Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 66 of 402
Found at i:11121451 original size:26 final size:26
Alignment explanation
Indices: 11121411--11121462 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11121401 GGCTCAAAAT
11121411 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
11121437 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGCAATGAACTCCGTATG
11121463 GCTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:11121959 original size:26 final size:26
Alignment explanation
Indices: 11121922--11121976 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
11121912 CGGTCCGATG
*
11121922 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTACATATGC
*
11121948 TTAGACAT-GGAATGAACTACGTATGC
1 TTAGAC-TGGGAATGAACTACATATGC
11121974 TTA
1 TTA
11121977 AGCCAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTACATATGC
Found at i:11122302 original size:159 final size:157
Alignment explanation
Indices: 11122100--11122449 Score: 380
Period size: 159 Copynumber: 2.2 Consensus size: 157
11122090 CTCAGTTTGA
* * * * * * *
11122100 TCCGATCTTAGACTGAGAATTAACTCTATATGCCTAAGTCAACCCACGAAA-TGAGTGTGCGGGT
1 TCCGAGCTTAGACTG-GAATGAACTCCATATGCCTAAGCCAACCCAC-AAAGTGAGCGTACGGGC
* * * * *
11122164 GTTGAGCCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTG
64 GCTCAGCCGGCCGAAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGT-CCCCTCTGCGTGCTG
11122229 CC-AGTCCCGCTGCCACAACCCTCGGTCCGG
128 CCGA-TCCCGCTGCCACAACCCTCGGTCCGG
** * * *
11122259 TTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAGTGGGCGTACGGGCG
1 TCCGAGCTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCACAAAGTGAGCGTACGGGCG
** * * *
11122324 CTCAGCCGGTTGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGTTGCC
65 CTCAGCCGGCCGAAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCTCTGCGTGCTGCC
* * * *
11122389 GATCCTGCTGTCGCAACCCTCGGTCTGG
130 GATCCCGCTGCCACAACCCTCGGTCCGG
* *
11122417 TCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 TCCGAGCTTAGACT-GGAATGAACTCCATATGC
11122450 TTAGACTGGG
Statistics
Matches: 156, Mismatches: 31, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
157 1 0.01
158 67 0.43
159 86 0.55
160 2 0.01
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (157 bp):
TCCGAGCTTAGACTGGAATGAACTCCATATGCCTAAGCCAACCCACAAAGTGAGCGTACGGGCGC
TCAGCCGGCCGAAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCTCTGCGTGCTGCCG
ATCCCGCTGCCACAACCCTCGGTCCGG
Found at i:11122452 original size:26 final size:26
Alignment explanation
Indices: 11122423--11122475 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11122413 CTGGTCCGAT
11122423 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11122449 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11122475 C
1 C
11122476 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11123646 original size:26 final size:26
Alignment explanation
Indices: 11123617--11123669 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11123607 CCGATCTGAT
11123617 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11123643 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11123669 C
1 C
11123670 CTGAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11124535 original size:26 final size:26
Alignment explanation
Indices: 11124484--11124536 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11124474 CCGGTCTGAT
*
11124484 CTTAGACTGGGAATGAACTGCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
11124510 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11124536 C
1 C
11124537 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11125243 original size:26 final size:26
Alignment explanation
Indices: 11125214--11125264 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11125204 CTGGTTCGAT
*
11125214 CTTAGAC-TGGGAATGAACTTCGTATA
1 CTTAGACAT-GGAATGAACTCCGTATA
11125240 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
11125265 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATA
Found at i:11125434 original size:26 final size:26
Alignment explanation
Indices: 11125398--11125450 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11125388 CTGGTCTGAT
11125398 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* * *
11125424 CTTAGACTGGGGATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
11125450 C
1 C
11125451 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:11125501 original size:184 final size:184
Alignment explanation
Indices: 11125182--11125523 Score: 454
Period size: 184 Copynumber: 1.9 Consensus size: 184
11125172 TTGCTGCTGG
* * * * *
11125182 TCCTGCTGCCATAATCCTTGGTCTGGTTCGATCTTAGACTGGGAATGAACTTCGTATACTTAGAC
1 TCCTGCTGCCATAACCCTCGATCTGGTTCGATCTTACACTGGGAATGAACTCCGTATACTTAGAC
* * * * *
11125247 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTAGGCGCTCAGCCGACCGG
66 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGACCAG
*
11125312 AGAGGCAGAATGCACAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTACCGA
131 AGAGGCAGAATGCACAAGCCCGGGATCGGCTCGATCCCCCCTGCGTGCTACCGA
* *
11125366 TCCTGCTGTCATAACCCTCGATCTGG-TCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGA
1 TCCTGCTGCCATAACCCTCGATCTGGTTC-GATCTTACACTGGGAATGAACTCCGTATACTTAGA
* * * * * *
11125430 C-TGGGGATGAACTCTGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCGCTCAACCGACT
65 CAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGACC
* * *
11125494 AGAGAGGCAGGATGCGCATGCCCGGGATCG
129 AGAGAGGCAGAATGCACAAGCCCGGGATCG
11125524 AACGGGTGGT
Statistics
Matches: 134, Mismatches: 22, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
183 3 0.02
184 131 0.98
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.22
Consensus pattern (184 bp):
TCCTGCTGCCATAACCCTCGATCTGGTTCGATCTTACACTGGGAATGAACTCCGTATACTTAGAC
ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGACCAG
AGAGGCAGAATGCACAAGCCCGGGATCGGCTCGATCCCCCCTGCGTGCTACCGA
Found at i:11127125 original size:355 final size:355
Alignment explanation
Indices: 11126475--11127128 Score: 838
Period size: 355 Copynumber: 1.8 Consensus size: 355
11126465 CGATTTGGTC
*
11126475 CGATCTTAGACTGGGAATGAACTCCATATGCTTAGGCATCGAATGAACTCCGTATGCCTAAGCCA
1 CGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATCGAATGAACTCCGTATGCCTAAGCCA
* * * * *
11126540 ACCCATGAAACGAGCTTGCGGGCGCTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
66 ACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGCCAGAATGCGCAAGCCGAGGAACG
* * * * *
11126605 ACCCGGTCCACCTCTGCGTGCTGCCTGTCTCGTTACCACAACCCTTGGTCCGGTTGGGGCTTAGA
131 ACCCGGTCCACCTCTGCGTGCAGCCTGTCTCGCTACCACAACCCTCGGTCCGGTTGGAGCATAGA
* * *
11126670 CATGGAATGAACTCCGTATGCCAAAGCTAACCCAAGAAACGAGCGTGCGGGTGCTCAGCCGGCCA
196 CATGGAATAAACTCCGTATGCCAAAGCTAACCCAAGAAACGAGCGTACGGGTGCTCAGCCGGACA
* *
11126735 GAAAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCTCCTGTGTGCTGTCGATCCTACTGCT
261 GAAAGGCAGAATGCCCAAGCCGAGGATCAGCCCGATCCCTCCTGTGTGCTGTCGATCCTACTGCT
11126800 GGTCCTACGGTCGCAACCTTCCGTTCGGTT
326 GGTCCTACGGTCGCAACCTTCCGTTCGGTT
* * *
11126830 CGATCTTTGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
1 CGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATCGAATGAACTCCGTATGCCTAAGCCA
* * *
11126895 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGCCAGAATGCGTAAGTCGAGGAACG
66 ACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGCCAGAATGCGCAAGCCGAGGAACG
* * * * ** *
11126960 GCTCGGTCC-CCTCTTGCGTGCAGTC-GATCTTGCTACCGTAACCCTCGGTCCGGTCT-GATCAT
131 ACCCGGTCCACCTC-TGCGTGCAGCCTG-TCTCGCTACCACAACCCTCGGTCCGGT-TGGAGCAT
* * * * *
11127022 AGA-TTGGGAATAAACTCTGTATGCCTAAG-TCAACCCACA-AAACGAGCGTACGGGTGCTGAGT
193 AGACAT-GGAATAAACTCCGTATGCCAAAGCT-AACCCA-AGAAACGAGCGTACGGGTGCTCAGC
* * * *
11127084 C-GAC-TAAAGCTGCATAATGCCCAAGCTGGGGATCAGCCCGATCCC
255 CGGACAGAAAG--GCAGAATGCCCAAGCCGAGGATCAGCCCGATCCC
11127129 CCTCTACATG
Statistics
Matches: 253, Mismatches: 38, Indels: 16
0.82 0.12 0.05
Matches are distributed among these distances:
353 4 0.02
354 9 0.04
355 238 0.94
356 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (355 bp):
CGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATCGAATGAACTCCGTATGCCTAAGCCA
ACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGCCAGAATGCGCAAGCCGAGGAACG
ACCCGGTCCACCTCTGCGTGCAGCCTGTCTCGCTACCACAACCCTCGGTCCGGTTGGAGCATAGA
CATGGAATAAACTCCGTATGCCAAAGCTAACCCAAGAAACGAGCGTACGGGTGCTCAGCCGGACA
GAAAGGCAGAATGCCCAAGCCGAGGATCAGCCCGATCCCTCCTGTGTGCTGTCGATCCTACTGCT
GGTCCTACGGTCGCAACCTTCCGTTCGGTT
Found at i:11127372 original size:26 final size:26
Alignment explanation
Indices: 11127336--11127388 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11127326 CCGATTTGAT
*
11127336 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11127362 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11127388 C
1 C
11127389 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11128206 original size:696 final size:693
Alignment explanation
Indices: 11126825--11128121 Score: 1527
Period size: 696 Copynumber: 1.9 Consensus size: 693
11126815 ACCTTCCGTT
* * * *
11126825 CGGTTCGATCTTTGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTA
1 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAAATCCGTATGCCTA
* * * * * *
11126890 AGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGCCAGAATGCGTAAGTCGAG
66 AGCCAACCCACCAAACGAGCATGCGGGCACTCAGCCGATCGAAGAGCCAGAATGCGCAAGTCGAG
* * * * * * * * *
11126955 GAACGGCTCGGTCCCCTCTTGCGTGCAGTCGATCTTGCTACCGTAACCCTCGGTCCGGTCTGATC
131 GAACGGCCCGATCCCCTCCTACATGCAGTCGATCCTGCTACCATAACCCTCGGTCCGATCCGATC
* **
11127020 ATAGATTGGGAATAAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGTGCTGAGTC
196 ATAGACTGGGAATAAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCACTGAGTC
* ** * * *
11127085 GACTAAAGCTGCATAATGCCCAAGCTGGGGATCAGCCCGATCCCCCTCTACATGCTGTCGGTCCC
261 GACCAAAGAGGCATAATGCCCAAGCTAGGGATCAGCCAGATCCCCCTCTACATGCTGTCAGTCCC
* * * *
11127150 ACTGCCACAACCCTCGGTCCAGTTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAAC
326 ACTGCCACAACCATCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * ** * *
11127215 ACACAAAATGGGCGTACGGGCGCTTAGTCGGTCGGAGAGGCGAAATGCGTAAGCTGAGGATCGGC
391 ACACAAAACGGGCGTACGGGCGCTCAGTCGACCGGAGAGGCGAAATACGCAAGCTGAGGATCGGC
* *
11127280 CCGATCCCCCCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCCGATTTGATCTTAGACTG
456 CCGATCCCCCCTGCATGCTGCCGATCCTACTGCCGCAACCCTCGATCCGATCTGATCTTAGACTG
** * *
11127345 GGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCAACGAAATGA
521 GGAATGAACTTCGTATGCTTAGACTACGGATAAACTCCGTATGACTAAGTCAACCAACGAAATGA
** * ** * *
11127410 GCGTATGGGCACTCAATTAGCCAGAGAGGTAGAATACGTAAGCCGAGGATCGGCCTGGTCCCCCT
586 GCGTACCGGCACTCAATTAGCCAGAGAGGCAGAATACACAAGCCGAGGATCAGCCTAGTCCCCCT
* *** *
11127475 TACATGTTGTCGATCCTGTTGCTGGTCCTGCTGCCGCAAGCCTCGATC
651 TAC---TTGTCGA--CTGCTGCCAATCCCGCTGCCGCAAGCCTCGATC
11127523 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAAATCCGTATGCCTA
1 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAAATCCGTATGCCTA
** **
11127588 AGCCCTCCCACCAAACGAGCATGCGGGCACTCAGCCGATCGAAGAGGTAGAATGCGCAAG-CTGA
66 AGCCAACCCACCAAACGAGCATGCGGGCACTCAGCCGATCGAAGAGCCAGAATGCGCAAGTC-GA
* * * * * *
11127652 -GATCGGCCCGATCCCC-CCTACATGCTA-TTGATCCTGTTGCTATAACCCTCGGTTCGATCCGA
130 GGAACGGCCCGATCCCCTCCTACATGC-AGTCGATCCTGCTACCATAACCCTCGGTCCGATCCGA
* * * * * *
11127714 TCTTAGACTGGGAATGAACT-TCGTATGCCTAAGTCAACCCACGAAATGAGTGTTCGGGCACTGA
194 TCATAGACTGGGAATAAACTCT-GTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCACTGA
* * * * *
11127778 GAT-GACCGAAGAGGCATAATGCGCAAGGC-AGGGATCGGCTCAG-TCCCCCTCTGCGTGCTGTC
258 G-TCGACCAAAGAGGCATAATGCCCAA-GCTAGGGATCAGC-CAGATCCCCCTCTACATGCTGTC
* * *
11127840 AGTCCCGCTGCCACAACCATTGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
320 AGTCCCACTGCCACAACCATCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* *** *
11127905 GCCAACCCTTGAAACGGGCGTACGGGCGCTCAGTCGACCGGAGAGGC-AGAATACGCAAGGC-GG
385 GCCAACACACAAAACGGGCGTACGGGCGCTCAGTCGACCGGAGAGGCGA-AATACGCAA-GCTGA
* * * * * * *
11127968 GGATTGGCCCGA-GCCCCCTGCATGCTGTCGATCCTGCTGCTGCAACCCTCGATCTGGTCTGATC
448 GGATCGGCCCGATCCCCCCTGCATGCTGCCGATCCTACTGCCGCAACCCTCGATCCGATCTGATC
* **
11128032 TTAGACTGGGAATGAACTTTGTATGCTTAGACTACGGATAAACTCCGTATGACTAAGTCAACCCC
513 TTAGACTGGGAATGAACTTCGTATGCTTAGACTACGGATAAACTCCGTATGACTAAGTCAACCAA
* *
11128097 CGAAATGAGCGTGCCGGCGCTCAAT
578 CGAAATGAGCGTACCGGCACTCAAT
11128122 CGGCTGGAGA
Statistics
Matches: 504, Mismatches: 87, Indels: 19
0.83 0.14 0.03
Matches are distributed among these distances:
695 125 0.25
696 244 0.48
697 22 0.04
698 113 0.22
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (693 bp):
CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAAATCCGTATGCCTA
AGCCAACCCACCAAACGAGCATGCGGGCACTCAGCCGATCGAAGAGCCAGAATGCGCAAGTCGAG
GAACGGCCCGATCCCCTCCTACATGCAGTCGATCCTGCTACCATAACCCTCGGTCCGATCCGATC
ATAGACTGGGAATAAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCACTGAGTC
GACCAAAGAGGCATAATGCCCAAGCTAGGGATCAGCCAGATCCCCCTCTACATGCTGTCAGTCCC
ACTGCCACAACCATCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
ACACAAAACGGGCGTACGGGCGCTCAGTCGACCGGAGAGGCGAAATACGCAAGCTGAGGATCGGC
CCGATCCCCCCTGCATGCTGCCGATCCTACTGCCGCAACCCTCGATCCGATCTGATCTTAGACTG
GGAATGAACTTCGTATGCTTAGACTACGGATAAACTCCGTATGACTAAGTCAACCAACGAAATGA
GCGTACCGGCACTCAATTAGCCAGAGAGGCAGAATACACAAGCCGAGGATCAGCCTAGTCCCCCT
TACTTGTCGACTGCTGCCAATCCCGCTGCCGCAAGCCTCGATC
Found at i:11128927 original size:26 final size:26
Alignment explanation
Indices: 11128898--11128950 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11128888 CCGGTCTGAT
*
11128898 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
11128924 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
11128950 C
1 C
11128951 GTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:11129470 original size:26 final size:26
Alignment explanation
Indices: 11129432--11129484 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11129422 GGCTCAAACT
*
11129432 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
11129458 CTTAGAC-ATGGAATGAACTCCGCATG
1 CTTAGACTA-GGAATGAACTCCGCATG
11129484 C
1 C
11129485 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:11130053 original size:159 final size:157
Alignment explanation
Indices: 11129627--11130128 Score: 393
Period size: 158 Copynumber: 3.2 Consensus size: 157
11129617 AACTCTGTAT
* * * * * *
11129627 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGAGGGTGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCATGCGGGAGCTGAG
* * * * * * * * * **
11129692 CCG-GTCGGAGAGGCAGAATGCGTATGTCAGGGACCGACCCGATCCCCCCTGCGT-ACTATCGAT
65 -CGAGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCCCCCTGCGTGA-TGCCGAT
** * ** ** * * *
11129755 CCTGCTGTCGTAACCCTCAATCTGATTCGA
128 CCCACTGCCACAACCCTCGGTCCGGTCCGA
* * * * * * * *
11129785 TCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCGACCCACGAAATGAGCGTTCGGGCGCTGAG
1 GCTTAGACT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCATGCGGGAGCTGAG
* * * * ** * *
11129850 CGAGTCGGAGAGGCATAATGCGCAAGCCTGGGATCGACTCGGTCCCTTTCTGCGTGCTGCCGGTC
65 CGAGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCC-CCCTGCGTGATGCCGATC
* * *
11129915 CCACTGCCACAACCCTCGGTCTGG-CTGGG
129 CCACTGCCACAACCCTCGGTCCGGTC-CGA
* * *
11129944 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAATGGGCATGCGGGAGCTTAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCATGCGGGAGCTGAG
* *
11130009 CCG-GCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGC-CTGGTCCCCCCTGCGTGATGTCGAT
65 -CGAGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACTC-GGTCCCCCCTGCGTGATGCCGAT
* **
11130072 CCTACTGCCGTAACCCTCGGTCCGGTCCGA
128 CCCACTGCCACAACCCTCGGTCCGGTCCGA
*
11130102 TCTTAGACTGGAATGAACTCCGTATGC
1 GCTTAGACTGGAATGAACTCCGTATGC
11130129 TTAGGCTGGG
Statistics
Matches: 272, Mismatches: 63, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
157 21 0.08
158 131 0.48
159 117 0.43
160 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCATGCGGGAGCTGAGC
GAGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCCCCCTGCGTGATGCCGATCCC
ACTGCCACAACCCTCGGTCCGGTCCGA
Found at i:11130131 original size:25 final size:26
Alignment explanation
Indices: 11130103--11130154 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11130093 CCGGTCCGAT
*
11130103 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
11130128 CTTAGGCTGGGGATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
11130154 C
1 C
11130155 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:11130508 original size:26 final size:26
Alignment explanation
Indices: 11130470--11130520 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11130460 CCAGTTCGAT
11130470 CTTAGACTGGGAATGAACTCTGTATC
1 CTTAGACTGGGAATGAACTCTGTATC
11130496 CTTAGACAT-GGAATGAACTCTGTAT
1 CTTAGAC-TGGGAATGAACTCTGTAT
11130521 GGCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATC
Found at i:11136303 original size:354 final size:355
Alignment explanation
Indices: 11135810--11136449 Score: 838
Period size: 355 Copynumber: 1.8 Consensus size: 355
11135800 GTCCGGTCTG
* *
11135810 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAAACTGGGAATGAACTCCGAATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAAC
* * * * * ** *
11135875 CCATGAAATGAGCATGCGGGCACTCAGTCGGCTGGAGAGGCAGAATGTGCAAGCTGAGGATCGAC
66 CAACGAAACGAGCATGCGGGCACTCAGTCAGCCGGAGAGGCAGAATGCACAAGCTGAGGATCCAC
* * * *** * *
11135940 CTGGTCCCCC-CTGCGTGCTATCGATTCGACTGTTGCAACCTTCGGTT-TGATCCGATCTTAGAC
131 CTAGTCCCCCACTACGTGCTATCGATCCGACTGCCACAACCCTCGGTTCAG-TCCGATCTTAGAC
* * * *
11136003 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGCACGGGTGCTAAATCGGCTGG
195 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGCACGGGCGCTAAACCGACTGG
11136068 AGAGGCATAATGCGCAAGTCGAGGATCAACTTGATCCCCCCTACGTGCTACTGATCCTGCTATTG
260 AGAGGCATAATGCGCAAGTCGAGGATCAACTTGATCCCCCCTACGTGCTACTGATCCTGCTATTG
11136133 GTTCTGCTACCGTAACCATCAGTTCGGTCCA
325 GTTCTGCTACCGTAACCATCAGTTCGGTCCA
* * * *
11136164 ATCTTAAACTGGGAATGCACTCTGAATGCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAAC
1 ATCTTAAACTGGGAATGAACTCCGAATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAAC
** * * *
11136229 CAACGAAACGAGTGTGCTGGCGCTCAG-CTAGCCGGAGAGGCAGAATGCACAAGCTGGGGA-CCA
66 CAACGAAACGAGCATGCGGGCACTCAGTC-AGCCGGAGAGGCAGAATGCACAAGCTGAGGATCCA
* * * **
11136292 TCTCAGTCCCCCACTACGTGCTGTCGATCCTACTGCCACAACCCTCGGTTCAGTTTGATCTTAGA
130 CCT-AGTCCCCCACTACGTGCTATCGATCCGACTGCCACAACCCTCGGTTCAGTCCGATCTTAGA
* ** * *
11136357 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCGCTGAGCCGACTG
194 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGCACGGGCGCTAAACCGACTG
* *
11136422 GAGAGGCATAATGCGCACGTCGGGGATC
259 GAGAGGCATAATGCGCAAGTCGAGGATC
11136450 GGCCCGATCC
Statistics
Matches: 239, Mismatches: 43, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
353 5 0.02
354 112 0.47
355 121 0.51
356 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (355 bp):
ATCTTAAACTGGGAATGAACTCCGAATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAAC
CAACGAAACGAGCATGCGGGCACTCAGTCAGCCGGAGAGGCAGAATGCACAAGCTGAGGATCCAC
CTAGTCCCCCACTACGTGCTATCGATCCGACTGCCACAACCCTCGGTTCAGTCCGATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGCACGGGCGCTAAACCGACTGGA
GAGGCATAATGCGCAAGTCGAGGATCAACTTGATCCCCCCTACGTGCTACTGATCCTGCTATTGG
TTCTGCTACCGTAACCATCAGTTCGGTCCA
Found at i:11136620 original size:159 final size:158
Alignment explanation
Indices: 11136191--11136642 Score: 428
Period size: 159 Copynumber: 2.9 Consensus size: 158
11136181 CACTCTGAAT
* * * * *
11136191 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCAACGAAACGAGTGTGCTGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * *
11136256 CTAGCCGGAGAGGCAGAATGCACAAGCTGGGGACC-ATCTCAGTCCCCCACTACGTGCTGTCGAT
66 CTAGACGGAGAGGCAGAATGCGCAAGCCGGGGACCGA-CTCGGT-CCCCACTACATGCTGCCGAT
* * * *
11136320 CCTACTGCCACAACCCTCGGTTCAGTTTGA
129 CCCACTGCCACAACCCTCAGTTCAGCTGGA
* * * * *
11136350 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * * * * * *
11136414 GC-CGACTGGAGAGGCATAATGCGCACGTCGGGGATCGGCCCGATCCCCATCTGCATGCTGCCGA
65 GCTAGAC-GGAGAGGCAGAATGCGCAAGCCGGGGACCGACTCGGTCCCCA-CTACATGCTGCCGA
* * *
11136478 TCCCACTGGCACAACCCTCAG-TCTGACTGGG
128 TCCCACTGCCACAACCCTCAGTTCAG-CTGGA
* * * *
11136509 GCTTATACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * *
11136574 CTGGTCGGAGAGGCAGAATGCGTAAGCCGGGGACCGACTCGGTCCCC-TTACGTGCTACCGATCC
66 CTAGACGGAGAGGCAGAATGCGCAAGCCGGGGACCGACTCGGTCCCCACTACATGCTGCCGATCC
*
11136638 TACTG
131 CACTG
11136643 TCGTAACCCT
Statistics
Matches: 231, Mismatches: 55, Indels: 16
0.76 0.18 0.05
Matches are distributed among these distances:
157 17 0.07
158 11 0.05
159 200 0.87
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CTAGACGGAGAGGCAGAATGCGCAAGCCGGGGACCGACTCGGTCCCCACTACATGCTGCCGATCC
CACTGCCACAACCCTCAGTTCAGCTGGA
Found at i:11136708 original size:26 final size:26
Alignment explanation
Indices: 11136667--11136719 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11136657 CCGATCTGAT
11136667 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGATTGGGAATGAACTCTATATG
11136693 CTTAGATTAGGG-ATGAACTCTATATG
1 CTTAGATT-GGGAATGAACTCTATATG
11136719 C
1 C
11136720 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCTATATG
Found at i:11137141 original size:158 final size:156
Alignment explanation
Indices: 11136831--11137483 Score: 469
Period size: 158 Copynumber: 4.1 Consensus size: 156
11136821 CTACTGCTGG
* * * * ** * * * *
11136831 TCCTACTGTCACAACCCTCGGTCTGGTCTGATCTTAGGCTTGGAATGAATTCCGTATGCCTAAGC
1 TCCTACTGCCACAACCCTCGATCCGGTCCGATCTTACACTGGGAATGAACTCTGTATGCCTAAGT
* * * * * * * *
11136896 CAACCCACGAAATGAGCTTGCAGGCGTTCAGCCTACCGAAGAGGTAGAATGCACAAGCCAGGATC
66 CAACCCACGAAATGAGCGTACGGGCGCTGAGCC-ACCGAAGAGGCAGAATGCGCAAGCAAGGATC
*
11136961 GGCCCGGTCACCCC-CTGTGTGCTGTCGA
130 GG-CCGGTC-CCCCTCTGCGTGCTGTCGA
* * * *
11136989 TCCTGCTGTCGCAACCCTCGATCCGATCCGATCTTACACTGGGAATGAACTCTGTATGCCTAAGT
1 TCCTACTGCCACAACCCTCGATCCGGTCCGATCTTACACTGGGAATGAACTCTGTATGCCTAAGT
* * * * *
11137054 CAACCCACGAAATGAGCGTACGGGCACTGAGCCAGTCGAAGAGGCATAATGCGTAAGCTGAGGAT
66 CAACCCACGAAATGAGCGTACGGGCGCTGAGCCA-CCGAAGAGGCAGAATGCGCAAGC-AAGGAT
* * * *
11137119 CGGCCTGTCCCCCTCTACGTGCTGCCGG
129 CGGCCGGTCCCCCTCTGCGTGCTGTCGA
* * * * * **
11137147 TCCCACTGCCATAACCCTTGGTCCGG-CTGGGGCTTAGTCA-T-GGAATGAACTC-GCTATGCCT
1 TCCTACTGCCACAACCCTCGATCCGGTC-CGATCTTA--CACTGGGAATGAACTCTG-TATGCCT
* * * * * * * *
11137208 AAGTCAACCCACGAAATGGGCATGCGGGTGCTCGATCGACCGGAGAGGCAGAATGTGCAAGCCAA
62 AAGTCAACCCACGAAATGAGCGTACGGGCGCT-GAGCCACCGAAGAGGCAGAATGCGCAAG-CAA
* * *
11137273 GGATCGACCCGGT-CCCCTTTGCGTGCTGTCAA
125 GGATCG-GCCGGTCCCCCTCTGCGTGCTGTCGA
* * * * * *
11137305 TTCTGCTACCGCAACCCTC-AGTCCGGTCCGATCTTAGACTGGGAATGAACT-TCGTATGCCTGA
1 TCCTACTGCCACAACCCTCGA-TCCGGTCCGATCTTACACTGGGAATGAACTCT-GTATGCCTAA
** * ** * *
11137368 GTCAACCCATAAAATGAGCGTACGGGCGTTGAGCCGGTC-AGAGAGGCATAATGCGCAAGCCAGG
64 GTCAACCCACGAAATGAGCGTACGGGCGCTGAGCC-ACCGA-AGAGGCAGAATGCGCAAG-CAAG
* * *
11137432 GATTGGCTCGGTCCCCCTCTGCATGCTGCCGA
126 GATCGGC-CGGTCCCCCTCTGCGTGCTGTCGA
* *
11137464 TCCCACTGCCACAATCCTCG
1 TCCTACTGCCACAACCCTCG
11137484 GTCTGGCTCA
Statistics
Matches: 374, Mismatches: 100, Indels: 40
0.73 0.19 0.08
Matches are distributed among these distances:
156 1 0.00
157 12 0.03
158 311 0.83
159 48 0.13
160 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.21
Consensus pattern (156 bp):
TCCTACTGCCACAACCCTCGATCCGGTCCGATCTTACACTGGGAATGAACTCTGTATGCCTAAGT
CAACCCACGAAATGAGCGTACGGGCGCTGAGCCACCGAAGAGGCAGAATGCGCAAGCAAGGATCG
GCCGGTCCCCCTCTGCGTGCTGTCGA
Found at i:11137322 original size:316 final size:317
Alignment explanation
Indices: 11136871--11137474 Score: 765
Period size: 316 Copynumber: 1.9 Consensus size: 317
11136861 ATCTTAGGCT
* * * *
11136871 TGGAATGAATTCCGTATGCCTAAGCCAACCCACGAAATGAGCTTGCAGGCGTTCAGCCTACCGAA
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCAGGCGCTCAGCCGACCGAA
* * * * **
11136936 GAGGTAGAATGCACAAGCCAGGATCGGCCCGGTCACCCCCTGTGTGCTGTCGATCCTGCTGTCGC
66 GAGGCAGAATGCACAAGCCAGGATCGACCCGGTCACCCCCTGCGTGCTGTCAATCCTGCTACCGC
*
11137001 AACCCTC-GATCCGATCCGATCTTACACTGGGAATGAAC-TCTGTATGCCTAAGTCAACCCACGA
131 AACCCTCAG-TCCGATCCGATCTTACACTGGGAATGAACTTC-GTATGCCTAAGTCAACCCACAA
* * *
11137064 AATGAGCGTACGGGCACTGAGCCAGTC-GAAGAGGCATAATGCGTAAG-CTGAGGATCGGC-CTG
194 AATGAGCGTACGGGCACTGAGCCAGTCAG-AGAGGCATAATGCGCAAGCCAG-GGATCGGCTCGG
* *
11137126 TCCCCCTCTACGTGCTGCCGGTCCCACTGCCATAACCCTTGGTCCGGCTGGGGCTTAGTCA
257 TCCCCCTCTACATGCTGCCGATCCCACTGCCATAACCCTTGGTCCGGCTGGGGCTTAGTCA
* * * * *
11137187 TGGAATGAACT-CGCTATGCCTAAGTCAACCCACGAAATGGGCATGCGGGTGCTC-GATCGACCG
1 TGGAATGAACTCCG-TATGCCTAAGCCAACCCACGAAATGAGCATGCAGGCGCTCAG-CCGACCG
* ** ** *
11137250 GAGAGGCAGAATGTGCAAGCCAAGGATCGACCCGGTC-CCCTTTGCGTGCTGTCAATTCTGCTAC
64 AAGAGGCAGAATGCACAAGCC-AGGATCGACCCGGTCACCCCCTGCGTGCTGTCAATCCTGCTAC
* * * *
11137314 CGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTGAGTCAACCCATA
128 CGCAACCCTCAGTCCGATCCGATCTTACACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACA
** * *
11137379 AAATGAGCGTACGGGCGTTGAGCCGGTCAGAGAGGCATAATGCGCAAGCCAGGGATTGGCTCGGT
193 AAATGAGCGTACGGGCACTGAGCCAGTCAGAGAGGCATAATGCGCAAGCCAGGGATCGGCTCGGT
*
11137444 CCCCCTCTGCATGCTGCCGATCCCACTGCCA
258 CCCCCTCTACATGCTGCCGATCCCACTGCCA
11137475 CAATCCTCGG
Statistics
Matches: 244, Mismatches: 36, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
315 3 0.01
316 190 0.78
317 51 0.21
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (317 bp):
TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCAGGCGCTCAGCCGACCGAA
GAGGCAGAATGCACAAGCCAGGATCGACCCGGTCACCCCCTGCGTGCTGTCAATCCTGCTACCGC
AACCCTCAGTCCGATCCGATCTTACACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAA
TGAGCGTACGGGCACTGAGCCAGTCAGAGAGGCATAATGCGCAAGCCAGGGATCGGCTCGGTCCC
CCTCTACATGCTGCCGATCCCACTGCCATAACCCTTGGTCCGGCTGGGGCTTAGTCA
Found at i:11138167 original size:26 final size:26
Alignment explanation
Indices: 11138129--11138179 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11138119 GGCTTAAACT
*
11138129 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11138155 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
11138180 CCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11138340 original size:26 final size:26
Alignment explanation
Indices: 11138289--11138341 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11138279 CTAGTCTGAT
* *
11138289 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11138315 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11138341 C
1 C
11138342 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11138821 original size:26 final size:26
Alignment explanation
Indices: 11138788--11138842 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
11138778 CTCTGTATGC
11138788 TGCTTAGACTGGGAATGAACTCCGTA
1 TGCTTAGACTGGGAATGAACTCCGTA
*
11138814 TGCTTAGACTGGGGATGAACTCCGTA
1 TGCTTAGACTGGGAATGAACTCCGTA
11138840 TGC
1 TGC
11138843 CTAAGTCAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (26 bp):
TGCTTAGACTGGGAATGAACTCCGTA
Found at i:11139499 original size:159 final size:158
Alignment explanation
Indices: 11139195--11139577 Score: 389
Period size: 159 Copynumber: 2.4 Consensus size: 158
11139185 GAACTCCGCA
* * * *
11139195 TGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCA
1 TGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
* * * * * *
11139260 GCCGGCCGAAGAGGCAGAATGTACAAGTCGAGGATCGGCCTAGTCCCACCCTGTATGCTGTCGAT
66 GCCGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCGAGTCCCACCCTGTATGCTGCCAAT
** * * *
11139325 CCTGCTATCAGAACCCTCAATTCGATCCG
131 CCCACTACCACAACCCTCAATCCGA-CCG
*
11139354 AT-CTTAGA-ATGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACT
1 -TGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACT
* * * * * *
11139417 GAGCCGACC-AGAGAGGCATAATGCGCCAGCCGGGGATCGGCCCGA-TCCC-CCTCTGTGTGCTG
64 CAGCCGACCGA-AGAGGCAGAATGCACAAGCCGAGGATCGG-CCGAGTCCCACC-CTGTATGCTG
** *
11139479 CCAATCCCACTACCACAACCCTCGGTCCGACTG
126 CCAATCCCACTACCACAACCCTCAATCCGACCG
* * * * * *
11139512 TGGCTTGGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAACGTGTGGGCGCTC
1 T-GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTC
11139577 A
65 A
11139578 ACTAGTTGGA
Statistics
Matches: 183, Mismatches: 33, Indels: 15
0.79 0.14 0.06
Matches are distributed among these distances:
157 1 0.01
158 7 0.04
159 169 0.92
160 6 0.03
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (158 bp):
TGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
GCCGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCGAGTCCCACCCTGTATGCTGCCAAT
CCCACTACCACAACCCTCAATCCGACCG
Found at i:11139723 original size:26 final size:26
Alignment explanation
Indices: 11139672--11139724 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11139662 CCTATCTGAT
*
11139672 CTTAAACTGGGAATGAACTTCATATG
1 CTTAAACTGGGAATGAACTCCATATG
* * *
11139698 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
11139724 C
1 C
11139725 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:11140077 original size:26 final size:26
Alignment explanation
Indices: 11140048--11140100 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11140038 TGCAAAAAAT
11140048 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
11140074 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
11140100 C
1 C
11140101 CTAAGCCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:11140376 original size:26 final size:26
Alignment explanation
Indices: 11140337--11140391 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
11140327 ACGTGCTGCT
*
11140337 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCATATGCC
11140363 TAGACTGAGG-ATGAACTCCATATGCC
1 TAGACTG-GGAATGAACTCCATATGCC
11140389 TAG
1 TAG
11140392 GTCAACCCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCC
Found at i:11140573 original size:26 final size:26
Alignment explanation
Indices: 11140544--11140599 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
11140534 CCGATCCGAT
*
11140544 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
11140570 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
11140596 CTTA
1 CTTA
11140600 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:11141064 original size:26 final size:26
Alignment explanation
Indices: 11141024--11141075 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11141014 TGGTCTGATG
*
11141024 TTAGATTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
11141050 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
11141076 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:11141653 original size:159 final size:158
Alignment explanation
Indices: 11141245--11141665 Score: 386
Period size: 159 Copynumber: 2.7 Consensus size: 158
11141235 ACTCCGTATA
* * * * * * * *
11141245 CTTAGATATGTAATGAACACCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCGCTCAAT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGT
* * * * * *
11141310 CGATCAGAAAGGCAAAATGCGCAAGCCAAGGACCGGCCCGATTCCCCCTGTGTGCTGTCGATCCT
66 CGGTCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCGATTCCCCCTGTGTGCTGTCGATCCC
** *
11141375 GCTGTTACAACCCTCAGTCCGATCCGAT
131 GCTGCCACAACCCTCAGTCCGATCCGAG
* * * * * * *
11141403 CTTAGAC-TGGGAAAGAACTCTGTATG-CTGAAGTCAACTCACGAAACAAGCGTGCAGGCACTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCT-AAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* * * * *
11141466 G-CCGACTGGAGAGGCATAATGCGCAAGCCGAGGATCGGCTCGA-TCCTCTTCTGTGTGCTGTCG
64 GTCGGTC-GGAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCGATTCC-C-CCTGTGTGCTGTCG
* * * * *
11141529 ATCCCGCTGCCACAACCCTCGATTCGGCT-GGGG
126 ATCCCGCTGCCACAACCCTC-AGTCCGATCCGAG
* *
11141562 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGT
* * *
11141627 CGGTCGGAGAGGCAGAATACGTAAGCCTG-GGATCGGCCC
66 CGGTCGGAGAGGCAAAATGCGCAAGCC-GAGGATCGGCCC
11141666 AGTCGCCCCT
Statistics
Matches: 204, Mismatches: 49, Indels: 19
0.75 0.18 0.07
Matches are distributed among these distances:
157 8 0.04
158 75 0.37
159 109 0.53
160 12 0.06
ACGTcount: A:0.26, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGT
CGGTCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCGATTCCCCCTGTGTGCTGTCGATCCC
GCTGCCACAACCCTCAGTCCGATCCGAG
Found at i:11142908 original size:26 final size:26
Alignment explanation
Indices: 11142879--11142931 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11142869 CCGGTCTGAT
11142879 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11142905 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11142931 C
1 C
11142932 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11143112 original size:26 final size:26
Alignment explanation
Indices: 11143074--11143126 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11143064 CCACTTCGAT
*
11143074 CTTAGACTAGGAATGAAATCCTTATG
1 CTTAGACTAGGAATGAAATCCGTATG
*
11143100 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAAATCCGTATG
11143126 C
1 C
11143127 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCCGTATG
Found at i:11143516 original size:171 final size:171
Alignment explanation
Indices: 11143227--11143627 Score: 477
Period size: 171 Copynumber: 2.3 Consensus size: 171
11143217 GTGCTATCGA
* * *
11143227 TCTTGCTGCCGCAACCCTCGGTCTGATTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 TCTTGCTGCCGCAACCCTCGGTCTGACTCGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
11143292 CAACCCATGAAACGAGCGTACGGACGCTGAGCCGGCCAGAGAGGCATAATGCGCAAGTCGGGGAT
66 CAACCCATGAAACGAGCGTACGGACGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGAT
11143357 CAACCCGATACCCCTCTGCATGCTGTCGATCCCGCTGTCGG
131 CAACCCGATACCCCTCTGCATGCTGTCGATCCCGCTGTCGG
* * *
11143398 TCTTGCTG-CGACAACCCTCGGTCTGGCTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAA
1 TCTTGCTGCCG-CAACCCTCGGTCTGACTCGAGCTTAGAC-TGGGAATGAACTCCGTATGCCTAA
* * *
11143461 GCCAACCCATGAAACGAGTGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGG
64 GCCAACCCATGAAACGAGCGTACGGACGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGG
* * * * * * * **
11143526 ATCAGCCCGGTTCCCCCCTACGTGTTGTCGATCTTGCT-TCTGG
129 ATCAACCCGATACCCCTCTGCATGCTGTCGATCCCGCTGTC-GG
* * * * * * * *
11143569 TCCTGTTGCCGCAACCCTCGGTC-CAGTCCGATCTTAGATTGGGAATGAAATCCTTATGC
1 TCTTGCTGCCGCAACCCTCGGTCTGACT-CGAGCTTAGACTGGGAATGAACTCCGTATGC
11143628 TTAGACATGG
Statistics
Matches: 192, Mismatches: 32, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
170 6 0.03
171 183 0.95
172 3 0.02
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.22
Consensus pattern (171 bp):
TCTTGCTGCCGCAACCCTCGGTCTGACTCGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCCATGAAACGAGCGTACGGACGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGAT
CAACCCGATACCCCTCTGCATGCTGTCGATCCCGCTGTCGG
Found at i:11144499 original size:26 final size:26
Alignment explanation
Indices: 11144470--11144522 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11144460 CCGATCCGAT
*
11144470 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
11144496 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
11144522 C
1 C
11144523 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:11145713 original size:26 final size:26
Alignment explanation
Indices: 11145684--11145736 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11145674 CCGGTCTGAT
11145684 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
11145710 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
11145736 C
1 C
11145737 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:11145960 original size:184 final size:184
Alignment explanation
Indices: 11145533--11145973 Score: 515
Period size: 184 Copynumber: 2.4 Consensus size: 184
11145523 TCTGGTTGGG
* * *
11145533 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGCT-CAG--A-T-G
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG-TGCAGACACTCA
* * * * * *
11145593 GTCGA--A-A-AGGTAGAATGCACAAGTTGGGGATCGACCCGATCCCCCCTGCATGCTGCCGATA
65 GTCGACCAGAGAGGCAGAAAGCACAAGCTGGGGACCGACCCAATCCCCCCTACATGCTGCCGATA
* * * * *** *
11145654 CTACTGCCGCAAGCTTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
130 CTACTGCCGCAACCCTCGGTCCGGTCCGATATTAGACTCAAAATGAACTCCATAT
* * * *
11145709 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACACTCAG
* * * * *
11145774 TCGGCCGGAGAGGCAGAAAGCACAAGCTGGGGACCGACCCAATCCCCCCTACGTGCTGTCGATCC
66 TCGACCAGAGAGGCAGAAAGCACAAGCTGGGGACCGACCCAATCCCCCCTACATGCTGCCGATAC
*
11145839 TACTGTCGCAACCCTCGGTCCGGTCCGATATTAGACTCAAAATGAACTCCATAT
131 TACTGCCGCAACCCTCGGTCCGGTCCGATATTAGACTCAAAATGAACTCCATAT
* * **
11145893 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGACGTTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACACTCA
11145957 GTCGACCAGAGAGGCAG
65 GTCGACCAGAGAGGCAG
11145974 GATGCGTAAG
Statistics
Matches: 219, Mismatches: 36, Indels: 12
0.82 0.13 0.04
Matches are distributed among these distances:
175 1 0.00
176 50 0.23
178 1 0.00
179 1 0.00
180 4 0.02
183 2 0.01
184 160 0.73
ACGTcount: A:0.27, C:0.29, G:0.26, T:0.19
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGACACTCAG
TCGACCAGAGAGGCAGAAAGCACAAGCTGGGGACCGACCCAATCCCCCCTACATGCTGCCGATAC
TACTGCCGCAACCCTCGGTCCGGTCCGATATTAGACTCAAAATGAACTCCATAT
Found at i:11146639 original size:26 final size:26
Alignment explanation
Indices: 11146601--11146653 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11146591 GGCTCAAACT
11146601 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11146627 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
11146653 C
1 C
11146654 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11146981 original size:159 final size:156
Alignment explanation
Indices: 11146626--11147406 Score: 514
Period size: 159 Copynumber: 4.9 Consensus size: 156
11146616 AACTCCGTAT
** * * * * ** *
11146626 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAATGAGCGTGCGGGCGTTTAG
1 GCTTAGACATGGAATGAAC-CCCAATGCATAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
** * * * * * * * **
11146691 CCGGTCGGAGAGGCAGAATGCG-AAGCCGGGGATCAGTCGGGTCCCTCTCTA-CGTGCTGTTGAT
65 CCGACCGAAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGATCCCCCTC-AGCGTGCTGCCG-T
*** * *
11146754 CCTGCTGCTGTAACCCTCGGTCCGGTCTGA
128 CCTGCTGCCACAACCCTCGGTTC-GACTGA
* * ** * * * *
11146784 TCTTAGAC-TGGGAATGAGCTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAAC-CCCAATGCATAAGCCAACCCACGAAACGAGCATGCGGGCACTCA
* * * ** *
11146848 GCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCTTTCGGCGTGCTGCCAGT
64 GCCGACCGAAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGATCCCCCTCAGCGTGCTGCC-GT
* * * *
11146913 CCTGCTGGCACAGCCCTGGGTTCGACTGGG
128 CCTGCTGCCACAACCCTCGGTTCGACT-GA
* * * * *
11146943 GCTTAGACATGGAATCAACGCCCAATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAAC-CCCAATGCATAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
* ** * **
11147008 CCGACCGGAGAGGCAGAATACGCAAGCATGGGATCGGCCCGATCCCCCCCAGCGTGCTATCGATC
65 CCGACCGAAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGATCCCCCTCAGCGTGCTGCCG-TC
* *
11147073 CTGCTACCGCAACCCTCGG-TCTGATCTGA
129 CTGCTGCCACAACCCTCGGTTC-GA-CTGA
* * * * * * * * *** *
11147102 TCTTAGAC-TGGGAATGAACTCCGATGCATAAGTCATCCCACAAAATGAGCGTGCGGTTGCTGAG
1 GCTTAGACAT-GGAATGAACCCCAATGCATAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
* * * * * *
11147166 CCGACCGAAGAGGTATAATACGCAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGTTGCCGGTC
65 CCGACCGAAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGATCCCCCTCAGCGTGCTGCC-GTC
* * *
11147231 CCGCTGCCACAACCCTCAGTTCGGCTAGA
129 CTGCTGCCACAACCCTCGGTTCGACT-GA
* * * * *
11147260 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATACGGGCACTCAG
1 GCTTAGACATGGAATGAAC-CCCAATGCATAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
* * ** * * ** *
11147325 TCGACC-AGATAGGCAGAATGTGCAAGCCGGGGATCGGCTCGGTCCCCCT-TTCGTGCTACCGAT
65 CCGACCGA-AGAGGCAGAATACGCAAGCCGGGGATCGGCCCGATCCCCCTCAGCGTGCTGCCG-T
* *
11147388 CCTGCTACCGCAACCCTCG
128 CCTGCTGCCACAACCCTCG
11147407 ATCTGATCCG
Statistics
Matches: 485, Mismatches: 121, Indels: 34
0.76 0.19 0.05
Matches are distributed among these distances:
157 4 0.01
158 223 0.46
159 254 0.52
160 4 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACCCCAATGCATAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGC
CGACCGAAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGATCCCCCTCAGCGTGCTGCCGTCCT
GCTGCCACAACCCTCGGTTCGACTGA
Found at i:11147201 original size:317 final size:317
Alignment explanation
Indices: 11146626--11147445 Score: 1014
Period size: 317 Copynumber: 2.6 Consensus size: 317
11146616 AACTCCGTAT
* * * * * * * *
11146626 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAATGAGCGTGCGGGCGTTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAG
** * * * * * *
11146691 CCGGTCGGAGAGGCAGAATGCG-AAGCCGGGGATCAGTCGGGTCCCTCTCTACGTGCTGTTGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCC-CCCTACGTGCTATCGATC
* * * * * *
11146755 CTGCTGCTGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAGCTCCGTATGCATAAGTCA
130 CTGCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
* * *
11146820 ACCCACGAAATGAGCGTGCGGGCACTGAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCG
195 ACCCACAAAATGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATACGCAAGCCGGGGATCG
** * * * ** * *
11146885 GCCCGATCCCTTTCGGCGTGCTGCCAGTCCTGCTGGCACAGCCCTGGGTTCGACTGGG
260 GCCCGATCCCCCTCGGCGTGCTGCCAGTCCCGCTGCCACAACCCTCAGTTCGACTAGA
* * *
11146943 GCTTAGACATGGAATCAACGCCCAATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAG
* ** * *
11147008 CCGACCGGAGAGGCAGAATACGCAAGCATGGGATCGGCCCGATCCCCCCCAGCGTGCTATCGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTA-CGTGCTATCGATC
11147073 CTGCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCG-ATGCATAAGTCA
130 CTGCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
* *** *
11147137 TCCCACAAAATGAGCGTGCGGTTGCTGAGCCGACCGAAGAGGTATAATACGCAAGCCGGGGATCG
195 ACCCACAAAATGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATACGCAAGCCGGGGATCG
* * * * * *
11147202 GCTCGGTCCCCCTCTGCGTGTTGCCGGTCCCGCTGCCACAACCCTCAGTTCGGCTAGA
260 GCCCGATCCCCCTCGGCGTGCTGCCAGTCCCGCTGCCACAACCCTCAGTTCGACTAGA
* *
11147260 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAG
* * * * * * * *
11147325 TCGACCAGATAGGCAGAATGTGCAAGCCGGGGATCGGCTCGGTCCCCCTTTCGTGCTACCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCC
* * *
11147390 TGCTACCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTTCGTATGC
131 TGCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
11147446 TTAGACTGGG
Statistics
Matches: 426, Mismatches: 74, Indels: 6
0.84 0.15 0.01
Matches are distributed among these distances:
316 61 0.14
317 291 0.68
318 74 0.17
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCC
TGCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
CCCACAAAATGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATACGCAAGCCGGGGATCGG
CCCGATCCCCCTCGGCGTGCTGCCAGTCCCGCTGCCACAACCCTCAGTTCGACTAGA
Found at i:11147212 original size:158 final size:158
Alignment explanation
Indices: 11146627--11147437 Score: 613
Period size: 158 Copynumber: 5.1 Consensus size: 158
11146617 ACTCCGTATG
* * *
11146627 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAATGAGCGTGCGGGCGTTTAGC
1 CTTAGACATGGAATGAACTCCG-ATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
** * * * * ***
11146692 CGGTCGGAGAGGCAGAATGCG-AAGCCGGGGATCAG-TCGGGTCCCTCTCTA-CGTGCTGTTGAT
65 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTC-GGTCCC-CCCCAGCGTGCTACCGAT
* * * *
11146754 CCTGCTGCTGTAACCCTCGGTCCGGTCTGAT
128 CCTGCTGCCGCAACCCTCGGTCTGATCTGAT
* * * * *
11146785 CTTAGAC-TGGGAATGAGCTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCG-ATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * *** * *
11146849 CCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCTTTCGGCGTGCTGCC-AGT
64 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCCAGCGTGCTACCGA-T
* * * * **
11146913 CCTGCTGGCACAGCCCTGGGT-TCGA-CTGGGG
128 CCTGCTGCCGCAACCCTCGGTCT-GATCT-GAT
* * * * * * *
11146944 CTTAGACATGGAATCAACGCCCAATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAAC-TCCGATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * ** * * *
11147009 CGACCGGAGAGGCAGAATACGCAAGCATGGGATCGGCCCGATCCCCCCCAGCGTGCTATCGATCC
65 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCCAGCGTGCTACCGATCC
*
11147074 TGCTACCGCAACCCTCGGTCTGATCTGAT
130 TGCTGCCGCAACCCTCGGTCTGATCTGAT
* * * * ** *
11147103 CTTAGAC-TGGGAATGAACTCCGATGCATAAGTCATCCCACAAAATGAGCGTGCGGTTGCTGAGC
1 CTTAGACAT-GGAATGAACTCCGATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * * * * *
11147167 CGACCGAAGAGGTATAATACGCAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGTTGCCGGTCC
65 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCCAGCGTGCTACCGATCC
* * * * *
11147232 CGCTGCCACAACCCTCAGT-TCG-GCTAGAG
130 TGCTGCCGCAACCCTCGGTCT-GATCT-GAT
* * * * * * * *
11147261 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATACGGGCACTCAGT
1 CTTAGACATGGAATGAACT-CCGATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * ***
11147326 CGACC-AGATAGGCAGAATGTGCAAGCCGGGGATCGGCTCGGT-CCCCCTTTCGTGCTACCGATC
65 CGACCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCCAGCGTGCTACCGATC
* * *
11147389 CTGCTACCGCAACCCTCGATCTGATCCGAT
129 CTGCTGCCGCAACCCTCGGTCTGATCTGAT
11147419 CTTAGAC-TGGGAATGAACT
1 CTTAGACAT-GGAATGAACT
11147438 TCGTATGCTT
Statistics
Matches: 505, Mismatches: 127, Indels: 42
0.75 0.19 0.06
Matches are distributed among these distances:
157 5 0.01
158 250 0.50
159 242 0.48
160 8 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
GACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCCAGCGTGCTACCGATCCT
GCTGCCGCAACCCTCGGTCTGATCTGAT
Found at i:11147471 original size:26 final size:26
Alignment explanation
Indices: 11147419--11147471 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11147409 CTGATCCGAT
* *
11147419 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGAATG
*
11147445 CTTAGACTGGGGATGAACTCCGAATG
1 CTTAGACTGGGAATGAACTCCGAATG
11147471 C
1 C
11147472 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:11147849 original size:26 final size:26
Alignment explanation
Indices: 11147811--11147863 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11147801 CCAGTCTGAT
*
11147811 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11147837 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
11147863 C
1 C
11147864 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11148342 original size:26 final size:26
Alignment explanation
Indices: 11148313--11148363 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
11148303 GGTCTGATCC
* *
11148313 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATAAACTCCGTATGCT
*
11148339 TAGACTGGGGATAAACTCCGTATGC
1 TAGACTGGGAATAAACTCCGTATGC
11148364 CTAAGTCCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATAAACTCCGTATGCT
Found at i:11149083 original size:26 final size:26
Alignment explanation
Indices: 11149046--11149097 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11149036 GCTCAAATTG
11149046 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
11149072 TTAGACAT-GGAATGAACTCTGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
11149098 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:11149824 original size:26 final size:26
Alignment explanation
Indices: 11149788--11149840 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11149778 CTGGTCCGAT
*
11149788 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
11149814 CTTAGACTGGGGATGGACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
11149840 C
1 C
11149841 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:11150027 original size:26 final size:26
Alignment explanation
Indices: 11149998--11150050 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11149988 CTGATCTGAT
*
11149998 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
11150024 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
11150050 C
1 C
11150051 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:11150451 original size:159 final size:160
Alignment explanation
Indices: 11150023--11150463 Score: 423
Period size: 159 Copynumber: 2.8 Consensus size: 160
11150013 AACTCTGTAT
*
11150023 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GAGCATGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGAGCATGCGGGCGCTCA
** * * * * *
11150087 GCCGATCGGAGAGATAGAATGCGTAAGCCAGGGATCGAGCC-GGTCCCCCCTGCATGCT-ATCGA
66 GCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGA-CCTAGTCCCCCCTGCGTGCTGTTAGA
* ** * * * *
11150150 TCCTACTGTCGCAACCCTCAGACTGGTCCGA
130 TCCCACTACCACAACCCTCAGACTCGACAGA
* * * * ** *
11150181 TCTTAGA-TTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAAC-GAGTGTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGAGCATGCGGGCGCTC
* * * * ** * * *
11150244 AGTCGGTCGAAGAGGCATAATATGCAAGCCAGGGA-CCAGCTCAGTCCCCCTCTGCGTTCTGTTA
65 AGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCT-AGTCCCCC-CTGCGTGCTGTTA
* ** *
11150308 G-TCCCACTACCACAACCCT-TGGTTCGACTAGG
128 GATCCCACTACCACAACCCTCAGACTCGAC-AGA
* *
11150340 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAG-GCATGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGAGCATGCGGGCGCTCA
* *
11150404 GCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTACTCCCCCCTGCGTGCTGT
66 GCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTAGTCCCCCCTGCGTGCTGT
11150464 CGATCCTGCT
Statistics
Matches: 219, Mismatches: 55, Indels: 18
0.75 0.19 0.06
Matches are distributed among these distances:
156 1 0.00
157 3 0.01
158 100 0.46
159 107 0.49
160 8 0.04
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGAGCATGCGGGCGCTCA
GCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTAGTCCCCCCTGCGTGCTGTTAGAT
CCCACTACCACAACCCTCAGACTCGACAGA
Found at i:11150528 original size:26 final size:26
Alignment explanation
Indices: 11150499--11150551 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11150489 CTGGTCCAAT
11150499 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
11150525 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
11150551 C
1 C
11150552 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:11152092 original size:26 final size:26
Alignment explanation
Indices: 11152054--11152106 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11152044 CCAAACAGAT
11152054 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11152080 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
11152106 C
1 C
11152107 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11152381 original size:159 final size:158
Alignment explanation
Indices: 11152080--11152885 Score: 625
Period size: 159 Copynumber: 5.2 Consensus size: 158
11152070 ACTCCGTATG
* * *
11152080 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCTAGGAAACGAGCGTGCGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
11152144 CCGGTTGGAGAGGTAGAATGCGTC-AGCTGGGGATCGGCCCGGTCCCCACT-TGGGTGCTGTCGA
65 CCGG-TGAAGAGGCAGAATGCG-CAAGCCGGGGATCGGCCCGGTCCCC-CTCTGCGTGCTGTCGA
*
11152207 TCCTGCTGCCGCAACCCTCGATCCGATCTGAT
127 TCCTGCTGCCACAACCCTCGATCCGATCTGAT
* * * *
11152239 CTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
11152304 CGGCTGAAAAGGCATAATGCGCAAGCCAGGGATCGGCTCGATCCCCCTCTGTGTGCTGTCGGTCC
66 CGG-TGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * **
11152369 CGCTACCACAACCCTTGATCCG-GCTAGGG
130 TGCTGCCACAACCCTCGATCCGATCT-GAT
* * * *
11152398 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCTAACCCATG-AA--A-----C-GG-G--CAT
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
11152450 CC-G-G-AGAGGCCGAATGCGTAAGTCAGGGATCGACTCGGTCTCCGC-CTACGTGCTGTCGATC
65 CCGGTGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTC-CCCCTCTGCGTGCTGTCGATC
* * * * *
11152511 CTGCTGCCGCAACCCTTGGTTCGATCCGAT
129 CTGCTGCCACAACCCTCGATCCGATCTGAT
* * * * * * *
11152541 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTACGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * * * *
11152606 CTGCCAGAGAGGCATAACGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTACCTACTG-CCAGTC
66 CGGTGA-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGA-TC
* * * * **
11152670 CCGCTACCACAACCCTCGGTCCGGT-TGGGG
129 CTGCTGCCACAACCCTCGATCCGATCT-GAT
** * * *
11152700 CTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
11152765 TGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGCCGATCC
66 CGGT-GAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
* * * *
11152829 TGCTGCCACAACCCTCAGTTCGGTTCCGAT
130 TGCTGCCACAACCCTC-GATCCGATCTGAT
11152859 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
11152886 TTAGACGGGG
Statistics
Matches: 500, Mismatches: 116, Indels: 62
0.74 0.17 0.09
Matches are distributed among these distances:
142 1 0.00
143 98 0.20
144 7 0.01
146 2 0.00
147 3 0.01
149 1 0.00
150 2 0.00
151 2 0.00
152 2 0.00
153 1 0.00
155 3 0.01
156 2 0.00
158 37 0.07
159 338 0.68
160 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGTGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGATCCGATCTGAT
Found at i:11152703 original size:302 final size:307
Alignment explanation
Indices: 11152173--11152885 Score: 828
Period size: 302 Copynumber: 2.3 Consensus size: 307
11152163 GCGTCAGCTG
* * ** * * *
11152173 GGGATCGGCCCGGTCCCCACTTGGGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGATCTGA
1 GGGATCGACCCGGTCCCC-CCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTTCGATCCGA
* *
11152238 TCTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTGAG
65 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTGAG
* * * * *** * * *
11152303 CCGGCTGAAAAGGCATAATGCGCAAGCCAGGGATCGGCTCGATCCCCCTCTGTGTGCTGTCGGTC
130 CCGCCAGAAAAGGCATAACGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTACCTACTGCCAGTC
* * *
11152368 CCGCTACCACAACCCTTGATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTA
195 CCGCTACCACAACCCTCGATCCGGCTAGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCA
* * *
11152433 ACCCATGAAAC-G-G-GCA-T-C-CGGAGAGGCCGAATGCGTAAGTCA
260 ACCCACGAAACGGCGTGCAGTACGCGGAGAGGCAGAATGCGCAAGTCA
* * *
11152475 GGGATCGACTCGGTCTCCGCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTTCGATCCGA
1 GGGATCGACCCGGTC-CCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTTCGATCCGA
* ** * *
11152540 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTACGGGCGTTGAG
65 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTGAG
* ** *
11152605 CCTGCCAG-AGAGGCATAACGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTACCTACTGCCAGT
130 CC-GCCAGAAAAGGCATAACGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTACCTACTGCCAGT
* * *
11152669 CCCGCTACCACAACCCTCGGTCCGGTTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCC
194 CCCGCTACCACAACCCTCGATCCGGCTAGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCC
*
11152734 AACCCACGAAACGGGCGTGCAGGCGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAGTCG
259 AACCCACGAAAC-GGCGTGCA---G-T-A-C--G-CGGAGAGGCAGAATGCGCAAGTCA
* * * * * *
11152793 GGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCAGTTCGGTTCCGA
1 GGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTTC-GATCCGA
11152858 TCTTAGACTGGGAATGAACTCCGTATGC
65 TCTTAGACTGGGAATGAACTCCGTATGC
11152886 TTAGACGGGG
Statistics
Matches: 342, Mismatches: 50, Indels: 22
0.83 0.12 0.05
Matches are distributed among these distances:
302 226 0.66
303 5 0.01
304 1 0.00
305 1 0.00
306 3 0.01
311 1 0.00
314 1 0.00
317 36 0.11
318 68 0.20
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.19
Consensus pattern (307 bp):
GGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTTCGATCCGAT
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTGAGC
CGCCAGAAAAGGCATAACGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTACCTACTGCCAGTCC
CGCTACCACAACCCTCGATCCGGCTAGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGGCGTGCAGTACGCGGAGAGGCAGAATGCGCAAGTCA
Found at i:11152888 original size:26 final size:26
Alignment explanation
Indices: 11152859--11152911 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11152849 CGGTTCCGAT
* *
11152859 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCCTATG
*
11152885 CTTAGACGGGGGATGAACTCCCTATG
1 CTTAGACGGGGAATGAACTCCCTATG
11152911 C
1 C
11152912 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCCTATG
Found at i:11153234 original size:171 final size:172
Alignment explanation
Indices: 11152884--11153246 Score: 399
Period size: 171 Copynumber: 2.1 Consensus size: 172
11152874 AACTCCGTAT
* * * * *
11152884 GCTTAGACGGGGGATGAACTCCCTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAACGTGCAGGCACTCAG
** * * * * * *
11152949 TCCGGTCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCTGATCCCCCTCTGCGTGCTACCGAT
66 TCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCCTGCATGATACCAAT
* * *
11153014 CCTACTGTCGGTCTTGCTGCCACAACCCTTAGTCCGGCTGGG
131 CCTACTGTCGGTCTTGCTACCACAACCCTTAGTCCGGCTCGA
** * **
11153056 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAATGTGTGGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAACGTGCAGGCACTCA
* * * * *
11153120 G-CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCTGTATGATGCCAA
65 GTCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCCTGCATGATACCAA
** * * *
11153184 TCCTGTTG-CTGGTCTTGCTACCACAACCCTTGGTCTGGTTCGA
130 TCCTACTGTC-GGTCTTGCTACCACAACCCTTAGTCCGGCTCGA
*
11153227 TCTTAGACTGGGAATGAACT
1 GCTTAGACTGGGAATGAACT
11153247 TCATATGCTT
Statistics
Matches: 156, Mismatches: 32, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
170 2 0.01
171 100 0.64
172 54 0.35
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (172 bp):
GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAACGTGCAGGCACTCAG
TCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCCTGCATGATACCAAT
CCTACTGTCGGTCTTGCTACCACAACCCTTAGTCCGGCTCGA
Found at i:11153279 original size:26 final size:26
Alignment explanation
Indices: 11153228--11153280 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
11153218 CTGGTTCGAT
* *
11153228 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAAATCCATATG
*
11153254 CTTAGACAT-GGAATGAAATCCGTATG
1 CTTAGAC-TGGGAATGAAATCCATATG
11153280 C
1 C
11153281 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:11154153 original size:26 final size:26
Alignment explanation
Indices: 11154124--11154193 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
11154114 TCTTACATTG
11154124 GGAATGAACTCCGTATGCTTAGACAA
1 GGAATGAACTCCGTATGCTTAGACAA
*
11154150 GGAATGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAA
11154176 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
11154194 CTAAGCCAAC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGACAA
Found at i:11154366 original size:26 final size:26
Alignment explanation
Indices: 11154337--11154389 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11154327 TCGATCCGAT
11154337 CTTAGAC-TGGGAATAAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
*
11154363 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
11154389 C
1 C
11154390 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:11154855 original size:158 final size:157
Alignment explanation
Indices: 11154671--11155172 Score: 402
Period size: 158 Copynumber: 3.2 Consensus size: 157
11154661 CCGGCTGGGG
*
11154671 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCTCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTCTCAGC
*
11154736 CGACCGAAGAGGCAGAATGTGTCAACTGGGGATCAGTCC-GATCCCCCCTGCGTGCTGTCGATCC
66 CGACCGAAGAGGCAGAATG-G-CAACTGGGGATCAGACCTGATCCCCCCTGCGTGCTGTCGATCC
*
11154800 TACTGCCACAACCCTCGGTCCGGTCTGAT
129 TGCTGCCACAACCCTCGGTCCGGTCTGAT
* * * * *
11154829 CTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTCCGGGCGT-TGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-TCTCA
* * * ** * * *
11154892 GCCCG-CCGAAGAGGCACAATGCACAAGTCAAGGATC-GGCCTGGTCCCCCTCTACGTGCTG-CT
64 G-CCGACCGAAGAGGCAGAATG-GCAACT-GGGGATCAGACCTGATCCCCC-CTGCGTGCTGTC-
* * * * *
11154954 GGTCCGGCTGCCACAACCCTTGGTTCGGT-TGGGGT
124 GATCCTGCTGCCACAACCCTCGGTCCGGTCT--GAT
* *
11154989 -TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA-GAAAACG-GACATGCGGG-TGCTC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG-AAACGAG-CGTGCGGGCT-CTC
* * * * * * * *
11155050 AGCCGGCCGGAGAGGTAGAATGCGCAAGTCGAGGATCA-ACC-CAGTCCCCCATGCGTGTTGTCG
63 AGCCGACCGAAGAGGCAGAATG-GCAACT-GGGGATCAGACCTGA-TCCCCCCTGCGTGCTGTCG
* ** * * *
11155113 ATCCTGTTATCATAACCTTCGATCCGGTCTGAT
125 ATCCTGCTGCCACAACCCTCGGTCCGGTCTGAT
*
11155146 CATAGAC-TAGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
11155173 TTATACTGGA
Statistics
Matches: 272, Mismatches: 51, Indels: 42
0.75 0.14 0.12
Matches are distributed among these distances:
157 12 0.04
158 136 0.50
159 121 0.44
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTCTCAGC
CGACCGAAGAGGCAGAATGGCAACTGGGGATCAGACCTGATCCCCCCTGCGTGCTGTCGATCCTG
CTGCCACAACCCTCGGTCCGGTCTGAT
Found at i:11154941 original size:308 final size:308
Alignment explanation
Indices: 11154362--11155172 Score: 753
Period size: 308 Copynumber: 2.6 Consensus size: 308
11154352 AACTCCGTAT
* * *
11154362 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-GAAACGAGCGTGCGGGCTCTCAG
* * ** * * * * *
11154427 TCGGCC-AGAGAGGTAGAATGCACAAGCCAGGGAT-TGGCCTGAGCCCCCCTGCGTACTGTCAAT
65 CCGGCCGA-AGAGGTAGAATG-GCAA-CTGGGGATCAGACC-GATCCCCCCTGCGTGCTGTCGAT
* * * * * *
11154490 CATGCTACCACAACCCTCGATCCGGTCTAATCTTAGACTGGGGATGAACTTCGTATGCCTAAGGC
126 CCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAGGC
** * * ** * * * * * **
11154555 AACCCATGAAATGAGGGTGTGGGCGATCAATCGATCGGAGAGGCATAATGCGCAAGCTGGGGATC
191 AACCCACAAAACGAGCGTCCGGGCGATCAACCGACCGAAGAGGCACAATGCACAAGCTAAGGATC
* *
11154620 AACCTGATCCCCCTCTGCTTGCTG-TCGATCCCGCTG-C-A-GGTCCGGCTGGG
256 AACCTGATCCCCCTCTACGTGCTGCT-GATCCCGCTGCCAACGGTCCGGCTGGG
*
11154670 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCTCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-GAAACGAGCGTGCGGGCTCTCAG
* * *
11154735 CCGACCGAAGAGGCAGAATGTGTCAACTGGGGATCAGTCCGATCCCCCCTGCGTGCTGTCGATCC
65 CCGGCCGAAGAGGTAGAATG-G-CAACTGGGGATCAGACCGATCCCCCCTGCGTGCTGTCGATCC
* * * *
11154800 TACTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAA
128 TGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAGGCAA
* * *
11154865 CCCACAAAACGAGCGTCCGGGCGTTGAGCCCG-CCGAAGAGGCACAATGCACAAG-TCAAGGATC
193 CCCACAAAACGAGCGTCCGGGCGATCA-ACCGACCGAAGAGGCACAATGCACAAGCT-AAGGATC
** * * * * *
11154928 GGCCTGGTCCCCCTCTACGTGCTGCTGGTCCGGCTGCCACAACCCTTGGTTCGGTTGGG
256 AACCTGATCCCCCTCTACGTGCTGCTGATCCCGCTG-C-CAA--C--GGTCCGGCTGGG
* * *
11154987 GTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAGAAAACG-GACATGCGGG-TGCTC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAG-AAACGAG-CGTGCGGGCT-CTC
* * * * * *
11155050 AGCCGGCCGGAGAGGTAGAATGCGCAAGTCGAGGATCA-ACCCAGTCCCCCATGCGTGTTGTCGA
63 AGCCGGCCGAAGAGGTAGAATG-GCAACT-GGGGATCAGACCGA-TCCCCCCTGCGTGCTGTCGA
* * * * *
11155114 TCCTGTTATCATAACCTTCGATCCGGTCTGATCATAGACTAGGAATGAACTCCGTATGC
125 TCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGC
11155173 TTATACTGGA
Statistics
Matches: 409, Mismatches: 74, Indels: 31
0.80 0.14 0.06
Matches are distributed among these distances:
307 1 0.00
308 227 0.56
309 10 0.02
311 1 0.00
312 1 0.00
316 10 0.02
317 159 0.39
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (308 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGAAACGAGCGTGCGGGCTCTCAGC
CGGCCGAAGAGGTAGAATGGCAACTGGGGATCAGACCGATCCCCCCTGCGTGCTGTCGATCCTGC
TACCACAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAGGCAACCC
ACAAAACGAGCGTCCGGGCGATCAACCGACCGAAGAGGCACAATGCACAAGCTAAGGATCAACCT
GATCCCCCTCTACGTGCTGCTGATCCCGCTGCCAACGGTCCGGCTGGG
Found at i:11155025 original size:159 final size:159
Alignment explanation
Indices: 11154658--11155034 Score: 405
Period size: 158 Copynumber: 2.4 Consensus size: 159
11154648 TCCCGCTGCA
* *
11154658 GGTCCGG-CTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG
1 GGTCCGGTCTGGGGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCG
* ** ** * *
11154722 TACGGGCTCTCAGCCGACCGAAGAGGCAGAATGTGTCAACTGGGGATCAGTCCGATCCCCCCTGC
66 TACGGGCTCTCAGCCGACCGAAGAGGCACAATGTCACAACTAAGGATCAGGCCGATCCCCCCTAC
*
11154787 GTGCTGTCGATCCTACTGCCACAACCCTC
131 GTGCTGTCGATCCGACTGCCACAACCCTC
* * *
11154816 GGTCCGGTCT--GATCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAG
1 GGTCCGGTCTGGGGT-TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAG
* * * *
11154878 CGTCCGGGCGT-TGAGCCCG-CCGAAGAGGCACAATG-CACAAGTCAAGGATC-GGCCTGGTCCC
64 CGTACGGGC-TCTCAG-CCGACCGAAGAGGCACAATGTCACAACT-AAGGATCAGGCC-GATCCC
* * *
11154939 CCTCTACGTGCTG-CTGGTCCGGCTGCCACAACCCTT
125 CC-CTACGTGCTGTC-GATCCGACTGCCACAACCCTC
* * *
11154975 GGTTCGGT-TGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAGAAAACG
1 GGTCCGGTCTGGGGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACG
11155035 GACATGCGGG
Statistics
Matches: 181, Mismatches: 26, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
157 9 0.05
158 90 0.50
159 79 0.44
160 3 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
GGTCCGGTCTGGGGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCG
TACGGGCTCTCAGCCGACCGAAGAGGCACAATGTCACAACTAAGGATCAGGCCGATCCCCCCTAC
GTGCTGTCGATCCGACTGCCACAACCCTC
Found at i:11155097 original size:159 final size:158
Alignment explanation
Indices: 11154658--11155116 Score: 434
Period size: 159 Copynumber: 2.9 Consensus size: 158
11154648 TCCCGCTGCA
*
11154658 GGTCCGG-CTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG-AAACGAGC
1 GGTCCGGTCTGGGGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-GAAAACGAGC
* * * * *
11154721 GTACGGGCT-CTCAGCCGACCGAAGAGGCAGAATGTGTCAACT-GGGGATCAGTCCGATCCCCCC
65 GTACGGG-TGCTCAGCCGGCCGAAGAGGCAGAATGCG-CAAGTCGAGGATCAGCCCG-TCCCCCC
* *
11154784 TGCGTGCTGTCGATCCTACTGCCACAACCCTC
127 TACGTGCTGTCGATCCGACTGCCACAACCCTC
* * * *
11154816 GGTCCGGTCT--GATCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAG
1 GGTCCGGTCTGGGGT-TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAGAAAACGAG
* * * * * * * * * *
11154878 CGTCCGGGCGTTGAGCCCGCCGAAGAGGCACAATGCACAAGTCAAGGATCGGCCTGGTCCCCCTC
64 CGTACGGGTGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGTCGAGGATCAGCC-CGTCCCCC-C
* * *
11154943 TACGTGCTG-CTGGTCCGGCTGCCACAACCCTT
127 TACGTGCTGTC-GATCCGACTGCCACAACCCTC
* *
11154975 GGTTCGGT-TGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAGAAAACG-GAC
1 GGTCCGGTCTGGGGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGAAAACGAG-C
* * * * * * *
11155038 ATGCGGGTGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGTCGAGGATCAACCCAGTCCCCCATG
65 GTACGGGTGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGTCGAGGATCAGCCC-GTCCCCCCTA
*
11155103 CGTGTTGTCGATCC
129 CGTGCTGTCGATCC
11155117 TGTTATCATA
Statistics
Matches: 237, Mismatches: 49, Indels: 30
0.75 0.16 0.09
Matches are distributed among these distances:
157 6 0.03
158 103 0.43
159 125 0.53
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GGTCCGGTCTGGGGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGAAAACGAGCG
TACGGGTGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCGTCCCCCCTACG
TGCTGTCGATCCGACTGCCACAACCCTC
Found at i:11155910 original size:159 final size:154
Alignment explanation
Indices: 11155551--11156118 Score: 523
Period size: 159 Copynumber: 3.7 Consensus size: 154
11155541 AACTTCGTAT
*
11155551 GCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGTGCGGGCG
1 GCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACG-AA--A-CGAGCGTGCGGGCG
* * * * *
11155615 CTCAGCCGA-CTGGAAAGGCAGAATGCACAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGT
61 CTCAGCCGATC-GGAGAGGCAAAATGCGCAAGCCGGGGATCG-GCCAGTCCCCCCTGCGTGCTGT
* * * * *
11155679 CGGTCCTGATGCCACAACCCTTGCTCCGATCTGA
124 C-GTCCCG-TGCCATAACCCTTGGTCTG-GCTGA
* * * * * * * *
11155713 TCTTAGACTGGGAATGAACTTCGTATGACTAAGTCAACCCAAGAAACGAGCGTGCGGGCGTTGAG
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
11155778 CTGATCGGAGAGGCAAAATGCGCAAGCCGGGGATTGGTCCAGTCCCCCTCTGCGTGCTGTCGATC
66 CCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGG-CCAGTCCCCC-CTGCGTGCTGTCG-TC
* *
11155843 CCGTTGCCATAACCCTCGGTCTGGCTGGG
128 CCG-TGCCATAACCCTTGGTCTGGCT-GA
* * * * * *
11155872 GCTTAGACGT-GGAATGAACTCCCTATGCTTAAGCCAACCCACGAAACGGGTGTACGGGTGCTCA
1 GCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
11155936 ACTGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCTGTCCCCCCTGCGTGC--T-G--C
65 GCCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGC-CAGTCCCCCCTGCGTGCTGTCGTCC
11155996 C--G---TAACCCTTGGTCTGGTCTGA
129 CGTGCCATAACCCTTGGTCTGG-CTGA
* * *
11156018 TCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
11156083 CCGACCAGAGAGGCAAGATGCGCAAGCCGGGGATCG
66 CCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCG
11156119 AATGGGTGGT
Statistics
Matches: 338, Mismatches: 58, Indels: 36
0.78 0.13 0.08
Matches are distributed among these distances:
145 1 0.00
146 100 0.30
147 2 0.01
149 1 0.00
152 2 0.01
155 1 0.00
156 1 0.00
158 67 0.20
159 124 0.37
160 1 0.00
161 2 0.01
162 36 0.11
ACGTcount: A:0.23, C:0.29, G:0.30, T:0.19
Consensus pattern (154 bp):
GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCAGTCCCCCCTGCGTGCTGTCGTCCCG
TGCCATAACCCTTGGTCTGGCTGA
Found at i:11156116 original size:146 final size:146
Alignment explanation
Indices: 11155847--11156118 Score: 361
Period size: 146 Copynumber: 1.9 Consensus size: 146
11155837 TCGATCCCGT
* *
11155847 TGCCATAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGAACTCCCTATGCTTAAGCCAACCC
1 TGCCATAACCCTCGGTCTGGCTGGAGCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCC
* * * * * *
11155912 ACGAAACGGGTGTACGGGTGCTCAACTGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTC
66 ACGAAACGAGTGTACGGGCGCTCAACCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTC
11155977 TGTCCCCCCTGCGTGC
131 TGTCCCCCCTGCGTGC
* * * * *
11155993 TGCCGTAACCCTTGGTCTGGTCT-GATCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAAC
1 TGCCATAACCCTCGGTCTGG-CTGGAGCTTAGACGT-GGAATGAACTCCCTATGCCTAAGCCAAC
* *
11156056 CCACGAAACGAGTGTGCGGGCGCTCAGCCGACCAGAGAGGCA-AGATGCGCAAGCCGGGGATCG
64 CCACGAAACGAGTGTACGGGCGCTCAACCGACCAGAGAGGCAGA-ATGCGCAAGCCGGGGATCG
11156119 AATGGGTGGT
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
145 2 0.02
146 104 0.96
147 2 0.02
ACGTcount: A:0.22, C:0.28, G:0.31, T:0.19
Consensus pattern (146 bp):
TGCCATAACCCTCGGTCTGGCTGGAGCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCC
ACGAAACGAGTGTACGGGCGCTCAACCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTC
TGTCCCCCCTGCGTGC
Found at i:11156493 original size:12 final size:12
Alignment explanation
Indices: 11156476--11156507 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
11156466 TGAGGGATAG
11156476 GGGGCCAATATA
1 GGGGCCAATATA
11156488 GGGGCCAATATA
1 GGGGCCAATATA
*
11156500 AGGGCCAA
1 GGGGCCAA
11156508 GTACTAGCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.19, G:0.34, T:0.12
Consensus pattern (12 bp):
GGGGCCAATATA
Found at i:11157196 original size:158 final size:158
Alignment explanation
Indices: 11156949--11157315 Score: 486
Period size: 158 Copynumber: 2.3 Consensus size: 158
11156939 AGTAAGTCGA
* * * * **
11156949 GGATCGACCCGGTCCCCCTCTG-CGTGCTGCCGGTCTCGCTGCCACAACCCTCTGTCCGGCTTTG
1 GGATCGGCCCGGTCCCCC-C-GACGTGCTGCCGATCCCGCTGCCACAACCCTCTGTCCAGCTGGG
* * * *
11157013 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACTAAACGGGCGTGCGGGCGCTCAT
64 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGGGCGGGCGCTCAG
* *
11157078 CCGACCGGAGAGGTAGAATGTGCAAGCCAG
129 CCGACCGGAGAGGCAGAATGCGCAAGCCAG
* *
11157108 GGATCGGCCCGGTCCCCCCGACGTGCTGCCAATCCCACTGCCACAACCCTC-GATCCAGCTGGGG
1 GGATCGGCCCGGTCCCCCCGACGTGCTGCCGATCCCGCTGCCACAACCCTCTG-TCCAGCTGGGG
*
11157172 CTTAGACATGGAATGAACTGCCTATGCCTAAGCCAACCCACGAAACGGGAGGGCGGGCGCTCAGC
65 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGGGCGGGCGCTCAGC
** * *
11157237 CGGTCGGAGAGGCAGAATGCGTAAGTCAG
130 CGACCGGAGAGGCAGAATGCGCAAGCCAG
* * * *
11157266 GGATTGGCCCGGTCCCCCCTACGTGCTGCCGATCCTGCTGCCGCAACCCT
1 GGATCGGCCCGGTCCCCCCGACGTGCTGCCGATCCCGCTGCCACAACCCT
11157316 TGGTCCGGTC
Statistics
Matches: 181, Mismatches: 25, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
157 2 0.01
158 162 0.90
159 17 0.09
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.17
Consensus pattern (158 bp):
GGATCGGCCCGGTCCCCCCGACGTGCTGCCGATCCCGCTGCCACAACCCTCTGTCCAGCTGGGGC
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGGGCGGGCGCTCAGCC
GACCGGAGAGGCAGAATGCGCAAGCCAG
Found at i:11157334 original size:158 final size:158
Alignment explanation
Indices: 11156695--11157356 Score: 588
Period size: 159 Copynumber: 4.2 Consensus size: 158
11156685 AACTCCATAT
* * * * *
11156695 GCTTAGACATGGAATGAACTCCGTATACCTATGCCAACCTACGAAATGAGCA-TGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-GGAGTGCGGGCGCTCA
* * * * * * * *
11156759 GCCGGTCGGAGAGGTAGATTGTGCAAGTCGGGGATCGACTCGGTCCCCAACTATGTGCTGTCGAT
65 GCCGATCGGAGAGGCAGAATGTGCAAGTCAGGGATCGACCCGGTCCCC-CCTACGTGCTGCCGAT
** ** * * *
11156824 CCTGCTATCGTAACCCTCAATCTGATCTGA
129 CCTGCTGCCACAACCCTCGATCCGGTCTGA
* * * * * * * *
11156854 TCTTAGATC-GGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTACGGGCGCTGC
1 GCTTAGA-CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGCGCT-C
* * * ** * *
11156918 -GCCGATCGAAGTGGCATAATAAGTAAGTC-GAGGATCGACCCGGTCCCCCTCTGCGTGCTGCCG
64 AGCCGATCGGAGAGGCAGAATGTGCAAGTCAG-GGATCGACCCGGTCCCCC-CTACGTGCTGCCG
* *
11156981 GT-CTCGCTGCCACAACCCTCTG-TCCGGCTTTG-
127 ATCCT-GCTGCCACAACCCTC-GATCCGG-TCTGA
* * * *
11157013 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACTAAACGGGCGTGCGGGCGCTCAT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGCGCTCAG
* * * * * *
11157078 CCGACCGGAGAGGTAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCCCCGACGTGCTGCCAATCC
66 CCGATCGGAGAGGCAGAATGTGCAAGTCAGGGATCGACCCGGTCCCCCCTACGTGCTGCCGATCC
** * *
11157143 CACTGCCACAACCCTCGATCCAG-CTGGG
131 TGCTGCCACAACCCTCGATCCGGTCT-GA
*
11157171 GCTTAGACATGGAATGAACTGCC-TATGCCTAAGCCAACCCACGAAACGGGAGGGCGGGCGCTCA
1 GCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGCGCTCA
* * * * *
11157235 GCCGGTCGGAGAGGCAGAATGCGTAAGTCAGGGATTGGCCCGGTCCCCCCTACGTGCTGCCGATC
65 GCCGATCGGAGAGGCAGAATGTGCAAGTCAGGGATCGACCCGGTCCCCCCTACGTGCTGCCGATC
* * * *
11157300 CTGCTGCCGCAACCCTTGGTCCGGTCCGA
130 CTGCTGCCACAACCCTCGATCCGGTCTGA
*
11157329 TCTTAGAC-TGGAAATGAACTCCGTATGC
1 GCTTAGACATGG-AATGAACTCCGTATGC
11157357 TTAGATTGGG
Statistics
Matches: 400, Mismatches: 84, Indels: 39
0.76 0.16 0.07
Matches are distributed among these distances:
156 1 0.00
157 7 0.02
158 186 0.47
159 200 0.50
160 6 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGCGCTCAG
CCGATCGGAGAGGCAGAATGTGCAAGTCAGGGATCGACCCGGTCCCCCCTACGTGCTGCCGATCC
TGCTGCCACAACCCTCGATCCGGTCTGA
Found at i:11157359 original size:26 final size:26
Alignment explanation
Indices: 11157330--11157382 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11157320 CCGGTCCGAT
11157330 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
* ** *
11157356 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
11157382 C
1 C
11157383 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:11157749 original size:26 final size:26
Alignment explanation
Indices: 11157711--11157763 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11157701 CCAGTCCAAT
*
11157711 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11157737 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
11157763 C
1 C
11157764 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11158249 original size:158 final size:155
Alignment explanation
Indices: 11157737--11158302 Score: 524
Period size: 158 Copynumber: 3.6 Consensus size: 155
11157727 ACTCCGTATG
* * *
11157737 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAGC
1 CTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
11157802 TGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCAATCCT
65 CGGCCGGAGAGGCAGAATGCGCAAG-CGGGGATTGGCCCAGTCCCCCCTGCGTGCTATCGATCCT
*
11157867 GCTCCTACAACCCTCGGTCCGGTCTGAT
129 GCTCC-ACAACCCTCGGTCCGGTCCGAT
* * * * * ** *
11157895 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAACGTGCGGTTGCTGAGC
1 CTTAGAAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
11157960 CGGCTGGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCAGTCCACCTCTGTGTGCTACCCG-TC
65 CGGCCGGAGAGGCAGAATGCGCAAGC-GGGGATTGGCCCAGTCC-CCCCTGCGTGCTA-TCGATC
** * * * * **
11158024 CCACTATCACAACCCTTGGTCCAG-CTGGGG
127 CTGCT-CCACAACCCTCGGTCCGGTC-CGAT
* * * * *
11158054 CTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGT
1 CTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
11158119 CGGCCGGAGAGGTAGCATGTGCACGTCGGGGATTGGCCCAGTCCCCCCTGCGTGCTATCGATCCT
65 CGGCCGGAGAGGCAGAATGCGCAAG-CGGGGATTGGCCCAGTCCCCCCTGCGTGCTATCGATCCT
* * * * *
11158184 GTTGCCGCAACCCTCGATCTGGTCCAAT
129 GCT-CCACAACCCTCGGTCCGGTCCGAT
* * *
11158212 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGAAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
11158277 CGACCAGAGAGGTAGGATGCGTAAGC
65 CGGCCGGAGAGGCAGAATGCGCAAGC
11158303 CATGGATCGA
Statistics
Matches: 322, Mismatches: 75, Indels: 23
0.77 0.18 0.05
Matches are distributed among these distances:
157 6 0.02
158 194 0.60
159 118 0.37
160 4 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (155 bp):
CTTAGAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GGCCGGAGAGGCAGAATGCGCAAGCGGGGATTGGCCCAGTCCCCCCTGCGTGCTATCGATCCTGC
TCCACAACCCTCGGTCCGGTCCGAT
Found at i:11164743 original size:11 final size:11
Alignment explanation
Indices: 11164712--11164744 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
11164702 CGGTTAGGCT
11164712 CTCCGACGATG
1 CTCCGACGATG
11164723 CTCC-AGCGATG
1 CTCCGA-CGATG
11164734 CTCCGACGATG
1 CTCCGACGATG
11164745 GTGCCCCAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 1 0.05
11 18 0.90
12 1 0.05
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:11165313 original size:26 final size:26
Alignment explanation
Indices: 11165284--11165336 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11165274 CCGATCCGAT
*
11165284 CTTAGACTGAAAATGAACTCCGTATG
1 CTTAGACTGAAAATGAACTCCATATG
***
11165310 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGAAAATGAACTCCATATG
11165336 C
1 C
11165337 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAAAATGAACTCCATATG
Found at i:11168020 original size:159 final size:156
Alignment explanation
Indices: 11167563--11168024 Score: 468
Period size: 159 Copynumber: 2.9 Consensus size: 156
11167553 CCGCTGTCGG
**
11167563 TCCTACTGCCACAACCCTTGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCAC-ATGCCTAAG
1 TCCTACTGCCACAACCCTTGGTCTGATTGGGGCTTAGACATGGAATGAACTCC-CTATGCCTAAG
* ** * *
11167627 CCAACACATGAAATGAGCGTGCGGGTGCTTAA-CCAACCGAAGAGGCAGAATGCGTAAGTAGGGC
65 CCAACCCATGAAATGAGCGTGCGGGTGC-TAAGCCGGCCGAAGAGGCAGAATGCATAAGCAGGG-
* *
11167691 ATCAGCTCGGTCCCCCCTGCTGCTATCGA
128 ATCGGCCCGGTCCCCCCTGCTGCTATCGA
** * * ** ** **
11167720 TCCTACTATCGCAACCCTCGGTCTGATCAGATCTTAGAC-TGGGAATGAACTCTGTATGCCTAAG
1 TCCTACTGCCACAACCCTTGGTCTGATTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAG
* * * * * *
11167784 TCAACCCATGAAACGAGCGTGCGGGCGCTAAGCCGGCC-AGAGAGGCATAATGCACAAGCCGAGG
65 CCAACCCATGAAATGAGCGTGCGGGTGCTAAGCCGGCCGA-AGAGGCAGAATGCATAAGCAG-GG
* *
11167848 ATCGGCCTGGTCCCCCTCTGCATGCTGTC-A
128 ATCGGCCCGGTCCCCC-CTGC-TGCTATCGA
* * *
11167878 GT-CTCGCTGCCACAACCCTTAGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
1 -TCCT-ACTGCCACAACCCTTGGTCTGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* * * *
11167942 GCCAACCCACGAAATGGGCGTGTGGGTGCTCAGCCGGCCGAAGAGGCAGAATGCATAAGCAAGGG
64 GCCAACCCATGAAATGAGCGTGCGGGTGCTAAGCCGGCCGAAGAGGCAGAATGCATAAGC-AGGG
*
11168007 ATCGGCCCAGTCCCCCCT
128 ATCGGCCCGGTCCCCCCT
11168025 ACGTGCTGCC
Statistics
Matches: 241, Mismatches: 52, Indels: 23
0.76 0.16 0.07
Matches are distributed among these distances:
156 5 0.02
157 106 0.44
158 11 0.05
159 116 0.48
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (156 bp):
TCCTACTGCCACAACCCTTGGTCTGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
CAACCCATGAAATGAGCGTGCGGGTGCTAAGCCGGCCGAAGAGGCAGAATGCATAAGCAGGGATC
GGCCCGGTCCCCCCTGCTGCTATCGA
Found at i:11168022 original size:316 final size:322
Alignment explanation
Indices: 11167433--11168024 Score: 754
Period size: 316 Copynumber: 1.8 Consensus size: 322
11167423 GCTTAAACAT
* *
11167433 GGAATGAACTCCGTGTGCCTAAGCCAACCCATGAAACGAGCCTGCGGGTGCTCAACCGGCCGAAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCCTGCGGGCGCTCAACCGGCCGAAA
* * * *
11167498 AGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCGCCTCTGCATGCTACCGATCCCGCTGTCGG
66 AGGCATAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTCTGCATGCT--CGAT--C-CAGTC-G
* * *
11167563 TCCTACTGCCACAACCCTTGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCACATGCCTAAGC
125 TCCTACTGCCACAACCCTTAGTCCGACTGGGGCTTAGACATGGAATGAACTCCACATGCCTAAGC
* * * *
11167628 CAACACATGAAATGAGCGTGCGGGTGCTTAACCAACCGAAGAGGCAGAATGCGTAAGTAGGGCAT
190 CAACACACGAAATGAGCGTGCGGGTGCTCAACCAACCGAAGAGGCAGAATGCATAAGAAGGGCAT
* *
11167693 CAGCTCGGTCCCCCCTGCTGCTATCGATCCTACTATCGCAACCCTCGGTCTGATCAGATCTTAGA
255 CAGCCCAGTCCCCCCTGCTGCTATCGATCCTACTATCGCAACCCTCGGTCTGATCAGATCTTAGA
11167758 CTG
320 CTG
* * *
11167761 GGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCT-AAGCCGGCC-AG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCCTGCGGGCGCTCAA-CCGGCCGA-
* * *
11167824 AGAGGCATAATGCACAAGCCGAGGATCGGCCTGGTCCCCCTCTGCATGCT-G-T-CAGTC-T-C-
64 AAAGGCATAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTCTGCATGCTCGATCCAGTCGTCCT
* *
11167883 GCTGCCACAACCCTTAGTCCGATTGGGGCTTAGACATGGAATGAACTCC-CTATGCCTAAGCCAA
129 ACTGCCACAACCCTTAGTCCGACTGGGGCTTAGACATGGAATGAACTCCAC-ATGCCTAAGCCAA
* * * * ** *
11167947 CCCACGAAATGGGCGTGTGGGTGCTCAGCCGGCCGAAGAGGCAGAATGCATAAGCAAGGG-ATCG
193 CACACGAAATGAGCGTGCGGGTGCTCAACCAACCGAAGAGGCAGAATGCATAAG-AAGGGCATCA
11168011 GCCCAGTCCCCCCT
257 GCCCAGTCCCCCCT
11168025 ACGTGCTGCC
Statistics
Matches: 230, Mismatches: 30, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
315 1 0.00
316 117 0.51
317 5 0.02
318 1 0.00
320 4 0.02
324 1 0.00
325 1 0.00
327 3 0.01
328 97 0.42
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (322 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCCTGCGGGCGCTCAACCGGCCGAAA
AGGCATAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTCTGCATGCTCGATCCAGTCGTCCTAC
TGCCACAACCCTTAGTCCGACTGGGGCTTAGACATGGAATGAACTCCACATGCCTAAGCCAACAC
ACGAAATGAGCGTGCGGGTGCTCAACCAACCGAAGAGGCAGAATGCATAAGAAGGGCATCAGCCC
AGTCCCCCCTGCTGCTATCGATCCTACTATCGCAACCCTCGGTCTGATCAGATCTTAGACTG
Found at i:11168045 original size:12 final size:12
Alignment explanation
Indices: 11168028--11168071 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
11168018 CCCCCCTACG
* *
11168028 TGCTGCCGATCT
1 TGCTGCCGGTCC
*
11168040 TGCTGCTGGTCC
1 TGCTGCCGGTCC
11168052 TGCTGCCGGTCC
1 TGCTGCCGGTCC
11168064 TGCTGCCG
1 TGCTGCCG
11168072 CAACCCTCGA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.02, C:0.36, G:0.32, T:0.30
Consensus pattern (12 bp):
TGCTGCCGGTCC
Found at i:11168131 original size:26 final size:26
Alignment explanation
Indices: 11168093--11168143 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11168083 CTGGTCTGAT
11168093 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11168119 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
11168144 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11168521 original size:159 final size:158
Alignment explanation
Indices: 11168244--11168608 Score: 382
Period size: 159 Copynumber: 2.3 Consensus size: 158
11168234 CCTACTATCG
* * * * * *
11168244 CAACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTATGTATGCCTAAGTCAACACACGAA
1 CAACCCTCAGTCCGGTTGGAGCTTAGACTGGGAATGAACTACGTATGCCAAAGCCAACACACGAA
* * * * * ** *
11168309 ACGAGCGTGTGGGCACTGAGCTGGGCGGAGAGGCATAATACGTAAGTCAGGGATCGGCGC-GATC
66 ACGAGCGTGCGGGCACTCAGCTAGCCGGAGAGGCAGAATACACAAGCCAGGGATCGGC-CTGATC
*
11168373 CCCATTTGCGTGTTACCAGTCCCACTGCCA
130 CCC-CTTGCGTGTTACCAGTCCCACTGCCA
* * *
11168403 CAACCCTCAGTCCGGTTGGGGCTTAGACATGGG-ATGAACTCCGTATGCCAAAGCCAACCCACGA
1 CAACCCTCAGTCCGGTTGGAGCTTAGAC-TGGGAATGAACTACGTATGCCAAAGCCAACACACGA
* *
11168467 AACG-GACGTGCGGGCACTCAGCTAGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGAT
65 AACGAG-CGTGCGGGCACTCAGCTAGCCGGAGAGGCAGAATACACAAGCCAGGGATCGGCCTGAT
* ** *
11168531 CCCCCTTGCGTGCTGT-CGA-TCCTGCTGCCG
129 CCCCCTTGCGTG-T-TACCAGTCCCACTGCCA
* * *
11168561 CAACCCTC-GATCCGGTTTGATCTTAGACTGGGAATGAACTTCGTATGC
1 CAACCCTCAG-TCCGGTTGGAGCTTAGACTGGGAATGAACTACGTATGC
11168609 TTAGACTGGG
Statistics
Matches: 171, Mismatches: 28, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
157 5 0.03
158 54 0.32
159 107 0.63
160 5 0.03
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.20
Consensus pattern (158 bp):
CAACCCTCAGTCCGGTTGGAGCTTAGACTGGGAATGAACTACGTATGCCAAAGCCAACACACGAA
ACGAGCGTGCGGGCACTCAGCTAGCCGGAGAGGCAGAATACACAAGCCAGGGATCGGCCTGATCC
CCCTTGCGTGTTACCAGTCCCACTGCCA
Found at i:11168618 original size:26 final size:26
Alignment explanation
Indices: 11168582--11168634 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11168572 CCGGTTTGAT
*
11168582 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11168608 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11168634 C
1 C
11168635 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11170470 original size:26 final size:26
Alignment explanation
Indices: 11170434--11170486 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11170424 CTAGTTTGAT
11170434 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* * *
11170460 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
11170486 C
1 C
11170487 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:11170590 original size:184 final size:190
Alignment explanation
Indices: 11170275--11170722 Score: 486
Period size: 184 Copynumber: 2.4 Consensus size: 190
11170265 ACCAGCTGGG
* * * * * *
11170275 GCTTAGACATGGAATGAACTCCCTACGCCTAAGCTAACCCATGAAACGGGCGTGCGGTTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGCGTGCGGGTGCTAAG
* * * * *
11170340 CCGGCTAGAGGGGTAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTATCGAT-C
65 CCGGCTAGAGAGGCAGAATACACAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTATCGATCC
**
11170404 -CTGCT-G-T-C-G-CAACCCTCA-GTCTAGTTTGATCTTAGACTGGGAAAGAACTCCATAT
130 GCTGCTGGCTACTGCCAACCCTCAGGTC-AGTCGGATCTTAGACTGGGAAAGAACTCCATAT
* *
11170459 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTTA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGTGCTAA
* * ** *
11170523 GCCGG-TCGGAGAGGCAGAATACGCAAGCTGGGGATCGACCC-ATCCCCCTCTACGTGCTGTCGA
64 GCCGGCT-AGAGAGGCAGAATACACAAGCCAGGGATCGACCCGATCCCCC-CTACGTGCTATCGA
* *
11170586 TCCTGCTGCTGGTCCTACTGCCACAACCCTCAGGTCGGTCGGATCTTAGACTGGGAATGAACTCC
127 TCC-GCTGCTGG--CTACTG-C-CAACCCTCAGGTCAGTCGGATCTTAGACTGGGAAAGAACTCC
11170651 ATAT
187 ATAT
* * *
11170655 TCTTAGACATGGAAAGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTAAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGTGCTAAG
11170720 CCG
65 CCG
11170723 ATCGAAAATG
Statistics
Matches: 219, Mismatches: 27, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
183 8 0.04
184 98 0.45
185 2 0.01
187 5 0.02
188 1 0.00
191 1 0.00
192 1 0.00
193 1 0.00
196 98 0.45
197 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (190 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGTGCTAAGC
CGGCTAGAGAGGCAGAATACACAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTATCGATCCG
CTGCTGGCTACTGCCAACCCTCAGGTCAGTCGGATCTTAGACTGGGAAAGAACTCCATAT
Found at i:11170754 original size:196 final size:195
Alignment explanation
Indices: 11170431--11170812 Score: 477
Period size: 196 Copynumber: 1.9 Consensus size: 195
11170421 AGTCTAGTTT
* * *
11170431 GATCTTAGACTGGGAAAGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAAAGAACTCCATATGCTTAGACTGGGAAAGAACTCCGTATGCCTAAGCCAA
* * * * *
11170496 CCCACGAAACGAGCGTGCGGGTGCTTAGCCGGTCGGAGAGGCAGAATACGCAAGCTGGGGATC-G
66 CCCACGAAACGAGCGTGCGGGTGCTAAGCCGATCGAAAAGG-AGAATACACAAGCTGGGGATCAG
** ** *
11170560 ACCC-ATCCCCCTCTACGTGCTGTCGATCCTGCTGCTGGTCCTACTGCCACAACCCTCAGGTCGG
130 -CCCGATCCCCCTCT-CGTGCTGTCGATCCCACTGCCAGTCCTACTACCACAACCCTCAGGTCGG
11170624 TCG
193 TCG
* *
11170627 GATCTTAGACTGGGAATGAACTCCATATTCTTAGACAT-GGAAAGAACTCCGTATGCCTAAGCCA
1 GATCTTAGACTGGGAAAGAACTCCATATGCTTAGAC-TGGGAAAGAACTCCGTATGCCTAAGCCA
* *
11170691 ACCCACGAAATGAGCGTGCGGGTGCTAAGCCGATCGAAAATGG-GTAATGCACAAG-TCGGGGAT
65 ACCCACGAAACGAGCGTGCGGGTGCTAAGCCGATCGAAAA-GGAG-AATACACAAGCT-GGGGAT
* * * *
11170754 CAGCCCGGTCCCTCTCTGGTGCTGTCGATCCCACTGCCAGTCCTGCTACCACAACCCTC
127 CAGCCCGATCCCCCTCTCGTGCTGTCGATCCCACTGCCAGTCCTACTACCACAACCCTC
11170813 GACCCGATTG
Statistics
Matches: 159, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
195 2 0.01
196 145 0.91
197 12 0.08
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (195 bp):
GATCTTAGACTGGGAAAGAACTCCATATGCTTAGACTGGGAAAGAACTCCGTATGCCTAAGCCAA
CCCACGAAACGAGCGTGCGGGTGCTAAGCCGATCGAAAAGGAGAATACACAAGCTGGGGATCAGC
CCGATCCCCCTCTCGTGCTGTCGATCCCACTGCCAGTCCTACTACCACAACCCTCAGGTCGGTCG
Found at i:11171088 original size:159 final size:157
Alignment explanation
Indices: 11170787--11171104 Score: 363
Period size: 159 Copynumber: 2.0 Consensus size: 157
11170777 GTCGATCCCA
* * *
11170787 CTGCCAGTCCTGCTACCACAACCCTCGACCCGATTGGGGCTTAGACATGGAATGAACTCCGTATA
1 CTGCCAGTCCCGCTACCACAACCCTCGACCCGACTGGGGCTTAGACATGGAATGAACTCCCTATA
* * * * * *
11170852 CCTAAGCCAACCCACGAAACCAGCGTGCGGGCACCCAGTAGACCGGAGAGGAAGAATACGTAAGT
66 CCTAAGCCAACCAACGAAACCAGCGTGCGGGCACCCAGCAGACCAGAGAGGAAAAATACGCAAGC
*
11170917 CGGGGATCAGCCCGATCCCCCTCTACGTG
131 CGAGGATCAGCCCGAT-CCCC-CTACGTG
* *
11170946 CTGCCTGTCCCGCTACCACAACCCTC-AGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTAT
1 CTGCCAGTCCCGCTACCACAACCCTCGA-CCCGACTGGGGCTTAGACATGGAATGAACTCCCTAT
* * ** * * * * *
11171010 GCCTAAGCCAACTAACGAAA-TGGACGTGCGGGCTCTCAGCCGGCCAGAGA-GACAAAATGCGCA
65 ACCTAAGCCAACCAACGAAACCAG-CGTGCGGGCACCCAGCAGACCAGAGAGGA-AAAATACGCA
* *
11171073 AGCCGAGGATTAGCCCGGTCCCCCTACGTG
128 AGCCGAGGATCAGCCCGATCCCCCTACGTG
11171103 CT
1 CT
11171105 TCCAATCTTA
Statistics
Matches: 133, Mismatches: 23, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
157 9 0.07
158 8 0.06
159 116 0.87
ACGTcount: A:0.25, C:0.33, G:0.25, T:0.16
Consensus pattern (157 bp):
CTGCCAGTCCCGCTACCACAACCCTCGACCCGACTGGGGCTTAGACATGGAATGAACTCCCTATA
CCTAAGCCAACCAACGAAACCAGCGTGCGGGCACCCAGCAGACCAGAGAGGAAAAATACGCAAGC
CGAGGATCAGCCCGATCCCCCTACGTG
Found at i:11171178 original size:26 final size:26
Alignment explanation
Indices: 11171142--11171194 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11171132 CCAATTAGAT
11171142 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11171168 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11171194 C
1 C
11171195 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11171367 original size:26 final size:26
Alignment explanation
Indices: 11171338--11171389 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11171328 CCAATCCGAT
11171338 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
11171364 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
11171390 TCTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:11171850 original size:354 final size:354
Alignment explanation
Indices: 11171180--11171821 Score: 912
Period size: 354 Copynumber: 1.8 Consensus size: 354
11171170 TAGACTGGGG
* *
11171180 ATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAATGTGCAGGCGCTCAACCGGCCAGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAACGTACAGGCGCTCAACCGGCCAGAGAGG
* ** * * * *
11171245 TAGAATGCGTAAGCCAGGGATCGGTCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGCTGGTTCT
66 CAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACAGCTGGTCCT
11171310 GCTACCGCAACCCTCAGTCCAATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGG
131 GCTACCGCAACCCTCAGTCCAATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGG
*
11171375 AATGAACTCCGTATGTCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAG
196 AATGAACTCCGTATGGCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAG
* *
11171440 GCAGAATGCGCAAGTCGGGGACCGGCCCAATCCCTCCGATGTGCCATCAATCCTGCTACCGTAAC
261 GCAGAATGCGCAAGTCGGGGACCGACCCAATCCCTACGATGTGCCATCAATCCTGCTACCGTAAC
11171505 CCTAGGTCTGGTCCGATTTTAGACTAAGA
326 CCTAGGTCTGGTCCGATTTTAGACTAAGA
* * * * * * * *
11171534 ATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGTTGAGCCGGTCGGTGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAACGTACAGGCGCTCAACCGGCCAGAGAGG
* * * *
11171599 CATAATGCACAAGTC-GAGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCAGTTGGTCC
66 CAGAATGCACAAGCCAG-GGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACAGCTGGTCC
** * ** * *
11171663 TGCTACCGCAACCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAACTTCC-TATGCTTAGACAT
130 TGCTACCGCAACCCTCAGTCCAATCCGATCTTAGACTAGGAATGAAC-TCCGTATGCTTAGACAT
** *
11171727 GGAATGAACTCCGTATGGCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAG
194 GGAATGAACTCCGTATGGCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* *
11171792 AGGCAGAATGCGTAAG-CTGGGGATCGACCC
259 AGGCAGAATGCGCAAGTC-GGGGACCGACCC
11171822 GGTCCCCTAT
Statistics
Matches: 250, Mismatches: 35, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
353 2 0.01
354 245 0.98
355 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (354 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAACGTACAGGCGCTCAACCGGCCAGAGAGG
CAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACAGCTGGTCCT
GCTACCGCAACCCTCAGTCCAATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGG
AATGAACTCCGTATGGCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAG
GCAGAATGCGCAAGTCGGGGACCGACCCAATCCCTACGATGTGCCATCAATCCTGCTACCGTAAC
CCTAGGTCTGGTCCGATTTTAGACTAAGA
Found at i:11171892 original size:354 final size:354
Alignment explanation
Indices: 11171168--11171902 Score: 883
Period size: 354 Copynumber: 2.1 Consensus size: 354
11171158 ACTCCGTATG
* * *
11171168 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAATGTGCAGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAACGTACAGGCGCTCAAC
* ** * *
11171233 CGGCCAGAGAGGTAGAATGCGTAAGCCAGGGATCGGTCCGGTCCCCCCTGCGTGCTGTCGATCCT
66 CGGCCAGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
* *
11171298 ACTGCTGGTTCTGCTACCGCAACCCTCAGTCCAATCCGATCTTAGACTAGGAATGAACTCCGTAT
131 ACAGCTGGTCCTGCTACCGCAACCCTCAGTCCAATCCGATCTTAGACTAGGAATGAACTCCGTAT
*
11171363 GCTTAGACATGGAATGAACTCCGTATGTCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
196 GCTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* *
11171428 CCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGACCGGCCCAATCCCTCCGATGTGCCATCAATCC
261 CCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGACCGACCCAATCCCTACGATGTGCCATCAATCC
* * *
11171493 TGCTACCGTAACCCTAGGTCTGGTCCGAT
326 TGCTACCGCAACCCTAGGTCCGATCCGAT
* ** * * * * *
11171522 TTTAGACTAAGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAACGTACAGGCGCTCAAC
* * * * *
11171587 CGGTCGGTGAGGCATAATGCACAAGTC-GAGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CGGCCAGAGAGGCAGAATGCACAAGCCAG-GGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * ** * ** * *
11171651 TGCAGTTGGTCCTGCTACCGCAACCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAACTTCC-T
130 TACAGCTGGTCCTGCTACCGCAACCCTCAGTCCAATCCGATCTTAGACTAGGAATGAAC-TCCGT
**
11171715 ATGCTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC
194 ATGCTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTC
* * * ** **
11171780 AGCTGGCCAGAGAGGCAGAATGCGTAAG-CTGGGGATCGACCCGGTCCCCTATAC-AT-T-TTAT
259 AGCCGGCCAGAGAGGCAGAATGCGCAAGTC-GGGGACCGACCCAAT-CCC--TACGATGTGCCAT
* *
11171841 CGATCCTGCT-CTCGCAACCCTCA-GTCCGATCTGAT
320 CAATCCTGCTAC-CGCAACCCT-AGGTCCGATCCGAT
* *
11171876 CTTAGGCTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
11171903 TTAGACTGAG
Statistics
Matches: 319, Mismatches: 54, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
353 3 0.01
354 304 0.95
355 8 0.03
356 2 0.01
357 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (354 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAACGTACAGGCGCTCAAC
CGGCCAGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
ACAGCTGGTCCTGCTACCGCAACCCTCAGTCCAATCCGATCTTAGACTAGGAATGAACTCCGTAT
GCTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
CCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGACCGACCCAATCCCTACGATGTGCCATCAATCC
TGCTACCGCAACCCTAGGTCCGATCCGAT
Found at i:11172102 original size:25 final size:26
Alignment explanation
Indices: 11172074--11172125 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11172064 CCGATCAGAT
11172074 CTTAGAC-TGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
11172099 CTTAGGCATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
11172125 C
1 C
11172126 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:11172595 original size:26 final size:26
Alignment explanation
Indices: 11172553--11172605 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11172543 TCGGTCTGAT
11172553 CTTAGACTGAGAGTGAACACCATATG
1 CTTAGACTGAGAGTGAACACCATATG
* *
11172579 CTTAGACTG-GAGATGAACTCCGTATG
1 CTTAGACTGAGAG-TGAACACCATATG
11172605 C
1 C
11172606 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGAGAGTGAACACCATATG
Found at i:11173739 original size:26 final size:27
Alignment explanation
Indices: 11173710--11173764 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
11173700 GTCCAATCTT
*
11173710 AGACTGGGAATGAACTCCGTATG-CTA
1 AGACTGGGAATGAACTCCGAATGCCTA
*
11173736 AGACTGGGGATGAACTCCGAATGCCTA
1 AGACTGGGAATGAACTCCGAATGCCTA
11173763 AG
1 AG
11173765 TCAACCCATG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.31, C:0.20, G:0.29, T:0.20
Consensus pattern (27 bp):
AGACTGGGAATGAACTCCGAATGCCTA
Found at i:11174178 original size:355 final size:354
Alignment explanation
Indices: 11173528--11174180 Score: 932
Period size: 355 Copynumber: 1.8 Consensus size: 354
11173518 TCTCGCTGCG
*
11173528 ACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
1 ACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
* * * * * **
11173593 AACGGGCGTGTGGGCGCTCAGCCGGCCGAAGAGGTAAATGCGCAAGCTGAGGATCGGCTTGGTCC
66 AACGGGCGTGCGGGCCCTCAGCCGACCGAAGAGGTAAATGCACAAACTGAGGATCGGCCCGGTCC
* * * *
11173658 CCACTGCGTGCTGCCGATCCTGCTACCACAGCCCTCGGTCCGGTCCAATCTTAGACTGGGAATGA
131 CCACTGCGTGCTGCCGATCCTGCTACCACAACCCTCGATCCGGTCCAATCTTACACTGGGAACGA
*
11173723 ACTCCGTATGCTAAGACTGGGGATGAACTCCGAATGCCTAAGTCAACCCATGAAACGAGCGTGCG
196 ACTCCATATGCTAAGACTGGGGATGAACTCCGAATGCCTAAGTCAACCCATGAAACGAGCGTGCG
** * * *
11173788 GGTGCTCAACCGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCTGGTCCCCTTCTGCGTG
261 GACGCTCAACCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCTGGTCCCCTTCTGCGTG
11173853 CTACCGATCCCGCTGTCGGTCCTGCTACC
326 CTACCGATCCCGCTGTCGGTCCTGCTACC
*
11173882 ACAACCCTCGGTCC-AGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
1 ACAACCCTCGATCCGA-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* * * *
11173946 AAATGGGCGTGCGGGCACCT-AGCCGATCGGAGAGGTAGAATGCACAAACTGGGGATCGGCCCGG
65 AAACGGGCGTGCGGGC-CCTCAGCCGACCGAAGAGGTA-AATGCACAAACTGAGGATCGGCCCGG
** * ** * * *
11174010 TCCCCTTTGCGTGCTGCTGATCCTGCTACCGTAACCCTCGATCCGGTCCAATTTTACATTGTGAA
128 TCCCCACTGCGTGCTGCCGATCCTGCTACCACAACCCTCGATCCGGTCCAATCTTACACTGGGAA
* *
11174075 CGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT
193 CGAACTCCATATGCTAAGACTGGGGATGAACTCCGAATGCCTAAGTCAACCCATGAAACGAGCGT
* ** *
11174140 GCGTACGCTCAGTCGACCAGAGAGGCAGGATGCGCAAGCCG
258 GCGGACGCTCAACCGACCAGAGAGGCAGAATGCGCAAGCCG
11174181 AGGGTCGAAC
Statistics
Matches: 259, Mismatches: 37, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
353 1 0.00
354 88 0.34
355 170 0.66
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (354 bp):
ACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
AACGGGCGTGCGGGCCCTCAGCCGACCGAAGAGGTAAATGCACAAACTGAGGATCGGCCCGGTCC
CCACTGCGTGCTGCCGATCCTGCTACCACAACCCTCGATCCGGTCCAATCTTACACTGGGAACGA
ACTCCATATGCTAAGACTGGGGATGAACTCCGAATGCCTAAGTCAACCCATGAAACGAGCGTGCG
GACGCTCAACCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCTGGTCCCCTTCTGCGTG
CTACCGATCCCGCTGTCGGTCCTGCTACC
Found at i:11175131 original size:158 final size:159
Alignment explanation
Indices: 11174810--11175152 Score: 419
Period size: 158 Copynumber: 2.2 Consensus size: 159
11174800 ACTACATATG
* * *
11174810 CTTAGACATGGAATGAACTCCGTATGCCTAGGCCAACCCACGAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
** * * * * *
11174875 CAGCCGGAGAGGCAGAATGTGCAAGCCGAGGATCAGCTCGGTCCCCTTTGTGTGCTGCCGATCTC
66 CAGCCGGAGAGGCAGAATGCACAAGCCAAGGATCAGCTCGGTCCCCTCTGCGTGCTACCAATCTC
****
11174940 ACTGCCACAACCCTCGATCCAGCTGGGGT
131 ACTGCCACAACCCTCGATCCAGCTCCAAT
* *
11174969 -TTAGACATGGAATGAACTTCC-TATGCCTAAGCCAACCCACGAAACGGGCGTATGGGCGCTCAG
1 CTTAGACATGGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* *
11175032 CCAGCCGGAGAGGCAGAATGCACAAGTCAAGGATCAGCTCGGTTCCCC-CTGCGTGCTATCAATC
65 CCAGCCGGAGAGGCAGAATGCACAAGCCAAGGATCAGCTCGG-TCCCCTCTGCGTGCTACCAATC
* * *
11175096 -CTACTGTCGCAACCCTCGGTCCAG-TCCAAT
129 TC-ACTGCCACAACCCTCGATCCAGCTCCAAT
11175126 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
11175153 TTATACTGGG
Statistics
Matches: 157, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
157 7 0.04
158 142 0.90
159 8 0.05
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CAGCCGGAGAGGCAGAATGCACAAGCCAAGGATCAGCTCGGTCCCCTCTGCGTGCTACCAATCTC
ACTGCCACAACCCTCGATCCAGCTCCAAT
Found at i:11175372 original size:26 final size:26
Alignment explanation
Indices: 11175333--11175385 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11175323 CTGGTCCAAT
* *
11175333 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACATAGAATGAACTCCGTATG
*
11175359 CTTAGACATAGAATGAACTCTGTATG
1 CTTAGACATAGAATGAACTCCGTATG
11175385 C
1 C
11175386 CTAGGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATAGAATGAACTCCGTATG
Found at i:11175719 original size:26 final size:26
Alignment explanation
Indices: 11175677--11175727 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
11175667 GGTCCAATCC
11175677 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
* * *
11175703 TAGACTGGGGATTAACTCTGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
11175728 CAATTCAACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:11175890 original size:550 final size:548
Alignment explanation
Indices: 11174783--11176106 Score: 1854
Period size: 550 Copynumber: 2.4 Consensus size: 548
11174773 TGGCTCAAAC
* *
11174783 TCTTAGACTTGGAATCAACTACATATGCTTAGACATGGAATGAACTCCGTATGCCTAGGCCAACC
1 TCTTAGACTTGGAATGAACTCCATATGCTTAGACAT-GAATGAACTCCGTATGCCTAGGCCAACC
* *
11174848 CACGAAACGAGCGTGCGGGCGCTTAGCCAGCCGGAGAGGCAGAATGTGCAAGCCGAGGATCAGCT
65 CACGAAACGAGCGTGCGGGCGCTTAGCCGGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCT
** * *
11174913 CGGTCCCCTTTGTGTGCTGCCGATCTCACTGCCACAACCCTCGATCCAGCTGGGGTTTAGACATG
130 CGGTCCCCTCCGCGTGCTGCCGATCTCGCTGCCACAACCCTCGATCCAGCTGGGGTTTAGACATG
11174978 GAATGAACTTCCTATGCCTAAGCCAACCCACGAAACGGGCGTATGGGCGCTCAGCCAGCCGGAGA
195 GAATGAACTTCCTATGCCTAAGCCAACCCACGAAACGGGCGTATGGGCGCTCAGCCAGCCGGAGA
* *
11175043 GGCAGAATGCACAAGTCAAGGATCAGCTCGGTTCCCCCTGCGTGCTATCAATCCTACTGTCGCAA
260 GGCAGAATGCACAAGTCAAGGATCAGCTCGGTTCCCCCTGCATGCTATCAATCCTACTATCGCAA
* * *
11175108 CCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTATACTGGGATTAACTTTG
325 CCCTCGGTCCAGTCCAATCCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGATTAACTCTG
* * *
11175173 TATGCCTAATTCAACCCACGAGACGAGCGTGCGGGCGCTCAACCTGTCGGAGAGGCCGATCGGAG
390 TATGCCTAATTCAACCCACGAAACGAGCGTACGGGCGCTCAACCTGTCGGAGAGGCCGATCGAAG
*
11175238 AGGCTGAATGCACAAGCCAGGGATCGGCTCGGTCCCCCTATGTGCTATCGATCCTGCTACTGGTC
455 AGGCTGAATGCACAAGCCAGGGATCGGCTCGGTCCCCCTATGTGCTATCGATCCAGCTACTGGTC
* *
11175303 CTACTACCGTAACCCTCGATCTGGTCCAA
520 CTACTACCGCAACCCTCGATCCGGTCCAA
* *
11175332 TCTTAGACTTGGAATGAACTCCGTATGCTTAGACATAGAATGAACTCTGTATGCCTAGGCCAACC
1 TCTTAGACTTGGAATGAACTCCATATGCTTAGACAT-GAATGAACTCCGTATGCCTAGGCCAACC
* *
11175397 CGCGAAACGAGCGTGTGGGCGCTTAGCCGGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCT
65 CACGAAACGAGCGTGCGGGCGCTTAGCCGGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCT
* * * *
11175462 TGGTCCCGCTCGGCGTGCTGCCGATCTCGCTACCACAACCCTCGGTCCAGCTGGGGTTTAGACAT
130 CGGTCCC-CTCCGCGTGCTGCCGATCTCGCTGCCACAACCCTCGATCCAGCTGGGGTTTAGACAT
* * ** *
11175527 GGAATGAACTTCCTATACCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCAGCTGGTCGGAG
194 GGAATGAACTTCCTATGCCTAAGCCAACCCACGAAACGGGCGTATGGGCGCTCAGCCAGCCGGAG
* ** * * * *
11175592 AGGTAGAATGCACAAG-CTGGGGATCGGTTTGGTTCCCCCTGCATGCTATCGATCCTACTATCGC
259 AGGCAGAATGCACAAGTC-AAGGATCAGCTCGGTTCCCCCTGCATGCTATCAATCCTACTATCGC
**
11175656 AA-CCTCGGTCTGGTCCAATCCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATTAACT
323 AACCCTCGGTCCAGTCCAATCCTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGATTAACT
* * * ** * *
11175720 CTGTATGCC-AATTCAACCTACGAAACGAGCGTACGGGTGTTC-AGTTGATCGGAGAGGTCGGTC
387 CTGTATGCCTAATTCAACCCACGAAACGAGCGTACGGGCGCTCAACCTG-TCGGAGAGGCCGATC
* *
11175783 GAAGAGGCTGAATGCACAAGTCGGGGATCGGCTCGGTCACCCCTATGTGCTATCGATCCAGCTAC
451 GAAGAGGCTGAATGCACAAGCCAGGGATCGGCTCGGTC-CCCCTATGTGCTATCGATCCAGCTAC
* * **
11175848 TGGTTCTACTATCGCAACCCTC-AGTCCGGTCTGA
515 TGGTCCTACTACCGCAACCCTCGA-TCCGGTCCAA
*
11175882 TCTTAGACTTGGAATGAACTCCATATGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTTGGAATGAACTCCATATGCTTAGACATG-AATGAACTCCGTATGCCTAGGCCAACC
* * * ** *
11175947 CACGAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAAAATGTGCAAGCTAGGGATCAGCC
65 CACGAAACGAGCGTGCGGGCGCTTAGCCGGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCT
* ** * * * **
11176012 CGGTCCCCCCCGCGTGCTATCGATC-CTGCTGCCGCAACCCTCGATCCAGTTTGATTTTAGAC-T
130 CGGTCCCCTCCGCGTGCTGCCGATCTC-GCTGCCACAACCCTCGATCCAGCTGGGGTTTAGACAT
*
11176075 GTGAATGAAC-TCCGTATGCCTAAGTCAACCCA
194 G-GAATGAACTTCC-TATGCCTAAGCCAACCCA
11176107 TGAATCGAAC
Statistics
Matches: 686, Mismatches: 79, Indels: 20
0.87 0.10 0.03
Matches are distributed among these distances:
548 9 0.01
549 319 0.47
550 358 0.52
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (548 bp):
TCTTAGACTTGGAATGAACTCCATATGCTTAGACATGAATGAACTCCGTATGCCTAGGCCAACCC
ACGAAACGAGCGTGCGGGCGCTTAGCCGGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCTC
GGTCCCCTCCGCGTGCTGCCGATCTCGCTGCCACAACCCTCGATCCAGCTGGGGTTTAGACATGG
AATGAACTTCCTATGCCTAAGCCAACCCACGAAACGGGCGTATGGGCGCTCAGCCAGCCGGAGAG
GCAGAATGCACAAGTCAAGGATCAGCTCGGTTCCCCCTGCATGCTATCAATCCTACTATCGCAAC
CCTCGGTCCAGTCCAATCCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGATTAACTCTGT
ATGCCTAATTCAACCCACGAAACGAGCGTACGGGCGCTCAACCTGTCGGAGAGGCCGATCGAAGA
GGCTGAATGCACAAGCCAGGGATCGGCTCGGTCCCCCTATGTGCTATCGATCCAGCTACTGGTCC
TACTACCGCAACCCTCGATCCGGTCCAA
Found at i:11175923 original size:26 final size:26
Alignment explanation
Indices: 11175883--11175935 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11175873 CCGGTCTGAT
* *
11175883 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACATGAAATGAACTCCATATG
*
11175909 CTTAGACATGAAATGAACTCCGTATG
1 CTTAGACATGAAATGAACTCCATATG
11175935 C
1 C
11175936 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACATGAAATGAACTCCATATG
Found at i:11176264 original size:159 final size:158
Alignment explanation
Indices: 11175908--11176410 Score: 508
Period size: 158 Copynumber: 3.2 Consensus size: 158
11175898 AACTCCATAT
* * *
11175908 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGTGCTCAG
* * * *
11175973 CCGGCCGGAGAGGCAAAATGTGCAAGCTAGGGATCAGCCCGGTCCCCCCCGCGTGCTATCGATCC
66 CCGGCCGGAGAGGCAAAATGTGTAAGCTGGGGATCAGCCCGGTCCCCCCCACGTGCTACCGATCC
* * * *
11176038 TGCTGCCGCAACCCTCGATCCAGTTTGA
131 CGCTGCCACAACCCTCGATCCAGCTGGA
** * * * * *
11176066 TTTTAGAC-TGTGAATGAACTCCGTATGCCTAAGTCAACCCATGAATCGAACGTTCGGGTGTTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGTGCTCA
* * * ** * * *
11176130 GCCGACCGGAGAGGCATAATGTGTATGCTGGGGATCAGCTTGGTCCCCCTCTACGTGTTGCCGAT
65 GCCGGCCGGAGAGGCAAAATGTGTAAGCTGGGGATCAGCCCGGTCCCCC-CCACGTGCTACCGAT
* * *
11176195 CCCGCTGCCACAACCTTCGATTCAGCTGGG
129 CCCGCTGCCACAACCCTCGATCCAGCTGGA
* * **
11176225 GCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCATGAAACGGTCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGTGCTCAG
* * * * * * * * **
11176290 CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCAGTCCCTCCTATGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAAAATGTGTAAGCTGGGGATCAGCCCGGTCCCCCCCACGTGCTACCGATCC
* * * *
11176355 TGCTGTCGCAACCCTCGATCCAG-TCCGA
131 CGCTGCCACAACCCTCGATCCAGCT-GGA
* *
11176383 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
11176411 TTAGATTGGA
Statistics
Matches: 276, Mismatches: 64, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
157 4 0.01
158 148 0.54
159 122 0.44
160 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGTGCTCAG
CCGGCCGGAGAGGCAAAATGTGTAAGCTGGGGATCAGCCCGGTCCCCCCCACGTGCTACCGATCC
CGCTGCCACAACCCTCGATCCAGCTGGA
Found at i:11176780 original size:26 final size:26
Alignment explanation
Indices: 11176751--11176803 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11176741 CCGATCCGAT
11176751 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
11176777 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
11176803 C
1 C
11176804 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:11176942 original size:367 final size:366
Alignment explanation
Indices: 11176201--11177095 Score: 1075
Period size: 367 Copynumber: 2.4 Consensus size: 366
11176191 CGATCCCGCT
* * * * *
11176201 GCCACAACCTTCGATTC-AGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCC
1 GCCACAACCCTCGGTTCGA-CTGGAGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCC
*
11176265 ATGAAACGGTCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCC
65 ATGAAACGG-CGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCATAAGCCGGGGATCAGCCC
* * *
11176330 AGTCCCTCCTATGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCCAGTCCGATCTTAGACTGGG
129 GGTCCCTCCTACGTGCT-ACGATCCTGCTGTCGCAACCCTCGATCCAGTCCGATCTTAGACTGGG
* * **
11176395 AATGAACTCTGTATGCTTAGATTGGAGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGC
193 AATGAACTCCGTATGCTTAGATTGGAGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGC
* ** * * * * *
11176460 GTGCGGGCATTCAGTCGACCAGAGAGTTCGGTCGGAGATGTATAATGCGCATACCGAGGATCAGC
258 GTACGGGCATTCAGTCGACCAGAGAGGCCAGTCGGAGAGGCATAATGCCCATACCGAGGATCAAC
** * * * *
11176525 CCAATCCCCCTCTGTGTGCTGTGAATCCCATTACCGGTCTTGCT
323 CCAATCCCCCTCTACGTGCTGTGAATCCCACTACCGGTCCTACC
* * *
11176569 GCCACAACCCTCGGTTCGACTGGAGCTTAAACAT-GAATCAACTCCTTATGCCGAAGCCAACCCA
1 GCCACAACCCTCGGTTCGACTGGAGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * * * *
11176633 TAAAACGGCCATGCGGGTGCTTAGCCAGTCGGAGAGGCAGAATGCACAAGCTGAGGATC-GACCC
66 TGAAACGG-CGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCATAAGCCGGGGATCAG-CCC
* *
11176697 GGTCCCTCCTGCGTGCTACGAATCCTGCTGTCGCAACCCTC-AGTCC-GATCCGATCTTAGATTG
129 GGTCCCTCCTACGTGCTACG-ATCCTGCTGTCGCAACCCTCGA-TCCAG-TCCGATCTTAGACTG
*
11176760 GGAATGAACTCCGTATGCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGA
191 GGAATGAACTCCGTATGCTTAGATTGGAGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGA
**** * *
11176825 GCGTACGGGCATTCAGTCGGTTGGAGAGGCCAGTCGGAGAGGCATAATGCCCATGCCGGGGATCA
256 GCGTACGGGCATTCAGTCGACCAGAGAGGCCAGTCGGAGAGGCATAATGCCCATACCGAGGATCA
** * * *
11176890 ACCCGGTCCCCCTCTACGTGCTGTCG-ATCCCGCTGCTGGTCCTACC
321 ACCCAATCCCCCTCTACGTGCTGT-GAATCCCACTACCGGTCCTACC
** * ** * *
11176936 GCCACAACCCTTAGTCCGACTGGTTCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
1 GCCACAACCCTCGGTTCGACTGGAGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* *
11177001 TGAAACGAGCGTGTGGGTGCTCAGTCGGTCGGAGAGGCAGAATG-AGTAAGCCGGGGATCAGCCC
66 TGAAACG-GCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCA-TAAGCCGGGGATCAGCCC
* *
11177065 GGTCCCCCCTACCTGCTACCGATCCTGCTGT
129 GGTCCCTCCTACGTGCTA-CGATCCTGCTGT
11177096 TGGTCCTACT
Statistics
Matches: 443, Mismatches: 73, Indels: 22
0.82 0.14 0.04
Matches are distributed among these distances:
366 5 0.01
367 303 0.68
368 130 0.29
369 5 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (366 bp):
GCCACAACCCTCGGTTCGACTGGAGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
TGAAACGGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCATAAGCCGGGGATCAGCCCGG
TCCCTCCTACGTGCTACGATCCTGCTGTCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAAT
GAACTCCGTATGCTTAGATTGGAGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTA
CGGGCATTCAGTCGACCAGAGAGGCCAGTCGGAGAGGCATAATGCCCATACCGAGGATCAACCCA
ATCCCCCTCTACGTGCTGTGAATCCCACTACCGGTCCTACC
Found at i:11177169 original size:26 final size:26
Alignment explanation
Indices: 11177131--11177183 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11177121 CCGGTCAGAT
*
11177131 CATAGACTGGGAATGAACTTCGTATG
1 CATAGACTGGGAATGAACTCCGTATG
11177157 CATAGACAT-GGAATGAACTCCGTATG
1 CATAGAC-TGGGAATGAACTCCGTATG
11177183 C
1 C
11177184 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (26 bp):
CATAGACTGGGAATGAACTCCGTATG
Found at i:11177647 original size:26 final size:26
Alignment explanation
Indices: 11177618--11177670 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11177608 CTAATCTGAT
*
11177618 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11177644 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11177670 C
1 C
11177671 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11178323 original size:26 final size:26
Alignment explanation
Indices: 11178285--11178337 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11178275 GGCTCAAAAT
11178285 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11178311 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
11178337 C
1 C
11178338 CTAACACAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11178836 original size:26 final size:26
Alignment explanation
Indices: 11178785--11178837 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11178775 CCAGTCTGAT
*
11178785 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
11178811 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11178837 C
1 C
11178838 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11179180 original size:25 final size:26
Alignment explanation
Indices: 11179152--11179202 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11179142 CCGATTCGAT
* *
11179152 CTTAGAC-TGGAATGAACTCCGTATG
1 CTTAGACATGAAATAAACTCCGTATG
11179177 CTTAGACATGAAATAAACTCCGTATG
1 CTTAGACATGAAATAAACTCCGTATG
11179203 GTTAAGCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTAGACATGAAATAAACTCCGTATG
Found at i:11179544 original size:26 final size:26
Alignment explanation
Indices: 11179506--11179558 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
11179496 TCGATTTGAT
11179506 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
11179532 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
11179558 C
1 C
11179559 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:11179661 original size:355 final size:352
Alignment explanation
Indices: 11178982--11179741 Score: 871
Period size: 355 Copynumber: 2.1 Consensus size: 352
11178972 CCGATTGGGG
* ** * ** * * * *
11178982 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAACGTGCGGGTGCTCAG
1 CTTAGACTA-GGAATGAACTACGTATGAATAAGTCAACCCATGAAACGAGCATACGGGCGCTCAG
* * * * * *
11179046 CCGGTTGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
65 CCAGTCGGAGAGGCAGAATGCACAAGTCGAGGATCAACCCGATCCCCCCTACGTGCTGTCAATCC
* * *
11179111 TGCTGCTGGTCTTGCTGCTGCAACCCTCGATCCGATTCGATCTTAGACTGGAATGAACTCCGTAT
130 TGCTGCTGGTCCTGCTACCGCAACCCTCGATCCGATTCGATCTTAGACTGGAATGAACTCCGTAT
** * *
11179176 GCTTAGACATGAAATAAACTCCGTATGGTTAAGCCAACCAATGAAACGAGCGTGCAGGCACGCAG
195 GCTTAGACATGAAATAAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTACAGGCACGCAG
* * * * * * * * *
11179241 TCGGATGGAGAGGTAGAATGCGTAAATCAGGGACTGGCCATGTCCCCCTTGTGTGCTGTCGATCC
260 CCGGACGAAGAGGCAGAATGCG-AAAGCAGGGACTGGCCACGTCCCCCCTGCGTACTGTCGATCC
11179306 TGCTA-CCGCAACCCTCAGTCCGATCCGAT
324 TG-TAGCCGCAACCCTCAGTCCGATCCGAT
* ** * *
11179335 CTTAGACTAGGAATGAACTATGTATGCGTAAGTCAACCCGTGAAATGAGCATACGGGCGCTCAGC
1 CTTAGACTAGGAATGAACTACGTATGAATAAGTCAACCCATGAAACGAGCATACGGGCGCTCAGC
* * *
11179400 CAGTCGGAGAGGCAGAATGCACAAGTCGGGGATCAACCCGATCCTCCCCTGCGTTCTGTCAATCC
66 CAGTCGGAGAGGCAGAATGCACAAGTCGAGGATCAACCCGATCC-CCCCTACGTGCTGTCAATCC
* * * * *
11179465 TGCTGTTGGTCCTGCTACCGCAACCCTCGGTTCGATTTGATCTTAGACTGGGAATGAACTCTGTA
130 TGCTGCTGGTCCTGCTACCGCAACCCTCGATCCGATTCGATCTTAGACT-GGAATGAACTCCGTA
* * * * * ***
11179530 TGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGTTCA
194 TGCTTAGACATGAAATAAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTACAGGCACGCA
* *
11179595 GCCGGCCGAAGAGGCAGAATGC-ACAAGCAAGGGATTGGCC-CGATCCCCCCTGCGTACTGTCGA
259 GCCGGACGAAGAGGCAGAATGCGA-AAGC-AGGGACTGGCCACG-TCCCCCCTGCGTACTGTCGA
* * *
11179658 TCCTGTAGCCGCAACCTTCAGTCCGGTTCGAT
321 TCCTGTAGCCGCAACCCTCAGTCCGATCCGAT
* * *
11179690 CTTAGACTGGGAATGAACTCCGTATGAATAAGTGAACCCATGAAACGAGCAT
1 CTTAGACTAGGAATGAACTACGTATGAATAAGTCAACCCATGAAACGAGCAT
11179742 GTGGTTGTTG
Statistics
Matches: 337, Mismatches: 63, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
353 90 0.27
354 66 0.20
355 181 0.54
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.21
Consensus pattern (352 bp):
CTTAGACTAGGAATGAACTACGTATGAATAAGTCAACCCATGAAACGAGCATACGGGCGCTCAGC
CAGTCGGAGAGGCAGAATGCACAAGTCGAGGATCAACCCGATCCCCCCTACGTGCTGTCAATCCT
GCTGCTGGTCCTGCTACCGCAACCCTCGATCCGATTCGATCTTAGACTGGAATGAACTCCGTATG
CTTAGACATGAAATAAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTACAGGCACGCAGC
CGGACGAAGAGGCAGAATGCGAAAGCAGGGACTGGCCACGTCCCCCCTGCGTACTGTCGATCCTG
TAGCCGCAACCCTCAGTCCGATCCGAT
Found at i:11179947 original size:159 final size:158
Alignment explanation
Indices: 11179531--11179951 Score: 416
Period size: 159 Copynumber: 2.7 Consensus size: 158
11179521 AACTCTGTAT
* * *
11179531 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGTTCAG
* * *
11179596 CCGGCCGAAGAGGCAGAATGCACAAGC-AAGGGATTGGCCCGATCCCCCCTGCGTACTGTCGATC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCTAA-GGATCGGCCCGATCCCCCCTGCGTACTATCGATC
* * *
11179660 CTGTAGCCGCAACCTTCAGTCCGGTTCGA
130 CTGTAGCCACAACCCTCAGTCCGGCTCGA
* ** ** * * ** *
11179689 TCTTAGAC-TGGGAATGAACTCCGTATGAATAAGTGAACCCATGAAACGAGCATGTGGTTGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGTTCA
* * * * * ** * * *
11179753 GCCGACCGAAGAGGCATAATACGTAAGATGGGGATCGGCCCGGTCCCCCTCTGTGTGCTATCGAT
65 GCCGGCCGAAGAGGCAGAATGCGCAAGCTAAGGATCGGCCCGATCCCCC-CTGCGTACTATCGAT
* * * *
11179818 CTTGCTA-CCACAACCCTCGGTCCGGCTGGG
129 CCTG-TAGCCACAACCCTCAGTCCGGCTCGA
* * * * *
11179848 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGTTCAG
* * *
11179913 CCGGCCGGAGAGGTAGAATGTGCAAGCTAAGGATCGGCC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCTAAGGATCGGCC
11179952 TTGTCGCCCC
Statistics
Matches: 200, Mismatches: 58, Indels: 9
0.75 0.22 0.03
Matches are distributed among these distances:
157 1 0.00
158 87 0.44
159 109 0.55
160 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGTTCAG
CCGGCCGAAGAGGCAGAATGCGCAAGCTAAGGATCGGCCCGATCCCCCCTGCGTACTATCGATCC
TGTAGCCACAACCCTCAGTCCGGCTCGA
Found at i:11180044 original size:26 final size:26
Alignment explanation
Indices: 11180008--11180079 Score: 117
Period size: 26 Copynumber: 2.8 Consensus size: 26
11179998 AGACTAGGAG
*
11180008 TGGGAATGAACTCTGTATGCTTAGAC
1 TGGGAATGAACTCCGTATGCTTAGAC
11180034 TGGGAATGAACTCCGTATGCTTAGAC
1 TGGGAATGAACTCCGTATGCTTAGAC
* *
11180060 TGGGGATGAACTCCATATGC
1 TGGGAATGAACTCCGTATGC
11180080 CTAAGTCAAC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (26 bp):
TGGGAATGAACTCCGTATGCTTAGAC
Found at i:11181147 original size:184 final size:184
Alignment explanation
Indices: 11180940--11181302 Score: 467
Period size: 184 Copynumber: 2.0 Consensus size: 184
11180930 TTCGGCTAGG
* *
11180940 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCATACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCATACGGGCGCTAAA
* * * *
11181005 CC-GATAGGAGAGGTAGAATGCACAAACCGAGGATTGGCCTGATCCCCCCTGTGTGCTATCGATC
66 CCAGATA-GAGAGGCAGAATGCACAAACCGAGGATCGGCCCGATCCCCCCTGCGTGCTATCGATC
** * * * *
11181069 CTGCTGCTGCAACCTTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCTATAT
130 CTGCTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCTATAT
** * *
11181124 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCATACGGGCGCTAAA
* ** * * * * * *
11181189 CCAGCTAGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCTTGCGTGCTGTCGATTC
66 CCAGATAGAGAGGCAGAATGCACAAACCGAGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCC
* *
11181254 TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTATGAATGAACTC
131 TGCTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTC
11181303 CGTATGCCTA
Statistics
Matches: 151, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
184 148 0.98
185 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCATACGGGCGCTAAA
CCAGATAGAGAGGCAGAATGCACAAACCGAGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCC
TGCTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCTATAT
Found at i:11181150 original size:26 final size:26
Alignment explanation
Indices: 11181099--11181151 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11181089 TCGGTCTGAT
*
11181099 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11181125 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
11181151 C
1 C
11181152 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11181485 original size:159 final size:158
Alignment explanation
Indices: 11181124--11181488 Score: 470
Period size: 158 Copynumber: 2.3 Consensus size: 158
11181114 AACTCTATAT
*
11181124 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTAAA
** * *
11181189 CCAGCTAGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCTTGCGTGCTGTCGATTC
66 CCAGCTAGAGAGGCAGAATACGCAAGCCGGAGATCGGCCCGGTCCCCCTTGCGTGCTATCGATTC
* * * *
11181254 TGCTGCCACAACCCTCGGTCCGGTCCGA
131 TGCTACCACAACCCTCGATCCGCTCAGA
* * * *
11181282 TCTTAGACTAT-GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGA
1 GCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTAA
* * *
11181346 GCCAG-TCGGAGAGGCATAATACGCAAGCCGGAGATCGGCCCGGTCCCCCTCTGCGTGCTATCG-
65 ACCAGCT-AGAGAGGCAGAATACGCAAGCCGGAGATCGGCCCGGTCCCCCT-TGCGTGCTATCGA
* *
11181409 GTCTCGCTACCACAACCC-CTGATCCAGCT-AGG
128 TTCT-GCTACCACAACCCTC-GATCC-GCTCAGA
*
11181441 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACG
11181489 GGCATGCGAG
Statistics
Matches: 179, Mismatches: 21, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
157 1 0.01
158 104 0.58
159 72 0.40
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTAAA
CCAGCTAGAGAGGCAGAATACGCAAGCCGGAGATCGGCCCGGTCCCCCTTGCGTGCTATCGATTC
TGCTACCACAACCCTCGATCCGCTCAGA
Found at i:11181518 original size:159 final size:156
Alignment explanation
Indices: 11181124--11181562 Score: 483
Period size: 159 Copynumber: 2.8 Consensus size: 156
11181114 AACTCTATAT
* *
11181124 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCT-GA
* * ** *
11181189 CCAGCTAGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCTTGCGTGCTGTCGATTC
65 CCATCGA-AGAGGCAGAATACGCAAGCCGGGGATCGGCCCGGTCCCCCTTGCGTGCTATCGATTC
* * * *
11181254 TGCTGCCACAACCCTCGGTCCGGTCCGA
129 TGCTACCACAACCCTCGATCCGCTCAGA
* * *
11181282 TCTTAGACTAT-GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGA
1 GCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGA
* * * *
11181346 GCCAGTCGGAGAGGCATAATACGCAAGCCGGAGATCGGCCCGGTCCCCCTCTGCGTGCTATCG-G
65 -CCA-TCGAAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGGTCCCCCT-TGCGTGCTATCGAT
*
11181410 TCTCGCTACCACAACCC-CTGATCCAGCT-AGG
127 TCT-GCTACCACAACCCTC-GATCC-GCTCAGA
* * * * *
11181441 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGAGCACTCGA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCT-GA
* ** *
11181506 CCGATCGAAGAGGCAGAA-AGCGCAAGCCGGGGATCGGCTCGACCCCCCTTACGTGCT
65 CC-ATCGAAGAGGCAGAATA-CGCAAGCCGGGGATCGGCCCGGTCCCCCTTGCGTGCT
11181563 GCCGATCCTG
Statistics
Matches: 236, Mismatches: 34, Indels: 22
0.81 0.12 0.08
Matches are distributed among these distances:
157 1 0.00
158 109 0.46
159 121 0.51
160 5 0.02
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAC
CATCGAAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGGTCCCCCTTGCGTGCTATCGATTCTG
CTACCACAACCCTCGATCCGCTCAGA
Found at i:11181641 original size:26 final size:26
Alignment explanation
Indices: 11181612--11181663 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11181602 CCAGTCCGAT
11181612 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
* *
11181638 CTTAGGCATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
11181664 TGTAAGCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:11183867 original size:159 final size:157
Alignment explanation
Indices: 11183610--11183944 Score: 424
Period size: 159 Copynumber: 2.1 Consensus size: 157
11183600 AATCCTGTTA
* * *
11183610 CCACAACCCTCGGTCTGACTGGCGGTTAGACATGGAATGAACTCCGTCTGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGACTGGCGGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * * *
11183675 GAAATGAGCGTGCGGGCACTCAGCCAGCTGGAGATGCAGAATCTGC-AAGCCGGGGATCGACCCG
66 GAAACGAGCGTGCGAGCACTCAGCCAGCCGGAGAGGAAGAA--TGCAAAGCCGGGGATCGACCCG
* *
11183739 GTCCCCCCCTGCGTGCTTTCGGTCCTACTG
129 GT-CCCCCCTGCGTGCTGTCGATCCTACTG
* *
11183769 CCACCACCGTCGGTCCGACTGG-GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 CCACAACCCTCGGTCCGACTGGCGG-TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * *
11183833 TGAAACGAGCGTGCGAGCGCTCAGTC-GACCGGAGAGGAAGAATGCATAAGTCGGGGATCGGCCC
65 TGAAACGAGCGTGCGAGCACTCAGCCAG-CCGGAGAGGAAGAATGCA-AAGCCGGGGATCGACCC
* *
11183897 GGTCCCCTCTGCGTGCTGTCGATCCTGCTG
128 GGTCCCCCCTGCGTGCTGTCGATCCTACTG
*
11183927 CCACAACCCTCGATCCGA
1 CCACAACCCTCGGTCCGA
11183945 TCCGATCTTA
Statistics
Matches: 151, Mismatches: 21, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
157 3 0.02
158 41 0.27
159 107 0.71
ACGTcount: A:0.21, C:0.33, G:0.28, T:0.18
Consensus pattern (157 bp):
CCACAACCCTCGGTCCGACTGGCGGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
GAAACGAGCGTGCGAGCACTCAGCCAGCCGGAGAGGAAGAATGCAAAGCCGGGGATCGACCCGGT
CCCCCCTGCGTGCTGTCGATCCTACTG
Found at i:11184563 original size:159 final size:160
Alignment explanation
Indices: 11184185--11184631 Score: 438
Period size: 159 Copynumber: 2.8 Consensus size: 160
11184175 AACTCCGTAT
* * *
11184185 GCTTACACATGGAATGAACACCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGTGCTCAG
* * * * * *
11184250 CCGGCCGAAGAGGCAGAATGCGTAAGCCAGGGACCGACTCGAT-CCCCTCTTGCATGCTATCGAT
66 TCGGCCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTC-TGCATGCTGTCGAT
** * * * *
11184314 CTTGCTGTCGCAACCCTCAGTCTGATCTGAT
130 CCAGCTGTCACAACCCTCAGTCCGAGCTGAG
* * ** * * * * * *
11184345 G-TTAGATAGGGAATGAACTTTGTATGCCTATGTCAACCCATGAAATGAGCGTTCTGGTGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGTGCTCAG
* * * * *
11184409 TTGGCCGGAGAGGTATAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTC
66 TCGGCCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTCTGCATGCTGTCGATC
* *
11184474 CAGCTG-CAACAACCCTCGGTCCG-GCTGGG
131 CAGCTGTC-ACAACCCTCAGTCCGAGCTGAG
* * * * * *
11184503 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGTGCTCAG
* ** * *
11184568 TCGGCCGGAAAGGCAGAATGCACAAACC-GAGGATCAGCCCGATCCCCCT-TGCATGCTGTCGAT
66 TCGGCCGGAGAGGCAGAATGCGTAAGCCAG-GGATCGGCCCGATCCCCCTCTGCATGCTGTCGAT
11184631 C
130 C
11184632 TTACTGCCGT
Statistics
Matches: 227, Mismatches: 56, Indels: 10
0.77 0.19 0.03
Matches are distributed among these distances:
158 19 0.08
159 201 0.89
160 7 0.03
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGTGCTCAG
TCGGCCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTCTGCATGCTGTCGATC
CAGCTGTCACAACCCTCAGTCCGAGCTGAG
Found at i:11185449 original size:158 final size:158
Alignment explanation
Indices: 11185067--11185472 Score: 381
Period size: 158 Copynumber: 2.6 Consensus size: 158
11185057 ACCTCTGCAT
* * *
11185067 GCTTAGACATGAAATGAACTCCGTATGCCTCAA-CCAACCCATGAAATGAACGTGCGGGCGCTTA
1 GCTTAGACATGGAATGAACTCCGTATGCCT-AAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
** * * **
11185131 -CTAGCCGGAGAGGCAGAATGCGTAAGTCAGGGATCGACCCGGTCCCCCCTACCTGCTGTGGATC
65 GCCGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGATCCCCCCTACCTGCTGCAGATC
* * *
11185195 CTGCTACCCCAACCCTCGGTCCGGTCCGA
130 CTACTACCACAACCCTCGGTCCGCTCCGA
* * * * * ** ** * * ** *
11185224 TCTTAGAC-TGGGAATAAACTTCGTACGCCTAAGTCAACCCGCGAAACAAGCATGCAGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * * * * *
11185288 GCCGGCCGGAGAGGGATAATGTGCAAGTCAGGGATCGACCCGATCCCCTCTGCGTGCTGCCAG-T
65 GCCGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGATCCCCCCTACCTGCTG-CAGAT
* * * *
11185352 CCTACTGCCACAACCCTCGGTCTGACT-GGG
129 CCTACTACCACAACCCTCGGTCCG-CTCCGA
* *
11185382 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* *
11185447 CCGGTCGGAAAGGCAGAATGCGCAAG
66 CCGGCCGGAGAGGCAGAATGCGCAAG
11185473 CTGGGTATCG
Statistics
Matches: 187, Mismatches: 56, Indels: 11
0.74 0.22 0.04
Matches are distributed among these distances:
156 3 0.02
157 43 0.23
158 138 0.74
159 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGATCCCCCCTACCTGCTGCAGATCC
TACTACCACAACCCTCGGTCCGCTCCGA
Found at i:11186591 original size:26 final size:26
Alignment explanation
Indices: 11186562--11186614 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11186552 CCGATCCGAT
*
11186562 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
11186588 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
11186614 C
1 C
11186615 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:11187132 original size:159 final size:158
Alignment explanation
Indices: 11186784--11187223 Score: 400
Period size: 159 Copynumber: 2.8 Consensus size: 158
11186774 AACTTCGAAT
* * * *
11186784 GCTTAGACATGGAATGAACACTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCGTTCAG
* * ** *
11186849 TCAGCCCGAGAGGTAGAATGCGCAAGCCGAGTTTCGGCCCGATCCCCCCTGCGTGCTATCAATCC
66 TCAGACCGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTGCGTGCTATCAATCC
* * * *
11186914 TGCTATCGCAACCCTCGGTCCGATCCGA
131 CGCTACCACAACCCTCCGTCCGATCCGA
* * * * * * * * * *
11186942 TCTTAGAC-TGGGAGTTAACTCCGTACGCCTAAGTCAAACCATGAAATGAGTGTACGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCGTTCA
* * * * **
11187006 GTC-GACCGAAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGATCCCCCTTCGCGTGCTGTCGG
65 GTCAGACCG-AGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCT-GCGTGCTATCAA
* ** *
11187070 TCCCGCTGCCACAACCCTCCGTCCGATTGGG
128 TCCCGCTACCACAACCCTCCGTCCGATCCGA
* * * *
11187101 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGACGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-CGTACAGGCGTTCA
* *** * * * * * *
11187165 GCCAGTTGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTTACGTGCTA
65 GTCAGACCGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTGCGTGCTA
11187224 CTGATACTGC
Statistics
Matches: 219, Mismatches: 57, Indels: 12
0.76 0.20 0.04
Matches are distributed among these distances:
157 5 0.02
158 94 0.43
159 117 0.53
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCGTTCAG
TCAGACCGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTGCGTGCTATCAATCC
CGCTACCACAACCCTCCGTCCGATCCGA
Found at i:11187824 original size:159 final size:156
Alignment explanation
Indices: 11187442--11187900 Score: 479
Period size: 159 Copynumber: 2.9 Consensus size: 156
11187432 GTCGGTCCTA
* *
11187442 CTGCCATAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCTGATTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
11187507 CACGAAACGAGCGTGCGGGTCCTCAGCCGACCAAAGAGGTAGAATGCGCAAGCTGGGGATCGATC
66 CATGAAACGAGCGTGCGGG-CCTCAGCCG-CCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACC
* * **
11187572 TAGTCCCCCCTGCGTGCTGTCGATCTTG
129 CAGTCCCCCCTGCGTGCTGTAGATCCCG
* * * * ** ** ** *
11187600 CTACCGCAACCCTTGGTCTGGTCCGATCTTAGAC-TGGGAATGAACTTTGTATGCCTAAGTCAAC
1 CTGCCACAACCCTCGGTCTGATTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * *
11187664 CCATGAAACAAGCATTCGGGCACTGAGCCTGTCGGAGAGGCATAATGCGCAAGCCAGGGATCGAC
65 CCATGAAACGAGCGTGCGGGC-CTCAGCC-GCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGAC
*
11187729 CCAGTCCCCCTCTGCGTGCTGTAGGTCCCG
128 CCAGTCCCCC-CTGCGTGCTGTAGATCCCG
* * * * *
11187759 TTGCCACAAGCCTCGGTCCGATTGGGGCTTAGACATTGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCTGATTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
11187824 CATGAAACGGGCGTGCAGGCGCTCAGCCAACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACC
66 CATGAAACGAGCGTGCGGGC-CTCAGCC-GCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACC
*
11187889 CTGTCCCCCCTG
129 CAGTCCCCCCTG
11187901 TATGCTACCG
Statistics
Matches: 235, Mismatches: 61, Indels: 10
0.77 0.20 0.03
Matches are distributed among these distances:
157 2 0.01
158 109 0.46
159 123 0.52
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (156 bp):
CTGCCACAACCCTCGGTCTGATTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CATGAAACGAGCGTGCGGGCCTCAGCCGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCA
GTCCCCCCTGCGTGCTGTAGATCCCG
Found at i:11187985 original size:26 final size:26
Alignment explanation
Indices: 11187956--11188008 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11187946 CCGATCCAAT
11187956 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
11187982 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
11188008 C
1 C
11188009 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:11188334 original size:26 final size:26
Alignment explanation
Indices: 11188298--11188350 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11188288 CTGGTCCGAT
11188298 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
11188324 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11188350 C
1 C
11188351 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Done.