Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 65 of 402
Found at i:11057949 original size:26 final size:26
Alignment explanation
Indices: 11057920--11057972 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11057910 GTTGACTCAG
11057920 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
11057946 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11057972 G
1 G
11057973 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11059143 original size:26 final size:26
Alignment explanation
Indices: 11059113--11059165 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11059103 GTTGACTTAG
*
11059113 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
11059139 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11059165 G
1 G
11059166 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11059653 original size:26 final size:26
Alignment explanation
Indices: 11059613--11059667 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
11059603 TGAGTTGGCT
*
11059613 TAAGCATACGTAGTTCATT-CCATGTC
1 TAAGCATACGAAGTTCATTCCCA-GTC
11059639 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
11059665 TAA
1 TAA
11059668 CATCGGACCG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:11060178 original size:26 final size:26
Alignment explanation
Indices: 11060130--11060181 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11060120 TTGGCTTAGC
*
11060130 CATACGGAGTTCATTTCATGTCTAAG
1 CATACGGAGTTCATTCCATGTCTAAG
11060156 CATACGGAGTTCATTCCCA-GTCTAAG
1 CATACGGAGTTCATT-CCATGTCTAAG
11060182 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATGTCTAAG
Found at i:11060924 original size:159 final size:158
Alignment explanation
Indices: 11060666--11061135 Score: 509
Period size: 158 Copynumber: 3.0 Consensus size: 158
11060656 TCCCAGATCG
* * *
11060666 AACCAGATCGAGGGTTGTGGCAG-GAGGATCGACAGCATGCGGGGGGGACCGGGCTGGTCCCCGA
1 AACCAGACCGAGGGTTGTGGCAGCGAGGATCGACAGCATG-AGGGGGGACCGGGCTGATCCCCGA
* * *
11060730 CTTGTGCATTCTACCTTTTCGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGC
65 CTTGTGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
* * *
11060795 ATAGGGAGTTCATTCCATGTCTAAGCCCC
130 ATACGGAGTTCATTCCATGTCTAAGACCA
* * * **
11060824 AGCCAGACCGAGGGTTGTGGCAGCGA-GACCGACAGCACGTAGAGGGGGACCGGGCTGATCCTTG
1 AACCAGACCGAGGGTTGTGGCAGCGAGGATCGACAGCATG-AG-GGGGGACCGGGCTGATCCCCG
* * * * * * * * *
11060888 CCTTGTGCATTTTGCCTCTCCGATCGGCTCAACGCCCGAACGCTCGTTTCATAGGTTGACTTAGG
64 ACTTGTGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* *
11060953 CATATGGAGTTCATTCCCA-GTCTAAGATCA
129 CATACGGAGTTCATT-CCATGTCTAAGACCA
* * ** * * *
11060983 AACC-GAACAGTGGGTTGCAGTAGC-AGGATTGATAGCATGCAGGGGGGACCGGGCTGATCCCCG
1 AACCAG-ACCGAGGGTTGTGGCAGCGAGGATCGACAGCATG-AGGGGGGACCGGGCTGATCCCCG
* * * **
11061046 GCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGG
64 ACTTGTGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
*
11061111 CATACGGAGTTCATTCCATATCTAA
129 CATACGGAGTTCATTCCATGTCTAA
11061136 ACATACGGAG
Statistics
Matches: 253, Mismatches: 53, Indels: 12
0.80 0.17 0.04
Matches are distributed among these distances:
157 3 0.01
158 125 0.49
159 122 0.48
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
AACCAGACCGAGGGTTGTGGCAGCGAGGATCGACAGCATGAGGGGGGACCGGGCTGATCCCCGAC
TTGTGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCA
TACGGAGTTCATTCCATGTCTAAGACCA
Found at i:11061336 original size:26 final size:26
Alignment explanation
Indices: 11061306--11061358 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11061296 GTTGACTTAG
*
11061306 GCATACAGAGTTCATCCCCTGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
11061332 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11061358 G
1 G
11061359 ATCAAATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11061339 original size:196 final size:196
Alignment explanation
Indices: 11060999--11061385 Score: 497
Period size: 196 Copynumber: 2.0 Consensus size: 196
11060989 ACAGTGGGTT
* * * * * *
11060999 GCAGTAGCAGGATTGATAGCATGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTC
1 GCAGCAGCAGGATTGACAGCACGCAAGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTACCTC
* * * ** * * *
11061064 TTCGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
66 TCCGGCCGGCTGACCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCA
* *
11061129 TATCTAAACATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGCTTGCGGCAGCTGG
131 TATCTAAACATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAATCGAGGCTTGCGGCAGCTGG
11061194 A
196 A
* * * *
11061195 GCAGCAGCAGGATTGGCAGCACGCAAGGGGGACCGAG-TCGATCCCCGACTTGTGTATTCTACCT
1 GCAGCAGCAGGATTGACAGCACGCAAGGGGGACCGGGCT-GATCCCCGACTTGCGCATTCTACCT
** *
11061259 CTCCGGCCTTCTGACCACTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCC
65 CTCCGGCCGGCTGACCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCC
* * * * * *
11061324 CTGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGAATCGAGGGTTGTGGCAG
130 ATATCTAAACATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAATCGAGGCTTGCGGCAG
11061386 TAGGATTGGC
Statistics
Matches: 161, Mismatches: 29, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
195 1 0.01
196 160 0.99
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (196 bp):
GCAGCAGCAGGATTGACAGCACGCAAGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTACCTC
TCCGGCCGGCTGACCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCA
TATCTAAACATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAATCGAGGCTTGCGGCAGCTGG
A
Found at i:11061679 original size:26 final size:26
Alignment explanation
Indices: 11061649--11061701 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11061639 GTTGACTTAG
11061649 GCATACAGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
*
11061675 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11061701 G
1 G
11061702 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11062437 original size:157 final size:159
Alignment explanation
Indices: 11062088--11062438 Score: 401
Period size: 157 Copynumber: 2.2 Consensus size: 159
11062078 CCCGCATGCC
* * * * ** * * *
11062088 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTGAGCCCCAGCTGGACCGAGGG
1 CGTTTCGTTGGTTAGCTTAGGCATACGGAGTTCATTCCACGTCAAAGACCCAACCGGACCGAGGG
* * * * * *
11062153 TTGTGGCTGCAGGATTGACAGCACGCAGAGGGGGATCAGGTCGATCCCCGACTTGCGCATTATGC
66 TTGTGGCAGCAAGATCGACAGCACACAGAGGAGGATCAGGCCGATCCCCGACTTGCGCATTATGC
*
11062218 CTCTCCGGTTGGCTCAACGCCCGTACGCT
131 ATCTCCGGTTGGCTCAACGCCCGTACGCT
* * * *
11062247 CGTTTCG-TGGTTTA-CTTAGGCGTACGGAGTTCATTCC-CGTCAAAGATCGAACCGGACTGAGG
1 CGTTTCGTTGG-TTAGCTTAGGCATACGGAGTTCATTCCACGTCAAAGACCCAACCGGACCGAGG
* * *
11062309 GTTGTGGCAGCAAGATCGACAGCACACAG-GCGAGGAT-GGGCCGGTCCCC-AGCTTGCGCATTT
65 GTTGTGGCAGCAAGATCGACAGCACACAGAG-GAGGATCAGGCCGATCCCCGA-CTTGCGCATTA
*
11062371 TGCATCTTCGGTTGGCT-AACCGCCCGTACGCT
128 TGCATCTCCGGTTGGCTCAA-CGCCCGTACGCT
11062403 CGTTTCGTTGGTTAGCTTAGGCATACGGAGTTCATT
1 CGTTTCGTTGGTTAGCTTAGGCATACGGAGTTCATT
11062439 TCATGTCTAA
Statistics
Matches: 161, Mismatches: 25, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
155 3 0.02
156 57 0.35
157 69 0.43
158 23 0.14
159 9 0.06
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (159 bp):
CGTTTCGTTGGTTAGCTTAGGCATACGGAGTTCATTCCACGTCAAAGACCCAACCGGACCGAGGG
TTGTGGCAGCAAGATCGACAGCACACAGAGGAGGATCAGGCCGATCCCCGACTTGCGCATTATGC
ATCTCCGGTTGGCTCAACGCCCGTACGCT
Found at i:11062452 original size:26 final size:25
Alignment explanation
Indices: 11062423--11062474 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
11062413 GTTAGCTTAG
*
11062423 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
*
11062449 GCATATGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
11062474 G
1 G
11062475 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:11066765 original size:158 final size:158
Alignment explanation
Indices: 11066470--11067281 Score: 646
Period size: 158 Copynumber: 5.1 Consensus size: 158
11066460 CTAAGCATAT
* * * *
11066470 GAGTTCATTCCCA-GTCTAAGATCGAAACC-GAACTGAGGGTTG-CGGCAGCAAGA-TCGGTAGC
1 GAGTTCATT-CCATGTCTAAGATC-AGACCAG-ACCGAGGGTTGTC-GCAGCAGGACT-GGAAGC
* * * * ** * *
11066531 ACGCAGTGGGGATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCG
61 ACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCG
* * *
11066596 CAC-ATCCGTTTCATGGGTTGGCTTAGGCATA-G
126 CACGCT-TGTTTCGTGGGTTGGCTTAGGCATACG
* * * * * *
11066628 GAGTTCATTCCATATGTAAGCCA-CA-ACCGGACCGAGGGTTGTCGCAACAAGACTGGAAGCATG
1 GAGTTCATTCCATGTCTAAG--ATCAGACCAGACCGAGGGTTGTCGCAGCAGGACTGGAAGCACG
* * * *
11066691 CAGAGGGGGATCGGGCCGATCCTCGACTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGGCCAG-
64 CAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGC-GCCCGC
* * * *
11066755 ACGCTTGTTTCGTAGGTTGACTTATGCATACA
127 ACGCTTGTTTCGTGGGTTGGCTTAGGCATACG
* * * * * **
11066787 GATTTCATTCCCA-GTCTAAGATCAGACTAGATCAAGGGTTGTGGCAGCAGGACTGGTTGCACGC
1 GAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGTCGCAGCAGGACTGGAAGCACGC
* * * * * * * * *
11066851 AGGTGGGATCGGACCGATCCCCGGCTTACGCATTCTGTCTCTCCGGTCGGTTGAGTGCCCGCACG
65 AGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGCACG
* * * *
11066916 CCTGTTTCATGGGTTAGCTTAGGCATAGG
130 CTTGTTTCGTGGGTTGGCTTAGGCATACG
** * * * * * *
11066945 GAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGTAGCGGGACTAGCAGCACAA
1 GAGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGTCGCAGCAGGACTGGAAGCAC-G
* * * * * * ** *
11067009 AAAGGGGGACCGGGCCGATGCTCGGCTTGTGCATTATGCCTCTTTGGCCGGCTCAGCGCCCGTAC
64 CAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGCAC
* * *
11067074 GCTTGTTTTGTGGGTTGAG-TTATGCATACA
129 GCTTGTTTCGTGGGTTG-GCTTAGGCATACG
* * * * *
11067104 GATTTCATTCCCA-GTCTAAGATCAGACCAGATCGAGGGTTG-CAGTAGTAGGA-TCGACAGCAC
1 GAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGTC-GCAGCAGGACTGGA-AGCAC
* * * * *
11067166 GCAGGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCGCCCGCA
63 GCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGCA
*
11067231 CGCTCGTTTCGTGGGTTGGCTTAGGCATACG
128 CGCTTGTTTCGTGGGTTGGCTTAGGCATACG
11067262 GAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
11067282 CATATGGAGT
Statistics
Matches: 505, Mismatches: 125, Indels: 48
0.74 0.18 0.07
Matches are distributed among these distances:
157 46 0.09
158 290 0.57
159 161 0.32
160 8 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGTCGCAGCAGGACTGGAAGCACGCA
GGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGCACGC
TTGTTTCGTGGGTTGGCTTAGGCATACG
Found at i:11067060 original size:317 final size:315
Alignment explanation
Indices: 11066473--11067282 Score: 1029
Period size: 317 Copynumber: 2.6 Consensus size: 315
11066463 AGCATATGAG
* * * *
11066473 TTCATTCCCAGTCTAAGATCGAAACCGAACTGAGGGTTGCGGCAGCAAGATCGGTAGCACGCA-G
1 TTCATTCCCAGTCTAAGATC-AGACAGATC-GAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGG
* * * *
11066537 TGGGGATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACATC
64 T-GGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCAC-GC
* * *
11066602 C-GTTTCATGGGTTGGCTTAGGCATAGGAGTTCATTCCATATGTAAGCCACAACCGGACCGAGGG
127 CTGTTTCATGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCACAACCAGACCGAGGG
* *** * *
11066666 TTGTCGCAACAAGACTGGAAGCATGCAGAGGGGGATCGGGCCGATCCTCGACTTGCGCATTATGC
192 TTGTCGCAACAAGACTAGAAGCACAAAAAGGGGGACCGGGCCGATCCTCGACTTGCGCATTATGC
11066731 CTCTTCGGCCGGCTCAGCGGCCAG-ACGCTTGTTTCGTAGGTTGACTTATGCATACAGAT
257 CTCTTCGGCCGGCTCAGC-GCCAGTACGCTTGTTTCGTAGGTTGACTTATGCATACAGAT
* * *
11066790 TTCATTCCCAGTCTAAGATCAGACTAGATCAAGGGTTGTGGCAGCAGGA-CTGGTTGCACGCAGG
1 TTCATTCCCAGTCTAAGATCAGAC-AGATCGAGGGTTGCGGCAGCAGGATC-GGTAGCACGCAGG
* * * *
11066854 TGGGATC-GGACCGATCCCCGGCTTACGCATTCTGTCTCTCCGGTCGGTTGAGTGCCCGCACGCC
64 TGGGATCAGG-CCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCC
* * *
11066918 TGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
128 TGTTTCATGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCCACAACCAGACCGAGGG
* * * ** * * * *
11066983 TTGTGGTAGCGGGACTAGCAGCACAAAAAGGGGGACCGGGCCGATGCTCGGCTTGTGCATTATGC
192 TTGTCGCAACAAGACTAGAAGCACAAAAAGGGGGACCGGGCCGATCCTCGACTTGCGCATTATGC
* * * * *
11067048 CTCTTTGGCCGGCTCAGCGCCCGTACGCTTGTTTTGTGGGTTGAGTTATGCATACAGAT
257 CTCTTCGGCCGGCTCAGCGCCAGTACGCTTGTTTCGTAGGTTGACTTATGCATACAGAT
* * * ** *
11067107 TTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGTAGTAGGATCGACAGCACGCAGGG
1 TTCATTCCCAGTCTAAGATCAGA-CAGATCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGT
*
11067172 GGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCGCCCGCACG-CTC
65 GGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCT-
*
11067236 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
129 GTTTCATGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGC
11067283 ATATGGAGTT
Statistics
Matches: 424, Mismatches: 58, Indels: 22
0.84 0.12 0.04
Matches are distributed among these distances:
315 5 0.01
316 108 0.25
317 307 0.72
318 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (315 bp):
TTCATTCCCAGTCTAAGATCAGACAGATCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGTG
GGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCTGT
TTCATGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCACAACCAGACCGAGGGTTGT
CGCAACAAGACTAGAAGCACAAAAAGGGGGACCGGGCCGATCCTCGACTTGCGCATTATGCCTCT
TCGGCCGGCTCAGCGCCAGTACGCTTGTTTCGTAGGTTGACTTATGCATACAGAT
Found at i:11067291 original size:26 final size:26
Alignment explanation
Indices: 11067255--11067307 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11067245 GTTGGCTTAG
11067255 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
11067281 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11067307 G
1 G
11067308 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11067397 original size:11 final size:11
Alignment explanation
Indices: 11067383--11067407 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
11067373 ACCATCACCA
11067383 GAGCATCGTCG
1 GAGCATCGTCG
11067394 GAGCATCGTCG
1 GAGCATCGTCG
11067405 GAG
1 GAG
11067408 AGCCTAACTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.24, G:0.40, T:0.16
Consensus pattern (11 bp):
GAGCATCGTCG
Found at i:11068695 original size:26 final size:27
Alignment explanation
Indices: 11068658--11068711 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
11068648 GTTGACTTAG
11068658 GCATACCGGAGTTCATCCCCAGTCTAA
1 GCATACCGGAGTTCATCCCCAGTCTAA
*
11068685 GCATA-CGGAGTTCATTCCCAGTCTAA
1 GCATACCGGAGTTCATCCCCAGTCTAA
11068711 G
1 G
11068712 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (27 bp):
GCATACCGGAGTTCATCCCCAGTCTAA
Found at i:11069013 original size:158 final size:159
Alignment explanation
Indices: 11068828--11069187 Score: 392
Period size: 158 Copynumber: 2.3 Consensus size: 159
11068818 ACGCCTATTC
* * *
11068828 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACC-GAATCGAGGG-TG
1 CATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAG-ACCGAGGGTTG
* * *
11068890 TGGCAGCAGGA-CTGGCAGCACG-TAGAGAGGGACCGGGTCCATCCTCGGCTTACGCATTATGCC
65 TGGCAGCAGGATC-GACAGCACGAT-G-GAGGGACCGGGTCCATCCCCAGCTTACGCATTATGCC
* * *
11068953 TCTTCGACCGACTCAACACCCGCACGCTCGTTT
127 TCTCCGACCGACTCAACACCCGCACACTCATTT
* * * *
11068986 CGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTG
1 CATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTG
* * * ** *
11069049 TGGCAGCAGGATCGACAGCACGATGGGGGGACTGGGTCGATCCCCAGCTTACGTGTTCTGCCTCT
65 TGGCAGCAGGATCGACAGCACGATGGAGGGACCGGGTCCATCCCCAGCTTACGCATTATGCCTCT
** * * *
11069114 CCGGTCGACTGAGCACCTGCACACTCATTT
130 CCGACCGACTCAACACCCGCACACTCATTT
* *
11069144 TATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
1 CATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
11069188 TATGGAGTTC
Statistics
Matches: 165, Mismatches: 29, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
157 5 0.03
158 131 0.79
159 27 0.16
160 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
CATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGT
GGCAGCAGGATCGACAGCACGATGGAGGGACCGGGTCCATCCCCAGCTTACGCATTATGCCTCTC
CGACCGACTCAACACCCGCACACTCATTT
Found at i:11069209 original size:26 final size:26
Alignment explanation
Indices: 11069159--11069211 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11069149 GTTGGCTTAG
*
11069159 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATGGAGTTCATTCCATATCTAA
11069185 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATATGGAGTTCATT-CCATATCTAA
11069211 G
1 G
11069212 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCATATCTAA
Found at i:11069586 original size:26 final size:26
Alignment explanation
Indices: 11069557--11069609 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11069547 GTTGACTTAG
*
11069557 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
11069583 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11069609 G
1 G
11069610 ATCGGGTCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11076275 original size:157 final size:157
Alignment explanation
Indices: 11076072--11076444 Score: 360
Period size: 157 Copynumber: 2.4 Consensus size: 157
11076062 CGGCTGAGTA
* * * * * * *
11076072 CCCGCGCACTCGTTTCGTGGGTTGGATTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-T
1 CCCGCACACTCATTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAT
* * * * **** *
11076136 CGGATTGAGGGTTGTGGTAGCGGGACCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTT
66 CGAACTAAGAGTTGCAACAGCAGGACCGACAGCACGT--AGGGGGACCGGGCCGATCCCCGGCTT
* * *
11076201 GCGCATTATGCCTCTTCGGTCGGCTCA-G
129 GCGCATTATGCCTCTCCGGCCGACTCACG
* ** * *
11076229 CCCGCACGCTCATTTCATGGGTTTA-CTTTTGCATATGGAGTTCATTCCCA-GTCTAAG-ATCAG
1 CCCGCACACTCATTTCATGGG-TTAGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG
* * * *
11076291 ATTGAACTAAGAGTTGCAACAGCAGGATCGATAGCACGTAGGGGGACCGGGCCGATCCCTGGCTT
64 ATCGAACTAAGAGTTGCAACAGCAGGACCGACAGCACGTAGGGGGACCGGGCCGATCCCCGGCTT
* * *
11076356 GCGCATTCTGCCTCTCCGGCCGATTGAGCG
129 GCGCATTATGCCTCTCCGGCCGACTCA-CG
** *
11076386 CCCGCACACTTGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCA
1 CCCGCACACTCATTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
11076445 TACGGAGTTC
Statistics
Matches: 171, Mismatches: 37, Indels: 15
0.77 0.17 0.07
Matches are distributed among these distances:
155 46 0.27
156 8 0.05
157 111 0.65
158 6 0.04
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
CCCGCACACTCATTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAT
CGAACTAAGAGTTGCAACAGCAGGACCGACAGCACGTAGGGGGACCGGGCCGATCCCCGGCTTGC
GCATTATGCCTCTCCGGCCGACTCACG
Found at i:11076465 original size:26 final size:26
Alignment explanation
Indices: 11076416--11076468 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11076406 GTTAGCTTAG
*
11076416 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
11076442 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
11076468 G
1 G
11076469 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:11077489 original size:155 final size:157
Alignment explanation
Indices: 11077283--11077663 Score: 378
Period size: 155 Copynumber: 2.4 Consensus size: 157
11077273 CTCTCCAGCC
* * * * * *
11077283 GGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAA
1 GGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAA
* *** ** * *
11077348 GCCCCAG-CCCAATTGAGGGCTGTGGCAGCGGGACCTG-CAGCACATAGAGGGGGACTGGGCCGA
66 GCACCAGACCCAACCAAGGGCTGCAGCAGCAGGA-CTGACAGCACACAG-GGGGGACTGGGCCGA
* *
11077411 TCCTCGGCTTGCGCATTATGCCTCTTCG-
129 TCCCCGGCTTGCACATTATGCCTCTTCGA
* * * * *
11077439 GTC-CAGCACCCGCACGCTCATTTCGTGGGTTGACTTATGCATATGGAGTTCATTTCCA-GTCTA
1 GGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCA-TTCCATGTCTA
* * * * * * *
11077502 AG-ATCAGACCGAACCAAGGGTTGCAGCAGTAGGATTGATAGCACGCAGGGGGGACTGGGCCGAT
65 AGCACCAGACCCAACCAAGGGCTGCAGCAGCAGGACTGACAGCACACAGGGGGGACTGGGCCGAT
*
11077566 CCCCGGCTTGCACATTCTGCCTCTTCGACA
130 CCCCGGCTTGCACATTATGCCTCTTCG--A
* * * *
11077596 GGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAAGCATACCGAGTTCATTCCATGTCTAA
1 GGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAA
11077661 GCA
66 GCA
11077664 TACGGAGTTC
Statistics
Matches: 180, Mismatches: 36, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
154 45 0.25
155 72 0.40
156 7 0.04
157 7 0.04
158 48 0.27
159 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAA
GCACCAGACCCAACCAAGGGCTGCAGCAGCAGGACTGACAGCACACAGGGGGGACTGGGCCGATC
CCCGGCTTGCACATTATGCCTCTTCGA
Found at i:11077685 original size:26 final size:26
Alignment explanation
Indices: 11077632--11077687 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
11077622 TGGGTTGGCT
*
11077632 TAAGCATACCGAGTTCATTCCATGTC
1 TAAGCATACCGAGTTCATTCCATATC
*
11077658 TAAGCATACGGAGTTCATTCCCA-ATC
1 TAAGCATACCGAGTTCATT-CCATATC
11077684 TAAG
1 TAAG
11077688 ATTTTGAGCC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACCGAGTTCATTCCATATC
Found at i:11080858 original size:25 final size:24
Alignment explanation
Indices: 11080830--11080877 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
11080820 AGGCATACGA
11080830 AGTTCA-TCCCTAGTCTAAGCATTGG
1 AGTTCATTCCC-AGTCTAAG-ATTGG
11080855 AGTTCATTCCCAGTCTAAGATTG
1 AGTTCATTCCCAGTCTAAGATTG
11080878 AATCGGATCG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 4 0.18
25 14 0.64
26 4 0.18
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (24 bp):
AGTTCATTCCCAGTCTAAGATTGG
Found at i:11081155 original size:159 final size:159
Alignment explanation
Indices: 11080991--11081349 Score: 388
Period size: 158 Copynumber: 2.3 Consensus size: 159
11080981 GCCCGTTTTA
* * *
11080991 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CC-GAACCGAGGGTTGTG
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAG-ACCGAGGGTTGCG
** ** * * ** * *
11081054 GTAGTGGGACCGGCAACATGCAAAGCGGGACCGGGCCGATCGTCGGCTTGCGCATTATGCCTCT-
65 ACAGCAGGACCGACAACACG-AAAGCGGGACCGGGCCGATCCCCAGCTTGCGCATTATACCTCTC
* *
11081118 TCGACAGGCTTAGCG-CCTGCACGCTCGTTTCG
129 T-GACAGGCTAAGCGCCCT-CACGCTCATTTCG
* * * *
11081150 TGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGACCAGACCGAGGGTTGCG
1 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGCG
* * * * * *
11081213 ACAGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCT
65 ACAGCAGGACCGACAACACGAAAGCGGGACCGGGCCGATCCCCAGCTTGCGCATTATACCTCTCT
*
11081278 GGCAGGCTAAGCGCCCTCACGCTCATTTCG
130 GACAGGCTAAGCGCCCTCACGCTCATTTCG
*
11081308 TTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
11081350 TACGAAGTTC
Statistics
Matches: 164, Mismatches: 29, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
157 3 0.02
158 93 0.57
159 64 0.39
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGA
CAGCAGGACCGACAACACGAAAGCGGGACCGGGCCGATCCCCAGCTTGCGCATTATACCTCTCTG
ACAGGCTAAGCGCCCTCACGCTCATTTCG
Found at i:11081299 original size:158 final size:156
Alignment explanation
Indices: 11080853--11081347 Score: 453
Period size: 159 Copynumber: 3.1 Consensus size: 156
11080843 TCTAAGCATT
* * *
11080853 GGAGTTCATTCCCA-GTCTAAGATTGAATCGGATCGAGGGTTGC-AGTAGCAGGATCGACAGCAC
1 GGAGTTCATT-CCATGTCTAAGATCGAA-CCGACCGAGGGTTGCGA-TAGCAGGATCGACAGCAC
* * * * * * * *
11080916 GCAGGGGGATCAGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGT-A
63 GAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCAGGCTAAGCGCCC-TCA
* * ** *
11080980 AGCCCGTTTTATGGGTTGGCTTAGGCATAG
127 CGCTCGTTTCGTGGGTTGGCTTAGGCATAC
** * * * * ** * * *
11081010 GGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGTAGTGGGACCGGCAACATGC
1 GGAGTTCATTCCATGTCTAAGATCGAACCG-ACCGAGGGTTGCGATAGCAGGATCGACAGCA--C
* * ** * * *
11081075 AAAGCGGGACCGGGCCGATCGTCGGCTTGCGCATTATGCCTCT-TCGACAGGCTTAGCG-CCTGC
63 GAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCT-GGCAGGCTAAGCGCCCT-C
* *
11081138 ACGCTCGTTTCGTGGGTTGACTTATGCATAC
126 ACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* *
11081169 GGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACG
1 GGAGTTCATT-CCATGTCTAAGATCGAACC-GACCGAGGGTTGCGATAGCAGGATCGACAGCACG
* * *
11081233 TAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCTGGCAGGCTAAGCGCCCTCAC
64 -AAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCAGGCTAAGCGCCCTCAC
* *
11081298 GCTCATTTCGTTGGTTGGCTTAGGCATAC
128 GCTCGTTTCGTGGGTTGGCTTAGGCATAC
11081327 GGAGTTCATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
11081348 CATACGAAGT
Statistics
Matches: 262, Mismatches: 62, Indels: 27
0.75 0.18 0.08
Matches are distributed among these distances:
156 5 0.02
157 45 0.17
158 93 0.35
159 115 0.44
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GGAGTTCATTCCATGTCTAAGATCGAACCGACCGAGGGTTGCGATAGCAGGATCGACAGCACGAA
GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCAGGCTAAGCGCCCTCACGCT
CGTTTCGTGGGTTGGCTTAGGCATAC
Found at i:11081358 original size:26 final size:26
Alignment explanation
Indices: 11081321--11081373 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11081311 GTTGGCTTAG
*
11081321 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
11081347 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11081373 G
1 G
11081374 ATTTTGTGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11081463 original size:11 final size:11
Alignment explanation
Indices: 11081447--11081486 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
11081437 GGGTACCATT
11081447 GTCGGAGCATC
1 GTCGGAGCATC
11081458 GTCGGAGCATC
1 GTCGGAGCATC
* *
11081469 GCCAGAGCATC
1 GTCGGAGCATC
11081480 GTCGGAG
1 GTCGGAG
11081487 AGCCTAACCG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.20, C:0.28, G:0.38, T:0.15
Consensus pattern (11 bp):
GTCGGAGCATC
Found at i:11082094 original size:26 final size:26
Alignment explanation
Indices: 11082064--11082116 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11082054 GTTGACTTAG
11082064 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
11082090 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
11082116 G
1 G
11082117 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:11082520 original size:159 final size:158
Alignment explanation
Indices: 11082090--11082520 Score: 424
Period size: 159 Copynumber: 2.7 Consensus size: 158
11082080 CCTAGTCTAA
*
11082090 GCATACGGAGTTTATTCCTAGTCTAAGATCAGACCAGACCGAGCGTTGCGGCAGCAGGATC-AGC
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAG-GTTGCGGCAGCAGGATCGA-C
* * * * * *
11082154 AGCACGCA-AGGGGGACCGGGCTGATCCCCGGCTTGCACATTCTGCTTTTCCGATCGGCTGAGCA
64 AGCTCGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTCAGCA
* * * *
11082218 CCCGCACGCTCGTTTCGTGGTTTGGCTTAG
129 CCCGCACGCTCATTTAGTGGGTTGACTTAG
* * ** * * * * *
11082248 GCTTAGGGAGTTCATTCC-ATGTCTAAGCCCCAG-CTAGAACGAGGGTTGTGGTAGCAGGACCGA
1 GCATACGGAGTTCATTCCTA-GTCTAAG-ATCAGACCAGACCGA-GGTTGCGGCAGCAGGATCGA
* * * * * * *
11082311 CAACAT-GCAGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCTGGTCGACTCAG
63 CAGC-TCGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTCAG
* *
11082375 CATCCGCACTCTCATTTAGTGGGTTGACTTAG
127 CACCCGCACGCTCATTTAGTGGGTTGACTTAG
* * *
11082407 GCATACGAAGTTCATTCCTAGTCTAAGATCGGACCAGACCGACGGTTACGGCAGTC-GGATCGAC
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGA-GGTTGCGGCAG-CAGGATCGAC
* * * *
11082471 AGCTCGCAGGGGGGGAGCGAGCTGATCCCCGGCTTGCGCATTCTACCTCT
64 AGCTCGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCT
11082521 TCGGTTGGCT
Statistics
Matches: 213, Mismatches: 50, Indels: 19
0.76 0.18 0.07
Matches are distributed among these distances:
157 1 0.00
158 52 0.24
159 158 0.74
160 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGTTGCGGCAGCAGGATCGACAG
CTCGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTCAGCACC
CGCACGCTCATTTAGTGGGTTGACTTAG
Found at i:11082601 original size:26 final size:26
Alignment explanation
Indices: 11082563--11082618 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
11082553 TGGTTTGGCT
* *
11082563 TAAGCATATAGAGTTCATTCC-ATGTC
1 TAAGCAGACAGAGTTCATTCCTA-GTC
11082589 TAAGCAGACAGAGTTCATTCCTAGTC
1 TAAGCAGACAGAGTTCATTCCTAGTC
11082615 TAAG
1 TAAG
11082619 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCAGACAGAGTTCATTCCTAGTC
Found at i:11083457 original size:158 final size:158
Alignment explanation
Indices: 11083007--11083474 Score: 462
Period size: 158 Copynumber: 3.0 Consensus size: 158
11082997 TGATTGGACC
* * * * * *
11083007 GGATCGAGGGTTACGGCGGTAGGATCGACAGCATGTAGGGGGTACCAGGTCGATCCCCGG-GTTA
1 GGATCGAGGGTTACGGCAGTAGGATCGACAGCACGTAGGGGGGACCAGGCCGATCCTCGGCG-TG
* * * * *
11083071 CGCATTCTGCCTC-TCTGGCCGACTGAGTGCCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
65 CGCATTCTGCCTCTTC-GGCCGACTGAGCGCCTGTACGCTCGTTTCATGGGTTGGCTTAGGCAAA
*
11083135 GGGAGTTCATTCCATGTCTAAGCCCCAGTT
129 CGGAGTTCATTCCATGTCTAAGCCCCAGTT
* ** * * * * *
11083165 GGATCGAGGGTTATGGCAACAGGACCGGCAGCACGTAGAGGGGGACCGGGCCGATCCTCAGCTTG
1 GGATCGAGGGTTACGGCAGTAGGATCGACAGCACGTAG-GGGGGACCAGGCCGATCCTCGGCGTG
* ** * * * * * * *
11083230 CGCATTATGCCTCTTCGGTTGGCTCAACGCCTGTACGCTCATTTCATGGGTTGACTTATGCAAAT
65 CGCATTCTGCCTCTTCGGCCGACTGAGCGCCTGTACGCTCGTTTCATGGGTTGGCTTAGGCAAAC
** *
11083295 GGAGTTCATTCCCA-GTCTAAG-ATCGGATT
130 GGAGTTCATT-CCATGTCTAAGCCCCAG-TT
* *
11083324 GGA-CTGAGGGTTGCGGCAGTAGGATCGATAGCACGT-GGGGGAGACCAGGCCGATCCTCGGCGT
1 GGATC-GAGGGTTACGGCAGTAGGATCGACAGCACGTAGGGGG-GACCAGGCCGATCCTCGGCGT
* * * * * *
11083387 GCACATTCTGCCTCTTCGACCGACTGAGCACCCGTATGCTCGTTTCATGGGTTGGCTTAGGCAGA
64 GCGCATTCTGCCTCTTCGGCCGACTGAGCGCCTGTACGCTCGTTTCATGGGTTGGCTTAGGCAAA
11083452 CGGAGTTCATTCCATGTCTAAGC
129 CGGAGTTCATTCCATGTCTAAGC
11083475 ATACGGAGTT
Statistics
Matches: 243, Mismatches: 58, Indels: 17
0.76 0.18 0.05
Matches are distributed among these distances:
157 7 0.03
158 120 0.49
159 111 0.46
160 5 0.02
ACGTcount: A:0.19, C:0.25, G:0.32, T:0.24
Consensus pattern (158 bp):
GGATCGAGGGTTACGGCAGTAGGATCGACAGCACGTAGGGGGGACCAGGCCGATCCTCGGCGTGC
GCATTCTGCCTCTTCGGCCGACTGAGCGCCTGTACGCTCGTTTCATGGGTTGGCTTAGGCAAACG
GAGTTCATTCCATGTCTAAGCCCCAGTT
Found at i:11084920 original size:159 final size:159
Alignment explanation
Indices: 11084557--11085057 Score: 376
Period size: 159 Copynumber: 3.2 Consensus size: 159
11084547 CCCAGCGTAA
* *
11084557 GCATACGGAGTTCATTCCCAGTCTAA-GATTGGACC-AGACCGAGGGTTGC-GACAGCAGGATCG
1 GCATACGGAGTTCATTCCCAGTCTAATG-TTAGACCGA-ACTGAGGGTTGCAG-CAGCAGGATCG
* * * * * * * * * *
11084619 ATAGCACGCA-AGGGGGATC-GAGCCAATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGACTGA
63 ACAGCACGCAGAGGGGGACCAG-GCCGATCCCCGACTTGCGCATTATACCTCTCTGGCTGGCTCA
* ** * * **
11084682 GCGCCCG-ATGCCCGTTTCATGGGTTGGCTTAG
127 GCACCCGCACACTCATTTCATGGGTTAACTTAG
* ** * * ** **
11084714 GCATAGGGAGTTCATT-CCATGTCTAA-GCCCCAG-CC-AGACTAAAGGTTGTGGCAGTGGGATC
1 GCATACGGAGTTCATTCCCA-GTCTAATG--TTAGACCGA-ACTGAGGGTTGCAGCAGCAGGATC
** * * * * * * *
11084775 GGTAGCATGCAGAGGGGGACCGGGCTGATCCTCGATTTGCGTATTATGCCTCT-TCGGCTGGCTC
62 GACAGCACGCAGAGGGGGACCAGGCCGATCCCCGACTTGCGCATTATACCTCTCT-GGCTGGCTC
* * * **
11084839 AGCGCCCGCACGCTCATTTTATGGGTTAACTTTT
126 AGCACCCGCACACTCATTTCATGGGTTAACTTAG
11084873 GCATACGGAGTTCATTCCCAGTCTAATGTTAGACCGAACTGAGGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAATGTTAGACCGAACTGAGGGTTGCAGCAGCAGGATCGACA
* * * * *
11084938 GCACGCAGGGGGGGACTAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCTGGCTGGCTGAGCAC
66 GCACGCAGAGGGGGACCAGGCCGATCCCCGACTTGCGCATTATACCTCTCTGGCTGGCTCAGCAC
* * * **
11085003 CTGCACACTCGTTTCGTGGGTTGGCTTAG
131 CCGCACACTCATTTCATGGGTTAACTTAG
11085032 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11085058 GAGTTTGAGC
Statistics
Matches: 266, Mismatches: 66, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
156 3 0.01
157 51 0.19
158 49 0.18
159 157 0.59
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAATGTTAGACCGAACTGAGGGTTGCAGCAGCAGGATCGACA
GCACGCAGAGGGGGACCAGGCCGATCCCCGACTTGCGCATTATACCTCTCTGGCTGGCTCAGCAC
CCGCACACTCATTTCATGGGTTAACTTAG
Found at i:11085782 original size:26 final size:26
Alignment explanation
Indices: 11085730--11085782 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11085720 GTTGACTTAG
*
11085730 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
11085756 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11085782 G
1 G
11085783 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11086059 original size:158 final size:158
Alignment explanation
Indices: 11085756--11086130 Score: 362
Period size: 158 Copynumber: 2.4 Consensus size: 158
11085746 CCCAGTTTAA
* * *
11085756 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGCGATAGCAGGATCGATA
1 GCATATGGAGTTCATTCCTAGTCCAAGACCAGACCGGACTGAGGGTTGCGACAGCAGGATCGATA
* * * * * ** *
11085821 GCACGCAGAGAGGATCGAGTTGATCCCCGGCTTACGCATTCTACCTCTCTGGTCGGCTGAGCACC
66 GCACACAGAGAGGATCGAGTCGATCCCCAGCTCACGCATTATACCTCTCTGACCGGCTCAGCACC
* * * * *
11085886 TGTAAGCTCGTTTCGTGGGTTGGCTTTG
131 CGCAAGCTCGTTTCGTGGGTCGACTTAG
* * * * *
11085914 GCATATGGAGTTCATTCC-ATGTCCAAGCCCCAG-CCGGACTGAGGGTTGTGGCAGCGGGATCGG
1 GCATATGGAGTTCATTCCTA-GTCCAAG-ACCAGACCGGACTGAGGGTTGCGACAGCAGGATCGA
* * *
11085977 TAGCACACAGAGGGGGATCG-GATCGATCCCCAGCTCACGCATTATGCCTCTCTGACCGTCTCAG
64 TAGCACACAGA-GAGGATCGAG-TCGATCCCCAGCTCACGCATTATACCTCTCTGACCGGCTCAG
* *
11086041 CGCCCGCACGCTCG-TTCGTGGGTCGACTTAG
127 CACCCGCAAGCTCGTTTCGTGGGTCGACTTAG
* * * * * * * * * *
11086072 GCATACGGAGTTCATTCCCAATCTATGATCAGACCAGACAGAGGGTTACGGCAGCAGGA
1 GCATATGGAGTTCATTCCTAGTCCAAGACCAGACCGGACTGAGGGTTGCGACAGCAGGA
11086131 CTAGCAGCAG
Statistics
Matches: 174, Mismatches: 37, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
157 4 0.02
158 116 0.67
159 54 0.31
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCTAGTCCAAGACCAGACCGGACTGAGGGTTGCGACAGCAGGATCGATA
GCACACAGAGAGGATCGAGTCGATCCCCAGCTCACGCATTATACCTCTCTGACCGGCTCAGCACC
CGCAAGCTCGTTTCGTGGGTCGACTTAG
Found at i:11086462 original size:26 final size:26
Alignment explanation
Indices: 11086426--11086478 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11086416 GTTGACTTAC
*
11086426 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
11086452 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11086478 G
1 G
11086479 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11087491 original size:867 final size:869
Alignment explanation
Indices: 11086133--11087696 Score: 1950
Period size: 867 Copynumber: 1.8 Consensus size: 869
11086123 CAGCAGGACT
* * * * *
11086133 AGCAGCAGGATCAGCAGCACGCAGGGGGAACTGGGTCGATCCCCGGCTTGCACATTCTACCTCTC
1 AGCAACAGGATCAGCAGCACGCAAGAGGAACCGGGTCAATCCCCGGCTTGCACATTCTACCTCTC
* *
11086198 CAACCGGTTGAGCACCCGTACGCTCGATTTGTGGGTTGGCTTAGGCAGACGGAGTTCATTCCATG
66 CAACCGGTTGAGCACCCGCACGCTCGATTTATGGGTTGGCTTAGGCAGACGGAGTTCATTCCATG
* *** * * * *
11086263 TCTATGCCCCGATTGGAACGAGGGTTGTGGCAGCAAGACCGGCAGTGAGATCTGTAGCACGTAGA
131 TCTAAGCCCCGAACCGAACGAGGGTTGTGGCAGCAAGACCAGCAGCGAGATCTGCAGCACGCAGA
* * * * * *
11086328 GGGGGATCGGGCTAATCCTCGGCTTAGGCACCATGCCTCTCCGATCGACCACTCCGGTCTGCTGA
196 GGGGGATCGAGCTAATCCCCGACTTAGGCACCATGCCTCTCCGACCGACCACTCCAGTCCGCTGA
* * * * *
11086393 GCGCCCGCACACTCGTTTCGTGGGTTGACTTACGCATATGGAGTTCATCCCCAGTCTAAGCATAC
261 GCACCCGCACACTCATTTCGAGGGTTGACTTACGCATACGGAGTTCATCCCCAGTCTAACCATAC
* * * **
11086458 GGAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGTAGGATCGGTAGCATGC
326 AGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGACAGCATGC
* * ** * * *
11086523 AGGAGGGACCGGGTCGATCCTCGACTTGTGCATTCTGCCTTTTCGACCGGCTGAGCCCCCGTACG
391 AGGAGGGACCGGCTCAATCCTCGACTTACGCATTCTGCCTCTTCGACCGACTGAGCCCCCGCACG
*** *
11086588 CCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAACCCCAGCCGAA-CTGA
456 CCCGTTTCAAGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCGAATC-GA
* * * * *
11086652 GGGCTGTGGCAGCAGGACCGACAGCACGCAGAAGAGGATCGGGCTAATCCCCGGCTTACGCATTA
520 GGGCTGTGGCAGCAGGACCGACAGCACACAGAAGAGGACCGAGCCAATCCCCGGCTTACACATTA
* * * * * *
11086717 TGCCTCTTCAGCCAGGTCAGCGTCCGCACGCT-AGTTTCGTGAGTTGACTTATGCATACGAAGTT
585 TGCCTCTTCAGCCAGCTCAACGCCCGAACACTCA-TTTCGTGAGTTGACTTAGGCATACGAAGTT
* * *
11086781 CATTCCTAGTCTAAGATC-GAACCAGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCAGGTG
649 CATTCCCAGTCTAAGATCAGAACCA-ACCGAGGGTTATAGCAGCAAGATCGACAGCACGCAGGTG
11086845 GGGATCAGGTCGATCCCCGACTTGTGCATTTTGCCTCTCTGGTCGGCTAAGCGCCTACACGTTCA
713 GGGATCAGGTCGATCCCCGACTTGTGCATTTTGCCTCTCTGGTCGGCTAAGCGCCTACACGTTCA
11086910 TTTCGTGGGTTGACCTAGGCATACGAGTTCATCCCTAGTCTAAACATACGGAGTTCAATTCCAGC
778 TTTCGTGGGTTGACCTAGGCATACGAGTTCATCCCTAGTCTAAACATACGGAGTTCAATTCCAGC
11086975 CTAAGATCAGATCGAATCGAGGGTTAC
843 CTAAGATCAGATCGAATCGAGGGTTAC
* * *
11087002 AGCAACAGGATCGGTAGCACGCAAGAGG-ACCGGGTCAATCCCCGGCTTGCACATTCTGCCTCTC
1 AGCAACAGGATCAGCAGCACGCAAGAGGAACCGGGTCAATCCCCGGCTTGCACATTCTACCTCTC
** * * *
11087066 CGGCTGGTTGAGCGCCCGCACGCTC-ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
66 CAACCGGTTGAGCACCCGCACGCTCGATTT-ATGGGTTGGCTTAGGCAGACGGAGTTCATTCCAT
* * *
11087130 GTCTAAGCCCC-AACCGAACAGAGGGTTGTGGCAGCAAGATCAGCAGCGGGAT-TGGCAGCATGC
130 GTCTAAGCCCCGAACCGAAC-GAGGGTTGTGGCAGCAAGACCAGCAGCGAGATCT-GCAGCACGC
* * ** * * * *
11087193 AGAGGGGGCT-GAGCTGATCCCCGACTT-GTGCATTATGCCTCTCTGGCCGGCCTCTCCAG-CCG
193 AGAGGGGGATCGAGCTAATCCCCGACTTAG-GCACCATGCCTCTCCGACCGACCACTCCAGTCCG
* * **
11087255 ATTGAGCACCCGCACGCTCATTTCGAGGGTTGACTTA-GTCATACGGAGTTCATCCGTAGTCTAA
257 -CTGAGCACCCGCACACTCATTTCGAGGGTTGACTTACG-CATACGGAGTTCATCCCCAGTCTAA
* * *
11087319 CCATATAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGC-AGCAGCAGGATCGAC
320 CCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGA-CAGCAGGATCGAC
* * * **
11087383 AGCATGCAGGGGGGATCGAGCT-AATCC-CTGCCTTACGCATTCTGCCTCTTCGGTCGACTGAGC
384 AGCATGCAGGAGGGACCG-GCTCAATCCTC-GACTTACGCATTCTGCCTCTTCGACCGACTGAGC
* * * * *
11087446 GCCCGCACGTCTGTTTCAAGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
447 CCCCGCACGCCCGTTTCAAGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGC
* * * * * * * *
11087511 CGGATCGATGGTTGTGGCAGCGGGACTGACAGCACACAGAGGGGGACCGAGCCGATCCCCGGCTT
512 CGAATCGAGGGCTGTGGCAGCAGGACCGACAGCACACAGAAGAGGACCGAGCCAATCCCCGGCTT
* * * * *
11087576 GCACATTATGCCTCTTCGGTCATCTCAACGCCCGAACACTCATTTCGTGGGTTGACTTAGGCATA
577 ACACATTATGCCTCTTCAGCCAGCTCAACGCCCGAACACTCATTTCGTGAGTTGACTTAGGCATA
* * *
11087641 CGAAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTATAGCAGCAGGATC
642 CGAAGTTCATTCCCAGTCTAAGATCAGAACCAACCGAGGGTTATAGCAGCAAGATC
11087697 AATAGCATGT
Statistics
Matches: 575, Mismatches: 108, Indels: 26
0.81 0.15 0.04
Matches are distributed among these distances:
866 6 0.01
867 400 0.70
868 146 0.25
869 23 0.04
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (869 bp):
AGCAACAGGATCAGCAGCACGCAAGAGGAACCGGGTCAATCCCCGGCTTGCACATTCTACCTCTC
CAACCGGTTGAGCACCCGCACGCTCGATTTATGGGTTGGCTTAGGCAGACGGAGTTCATTCCATG
TCTAAGCCCCGAACCGAACGAGGGTTGTGGCAGCAAGACCAGCAGCGAGATCTGCAGCACGCAGA
GGGGGATCGAGCTAATCCCCGACTTAGGCACCATGCCTCTCCGACCGACCACTCCAGTCCGCTGA
GCACCCGCACACTCATTTCGAGGGTTGACTTACGCATACGGAGTTCATCCCCAGTCTAACCATAC
AGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGACAGCATGC
AGGAGGGACCGGCTCAATCCTCGACTTACGCATTCTGCCTCTTCGACCGACTGAGCCCCCGCACG
CCCGTTTCAAGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCGAATCGAG
GGCTGTGGCAGCAGGACCGACAGCACACAGAAGAGGACCGAGCCAATCCCCGGCTTACACATTAT
GCCTCTTCAGCCAGCTCAACGCCCGAACACTCATTTCGTGAGTTGACTTAGGCATACGAAGTTCA
TTCCCAGTCTAAGATCAGAACCAACCGAGGGTTATAGCAGCAAGATCGACAGCACGCAGGTGGGG
ATCAGGTCGATCCCCGACTTGTGCATTTTGCCTCTCTGGTCGGCTAAGCGCCTACACGTTCATTT
CGTGGGTTGACCTAGGCATACGAGTTCATCCCTAGTCTAAACATACGGAGTTCAATTCCAGCCTA
AGATCAGATCGAATCGAGGGTTAC
Found at i:11087690 original size:159 final size:158
Alignment explanation
Indices: 11087327--11087696 Score: 376
Period size: 159 Copynumber: 2.3 Consensus size: 158
11087317 AACCATATAG
* **
11087327 AGTTCATTCCCAGTCTAAGATCAGA-CTGGACCGAGGGTTGCAGCAGCAGGATCGACAGCATGCA
1 AGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGTAGCAGCAGGATCGACAGCACACA
* * * * * * *
11087391 GGGGGGATCGAGCTAATCCCTGCCTTACGCATTCTGCCTCTTCGGTCGACTGAGCGCCCGCACGT
65 GGGGGGACCGAGCCAATCCCCGCCTTACACATTATGCCTCTTCGGTCGACTCAACGCCCGCACGT
* * * *
11087456 CTGTTTCAAGGGTTGGCTTAGGCATAGGG
130 CTATTTCAAGGGTTGACTTAGGCATACGA
** * * * *
11087485 AGTTCATT-CCATGTCTAAGCCCCAG-TCGGATCGATGGTTGTGGCAGCGGGA-CTGACAGCACA
1 AGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGTAGCAGCAGGATC-GACAGCACA
* * *
11087547 CAGAGGGGGACCGAGCCGATCCCCGGCTTGCACATTATGCCTCTTCGGTC-ATCTCAACGCCCGA
63 CAG-GGGGGACCGAGCCAATCCCCGCCTTACACATTATGCCTCTTCGGTCGA-CTCAACGCCCG-
**
11087611 ACAC-TC-ATTTCGTGGGTTGACTTAGGCATACGA
125 -CACGTCTATTTCAAGGGTTGACTTAGGCATACGA
* *
11087644 AGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTATAGCAGCAGGATC
1 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTAGCAGCAGGATC
11087697 AATAGCATGT
Statistics
Matches: 168, Mismatches: 33, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
157 4 0.02
158 48 0.29
159 107 0.64
160 6 0.04
161 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTAGCAGCAGGATCGACAGCACACAG
GGGGGACCGAGCCAATCCCCGCCTTACACATTATGCCTCTTCGGTCGACTCAACGCCCGCACGTC
TATTTCAAGGGTTGACTTAGGCATACGA
Found at i:11087992 original size:26 final size:26
Alignment explanation
Indices: 11087963--11088015 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11087953 GTTGAATTAG
11087963 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
11087989 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
11088015 G
1 G
11088016 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:11088501 original size:26 final size:26
Alignment explanation
Indices: 11088465--11088517 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11088455 GTTGGCTTAG
11088465 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
11088491 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11088517 G
1 G
11088518 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11089015 original size:342 final size:349
Alignment explanation
Indices: 11088416--11089387 Score: 856
Period size: 342 Copynumber: 2.8 Consensus size: 349
11088406 CGCATTCTGG
* * * * * *
11088416 CTCTCTGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
1 CTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTCAAGCATACGGAGTTCATC
* * * * * *
11088481 CCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACGGAGGGTTGTGACCGT
66 CCATATCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTGA-C--
* * *
11088546 AGGACCAGCAGTAGGATCGACAGCACACAGGGGGGATCGGGCTGATCCTCGGCTTGCGCATTCTA
128 AGGA-CAGCA--AGGATAGACAGCACACAGGGGGGATCGGGCTGATCCCCGACTTGCGCATTCTA
* * * * * * *
11088611 CCTCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCCTGGGTTGGCTTTGGCATATGGAGTTCAT
190 CCTCTCCGACCGACTGAGCGCCCGCACACCCGTTTCCTGAGTTGGCTTAGGCATAAGGAGTTCAT
* ** * * * * *
11088676 TCCATGTCTAAGGCCCAGTCGGACTATGGGTTGTGGCAGCGGGATCA-GCAGTACGCATAGGGGG
255 TCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAGCGAGA-CAGGCAGCACGCAGAGGGGG
11088740 ATCGACCTGATCCTCAAAATTTGCACTATGC
319 ATCGACCTGATCCTCAAAATTTGCACTATGC
* * *
11088771 CTCTCCGACCGACTGAGCTCCCGCACGCTCGTTTCGTGGGTTGAC-CAAGCTTATGGAGTTCATC
1 CTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTCAAGCATACGGAGTTCAT-
*
11088835 CCCA-ATCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGG-T-TG-C-G
65 CCCATATCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTGACAG
* * * * *
11088895 G-CAGC-AGGATAGGCAGCACGCAGGGGGGATCGGGCTGATCCCCGATTTTCGCATTCTGCCTCT
130 GACAGCAAGGATAGACAGCACACAGGGGGGATCGGGCTGATCCCCGACTTGCGCATTCTACCTCT
* ** **
11088958 CCGATCGGTTGAGCGCCCGCACACCCGTTTTGTGAGTTGGCTTAGGCATAAGGAGTTCATTCCAT
195 CCGACCGACTGAGCGCCCGCACACCCGTTTCCTGAGTTGGCTTAGGCATAAGGAGTTCATTCCAT
* *
11089023 GTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAGCGAGACAGGCAGCACGCAGAGGGGGACCGGG
260 GTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAGCGAGACAGGCAGCACGCAGAGGGGGATC-GA
**** * *
11089088 CC-GATCC-CCGGCTTGTGCATTCTGC
324 CCTGATCCTCAAAATT-TGCACTATGC
* * * * * * * * *
11089113 CTGTCCGACCGGCTAAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGTAGTTCATT
1 CTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTCAAGCATACGGAGTTCATC
** * * * * * * *
11089178 CCATGCCTAAGCATATGGAGTTCATTCCCGGTCTAAGATTGGACCAAACCGAGGATTACG-GCAG
66 CCATATCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTT--GTG-A-
* * * * ** * *
11089242 CAGGACCAGTAGCAGGATCGATAGCACGTA-AGGGGTGATCGGGCCAATCCTC-AGCTTGTGCAT
127 CAGGA-CAGCA--AGGATAGACAGCAC--ACAGGGGGGATCGGGCTGATCCCCGA-CTTGCGCAT
* * * ** * * * * *
11089305 TCTGCCCCTCCCACCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
186 TCTACCTCTCCGACCGACTGAGCGCCCGCACACCCGTTTCCTGAGTTGGCTTAGGCATAAGGAGT
* *
11089370 TCTTTTCATGTCTAAGCC
251 TCATTCCATGTCTAAGCC
11089388 GGACCGAGGG
Statistics
Matches: 498, Mismatches: 97, Indels: 43
0.78 0.15 0.07
Matches are distributed among these distances:
341 5 0.01
342 208 0.42
343 57 0.11
344 1 0.00
345 4 0.01
346 1 0.00
347 2 0.00
349 1 0.00
350 3 0.01
352 5 0.01
353 1 0.00
354 58 0.12
355 56 0.11
356 96 0.19
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (349 bp):
CTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTCAAGCATACGGAGTTCATC
CCATATCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTGACAGG
ACAGCAAGGATAGACAGCACACAGGGGGGATCGGGCTGATCCCCGACTTGCGCATTCTACCTCTC
CGACCGACTGAGCGCCCGCACACCCGTTTCCTGAGTTGGCTTAGGCATAAGGAGTTCATTCCATG
TCTAAGCCCCAACCGGACCAAGGGTTGTGGCAGCGAGACAGGCAGCACGCAGAGGGGGATCGACC
TGATCCTCAAAATTTGCACTATGC
Found at i:11089156 original size:159 final size:158
Alignment explanation
Indices: 11088881--11089189 Score: 406
Period size: 159 Copynumber: 1.9 Consensus size: 158
11088871 GATCGAATCA
* * * * *
11088881 GACCGAGGGTTGCGGCAGCAGGATAGGCAGCACGCAGGGGGGATCGGGCTGATCCCCGATTTTCG
1 GACCAAGGGTTGCGGCAGCAGGACAGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGATTGTCG
* * * * *
11088946 CATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACACCCGTTTTGTGAGTTGGCTTAGGCATAAGG
66 CATTCTGCCTCTCCGACCGGCTAAGCGCCCGCACACCCATTTCGTGAGTTGGCTTAGGCATAAGG
*
11089011 AGTTCATTCCATGTCTAAGCCCCAACCG
131 AGTTCATTCCATGCCTAAGCCCCAACCG
* *
11089039 GACCAAGGGTTGTGGCAGC-GAGACAGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTG
1 GACCAAGGGTTGCGGCAGCAG-GACAGGCAGCACGCAG-GGGGGACCGGGCCGATCCCC-GATTG
* * * *
11089103 T-GCATTCTGCCTGTCCGACCGGCTAAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA
63 TCGCATTCTGCCTCTCCGACCGGCTAAGCGCCCGCACACCCATTTCGTGAGTTGGCTTAGGCATA
* *
11089167 CGTAGTTCATTCCATGCCTAAGC
128 AGGAGTTCATTCCATGCCTAAGC
11089190 ATATGGAGTT
Statistics
Matches: 129, Mismatches: 19, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
157 1 0.01
158 32 0.25
159 92 0.71
160 4 0.03
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.21
Consensus pattern (158 bp):
GACCAAGGGTTGCGGCAGCAGGACAGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGATTGTCG
CATTCTGCCTCTCCGACCGGCTAAGCGCCCGCACACCCATTTCGTGAGTTGGCTTAGGCATAAGG
AGTTCATTCCATGCCTAAGCCCCAACCG
Found at i:11090264 original size:26 final size:26
Alignment explanation
Indices: 11090235--11090287 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11090225 GTTGACTTAG
11090235 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
11090261 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11090287 G
1 G
11090288 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11090448 original size:26 final size:26
Alignment explanation
Indices: 11090418--11090470 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11090408 GTTGGCTTAG
*
11090418 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
11090444 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11090470 G
1 G
11090471 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11090822 original size:26 final size:26
Alignment explanation
Indices: 11090792--11090844 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11090782 GTTGACCTAG
11090792 GCATACGAAGTTCATCCCCACTCTAA
1 GCATACGAAGTTCATCCCCACTCTAA
* * * *
11090818 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCACTCTAA
11090844 G
1 G
11090845 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCACTCTAA
Found at i:11091870 original size:26 final size:26
Alignment explanation
Indices: 11091820--11091872 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11091810 GTTGACTTAG
*
11091820 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
11091846 GCATACGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCTAATCTAA
11091872 G
1 G
11091873 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:11092230 original size:156 final size:157
Alignment explanation
Indices: 11091983--11092345 Score: 376
Period size: 158 Copynumber: 2.3 Consensus size: 157
11091973 CCCGCCCACC
* * * * *
11091983 CGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACTGGACCGAGGT
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAACTGGACCAAGGG
* ** * * ***
11092048 TTGTGGTAGTGGGACTAACAGCATGCA-GAGGATCG-GTCCGATCCTTGGCTTGCGCATTATGCC
66 TTATGGTAGCAGGACTAACAGCATGCAGGAGGACCGAGTCAG-TCCCCAGCTTGCGCATTATGCC
* * * * *
11092111 TCTCCGGTCGGCTCAGCGCTCGAACGCA
130 TCTCCAGCCGACTCAGCACCCGAACGCA
* * *
11092139 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGATCAAG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCA-ACTGGACCAAG
* * * * * *
11092202 GGTTATGGTAGCAGGA-TCGACTGTATGCAGGGGGGACCGAGTCAGTCCCCAGCTTGTGCATTCT
64 GGTTATGGTAGCAGGACT-AACAGCATGCA-GGAGGACCGAGTCAGTCCCCAGCTTGCGCATTAT
* * *
11092266 GCCTCTCCAGCCGACTGAGCACCCGCACGCT
127 GCCTCTCCAGCCGACTCAGCACCCGAACGCA
11092297 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
11092346 TATGGAGTTC
Statistics
Matches: 168, Mismatches: 31, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
155 3 0.02
156 69 0.41
157 6 0.04
158 85 0.51
159 5 0.03
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (157 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAACTGGACCAAGGG
TTATGGTAGCAGGACTAACAGCATGCAGGAGGACCGAGTCAGTCCCCAGCTTGCGCATTATGCCT
CTCCAGCCGACTCAGCACCCGAACGCA
Found at i:11092319 original size:158 final size:157
Alignment explanation
Indices: 11091846--11092343 Score: 479
Period size: 156 Copynumber: 3.2 Consensus size: 157
11091836 CCTAGTCTAA
* * * *
11091846 GCATACGGAGTTCATTCCCA-ATCTAAGATCAGACCGGATCGAGGGTTGCGGTAGTAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACTGGATCGAGGGTTGTGGTAGTAGGATCGAC
* * * * * * *
11091910 AGCACGCAAGGGGGACC-AGGCGGTCTCCGGCTTGCGCATTCTGCCTCTTCGGATGGCTGAGTGC
65 AGCATGC-AGGGGGACCGAGTCAGTCCCCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGCGC
* * * *
11091974 CCGCCCACCCGTTTTGTGGGTTGGCTTAG
129 CCGCACGCACGTTTCGTGGGTTGGCTTAG
* ** * * * *
11092003 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACTGGACCGAGGTTTGTGGTAGTGGGA-CTAA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACTGGATCGAGGGTTGTGGTAGTAGGATC-GA
* * * ** * * *
11092066 CAGCATGCA-GAGGATCG-GTCCGATCCTTGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCG
64 CAGCATGCAGGGGGACCGAGTCAG-TCCCCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGCG
* * *
11092129 CTCGAACGCACGTTTCGTGGGTTGACTTAG
128 CCCGCACGCACGTTTCGTGGGTTGGCTTAG
* * *
11092159 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACTGGATCAAGGGTTATGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACTGGATCGAGGGTTGTGGTAGTAGGATCGAC
* * * * * * * *
11092223 TGTATGCAGGGGGGACCGAGTCAGTCCCCAGCTTGTGCATTCTGCCTCTCCAGCCGACTGAGCAC
65 AGCATGCA-GGGGGACCGAGTCAGTCCCCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGCGC
*
11092288 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCACGTTTCGTGGGTTGGCTTAG
11092317 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
11092344 CATATGGAGT
Statistics
Matches: 268, Mismatches: 61, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
155 10 0.04
156 110 0.41
157 57 0.21
158 87 0.32
159 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACTGGATCGAGGGTTGTGGTAGTAGGATCGACA
GCATGCAGGGGGACCGAGTCAGTCCCCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGCGCCC
GCACGCACGTTTCGTGGGTTGGCTTAG
Found at i:11092353 original size:26 final size:26
Alignment explanation
Indices: 11092317--11092369 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11092307 GTTGGCTTAG
11092317 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
11092343 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11092369 G
1 G
11092370 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11092892 original size:26 final size:26
Alignment explanation
Indices: 11092862--11092914 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11092852 GTTGACTTAG
*
11092862 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
11092888 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11092914 G
1 G
11092915 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11093444 original size:159 final size:158
Alignment explanation
Indices: 11092949--11093404 Score: 515
Period size: 159 Copynumber: 2.9 Consensus size: 158
11092939 TGCGGCATTT
* * * * *
11092949 GGATCGGCGGCACGCA-GGGGGGACGGGGTCGAT-CCTCAGCTTGCGCATTTTGCCTCTCC-GAC
1 GGATCGACAGCACGCAGGGGGGGACCGGGTCGATCCCTGA-CTTGCGCATTATGCCTCTCCGGAC
* * *
11093011 GGCTAAGCCCCGCACGCCCGTTTCGTGGTTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
65 GGCTAAGCCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCAAGTCTAAG
*
11093076 CCCCAGCCGAACCGAGGGTTGTGGTAGCA
130 CCCCAGCCGGACCGAGGGTTGTGGTAGCA
* * * * * *
11093105 GGATCGACAGCACGCAGAGGTGGACCGGGCCGATCCCTGTCTTGCGCATTATGCCTCTACGGTCG
1 GGATCGACAGCACGCAGGGGGGGACCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCGGACG
* * * * * * * * *
11093170 GCTCAGCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCACTCCCAGTCTATG
66 GCTAAGC-CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCAAGTCTAAG
*** * *
11093235 -ATTAGACCAGACCGAGGGTTGCGGTAGCA
130 CCCCAG-CCGGACCGAGGGTTGTGGTAGCA
* * * * * *
11093264 GGATCGATAGCACGCAGGGGGGGACCGGGTCAATCCCTGACTTGCGCATTCTACCTATCCGGCCG
1 GGATCGACAGCACGCAGGGGGGGACCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCGGACG
* *
11093329 GCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCAAGTCTAAG
66 GCTAAGC-CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCAAGTCTAAG
11093394 CCCCAGCCGGA
130 CCCCAGCCGGA
11093405 TCAAGGATTG
Statistics
Matches: 240, Mismatches: 54, Indels: 9
0.79 0.18 0.03
Matches are distributed among these distances:
156 14 0.06
157 31 0.13
158 14 0.06
159 179 0.75
160 2 0.01
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.21
Consensus pattern (158 bp):
GGATCGACAGCACGCAGGGGGGGACCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCGGACG
GCTAAGCCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCAAGTCTAAGC
CCCAGCCGGACCGAGGGTTGTGGTAGCA
Found at i:11093574 original size:26 final size:26
Alignment explanation
Indices: 11093538--11093590 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11093528 GTTGACTTAG
*
11093538 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
11093564 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
11093590 G
1 G
11093591 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:11093910 original size:26 final size:26
Alignment explanation
Indices: 11093881--11093933 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11093871 GTTGGCTTAG
*
11093881 GCATACAGCGTTCATTCCAC-GTCTAA
1 GCATACAGAGTTCATTCC-CGGTCTAA
11093907 GCATACAGAGTTCATTCCCGGTCTAA
1 GCATACAGAGTTCATTCCCGGTCTAA
11093933 G
1 G
11093934 AGTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCGGTCTAA
Found at i:11094633 original size:26 final size:26
Alignment explanation
Indices: 11094604--11094656 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11094594 GTTGACTTAG
11094604 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
11094630 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
11094656 G
1 G
11094657 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:11095122 original size:26 final size:26
Alignment explanation
Indices: 11095092--11095144 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11095082 GTTGGCTTAG
11095092 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
11095118 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11095144 G
1 G
11095145 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11095787 original size:11 final size:11
Alignment explanation
Indices: 11095767--11095799 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
11095757 CCCAGGGCAC
11095767 CATCGCCGGAG
1 CATCGCCGGAG
*
11095778 CATCGTCGGAG
1 CATCGCCGGAG
11095789 CATCGCCGGAG
1 CATCGCCGGAG
11095800 AGCCTAACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.33, G:0.36, T:0.12
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:11096924 original size:159 final size:156
Alignment explanation
Indices: 11096510--11097063 Score: 519
Period size: 159 Copynumber: 3.5 Consensus size: 156
11096500 TCACCGACCG
* * ** * *
11096510 GCCTCTTCGGCCAGCTGAGCACCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTTCGGACGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
* * *
11096575 TTCCCAGTCTAAGATCGGATCAGACCGAGGCTTACGGTAGCATGATCGGCAGCACGT-AGGGGGA
66 TTCCCAGTCTAAGATCAGATCAGACCAAGG-TTGCGGTAGCA-GATCGGCAGCACGTAAGGGGGA
* * * *
11096639 CCGGGCCAATCCCCGACATGCGCATTCT
129 CCGGGCCGATCCCCGGCTTGCGCATTAT
* * * * *
11096667 GCCTC-TCCGACTGGCTGAGTGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTC
1 GCCTCTTCGGAC-GGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
** * * * *
11096731 ATT-CCATGTCTAAGCCCCAG--CCGAACCGAGGGTTGTGGTAGCGAGACCGGCAGCACGTAAAG
65 ATTCCCA-GTCTAAG-ATCAGATCAG-ACC-AAGGTTGCGGTAGC-AGATCGGCAGCACGT-AAG
*
11096793 GGGGACCGGGCTGATCCCCGGCTTGCGCATTAT
124 GGGGACCGGGCCGATCCCCGGCTTGCGCATTAT
* * * * * * * * *
11096826 GCCTCTTCGGTCGACTCAATGCCCGCACGCTCATTTCATGGGTAGTCTTATGCATACAGAGTTCA
1 GCCTCTTCGGACGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
* *
11096891 TTCCCAGTCTAAGATCAGATCAGACCAAAGGTTGCGGTAGCAAGATCGACAGCACGTAGGGGGGA
66 TTCCCAGTCTAAGATCAGATCAGACC-AAGGTTGCGGTAGC-AGATCGGCAGCACGTAAGGGGGA
* * ** *
11096956 CCGGACCGATCCCCAGCTTATGCATTTT
129 CCGGGCCGATCCCCGGCTTGCGCATTAT
* * * * * *
11096984 ACCTC-TCCGACCGGTTGAGCGCCCGCACTCTCGTTTCGTGGGTTGGCTTCA-GCATACGGAGTT
1 GCCTCTTCGGA-CGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTT-AGGCATACGGAGTT
11097047 CATTCCCAGTCTAAGAT
64 CATTCCCAGTCTAAGAT
11097064 TTTGAGCCAC
Statistics
Matches: 314, Mismatches: 69, Indels: 27
0.77 0.17 0.07
Matches are distributed among these distances:
156 9 0.03
157 85 0.27
158 97 0.31
159 114 0.36
160 9 0.03
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (156 bp):
GCCTCTTCGGACGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGATCAGACCAAGGTTGCGGTAGCAGATCGGCAGCACGTAAGGGGGACC
GGGCCGATCCCCGGCTTGCGCATTAT
Found at i:11097881 original size:27 final size:27
Alignment explanation
Indices: 11097851--11097947 Score: 77
Period size: 27 Copynumber: 3.4 Consensus size: 27
11097841 TTTATGCAGG
11097851 AAAAATTGATACTTTCAACTTTTCCTC
1 AAAAATTGATACTTTCAACTTTTCCTC
** * * ** *
11097878 AAAAATTGATTTTTTTGAAAATTTATTTTTA
1 AAAAATTGA-TACTTT--CAACTT-TTCCTC
11097909 AGGAAAATTGATACTTTCAACTTTTCCTC
1 A--AAAATTGATACTTTCAACTTTTCCTC
11097938 AAAAATTGAT
1 AAAAATTGAT
11097948 TTTTTTGAAA
Statistics
Matches: 50, Mismatches: 14, Indels: 12
0.66 0.18 0.16
Matches are distributed among these distances:
27 18 0.36
28 4 0.08
29 4 0.08
30 8 0.16
31 4 0.08
32 4 0.08
33 8 0.16
ACGTcount: A:0.37, C:0.12, G:0.07, T:0.43
Consensus pattern (27 bp):
AAAAATTGATACTTTCAACTTTTCCTC
Found at i:11098037 original size:58 final size:58
Alignment explanation
Indices: 11097852--11098127 Score: 439
Period size: 60 Copynumber: 4.7 Consensus size: 58
11097842 TTATGCAGGA
11097852 AAAATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAA-T-ATTTTTTTGAAAATTTATTTTTAAGG
11097912 AAAATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAA-T-ATTTTTTTGAAAATTTATTTTTAAGG
* * *
11097972 AAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTGGAAACTTTTATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAA-ATTTATTTTTAAGG
**
11098030 AAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTTTAAGG
11098088 AAAATTGATACTTTCAACTTTTCC-CAAAAATATTCTTTTT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATT-TTTTT
11098128 TATTTTTATT
Statistics
Matches: 203, Mismatches: 10, Indels: 8
0.92 0.05 0.04
Matches are distributed among these distances:
57 19 0.09
58 78 0.38
59 22 0.11
60 84 0.41
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.45
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTTTAAGG
Found at i:11098102 original size:116 final size:116
Alignment explanation
Indices: 11097852--11098126 Score: 444
Period size: 116 Copynumber: 2.3 Consensus size: 116
11097842 TTATGCAGGA
* *
11097852 AAAATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCC-CAAAAA-T-ATTTTTTGGAAAATTTATTTTCAAGGAAAAT
*
11097917 TGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGG
63 TGATACTTTCAACTTTTCCTCAAAAA-TCATTTTTTTGAAAATTTATTTTTAAGG
*
11097972 AAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTGGAAACTTTTATTTTCAAGGAAAATTG
1 AAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTGGAAA-ATTTATTTTCAAGGAAAATTG
*
11098037 ATACTTTCAACTTTTCCTCAAAAA-CCTTTTTTTGAAAATTTATTTTTAAGG
65 ATACTTTCAACTTTTCCTCAAAAATCATTTTTTTGAAAATTTATTTTTAAGG
11098088 AAAATTGATACTTTCAACTTTTCCCAAAAATATTCTTTT
1 AAAATTGATACTTTCAACTTTTCCCAAAAATATT-TTTT
11098127 TTATTTTTAT
Statistics
Matches: 148, Mismatches: 5, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
116 59 0.40
117 15 0.10
118 44 0.30
119 6 0.04
120 24 0.16
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.45
Consensus pattern (116 bp):
AAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTGGAAAATTTATTTTCAAGGAAAATTGA
TACTTTCAACTTTTCCTCAAAAATCATTTTTTTGAAAATTTATTTTTAAGG
Found at i:11098177 original size:30 final size:30
Alignment explanation
Indices: 11098142--11098198 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
11098132 TTTATTTAAA
*
11098142 GAAAATAAAATAATAAAACAAAATAAAAGT
1 GAAAATAAAAAAATAAAACAAAATAAAAGT
*
11098172 GAAAATAAAAAAATAAAATAAAATAAA
1 GAAAATAAAAAAATAAAACAAAATAAA
11098199 GAAAGTAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (30 bp):
GAAAATAAAAAAATAAAACAAAATAAAAGT
Found at i:11098194 original size:18 final size:18
Alignment explanation
Indices: 11098138--11098230 Score: 82
Period size: 18 Copynumber: 4.9 Consensus size: 18
11098128 TATTTTTATT
11098138 TAAAGAAAATAAAATAATAA
1 TAAA-AAAATAAAATAA-AA
*
11098158 -AACAAAATAAAAGTGAAAA
1 TAAAAAAATAAAA-T-AAAA
11098177 TAAAAAAATAAAATAAAA
1 TAAAAAAATAAAATAAAA
* * *
11098195 TAAAGAAAGTAAAACCAAGA
1 TAAA-AAAATAAAA-TAAAA
11098215 T-AAAAAATAAAATAAA
1 TAAAAAAATAAAATAAA
11098231 GGTAAAAAGG
Statistics
Matches: 60, Mismatches: 8, Indels: 13
0.74 0.10 0.16
Matches are distributed among these distances:
17 2 0.03
18 25 0.42
19 16 0.27
20 17 0.28
ACGTcount: A:0.75, C:0.03, G:0.06, T:0.15
Consensus pattern (18 bp):
TAAAAAAATAAAATAAAA
Found at i:11098228 original size:5 final size:5
Alignment explanation
Indices: 11098143--11098198 Score: 57
Period size: 5 Copynumber: 11.6 Consensus size: 5
11098133 TTATTTAAAG
*
11098143 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT -AAA- AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAAAT AAAAT
11098191 AAAAT AAA
1 AAAAT AAA
11098199 GAAAGTAAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
3 3 0.07
4 6 0.14
5 28 0.65
6 2 0.05
7 4 0.09
ACGTcount: A:0.79, C:0.02, G:0.04, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:11098243 original size:27 final size:29
Alignment explanation
Indices: 11098151--11098237 Score: 70
Period size: 32 Copynumber: 2.9 Consensus size: 29
11098141 AGAAAATAAA
* * *
11098151 ATAATAAAACAAAATAAA-AGTGAAAATAAA
1 ATAA-AAAATAAAATAAAGAGT-AAAACAAG
*
11098181 AAAATAAAATAAAATAAAGAAAGTAAAACCAAG
1 ATAA-AAAATAAAATAAAG--AGTAAAA-CAAG
11098214 ATAAAAAATAAAATAAAG-GTAAAA
1 ATAAAAAATAAAATAAAGAGTAAAA
11098238 AGGATACTAA
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
29 6 0.12
30 16 0.33
32 18 0.38
33 8 0.17
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.15
Consensus pattern (29 bp):
ATAAAAAATAAAATAAAGAGTAAAACAAG
Found at i:11098300 original size:19 final size:19
Alignment explanation
Indices: 11098268--11098304 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
11098258 TCTAATAATA
* *
11098268 AATAATAAATAAAAAAAAT
1 AATAAAAAAAAAAAAAAAT
11098287 AATAAAAAAAAAAAAAAA
1 AATAAAAAAAAAAAAAAA
11098305 CCTGGAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (19 bp):
AATAAAAAAAAAAAAAAAT
Found at i:11098301 original size:16 final size:16
Alignment explanation
Indices: 11098267--11098301 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
11098257 ATCTAATAAT
*
11098267 AAATAATAAATAAAAA
1 AAATAATAAAAAAAAA
11098283 AAATAATAAAAAAAAA
1 AAATAATAAAAAAAAA
11098299 AAA
1 AAA
11098302 AAACCTGGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (16 bp):
AAATAATAAAAAAAAA
Found at i:11101125 original size:8 final size:8
Alignment explanation
Indices: 11101112--11101208 Score: 70
Period size: 8 Copynumber: 11.6 Consensus size: 8
11101102 CTATGCTTGA
11101112 AAAAAATG
1 AAAAAATG
*
11101120 AAAAAAAG
1 AAAAAATG
11101128 AAAAAAATG
1 -AAAAAATG
** *
11101137 ATGAAATAA
1 AAAAAAT-G
*
11101146 AAAAAAGAG
1 AAAAAA-TG
11101155 AAAAAATG
1 AAAAAATG
*
11101163 AAAAAAATAA
1 -AAAAAAT-G
*
11101173 AAAAAATA
1 AAAAAATG
11101181 AAAAAATG
1 AAAAAATG
11101189 AAAAAA-G
1 AAAAAATG
*
11101196 AAAAAGTG
1 AAAAAATG
11101204 AAAAA
1 AAAAA
11101209 GGAGGACTCA
Statistics
Matches: 70, Mismatches: 13, Indels: 12
0.74 0.14 0.13
Matches are distributed among these distances:
7 6 0.09
8 33 0.47
9 31 0.44
ACGTcount: A:0.79, C:0.00, G:0.11, T:0.09
Consensus pattern (8 bp):
AAAAAATG
Found at i:11101130 original size:17 final size:17
Alignment explanation
Indices: 11101110--11101200 Score: 98
Period size: 17 Copynumber: 5.4 Consensus size: 17
11101100 TACTATGCTT
11101110 GAAAAAAATGAAAAAAA
1 GAAAAAAATGAAAAAAA
11101127 GAAAAAAATGATGAAATAAA
1 GAAAAAAATGA--AAA-AAA
* *
11101147 -AAAAAGA-GAAAAAAT
1 GAAAAAAATGAAAAAAA
*
11101162 GAAAAAAATAAAAAAAA
1 GAAAAAAATGAAAAAAA
*
11101179 TAAAAAAATG-AAAAAA
1 GAAAAAAATGAAAAAAA
11101195 GAAAAA
1 GAAAAA
11101201 GTGAAAAAGG
Statistics
Matches: 61, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
15 2 0.03
16 20 0.33
17 25 0.41
18 2 0.03
19 9 0.15
20 3 0.05
ACGTcount: A:0.80, C:0.00, G:0.11, T:0.09
Consensus pattern (17 bp):
GAAAAAAATGAAAAAAA
Found at i:11101158 original size:26 final size:25
Alignment explanation
Indices: 11101112--11101200 Score: 115
Period size: 25 Copynumber: 3.5 Consensus size: 25
11101102 CTATGCTTGA
*
11101112 AAAAAATGAAAAAAAGAAAAAAATG
1 AAAAAATAAAAAAAAGAAAAAAATG
**
11101137 ATGAAATAAAAAAAAGAGAAAAAATG
1 AAAAAATAAAAAAAAGA-AAAAAATG
*
11101163 AAAAAAATAAAAAAAATAAAAAAATG
1 -AAAAAATAAAAAAAAGAAAAAAATG
*
11101189 AAAAAAGAAAAA
1 AAAAAATAAAAA
11101201 GTGAAAAAGG
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
25 25 0.45
26 16 0.29
27 14 0.25
ACGTcount: A:0.81, C:0.00, G:0.10, T:0.09
Consensus pattern (25 bp):
AAAAAATAAAAAAAAGAAAAAAATG
Found at i:11101158 original size:27 final size:27
Alignment explanation
Indices: 11101110--11101194 Score: 59
Period size: 26 Copynumber: 3.3 Consensus size: 27
11101100 TACTATGCTT
* *
11101110 GAAAAAAATGAAAAAAA-GAAAAAAAT
1 GAAAAAAATGAAAAAAATAAAAAAAAA
** * * * *
11101136 G-ATGAAATAAAAAAAAGAGAAAAAAT
1 GAAAAAAATGAAAAAAATAAAAAAAAA
* *
11101162 GAAAAAAATAAAAAAAAT-AAAAAAAT
1 GAAAAAAATGAAAAAAATAAAAAAAAA
11101188 GAAAAAA
1 GAAAAAA
11101195 GAAAAAGTGA
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
25 12 0.25
26 23 0.48
27 13 0.27
ACGTcount: A:0.80, C:0.00, G:0.11, T:0.09
Consensus pattern (27 bp):
GAAAAAAATGAAAAAAATAAAAAAAAA
Found at i:11101208 original size:9 final size:9
Alignment explanation
Indices: 11101109--11101194 Score: 99
Period size: 9 Copynumber: 9.9 Consensus size: 9
11101099 ATACTATGCT
11101109 TGAAAAAAA
1 TGAAAAAAA
11101118 TGAAAAAAA
1 TGAAAAAAA
11101127 -GAAAAAAA
1 TGAAAAAAA
**
11101135 TG-ATGAAA
1 TGAAAAAAA
11101143 T-AAAAAAA
1 TGAAAAAAA
*
11101151 AGAGAAAAAA
1 TGA-AAAAAA
11101161 TGAAAAAAA
1 TGAAAAAAA
*
11101170 TAAAAAAAA
1 TGAAAAAAA
11101179 T-AAAAAAA
1 TGAAAAAAA
11101187 TGAAAAAA
1 TGAAAAAA
11101195 GAAAAAGTGA
Statistics
Matches: 65, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
8 25 0.38
9 32 0.49
10 8 0.12
ACGTcount: A:0.79, C:0.00, G:0.10, T:0.10
Consensus pattern (9 bp):
TGAAAAAAA
Found at i:11102291 original size:42 final size:41
Alignment explanation
Indices: 11102214--11102474 Score: 371
Period size: 42 Copynumber: 6.1 Consensus size: 41
11102204 ATGATTGTCA
11102214 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
11102255 AGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAG
11102297 AGGAGCAATTTAC-TTTCAAAGTCGTGGTGCCTCTGTTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTG-C-C---TCTGTTTAG
11102342 AGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAG
* * *
11102384 AGGAGCAATTTATTTTTCCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAG
* * *
11102426 AGGAGCAATTTATTTTTTTCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTA--CTTTTCAAAGTCGTGGTGCCTCTGTTTAG
11102469 AGGAGC
1 AGGAGC
11102475 TTTGGTTAAA
Statistics
Matches: 206, Mismatches: 3, Indels: 20
0.90 0.01 0.09
Matches are distributed among these distances:
40 12 0.06
41 23 0.11
42 95 0.46
43 31 0.15
44 5 0.02
45 23 0.11
46 5 0.02
47 12 0.06
ACGTcount: A:0.23, C:0.16, G:0.24, T:0.37
Consensus pattern (41 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:11102356 original size:87 final size:82
Alignment explanation
Indices: 11102214--11102474 Score: 371
Period size: 87 Copynumber: 3.1 Consensus size: 82
11102204 ATGATTGTCA
11102214 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGT
1 AGGAGCAATTTAC-TTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGT
11102279 CGTGGTGCCTCTGTTTAG
65 CGTGGTGCCTCTGTTTAG
11102297 AGGAGCAATTTACTTTCAAAGTCGTGGTGCCTCTGTTCTGTTTAGAGGAGCAATTTACTTTTCAA
1 AGGAGCAATTTACTTTCAAAGTCGTGGTG-C-C---TCTGTTTAGAGGAGCAATTTACTTTTCAA
11102362 AAGTCGTGGTGCCTCTGTTTAG
61 AAGTCGTGGTGCCTCTGTTTAG
* * * *
11102384 AGGAGCAATTTATTTTTCCAAAGTCGTTGAGCCTCTGTTTAGAGGAGCAATTTATTTTTTTC-AA
1 AGGAGCAATTTA-CTTT-CAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA--CTTTTCAAA
* *
11102448 AGTCGTTGAGCCTCTGTTTAG
62 AGTCGTGGTGCCTCTGTTTAG
11102469 AGGAGC
1 AGGAGC
11102475 TTTGGTTAAA
Statistics
Matches: 163, Mismatches: 6, Indels: 16
0.88 0.03 0.09
Matches are distributed among these distances:
82 16 0.10
83 14 0.09
84 22 0.13
85 27 0.17
86 5 0.03
87 64 0.39
88 4 0.02
89 11 0.07
ACGTcount: A:0.23, C:0.16, G:0.24, T:0.37
Consensus pattern (82 bp):
AGGAGCAATTTACTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTC
GTGGTGCCTCTGTTTAG
Found at i:11102531 original size:6 final size:6
Alignment explanation
Indices: 11102482--11102529 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
11102472 AGCTTTGGTT
* * * *
11102482 AAAAAA AAAAAC AAAAAC AAAAAC AAAAGC AAACAAA AAAAAT AAAAA
1 AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAA-AAC AAAAAC AAAAA
11102530 TATAAAAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
6 32 0.89
7 4 0.11
ACGTcount: A:0.85, C:0.10, G:0.02, T:0.02
Consensus pattern (6 bp):
AAAAAC
Found at i:11102726 original size:17 final size:16
Alignment explanation
Indices: 11102695--11102729 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
11102685 GTAAGTCCAA
*
11102695 TTTTATTTTTGTTATT
1 TTTTATTTTTATTATT
11102711 TTTTATTTTTTATTATT
1 TTTTA-TTTTTATTATT
11102728 TT
1 TT
11102730 ATTCTATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.14, C:0.00, G:0.03, T:0.83
Consensus pattern (16 bp):
TTTTATTTTTATTATT
Found at i:11102731 original size:22 final size:23
Alignment explanation
Indices: 11102695--11102741 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
11102685 GTAAGTCCAA
* * *
11102695 TTTTATTTTTGTTATTTTTTATT
1 TTTTATTATTGTTATTCTATATT
11102718 TTTTATTATT-TTATTCTATATT
1 TTTTATTATTGTTATTCTATATT
11102740 TT
1 TT
11102742 ATGTATATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (23 bp):
TTTTATTATTGTTATTCTATATT
Found at i:11102752 original size:13 final size:12
Alignment explanation
Indices: 11102714--11102754 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 12
11102704 TGTTATTTTT
11102714 TATTTT-TTAT-
1 TATTTTATTATA
*
11102724 TATTTTATTCTA
1 TATTTTATTATA
11102736 TATTTTATGTATA
1 TATTTTAT-TATA
11102749 TATTTT
1 TATTTT
11102755 CCTTTATATC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
10 6 0.23
11 3 0.12
12 8 0.31
13 9 0.35
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (12 bp):
TATTTTATTATA
Found at i:11102796 original size:28 final size:28
Alignment explanation
Indices: 11102765--11102819 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
11102755 CCTTTATATC
* *
11102765 CTATGTATTTAT-TATTTATTTATTATTA
1 CTATGTATTAATATATATATTT-TTATTA
*
11102793 CTATTTATTAATATATATATTTTTATT
1 CTATGTATTAATATATATATTTTTATT
11102820 TTATATTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 15 0.65
29 8 0.35
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.64
Consensus pattern (28 bp):
CTATGTATTAATATATATATTTTTATTA
Found at i:11102884 original size:52 final size:51
Alignment explanation
Indices: 11102777--11102884 Score: 121
Period size: 52 Copynumber: 2.1 Consensus size: 51
11102767 ATGTATTTAT
* * *
11102777 TATTTATTTATTATTACTATTTATTAATATATATATTTTTATTTTATATTT
1 TATTTATTTATTATTACTATTTATTAATATATATATTGTTATTATATATTA
* **
11102828 TATTTATTTTTGTATTTTTATTTATCTAAT-TATATATCTGTTATTAT-TATTA
1 TATTTATTTAT-TATTACTATTTAT-TAATATATATAT-TGTTATTATATATTA
11102880 TATTT
1 TATTT
11102885 TTATTTATCC
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
51 10 0.21
52 27 0.56
53 11 0.23
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.67
Consensus pattern (51 bp):
TATTTATTTATTATTACTATTTATTAATATATATATTGTTATTATATATTA
Found at i:11103870 original size:5 final size:5
Alignment explanation
Indices: 11103860--11103920 Score: 54
Period size: 5 Copynumber: 11.8 Consensus size: 5
11103850 GGTTTCTTTC
*
11103860 TTTAT TTTAT TTTA- TTT-T TTTAT TTTCACT TTTAT TTTGT TTTATT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT-A-T TTTAT TTTAT TTTA-T
*
11103906 ATTTAT TTTCT TTTA
1 -TTTAT TTTAT TTTA
11103921 AATAAAAATC
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
4 6 0.13
5 28 0.61
6 4 0.09
7 8 0.17
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (5 bp):
TTTAT
Found at i:11103994 original size:58 final size:58
Alignment explanation
Indices: 11103932--11104269 Score: 430
Period size: 58 Copynumber: 5.7 Consensus size: 58
11103922 ATAAAAATCA
* *
11103932 AAAAAGAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATTAAA-TTTC
1 AAAAA-AATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* * *
11103990 AAAAAAGGGTTTTTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTTC
1 AAAAAA--ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTTC
** * *
11104051 -AAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAGTTTCC
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-TTTTC
*
11104110 AAAAAAATATTTTTGGGGGAAAAGTTGAAAGTATTCAATTTTCCTTAAAAATAAATTTTTC
1 AAAAAAATATTTTT-GAGGAAAAGTTGAAAGTA-TCAATTTTCCTTAAAAATAAA-TTTTC
* * *
11104171 AAAAAAATCAATTTTGGGGAAAAGTTAAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAAT-ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*
11104230 -AAAAAATCAATTTTGAGGAAAAGTTGAAAGTATCAATTTT
1 AAAAAAAT-ATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
11104270 TCCTGCATAA
Statistics
Matches: 249, Mismatches: 22, Indels: 18
0.86 0.08 0.06
Matches are distributed among these distances:
57 1 0.00
58 82 0.33
59 54 0.22
60 37 0.15
61 53 0.21
62 22 0.09
ACGTcount: A:0.44, C:0.07, G:0.14, T:0.36
Consensus pattern (58 bp):
AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:11104246 original size:180 final size:177
Alignment explanation
Indices: 11103932--11104269 Score: 502
Period size: 180 Copynumber: 1.9 Consensus size: 177
11103922 ATAAAAATCA
*
11103932 AAAAAGAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATTAAATTTCAAAAAAG
1 AAAAAGAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCAAAAAA-
* ** * * ***
11103997 GGTTTTTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTTCAAAAAAGGTTT
65 GATAATTTTGAGGAAAAGTTAAAAGTATCAATTTTCCTTAAAAATAAATTTTTCAAAAAACAATT
11104062 TTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAGTTTCC
130 TTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAGTTTCC
11104110 AAAAA-AATATTTTTGGGGGAAAAGTTGAAAGTATTCAATTTTCCTTAAAAATAAATTTTTCAAA
1 AAAAAGAATATTTTT-GGGGAAAAGTTGAAAGTA-TCAATTTTCCTTAAAAATAAA--TTTCAAA
*
11104174 AAA-ATCAATTTTGGGGAAAAGTTAAAAGTATCAATTTTCCTTAAAAATAAA-TTTTCAAAAAAT
62 AAAGAT-AATTTTGAGGAAAAGTTAAAAGTATCAATTTTCCTTAAAAATAAATTTTTCAAAAAA-
11104237 CAATTTTGAGGAAAAGTTGAAAGTATCAATTTT
125 CAATTTTGAGGAAAAGTTGAAAGTATCAATTTT
11104270 TCCTGCATAA
Statistics
Matches: 144, Mismatches: 10, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
177 9 0.06
178 23 0.16
179 32 0.22
180 70 0.49
181 10 0.07
ACGTcount: A:0.44, C:0.07, G:0.14, T:0.36
Consensus pattern (177 bp):
AAAAAGAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCAAAAAAG
ATAATTTTGAGGAAAAGTTAAAAGTATCAATTTTCCTTAAAAATAAATTTTTCAAAAAACAATTT
TGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAGTTTCC
Found at i:11105565 original size:158 final size:156
Alignment explanation
Indices: 11105057--11105590 Score: 493
Period size: 158 Copynumber: 3.4 Consensus size: 156
11105047 GTGGCTCAAA
* * * * *
11105057 ATCTTAGACTGGGAATGAACTTCGTATGCCGAAGCCAACCCACGAAACGAGAGTGCAGGCGCTCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGCGGGCACTCA
* * * *
11105122 ACCGATCGGAGAGGCAAAATGCGTAAGCTGGGGATCGGCCTGGTCCCCCCTACGTGCTGTCGATC
66 GCCG-TCGGAAAGGCAAAATGCGTAA-CCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATC
* *
11105187 TTGCTACCGCAACCCTTGGTCTGATCTG
129 CTGCTACCGCAACCCTCGGTCTGATCTG
* * * * * * *
11105215 ATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCTACCCACGAAATGAGCGTGCGGGCATTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGCGGGCACTCA
* * * * * * * *
11105280 GTCGACCGAAGAGGCATAATGCGTAAGCCAGGGATCAGCCCGGTCCCCCTCTACGTGCTGCCGGT
66 GCCGTCGGAA-AGGCAAAATGCGTAA-CCGGGGATCGGCCCGGTCCCCC-CTACGTGCTGTCGAT
* * *
11105345 -CTCGCTGCCACAACCCTCGGT-TCG-GCTGG
128 CCT-GCTACCGCAACCCTCGGTCT-GATCT-G
** * * *
11105374 GGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCACTC
1 ATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGCGGGCACTC
* * * *
11105438 AGCCAGTCGGAAAGGCAGAATACGCATATCGGGGAAT-GGCCCGGTCCCCCCTACGTGCTGTCGA
65 AGCC-GTCGGAAAGGCAAAATGCGTA-ACCGGGG-ATCGGCCCGGTCCCCCCTACGTGCTGTCGA
* * * * *
11105502 TCCTACTACTGTAAGCCTCAGTCTGATCTG
127 TCCTGCTACCGCAACCCTCGGTCTGATCTG
* * ** *
11105532 ATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCGGG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGCGGG
11105591 TGCTCAGCTG
Statistics
Matches: 295, Mismatches: 68, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
157 4 0.01
158 166 0.56
159 116 0.39
160 9 0.03
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (156 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGCGGGCACTCA
GCCGTCGGAAAGGCAAAATGCGTAACCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCT
GCTACCGCAACCCTCGGTCTGATCTG
Found at i:11106342 original size:11 final size:11
Alignment explanation
Indices: 11106322--11106354 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
11106312 CGGTTAGGCT
11106322 CTCCGGCGATG
1 CTCCGGCGATG
*
11106333 CTCCGACGATG
1 CTCCGGCGATG
11106344 CTCCGGCGATG
1 CTCCGGCGATG
11106355 GTGCCCTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.12, C:0.36, G:0.33, T:0.18
Consensus pattern (11 bp):
CTCCGGCGATG
Found at i:11106808 original size:26 final size:26
Alignment explanation
Indices: 11106767--11106819 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11106757 TTGATCCGAT
*
11106767 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11106793 CTTAGACTAGGG-ATGAAGTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
11106819 C
1 C
11106820 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11107014 original size:26 final size:26
Alignment explanation
Indices: 11106976--11107028 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11106966 CCAGTCTAAT
11106976 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11107002 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
11107028 C
1 C
11107029 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11107500 original size:26 final size:26
Alignment explanation
Indices: 11107464--11107516 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11107454 CCGGTCTGAT
11107464 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
11107490 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11107516 C
1 C
11107517 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11108225 original size:26 final size:26
Alignment explanation
Indices: 11108187--11108239 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11108177 GGCTTAAACT
* *
11108187 CTTAGACCGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACGCTGTATG
*
11108213 CTTAGACATGGAATGAACGCTGTATG
1 CTTAGACAGGGAATGAACGCTGTATG
11108239 C
1 C
11108240 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACGCTGTATG
Found at i:11108559 original size:26 final size:26
Alignment explanation
Indices: 11108530--11108582 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11108520 CTGATCCGAT
11108530 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGGATGAACTCCGTATG
11108556 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGGATGAACTCCGTATG
11108582 C
1 C
11108583 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGGATGAACTCCGTATG
Found at i:11108962 original size:159 final size:157
Alignment explanation
Indices: 11108710--11109229 Score: 580
Period size: 159 Copynumber: 3.3 Consensus size: 157
11108700 CTGCCACAGT
** * * *
11108710 CCTCGGTCTGG-CTGGGGCTTAGACTTGGAATGAACTCCT-TATGCCTAAGCCAACCCATGAAAC
1 CCTCGGTCTGGTCT-GATCTTAGAATGGGAATGAACT-CTGTATGCCTAAGCCAACCCACGAAAC
* * *
11108773 GGGCGTGCGGGTGCTCAGTCGGTCGGAGAGGTAGAATGCGCAAGTCAGGGATCGACCCGGTCCTC
64 GAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAG-CAGGGATCGACCCGGTCC-C
*
11108838 CCCTGCGTGCTATCGATCCTGCTGCCGCAAC
127 CCCTGCGTGCTGTCGATCCTGCTGCCGCAAC
* * * * * *
11108869 CCTCGGTCTGGTCTGATCATAGATTGGGAGTGAACTTTGTATGCCTAAGTCAACCCACGAAATGA
1 CCTCGGTCTGGTCTGATCTTAGAATGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGA
* * * ** * * * * *
11108934 GTGTTCGGGTGCTGAGCCGACCGTAGAGGCATAATGCGCAAGACGGGGATCGGCCCGGTCCACCT
66 GCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAG-CAGGGATCGACCCGGTCC-CCC
*
11108999 CTGCGTGCTGTCGATCCTGCTGCCACAAC
129 CTGCGTGCTGTCGATCCTGCTGCCGCAAC
** **
11109028 CCTCGGTCTGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
1 CCTCGGTCTGGTCT-GATCTTAGA-ATGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAAC
* * *
11109091 GAGCGTGCGGGTGCTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCC
64 GAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCAG-GGATCGACCCGGTCCCC
*
11109156 CCTGCGTGCCGTCGATCCTGCTGCCGCAAC
128 CCTGCGTGCTGTCGATCCTGCTGCCGCAAC
* * * * *
11109186 CCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGC
1 CCTCGGTCTGGTCTGATCTTAGAATGGGAATGAACTCTGTATGC
11109230 TTAGACTGGG
Statistics
Matches: 294, Mismatches: 60, Indels: 15
0.80 0.16 0.04
Matches are distributed among these distances:
157 1 0.00
158 65 0.22
159 225 0.77
160 3 0.01
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.20
Consensus pattern (157 bp):
CCTCGGTCTGGTCTGATCTTAGAATGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGA
GCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCAGGGATCGACCCGGTCCCCCCT
GCGTGCTGTCGATCCTGCTGCCGCAAC
Found at i:11109239 original size:26 final size:26
Alignment explanation
Indices: 11109203--11109255 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11109193 CCGATCCGAT
*
11109203 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11109229 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11109255 C
1 C
11109256 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11109777 original size:26 final size:26
Alignment explanation
Indices: 11109748--11109800 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11109738 CCGGTCCAAT
11109748 CTTAGAC-TAGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
11109774 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
11109800 C
1 C
11109801 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:11110270 original size:157 final size:155
Alignment explanation
Indices: 11109774--11110270 Score: 447
Period size: 157 Copynumber: 3.2 Consensus size: 155
11109764 ACTCCATATG
* * *
11109774 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGTGCTCAAT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCGCTC-AG
** ** * * *
11109839 CGGT-CGGAGAGGCAGAATGCATAAGCCGGGGACCGGCTCGGTCCCCCTGCATACAGTCAATCCT
65 CCATCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGCCT-GGTCCCCCTGCATGCTGTC-ATCCT
* * *
11109903 GCTACCATAACCCT-TGATCCAGTCTGAT
128 ACTACCACAACCCTCAG-TCCAGTCTGAT
* * * * *
11109931 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAACGTG-CGTTCGAGCGCTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-GACGTGCGGGCGCTCA
* * * * * *
11109994 GCCGA-CCGGAGAGGCATAATGCGCAAGTCGAGGATCGGACC-GAT-CCTCTGCATGCTGTCAGT
64 GCC-ATCCGGAGAGGCAGAATGCGCAAGCCGGGGA-CCG-CCTGGTCCCCCTGCATGCTGTCA-T
* * * **
11110056 CCCACTGCCACAACCCTCGGTCCAGT-TGGGG
125 CCTACTACCACAACCCTCAGTCCAGTCT-GAT
* * * *
11110087 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGATGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCGCTCAGC
* * *
11110152 CATCCGAAGAGGCAGAATGCGCAAGCCGGGGACCGCCTGGTCCCCCTTGCGTGCTGTCGATCTTA
66 CATCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGCCTGGTCCCCC-TGCATGCTGTC-ATCCTA
*
11110217 CTACCGCAACCCTCAGTCC-GATCTGAT
129 CTACCACAACCCTCAGTCCAG-TCTGAT
*
11110244 CTTAGAC-TGGGAATGAACTCAGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
11110271 TTAGACTAGG
Statistics
Matches: 267, Mismatches: 54, Indels: 38
0.74 0.15 0.11
Matches are distributed among these distances:
154 2 0.01
155 8 0.03
156 119 0.45
157 133 0.50
158 4 0.01
159 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCGCTCAGC
CATCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGCCTGGTCCCCCTGCATGCTGTCATCCTACT
ACCACAACCCTCAGTCCAGTCTGAT
Found at i:11110285 original size:26 final size:26
Alignment explanation
Indices: 11110244--11110296 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11110234 CCGATCTGAT
11110244 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
11110270 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCAGTATG
11110296 C
1 C
11110297 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:11110652 original size:26 final size:26
Alignment explanation
Indices: 11110623--11110674 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11110613 TCCGATCAAA
11110623 TCTTAGAC-TGGAAATGAACTCCGTAT
1 TCTTAGACATGG-AATGAACTCCGTAT
11110649 TCTTAGACATGGAATGAACTCCGTAT
1 TCTTAGACATGGAATGAACTCCGTAT
11110675 GCCTAAGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (26 bp):
TCTTAGACATGGAATGAACTCCGTAT
Found at i:11111373 original size:26 final size:26
Alignment explanation
Indices: 11111322--11111374 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
11111312 CCGATCCGTT
* *
11111322 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATAAACTCCATATG
*
11111348 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCATATG
11111374 C
1 C
11111375 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:11111440 original size:196 final size:196
Alignment explanation
Indices: 11111125--11111477 Score: 480
Period size: 196 Copynumber: 1.8 Consensus size: 196
11111115 TCCAGTTAGA
* * * * *
11111125 TCTTAGACTAGGAATGAACTCCGTACGCTTAGATTAGAGATGAACTCTGTATGCCTAAGTCAACC
1 TCTTAGACTAGGAATGAACTCCATACGCTTAGAATAGAGATAAACTCCGTATGCCTAAGCCAACC
* * *
11111190 CACGAAACGAGCATGTGGGTGCTCAGCCGACTGGAGAGGCAGAATACGTAAGCTGGGGATCGA-C
66 CACGAAACGAGCATGCGGGCGCTCAGCCGACTGGAGAGGCAAAATACGTAAGCTGGGGATCGACC
* *
11111254 CCAGTCCCCCTTGCGTGCTGTCGATCCTGTTGCTGCTCCTGCTACCATAACCCTCGATCCGATCC
131 CCA-TCCCCCCTACGTGCTGTCGATCCTGTTGCTGCTCCTGCTACCATAACCCTCGATCCGATCC
11111319 GT
195 GT
* * * *
11111321 TCTTAGACTGGGAATGAACTTCATATGCTTAGACATGGA-ATAAACTCCGTATGCCTAAGCCAAC
1 TCTTAGACTAGGAATGAACTCCATACGCTTAGA-ATAGAGATAAACTCCGTATGCCTAAGCCAAC
* * * *
11111385 CCATGAAACGAG-AGTGCGGGCGCTCAGTCG-GTCGGAGAGGCAAAATGCGTAAGCTGGGGATCG
65 CCACGAAACGAGCA-TGCGGGCGCTCAGCCGACT-GGAGAGGCAAAATACGTAAGCTGGGGATCG
11111448 ACCCCATCCCCCCTACGTGCTGTCGATCCT
128 ACCCCATCCCCCCTACGTGCTGTCGATCCT
11111478 CCTGCCGCAA
Statistics
Matches: 135, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
195 2 0.01
196 126 0.93
197 7 0.05
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.22
Consensus pattern (196 bp):
TCTTAGACTAGGAATGAACTCCATACGCTTAGAATAGAGATAAACTCCGTATGCCTAAGCCAACC
CACGAAACGAGCATGCGGGCGCTCAGCCGACTGGAGAGGCAAAATACGTAAGCTGGGGATCGACC
CCATCCCCCCTACGTGCTGTCGATCCTGTTGCTGCTCCTGCTACCATAACCCTCGATCCGATCCG
T
Found at i:11111607 original size:158 final size:158
Alignment explanation
Indices: 11111348--11111849 Score: 593
Period size: 158 Copynumber: 3.2 Consensus size: 158
11111338 ACTTCATATG
* * *
11111348 CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * *
11111413 CGGTCGGAGAGGCAAAATGCGTAAGCTGGGGATCGACCCCATCCCCCCTACGTGCTGTCGATCCT
66 CGGTCGGAGAGGCAAAATGCGCAAGC-GGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
11111478 CCTGCCGCAACCCTCGGTCCGATCT-GAT
130 CCTGCCGCAACCCTCGGTCCGATCTGGAT
* * * * * * * *
11111506 CTTAGAC-TGGGAATGAACTTCGTATGCTTAAGTCAACCCACGAAATGAGCGTTCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * ** *
11111570 CCGGTCGGAGAGGCATAATGCGCAAGTCAGGGATCGACCCGGTCCCCCTCTGCGTGCTACCGGTC
65 CCGGTCGGAGAGGCAAAATGCGCAAG-CGGGGATCGACCCGATCCCCC-CTGCGTGCTGTCGATC
* * **
11111635 CTCCTACCACAACCCTCGGTCC-AGT-TGGGG
128 CTCCTGCCGCAACCCTCGGTCCGA-TCTGGAT
* *
11111665 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * *
11111730 AGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGAT-CCCCCTGCGTGCTGTCGATCCT
66 CGGTCGGAGAGGCAAAATGCGCAAG-CGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
* * * *
11111794 GCTGCCGCAACCTTCGGTCTGGTCTGGAT
130 CCTGCCGCAACCCTCGGTCCGATCTGGAT
11111823 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
11111850 TTAGACTGGG
Statistics
Matches: 282, Mismatches: 53, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
157 33 0.12
158 125 0.44
159 123 0.44
160 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAAAATGCGCAAGCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTC
CTGCCGCAACCCTCGGTCCGATCTGGAT
Found at i:11111859 original size:26 final size:26
Alignment explanation
Indices: 11111823--11111875 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11111813 TGGTCTGGAT
*
11111823 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11111849 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11111875 C
1 C
11111876 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11111948 original size:697 final size:699
Alignment explanation
Indices: 11110475--11111949 Score: 1835
Period size: 697 Copynumber: 2.1 Consensus size: 699
11110465 AATGAACACG
* * * * *
11110475 TATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATACGC
1 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATACGC
* * * * *
11110540 AAGTCGGGGATC-AGCCCGGTCCTCCCATGCGTGCTATCGATCCTATTGCTGGTCCTGCTGCCGC
66 AAGCCGGGGATCGAGCCCAGTCCTCCCATGCGTGCTATCGATCCTATTGCTGCTCCTGCTACCAC
* * *
11110604 AACCCTCGATCCGATCAAATCTTAGACTGGAAATGAACTCCGTATTCTTAGACATGGAATGAACT
131 AACCCTCGATCCGATCAAATCTTAGACTGGAAATGAACTCCATATGCTTAGACATGGAATAAACT
* * * * **
11110669 CCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGGTGCTCAACCAGCTGAGAGGTGAAATG
196 CCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCAGGGCGCTCAACCAGCGGAGAGGCAAAATG
* **** * * *
11110734 TGCAAGTCGGGGATCAGCTTGGTCCCACCCTGCATGCTGTCGATCCTACTATCGTAACCCTCACT
261 CGCAAGTCGGGGATCAGCCCCATCCCACCCTACATGCTGTCGATCCTACTACCGCAACCCTCACT
* *
11110799 CCCCTCTGATCTTAGACTAGAAATGAACTCTGTATGCCTAAGTCAACCCATGAAAGAAGCGTGCG
326 CCCATCTGATCTTAGACTAGAAATGAACTCTGTATGCCTAAGTCAACCCACGAAAGAAGCGTGCG
* * * * *
11110864 GGTGCTAAGCCGACCGTAGAGGCATAATGTACAAGCTGAGGATCGGCCTGATCCCCCTCTGCGTG
391 GGTGCTAAGCCGACCGGAGAGGCATAATGCACAAGCAGAGGATCGACCCGATCCCCCTCTGCGTG
* * *
11110929 TCGTCGGTCTTGCTACCAGAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATG
456 TCG-CGGTCCTCCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATG
* ***
11110994 CCTAAGTCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCGGTTTGAAAGGCAGAATGCGCAAGC
520 CCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCGGCCGGAAAGGCAGAATGCGCAAGC
* * *
11111059 TGGGGATCGACCTGATCCCCCTTGCGTGCTATCGATTCTGCTGCCGCAACCCTCAGTCCAGTTAG
585 CGGGGATCGACCCGATCCCCCTTGCGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCCAGTTAG
* **
11111124 ATCTTAGACTAGGAATGAACTCCGTACGCTTAGATTAGAGATGAACTCTG
650 ATCTTAGACTAGGAATGAACTCCGTACGCTTAGACTAGAGATGAACTCCA
* * * * *
11111174 TATGCCTAAGTCAACCCACGAAACGAGCATGTGGGTGCTCAGCCGACTGGAGAGGCAGAATACGT
1 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATACGC
* * * * *
11111239 AAGCTGGGGATCGA-CCCAGTCC-CCCTTGCGTGCTGTCGATCCTGTTGCTGCTCCTGCTACCAT
66 AAGCCGGGGATCGAGCCCAGTCCTCCCATGCGTGCTATCGATCCTATTGCTGCTCCTGCTACCAC
*** * *
11111302 AACCCTCGATCCGATCCGTTCTTAGACTGGGAATGAACTTCATATGCTTAGACATGGAATAAACT
131 AACCCTCGATCCGATCAAATCTTAGACTGGAAATGAACTCCATATGCTTAGACATGGAATAAACT
** *
11111367 CCGTATGCCTAAGCCAACCCATGAAACGAGAGTGC-GGGCGCTCAGTCGGTCGGAGAGGCAAAAT
196 CCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCAGGGCGCTCAACCAG-CGGAGAGGCAAAAT
* * * *
11111431 GCGTAAG-CTGGGGATC-GACCCCATCCC-CCCTACGTGCTGTCGATCCTCCTGCCGCAACCCTC
260 GCGCAAGTC-GGGGATCAG-CCCCATCCCACCCTACATGCTGTCGATCCTACTACCGCAACCCTC
** * * * *
11111493 GGTCCGATCTGATCTTAGACTGGGAATGAACT-TCGTATGCTTAAGTCAACCCACGAAATG-AGC
323 ACTCCCATCTGATCTTAGACTAGAAATGAACTCT-GTATGCCTAAGTCAACCCACGAAA-GAAGC
* * ** * *
11111556 GTTCGGGTGCTGAGCCGGTCGGAGAGGCATAATGCGCAAGTCAG-GGATCGACCCGGTCCCCCTC
386 GTGCGGGTGCTAAGCCGACCGGAGAGGCATAATGCACAAG-CAGAGGATCGACCCGATCCCCCTC
*
11111620 TGCGTGCTAC-CGGTCCTCCTACCACAACCCTCGGTCC-AGTTGGGGCTTAGACATGGAATGAAC
450 TGCGTG-T-CGCGGTCCTCCTACCACAACCCTCGGTCCGA-CTGGGGCTTAGACATGGAATGAAC
* *
11111683 TCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG-CAGGCCGGAGAGGCAGAA
512 TCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTC-GGCCGGAAAGGCAGAA
* * * *
11111747 TGCGCAAGCCGGGGATCGGCCCGATCCCCC-TGCGTGCTGTCGATCCTGCTGCCGCAACCTTCGG
576 TGCGCAAGCCGGGGATCGACCCGATCCCCCTTGCGTGCTATCGATCCTGCTGCCGCAACCCTCAG
** * * * * *
11111811 TCTGGTCTGGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCA
641 TCCAGT-TAGATCTTAGACTAGGAATGAACTCCGTACGCTTAGACTAGAGATGAACTCCA
* * * * *
11111871 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCATCCGACCAGAGAGGCAGGATGCGC
1 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATACGC
*
11111936 AAGCCAGGGATCGA
66 AAGCCGGGGATCGA
11111950 ACGGGTGGTA
Statistics
Matches: 657, Mismatches: 107, Indels: 26
0.83 0.14 0.03
Matches are distributed among these distances:
696 37 0.06
697 390 0.59
698 156 0.24
699 73 0.11
700 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (699 bp):
TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATACGC
AAGCCGGGGATCGAGCCCAGTCCTCCCATGCGTGCTATCGATCCTATTGCTGCTCCTGCTACCAC
AACCCTCGATCCGATCAAATCTTAGACTGGAAATGAACTCCATATGCTTAGACATGGAATAAACT
CCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCAGGGCGCTCAACCAGCGGAGAGGCAAAATG
CGCAAGTCGGGGATCAGCCCCATCCCACCCTACATGCTGTCGATCCTACTACCGCAACCCTCACT
CCCATCTGATCTTAGACTAGAAATGAACTCTGTATGCCTAAGTCAACCCACGAAAGAAGCGTGCG
GGTGCTAAGCCGACCGGAGAGGCATAATGCACAAGCAGAGGATCGACCCGATCCCCCTCTGCGTG
TCGCGGTCCTCCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGC
CTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCGGCCGGAAAGGCAGAATGCGCAAGCC
GGGGATCGACCCGATCCCCCTTGCGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCCAGTTAGA
TCTTAGACTAGGAATGAACTCCGTACGCTTAGACTAGAGATGAACTCCA
Found at i:11112583 original size:26 final size:26
Alignment explanation
Indices: 11112545--11112597 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11112535 GGCTCAAACT
*
11112545 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
11112571 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
11112597 C
1 C
11112598 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:11112961 original size:159 final size:156
Alignment explanation
Indices: 11112570--11112977 Score: 417
Period size: 157 Copynumber: 2.6 Consensus size: 156
11112560 AACTCCGTAT
*
11112570 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAG
1 GCTT-GACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
* ** * * *
11112635 TCAACCGGAGAGGCAGAATGCGCAAGCCGAGGACCGGCCCGATCCCCCCTACGTGCTGTCAACCC
65 CCGGCCGGAGAGGCAAAATGCGCAAGCCGAGGACCGACCCAATCCCCCCTACGTGCTGTCAACCC
** *
11112700 TGCTGCTGCAACCCTCAGTCTGGCTAA
130 TGCTGCCACAACCCTCAGTCCGGCTAA
* * * * * * * *
11112727 TCTTAAGC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCACTGA
1 GCTTGA-CAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCA
* * * * * *
11112791 GCTGGCCGGAGAGGCATAATGCGCAAGCC-AGGGATCTACTCAATCCCCCTCTATGTGCTGTCAT
64 GCCGGCCGGAGAGGCAAAATGCGCAAGCCGA-GGACCGACCCAATCCCCC-CTACGTGCTGTCA-
* * *
11112855 TCCC-GCTGCCACAACCCTCGGTCCGGCTAGG
126 ACCCTGCTGCCACAACCCTCAGTCCGGCTA-A
* * * *
11112886 GCTTGGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTTAG
1 GCTT-GACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
** *
11112951 CCGGTTGGAGAGGTAAAATGCGCAAGC
65 CCGGCCGGAGAGGCAAAATGCGCAAGC
11112978 TGGGGATCAG
Statistics
Matches: 201, Mismatches: 42, Indels: 14
0.78 0.16 0.05
Matches are distributed among these distances:
156 3 0.01
157 88 0.44
158 33 0.16
159 75 0.37
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (156 bp):
GCTTGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
CGGCCGGAGAGGCAAAATGCGCAAGCCGAGGACCGACCCAATCCCCCCTACGTGCTGTCAACCCT
GCTGCCACAACCCTCAGTCCGGCTAA
Found at i:11112984 original size:159 final size:156
Alignment explanation
Indices: 11112570--11113010 Score: 429
Period size: 159 Copynumber: 2.8 Consensus size: 156
11112560 AACTCCGTAT
*
11112570 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAG
1 GCTT-GACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
* ** * * * * *
11112635 TCAACCGGAGAGGCAGAATGCGCAAGCCGAGGACCGGCCCGATCCCCCCTACGTGCTGTCAACCC
65 CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCAATCCCCCCTACGTGCTGTCAACCC
** *
11112700 TGCTGCTGCAACCCTCAGTCTGGCTAA
130 TGCTGCCACAACCCTCAGTCCGGCTAA
* * * * * * * *
11112727 TCTTAAGC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCACTGA
1 GCTTGA-CAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCA
* * * * * * *
11112791 GCTGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCTACTCAATCCCCCTCTATGTGCTGTCATT
64 GCCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCAATCCCCC-CTACGTGCTGTCA-A
* *
11112856 CCC-GCTGCCACAACCCTCGGTCCGGCTAGG
127 CCCTGCTGCCACAACCCTCAGTCCGGCTA-A
* * * *
11112886 GCTTGGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTTAG
1 GCTT-GACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
** * * ** *
11112951 CCGGTTGGAGAGGTAAAATGCGCAAGCTGGGGATC-AGCCCGGTCCCCCCTGCGTGCTGTC
65 CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGA-CCCAATCCCCCCTACGTGCTGTC
11113011 GCAACCCTCA
Statistics
Matches: 225, Mismatches: 51, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
156 2 0.01
157 88 0.39
158 44 0.20
159 89 0.40
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (156 bp):
GCTTGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
CGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCAATCCCCCCTACGTGCTGTCAACCCT
GCTGCCACAACCCTCAGTCCGGCTAA
Found at i:11114101 original size:26 final size:26
Alignment explanation
Indices: 11114065--11114117 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11114055 CCGATTCGAT
*
11114065 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11114091 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11114117 C
1 C
11114118 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11114304 original size:26 final size:26
Alignment explanation
Indices: 11114275--11114325 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11114265 TGATCCGATC
*
11114275 TTAGAC-TGGGAATGAACTCTGTATGG
1 TTAGACAT-GGAATGAACTCCGTATGG
11114301 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
11114326 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGG
Found at i:11114811 original size:26 final size:26
Alignment explanation
Indices: 11114775--11114827 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11114765 CCGATCCGAT
11114775 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
11114801 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11114827 C
1 C
11114828 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11115197 original size:26 final size:26
Alignment explanation
Indices: 11115157--11115207 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11115147 CGGTCTGATC
11115157 TTAGACTGGGAATGAACTCCATATGT
1 TTAGACTGGGAATGAACTCCATATGT
11115183 TTAGACTAGGG-ATGAACTCCATATG
1 TTAGACT-GGGAATGAACTCCATATG
11115208 CCTAGGTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGT
Found at i:11115660 original size:26 final size:26
Alignment explanation
Indices: 11115631--11115683 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11115621 CCAGTCCGAT
11115631 CTTAGACT-GGGAATAAACTCCGTATG
1 CTTAGACTAGGG-ATAAACTCCGTATG
*
11115657 CTTAGACTAGGGATAAACTCTGTATG
1 CTTAGACTAGGGATAAACTCCGTATG
11115683 C
1 C
11115684 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATAAACTCCGTATG
Found at i:11116546 original size:26 final size:26
Alignment explanation
Indices: 11116495--11116547 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11116485 TTGGTCTGAT
*
11116495 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
11116521 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11116547 C
1 C
11116548 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11116938 original size:26 final size:26
Alignment explanation
Indices: 11116897--11116947 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
11116887 CCGATCCGAT
*
11116897 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
11116923 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
11116948 TCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11117055 original size:403 final size:395
Alignment explanation
Indices: 11116294--11117057 Score: 1066
Period size: 403 Copynumber: 1.9 Consensus size: 395
11116284 AGTCCCCCTC
*
11116294 TGCGTGCTGTCAGTCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCC
1 TGCGTGCTGTCAGTCCGCTGCCACAACCCCCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCC
* ** ** *
11116359 CTATGCCTAAGCCAACCCACGAAACAGGCGTGTGGGTGCTCAGCGGTCAGAAAGGCAGAATACGC
66 CTATGCCTAAGCCAAACCACGAAACAGGCGTACGGGCACTCAGCGATCAGAAAGGCAGAATACGC
* * * ** * ** *
11116424 AAGCCGGGGATCGGCCCGATCCCCTCTGCATGTTGCCGATCCTGCTGTCGCAACCCTCGGTTTGG
131 AAGCCGAGGATCGACCCGATCCCCCCTGCATGCCGCCGATCCTGCTGCCGCAACCCTCGGTCCGA
* *
11116489 TCTGATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
196 TCCGATCTTAGACTAGGAATGAACTTCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
* * * *
11116554 CAACCACGAAACGAGCGTGCGGATGCTCAGCTGGCCAGAGACGCAGGAGGCGCAAGCCGGGGATC
261 CAACCACGAAACGAGCGTGCAGACGCTCAGCTGACCAGAGACGCAGGAGGCACAAGCCGGGGATC
11116619 GAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATACGCAGGACAGGGATCGACCCGGTCCACCT
326 GAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATACGCAGGACAGGGATCGACCCGGTCCACCT
11116684 CTACG
391 CTACG
* *
11116689 TGCGTGCTGTC-GATCCTGCTGCCACAACCCCCGGTTCGGCTGGGGCTTAGACATGGAATGAACT
1 TGCGTGCTGTCAG-TCC-GCTGCCACAACCCCCGGTCCAGCTGGGGCTTAGACATGGAATGAACT
* * * * * *
11116753 CCCTATGCCTAAGCCAAACCACGAAACGGGCGTACGGGCACTTAGCCGATCGGAGAGGTAGAATG
64 CCCTATGCCTAAGCCAAACCACGAAACAGGCGTACGGGCACTCAG-CGATCAGAAAGGCAGAATA
*
11116818 CGCAAGCCGAGGATCGACCC-AGTCCCCCCTGCGTGCCGCCGATCCTGCTGCCGCAACCCTCGAT
128 CGCAAGCCGAGGATCGACCCGA-TCCCCCCTGCATGCCGCCGATCCTGCTGCCGCAACCCTCG--
*
11116882 CCGATCCGATCCGATCTTAGACTAGGAATGAAC-TCTGTATGCTTAGACTGGGGATGAACTCCGT
190 --G-TCCGATCCGATCTTAGACTAGGAATGAACTTC-ATATGCTTAGACTGGGGATGAACTCCGT
* * * *
11116946 ATTCCTAAGTCAACCCATGAAACGAGCGTGCAGACGCTCAGCTGACCAGAGAGGCAGGATGCACA
251 ATGCCTAAGTCAA-CCACGAAACGAGCGTGCAGACGCTCAGCTGACCAGAGACGCAGGAGGCACA
* *
11117011 AGTCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCAGATCTTCATA
315 AGCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATA
11117058 TTTCTGCCAT
Statistics
Matches: 320, Mismatches: 38, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
394 1 0.00
395 14 0.04
396 83 0.26
397 67 0.21
401 3 0.01
402 63 0.20
403 89 0.28
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (395 bp):
TGCGTGCTGTCAGTCCGCTGCCACAACCCCCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCC
CTATGCCTAAGCCAAACCACGAAACAGGCGTACGGGCACTCAGCGATCAGAAAGGCAGAATACGC
AAGCCGAGGATCGACCCGATCCCCCCTGCATGCCGCCGATCCTGCTGCCGCAACCCTCGGTCCGA
TCCGATCTTAGACTAGGAATGAACTTCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
CAACCACGAAACGAGCGTGCAGACGCTCAGCTGACCAGAGACGCAGGAGGCACAAGCCGGGGATC
GAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATACGCAGGACAGGGATCGACCCGGTCCACCT
CTACG
Found at i:11118000 original size:26 final size:26
Alignment explanation
Indices: 11117964--11118016 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11117954 CTGGTTCAAT
*
11117964 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
11117990 CTTAGATTGGGGATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
11118016 C
1 C
11118017 CCCCTGCGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:11118412 original size:26 final size:26
Alignment explanation
Indices: 11118383--11118435 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11118373 CCGATCTGAT
*
11118383 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11118409 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11118435 C
1 C
11118436 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11118913 original size:21 final size:21
Alignment explanation
Indices: 11118865--11118914 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
11118855 GAGGATCCAC
* *
11118865 TCGGTCCCCCTCTGCATGCTG
1 TCGGTCCTCCTCTGCATGCTA
* * *
11118886 CCAGTCCTCCTCTGCGTGCTA
1 TCGGTCCTCCTCTGCATGCTA
11118907 TCGGTCCT
1 TCGGTCCT
11118915 GCTGCCACAA
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.06, C:0.42, G:0.22, T:0.30
Consensus pattern (21 bp):
TCGGTCCTCCTCTGCATGCTA
Found at i:11119155 original size:26 final size:25
Alignment explanation
Indices: 11119114--11119165 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
11119104 CTGATCTGAT
11119114 CTTAGACTAGAATGAACTCCATATG
1 CTTAGACTAGAATGAACTCCATATG
* *
11119139 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TAGAATGAACTCCATATG
11119165 C
1 C
11119166 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (25 bp):
CTTAGACTAGAATGAACTCCATATG
Found at i:11119379 original size:156 final size:158
Alignment explanation
Indices: 11119148--11119445 Score: 392
Period size: 157 Copynumber: 1.9 Consensus size: 158
11119138 GCTTAGACAT
* *
11119148 GGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGTGTACGAGCGGTTAGCCAACCGGAG
1 GGAATGAACTCCGTACGCCTAAGCCAACCAACGAAACGAGCGTACGAGCGGTTAGCCAACCGGAG
* * * * *
11119213 ATGCAAAATGCGTAAG-CTGGGGACCGGCC-CATCCTCGC-CTGTGTGCTGTCGATCTTGCTA-C
66 AGGCAAAATGCGCAAGTC-GGGGACCGACCTCATCC-CCCTCTGTGTGCTGTCGATCCTGC-AGC
11119274 CACAACCCTCAGTCCGGTCCGATCTTTGACG
128 CACAACCCTCAGTCCGGTCCGATCTTTGACG
* * *
11119305 GGAATGAACTTCGTACGCCTAAGTCAACC-ACGAAACGAGCGTACGGGC-GTTGAGCCAACCGGA
1 GGAATGAACTCCGTACGCCTAAGCCAACCAACGAAACGAGCGTACGAGCGGTT-AGCCAACCGGA
* * *
11119368 GAGGCATAATGCGCAAGTCGGGGATCGACCTGATCCCCCTCTGTGTGCTGTCGATCCTGCAGCCA
65 GAGGCAAAATGCGCAAGTCGGGGACCGACCTCATCCCCCTCTGTGTGCTGTCGATCCTGCAGCCA
*
11119433 CAACCCTCGGTCC
130 CAACCCTCAGTCC
11119446 AGCTGGGGCT
Statistics
Matches: 122, Mismatches: 14, Indels: 10
0.84 0.10 0.07
Matches are distributed among these distances:
155 3 0.02
156 54 0.44
157 65 0.53
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCGTACGCCTAAGCCAACCAACGAAACGAGCGTACGAGCGGTTAGCCAACCGGAG
AGGCAAAATGCGCAAGTCGGGGACCGACCTCATCCCCCTCTGTGTGCTGTCGATCCTGCAGCCAC
AACCCTCAGTCCGGTCCGATCTTTGACG
Found at i:11119936 original size:26 final size:26
Alignment explanation
Indices: 11119885--11119937 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11119875 CCGGTCCGAT
*
11119885 CTTAGACTAGAAATGAACTCTATATG
1 CTTAGACTAGAAATGAACTCCATATG
* * *
11119911 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCATATG
11119937 C
1 C
11119938 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCATATG
Found at i:11120264 original size:26 final size:26
Alignment explanation
Indices: 11120228--11120280 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11120218 CTGATTTGAT
11120228 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
11120254 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11120280 C
1 C
11120281 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11120382 original size:184 final size:183
Alignment explanation
Indices: 11120069--11120634 Score: 505
Period size: 196 Copynumber: 3.0 Consensus size: 183
11120059 TTTAGCTGGG
* * * * * * * **
11120069 GCTTAGACATGGAATGAACTCCCTATGCCTAATCCAACCTACGAAA-TAGGCGTACGGGTGCTCA
1 GCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCATGCGGACGCTCA
* * ** * ** *
11120133 -ACCGACCGAAGAGGCAGAATGCGTAAGTCAAGGATCGACCCGGTCCCCCCTGCGTGTTGCCAAT
65 GA-AGACCGAAGAGGCAGAATACACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCAAT
* *
11120197 CCTGCTGCCACAACCCTCGATCTGATTTGATCTTAGACTGGGAATGAACTCCATAT
129 CCTGCTGCCACAACCCTCGATC-GGTCTGATCTTAGACTGGGAATGAACTCCATAT
* * * * * *
11120253 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGG-CGGTC
1 GCTTAAACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGC-GGACGCTC
* * * *
11120316 AGAAGGCC-AGAGAGGTAGAATACACAAGCCGGGGATCGACTCGGTCCCCCTTGCGTGCTGCCAA
64 AGAAGACCGA-AGAGGCAGAATACACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCAA
* *
11120380 TCCTGCTGCTGCTCCAGCTACCGCAAGCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCC
128 T-C--CTGCTG---C--C-A---CAACCCTCGAT-CGGTCTGATCTTAGACTGGGAATGAACTCC
*
11120445 GTAT
180 ATAT
11120449 GCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGACGCTCAG
1 GCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGACGCTCAG
** * * * * * **
11120514 TCGACCGAAGAGGCAGAGTGCGCAAGTCGGGGATC-AGCCCGGTCCCCCCTGCATGCTATCAATC
66 AAGACCGAAGAGGCAGAATACACAAGCCGGGGATCGA-CCCGGTCCCCCCTGCGTGCTGCCAATC
* * *
11120578 CTGCTGCCGCAACCCTCTGTTCGGTCTGATCTTAGACTTGGAATGAACTCCATAT
130 CTGCTGCCACAACCCTC-GATCGGTCTGATCTTAGACTGGGAATGAACTCCATAT
11120633 GC
1 GC
11120635 CTAAGTCAAC
Statistics
Matches: 307, Mismatches: 52, Indels: 46
0.76 0.13 0.11
Matches are distributed among these distances:
183 2 0.01
184 135 0.44
185 7 0.02
187 6 0.02
188 1 0.00
190 2 0.01
192 1 0.00
193 7 0.02
195 4 0.01
196 139 0.45
197 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (183 bp):
GCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGACGCTCAG
AAGACCGAAGAGGCAGAATACACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCAATCC
TGCTGCCACAACCCTCGATCGGTCTGATCTTAGACTGGGAATGAACTCCATAT
Found at i:11120805 original size:159 final size:155
Alignment explanation
Indices: 11120449--11120951 Score: 544
Period size: 158 Copynumber: 3.2 Consensus size: 155
11120439 AACTCCGTAT
* * *
11120449 GCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGACGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG-CG-TTAG
* * * * * * *
11120514 TCGACCGAAGAGGCAGAGTGCGCAAGTCGGGGATCAGCCCGGTCCCCCCTGCATGCTATCAATCC
64 CCGATCGGAGAGGCAGAATGCACAAGTCGGGGATCAGCCCGGTCCCCCCTGCATGCTGTCGATCC
* *
11120579 TGCTGCCGCAACCCTCTGT-TCGGTCTGA
129 TGCTGCCACAACCCTCGGTCT-GG-CTGA
* * * * * * *
11120607 TCTTAGACTTGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGTGTTCGAGCGTTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG-GCGTT-AG
* * * * * *
11120672 CCGATCGGAGAGGCATAATGCACAAGTCGAGGATCAGCTCGGTCCCCCTCTACGTGCTGTCGGT-
64 CCGATCGGAGAGGCAGAATGCACAAGTCGGGGATCAGCCCGGTCCCCC-CTGCATGCTGTCGATC
* *
11120736 CTCGTTGCCACAACCCTCGGTCTGGCTAGG
128 CT-GCTGCCACAACCCTCGGTCTGGCT-GA
* * *
11120766 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGC-GTTAG
* * * *
11120831 CCGGTCGGAGAGGCAGAACGCACAAGTCGGGGACCAGCCCGGTCCCCCCCGCATGCTGTCGATCC
64 CCGATCGGAGAGGCAGAATGCACAAGTCGGGGATCAGCCCGGTCCCCCCTGCATGCTGTCGATCC
*
11120896 TGCTGCCACAACCCTCGGTCTGGTTCGA
129 TGCTGCCACAACCCTCGGTCTGGCT-GA
*
11120924 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
11120952 TTAGACTAGG
Statistics
Matches: 283, Mismatches: 52, Indels: 20
0.80 0.15 0.06
Matches are distributed among these distances:
157 2 0.01
158 153 0.54
159 124 0.44
160 4 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCGTTAGCC
GATCGGAGAGGCAGAATGCACAAGTCGGGGATCAGCCCGGTCCCCCCTGCATGCTGTCGATCCTG
CTGCCACAACCCTCGGTCTGGCTGA
Found at i:11120966 original size:26 final size:26
Alignment explanation
Indices: 11120925--11120977 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11120915 CTGGTTCGAT
11120925 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11120951 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
11120977 C
1 C
11120978 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.