10990487 TGATCAGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:10990966 original size:26 final size:25
Alignment explanation
Indices: 10990936--10990987 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
10990926 GTTGGCTTAG
*
10990936 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCA-GTCTAA
10990962 GCATACGAAGTTCATTCCAGTCTAA
1 GCATACGAAGTTCATTCCAGTCTAA
10990987 G
1 G
10990988 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCAGTCTAA
Found at i:10991344 original size:26 final size:26
Alignment explanation
Indices: 10991314--10991366 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
10991304 GTTGACTTAG
10991314 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
10991340 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
10991366 G
1 G
10991367 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:10991651 original size:159 final size:158
Alignment explanation
Indices: 10991378--10991873 Score: 428
Period size: 159 Copynumber: 3.1 Consensus size: 158
10991368 TCGGATCGGA
** * * * * * * * * **
10991378 TCGGATCGAGGGTTACGGTAGCAGGATCAATAGCACGTA-AGGGGATCGGGCCAATTCCTGGCTT
1 TCGGATCGAGGGTTGTGGTAGCAAGATCGACAGCACGCAGAGGGGACCGGGTCGATCCCCAGCTT
* * * * * * * * *
10991442 GCACATTCTGCCTCTCCGTCCAACTGAGCGCCCGCACG-TCCGTTTCGTGGGTTGGCTTAGGCAT
66 ACGCATTATGCATCTCCGACCGACTCAGCACCCGCACGCT-CATTTCGTGGGTTGGCTTAGGCAT
*
10991506 AGGGAGTTCATTCCATGTCTAAGCCCCAG
130 ACGGAGTTCATTCCATGTCTAAGCCCCAG
** ** *
10991535 TCGGATCGAGGGTTGTGGTAGCGGGAGT-GACAGCACGCAGTAGGGGATTGGGTCGATCCCCGGC
1 TCGGATCGAGGGTTGTGGTAGCAAGA-TCGACAGCACGCAG-AGGGGACCGGGTCGATCCCCAGC
* * * * *
10991599 TTACGCATTATGCATCTCCGATCGACTCAGCGCCCGTACGCTCATTTTGTGGGTTGACTTAGGCA
64 TTACGCATTATGCATCTCCGACCGACTCAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCA
* ***
10991664 TACAGAGTTCATTCCCA-GTCTAA-AATCAG
129 TACGGAGTTCATT-CCATGTCTAAGCCCCAG
* ** *
10991693 ATCAGATCGAGGGTTGCAGCAGCAAGATCGACAGCACGCAGAGGGGACCGGGTCGATCCCCAGCT
1 -TCGGATCGAGGGTTGTGGTAGCAAGATCGACAGCACGCAGAGGGGACCGGGTCGATCCCCAGCT
** * * * * * *
10991758 TGTGCATTCTGCCTCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTA-GCAT
65 TACGCATTATGCATCTCCGACCGACTCAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAT
* *
10991822 ACGGAGTTTATTCCGTGTCTAAGCCCCAG
130 ACGGAGTTCATTCCATGTCTAAGCCCCAG
* * *
10991851 CCGGACCGAGGGTTGTGATAGCA
1 TCGGATCGAGGGTTGTGGTAGCA
10991874 GGATTGGTAG
Statistics
Matches: 267, Mismatches: 63, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
156 2 0.01
157 67 0.25
158 76 0.28
159 118 0.44
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
TCGGATCGAGGGTTGTGGTAGCAAGATCGACAGCACGCAGAGGGGACCGGGTCGATCCCCAGCTT
ACGCATTATGCATCTCCGACCGACTCAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA
CGGAGTTCATTCCATGTCTAAGCCCCAG
Found at i:10992039 original size:26 final size:26
Alignment explanation
Indices: 10992001--10992053 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10991991 GTTGGCTTAG
* * *
10992001 GCATATGGCGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
10992027 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
10992053 G
1 G
10992054 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:10992302 original size:683 final size:685
Alignment explanation
Indices: 10991060--10992307 Score: 1595
Period size: 683 Copynumber: 1.8 Consensus size: 685
10991050 GATCGGGCCA
* * * * * *
10991060 ATCCCCCGCTTGTGCATTCTACCTTTCGGCCAGTTGAGCACCTGTACGTTCGTTTCGTGGGTTGG
1 ATCCCCAGCTTGTGCATTCTACCTCTCGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGG
* * *
10991125 CTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGTCTAAGGGTTGTGGTAGCAGGAC
66 CTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGATAGCAGGAC
* * * * * * * *
10991190 CGGCATCGGGATCGACAGCACGCAGAGGGGGGTCGGGCTAATCCCCGGCTTGCGTATTATGCCTC
131 CGGCAGCAGGATCGACAGCACGCAAAGGGGGCTCGAGCTAATCCCCGACTTACGCATTATGCCTC
* * *
10991255 TTCGTCTGGCCTCTCCGACCGGCTGAGCATCTGCACGCTCATTTCATGGGTTGACTTAGGCATAC
196 TCCGTCCGGCCTCTCCGACCGGCTGAGCATCCGCACGCTCATTTCATGGGTTGACTTAGGCATAC
* * *
10991320 AGAGTTCATCCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGGATC
261 AGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGATC-GA-C-GACC
** * *
10991385 GAGGGTTACGGTAGCAGGATCAATAGCACGTAAGGGGATCGGGCCAATTCCTGGCTTGCACATTC
323 GAGGGTTACGACAGCAGGATCAATAGCACGTAAGGGGACCGAGCCAATTCCTGGCTTGCACATTC
* * *
10991450 TGCCTCTCCGTCCAACTGAGCGCCCGCACGTCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTC
388 TGCCTCTCCGTACAACTAAGCGCCCGCACGTCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
* * * ** *
10991515 ATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGTAGCGGGAGTGACAGCACGCAGTAGGG
453 ATTCCATCTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCAGGACCGACACCACGCAGTAGGG
** * *
10991580 GATTGGGTCGATCCCCGGCTTACGCATTATGCATCTCCGATCGACTCAGCGCCCGTACGCTCATT
518 GACCGGCTCGATCCCCGGCTTACACATTATGCATCTCCGATCGACTCAGCGCCCGTACGCTCATT
10991645 TTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAAATCAGATCAGATCGAGGGTTGC
583 TTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAAATCAGATCAGATCGAGGGTTGC
10991710 AGCAGCAAGATCGACAGCACGCAGAGGGGACCGGGTCG
648 AGCAGCAAGATCGACAGCACGCAGAGGGGACCGGGTCG
*
10991748 ATCCCCAGCTTGTGCATTCTGCCTCTCTGGCC-GACTGAGCACCCGCACGCTCGTTTCGTGGGTT
1 ATCCCCAGCTTGTGCATTCTACCTCTC-GGCCAG-CTGAGCACCCGCACGCTCGTTTCGTGGGTT
* * * *
10991812 GGCTTA-GCATACGGAGTTTATTCCGTGTCTAAGCCCCAGCCGGACCGAGGGTTGTGATAGCAGG
64 GGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGATAGCAGG
** * *
10991876 ATTGGTAGCAGGATCGACAGCACGCAAAGGGGGACT-GAGCTGATCCCCGACTTACGCATTATGC
129 ACCGGCAGCAGGATCGACAGCACGCAAAGGGGG-CTCGAGCTAATCCCCGACTTACGCATTATGC
* ** ** * *
10991940 CTCTCCGTCCGGCCT-TTCGGTCGGCTGAGC-TCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGC
193 CTCTCCGTCCGGCCTCTCCGACCGGCTGAGCAT-CCGCACGCTCATTTCATGGGTTGACTTAGGC
** * *
10992003 ATATGGCGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATC-A-GAC
257 ATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGATCGACGAC
* *** * * **
10992066 CGAGGGTTACGACAGTAGGATTGGTAGCATGTAAGGGGGACCGAGCCGA-TCCTCGGCTTGTGCA
322 CGAGGGTTACGACAGCAGGATCAATAGCACGTAA-GGGGACCGAGCCAATTCCT-GGCTTGCACA
*
10992130 TTCTGCCTCTCCG-ACAGACTAAGCGCCCGCACG-CTCG-TTCTGTGGGTTGGCTTAGTCATACG
385 TTCTGCCTCTCCGTACA-ACTAAGCGCCCGCACGTC-CGTTTC-GTGGGTTGGCTTAGGCATACG
* * **
10992192 GATTTCATTCCATCTCTAAGCCCCAGTCGGATCGATGGTTGTGGCAGCAGGACCGGTACCACGCA
447 GAGTTCATTCCATCTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCAGGACCGACACCACGCA
* * *
10992257 G-AGGGGGACCGAGCT-GATCCTCGGCTTGCACATTATGCCTCTCCGATCGAC
512 GTA-GGGGACCG-GCTCGATCCCCGGCTTACACATTATGCATCTCCGATCGAC
10992308 CTCTCCGGTC
Statistics
Matches: 473, Mismatches: 76, Indels: 27
0.82 0.13 0.05
Matches are distributed among these distances:
682 40 0.08
683 162 0.34
684 2 0.00
685 1 0.00
686 1 0.00
687 91 0.19
688 139 0.29
689 37 0.08
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (685 bp):
ATCCCCAGCTTGTGCATTCTACCTCTCGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGG
CTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGATAGCAGGAC
CGGCAGCAGGATCGACAGCACGCAAAGGGGGCTCGAGCTAATCCCCGACTTACGCATTATGCCTC
TCCGTCCGGCCTCTCCGACCGGCTGAGCATCCGCACGCTCATTTCATGGGTTGACTTAGGCATAC
AGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGATCGACGACCGAG
GGTTACGACAGCAGGATCAATAGCACGTAAGGGGACCGAGCCAATTCCTGGCTTGCACATTCTGC
CTCTCCGTACAACTAAGCGCCCGCACGTCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
CCATCTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCAGGACCGACACCACGCAGTAGGGGAC
CGGCTCGATCCCCGGCTTACACATTATGCATCTCCGATCGACTCAGCGCCCGTACGCTCATTTTG
TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAAATCAGATCAGATCGAGGGTTGCAGC
AGCAAGATCGACAGCACGCAGAGGGGACCGGGTCG
Found at i:10992463 original size:356 final size:360
Alignment explanation
Indices: 10991661--10992590 Score: 1044
Period size: 356 Copynumber: 2.6 Consensus size: 360
10991651 GTTGACTTAG
* * * * *
10991661 GCATACAGAGTTCATTCCCAGTCTAAAATCAGATCAGATCGAGGGTTGC-AGCAGCAAGATCGAC
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGATCGAGGGTTGCGA-CAGCAGGATC-AT
* * * * * * *
10991725 AGCACGCAGAGGGGACCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCTGGCCGACTGAGCAC
64 AGTACGCAGAGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACAGACTGAGCGC
*
10991790 CCGCACGCTCGTTTCGTGGGTTGGCTTAGCATACGGAGTTT-ATTCCGTGTCTAAGCCCCAGCCG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAGCATACGGA-TTTCATTCCATGTCTAAGCCCCAGCCG
* *
10991854 GACCGAGGGTTGTGATAGCAGGATTGGTAGCAGGATCGACAGCACGCAAAGGGGGACTGAGCTGA
193 GACCGAGGGTTGTG--AGCAGCA-TGGTAGCAGGATC-ACA-CACGCAAAGGGGGACCGAGCTGA
* * * * * * *
10991919 TCCCCGACTTACGCATTATGCCTCTCCGTCCGGCCTTTCGGTCGGCTGAGCTCCCGCACGCTTGT
253 TCCCCGACTTACACATTATGCCTCTCCGTCCGACCTTCCGGTCGACTGAGCGCCCGCACACTCGT
* * * *
10991984 TTCGTGGGTTGGCTTAGGCATATGGCGTTCATCCCCAGTCTAA
318 TTCGTGGGTTGACTTAGGCACACGGAGTTCATCCCCAGTCTAA
* * * * *
10992027 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGGGTTACGACAGTAGGAT--TGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGATCGAGGGTTGCGACAGCAGGATCATAG
* * *
10992090 TA-GCATGTAAGGGGGACCGAGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGACAGACTAAGC
66 TACGCA-G--A-GGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACAGACTGAGC
*
10992154 GCCCGCACGCTCG-TTCTGTGGGTTGGCTTAGTCATACGGATTTCATTCCATCTCTAAGCCCCAG
127 GCCCGCACGCTCGTTTC-GTGGGTTGGCTTAG-CATACGGATTTCATTCCATGTCTAAGCCCCAG
* * * * *
10992218 TCGGATCGATGGTTGTG-GCAGCA-GG-A-CCGG-T-AC-CACGCAGAGGGGGACCGAGCTGATC
190 CCGGACCGAGGGTTGTGAGCAGCATGGTAGCAGGATCACACACGCAAAGGGGGACCGAGCTGATC
* * * * *
10992276 CTCGGCTTGCACATTATGCCTCTCCGAT-CGACCTCTCCGGTCGACTGAGCGCCTGTACACTCGT
255 CCCGACTTACACATTATGCCTCTCCG-TCCGACCT-TCCGGTCGACTGAGCGCCCGCACACTCGT
*
10992340 TTCGTGGGTTGACTTAGGCACACGGAGTTCATCCCTAGTCTAA
318 TTCGTGGGTTGACTTAGGCACACGGAGTTCATCCCCAGTCTAA
* * * * *
10992383 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGTTCGAAGGTTGCGACAGCAGGATCAATT
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGATCGAGGGTTGCGACAGCAGGATC-ATA
* * * *
10992448 GTACGCAGAGGGGACCGGGCCGATCCCCGACTTGTGCATTCTGCCCCTCGGGCCAG-CTGAGCGC
65 GTACGCAGAGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTC-CGACAGACTGAGCGC
* * * *
10992512 CCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTA-GCATACGGATTTCATTCCATGTCTAAGCCCCAGCCG
*
10992577 GACCAAGGGTTGTG
193 GACCGAGGGTTGTG
10992591 GTAGCGGGAT
Statistics
Matches: 476, Mismatches: 71, Indels: 44
0.81 0.12 0.07
Matches are distributed among these distances:
355 50 0.11
356 220 0.46
357 11 0.02
359 6 0.01
360 6 0.01
361 1 0.00
362 5 0.01
363 3 0.01
364 5 0.01
365 4 0.01
366 124 0.26
367 41 0.09
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (360 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGATCGAGGGTTGCGACAGCAGGATCATAG
TACGCAGAGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACAGACTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAGCATACGGATTTCATTCCATGTCTAAGCCCCAGCCGGAC
CGAGGGTTGTGAGCAGCATGGTAGCAGGATCACACACGCAAAGGGGGACCGAGCTGATCCCCGAC
TTACACATTATGCCTCTCCGTCCGACCTTCCGGTCGACTGAGCGCCCGCACACTCGTTTCGTGGG
TTGACTTAGGCACACGGAGTTCATCCCCAGTCTAA
Found at i:10992686 original size:159 final size:159
Alignment explanation
Indices: 10992523--10992886 Score: 392
Period size: 158 Copynumber: 2.3 Consensus size: 159
10992513 CGCATGCCCG
* *
10992523 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCAAGGGT
1 TTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCACCAGACCGAACCAAGGGT
* * * * *** * *
10992587 TGTGGTAGCGGGATCGGCAGTGTGCGACG-GGGGATCAGGCCGAACCCCGGATTGCGCATTATGC
65 TGCGATAGCAGGATCGACAGCAAGC-ACGCGGGGATCAGGCCGAACCCCAGATTGCACATTATGC
* * * *
10992651 CTCTTCGACCGGCTCAGCGCCCGTACACTCA
129 CTCTCCGACCGGCTCAACACCCGCACACTCA
* * ** * * *
10992682 TTTCGTGGGTTGACTTATGCATAAAAGTTCATTCCAAGTCTAAG-ATCAGACCGAACCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCAAGGGTT
* * * * * *
10992746 GCGATAGTAGGATCGATAGCAAGCAGGCGGGGATCAGGCCGATCCCCAGCTTGCACATTCTGCCT
66 GCGATAGCAGGATCGACAGCAAGCACGCGGGGATCAGGCCGAACCCCAGATTGCACATTATGCCT
* * * *
10992811 CTCCGACCGGTTGAACACCCGCACGCTCG
131 CTCCGACCGGCTCAACACCCGCACACTCA
10992840 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCA
10992887 TACGGAGTTC
Statistics
Matches: 164, Mismatches: 37, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
157 5 0.03
158 119 0.73
159 39 0.24
160 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCAAGGGTT
GCGATAGCAGGATCGACAGCAAGCACGCGGGGATCAGGCCGAACCCCAGATTGCACATTATGCCT
CTCCGACCGGCTCAACACCCGCACACTCA
Found at i:10993939 original size:159 final size:157
Alignment explanation
Indices: 10993660--10994106 Score: 472
Period size: 159 Copynumber: 2.8 Consensus size: 157
10993650 GTTGCGGTAG
* * * **
10993660 CAGGATCGACAGCACGCAGGGGGGACCGGACCGATCCCCGACTTGCGCATTCTGCCTCTCTGGCC
1 CAGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGATC
* * * * * *
10993725 GACTGAGCCCTGCACGCCCGTTTCATGGGATGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
66 GGCTAAGCCC-GCACGCACGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * *
10993790 CCCCAG-CCGGACTGAGGGTTATGGCAG
130 CACCAGACCGGACTGAGGGTTATGACAA
* * * *
10993817 CGGGACCGACAGCACGCAGCGGGGGACTGGGCCGATCCCCGGCTTGCACATTATGCCTCTCTGAT
1 CAGGACCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGAT
* * *
10993882 CGGCTCAATGCCCGCACACACGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCT
65 CGGCT-AA-GCCCGCACGCACGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCT
* * *
10993946 AAG-ATCGGACCGGACTGAGGGTTGTGACAA
127 AAGCACCAGACCGGACTGAGGGTTATGACAA
** * ** ** * * * *
10993976 CAGGATTGACAGCATGCAGGGGGGACCGGGTTGAT-CCTAGCTTGCGTATTCTGCCTTTCGGCT-
1 CAGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGATC
*
10994039 GGCTGAGAGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
66 GGCT-A-AGCCCGCACGCACGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
10994104 GCA
129 GCA
10994107 TACGGAGTTC
Statistics
Matches: 238, Mismatches: 44, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
155 3 0.01
156 55 0.23
157 39 0.16
158 57 0.24
159 77 0.32
160 7 0.03
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
CAGGACCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGATC
GGCTAAGCCCGCACGCACGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ACCAGACCGGACTGAGGGTTATGACAA
Found at i:10994182 original size:26 final size:26
Alignment explanation
Indices: 10994078--10994171 Score: 179
Period size: 26 Copynumber: 3.6 Consensus size: 26
10994068 GTTGGCTTAG
10994078 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
10994104 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
10994130 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
10994156 GCATACGAAGTTCATT
1 GCATACGGAGTTCATT
10994172 TCTAGTCTAA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
26 67 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:10994539 original size:26 final size:26
Alignment explanation
Indices: 10994509--10994561 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10994499 GTTGACTTAG
*
10994509 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
10994535 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
10994561 G
1 G
10994562 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:10994840 original size:159 final size:158
Alignment explanation
Indices: 10994677--10995034 Score: 366
Period size: 157 Copynumber: 2.3 Consensus size: 158
10994667 GCCCGTTTTA
* * * ** *
10994677 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAAACCGAGGGTTGTGG
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCAAGGGTTACGA
* * * * **
10994741 CAGCGGGATCGGCAGCATACAG-AGGGGGATCGGGTCGATCCCCGGCTTGCACATTATGTCTCT-
66 CAGCAGGATCGACAG-AT-C-GCAGGGGGACCGGGTCGATCCCCGGCTTACACATTATACCTCTC
*
10994804 TCGGCCAACTCAACGCCCACACACTCGTTTCG
128 T-GACCAACTCAACGCCCACACACTCGTTTCG
* * * * * *
10994836 TGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAG-ATCGGACCGAACCAAGGGTTACG
1 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAAACCAAGGGTTACG
* * *
10994899 ACAGCAGGATCGACAGATCGCAGGGGGACCGGGTCGATCCTCGGCTTACGCATTCTACCTCTCTG
65 ACAGCAGGATCGACAGATCGCAGGGGGACCGGGTCGATCCCCGGCTTACACATTATACCTCTCTG
*** * * * **
10994964 ACTGGCTGAGCGCCCGCACGTTCGTTTCG
130 ACCAACTCAACGCCCACACACTCGTTTCG
10994993 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
10995035 TAAGGAGTTC
Statistics
Matches: 160, Mismatches: 33, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
156 4 0.03
157 89 0.56
158 6 0.04
159 58 0.36
160 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCAAGGGTTACGA
CAGCAGGATCGACAGATCGCAGGGGGACCGGGTCGATCCCCGGCTTACACATTATACCTCTCTGA
CCAACTCAACGCCCACACACTCGTTTCG
Found at i:10995057 original size:26 final size:26
Alignment explanation
Indices: 10995006--10995058 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10994996 GTTGGCTTAG
* *
10995006 GCATACGGAGTTCATTCCATGTCTAA
1 GCATAAGGAGTTCATTCCATGCCTAA
10995032 GCATAAGGAGTTCATTCCCA-GCCTAA
1 GCATAAGGAGTTCATT-CCATGCCTAA
10995058 G
1 G
10995059 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCATGCCTAA
Found at i:11001937 original size:159 final size:158
Alignment explanation
Indices: 11001645--11002356 Score: 520
Period size: 158 Copynumber: 4.4 Consensus size: 158
11001635 CCCAGTCCAA
* ** ** * **
11001645 GCATACGGAGTTCATT-CATAGTCTAAGATC-GAACCAGACCAAGGGTTGCGACAGCAGGATCGG
1 GCATACGGAGTTCATTCCAT-GTCTAAGACCAG-ACCAGACTGAGGGTTGCGGTAGCAGGACCAA
* * * * *
11001708 TAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTTTCCGACCAGTTGAGCG
64 CAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCG
11001773 CCCGCACGGCT-GTTTCGTGGGTTGGCTTAG
129 CCCGCAC-GCTCGTTTCGTGGGTTGGCTTAG
* * * * * **
11001803 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCCGACTGAGGGTTGTGGTAGCGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCAGACTGAGGGTTGCGGTAGCAGGACCAAC
* * * * *
11001867 AGCACGTAGAGGGGGACCGGGCCGATCCCTGGCTTGCACATTATGCCTCTCCGGCCAGCTCAGCG
65 AGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCG
* * *
11001932 CCCGCACGCTCATTTTGTGGGTTGACTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *** *
11001962 GCATACGTAGTTCATTCCCTGTCTAAGATTGGACCAGACTGAGGGTTGCGGTAGCAGGATCAACA
1 GCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACTGAGGGTTGCGGTAGCAGGACCAACA
* * * * * ** * * *
11002027 GCACGCAGGGGGGACTGGACTGGTCCCCGACTTATGCATTCTGCCTCTTCGGCCAACTGAGCACC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCC
* *
11002092 CGAATGCTCGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * *
11002120 GCATACGGAGTTCATTCC-TAGCCTAAGATCGGACCGGA-TCGAGGGTTACGGCAGTAGGACCAG
1 GCATACGGAGTTCATTCCAT-GTCTAAGACCAGACCAGACT-GAGGGTTGCGGTAGCAGGACCA-
* * * * *
11002183 CAGCAGGATCGACAGCACGCAAGGGGGATCGGGTCGATCCCCCGCTTGCGCATTTTACCTCTCCG
63 -A-CA-G--C-AC-GCA-G---GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
* * * * * * *
11002248 GTCAGTTGAGCACCTGCACGCTCGTTTCATTGGTTGGCTTCG
117 GCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * * * * *
11002290 GCATACGAAGTTCATTCTATGTCCAAGCCCCAG-CTAGACCGAGGGTTGTGGCAGTAGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCAGACTGAGGGTTGCGGTAGCAGGACCAAC
11002354 AGC
65 AGC
11002357 GGGATCGATA
Statistics
Matches: 431, Mismatches: 100, Indels: 40
0.75 0.18 0.07
Matches are distributed among these distances:
157 2 0.00
158 172 0.40
159 131 0.30
160 2 0.00
161 2 0.00
162 1 0.00
164 2 0.00
165 2 0.00
166 4 0.01
167 3 0.01
168 1 0.00
170 106 0.25
171 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACTGAGGGTTGCGGTAGCAGGACCAACA
GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:11002132 original size:158 final size:158
Alignment explanation
Indices: 11001645--11003345 Score: 562
Period size: 159 Copynumber: 10.2 Consensus size: 158
11001635 CCCAGTCCAA
* ** ** *
11001645 GCATACGGAGTTCATTCATAGTCTAAGATCGAACCAGACCAAGGGTTGCGACAGCAGGATCGGTA
1 GCATACGGAGTTCATTCATAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCA
* * *
11001710 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCT-TTCCGACCAGTTGAGCGC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTT-CGGCCAGCTGAGCGC
*
11001774 CCGCACGGCT-GTTTCGTGGGTTGGCTTAG
130 CCGAAC-GCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * *
11001803 GCATAGGGAGTTCATTCCAT-GTCTAAG-CCCCAGCCCGACTGAGGGTTGTGGTAGCGGGACCGG
1 GCATACGGAGTTCATT-CATAGTCTAAGATCGGA-CCAGACTGAGGGTTGCGGTAGCAGGATCGG
* * * * * *
11001866 CAGCACGTAGAGGGGGACCGGGCCGATCCCTGGCTTGCACATTATGCCTCTCCGGCCAGCTCAGC
64 CAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTGAGC
* * * *
11001931 GCCCGCACGCTCATTTTGTGGGTTGACTTAG
128 GCCCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * * **
11001962 GCATACGTAGTTCATTCCCT-GTCTAAGATTGGACCAGACTGAGGGTTGCGGTAGCAGGATCAAC
1 GCATACGGAGTTCATT-CATAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCGGC
* * * * * ** * *
11002026 AGCACGCAGGGGGGACTGGACTGGTCCCCGACTTATGCATTCTGCCTCTTCGGCCAACTGAGCAC
65 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTGAGCGC
*
11002091 CCGAATGCTCGTTTCGTGGGTTGGCTTAG
130 CCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
11002120 GCATACGGAGTTCATTCCTAGCCTAAGATCGGACCGGA-TCGAGGGTTACGGCAGTAGGACCAGC
1 GCATACGGAGTTCATTCATAGTCTAAGATCGGACCAGACT-GAGGGTT---GC-----G----GT
* * * * * * * *
11002184 AGCAGGATCGACAGCACGCAAGGGGGATCGGGTCGATCCCCCGCTTGCGCATTTTACCTCTCCGG
53 AGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGG
* * * * * * * *
11002249 TCAGTTGAGCACCTGCACGCTCGTTTCATTGGTTGGCTTCG
118 CCAGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * *
11002290 GCATACGAAGTTCATTC-TATGTCCAAG-CCCCAGCTAGACCGAGGGTTGTGGCAGTAGGACCGA
1 GCATACGGAGTTCATTCATA-GTCTAAGATCGGA-CCAGACTGAGGG-T-T-GC-G--GTA--G-
** * * * *
11002353 CAGCGGGATCGATAGCACACAGAGGGGGACCGGGCTGATCCCAGGCTTGCACATTATGCCTCTTC
55 CA---GGATCGGCAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTG--C-----G-C-ATTC
* * * * * *
11002418 GGTCGGCCTCTCCGGCCGGCTGAGCGTCCGCATGCTCGTTTCGTGGGTTGACTTAG
107 --T--GCCTCTTCGGCCAGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** *
11002474 CCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGAT
1 GCATACGGAGTTCATTCATAGTCTAAG-AT-C-G-G---A--CC-AGACT--GA---G---GG-T
* * * * * *
11002539 CGAGGGTTGTGGCAGCAAGATCGGTAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCAT
47 -T-GCG--GTAGCAG---GATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCAT
* * * * * *
11002604 TCTGCCTCTACGACCAGCTGGGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
105 TCTGCCTCTTCGGCCAGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * * *
11002658 GCATAAGGAGTTCATTCCA-CGTCTAAG-CCCCATCCGGA-TCGAGGGTTGTGGCAGC-GGTACC
1 GCATACGGAGTTCATT-CATAGTCTAAGATCGGA-CCAGACT-GAGGGTTGCGGTAGCAGG-ATC
* * * * * * * * *
11002719 AGTAGCACGCCGGGGGGGACCGGGCCGATCCCTGGCTTGTGCATTATGCCTCTTCGGTCGGCTCA
62 GGCAGCACG-CAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTGA
* * * * *
11002784 GCACCCGCACGCTCATTTCGTGGGTTGACTTAT
126 GCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
11002817 GCATACGGAGTTCATTC-TCAGTCTAAGCATACAGAGTTCATTCGCAGTCT-AAGATCGAACCGG
1 GCATACGGAGTTCATTCAT-AGTCTAAG-AT-C-G-G---A--C-CAGACTGAGGGTTG---CGG
** * * ** * * *
11002880 -ACTGGGGGTTGTGGCAGCAGGATCGGCAGCACGCAAGGGGGACTAGGCTGATCCTCGTCTTGCG
52 TA--GCAGGAT-CGGCAGC---A----C-GCA-G---GGGGGACCGGGCCGATCCCCGGCTTGCG
* * * * * * *
11002944 CATTCAGCCTCTTCGACCGGCTGAGCGCCCGCATGCCCGTTTCATGGGTTGGCTTAG
102 CATTCTGCCTCTTCGGCCAGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** ** * * * *
11003001 GCATAGGGAGTTCATTCCAT-TTCTAAG-CCCCAGCTGGA-TCGAGGGTTGTGGCAGCGGGACCG
1 GCATACGGAGTTCATT-CATAGTCTAAGATCGGA-CCAGACT-GAGGGTTGCGGTAGCAGGATCG
* * * * * * * * * *
11003063 ACAGCACGCAGAGGAGGATCGGGTCGATCCCTGGCTTGCGCATTATGCCTTTTCGACCGGCTCAG
63 GCAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTGAG
* * * * *
11003128 CACCCGCATGCTCGTTTTGTGGGTTGACTTAG
127 CGCCCGAACGCTCGTTTCGTGGGTTGGCTTAG
** * * * ** *
11003160 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCATAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCA
* * * * *
11003225 GCACGCAAGGGGGGACCGGGCCGATCCCCGGCTTGCACTTTCTACCTC-TCTGACCGGCTGAGCG
66 GCACGC-AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTC-GGCCAGCTGAGCG
* *
11003289 CCCGCACGCTCCTTTCGTGGGTTGGCTTAG
129 CCCGAACGCTCGTTTCGTGGGTTGGCTTAG
*
11003319 GCATACGGGGTTCATTCCAT-GTCTAAG
1 GCATACGGAGTTCATT-CATAGTCTAAG
11003346 CATATGGAGT
Statistics
Matches: 1132, Mismatches: 298, Indels: 225
0.68 0.18 0.14
Matches are distributed among these distances:
157 7 0.01
158 172 0.15
159 429 0.38
160 8 0.01
161 6 0.01
162 4 0.00
163 3 0.00
164 3 0.00
165 1 0.00
166 5 0.00
167 4 0.00
168 6 0.01
169 7 0.01
170 136 0.12
171 28 0.02
172 6 0.01
173 10 0.01
174 2 0.00
175 8 0.01
176 3 0.00
178 1 0.00
179 1 0.00
180 4 0.00
181 4 0.00
182 1 0.00
184 206 0.18
185 3 0.00
186 2 0.00
187 1 0.00
188 3 0.00
189 1 0.00
190 1 0.00
192 1 0.00
193 1 0.00
194 3 0.00
195 2 0.00
196 2 0.00
197 22 0.02
198 16 0.01
199 2 0.00
201 3 0.00
202 4 0.00
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCATAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCA
GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTGAGCGCC
CGAACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:11002511 original size:26 final size:26
Alignment explanation
Indices: 11002475--11002526 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11002465 TTGACTTAGC
11002475 CATACAGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
* * *
11002501 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
11002527 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAG
Found at i:11002853 original size:26 final size:26
Alignment explanation
Indices: 11002817--11002869 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11002807 GTTGACTTAT
* *
11002817 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCGCAGTCTAA
11002843 GCATACAGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCGCAGTCTAA
11002869 G
1 G
11002870 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCGCAGTCTAA
Found at i:11003093 original size:343 final size:342
Alignment explanation
Indices: 11002445--11003186 Score: 1042
Period size: 343 Copynumber: 2.2 Consensus size: 342
11002435 GGCTGAGCGT
* * *
11002445 CCGCATGCTCGTTTCGTGGGTTGACTTAGCCATACAGAGTTCATCCCCAGTCTAAGCATACGGAG
1 CCGCATGCTCGTTTCGTGGGTTGACTTAG-CATACGGAGTTCATTCCCAGTCTAAGCATACAGAG
* * * *
11002510 TTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAAGATCGGTAGCACGCAGGG
65 TTCATTCCTAGTCTAAGATCGAACCGGATCGAGGGTTGTGGCAGCAAGATCGGCAGCACGCAAGG
* * *
11002575 GGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTACGACCAGCTGGGTGCCCGCACGCCCG
130 GGGACCAGGTCGATCCCCGGCTTGCGCATTCAGCCTCTACGACCAGCTGAGCGCCCGCACGCCCG
* *
11002640 TTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCACGTCTAAGCCCCATCCGGATCGAGGGTT
195 TTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCACGTCTAAGCCCCAGCCGGATCGAGGGTT
* * * * * *
11002705 GTGGCAGCGGTACCAGTAGCACGCCGGGGGGGACCGGGCCGATCCCTGGCTTGTGCATTATGCCT
260 GTGGCAGCGGGACCAGCAGCACGCAGAGGAGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCT
**
11002770 CTTCGGTCGGCTCAGCAC
325 CTTCGACCGGCTCAGCAC
* * *
11002788 CCGCACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCTCAGTCTAAGCATACAGAG
1 CCGCATGCTCGTTTCGTGGGTTGACTTA-GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAG
* *
11002853 TTCATTCGC-AGTCTAAGATCGAACCGGA-CTGGGGGTTGTGGCAGCAGGATCGGCAGCACGCAA
65 TTCATTC-CTAGTCTAAGATCGAACCGGATC-GAGGGTTGTGGCAGCAAGATCGGCAGCACGCAA
* * * * * *
11002916 GGGGGACTAGG-CTGATCCTCGTCTTGCGCATTCAGCCTCTTCGACCGGCTGAGCGCCCGCATGC
128 GGGGGACCAGGTC-GATCCCCGGCTTGCGCATTCAGCCTCTACGACCAGCTGAGCGCCCGCACGC
* ** *
11002980 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATTTCTAAGCCCCAGCTGGATCGAGG
192 CCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCACGTCTAAGCCCCAGCCGGATCGAGG
* *
11003045 GTTGTGGCAGCGGGACC-GACAGCACGCAGAGGAGGATCGGGTCGATCCCTGGCTTGCGCATTAT
257 GTTGTGGCAGCGGGACCAG-CAGCACGCAGAGGAGGACCGGGCCGATCCCTGGCTTGCGCATTAT
*
11003109 GCCTTTTCGACCGGCTCAGCAC
321 GCCTCTTCGACCGGCTCAGCAC
*
11003131 CCGCATGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 CCGCATGCTCGTTTCGTGGGTTGACTTA-GCATACGGAGTTCATTCCCAGTCTAAG
11003187 ATCAGACCGG
Statistics
Matches: 351, Mismatches: 43, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
342 3 0.01
343 346 0.99
344 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (342 bp):
CCGCATGCTCGTTTCGTGGGTTGACTTAGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGT
TCATTCCTAGTCTAAGATCGAACCGGATCGAGGGTTGTGGCAGCAAGATCGGCAGCACGCAAGGG
GGACCAGGTCGATCCCCGGCTTGCGCATTCAGCCTCTACGACCAGCTGAGCGCCCGCACGCCCGT
TTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCACGTCTAAGCCCCAGCCGGATCGAGGGTTG
TGGCAGCGGGACCAGCAGCACGCAGAGGAGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTC
TTCGACCGGCTCAGCAC
Found at i:11003357 original size:26 final size:26
Alignment explanation
Indices: 11003319--11003371 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11003309 GTTGGCTTAG
*
11003319 GCATACGGGGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
11003345 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11003371 G
1 G
11003372 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11003583 original size:26 final size:26
Alignment explanation
Indices: 11003536--11003634 Score: 110
Period size: 26 Copynumber: 3.8 Consensus size: 26
11003526 TTAGGAATAC
* *
11003536 GGAGTTCATCCCCAA-TCGAAGCATAA
1 GGAGTTCAT-TCCAAGTCTAAGCATAA
* *
11003562 GGAGTTCATTCCAAGTCTAAGCCTAT
1 GGAGTTCATTCCAAGTCTAAGCATAA
* *
11003588 GGAGTTCATTCCCAGTCTAAGCATAC
1 GGAGTTCATTCCAAGTCTAAGCATAA
* *
11003614 GGAGTTCATTCCCAGTGTAAG
1 GGAGTTCATTCCAAGTCTAAG
11003635 ATCAGACTGG
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
25 4 0.06
26 60 0.94
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.26
Consensus pattern (26 bp):
GGAGTTCATTCCAAGTCTAAGCATAA
Found at i:11003618 original size:52 final size:52
Alignment explanation
Indices: 11003536--11003634 Score: 144
Period size: 52 Copynumber: 1.9 Consensus size: 52
11003526 TTAGGAATAC
11003536 GGAGTTCATCCCCAATCGAAGCATAAGGAGTTCATTCCAAGTCTAAGCCTAT
1 GGAGTTCATCCCCAATCGAAGCATAAGGAGTTCATTCCAAGTCTAAGCCTAT
* * * * * *
11003588 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAG
1 GGAGTTCATCCCCAATCGAAGCATAAGGAGTTCATTCCAAGTCTAAG
11003635 ATCAGACTGG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
52 41 1.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.26
Consensus pattern (52 bp):
GGAGTTCATCCCCAATCGAAGCATAAGGAGTTCATTCCAAGTCTAAGCCTAT
Found at i:11003925 original size:159 final size:158
Alignment explanation
Indices: 11003756--11004087 Score: 352
Period size: 159 Copynumber: 2.1 Consensus size: 158
11003746 CGTTTTGTGG
* * * * * *
11003756 GTTGCCTTAGGCATAGGGA-GTTCATT-CCA-TGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGG
1 GTTGACTTAGGCATAGCGACGTTCATTCCCACT-T-TAAG-ACCAGACCGGACCAAGGGTTGCGA
* * * * *
11003817 CAGCGGGACCGACAGCACGCAGAAGG-GGACTGGGTCGATCCTCGACTTGCGCATTATGCCTCTC
63 CAGCAGGACCGACAGCACGCAG--GGAGGACCGGGCCGATCCCCGACTTGCACATTATGCCTCTC
*
11003881 CGGCCGGCTCAGCGCCCGCACACTCATTTCGTGA
126 CGACCGGCTCAGCGCCCGCA-ACTCATTTCGTGA
* *
11003915 GTTGACTTAGGCATA-CGACGTTCATTCCCACTTTGAGATCAGACCGGACCAAGGGTTGCGACAG
1 GTTGACTTAGGCATAGCGACGTTCATTCCCACTTTAAGACCAGACCGGACCAAGGGTTGCGACAG
* * * *
11003979 CAGGATCGACAGCACGCAGGGAGGACCGGGCCGATCCCCGTCTTGCACATTCTGCCTCTCCGATC
66 CAGGACCGACAGCACGCAGGGAGGACCGGGCCGATCCCCGACTTGCACATTATGCCTCTCCGACC
* * * * *
11004044 GGCTGAGCGCCCGTAGCTCGTTTCGTGG
131 GGCTCAGCGCCCGCAACTCATTTCGTGA
*
11004072 GTTGGCTTAGGCATAG
1 GTTGACTTAGGCATAG
11004088 TTCATTCCAC
Statistics
Matches: 143, Mismatches: 24, Indels: 13
0.79 0.13 0.07
Matches are distributed among these distances:
157 26 0.18
158 52 0.36
159 60 0.42
160 4 0.03
161 1 0.01
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (158 bp):
GTTGACTTAGGCATAGCGACGTTCATTCCCACTTTAAGACCAGACCGGACCAAGGGTTGCGACAG
CAGGACCGACAGCACGCAGGGAGGACCGGGCCGATCCCCGACTTGCACATTATGCCTCTCCGACC
GGCTCAGCGCCCGCAACTCATTTCGTGA
Found at i:11005450 original size:315 final size:316
Alignment explanation
Indices: 11004457--11005903 Score: 1664
Period size: 316 Copynumber: 4.6 Consensus size: 316
11004447 CCCAATCTAA
** * * ** * *
11004457 GCATACAGAGTTCATTCCTAGTCTAAGATTGGACTGAACTAAGGGTTACGGCAGCAGGATTGGTA
1 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGATA
* * * *
11004522 GCACGCGAGGGGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCC
66 GCACGC-AGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTTTCCGGCCGGCTGAGCGCC
*
11004587 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCCGG
130 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* *
11004652 ATCGAGGGTTGTAGCAG-TAGGACCGGCAGCACGCAG-GGGGGACCGGGTCGATCC-CTGGCTTG
195 ATCGAGGGTTGTGGCAGCGA-GACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCTC-GGCTTG
* * * * * *
11004714 TGCATTATGCCTCTTCGGTCGGCTAAGCACCCGCACGCTTGTTTCATGGGTTGACTTAC
258 CGCATTATGCCTCTTCGGTCAGCTCAGCGCCCGCACACTTGTTTCATGGGTTGACTTAT
* * * * * * *
11004773 GCATACAGAGTTTATT-CTCAGTCAAAGATCAGACCGGATCGAGGGTTACGACAGTAGCATCGAC
1 GCATACAGAGTTCATTCCT-AGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGAT
* * * * * ** *
11004837 AGCACGTAGGGGGGATCGGGTCAATCCCCGGCTTACGCATTCTGCCTCTCCTACCGGCTGAGTGC
65 AGCACGCA-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTTTCCGGCCGGCTGAGCGC
**
11004902 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG-CTAAGCCCCAGATG
129 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * * * *
11004966 GATCGAGGGTTGTGGCAGTGAAACCGACAGCACACAGAGGGGGACCGGGCCGATCCTCGGCTTGC
194 GATCGAGGGTTGTGGCAGCGAGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGC
* * * *
11005031 GCATTATGCCTCTTCGGCCAGGTCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAT
259 GCATTATGCCTCTTCGGTCAGCTCAGCGCCCGCACACTTGTTTCATGGGTTGACTTAT
** * * * * *
11005089 GCATATGGAGTTCATTTCTAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAGGATCGATA
1 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGATA
* *
11005154 GCACGCAGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTTTCCGGCTGGCTGAGCGCCC
66 GCACGCAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTTTCCGGCCGGCTGAGCGCCC
* * *
11005219 GTACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGA
131 GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
* * * * *
11005284 TCGAGGGTTGTGGCAGCGGGATCGGTAGCACGCAGAGGGGGACCGGG-CTGATCCTCGACTTGCA
196 TCGAGGGTTGTGGCAGCGAGACCGGCAGCACGCAGAGGGGGACCGGGTC-GATCCTCGGCTTGCG
* ** *
11005348 CATTATGCCTCTTCGG-CTAGCTCAGCGCCTGCACACTTGTTTTGTGGGTTG-CTTAG
260 CATTATGCCTCTTCGGTC-AGCTCAGCGCCCGCACACTTGTTTCATGGGTTGACTTAT
* ** * * * *
11005404 GCATACAGAGTTCATTCCCAGTCTAAGATC-GAACCAAACCGAGGGTTTCGACAGTAGGATCGAC
1 GCATACAGAGTTCATTCCTAGTCTAAGATCAG-ACCGGACCGAGGGTTACGGCAGCAGGATCGAT
* * * * * * * **
11005468 AGCACGCAGGGGGACCGGACTGATCCTCGGCTTACGTATTCTATCTCTTT--AACCGG-TGGAGC
65 AGCACGCAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCT-GC-CTTTCCGGCCGGCT-GAGC
* * *
11005530 GCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCTAGC
127 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* * ** *
11005595 CAGATCGATGGTTGTGGCAGCGAGACCGGCAGCACGCAGAGGCAGACCGGGTCGATCCCCGGCTT
192 CGGATCGAGGGTTGTGGCAGCGAGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTT
* *
11005660 GCGCATTATGCCTCTTCGGTCGGCTCAGTGCCCGCACACTTGTTTCATGGGTTGACTTAT
257 GCGCATTATGCCTCTTCGGTCAGCTCAGCGCCCGCACACTTGTTTCATGGGTTGACTTAT
** * * * ** *
11005720 GCATATGGAGTTCATTCCTACTCTAAGATCAGACCAGA-CAAGGGTTGTGGCAGCAAGATCGATA
1 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGATA
* * * * *
11005784 GCAAGCAGAGGGGATCAGGCCGATCCCCGGCTTGCGCAGTCTACCTCTT-CGGCCGACTGAGCGC
66 GCACGCAG-GGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCT-TTCCGGCCGGCTGAGCGC
* * * *
11005848 CCACATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTCA-GTCTAAG
129 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTC-CATGTCTAAG
11005904 ATTTTGAGGC
Statistics
Matches: 952, Mismatches: 157, Indels: 44
0.83 0.14 0.04
Matches are distributed among these distances:
314 4 0.00
315 426 0.45
316 511 0.54
317 11 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (316 bp):
GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGATA
GCACGCAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTTTCCGGCCGGCTGAGCGCCC
GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
TCGAGGGTTGTGGCAGCGAGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGCGC
ATTATGCCTCTTCGGTCAGCTCAGCGCCCGCACACTTGTTTCATGGGTTGACTTAT
Found at i:11005668 original size:631 final size:630
Alignment explanation
Indices: 11004464--11005903 Score: 1889
Period size: 631 Copynumber: 2.3 Consensus size: 630
11004454 TAAGCATACA
** * * * *
11004464 GAGTTCATTCCTAGTCTAAGATTGGACTGAACTAAGGGTTACGGCAGCAGGATTGGTAGCACGCG
1 GAGTTCATTCCTAGTCTAAGATCAGAC-GGACTAAGGGTTGCGGCAGCAGGATCGATAGCACGC-
* *
11004529 AGGGGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGC
64 AGGGGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTTTCCGGCCGGCTGAGCGCCCGCACGC
*
11004594 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCCGGATCGAGG
129 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGG
* * **
11004659 GTTGTAGCAGTAGGACCGGCAGCACGCAGGGGGGACCGGGTCGATCCCTGGCTTGTGCATTATGC
194 GTTGTAGCAGCAGGACCGGCAGCACGCAGGGGGGACCGGGTCGATCCCTGACTTGCACATTATGC
* * *
11004724 CTCTTCGGTCGGCTAAGCACCCGCACGCTTGTTTCATGGGTTGACTTACGCATACAGAGTTTATT
259 CTCTTCGGTCAGCTAAGCACCCGCACACTTGTTTCATGGGTTGACTTACGCATACAGAGTTCATT
* ** * * *
11004789 CTCAGTCAAAGATCAGACCGGATCGAGGGTTACGACAGTAGCATCGACAGCACGTAGGGGGGATC
324 CCCAGTCAAAGATCAGACCAAACCGAGGGTTACGACAGTAGCATCGACAGCACGCAGGGGGGACC
* * * *
11004854 GGGTCAATCCCCGGCTTACGCATTCTGCCTCTCCTACCGGCTGAGTGCCCGCACGCCCGTTTCGT
389 GGCTCAATCCCCGGCTTACGCATTCTACCTCTCCTACCGGCTGAGCGCCCGCACACCCGTTTCGT
* **
11004919 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCTAAGCCCCAGATGGATCGAGGGTTGTGGCAG
454 GGGTTGGCTTAGGCATAAGGAGTTCATTCCATGCTAAGCCCCAGACAGATCGAGGGTTGTGGCAG
* ** *
11004984 TGAAACCGACAGCACACAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGC
519 CGAAACCGACAGCACACAGAGGCAGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGC
* *
11005049 CAGG-TCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTATGCATATG
584 C-GGCTCAGCGCCCGCACACTTGTTTCATGGGTTGACTTATGCATATG
* * *
11005096 GAGTTCATTTCTAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAGGATCGATAGCACGCA
1 GAGTTCATTCCTAGTCTAAGATCAGA-CGGACTAAGGGTTGCGGCAGCAGGATCGATAGCACGCA
* * *
11005161 GGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTTTCCGGCTGGCTGAGCGCCCGTACGCC
65 GGGGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTTTCCGGCCGGCTGAGCGCCCGCACGCC
* *
11005226 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGATCGAGGG
130 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGG
* * * *
11005291 TTGTGGCAGCGGGATCGGTAGCACGCAGAGGGGGACCGGG-CTGAT-CCTCGACTTGCACATTAT
195 TTGTAGCAGCAGGACCGGCAGCACGCAG-GGGGGACCGGGTC-GATCCCT-GACTTGCACATTAT
* * * ** *
11005354 GCCTCTTCGG-CTAGCTCAGCGCCTGCACACTTGTTTTGTGGGTTG-CTTAGGCATACAGAGTTC
257 GCCTCTTCGGTC-AGCTAAGCACCCGCACACTTGTTTCATGGGTTGACTTACGCATACAGAGTTC
* * *
11005417 ATTCCCAGTCTAAGATC-GAACCAAACCGAGGGTTTCGACAGTAGGATCGACAGCACGCA-GGGG
321 ATTCCCAGTCAAAGATCAG-ACCAAACCGAGGGTTACGACAGTAGCATCGACAGCACGCAGGGGG
* * * * *
11005480 GACCGGACT-GATCCTCGGCTTACGTATTCTATCTCT-TTAACCGG-TGGAGCGCCCGCACACCC
385 GACCGG-CTCAATCCCCGGCTTACGCATTCTACCTCTCCT-ACCGGCT-GAGCGCCCGCACACCC
* * *
11005542 GTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCTAGCCAGATCGATGGT
447 GTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATG-CTAAGCCCCAGACAGATCGAGGGT
* * * *
11005607 TGTGGCAGCGAGACCGGCAGCACGCAGAGGCAGACCGGGTCGATCCCCGGCTTGCGCATTATGCC
511 TGTGGCAGCGAAACCGACAGCACACAGAGGCAGACCGGGCCGATCCCCGGCTTGCGCATTATGCC
* *
11005672 TCTTCGGTCGGCTCAGTGCCCGCACACTTGTTTCATGGGTTGACTTATGCATATG
576 TCTTCGGCCGGCTCAGCGCCCGCACACTTGTTTCATGGGTTGACTTATGCATATG
* * * * *
11005727 GAGTTCATTCCTACTCTAAGATCAGACCAGAC-AAGGGTTGTGGCAGCAAGATCGATAGCAAGCA
1 GAGTTCATTCCTAGTCTAAGATCAGA-CGGACTAAGGGTTGCGGCAGCAGGATCGATAGCACGCA
* * * * * *
11005791 GAGGGGATCAGGCCGATCCCCGGCTTGCGCAGTCTACCTCTT-CGGCCGACTGAGCGCCCACATG
65 G-GGGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCT-TTCCGGCCGGCTGAGCGCCCGCACG
* *
11005855 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTCA-GTCTAAG
128 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTC-CATGTCTAAG
11005904 ATTTTGAGGC
Statistics
Matches: 703, Mismatches: 91, Indels: 29
0.85 0.11 0.04
Matches are distributed among these distances:
629 2 0.00
630 120 0.17
631 462 0.66
632 118 0.17
633 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (630 bp):
GAGTTCATTCCTAGTCTAAGATCAGACGGACTAAGGGTTGCGGCAGCAGGATCGATAGCACGCAG
GGGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTTTCCGGCCGGCTGAGCGCCCGCACGCCC
GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGT
TGTAGCAGCAGGACCGGCAGCACGCAGGGGGGACCGGGTCGATCCCTGACTTGCACATTATGCCT
CTTCGGTCAGCTAAGCACCCGCACACTTGTTTCATGGGTTGACTTACGCATACAGAGTTCATTCC
CAGTCAAAGATCAGACCAAACCGAGGGTTACGACAGTAGCATCGACAGCACGCAGGGGGGACCGG
CTCAATCCCCGGCTTACGCATTCTACCTCTCCTACCGGCTGAGCGCCCGCACACCCGTTTCGTGG
GTTGGCTTAGGCATAAGGAGTTCATTCCATGCTAAGCCCCAGACAGATCGAGGGTTGTGGCAGCG
AAACCGACAGCACACAGAGGCAGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCG
GCTCAGCGCCCGCACACTTGTTTCATGGGTTGACTTATGCATATG
Found at i:11006610 original size:26 final size:26
Alignment explanation
Indices: 11006574--11006624 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
11006564 TGACTTCGGT
11006574 ATACGAAGTTCATCCCCAGTCTAAGC
1 ATACGAAGTTCATCCCCAGTCTAAGC
* * *
11006600 ATACGGAGTTCATTCTCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
11006625 ATTGGACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGC
Found at i:11007139 original size:158 final size:158
Alignment explanation
Indices: 11006598--11007139 Score: 461
Period size: 158 Copynumber: 3.4 Consensus size: 158
11006588 CCCAGTCTAA
** * * * *
11006598 GCATACGGAGTTCATTCTCAGTCTAAG-ATTGGACCGGA-CTGAGGGTTGTGGCAATAGGATCGG
1 GCATACGGAGTTCATTC-CAGTCTAAGCCCTAGACCGGATC-GAGGGTTATGGCAGTAGGATCGA
* ** * * * *
11006661 TAGCACATAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCAACCGGTTGAGCT
64 CAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTCCAACCGGCTGAGCC
11006726 CCCGCACG-TCCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCT-CGTTTCATGGGTTGGCTTAG
* * * * * ** *
11006756 GCATAGGGAGTTCATTCCATGTCTGAGCCCCAG-CCAGG-TTGAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCA-GTCTAAGCCCTAGACC-GGATCGAGGGTTATGGCAGTAGGATCGA
* * * * * *
11006819 CAGCATGCAGAGGAGGACCGAGCCGATCCCTGGCTTGCGCATTATACCTCT-CATACCGGCTCAG
64 CAGCACGCAG-GGGGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTCCA-ACCGGCTGAG
** * * * *
11006883 TGCCCGCATGCTCCTTTCTTGGGTTGACTTAG
127 CCCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * * * * * *
11006915 GCATATGGAGTTCATTCCCAGTCTATGATC-GGATCAGATCGAGGGTTACGGCAGCAGGATCAAC
1 GCATACGGAGTTCATT-CCAGTCTAAGCCCTAGACCGGATCGAGGGTTATGGCAGTAGGATCGAC
* * * * * ** *
11006979 AGCACGCAGGGGGGATCGGGCCGATCCCCGACTCGTGCATTTTGCCTCTCCGGCCTGCTGAGCCC
65 AGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTCCAACCGGCTGAGCCC
* *
11007044 CCGCACGCTTGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
*
11007073 GCATACGGAGTTCATTCCATGTCTAAGCCCTAG-CCGGATCGAGGGTTATGGCAGTAGGGTCGAC
1 GCATACGGAGTTCATTCCA-GTCTAAGCCCTAGACCGGATCGAGGGTTATGGCAGTAGGATCGAC
11007137 AGC
65 AGC
11007140 GGGATCGACA
Statistics
Matches: 295, Mismatches: 76, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
157 5 0.02
158 165 0.56
159 121 0.41
160 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAGTCTAAGCCCTAGACCGGATCGAGGGTTATGGCAGTAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTCCAACCGGCTGAGCCCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:11007283 original size:26 final size:26
Alignment explanation
Indices: 11007254--11007309 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
11007244 TGGGTTGACT
* *
11007254 TAAGCATACGGAGTTTATCCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
*
11007280 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
11007306 TAAG
1 TAAG
11007310 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAGTC
Found at i:11010069 original size:26 final size:26
Alignment explanation
Indices: 11010040--11010092 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11010030 GTTGACTTAG
11010040 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
11010066 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11010092 G
1 G
11010093 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11010757 original size:26 final size:26
Alignment explanation
Indices: 11010721--11010773 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11010711 GTTAACTTAG
*
11010721 GCATATGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
11010747 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
11010773 G
1 G
11010774 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:11011080 original size:26 final size:26
Alignment explanation
Indices: 11011044--11011094 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11011034 TGACTTAGGC
11011044 ATACGGAGTTCATT-CCATGTCTAAGG
1 ATACGGAGTTCATTCCCA-GTCTAAGG
*
11011070 ATACGGAGTTCGTTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
11011095 ATCAGATTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGG
Found at i:11011299 original size:689 final size:688
Alignment explanation
Indices: 11010382--11011757 Score: 1997
Period size: 689 Copynumber: 2.0 Consensus size: 688
11010372 TGACTTAGGC
*
11010382 ATACCGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCAAGATCGATAGC
1 ATACCGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAAGATCGATAGC
* * *
11010447 ACACAGGGGGGATCGGGTCGTCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCAG
66 ACACAGAGGGGATCGGGCCGTCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCAC
* * * *
11010512 ATGCCCGTTTCGTGGGTTAGCTTAGGCATACGGAATTCATTCCATGTCTAAGCCCCAGCCAGATC
131 ACGCCCGTTTCGTGGATTAGCTTAGGCATACAGAATTCATTCCATGTCTAAGCCCCAGCCAGACC
* * * * ** *
11010577 GAGGGTTGTGATAGCAGGACCGGTAGTGGAATCGACAGCATGCATAGGGGGACCGGGCTGATCCT
196 AAGGGTTGTGACAGCAGGACCGGTAGCGGAATCGACAGCATACATAGGGGGACCAAGCTGATCCC
** *
11010642 CAGCTCGCGCATTATGCCTCTCTGACCGGCCTCTCCAGCCGATTGAGCACTCCCACGCTCGTTTT
261 CAGCTCGCAAATTATGCCTCTCTGACCGGCCTCTCCAGCCGACTGAGCACTCCCACGCTCGTTTT
* * *
11010707 CTGGGTTAACTTAGGCATATGGAGTTCATCCCCAATCTAAGCATACGGAGTTTATTCCCAGTCTA
326 CTGGGTTAACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTA
* *
11010772 AGATCAGATCGGATCGAGGGTTACGGCAGCAGGATCGGTAGCACGTAGAGGGGATCGGGCCGATC
391 AGATCAGACCGGATCGAGGGTTACGACAGCAGGATCGGTAGCACGTAGAGGGGATCGGGCCGATC
* ** *
11010837 GCTGGCTTGTGCATTCTACCTCTTCGATCAGCTGAGCACCCGCACGCC-GTTTCTTTGGTTGGCT
456 GCCGGCTTACGCATTCTACCTCTTCGATCAGCTGAGCACCCGCACGCCTGTTTCGTTGGTTGGCT
* ** * * *
11010901 TAGGCCTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAGCGGCAACACGCAGAGGGGGGCCA
521 TAGGCCTAGGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCGACAACACGCAGAGGGGGACCA
* * *
11010966 GGCCGATCCCCAGCTTGCGCATTATGCCTTTTCG-GCTGGCTCAGCACCCGAACGCTCGTTTCGT
586 GGCCGAT-CCCAGCTTGCGCATTATGCCTCTCCGATC-GGCTCAGCACCCGAACGCTCGTTTCGT
*
11011030 GGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGG
649 GGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGG
* * ** * * *
11011070 ATACGGAGTTCGTTCCCAGTCTAAGATCAGATTGGATCGAGGGTTGC-AGCAGCAGGATCGGTAG
1 ATACCGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGA-CAGCAAGATCGATAG
* * * * * *
11011134 CACGCAGAGGGGATCGGGCCGATCCCCGTCTTGCGTATTCTGCCTCTTCGG-CTGGTTGAGCGCC
65 CACACAGAGGGGATCGGGCCG-TCCCCGACTTACGCATTCTGCCTCTCCGGTC-GGCTGAGCGCC
* * * *
11011198 CACACGCCCGTTTTGTGGATTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGG
128 CACACGCCCGTTTCGTGGATTAGCTTAGGCATACAGAATTCATTCCATGTCTAAGCCCCAGCCAG
*
11011263 ACCAAGGGTTGTGGCAGCAGGACCGGTAGCGGAATCGACAGCATACATAGGGGGACCAAGCTGAT
193 ACCAAGGGTTGTGACAGCAGGACCGGTAGCGGAATCGACAGCATACATAGGGGGACCAAGCTGAT
* * * * *
11011328 CCCCAGCTCGTAAATTATGCCTCTCTGATCGGCCTGTCCAGCCGGCTGAGCACTCGCACGCTCGT
258 CCCCAGCTCGCAAATTATGCCTCTCTGACCGGCCTCTCCAGCCGACTGAGCACTCCCACGCTCGT
* * *
11011393 TTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGT
323 TTTCTGGGTTAACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGAAGTTCATTCCCAGT
*
11011458 CTAAGATCAGACCGGATCGAGGGTTACGACAGCAGGATCGGTAGCACGTAGGGGGGATCGGGCCG
388 CTAAGATCAGACCGGATCGAGGGTTACGACAGCAGGATCGGTAGCACGTAGAGGGGATCGGGCCG
* * *
11011523 ATCGCCGGCTTACGTATTCTACCTCTTCGGTCAGCTGAGCGCCCGCACGCCTGTTTCGTTGGTTG
453 ATCGCCGGCTTACGCATTCTACCTCTTCGATCAGCTGAGCACCCGCACGCCTGTTTCGTTGGTTG
* *
11011588 GCTTAGGCCTATGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCGACAGCACGCAGAGGGGGA
518 GCTTAGGCCTAGGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCGACAACACGCAGAGGGGGA
* * * **
11011653 CCGGGTCGATCCCAGCTTGCGCATTATGCCTCTCCGATCGGTTCAGTGCCCGAACGCTCGTTTCG
583 CCAGGCCGATCCCAGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCACCCGAACGCTCGTTTCG
11011718 TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
648 TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
11011758 ATCAGACCGA
Statistics
Matches: 608, Mismatches: 74, Indels: 11
0.88 0.11 0.02
Matches are distributed among these distances:
687 1 0.00
688 73 0.12
689 453 0.75
690 81 0.13
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (688 bp):
ATACCGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAAGATCGATAGC
ACACAGAGGGGATCGGGCCGTCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCAC
ACGCCCGTTTCGTGGATTAGCTTAGGCATACAGAATTCATTCCATGTCTAAGCCCCAGCCAGACC
AAGGGTTGTGACAGCAGGACCGGTAGCGGAATCGACAGCATACATAGGGGGACCAAGCTGATCCC
CAGCTCGCAAATTATGCCTCTCTGACCGGCCTCTCCAGCCGACTGAGCACTCCCACGCTCGTTTT
CTGGGTTAACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTA
AGATCAGACCGGATCGAGGGTTACGACAGCAGGATCGGTAGCACGTAGAGGGGATCGGGCCGATC
GCCGGCTTACGCATTCTACCTCTTCGATCAGCTGAGCACCCGCACGCCTGTTTCGTTGGTTGGCT
TAGGCCTAGGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCGACAACACGCAGAGGGGGACCA
GGCCGATCCCAGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCACCCGAACGCTCGTTTCGTGG
GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGG
Found at i:11011447 original size:26 final size:26
Alignment explanation
Indices: 11011410--11011462 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11011400 GTTGACTTAG
*
11011410 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
11011436 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
11011462 G
1 G
11011463 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:11011919 original size:26 final size:26
Alignment explanation
Indices: 11011889--11011941 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11011879 GTTGGCTTAG
11011889 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
11011915 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11011941 G
1 G
11011942 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11011954 original size:689 final size:673
Alignment explanation
Indices: 11010421--11012298 Score: 1845
Period size: 689 Copynumber: 2.8 Consensus size: 673
11010411 GATCAGACCG
* * * * * *
11010421 AGGGTTGC-GACAGCAAGATCGATAGCACACAGGGGGGATCGGGTCG-TCCCCGACTTACGCATT
1 AGGGTTGCAG-CAGCAGGATCGACAGCACACAGAGGGGATCGGGCCGATCCCCGTCTTGCGCATT
* * * * * * * * * *
11010484 CTGCCTCTCCGGTCGGCTGAGCGCCCAGATGCCCGTTTCGTGGGTTAGCTTAGGCATACGGAATT
65 CTGCCACTTCGGCCGGCTGAGCGCCCACACGCCCGTTTCATGGATTGGCTTAGGCATACAGAGTT
* * * ** *
11010549 CATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGATAGCAGGACCGGTAGTGGAATCGACA
130 CATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCAGGACCGGTAGCGGAATCGACA
* * * *
11010614 GCATGCATAGGGGGACCGGGCTGATCCTCAGCTCGCGCATTATGCCTCTCTGACCGGCCTCTCCA
195 GCATACATAGGGGGACC-GGCTGATCCCCAGCTCGCGCATTATGCCTCTCTGATCGGCCTGTCCA
* * * * *
11010679 GCCGATTGAGCACTCCCACGCTCGTTTTCTGGGTTAACTTAGGCATATGGAGTTCATCCCCAATC
259 GCCGACTGAGCACTCGCACGCTCGTTTTATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTC
* * *
11010744 TAAGCATACGGAGTTTATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGCAGCAGGATCG
324 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTAC-GCAGCAGGATCG
* * ** *
11010809 GTAGCACGTAGAGGGGATCGGGCCGATCGCTGGCTTGTGCATTCTACCTCTTCGATCAGCTGAGC
388 GTAGCACGTAGGGGGGATCGGGCCGATCGCCGGCTTACGCATTCTACCTCTTCGGTCAGCTGAGC
* * *
11010874 ACCCGCACGCCGTTTCTTTGGTTGGCTTAGGCCTAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
453 GCCCGCACGCCGTTTCATTGGTTGGCTTAGGCCTA-GGAGTTCATTCCATGTCTAAGCCCCAACC
** * * * * *
11010939 GGAGCGGCAACACGCAGAGGGGGGCCAGGCCGATCCCCAGCTTGCGCATTATGCCTTTTCGGCTG
517 AAACCGACAACACGCAGAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCTG
*
11011004 GCTCAGCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
582 GCTCAGCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAG
*
11011069 GATACGGAGTTCGTTCCCAGTCTAAGATCAGATTGGATC
647 GATAC-GA--T-G-TACCAG--T-AGATCA-A-T-GA-C
** * *
11011108 GAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGATCGGGCCGATCCCCGTCTTGCGTATT
1 -AGGGTTGCAGCAGCAGGATCGACAGCACACAGAGGGGATCGGGCCGATCCCCGTCTTGCGCATT
* * * **
11011173 CTGCCTCTTCGGCTGGTTGAGCGCCCACACGCCCGTTTTGTGGATTGGCTTAGGCATACAGAGTT
65 CTGCCACTTCGGCCGGCTGAGCGCCCACACGCCCGTTTCATGGATTGGCTTAGGCATACAGAGTT
11011238 CATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCAGGACCGGTAGCGGAATCGACA
130 CATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCAGGACCGGTAGCGGAATCGACA
* ***
11011303 GCATACATAGGGGGACCAAGCTGATCCCCAGCTCGTAAATTATGCCTCTCTGATCGGCCTGTCCA
195 GCATACATAGGGGGACC-GGCTGATCCCCAGCTCGCGCATTATGCCTCTCTGATCGGCCTGTCCA
* * *
11011368 GCCGGCTGAGCACTCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
259 GCCGACTGAGCACTCGCACGCTCGTTTTATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTC
11011433 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGACAGCAGGATCG
324 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACG-CAGCAGGATCG
*
11011498 GTAGCACGTAGGGGGGATCGGGCCGATCGCCGGCTTACGTATTCTACCTCTTCGGTCAGCTGAGC
388 GTAGCACGTAGGGGGGATCGGGCCGATCGCCGGCTTACGCATTCTACCTCTTCGGTCAGCTGAGC
*
11011563 GCCCGCACGCCTGTTTCGTTGGTTGGCTTAGGCCTATGGAGTTCATTCCATGTCTAAGCCCCAAC
453 GCCCGCACGCC-GTTTCATTGGTTGGCTTAGGCCTA-GGAGTTCATTCCATGTCTAAGCCCCAAC
* * * *
11011628 CAAACCGACAGCACGCAGAGGGGGACCGGGTCGAT-CCCAGCTTGCGCATTATGCCTCTCC-GAT
516 CAAACCGACAACACGCAGAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCT
* **
11011691 CGGTTCAGTGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCT
581 -GGCTCAGCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT-CCATGTCT
11011755 AA-GAT-C-A-G-ACC-G-A-A-C-A-GA-
644 AAGGATACGATGTACCAGTAGATCAATGAC
** * * *
11011773 A-GGTTGC-GACAGCAGGATCGACAGCACATGGGGGGGATCGGGTCGGTCCCCAG-CTTGCGCAT
1 AGGGTTGCAG-CAGCAGGATCGACAGCACACAGAGGGGATCGGGCCGATCCCC-GTCTTGCGCAT
* * * * *
11011835 TCTGCCAC-TCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
64 TCTGCCACTTC-GGCCGGCTGAGCGCCCACACGCCCGTTTCATGGATTGGCTTAGGCATACAGAG
11011899 TTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGT
128 TTCATTCCATG--T---C-TA---AG-------CC---C------CAG-CCGGACCAAGGGTTGT
* *** * * * * * *
11011964 AGCAGCAGGACCAACAGCAGG-ATTGGCAGC--ACGTAGGGGGGATCGGGTCGATCCCCAGCTTG
167 GGCAGCAGGACCGGTAGC-GGAATCGACAGCATACATA-GGGGGACCGGCT-GATCCCCAGCTCG
* * * *
11012026 CGCATTCTGCCTCTCCGGTCGG-CTG---A----AC---GC-CT-GCACGCTCGTTTCATGGGTT
229 CGCATTATGCCTCTCTGATCGGCCTGTCCAGCCGACTGAGCACTCGCACGCTCGTTTTATGGGTT
* *
11012078 GACTTAGGCATATGAAGTTCATCCCCAGTCTAAGCATACGTAGTTCATTCCCAGTCTAAGATC-G
294 GACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAG
** * * * * ** * * * *
11012142 AACTAGACCGAGGGTTGCGCAGTAGGGTCGACAGCACGCAGGGGGGACCGGGCCAATCCCCGGCT
359 -ACCGGATCGAGGGTTACGCAGCAGGATCGGTAGCACGTAGGGGGGATCGGGCCGATCGCCGGCT
* * * * * ** * * *
11012207 TACACATTCTGCCT-TTCGGTCGGTTGAGTGCCCATATGCCCGTTTCATGGGTTGGCTTAGGCAT
423 TACGCATTCTACCTCTTCGGTCAGCTGAGCGCCCGCACG-CCGTTTCATTGGTTGGCTTAGGCCT
11012271 AGAGAGTTCATTCCATGTCTAAGCCCCA
487 AG-GAGTTCATTCCATGTCTAAGCCCCA
11012299 GCCAGACGAG
Statistics
Matches: 1013, Mismatches: 136, Indels: 97
0.81 0.11 0.08
Matches are distributed among these distances:
662 3 0.00
663 110 0.11
664 2 0.00
665 1 0.00
667 2 0.00
668 1 0.00
669 2 0.00
670 1 0.00
672 4 0.00
673 65 0.06
674 53 0.05
675 92 0.09
676 2 0.00
677 2 0.00
678 1 0.00
679 4 0.00
680 1 0.00
681 1 0.00
682 1 0.00
684 1 0.00
685 1 0.00
687 10 0.01
688 83 0.08
689 488 0.48
690 82 0.08
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (673 bp):
AGGGTTGCAGCAGCAGGATCGACAGCACACAGAGGGGATCGGGCCGATCCCCGTCTTGCGCATTC
TGCCACTTCGGCCGGCTGAGCGCCCACACGCCCGTTTCATGGATTGGCTTAGGCATACAGAGTTC
ATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCAGGACCGGTAGCGGAATCGACAG
CATACATAGGGGGACCGGCTGATCCCCAGCTCGCGCATTATGCCTCTCTGATCGGCCTGTCCAGC
CGACTGAGCACTCGCACGCTCGTTTTATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTA
AGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGCAGCAGGATCGGTA
GCACGTAGGGGGGATCGGGCCGATCGCCGGCTTACGCATTCTACCTCTTCGGTCAGCTGAGCGCC
CGCACGCCGTTTCATTGGTTGGCTTAGGCCTAGGAGTTCATTCCATGTCTAAGCCCCAACCAAAC
CGACAACACGCAGAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCTGGCTC
AGCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGGATA
CGATGTACCAGTAGATCAATGAC
Found at i:11012115 original size:26 final size:26
Alignment explanation
Indices: 11012085--11012137 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11012075 GTTGACTTAG
*
11012085 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
11012111 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
11012137 G
1 G
11012138 ATCGAACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:11012115 original size:196 final size:196
Alignment explanation
Indices: 11011781--11012140 Score: 551
Period size: 196 Copynumber: 1.8 Consensus size: 196
11011771 GAAGGTTGCG
* * *
11011781 ACAGCAGGATCGACAGCACATGGGGGGGATCGGGTCGGTCCCCAGCTTGCGCATTCTGCCACTCT
1 ACAGCAGGATCGACAGCACATAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCACTCC
** * * *
11011846 GGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 GGCCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATGT
*
11011911 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTAGCAGCAGGACC
131 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTAGCAGCAGGACC
11011976 A
196 A
* * * *
11011977 ACAGCAGGATTGGCAGCACGTAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCC
1 ACAGCAGGATCGACAGCACATAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCACTCC
* * *
11012042 GGTCGGCTGAACGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATATGAAGTTCATCCCCA-G
66 GGCCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCAT-CCCATG
*
11012106 TCTAAGCATACGTAGTTCATTCCCAGTCTAAGATC
130 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
11012141 GAACTAGACC
Statistics
Matches: 146, Mismatches: 17, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
196 143 0.98
197 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (196 bp):
ACAGCAGGATCGACAGCACATAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCACTCC
GGCCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTAGCAGCAGGACC
A
Found at i:11013494 original size:159 final size:158
Alignment explanation
Indices: 11013287--11013664 Score: 397
Period size: 159 Copynumber: 2.4 Consensus size: 158
11013277 ATCGGATGAG
* * * *
11013287 CGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG
1 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCC-AG
* * * * * *
11013352 -T-AGGA-CGAGGGTTGTGGCAGCGGGACCGATAGCACGCAGAGGGGGATCGGGTCGATCCTCGG
65 ATCA-GACCGAGGGTTGCGGCAACAGGACCGACAGCAAGCA-AGGGGGATCGAGTCGATCCTCGG
* * *
11013414 CTTGCTCATTATGCCTCT-CGCGTCGGTTCAA
128 CTTACGCATTATGCCTCTCCG-GTCGGCTCAA
** * * **
11013445 CGCCCGCAACGCTCGTTTCGTGGGTTAACTTCGGCATATGGAGTTCATTCCCCA-ATCTAAGATC
1 CGCCCGC-ACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATT--CCATGTCTAAGCCC
* * * *
11013509 GGATCAGACCGAGGGTTGCGGCAACAGGATCGACAGCAAGTACGGGGGATCGAGTCGATCCTCGG
63 AGATCAGACCGAGGGTTGCGGCAACAGGACCGACAGCAAGCAAGGGGGATCGAGTCGATCCTCGG
* * *
11013574 CTTACGCATTCTGCCTCTCCGGTCGGCTGAG
128 CTTACGCATTATGCCTCTCCGGTCGGCTCAA
* * *
11013605 CACCCGCAGGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAATTCATTCCATGTCTAAGC
1 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
11013665 ATACGGAGTT
Statistics
Matches: 178, Mismatches: 34, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
157 3 0.02
158 13 0.07
159 71 0.40
160 59 0.33
161 32 0.18
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCAGA
TCAGACCGAGGGTTGCGGCAACAGGACCGACAGCAAGCAAGGGGGATCGAGTCGATCCTCGGCTT
ACGCATTATGCCTCTCCGGTCGGCTCAA
Found at i:11013730 original size:12 final size:12
Alignment explanation
Indices: 11013713--11013754 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
11013703 GAGGGTTGCG
11013713 GCAGCAGGACCA
1 GCAGCAGGACCA
*
11013725 GCAGCAGGATC-
1 GCAGCAGGACCA
*
11013736 GACAACAGGACCA
1 G-CAGCAGGACCA
11013749 GCAGCA
1 GCAGCA
11013755 AGATCGGTAG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 1 0.04
12 22 0.92
13 1 0.04
ACGTcount: A:0.36, C:0.31, G:0.31, T:0.02
Consensus pattern (12 bp):
GCAGCAGGACCA
Found at i:11015359 original size:158 final size:157
Alignment explanation
Indices: 11015040--11015373 Score: 440
Period size: 158 Copynumber: 2.1 Consensus size: 157
11015030 AAGCATACAA
* * *
11015040 AGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGACAGCAGGATATGCAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTACGACAGCAGGATATGCAGCACGCAC
* * * ** * * * * *
11015105 GGGGGATTGGGTCGATCCTGGCTTGTGCATTCTACCTCTCTGAGAGGCTGAGCGCTCGTATGCTT
66 GGGGGATCGAGTCGATCCTGACTTACGCATTCTACCTCTCTGACAGACTGAGCGCCCGCACGCTT
*
11015170 GTTTCGTGGGTTGACTTAGGCATACGG
131 GTTTCGTGGGTTGACTTACGCATACGG
*
11015197 AGTTCATTCCCAGTCTAAGATCAGACCAGA-CTGAGGGTTACGACAGCAGGAT-TGACAGCACGC
1 AGTTCATTCCCAGTCTAAGATCAAACCAGATC-GAGGGTTACGACAGCAGGATATG-CAGCACGC
* * *
11015260 ACGGGGGATCGAGTCGGTCCCTGACTTACGCATTCTACCTCTCTGACCGACTGAGCTCCCGCACG
64 ACGGGGGATCGAGTCGAT-CCTGACTTACGCATTCTACCTCTCTGACAGACTGAGCGCCCGCACG
*
11015325 CTTGTTTCGTGGGTTGGCTTACGCATACGG
128 CTTGTTTCGTGGGTTGACTTACGCATACGG
11015355 AGTTCATT-CCATGTCTAAG
1 AGTTCATTCCCA-GTCTAAG
11015374 CATACAAAGT
Statistics
Matches: 154, Mismatches: 19, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
156 3 0.02
157 72 0.47
158 79 0.51
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (157 bp):
AGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTACGACAGCAGGATATGCAGCACGCAC
GGGGGATCGAGTCGATCCTGACTTACGCATTCTACCTCTCTGACAGACTGAGCGCCCGCACGCTT
GTTTCGTGGGTTGACTTACGCATACGG
Found at i:11015579 original size:26 final size:26
Alignment explanation
Indices: 11015550--11015602 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11015540 GTTGACCTAG
*
11015550 GCATACGGAG-TTCATCCCTAGTCTAA
1 GCATACAGAGTTTCATCCC-AGTCTAA
*
11015576 GCATACAGAGTTTCTTCCCAGTCTAA
1 GCATACAGAGTTTCATCCCAGTCTAA
11015602 G
1 G
11015603 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTTCATCCCAGTCTAA
Found at i:11015935 original size:26 final size:26
Alignment explanation
Indices: 11015905--11015957 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11015895 GTTGACTTAG
11015905 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
11015931 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11015957 G
1 G
11015958 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11016430 original size:158 final size:156
Alignment explanation
Indices: 11015931--11016431 Score: 465
Period size: 159 Copynumber: 3.2 Consensus size: 156
11015921 CCCAGTCTAA
* * * *
11015931 GCATATAGAGTTCATTCC-TAGTCTAAGATCGGATTGGATCGAGGGTTGTGGCAGCAGGATCGAT
1 GCATATGGAGTTCATTCCAT-GTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
11015995 AGCACGCA-GGGGGACTGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTTCGATCGGCTGAGCGC
65 AGCACGTAGGGGGGAC-AGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * *
11016059 CAGCACGCCCATTTCGTGGGTTGGCTTAG
129 C-GAACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * ** *
11016088 GCATAGGGAGTTCATTCTATGTCTAAG-CCCCAACTGAACCGAGGGTTGTGGCAGTGGGA-CTGG
1 GCATATGGAGTTCATTCCATGTCTAAGATCGGATC-GGACCGAGGGTTGTGGCAGCAGGATC-GA
* * * * * * *
11016151 CAGCACGTAGAAGGGGACCGAGCCAATCCCTGGCTTGCGCATTATGCCTCTCCGACCGGCTCAAC
64 CAGCACGTAG-GGGGGACAG-GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* *
11016216 GCCCGAACGCTCGTTTCATGGGTTGACTTAG
127 G-CCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * * * ** *
11016247 GCATACGAAGTTCATTCCCA-ATCTAAGATCGGATCGGACCGAGGGTTGCGATAGCAGGATCAAC
1 GCATATGGAGTTCATT-CCATGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * *
11016311 AGCACGTAGGGGGGATCAGGCCGATCCCCGGCTTGCGTATTCTGCCTCTCCTG-CCGACTGAGTG
65 AGCACGTAGGGGGGA-CAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC-GACCGGCTGAGCG
*
11016375 CACGTACGCTCGTTTCGTGGGTTGGCTTAG
128 C-CGAACGCTCGTTTCGTGGGTTGGCTTAG
11016405 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCATGTCTAAG
11016432 CATACGGAGT
Statistics
Matches: 267, Mismatches: 63, Indels: 27
0.75 0.18 0.08
Matches are distributed among these distances:
156 3 0.01
157 54 0.20
158 87 0.33
159 115 0.43
160 8 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGTAGGGGGGACAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCG
AACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:11016441 original size:26 final size:26
Alignment explanation
Indices: 11016405--11016457 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11016395 GTTGGCTTAG
*
11016405 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11016431 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11016457 G
1 G
11016458 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11016570 original size:184 final size:184
Alignment explanation
Indices: 11016247--11016616 Score: 501
Period size: 184 Copynumber: 2.0 Consensus size: 184
11016237 GTTGACTTAG
* * * * *
11016247 GCATACGAAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTGCGATAGCAGGATCAACA
1 GCATACGAAGTTCATTCCCAATCTAAGATCGGACCGAACCAAGGGTTGCAACAGCAGGATCAACA
* * *
11016312 GCACGTAGGGGGGATCAGGCCGATCCCCGGCTTGCGTATTCTGCCTCTCCTGCCGACTGAGTGCA
66 GCACGCAGGAGGGATCAGGCCGATCCCCGGCTTGCATATTCTGCCTCTCCTGCCGACTGAGTGCA
* *
11016377 CGTACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAA
* * * ***
11016431 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTGCAACAGTAGGATTGGCA
1 GCATACGAAGTTCATTCCCAATCTAAGATCGGACCGAACCAAGGGTTGCAACAGCAGGATCAACA
* * * * *
11016496 GCATGCAGTGAGGGATCGGGCTGATCCCCGGCTTGCATATTCTGCCTCTCC-GACCG-GTGAGTT
66 GCACGCAG-GAGGGATCAGGCCGATCCCCGGCTTGCATATTCTGCCTCTCCTG-CCGACTGAGTG
* *
11016559 CCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAA
129 CACGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAA
11016615 GC
1 GC
11016617 CCCAGTCGGA
Statistics
Matches: 161, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
184 120 0.75
185 41 0.25
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (184 bp):
GCATACGAAGTTCATTCCCAATCTAAGATCGGACCGAACCAAGGGTTGCAACAGCAGGATCAACA
GCACGCAGGAGGGATCAGGCCGATCCCCGGCTTGCATATTCTGCCTCTCCTGCCGACTGAGTGCA
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAA
Found at i:11016803 original size:26 final size:26
Alignment explanation
Indices: 11016774--11016824 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11016764 TGACTTAGGC
11016774 ATACGGAGTTCATCCCCAGTCTAAGG
1 ATACGGAGTTCATCCCCAGTCTAAGG
* *
11016800 ATACGGAGTTCATTCTCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
11016825 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGG
Found at i:11017333 original size:26 final size:26
Alignment explanation
Indices: 11017297--11017349 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11017287 GTTGACTTAG
11017297 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
11017323 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11017349 G
1 G
11017350 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11017546 original size:26 final size:26
Alignment explanation
Indices: 11017494--11017546 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11017484 GTTGGCTTAG
*
11017494 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
11017520 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
11017546 G
1 G
11017547 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:11021671 original size:158 final size:157
Alignment explanation
Indices: 11021185--11021686 Score: 542
Period size: 158 Copynumber: 3.2 Consensus size: 157
11021175 CCCAGTCCAA
* * *
11021185 GCATACGGAGTTCATT-CATAGTCTAAGATCGAACCAGACCAAGGGTTGCGACAGCAGGATCGGT
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCG-ACCAGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * *
11021249 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTTTCCGACCAGTTGAGCGC
64 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTTTCTGGCCAGCTGAGCGC
*
11021314 CCGTACGGCT-GTTTCGTGGGTTGGCTTAG
129 CCGAAC-GCTCGTTTCGTGGGTTGGCTTAG
* ** * * * ** *
11021343 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCCGACCGAGGGTTGTGGCAGTGGGACCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGA-CCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * *
11021408 GCACGCAGAGGAGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTTTCTAGCCAGCTCAGTGC
65 GCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTTTCTGGCCAGCTGAGCGC
* * *
11021473 CCGCACGCTCGTTTTGTGGGTTGACTTAG
129 CCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * * * **
11021502 ACATACAGAGTTCATTCCTTGTCTAAGATTCGACCAGACCGAGGGTTGCGGTAGCAGGATCAACA
1 GCATACGGAGTTCATTCCATGTCTAAGA-TCGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * ** * *
11021567 GCACGCAGGGGGGACTGGACTGGTCCCCGACTTATGCATTCTGCCTCTT-TGGCCAACTGAGCAC
65 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCT-TTCTGGCCAGCTGAGCGC
*
11021631 CCGAATGCTCGTTTCGTGGGTTGGCTTAG
129 CCGAACGCTCGTTTCGTGGGTTGGCTTAG
11021660 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
11021687 CATACGGAGT
Statistics
Matches: 276, Mismatches: 62, Indels: 12
0.79 0.18 0.03
Matches are distributed among these distances:
157 1 0.00
158 145 0.53
159 128 0.46
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
CACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTTTCTGGCCAGCTGAGCGCCC
GAACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:11021711 original size:26 final size:26
Alignment explanation
Indices: 11021660--11021712 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11021650 GTTGGCTTAG
*
11021660 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
11021686 GCATACGGAGTTCATTCC-TAGCCTAA
1 GCATACGGAGTTCATTCCAT-GCCTAA
11021712 G
1 G
11021713 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:11022076 original size:26 final size:26
Alignment explanation
Indices: 11022040--11022091 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11022030 TTGACTTAGC
11022040 CATACAGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
* * *
11022066 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
11022092 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAG
Found at i:11022417 original size:26 final size:26
Alignment explanation
Indices: 11022381--11022433 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11022371 GTTGACTTAT
* *
11022381 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCGCAGTCTAA
11022407 GCATACAGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCGCAGTCTAA
11022433 G
1 G
11022434 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCGCAGTCTAA
Found at i:11022661 original size:341 final size:341
Alignment explanation
Indices: 11021628--11022748 Score: 1016
Period size: 341 Copynumber: 3.2 Consensus size: 341
11021618 GCCAACTGAG
* * *
11021628 CACCCGAATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCATAC
1 CACCCGCACGCTCGTTTCGTGGGTTGACTTA-GCATACGGAGTTCATTCCCA-GTCTAAGCATAC
* * *
11021692 GGAGTTCATTCCTAGCCTAAGATCGGACCGGATCGAGGGTTACGCAGTAGGACCAGCAGCAGGAT
64 AGAGTTCATTCCTAGTCTAAGATCGAACCGGATCGAGGGTT-----GT-GG--CAGCA--A-GAT
* * * ** * ** *
11021757 CGACAGCACGCAAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTTTGCCTCTCCGGTCAGTTGA
118 CGGCAGCACGCAAGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCAGCCTCTACGACCAGCTGA
* * * * * * * * * * *
11021822 GCACCTGCACGCTCGTTTCATTGGTTGGCTTCGGCATACGAAGTTCATTCTATGTCCAAGCCCCA
183 GCGCCCGCACGCCCGTTTCATGGGTT-GCTTAGGCATAAGGAGTTAATTCCACGTCTAAGCCCCA
** * * * * * *
11021887 GCTAGACCGAGGGTTGTGGCAGTAGGACCGACAGCGGGATCGATAGCACACAGAGGGGGACCGGG
247 GCCGGATCGAGGGTTATGGCAG-CGG---GAC--C---A--G-CAGCACGCAGAGGAGGACCGGG
* * * **
11021952 CTGATCCCAGGCTTGCACATTATGCCTCTTCGGTCGGCCTCTCCGGC-CGG
300 CCGATCCCTGGCTTGCACATTATGCCT-TTC---CAG-----CCGGCTCAA
* * *
11022002 CTGAGCGTCCGCATGCTCGTTTCGTGGGTTGACTTAGCCATACAGAGTTCATCCCCAGTCTAAGC
1 C--A-C--CCGCACGCTCGTTTCGTGGGTTGACTTAG-CATACGGAGTTCATTCCCAGTCTAAGC
* * * *
11022067 ATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAAGATCGGTAGC
60 ATACAGAGTTCATTCCTAGTCTAAGATCGAACCGGATCGAGGGTTGTGGCAGCAAGATCGGCAGC
* * * *
11022132 ACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTACGACCAGCTGGGTGCCCG
125 ACGCAAGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCAGCCTCTACGACCAGCTGAGCGCCCG
* * *
11022197 CACGCCCGTTTCGTGGGTTGCTTAGGCATAAGGAGTTCATTCCACGTCTAAGCCCCATCCGGATC
190 CACGCCCGTTTCATGGGTTGCTTAGGCATAAGGAGTTAATTCCACGTCTAAGCCCCAGCCGGATC
* * * * * **
11022262 GAGGGTTATGGCAGCGGTACCAGTAGCACGCCGGGGGGGACCGGGCCGATCCCTGGCTTGTGCAT
255 GAGGGTTATGGCAGCGGGACCAGCAGCACGCAGAGGAGGACCGGGCCGATCCCTGGCTTGCACAT
* * *
11022327 TATGCCTCTT-CGGTCGGCTCAG
320 TATGCCT-TTCCAGCCGGCTCAA
* *
11022349 CACCCGCACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCTCAGTCTAAGCATACA
1 CACCCGCACGCTCGTTTCGTGGGTTGACTTA-GCATACGGAGTTCATTCCCAGTCTAAGCATACA
* *
11022414 GAGTTCATTCGC-AGTCTAAGATCGAACCGGA-C-TGGGTTGTGGCAGCAGGATCGGCAGCACGC
65 GAGTTCATTC-CTAGTCTAAGATCGAACCGGATCGAGGGTTGTGGCAGCAAGATCGGCAGCACGC
* * * * * *
11022476 AAGGGGGACTAGG-CTGATCCTCGTCTTGCGCATTCAGCCTCTTCGACCGGCTGAGCGCCCGCAT
129 AAGGGGGACCAGGTC-GATCCCCGGCTTGCGCATTCAGCCTCTACGACCAGCTGAGCGCCCGCAC
* ** *
11022540 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATTTCTAAGCCCCAGCTGGATCGA
193 GCCCGTTTCATGGGTT-GCTTAGGCATAAGGAGTTAATTCCACGTCTAAGCCCCAGCCGGATCGA
* * *
11022605 GGGTTGTGGCAGCGGGACC-GACAGCACGCAGAGGAGGATCGGGTCGATCCCTGGCTTGCACATT
257 GGGTTATGGCAGCGGGACCAG-CAGCACGCAGAGGAGGACCGGGCCGATCCCTGGCTTGCACATT
11022669 ATGCCTTTCCAGCCGGCTCAA
321 ATGCCTTTCCAGCCGGCTCAA
* *
11022690 CGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 CACCCGCACGCTCGTTTCGTGGGTTGACTTA-GCATACGGAGTTCATTCCCAGTCTAAG
11022749 ATCGGACTGA
Statistics
Matches: 642, Mismatches: 91, Indels: 61
0.81 0.11 0.08
Matches are distributed among these distances:
339 1 0.00
340 97 0.15
341 164 0.26
342 81 0.13
343 2 0.00
344 1 0.00
345 1 0.00
346 4 0.01
347 3 0.00
351 3 0.00
355 45 0.07
356 1 0.00
358 1 0.00
361 1 0.00
363 2 0.00
366 2 0.00
367 49 0.08
368 77 0.12
369 1 0.00
371 5 0.01
373 2 0.00
374 3 0.00
376 1 0.00
377 1 0.00
378 1 0.00
379 90 0.14
380 3 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (341 bp):
CACCCGCACGCTCGTTTCGTGGGTTGACTTAGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
AGTTCATTCCTAGTCTAAGATCGAACCGGATCGAGGGTTGTGGCAGCAAGATCGGCAGCACGCAA
GGGGGACCAGGTCGATCCCCGGCTTGCGCATTCAGCCTCTACGACCAGCTGAGCGCCCGCACGCC
CGTTTCATGGGTTGCTTAGGCATAAGGAGTTAATTCCACGTCTAAGCCCCAGCCGGATCGAGGGT
TATGGCAGCGGGACCAGCAGCACGCAGAGGAGGACCGGGCCGATCCCTGGCTTGCACATTATGCC
TTTCCAGCCGGCTCAA
Found at i:11022695 original size:159 final size:160
Alignment explanation
Indices: 11022447--11022909 Score: 451
Period size: 159 Copynumber: 2.9 Consensus size: 160
11022437 GAACCGGACT
* * * ** ** * * *
11022447 GGGTTGTGGCAGCAGGATCGGCAGCACGCAAG-GGGGACTAGGCTGATCCTCGTCTTGCGCATTC
1 GGGTTGTGGCAGCAGGACCGACAGCACGCAAGCGAGGACCGGGCCAATCCCCGGCTTGCACATT-
* * *
11022511 A-GCCTCTT-CGACCGGCTGAGCGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGT
65 ATACCT-TTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
* * * * *
11022574 TAATTCCATTTCTAAGCCCCAG-CTGGATCGA
129 TCATTCCATGTCTAAGCACCAGACTGAACCGA
* * * * *
11022605 GGGTTGTGGCAGCGGGACCGACAGCACGCAGAG-GAGGATCGGGTCGATCCCTGGCTTGCACATT
1 GGGTTGTGGCAGCAGGACCGACAGCACGCA-AGCGAGGACCGGGCCAATCCCCGGCTTGCACATT
* * * * * * *
11022669 ATGCCTTTCC-AGCCGGCTCAACGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGT
65 ATACCTTTCCGA-CCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
* *
11022733 TCATTCCCA-GTCTAAG-ATCGGACTGAACCGA
129 TCATT-CCATGTCTAAGCACCAGACTGAACCGA
* * * * *
11022764 GGGTTGTGGTAGCAGGATCGACAGCACGCAAGCGGGGACCGGGCCAATCCCCGGCTTGCACTTTC
1 GGGTTGTGGCAGCAGGACCGACAGCACGCAAGCGAGGACCGGGCCAATCCCCGGCTTGCACATTA
*
11022829 TACCTTTCCGACCGGCTGAGCGCCTGCACGCTCC-TTTCGTGGGTTGGCTTAGGCATACGGG-GT
66 TACCTTTCCGACCGGCTGAGCGCCCGCACGC-CCGTTTCGTGGGTTGGCTTAGGCATA-GGGAGT
11022892 TCATTCCATGTCTAAGCA
129 TCATTCCATGTCTAAGCA
11022910 TATGGAGTTC
Statistics
Matches: 247, Mismatches: 46, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
158 38 0.15
159 201 0.81
160 8 0.03
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (160 bp):
GGGTTGTGGCAGCAGGACCGACAGCACGCAAGCGAGGACCGGGCCAATCCCCGGCTTGCACATTA
TACCTTTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTC
ATTCCATGTCTAAGCACCAGACTGAACCGA
Found at i:11022919 original size:26 final size:26
Alignment explanation
Indices: 11022881--11022933 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11022871 GTTGGCTTAG
*
11022881 GCATACGGGGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
11022907 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11022933 G
1 G
11022934 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11023140 original size:26 final size:26
Alignment explanation
Indices: 11023098--11023196 Score: 135
Period size: 26 Copynumber: 3.8 Consensus size: 26
11023088 TTAGGAATAC
* *
11023098 GGAGTTCATCCCCAGTCGAAGCATAA
1 GGAGTTCATTCCCAGTCTAAGCATAA
* * *
11023124 GGAGTTCATTCCAAGTCTAAGCCTAT
1 GGAGTTCATTCCCAGTCTAAGCATAA
* *
11023150 GGAGTTCATACCCAGTCTAAGCATAC
1 GGAGTTCATTCCCAGTCTAAGCATAA
11023176 GGAGTTCATTCCCAGTCTAAG
1 GGAGTTCATTCCCAGTCTAAG
11023197 ATCAGATTGG
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 63 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GGAGTTCATTCCCAGTCTAAGCATAA
Found at i:11023180 original size:52 final size:52
Alignment explanation
Indices: 11023098--11023196 Score: 162
Period size: 52 Copynumber: 1.9 Consensus size: 52
11023088 TTAGGAATAC
*
11023098 GGAGTTCATCCCCAGTCGAAGCATAAGGAGTTCATTCCAAGTCTAAGCCTAT
1 GGAGTTCATACCCAGTCGAAGCATAAGGAGTTCATTCCAAGTCTAAGCCTAT
* * *
11023150 GGAGTTCATACCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
1 GGAGTTCATACCCAGTCGAAGCATAAGGAGTTCATTCCAAGTCTAAG
11023197 ATCAGATTGG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 43 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.25
Consensus pattern (52 bp):
GGAGTTCATACCCAGTCGAAGCATAAGGAGTTCATTCCAAGTCTAAGCCTAT
Found at i:11023471 original size:159 final size:158
Alignment explanation
Indices: 11023253--11023649 Score: 401
Period size: 159 Copynumber: 2.5 Consensus size: 158
11023243 GGGGGATCGC
* * * * * * *
11023253 GTCGATCTTCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGTGCCCGCATGCCCATTTTGTGG
1 GTCGATCCTCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCA-GCTCATTTCGTGG
* * * * * * *
11023318 GTTGCCTTAGGCATAGGGA-GTTCATT-CCA-TGTCTAAGCCCTA-ACCGGATCGAGGGTTGTGG
65 GTTGACTTAGGCATAGCGACGTTCATTCCCACT-T-TAAGACC-AGACCGGACCAAGGGTTGCGA
* * *
11023379 CAGCGGGACCTACAGCACGCAGAAGG-GGACTGG
127 CAGCAGGACCGACAGCACGCAG--GGAGGACCGG
* * * * *
11023412 GTCGATCCTCGACTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACACTCATTTCGTGA
1 GTCGATCCTCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCA-GCTCATTTCGTGG
* *
11023477 GTTGACTTAGGCATA-CGACGTTCATTCCCACTTTGAGATCAGACCGGACCAAGGGTTGCGACAG
65 GTTGACTTAGGCATAGCGACGTTCATTCCCACTTTAAGACCAGACCGGACCAAGGGTTGCGACAG
* *
11023541 CAGGATCGATAGCACGCAGGGAGGACCGG
130 CAGGACCGACAGCACGCAGGGAGGACCGG
* * * * *
11023570 GCCGATCCCCGTCTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCCCGTAGCTCATTTCGTGGG
1 GTCGATCCTCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCAGCTCATTTCGTGGG
*
11023635 TTGGCTTAGGCATAG
66 TTGACTTAGGCATAG
11023650 TTCATTCCAC
Statistics
Matches: 194, Mismatches: 38, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
157 27 0.14
158 52 0.27
159 110 0.57
160 4 0.02
161 1 0.01
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (158 bp):
GTCGATCCTCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCAGCTCATTTCGTGGG
TTGACTTAGGCATAGCGACGTTCATTCCCACTTTAAGACCAGACCGGACCAAGGGTTGCGACAGC
AGGACCGACAGCACGCAGGGAGGACCGG
Found at i:11024173 original size:343 final size:345
Alignment explanation
Indices: 11023414--11024333 Score: 983
Period size: 343 Copynumber: 2.7 Consensus size: 345
11023404 GGGACTGGGT
* * * * *
11023414 CGATCCTCGACTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACACTCATTTCGTGAGT
1 CGATCCCCGACTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
* * ** * * * *
11023479 TGACTTAGGCATAC-GACGTTCATTCCCACT-T-TGAG-ATCAGACCGGACCAAGGGTTGCGACA
65 TGGCTTAGGCATACGGA-GTTCATT-CCA-TGTCTAAGCCCCAG-CCGGATCGAGGGTTGTGGCA
* * * * *
11023540 GCAGGATCGATAGCACGC-AGGGAGGACCGGGCCGATCCCCGTCTTGCACATTCTGCCTCTCCGA
126 GCGGGATCGACAGCACGCAAGGG-GGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGG
* * * * * *
11023604 TCGGCTGAGCGCCCGTAGCTCATTTCGTGGGTTGGCTTAGGCATAGTTCATTCCACGTCTAAACA
190 TCGGCTGAGCGCCCGCAGCTCGTTTCATGGGTTGACTTAGGCATAGTTCATCCCACATCTAAACA
* *
11023669 TACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTACGACAGCAGGACCAGCAGCA
255 TACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACTAAGGGTTACGACAGCAGGACCAG-AGCA
*
11023734 GGATCTACAGCATGTAGGAGGGATCGGGC
319 GGA-CTACAGCA-GTAGGAGGGATCAGGC
* * * * *
11023763 TGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGACAGAGTGCCCGTACGCTCATTTCGTGGGT
1 CGATCCCCGACTTGCGCATTCTGCCTCTCCG-TCGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
* *
11023828 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCAGGATTGAGGGTTGTGGCAGCGG
65 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGG
* *
11023893 GATCGACAGCACGCAAAGGGGGACC-AGCCAGATCCCCGGCTTGCACATTATGCCTCTCCGGCCG
130 GATCGACAGCACGC-AAGGGGGACCGGGCC-GATCCCCGGCTTGCACATTATGCCTCTCCGGTCG
* *
11023957 GTTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCC-CAATCTAA
193 GCTGAGCGCCCGCA-GCTCGTTTCATGGGTTGACTTAGGCAT----AGTTCATCCCAC-ATCTAA
* * ** * * **
11024021 GCATACAGAGTTCATTCCTAGTCTAAGATTGGA-CTGAACTAAGGGTTACGGCAGCAGGA-TTG-
252 ACATACAGAGTTCATTCCCAGTCTAAGATCAGATCAG-ACTAAGGGTTACGACAGCAGGACCAGA
11024083 GCA-G-C-AC-GC-G-AGG-GGGATCAGGC
316 GCAGGACTACAGCAGTAGGAGGGATCAGGC
* * *
11024106 CGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGT
1 CGATCCCCGACTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
* *
11024171 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCCGGATCGAGGGTTGTGGCAGCGG
65 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGG
* * * * *
11024236 GACCGACAGCACGCAGGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGTCGG
130 GATCGACAGCACGCA-AGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGTCGG
* * * *
11024301 CTCAACACCCGCATGCTTGTTTCATGGGTTGAC
194 CTGAGCGCCCGCA-GCTCGTTTCATGGGTTGAC
11024334 ATATGCATGC
Statistics
Matches: 481, Mismatches: 72, Indels: 42
0.81 0.12 0.07
Matches are distributed among these distances:
342 1 0.00
343 203 0.42
344 7 0.01
345 1 0.00
347 3 0.01
348 7 0.01
349 110 0.23
350 51 0.11
351 29 0.06
352 3 0.01
354 4 0.01
355 62 0.13
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.23
Consensus pattern (345 bp):
CGATCCCCGACTTGCGCATTCTGCCTCTCCGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGGG
ATCGACAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGTCGGCT
GAGCGCCCGCAGCTCGTTTCATGGGTTGACTTAGGCATAGTTCATCCCACATCTAAACATACAGA
GTTCATTCCCAGTCTAAGATCAGATCAGACTAAGGGTTACGACAGCAGGACCAGAGCAGGACTAC
AGCAGTAGGAGGGATCAGGC
Found at i:11024480 original size:157 final size:157
Alignment explanation
Indices: 11024084--11025469 Score: 601
Period size: 157 Copynumber: 8.8 Consensus size: 157
11024074 GCAGGATTGG
* * * *
11024084 CAGCACGC-GAGGGGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGCTGAGC
1 CAGCACGCAG-GGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCA-CCGGCTGAGC
* * * * * *
11024148 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATC
64 GCCCGCACGCCCGTTTCGTGGGTTGACATAGGCATAGAGAGTTCATTCCATGTCAAAGACCCAAC
** * * *
11024213 CGGATCGAGGGTTGTGGCAGCGGGACCGA
129 CGGATCGAGGGTTACGACAGCAGCACCGA
* * * *** * *
11024242 CAGCACGCAGGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAAC
1 CAGCACGCA-GGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTC-TCCACCGGCTGAGC
* * ** * * * * *
11024307 ACCCGCATGCTTGTTTCATGGGTTGACATATGCAT-GCAGAGTTTATTCTCA-GTCAAAGATCGA
64 GCCCGCACGCCCGTTTCGTGGGTTGACATAGGCATAG-AGAGTTCATTC-CATGTCAAAGACCCA
* *
11024370 ACCGGATCGAGGGTTACGACAGTAGCATCGA
127 ACCGGATCGAGGGTTACGACAGCAGCACCGA
* * *
11024401 CAGCACGTA-GGGGGTCCGGGTCAATCCCCGGCTTGCGCATTCTGCCTCTCCTACCGGCTGAGCG
1 CAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCC-ACCGGCTGAGCG
* * * * * * *
11024465 CCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCAATG-CTAAGCCCCAGA-
65 CCCGCACGCCCGTTTCGTGGGTTGACATAGGCATAGAGAGTTCATTCCATGTCAAAGACCCA-AC
* ** * * *
11024528 TGGATCGAGGGTTGTGGCAG-TGAAACCGA
129 CGGATCGAGGGTTACGACAGCAG-CACCGA
* * * * ** *
11024557 CAGCACACAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCCAGG-TCAG
1 CAGCACGCAG-GGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTC-TCCACC-GGCTGAG
** * * * * *
11024621 CGCCCGCACGCTTGTTTCGTGGGTTGACTTATGCATATG-GAGTTCATTTC-TAGTCTAAGA-TC
63 CGCCCGCACGCCCGTTTCGTGGGTTGACATAGGCATA-GAGAGTTCATTCCAT-GTCAAAGACCC
* * * * * *
11024683 AGATCGGA-CTGAGGCTTGC-AGTAGCAGGATCGA
126 A-ACCGGATC-GAGGGTTACGA-CAGCAGCACCGA
* * * * * * * * *
11024716 TAGCACGCA-GGGGGATCGAGCCGATCCCCGACTTGCGCATTCTACCTTTCCGGCTGGCTGAGCG
1 CAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCC-ACCGGCTGAGCG
* * * * * * * **
11024780 CCCGTACGCCCATTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCTAGT
65 CCCGCACGCCCGTTTCGTGGGTTGACATAGGCATAGAGAGTTCATTCCATGTCAAAGACCC-AAC
** * * * * *
11024844 CGGATCGAGGGTTGTGGCAGCGGGATCGG
129 CGGATCGAGGGTTACGACAGCAGCACCGA
** * * * * ** ** * *
11024873 CAGCACGCAGAGGGGGACCGGGCTGATCCCTGACTTGCACATTATGCCTCTTCGGCCAACTCAGT
1 CAGCACGCAG-GGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTC-TCCACCGGCTGAGC
* ** * * * * *
11024938 GCCTGCACGTTCGTTTTGTGGGTTG-CTTAGGCATACG-GAGTTCATTCCCA-GTCTAAGATCGA
64 GCCCGCACGCCCGTTTCGTGGGTTGACATAGGCATA-GAGAGTTCATT-CCATGTCAAAGACCCA
** * * * * * *
11025000 ACCAAACCGAGGGTTCCGATAGTAGGATCGA
127 ACCGGATCGAGGGTTACGACAGCAGCACCGA
* * ** * * ** *
11025031 CAGCATGCAGGGGGGACCGGACTGATCCTCGGCTTGCGCATTCTACCTCTTTAACCGACTGAGCG
1 CAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTC-TCCACCGGCTGAGCG
* * * * * **
11025096 CCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCTGGC
65 CCCGCACGCCCGTTTCGTGGGTTGACATAGGCATAGAGAGTTCATTCCATGTCAAAGACCC-AAC
* * ** * * *
11025160 CAGATCGATGGTTGTGGCAGCGAG-ACTGG
129 CGGATCGAGGGTTACGACAGC-AGCACCGA
** * * * *** * *
11025189 CAGCACGCAGAGGCAGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGT
1 CAGCACGCAG-GGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTC-TCCACCGGCTGAGC
* * ** * * * * *
11025254 GCCCGTACACTTGTTTCGTGGGTTGACTTATGCATATG-GAGTTCATTCC-TACTCTAAGA-TCA
64 GCCCGCACGCCCGTTTCGTGGGTTGACATAGGCATA-GAGAGTTCATTCCAT-GTCAAAGACCCA
* * * ** * *
11025316 GACCAGACCAAGGGTTGTGGCAGCAAG-ATCGA
127 -ACCGGATCGAGGGTTACGACAGC-AGCACCGA
* * * * * * ***
11025348 TAGCAAGCA-GGGGGATCGGGCCGATCCCCGGCTTGCGCAGTCTACCTCTTCGGTCGGCTGAGCG
1 CAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTC-TCCACCGGCTGAGCG
* * * * * *
11025412 CCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACG-GAGTTCATTCCGTGTCTAAGA
65 CCCGCACGCCCGTTTCGTGGGTTGACATAGGCATA-GAGAGTTCATTCCATGTCAAAGA
11025470 TTTTGAGGCA
Statistics
Matches: 940, Mismatches: 242, Indels: 93
0.74 0.19 0.07
Matches are distributed among these distances:
155 1 0.00
156 41 0.04
157 353 0.38
158 207 0.22
159 329 0.35
160 9 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
CAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCACCGGCTGAGCGC
CCGCACGCCCGTTTCGTGGGTTGACATAGGCATAGAGAGTTCATTCCATGTCAAAGACCCAACCG
GATCGAGGGTTACGACAGCAGCACCGA
Found at i:11024745 original size:315 final size:316
Alignment explanation
Indices: 11024021--11025468 Score: 1598
Period size: 316 Copynumber: 4.6 Consensus size: 316
11024011 CCCAATCTAA
* * * * ** * * * * *
11024021 GCATACAGAGTTCATTCCTAGTCTAAGATTGGA-CTGAACTAAGGGTTACGGCAGCAGGATTGGC
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGAACCAG-ACCGAGGGTTGCAGTAGCAGGATCGAC
* *
11024085 AGCACGCGAGGGGGATC-AGGCCGATCCCCGACTTGCGCATTCTGCCTCTCC-AGCCGGCTGAGC
65 AGCACGC-AGGGGGATCGA-GCCGATCCCCGGCTTGCGCATTCTACCTCTCCGA-CCGGCTGAGC
*
11024148 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATC
127 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* *
11024213 CGGATCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGGGGGGGACCGGGCCGATCCCTGGCTT
192 CGGATCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTT
* * * * * *
11024278 GCGCATTATGCCTCTTCGGTCGGCTCAACACCCGCATGCTTGTTTCATGGGTTGACATAT
257 GCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAT
* * * * * *
11024338 GCATGCAGAGTTTATT-CTCAGTCAAAGATCGAACCGGATCGAGGGTTACGACAGTAGC---ATC
1 GCATACGGAGTTCATTCCT-AGTCTAAGATCGAACCAGACCGAGGGTT--G-CAGTAGCAGGATC
* * * * * *
11024399 GACAGCACGTAGGGGG-TCCGGGTCAATCCCCGGCTTGCGCATTCTGCCTCTCCTACCGGCTGAG
62 GACAGCACGCAGGGGGAT-CGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAG
* *
11024463 CGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCAATG-CTAAGCCCCAG
126 CGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
** * * *
11024527 ATGGATCGAGGGTTGTGGCAGTGAAACCGACAGCACACAGAGGGGGACCGGGCCGAT-CCTCGGC
191 CCGGATCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCT-GGC
11024591 TTGCGCATTATGCCTCTTCGGCCAGG-TCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAT
255 TTGCGCATTATGCCTCTTCGGCC-GGCTCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAT
* * * * * * *
11024653 GCATATGGAGTTCATTTCTAGTCTAAGATC-AGATCGGACTGAGGCTTGCAGTAGCAGGATCGAT
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGA-ACCAGACCGAGGGTTGCAGTAGCAGGATCGAC
* * * *
11024717 AGCACGCAGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTACCTTTCCGGCTGGCTGAGCGCC
65 AGCACGCAGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCC
* * * * *
11024782 CGTACGCCCATTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGG
130 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* * * * * *
11024847 ATCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGACCGGGCTGATCCCTGACTTGCA
195 ATCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCG
** * * * *
11024912 CATTATGCCTCTTCGGCCAACTCAGTGCCTGCACG-TTCGTTTTGTGGGTTG-CTTAG
260 CATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTT-GTTTCGTGGGTTGACTTAT
* * * *
11024968 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAAACCGAGGGTT-CCGATAGTAGGATCGAC
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGAACCAGACCGAGGGTTGCAG-TAGCAGGATCGAC
* * * * *** *
11025032 AGCATGCAGGGGGGACCG-GACTGATCCTCGGCTTGCGCATTCTACCTCTTTAACCGACTGAGCG
65 AGCACGCA-GGGGGATCGAG-CCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCG
* **
11025096 CCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTGGCC
128 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * * ** * *
11025161 AGATCGATGGTTGTGGCAGCGAGACTGGCAGCACGCAGAGGCAGACCGGGTCGATCCCCGGCTTG
193 GGATCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTG
* * * *
11025226 CGCATTATGCCTCTTCGGTCGGCTCAGTGCCCGTACACTTGTTTCGTGGGTTGACTTAT
258 CGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAT
* * * ** * * *
11025285 GCATATGGAGTTCATTCCTACTCTAAGATC-AGACCAGACCAAGGGTTGTGGCAGCAAGATCGAT
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGA-ACCAGACCGAGGGTTGCAGTAGCAGGATCGAC
* * * * **
11025349 AGCAAGCAGGGGGATCGGGCCGATCCCCGGCTTGCGCAGTCTACCTCTTCGGTCGGCTGAGCGCC
65 AGCACGCAGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCC
* * * *
11025414 CACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCGTGTCTAAG
130 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
11025469 ATTTTGAGGC
Statistics
Matches: 949, Mismatches: 153, Indels: 59
0.82 0.13 0.05
Matches are distributed among these distances:
312 7 0.01
313 1 0.00
314 6 0.01
315 314 0.33
316 504 0.53
317 109 0.11
318 3 0.00
320 5 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (316 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCGAACCAGACCGAGGGTTGCAGTAGCAGGATCGACA
GCACGCAGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCC
GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
TCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGC
ATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAT
Found at i:11026174 original size:26 final size:26
Alignment explanation
Indices: 11026138--11026188 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
11026128 TGACTTCGGT
11026138 ATACGAAGTTCATCCCCAGTCTAAGC
1 ATACGAAGTTCATCCCCAGTCTAAGC
* * *
11026164 ATACGGAGTTCATTCTCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
11026189 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGC
Found at i:11026843 original size:26 final size:26
Alignment explanation
Indices: 11026814--11026869 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
11026804 GTGGTTGACT
* *
11026814 TAAGCATACGGAGTTTATCCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
*
11026840 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
11026866 TAAG
1 TAAG
11026870 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAGTC
Found at i:11028726 original size:26 final size:26
Alignment explanation
Indices: 11028674--11028726 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11028664 GTTGACTTAG
* *
11028674 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
* *
11028700 GCATACGGAGTTCATTCCTAATGTAA
1 GCATACGGAGTTCATCCCTAATCTAA
11028726 G
1 G
11028727 ATCAAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:11029223 original size:26 final size:26
Alignment explanation
Indices: 11029173--11029225 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11029163 GTTGGTTTAG
* *
11029173 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
11029199 GCATACAGAGTTCATTCTCA-ATCTAA
1 GCATACAGAGTTCATTC-CATATCTAA
11029225 G
1 G
11029226 ATCAAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:11029569 original size:26 final size:26
Alignment explanation
Indices: 11029540--11029592 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11029530 GTTGACTTAG
11029540 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
11029566 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11029592 G
1 G
11029593 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11030085 original size:158 final size:155
Alignment explanation
Indices: 11029630--11030087 Score: 413
Period size: 158 Copynumber: 2.9 Consensus size: 155
11029620 CAGGATAGGC
* * * **
11029630 AGCACGTAGGGGGGACCGGGCCGATCCCCGACTTATGCATTCTATCTCTCCGACTGGCTGAGCGC
1 AGCACGCAGGGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGAC-GGCTGAGCGC
* ** * *
11029695 CCGCACGCCGCTTCATAAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC-G
65 CCGCACGCCGTTTCATGGGTT-GCTTAGGCATACGGAATTCATTCCATGTCTAAGCCCCAGCCAG
* * *** *
11029759 AACCGAGGGTTGTGGCAGTGGGACCGGT
129 -ACCGAGGGTTGCGACAGCAAGACCGAT
* * * * * * * * *
11029787 AGCACGCAGAGGGGGATTGGGCCGATCCCCGGCTTGCGCATTATGCTTCTCCAACCGACTTAGTG
1 AGCACGCAG-GGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGA-CGGCTGAGCG
* * * ** *
11029852 CCCGCACGTTCATTTCATGGGTTGACTTAGGCATAC-CAAGTTCATTCCCA-GTCTAAG-ATCGG
64 CCCGCACG-CCGTTTCATGGGTTG-CTTAGGCATACGGAA-TTCATT-CCATGTCTAAGCCCCAG
* *
11029914 ATCAGACCGAGGGTTGCGACAGCAAGATCGAT
125 -CCAGACCGAGGGTTGCGACAGCAAGACCGAT
* *
11029946 AGCACGCAGGGGGGATCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGC
1 AGCACGCAGGGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCC-GACGGCTGAGCGC
* *
11030011 CCAG-ATGCCCGTTTCGTGGGTTAGCTTAGGCATACGGAATTCATTCCATGTCTAAGCCCCAGCC
65 CC-GCACG-CCGTTTCATGGGTT-GCTTAGGCATACGGAATTCATTCCATGTCTAAGCCCCAGCC
*
11030075 AGATCGAGGGTTG
127 AGACCGAGGGTTG
11030088 TGGTAGCAGG
Statistics
Matches: 232, Mismatches: 55, Indels: 27
0.74 0.18 0.09
Matches are distributed among these distances:
157 11 0.05
158 148 0.64
159 69 0.30
160 4 0.02
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (155 bp):
AGCACGCAGGGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACGGCTGAGCGCC
CGCACGCCGTTTCATGGGTTGCTTAGGCATACGGAATTCATTCCATGTCTAAGCCCCAGCCAGAC
CGAGGGTTGCGACAGCAAGACCGAT
Found at i:11030598 original size:26 final size:26
Alignment explanation
Indices: 11030562--11030612 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11030552 TGACTTAGGC
11030562 ATACGGAGTTCATT-CCATGTCTAAGG
1 ATACGGAGTTCATTCCCA-GTCTAAGG
*
11030588 ATACGGAGTTCGTTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
11030613 ATCGAGTTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGG
Found at i:11030966 original size:26 final size:26
Alignment explanation
Indices: 11030929--11030981 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11030919 GCTGACTTAG
*
11030929 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
11030955 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
11030981 G
1 G
11030982 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:11031434 original size:26 final size:26
Alignment explanation
Indices: 11031404--11031456 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11031394 GTTGGCTTAG
11031404 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
11031430 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11031456 G
1 G
11031457 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11031629 original size:26 final size:26
Alignment explanation
Indices: 11031599--11031651 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11031589 GTTGACTTAG
*
11031599 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
11031625 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
11031651 G
1 G
11031652 ATCGAACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:11031651 original size:195 final size:196
Alignment explanation
Indices: 11031296--11031654 Score: 551
Period size: 195 Copynumber: 1.8 Consensus size: 196
11031286 GAAGGTTGCG
* * *
11031296 ACAGCAGGATCGACAGCACATGGGGGGGATCGGGTCGGTCCCCAGCTTGCGCATTCTGCCACTCT
1 ACAGCAGGATCGACAGCACATGAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCACTCC
* * * *
11031361 GGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 GGCCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATGT
*
11031426 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTAGCAGCAGGACC
131 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTAGCAGCAGGACC
11031491 A
196 A
* * * *
11031492 ACAGCAGGATTGGCAGCACGT-AGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCC
1 ACAGCAGGATCGACAGCACATGAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCACTCC
* * *
11031556 GGTCGGCTGAACGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATATGAAGTTCATCCCCA-G
66 GGCCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCAT-CCCATG
*
11031620 TCTAAGCATACGTAGTTCATTCCCAGTCTAAGATC
130 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
11031655 GAACTAGACC
Statistics
Matches: 146, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
195 125 0.86
196 21 0.14
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (196 bp):
ACAGCAGGATCGACAGCACATGAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCACTCC
GGCCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTAGCAGCAGGACC
A
Found at i:11032703 original size:26 final size:26
Alignment explanation
Indices: 11032655--11032706 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11032645 TTGACTTAGC
* *
11032655 CATACGGAGTTCATCCCTGGTCTAAG
1 CATACGGAATTCATCCCTAGTCTAAG
11032681 CATACGGAATTCATTCCC-AGTCTAAG
1 CATACGGAATTCA-TCCCTAGTCTAAG
11032707 ATCAGATAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAATTCATCCCTAGTCTAAG
Found at i:11033007 original size:159 final size:158
Alignment explanation
Indices: 11032806--11033182 Score: 436
Period size: 158 Copynumber: 2.4 Consensus size: 158
11032796 ATCGGATGAG
* * * *
11032806 CGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG
1 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCC-AG
* * * * * *
11032871 -T-AGGACCGAGGGTTGTGGCAGCGGGACCGATAGCACGCAGAGGGGGATCGGGTCGATCCTCGG
65 ATCA-GACCGAGGGTTGCGGCAACAGGACCGACAGCAAGCA-AGGGGGATCGAGTCGATCCTCGG
* * *
11032934 CTTGCTCATTATGCCTCTCCGGTCGGTTCAA
128 CTTACGCATTATGCCTCTCCGGTCGGCTCAA
** * * ** *
11032965 CGCCCGCACGCTCGTTTCGTGGGTTAACTTCGGCATATGGAGTTCATTCCCA-ATCTAAGATCGG
1 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATT-CCATGTCTAAGCCCAG
* * *
11033029 ATCAGACCGAGGGTTGCGGCAACAGGATCGACAGCAAGTACGGGGGATCGAGTCGATCCTCGGCT
65 ATCAGACCGAGGGTTGCGGCAACAGGACCGACAGCAAGCAAGGGGGATCGAGTCGATCCTCGGCT
* * *
11033094 TACGCATTCTGCCTCTCCGGTCGGCTGAG
130 TACGCATTATGCCTCTCCGGTCGGCTCAA
* * *
11033123 CACCCGCAGGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAATTCATTCCATGTCTAAGC
1 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
11033183 ATACGGAGTT
Statistics
Matches: 180, Mismatches: 34, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
157 3 0.02
158 95 0.53
159 78 0.43
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCAGA
TCAGACCGAGGGTTGCGGCAACAGGACCGACAGCAAGCAAGGGGGATCGAGTCGATCCTCGGCTT
ACGCATTATGCCTCTCCGGTCGGCTCAA
Found at i:11033248 original size:12 final size:12
Alignment explanation
Indices: 11033231--11033272 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
11033221 GAGGGTTGCG
11033231 GCAGCAGGACCA
1 GCAGCAGGACCA
*
11033243 GCAGCAGGATC-
1 GCAGCAGGACCA
*
11033254 GACAACAGGACCA
1 G-CAGCAGGACCA
11033267 GCAGCA
1 GCAGCA
11033273 AGATCGGTAG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 1 0.04
12 22 0.92
13 1 0.04
ACGTcount: A:0.36, C:0.31, G:0.31, T:0.02
Consensus pattern (12 bp):
GCAGCAGGACCA
Found at i:11034850 original size:158 final size:157
Alignment explanation
Indices: 11034561--11034894 Score: 413
Period size: 158 Copynumber: 2.1 Consensus size: 157
11034551 AAGCATACAA
*** * *
11034561 AGTTCATTCCCAGTCTAAGATCAAACTGGATCGAGGGTTGCGACAGCAGGATATGCAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAAACCAAATCGAGGGTTACGACAGCAGGATATGCAGCACGCAC
* * * * ** * * * * *
11034626 GGGGGATTGGGTCGATCCCTGGCTTGTGCATTCTACCTCTCTGAGAGGCTGAGCGCTCGTATGCT
66 GGGGGATCGAGTCGATCCCCGACTTACGCATTCTACCTCTCTGACAGACTGAGCGCCCGCACGCT
*
11034691 TGTTTCGTGGGTTGACTTAGGCATACGG
131 TGTTTCGTGGGTTGACTTACGCATAC-G
*
11034719 AGTTCATTCCCAGTCTAAGATCAGACCAAA-CTGAGGGTTACGACAGCAGGAT-TGACAGCACGC
1 AGTTCATTCCCAGTCTAAGATCAAACCAAATC-GAGGGTTACGACAGCAGGATATG-CAGCACGC
* * *
11034782 ACGGGGGATCGAGTCGGTCCCCGACTTACGCATTCTACCTCTCTGACCGACTGAGCTCCCGCACG
64 ACGGGGGATCGAGTCGATCCCCGACTTACGCATTCTACCTCTCTGACAGACTGAGCGCCCGCACG
*
11034847 CTTGTTTCGTGGGTTGGCTTACGCATACG
129 CTTGTTTCGTGGGTTGACTTACGCATACG
11034876 AGTTCATT-CCATGTCTAAG
1 AGTTCATTCCCA-GTCTAAG
11034895 CATACAAAGT
Statistics
Matches: 151, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
156 3 0.02
157 19 0.13
158 129 0.85
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.25
Consensus pattern (157 bp):
AGTTCATTCCCAGTCTAAGATCAAACCAAATCGAGGGTTACGACAGCAGGATATGCAGCACGCAC
GGGGGATCGAGTCGATCCCCGACTTACGCATTCTACCTCTCTGACAGACTGAGCGCCCGCACGCT
TGTTTCGTGGGTTGACTTACGCATACG
Found at i:11035100 original size:26 final size:26
Alignment explanation
Indices: 11035071--11035123 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11035061 GTTGACCTAG
*
11035071 GCATACGGAG-TTCATCCCTAGTCTAA
1 GCATACAGAGTTTCATCCC-AGTCTAA
*
11035097 GCATACAGAGTTTCTTCCCAGTCTAA
1 GCATACAGAGTTTCATCCCAGTCTAA
11035123 G
1 G
11035124 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTTCATCCCAGTCTAA
Found at i:11035456 original size:26 final size:26
Alignment explanation
Indices: 11035426--11035478 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11035416 GTTGACTTAG
11035426 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
11035452 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11035478 G
1 G
11035479 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11035963 original size:26 final size:26
Alignment explanation
Indices: 11035927--11035979 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11035917 GTTGGCTTAG
*
11035927 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11035953 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11035979 G
1 G
11035980 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11036092 original size:184 final size:184
Alignment explanation
Indices: 11035769--11036138 Score: 492
Period size: 184 Copynumber: 2.0 Consensus size: 184
11035759 GTTGACTTAG
* * * * *
11035769 GCATACGAAGTTCATTCCCAATATAAGATCGGATCGGACCGAGGGTTGCGATAGCAGGATCAACA
1 GCATACGAAGTTCATTCCCAATATAAGATCGGACCGAACCAAGGGTTGCAACAGCAGGATCAACA
* * *
11035834 GCACGTAGGGGGGATCAGGCCGATCCCCGGCTTGCGTATTCTGCCTCTCCTGCCGACTGAGTGCA
66 GCACGCAGGAGGGATCAGGCCGATCCCCGGCTTGCATATTCTGCCTCTCCTGCCGACTGAGTGCA
* *
11035899 CGTACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAA
* * * * ***
11035953 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTGCAACAGTAGGATTGGCA
1 GCATACGAAGTTCATTCCCAATATAAGATCGGACCGAACCAAGGGTTGCAACAGCAGGATCAACA
* * * * *
11036018 GCATGCAGTGAGGGATCGGGCTGATCCCCGGCTTGCATATTCTGCCTCTCC-GACCG-GTGAGTT
66 GCACGCAG-GAGGGATCAGGCCGATCCCCGGCTTGCATATTCTGCCTCTCCTG-CCGACTGAGTG
* *
11036081 CCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAA
129 CACGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAA
11036137 GC
1 GC
11036139 CCCAGTCGGA
Statistics
Matches: 160, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
184 119 0.74
185 41 0.26
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (184 bp):
GCATACGAAGTTCATTCCCAATATAAGATCGGACCGAACCAAGGGTTGCAACAGCAGGATCAACA
GCACGCAGGAGGGATCAGGCCGATCCCCGGCTTGCATATTCTGCCTCTCCTGCCGACTGAGTGCA
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAA
Found at i:11036326 original size:26 final size:26
Alignment explanation
Indices: 11036297--11036347 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11036287 TGACTTAGGC
11036297 ATACGGAGTTCATCCCCAGTCTAAGG
1 ATACGGAGTTCATCCCCAGTCTAAGG
* *
11036323 ATACGGAGTTCATTCTCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
11036348 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGG
Found at i:11036856 original size:26 final size:26
Alignment explanation
Indices: 11036820--11036872 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11036810 GTTGACTTAG
11036820 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
11036846 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11036872 G
1 G
11036873 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11037068 original size:26 final size:26
Alignment explanation
Indices: 11037016--11037068 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11037006 GTTGGCTTAG
*
11037016 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
11037042 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
11037068 G
1 G
11037069 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:11040824 original size:26 final size:26
Alignment explanation
Indices: 11040788--11040840 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11040778 GTTGGCTTAG
*
11040788 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTCCATTCCCA-GTCTAA
11040814 GCATATGGAGTCCATTCCCAGTCTAA
1 GCATATGGAGTCCATTCCCAGTCTAA
11040840 G
1 G
11040841 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTCCATTCCCAGTCTAA
Found at i:11041547 original size:26 final size:26
Alignment explanation
Indices: 11041511--11041563 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11041501 GTTGACTTAG
11041511 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
11041537 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11041563 G
1 G
11041564 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11041843 original size:158 final size:159
Alignment explanation
Indices: 11041537--11042039 Score: 409
Period size: 158 Copynumber: 3.2 Consensus size: 159
11041527 CCCAGTCTAA
* ** * * *
11041537 GCATATGGAGTTCATTCCCA-GTCTAAG-ATC-GAACC-GAATGAAGGTTGTGGCAGCAAGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGCATCAG-ACCAGACCGAGGGTTGCGGCAGCAGGATCG
** ** * * * * * *
11041598 GTAGCACGCAGTGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC
64 AAAGCACAAAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGC
* * * *
11041663 ACCTGCAC-ATCCGTTTCATGGGTTGGCTTAG
129 GCCCGCACGCT-CGTTTCGTGGGTTGGCTTAG
* * * ** * *
11041694 GCATAGGGAGTTCATTCCATGTGTAAGCCGT-AG-CTGGACCGAGGGTTGTGGCAG-GGGA-CTG
1 GCATACGGAGTTCATTCCATGTCTAAG-CATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC-G
** * * * * * *
11041755 GCAGCACAAAGAGGTGGACCGGGTCGATGCTCGGCTTGTGCATTATGCCTCTTCGACCGGCTCAG
64 AAAGCACAAAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAG
* * *
11041820 CGCCCGTACGCTCGTCTT-GTGGGTTGACTTAT
128 CGCCCGCACGCTCGT-TTCGTGGGTTGGCTTAG
** * * *
11041852 GCATACAAATTTCATTTCCA-GTCTAAG-ATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGA
1 GCATACGGAGTTCA-TTCCATGTCTAAGCATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * *
11041915 AAGCACACAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
65 AAGCACAAAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCG
11041980 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
11042010 GCATATGGAGTTCATTCCATGTCTAAGCAT
1 GCATACGGAGTTCATTCCATGTCTAAGCAT
11042040 ATGGGGTTCA
Statistics
Matches: 268, Mismatches: 61, Indels: 32
0.74 0.17 0.09
Matches are distributed among these distances:
156 5 0.02
157 42 0.16
158 196 0.73
159 24 0.09
160 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGAA
AGCACAAAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:11042048 original size:26 final size:26
Alignment explanation
Indices: 11042010--11042062 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11042000 GTTGGCTTAG
11042010 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
*
11042036 GCATATGGGGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
11042062 G
1 G
11042063 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:11043415 original size:26 final size:26
Alignment explanation
Indices: 11043379--11043431 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11043369 GTTGACTTAG
* *
11043379 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
11043405 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
11043431 G
1 G
11043432 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:11043884 original size:158 final size:156
Alignment explanation
Indices: 11043405--11043906 Score: 453
Period size: 158 Copynumber: 3.2 Consensus size: 156
11043395 CCCAGTCTAA
* * * * *
11043405 GCATACGGAGTTCATTCCCA-ATCTAAGATCGGATCAGACCGAGGGTTACGACAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATTGAC
* ** * * * * *
11043469 AGCACGCAT-GAGGGATCGGGTCGAT-CTTTGACTTGCGTATTCTGCATCTCTGGCCGGTTGAGC
65 AGCACG-GTGGAGGGATCGGGTCGATCCTCAG-CTTACGCATTCTGCCTCTCCGG-CGGCTGAGC
* * *
11043532 GGCCGCACGC-C-TATTCCGTGGGTTGGCTTAG
127 -ACCGCACACTCGT-TT-TGTGGGTTGGCTTAG
* ** * * * * *
11043563 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGTAGGACTGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCAGACCGAGGGTTGCGGCAGCAGGATTGAC
* * * * * * * * *
11043627 AGCAC-GTAGAGAGGGATCGAGTGGATCTTCGGCTTACGCATTATGCCTCTTCGGCTGACTCAAC
65 AGCACGGT-G-GAGGGATCGGGTCGATCCTCAGCTTACGCATTCTGCCTCTCCGGC-GGCTGAGC
* *
11043691 ACCCGCACACTCGTTTTGTGGGTTGACTTAT
127 A-CCGCACACTCGTTTTGTGGGTTGGCTTAG
*
11043722 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATTGAC
* *
11043786 AGCACGGTGGGGGGATTGGGTCGATCCTCAGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCAC
65 AGCACGGTGGAGGGATCGGGTCGATCCTCAGCTTACGCATTCTGCCTCTCCGG-CGGCTGAGCAC
*
11043851 CTGCACACTCGTTTTATGGGTTGGCTTAG
129 C-GCACACTCGTTTTGTGGGTTGGCTTAG
*
11043880 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
11043907 CATATGGAGT
Statistics
Matches: 270, Mismatches: 58, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
156 1 0.00
157 8 0.03
158 141 0.52
159 109 0.40
160 10 0.04
161 1 0.00
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATTGACA
GCACGGTGGAGGGATCGGGTCGATCCTCAGCTTACGCATTCTGCCTCTCCGGCGGCTGAGCACCG
CACACTCGTTTTGTGGGTTGGCTTAG
Found at i:11043930 original size:26 final size:26
Alignment explanation
Indices: 11043880--11043932 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11043870 GTTGGCTTAG
*
11043880 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATGGAGTTCATTCCATATCTAA
11043906 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATATGGAGTTCATT-CCATATCTAA
11043932 G
1 G
11043933 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCATATCTAA
Found at i:11044232 original size:13 final size:13
Alignment explanation
Indices: 11044214--11044240 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
11044204 TACGCATTAT
11044214 GCCTCTCCGATCG
1 GCCTCTCCGATCG
11044227 GCCTCTCCGATCG
1 GCCTCTCCGATCG
11044240 G
1 G
11044241 TTGAGTGCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.44, G:0.26, T:0.22
Consensus pattern (13 bp):
GCCTCTCCGATCG
Found at i:11044315 original size:26 final size:26
Alignment explanation
Indices: 11044278--11044330 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11044268 GTTGACTTAG
11044278 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
11044304 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
11044330 G
1 G
11044331 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:11050670 original size:26 final size:26
Alignment explanation
Indices: 11050640--11050692 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11050630 GTTGAATTAG
* *
11050640 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAATCTAA
*
11050666 GCATATGAAGTTCATTCCCAATCTAA
1 GCATATGAAGTTCATCCCCAATCTAA
11050692 G
1 G
11050693 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAATCTAA
Found at i:11051176 original size:26 final size:26
Alignment explanation
Indices: 11051140--11051190 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11051130 TTAGCTTAGG
11051140 CATACGGAGTTCATT-CCATGTCTAAA
1 CATACGGAGTTCATTCCCA-GTCTAAA
11051166 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
11051191 GAGTTTGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:11052588 original size:26 final size:26
Alignment explanation
Indices: 11052558--11052610 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11052548 GTTGACTTAC
*
11052558 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
11052584 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11052610 G
1 G
11052611 ATCAGACGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11053034 original size:159 final size:157
Alignment explanation
Indices: 11052647--11053080 Score: 383
Period size: 159 Copynumber: 2.7 Consensus size: 157
11052637 CAGGATCGGT
* * * * * *
11052647 AGCATGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGC
1 AGCACGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCAGATCGGCTAAGCGC
* * * * *
11052712 CCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTC-ATGTCTAAACCCCAGCC
66 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-CGAGTTCATTCCTA-GTCTAAACCCCAACC
**
11052776 GAACCGAGGGTTGTGGCAGCGGGACTGAC
129 GAACCGAGGGTTGTGGCAGCAAGACTGAC
* * * * * * * * * *
11052805 AGCACGCAGAAGAGGATCGGGTTGTTCCCTGGCTTGCGCATTATGCCTCTTCAGCTAGG-TCAGC
1 AGCACGCAG-GGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTC-TCAGATCGGCTAAGC
* * * * * * *
11052869 GTCCGCACGCTCGTTTCGTGAGTTGACTTATGCATATGAAGTTCATTCCTAGTCTAAGA-TCGAA
64 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG-AGTTCATTCCTAGTCTAA-ACCCCAA
11052933 CC-AGACCGAGGGTTGTGGCAGCAAGA-TCGAC
127 CCGA-ACCGAGGGTTGTGGCAGCAAGACT-GAC
* * * * * *
11052964 AGCACGCAGGTGGGGACCGGGCCAATCCCCGACTTGTGCATTTTGCCTCTCTGGTCGGCTAAGCG
1 AGCACGCAGG-GGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCAGATCGGCTAAGCG
* * * * *
11053029 CCCGCACGTTCATTTCATGGGTTGGCTTAGGCTTACGAGTTCATCCCTAGTC
65 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCTAGTC
11053081 GAAGCATACA
Statistics
Matches: 214, Mismatches: 53, Indels: 18
0.75 0.19 0.06
Matches are distributed among these distances:
158 31 0.14
159 177 0.83
160 6 0.03
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.24
Consensus pattern (157 bp):
AGCACGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCAGATCGGCTAAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCTAGTCTAAACCCCAACCGA
ACCGAGGGTTGTGGCAGCAAGACTGAC
Found at i:11053472 original size:26 final size:26
Alignment explanation
Indices: 11053425--11053476 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11053415 TTGACATTGT
* *
11053425 CATACGGAGTTCATCCGTAGTCTAAG
1 CATACAGAGTTCATCCGCAGTCTAAG
11053451 CATACAGAGTTCATTCC-CAGTCTAAG
1 CATACAGAGTTCA-TCCGCAGTCTAAG
11053477 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATCCGCAGTCTAAG
Found at i:11053808 original size:159 final size:157
Alignment explanation
Indices: 11053596--11053881 Score: 331
Period size: 159 Copynumber: 1.8 Consensus size: 157
11053586 TCCGTTTCAA
* * * * * * *
11053596 GGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCCGGATCGATGGTTGTGGCA
1 GGGTTGACTTAGGCATACGAAGTTCATTCCAAGTCTAAGCCCCAGCCGAATCGAGGGTTATAGCA
* * * *
11053661 GCGGGATCGACAGCACGCAGAGGGGGACCGAGCTGATCCTTGGCTTGCGCATTATGCCTCTTCGG
66 GCAGGATCAACAGCACGCAG-GAGGGACCGAGCTGAT-CTCGGCTTGCGCATTATGCCTCTTCGG
11053726 TCATCTCAGCGCCCGAACACTCATTTCGT
129 TCATCTCAGCGCCCGAACACTCATTTCGT
* ** * *
11053755 GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG-ATCGGATCGAATCGAGGGTTATAGC
1 GGGTTGACTTAGGCATACGAAGTTCATTCCAAGTCTAAGCCCCAG-CCGAATCGAGGGTTATAGC
* * * * * * *
11053819 AGCAGGATCAATAGCATGTAGGAGGGATCGGGTTGATCTCGGCTTGCGCATTCTGCCTCTTCG
65 AGCAGGATCAACAGCACGCAGGAGGGACCGAGCTGATCTCGGCTTGCGCATTATGCCTCTTCG
11053882 ATCGGTTGAG
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
157 24 0.23
158 14 0.14
159 65 0.63
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.25
Consensus pattern (157 bp):
GGGTTGACTTAGGCATACGAAGTTCATTCCAAGTCTAAGCCCCAGCCGAATCGAGGGTTATAGCA
GCAGGATCAACAGCACGCAGGAGGGACCGAGCTGATCTCGGCTTGCGCATTATGCCTCTTCGGTC
ATCTCAGCGCCCGAACACTCATTTCGT
Found at i:11054270 original size:696 final size:697
Alignment explanation
Indices: 11053386--11054845 Score: 1783
Period size: 696 Copynumber: 2.1 Consensus size: 697
11053376 TCTCCAACCG
* * * **
11053386 ATTGAGCGCCCGCACGCTCATTTCGGGGGTTGACATTGTCATACGGAGTTCATCCGTAGTCTAAG
1 ATTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-TTGGCATACGGAGTTCATCCCCAGTCTAAG
* * *
11053451 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAG
65 CATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAAGGTTACAGCAGCAGGATCGACAG
* * ** * *
11053516 CATGCAGGGGGGATCGGGCCAATCCCCGCCTTGTGCATTCTGCCTCTCCAGTCGACTGAGCGCCT
130 CACGCAGGGGGGATCGGGCCAATCCCAGCCTTACGCATTCTGCCTCTCCAGCCGACTGAGCGCCC
* *
11053581 GCACGTCCGTTTCAAGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCCGGA
195 GCACGCCCGTTTCAAGGGTTGGCTTAGGCATAGAGAGTTCATTCCAAGTCTAAGCCCCAGCCGGA
* * * * ** ***
11053646 TCGATGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGAGCTGATCCTTGGCTTGCGC
260 CCGAGGGTTGTGGCAGCGGGACCGACAACACGCAGAGGGGGACCGAGCCAATCCCCAGCTTGCGC
** * *
11053711 ATTATGCCTCTTCGGTC-ATCTCAGCGCCCGAACACTCATTTCGTGGGTTGACTTAGGCATACGA
325 ATTATGCAGCTTCAGTCGA-CTCAGCACCCGAACACTCATTTCGTGGGTTGACTTAGGCATACGA
* * * *
11053775 AGTTCATTCCCAGTCTAAGATCGGATCGAA-TCGAGGGTTATAGCAGCAGGATCAA-TAGCATGT
389 AGTTCATTCCCAATCTAAGATCGGATCGAACT-GAGGGTTACAGCAGCAAGATCAACT-GCACGT
* * ** * * * **
11053838 AGGA-GGGATCGGGTTGA-T-CTCGGCTTGCGCATTCTGCCTCTTCGATCGGTTGAGTGCCCGCA
452 AGGAGGGGACCGAG-CCATTCCTCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAACGCCCGCA
* * * * *
11053900 TGCTCGTTTTGTGGGAAGGCTTAGGCATACAGATTTCATTTCATGTCTAAGCATACGGAGTTCAT
516 CGCTCGTTTCGTGGGAAGGCTTAAGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
* * * ** **
11053965 TCCTAGTGTAAGATCGGACCGGACCGAGGCTTGCGGTAGCAGGACCAGCAATAGGATCGGTAACA
581 TCCCAGTCTAAGATCAGACCGGACCGAGGCTTGCGACAGCAGGACCAGCAATAGGATCGACAACA
*** *
11054030 TGTAGGGGGGACC-AGGCCGATCCTCGGCTTACGCATTCTGCCTCTCTGGCTA
646 CACAGGGGGGACCGA-GCCGATCCTCGGCTTACGCATTCTACCTCTCTGGCTA
* * *
11054082 ATTGAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAG
1 ATTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT-GGCATACGGAGTTCATCCCCAGTCTAAG
* * * * *
11054147 CATAC-GAAGTTCATTCCCAGTCTAAGATCAAACTGGATCGAAGGTTACGGCAGTAGGATCGATA
65 CATACAG-AGTTCATTCCCAGTCTAAGATCAAACCGGACCGAAGGTTACAGCAGCAGGATCGACA
*
11054211 GCACGCAGGGGGGATCGGGCCGATCCTCAG-CTTACGCATT-TCGCCTCTCC-GACCGACTGAGC
129 GCACGCAGGGGGGATCGGGCCAATCC-CAGCCTTACGCATTCT-GCCTCTCCAG-CCGACTGAGC
** * *
11054273 GCCCGCACGCCCGTTTCGTGTGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGC
191 GCCCGCACGCCCGTTTCAAGGGTTGGCTTAGGCATAGAGAGTTCATTCCAAGTCTAAGCCCCAGC
* * * *
11054338 TGGACCGAGGGTTGTGGCAGCGGGACCGACAACATGTAGAGGGGGACCGGGCCAATCCCCAGCTT
256 CGGACCGAGGGTTGTGGCAGCGGGACCGACAACACGCAGAGGGGGACCGAGCCAATCCCCAGCTT
* * * * * *
11054403 GGGCATTATGCAGCTTTAGTCGACTCAGCACCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATA
321 GCGCATTATGCAGCTTCAGTCGACTCAGCACCCGAACACTCATTTCGTGGGTTGACTTAGGCATA
* * * *
11054468 CGGAGTTCATTCCCAATCTAAGATCGGATCGGACTGAGGGTTACGGTAGCAAGATCAACTGCACG
386 CGAAGTTCATTCCCAATCTAAGATCGGATCGAACTGAGGGTTACAGCAGCAAGATCAACTGCACG
* *
11054533 TAGGAGGGGACCGAGCCATTCCTCGGCTTACGCATTCTGGCTCTCCGATCGGCTGAACGCTCGCA
451 TAGGAGGGGACCGAGCCATTCCTCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAACGCCCGCA
** *
11054598 CGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
516 CGCTCGTTTCGTGGGAAGGCTTAAGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
* * * * * *
11054663 TCCCAGTCTAAGATCAGACCGGACGGAGGGTTGCGACCGTAGGACCAGCAGTAGGATCGACAGCA
581 TCCCAGTCTAAGATCAGACCGGACCGAGGCTTGCGACAGCAGGACCAGCAATAGGATCGACAACA
* * *
11054728 CACAGGGGGGATCGAGCCGATCCTCGGCTTGCGCATTCTACCTCTCTGGCTG
646 CACAGGGGGGACCGAGCCGATCCTCGGCTTACGCATTCTACCTCTCTGGCTA
** * * *
11054780 GCTGAGCGCCCGCACGCTCGTTTCCTGGGTTGGCTTTGGCATACGGAGTTCAT-TCCATGTCTAA
1 ATTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-TTGGCATACGGAGTTCATCCCCA-GTCTAA
11054844 GC
64 GC
11054846 CCCAGTCGGA
Statistics
Matches: 643, Mismatches: 107, Indels: 26
0.83 0.14 0.03
Matches are distributed among these distances:
695 5 0.01
696 379 0.59
697 16 0.02
698 240 0.37
699 3 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (697 bp):
ATTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTGGCATACGGAGTTCATCCCCAGTCTAAGC
ATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAAGGTTACAGCAGCAGGATCGACAGC
ACGCAGGGGGGATCGGGCCAATCCCAGCCTTACGCATTCTGCCTCTCCAGCCGACTGAGCGCCCG
CACGCCCGTTTCAAGGGTTGGCTTAGGCATAGAGAGTTCATTCCAAGTCTAAGCCCCAGCCGGAC
CGAGGGTTGTGGCAGCGGGACCGACAACACGCAGAGGGGGACCGAGCCAATCCCCAGCTTGCGCA
TTATGCAGCTTCAGTCGACTCAGCACCCGAACACTCATTTCGTGGGTTGACTTAGGCATACGAAG
TTCATTCCCAATCTAAGATCGGATCGAACTGAGGGTTACAGCAGCAAGATCAACTGCACGTAGGA
GGGGACCGAGCCATTCCTCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAACGCCCGCACGCTC
GTTTCGTGGGAAGGCTTAAGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCAGACCGGACCGAGGCTTGCGACAGCAGGACCAGCAATAGGATCGACAACACACAG
GGGGGACCGAGCCGATCCTCGGCTTACGCATTCTACCTCTCTGGCTA
Found at i:11054655 original size:26 final size:26
Alignment explanation
Indices: 11054619--11054674 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
11054609 TGGGTTGGCT
11054619 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
11054645 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
11054671 TAAG
1 TAAG
11054675 ATCAGACCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:11056327 original size:26 final size:26
Alignment explanation
Indices: 11056298--11056350 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11056288 GTTGACTTAG
11056298 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
* *
11056324 GCATATAGAGTTCATTCCCAGTGTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
11056350 G
1 G
11056351 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCCAGTCTAA
Found at i:11056566 original size:184 final size:184
Alignment explanation
Indices: 11056225--11056566 Score: 429
Period size: 184 Copynumber: 1.9 Consensus size: 184
11056215 ACCACCTGTT
* * * *
11056225 CGATCCCCGGCATGCGCATCCTGCCTCTCTAGTCGGCTGAGCGCCCGCACGCTCGTTCCGTGGGT
1 CGATCCCCGGCATGCGCATCCTGCCTCTCCAGTCGGCTGAGCGCCCACACGCTCATTCCATGGGT
* * * *
11056290 TGACTTAGGCATATAGAGTTCATCCCCAGTCTAAGCATATAGAGTTCATTCCCAGTGTAAGATCA
66 TGACTTAGGCATACAGAGTTCATCCCAAGTCTAAGCATAGAGAGTTCATTCCCAGTCTAAGATCA
** * * *
11056355 GACTGGACTGAGGGTTACGATAGCAGGATCGGCAGCACGCAGGGGGGATCGAAC
131 GACCAGACCGAGGATTACGACAGCAGGATCGGCAGCACGCAGGGGGGATCGAAC
* * * * *
11056409 CGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCACACGCTCATTTCATGGGT
1 CGATCCCCGGCATGCGCATCCTGCCTCTCCAGTCGGCTGAGCGCCCACACGCTCATTCCATGGGT
* * *
11056474 TGGCTTAGGCATACGGAGTTCAT-TCAATGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGAT
66 TGACTTAGGCATACAGAGTTCATCCCAA-GTCTAAGCATA-GAGAGTTCATTCCCAGTCTAAGAT
* *
11056537 C-GAACCAGACCGAGGATTATGGCAGCAGGA
129 CAG-ACCAGACCGAGGATTACGACAGCAGGA
11056567 CCAGCAGTAA
Statistics
Matches: 132, Mismatches: 23, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
183 3 0.02
184 128 0.97
185 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (184 bp):
CGATCCCCGGCATGCGCATCCTGCCTCTCCAGTCGGCTGAGCGCCCACACGCTCATTCCATGGGT
TGACTTAGGCATACAGAGTTCATCCCAAGTCTAAGCATAGAGAGTTCATTCCCAGTCTAAGATCA
GACCAGACCGAGGATTACGACAGCAGGATCGGCAGCACGCAGGGGGGATCGAAC
Found at i:11057267 original size:355 final size:348
Alignment explanation
Indices: 11056387--11058154 Score: 1320
Period size: 355 Copynumber: 4.9 Consensus size: 348
11056377 GCAGGATCGG
* * * * * * ** * *
11056387 CAGCACGCAG-GGGGGATCGAACCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGC
1 CAGCACGCAGAGGGGGACCGAGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGACTGAAC
* * * * *
11056451 GCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCAATGTCTAAGCATACG
66 GCCCACACGCTCGTTTCATGGGTTGAC-TAGGCATACCGAGTTCATCCCCA-GTCTAAGCATACG
* * * *
11056515 AAGTTCATTCCCAGTCTAAGATC-GAACCAGACCGAGGATTATGGCAGCAGGACCAGCAGTAAGA
129 GAGTTCATTCCCAGTCTAAGATCAG-ATCGGACCGAGG-GT-T----G-A-G--CAGCAG---GA
** * * * * * * ** ** *
11056579 TCGGTAGCACGTAAGGGGTGACC-GAGCCAATCCCCGGCTTGTGCATTCTGCCCCTCCCACTAGT
180 TCGACAGCACG-CAGGGGGGACCAG-GTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGC
** * * * * * *
11056643 TGAGTGCCTGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCTTTTCATGTCTAAG--
243 TGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCC
* * * *
11056706 ----CCGGACCGAGGGTTGTGGCAACAGAATTGGTAGCGGGATTGC
308 CCAACCGGACCGAGGGTTGTGGCAGCAGGA-TCG-AGC-GGA-T-A
* * * * *
11056748 CAGCACGCAGAGGGCGATCG-GTTTGATCCCCGGCTTGCACATTATGCCTCTCCGATCGGCCTCT
1 CAGCACGCAGAGGGGGACCGAG-CTGATCCCTGGCTTGCGCATTATGCCTCTCCGA-------C-
** *
11056812 TCGGTCAACTGAGTGCCCACATGCTCGTTTCATGGGTTGACCTAGGCATA-CGAAGTTCATCCCC
57 -C-G---ACTGAACGCCCACACGCTCGTTTCATGGGTTGA-CTAGGCATACCG-AGTTCATCCCC
* * * * * * * *
11056876 ACTCTAAGCATATGGAGTTCATTCCCAATATAAGATCGGATCGAATCGAGGGTTGTAGCAGTAGG
115 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTG-AGCAGCAGG
** * * * * *
11056941 ATCGACAGCAAACAGGGGGGACCAGGCCAATCCCCGACTTGCGCATTCTGCCCCTCCGGCTGGCT
179 ATCGACAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCT
* ** * *
11057006 GAGCGCCCGCGTGCTCATTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCCC
244 GAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCC
* * *
11057071 CAGCCGGACTGAGGGTTGTGGCAGCAGGACCAGAAGCGGGATTGA
309 CAACCGGACCGAGGGTTGTGGCAGCAGGATC-G-AGC-GGA-T-A
* * * * *
11057116 CAGCACACAGAGGGGGACCGAGCTGATCCCTAGCTTGCGCATTATGCCTCCCCGACCGACTGGAT
1 CAGCACGCAGAGGGGGACCGAGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGACTGAAC
* * *
11057181 GCCCACACCCTCGTTTCATGGGTTGACATAGGCACACCGAGTTCATCCCCAGTCTAAGCATATGG
66 GCCCACACGCTCGTTTCATGGGTTGAC-TAGGCATACCGAGTTCATCCCCAGTCTAAGCATACGG
* * * * * *
11057246 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGATGGTTGCGGTAGCAGGATCGACAGGACGGAG
130 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTG-AGCAGCAGGATCGACAGCACGCAG
* * * * *
11057311 GGGCGACC-GAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGTACAC
194 GGGGGACCAG-GTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGC
** * *
11057375 CCATTTCGTGGGTT-GCTTAGGCATAGGGAGTTCATTCCATGTCTTAGCCCCAGCCGGACCGAGG
258 CCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGG
11057439 GTTGTGGCAGCAGGATCG-GC----A
323 GTTGTGGCAGCAGGATCGAGCGGATA
* * * * * * * * *
11057460 -A-CACGCAGAGGGGGATCGGGCCGATCCCTGGCTTACACATTTTGCCTCTTCTACCGGCT-AAG
1 CAGCACGCAGAGGGGGACCGAGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGACTGAA-
* * * * *
11057522 CGCCCGCACGCTCGTTTCATGCGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATAC
65 CGCCCACACGCTCGTTTCATGGGTTGAC-TAGGCATACCGAGTTCATCCCCA-GTCTAAGCATAC
*
11057586 GGAGTTCATTCCCAGTCAAAGATCAGATCGGACCGAGGGCTATGGCAGCAGGACCGGCAGTAGGA
128 GGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGG-T-T-G-AGC---A---GC---AGGA
* * * * * * **
11057651 TCGACAGCACGTA-GGGGGA-CTGGATCGATCCACGGCTAGCGCATTCTACCTCTCCGACCGTTT
180 TCGACAGCACGCAGGGGGGACCAGG-TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCT
* * * * **
11057714 GAGCACCTGCACGCTCGTTTCATGGGTTGGCAAAGGCATACAGAGTTCATTCCATGTCTAAGCCC
244 GAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCC
* * * *
11057779 AAACCAGATCGAGGGTTGTGGAAGCAGGATCGGTAGCGAGATCAA
309 CAACCGGACCGAGGGTTGTGGCAGCAGGATC-G-AGCG-GAT--A
* * * * *
11057824 CAGCACGCCGAGGGGGACC-AGGCTAATCCCCGGTTTGTGCATTATGCCTCTCCGACCGACTGAA
1 CAGCACGCAGAGGGGGACCGA-GCTGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGACTGAA
* * * * * *
11057888 CGCCCGCATGCTTGTTTCGTGGGTTGACTCAGGCATACGGAGTTCATCCCTAGTCTAAGCATACG
65 CGCCCACACGCTCGTTTCATGGGTTGACT-AGGCATACCGAGTTCATCCCCAGTCTAAGCATACG
** * *
11057953 GAGTTCATTCCCAGTCTAAGATCAGATCGGATAGAGGGTTGCGACAGCAAGATCGACAGCACGCA
129 GAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGAG-CAGCAGGATCGACAGCACGCA
* *
11058018 GGGGGGACCAAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGC
193 GGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGC
* ** **
11058083 CCATTTCGTGGGTTTGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATTGGACCGAGG
258 CCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGG
11058148 GTTGTGG
323 GTTGTGG
11058155 TAGTGGGACC
Statistics
Matches: 1131, Mismatches: 209, Indels: 140
0.76 0.14 0.09
Matches are distributed among these distances:
341 4 0.00
342 132 0.12
343 2 0.00
344 2 0.00
345 3 0.00
348 1 0.00
351 4 0.00
352 2 0.00
353 60 0.05
354 150 0.13
355 286 0.25
356 4 0.00
357 4 0.00
358 1 0.00
359 1 0.00
360 1 0.00
361 11 0.01
362 132 0.12
363 12 0.01
364 2 0.00
365 3 0.00
366 136 0.12
367 4 0.00
368 80 0.07
369 3 0.00
371 1 0.00
372 1 0.00
373 1 0.00
374 2 0.00
375 82 0.07
376 4 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (348 bp):
CAGCACGCAGAGGGGGACCGAGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGACCGACTGAAC
GCCCACACGCTCGTTTCATGGGTTGACTAGGCATACCGAGTTCATCCCCAGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGAGCAGCAGGATCGACAGCACGCAGGG
GGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCCCA
TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTT
GTGGCAGCAGGATCGAGCGGATA
Found at i:11057575 original size:159 final size:157
Alignment explanation
Indices: 11057271--11057577 Score: 366
Period size: 158 Copynumber: 1.9 Consensus size: 157
11057261 TAAGATCAGA
* * ** *
11057271 CCGGACCGATGGTTGCGGTAGCAGGATCGACAGGACGGAGGGGCGACCGAGTCGATCCCCGGCTT
1 CCGGACCGAGGGTTGCGGCAGCAGGATCGACAACACGGAGGGGCGACCGAGCCGATCCCCGGCTT
* * * * * * * *
11057336 GCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGTACACCCATTTCGTGGGTTGCTTAGGCATAG
66 ACACATTCTGCCTCTCTGACCGGCTAAGCGCCCGCACACCCATTTCATGCGTTGCTTAGGCATAC
11057401 GGAGTTCATTCCATGTCTTAGCCCCAG
131 GGAGTTCATTCCATGTCTTAGCCCCAG
* * * * *
11057428 CCGGACCGAGGGTTGTGGCAGCAGGATCGGCAACACGCAGAGGGG-GATCGGGCCGATCCCTGGC
1 CCGGACCGAGGGTTGCGGCAGCAGGATCGACAACACG--GAGGGGCGACCGAGCCGATCCCCGGC
* * * *
11057492 TTACACATTTTGCCTCTTCT-ACCGGCTAAGCGCCCGCACGCTCGTTTCATGCGTTGGCTTAGGC
64 TTACACATTCTGCCTC-TCTGACCGGCTAAGCGCCCGCACACCCATTTCATGCGTT-GCTTAGGC
11057556 ATACGGAGTTCATTCCATGTCT
127 ATACGGAGTTCATTCCATGTCT
11057578 AAGCATACGG
Statistics
Matches: 124, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
157 31 0.25
158 55 0.44
159 38 0.31
ACGTcount: A:0.17, C:0.30, G:0.31, T:0.22
Consensus pattern (157 bp):
CCGGACCGAGGGTTGCGGCAGCAGGATCGACAACACGGAGGGGCGACCGAGCCGATCCCCGGCTT
ACACATTCTGCCTCTCTGACCGGCTAAGCGCCCGCACACCCATTTCATGCGTTGCTTAGGCATAC
GGAGTTCATTCCATGTCTTAGCCCCAG
Done.