Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 67 of 402
Found at i:11189051 original size:26 final size:26
Alignment explanation
Indices: 11189022--11189074 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11189012 GGCTCAAAAT
*
11189022 CTTAGAC-TGTGAATGAACTTCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
11189048 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
11189074 C
1 C
11189075 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:11194800 original size:26 final size:26
Alignment explanation
Indices: 11194748--11194800 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
11194738 CCAGTCCGAT
* *
11194748 CTTAGATTAGGAATGAACTCTGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
* * *
11194774 CTTAGACTAGGGATGAGCTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
11194800 C
1 C
11194801 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:11195515 original size:318 final size:312
Alignment explanation
Indices: 11194926--11195777 Score: 890
Period size: 318 Copynumber: 2.7 Consensus size: 312
11194916 CTGCTATCGG
*
11194926 TCCTGCTGCCACAACCCTCGGTCC-GACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
1 TCCTGCTGCCACAACCCTCGGTCCTG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * *
11194990 CGAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCAGAGAGGCAAAATGCGCAA-CCTGGGG
65 C-AACCCACGAAACGGGCGTGC-GGCGCTCAG-CGGTCGGAGAGGCAAAATGCGCAAGCC-GGGG
* * * * *
11195054 ATCGACCCGATCCCCCCATACATGCTGTCGATCCTGCTACCGCAACCCTTAGTCTGGTCCGATCT
126 ATCGACTCGATCCCCCC-TACGTGCTGTCGATCCTACTACCGCAACCC-TAGTC-CGTCTGATCT
* * * *
11195119 TAGATTGGGAATGAACTTCGCATGCCTAAGTCAACCCACGAAACGAGCATGCGAGCGCTGAGCCG
188 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGAGCACTGAGCCG
** * * **
11195184 GTTAGGGAGGCATAATGCGTAAGTCGAGGATC-AGCCCGATCCCCCTCTGCGTGCTGCCAA
253 GACAGGAAGGCATAATGCGCAACCCGAGGATCGA-CCCGATCCCCCTCTGCGTGCTGCCAA
* *
11195244 TCCTGCTGCCACAACCCTCGATCCTGCTGGGGCTTAGAGATGGAATGAACTCCCTATGCCTAAGT
1 TCCTGCTGCCACAACCCTCGGTCCTGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG-
* * * *
11195309 CAACCCACGAAATGGGCGTGCGAGCGCTCAGCTGGTCGGAGAAGTAGAATGCGCAAGCCGGGGAT
65 CAACCCACGAAACGGGCGTGCG-GCGCTCAGC-GGTCGGAGAGGCAAAATGCGCAAGCCGGGGAT
* * * *
11195374 CGACTCGTTCCCCCTCCACGTGCTGTCGATCCTACTGCCGTAACCCTCAGTTCCGTCTGATCTTA
128 CGACTCGATCCCCC-CTACGTGCTGTCGATCCTACTACCGCAACCCT-AG-TCCGTCTGATCTTA
* * * * * *
11195439 GACTGGGAATGAACTCCGTATGCCTAGGTCAACCCATGAAATGAGCGTGTGGGCACTGAGCC-GA
190 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGAGCACTGAGCCGGA
* * * * **
11195503 CCGGAAAGGCATAATGTGCAACCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGG
255 CAGG-AAGGCATAATGCGCAACCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGCCAA
** * * **
11195562 TCCCACTAG-CACAACCCTCGGT-CTGGCTAGGGCTTAGACATAGAATGAACTCTTTATGCCTAA
1 TCCTGCT-GCCACAACCCTCGGTCCT-GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* * * * * ** * *
11195625 GCCAACCCATGAAACGGGTGTGCTGGCCCTTAGGCAGTCGGAGAGGCAAAATGCATAAGTCGAGG
64 G-CAACCCACGAAACGGGCGTGC-GGCGCTCA-GCGGTCGGAGAGGCAAAATGCGCAAGCCGGGG
* * * *
11195690 ATC-AGTTCGATCCCCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTTGGCCTAGTCTGATCT
126 ATCGA-CTCGATCCCCCCTACGTGCTGTCGATCCTACTACCGCAACCCTAGTCC--GTCTGATCT
*
11195754 TAGACAGGGAATGAACTCCGTATG
188 TAGACTGGGAATGAACTCCGTATG
11195778 TTTAGACTGG
Statistics
Matches: 445, Mismatches: 72, Indels: 35
0.81 0.13 0.06
Matches are distributed among these distances:
315 2 0.00
316 1 0.00
317 69 0.16
318 361 0.81
319 12 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (312 bp):
TCCTGCTGCCACAACCCTCGGTCCTGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
AACCCACGAAACGGGCGTGCGGCGCTCAGCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGA
CTCGATCCCCCCTACGTGCTGTCGATCCTACTACCGCAACCCTAGTCCGTCTGATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGAGCACTGAGCCGGACAGGAA
GGCATAATGCGCAACCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGCCAA
Found at i:11195578 original size:159 final size:156
Alignment explanation
Indices: 11194917--11195640 Score: 546
Period size: 159 Copynumber: 4.5 Consensus size: 156
11194907 CTATCGATCC
* * * * * **
11194917 TGCTATCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTA
1 TGCTGTCGATCCTACTG-CACAACCCTCAGTCCGTCT-GATCTTAGAC-TGGAATGAACTCCGTA
* * * *
11194982 TGCCTAAG-CGAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCAGAGAGGCAAAATGCGCA
63 TGCCTAAGTC-AACCCACGAAACGAGCGTGCGAGCGCTCAGCCGATCGGAAAGGCATAATGCGCA
* *
11195046 ACCTGGGGATCGACCCGATCCCCC-CATACA
127 ACCCGGGGATCGACCCGATCCCCCTC-TACG
* * * * * * * * *
11195076 TGCTGTCGATCCTGCTACCGCAACCCTTAGTCTGGTCCGATCTTAGATTGGGAATGAACTTCGCA
1 TGCTGTCGATCCTACT-GCACAACCCTCAGTC-CGTCTGATCTTAGACT-GGAATGAACTCCGTA
* * * * * *
11195141 TGCCTAAGTCAACCCACGAAACGAGCATGCGAGCGCTGAGCCGGTTAGG-GAGGCATAATGCGTA
63 TGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCC-GATCGGAAAGGCATAATGCGCA
** * *
11195205 AGTCGAGGATC-AGCCCGATCCCCCTCTGCG
127 ACCCGGGGATCGA-CCCGATCCCCCTCTACG
* * * ** * *
11195235 TGCTGCCAATCCTGCTGCCACAACCCTC-GATCC-TGCTGGGGCTTAGAGATGGAATGAACTCCC
1 TGCTGTCGATCCTACTG-CACAACCCTCAG-TCCGT-CT-GATCTTAGA-CTGGAATGAACTCCG
* * * * * *
11195298 TATGCCTAAGTCAACCCACGAAATGGGCGTGCGAGCGCTCAGCTGGTCGGAGAA-GTAGAATGCG
61 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGATCGGA-AAGGCATAATGCG
* * * *
11195362 CAAGCCGGGGATCGACTCGTTCCCCCTCCACG
125 CAACCCGGGGATCGACCCGATCCCCCTCTACG
11195394 TGCTGTCGATCCTACTGC-CGTAACCCTCAGTTCCGTCTGATCTTAGACTGGGAATGAACTCCGT
1 TGCTGTCGATCCTACTGCAC--AACCCTCAG-TCCGTCTGATCTTAGACT-GGAATGAACTCCGT
* * * * * * * * *
11195458 ATGCCTAGGTCAACCCATGAAATGAGCGTGTGGGCACTGAGCCGACCGGAAAGGCATAATGTGCA
62 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGATCGGAAAGGCATAATGCGCA
*
11195523 ACCCGGGGATCGACCCGATCCCCCTCTGCG
127 ACCCGGGGATCGACCCGATCCCCCTCTACG
* * * * * ** * **
11195553 TGCTGTCGGTCCCACTAGCACAACCCTCGGTCTGGCTAGGGCTTAGACATAGAATGAACTCTTTA
1 TGCTGTCGATCCTACT-GCACAACCCTCAGTCCGTCT-GATCTTAGAC-TGGAATGAACTCCGTA
* *
11195618 TGCCTAAGCCAACCCATGAAACG
63 TGCCTAAGTCAACCCACGAAACG
11195641 GGTGTGCTGG
Statistics
Matches: 443, Mismatches: 97, Indels: 50
0.75 0.16 0.08
Matches are distributed among these distances:
157 2 0.00
158 17 0.04
159 403 0.91
160 19 0.04
161 2 0.00
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (156 bp):
TGCTGTCGATCCTACTGCACAACCCTCAGTCCGTCTGATCTTAGACTGGAATGAACTCCGTATGC
CTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGATCGGAAAGGCATAATGCGCAACCC
GGGGATCGACCCGATCCCCCTCTACG
Found at i:11195672 original size:159 final size:155
Alignment explanation
Indices: 11194917--11195726 Score: 467
Period size: 159 Copynumber: 5.1 Consensus size: 155
11194907 CTATCGATCC
* * * * * * *
11194917 TGCTATCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTA
1 TGCTGTCGATCCTACTG-CACAACCCTCGATCTGGCT-GGGCTTAGACATGGAATGAACTCCCTA
* * * * * * *
11194982 TGCCTAAG-CGAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCAGAGAGGCAAAATGCGCA
64 TGCCTAAGTC-AACCCATGAAATGGGTGTGC-GGCACTCAGCAG-TCGGAGAGGCAAAATGCGCA
* * *
11195046 ACCTGGGGATCGACCCGATCCCCC-CATACA
126 ACCCGGGGATCGACCCGATCCCCCTC-TGCG
* * * * * ** * *
11195076 TGCTGTCGATCCTGCTACCGCAACCCT-TAGTCTGGTCCGATCTTAGA-TTGGGAATGAACTTCG
1 TGCTGTCGATCCTACT-GCACAACCCTCGA-TCTGG-CTGGGCTTAGACAT-GGAATGAAC-TCC
* * * ** * * * * *
11195139 C-ATGCCTAAGTCAACCCACGAAACGAGCATGCGAGCGCTGAGCCGGTTAGG-GAGGCATAATGC
61 CTATGCCTAAGTCAACCCATGAAATGGGTGTGCG-GCACTCAG-CAG-TCGGAGAGGCAAAATGC
* ** *
11195202 GTAAGTCGAGGATC-AGCCCGATCCCCCTCTGCG
123 GCAACCCGGGGATCGA-CCCGATCCCCCTCTGCG
* * * *
11195235 TGCTGCCAATCCTGCTGCCACAACCCTCGATCCT-GCTGGGGCTTAGAGATGGAATGAACTCCCT
1 TGCTGTCGATCCTACTG-CACAACCCTCGAT-CTGGCT-GGGCTTAGACATGGAATGAACTCCCT
* * * * * * *
11195299 ATGCCTAAGTCAACCCACGAAATGGGCGTGCGAGCGCTCAGCTGGTCGGAGAAGTAGAATGCGCA
63 ATGCCTAAGTCAACCCATGAAATGGGTGTGCG-GCACTCAGC-AGTCGGAGAGGCAAAATGCGCA
* * * **
11195364 AGCCGGGGATCGACTCGTTCCCCCTCCACG
126 ACCCGGGGATCGACCCGATCCCCCTCTGCG
* * * ** *
11195394 TGCTGTCGATCCTACTGC-CGTAACCCTCAGTTCCGTCTGATCTTAGAC-TGGGAATGAACTCCG
1 TGCTGTCGATCCTACTGCAC--AACCCTC-GATCTGGCTGGGCTTAGACAT-GGAATGAACTCCC
* * * * * * *
11195457 TATGCCTAGGTCAACCCATGAAATGAGCGTGTG-GGCACTGAGCCGACCGGAAAGGCATAATGTG
62 TATGCCTAAGTCAACCCATGAAATG-G-GTGTGCGGCACTCAGCAG-TCGGAGAGGCAAAATGCG
11195521 CAACCCGGGGATCGACCCGATCCCCCTCTGCG
124 CAACCCGGGGATCGACCCGATCCCCCTCTGCG
* * * * **
11195553 TGCTGTCGGTCCCACTAGCACAACCCTCGGTCTGGCTAGGGCTTAGACATAGAATGAACTCTTTA
1 TGCTGTCGATCCTACT-GCACAACCCTCGATCTGGCT-GGGCTTAGACATGGAATGAACTCCCTA
* * * * **
11195618 TGCCTAAGCCAACCCATGAAACGGGTGTGCTGGCCCTTAGGCAGTCGGAGAGGCAAAATGCATAA
64 TGCCTAAGTCAACCCATGAAATGGGTGTGC-GGCACTCA-GCAGTCGGAGAGGCAAAATGCGCAA
** * **
11195683 GTCGAGGATC-AGTTCGATCCCCC-CTGCG
127 CCCGGGGATCGA-CCCGATCCCCCTCTGCG
11195711 TGCTGTCGATCCTACT
1 TGCTGTCGATCCTACT
11195727 ACCGCAACCC
Statistics
Matches: 507, Mismatches: 109, Indels: 71
0.74 0.16 0.10
Matches are distributed among these distances:
157 6 0.01
158 41 0.08
159 429 0.85
160 26 0.05
161 5 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (155 bp):
TGCTGTCGATCCTACTGCACAACCCTCGATCTGGCTGGGCTTAGACATGGAATGAACTCCCTATG
CCTAAGTCAACCCATGAAATGGGTGTGCGGCACTCAGCAGTCGGAGAGGCAAAATGCGCAACCCG
GGGATCGACCCGATCCCCCTCTGCG
Found at i:11195793 original size:26 final size:26
Alignment explanation
Indices: 11195753--11195803 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
11195743 TAGTCTGATC
11195753 TTAGACAGGGAATGAACTCCGTATGT
1 TTAGACAGGGAATGAACTCCGTATGT
* * *
11195779 TTAGACTGGGGATGAACTTCGTATG
1 TTAGACAGGGAATGAACTCCGTATG
11195804 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACAGGGAATGAACTCCGTATGT
Found at i:11196585 original size:26 final size:26
Alignment explanation
Indices: 11196549--11196601 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11196539 TTGGTCCGAT
11196549 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
11196575 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11196601 C
1 C
11196602 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11197106 original size:185 final size:185
Alignment explanation
Indices: 11196758--11197122 Score: 484
Period size: 185 Copynumber: 2.0 Consensus size: 185
11196748 TCCGGCTGGG
* * *
11196758 GCTTAGACATGGAATGACCTCCGTATGCCTAAGCCAACCCATAAAACGAGTGTGCAGGCACTCAG
1 GCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCAGGCACTCAG
* ** *
11196823 CCGACTGGAGAGGCAGAATGTGCAAGCCGAGGATCAGCCCGATCCCCCCTTGCGTGCTATCAATC
66 CCGACTGGAGAGACAGAATGCACAAGCCGAGGATCAGCCCGATCCCCCCTTGCGTACTATCAATC
* * *** *
11196888 CTGCTGTCCCAACCTTTGGTCCGGTCCGATCTTAGACT-AGCAATGAACTCCGTAT
131 CTGCTATCCCAACCCTCAATCCGGTCCGATCTTAGAATGAG-AATGAACTCCGTAT
* *
11196943 GCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-GGGAGCTCA
1 GCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCAGGCA-CTCA
* * * *
11197007 GCCGACTGGAGAGACAGAATGCACAAGCCGAGGATCAGCCCGGT-CCCCCTCTGTGTACTGTCGA
65 GCCGACTGGAGAGACAGAATGCACAAGCCGAGGATCAGCCCGATCCCCCCT-TGCGTACTATCAA
* * *
11197071 TCCTGCTATCGCAACCCTCAATCTGGTCTGATCTTAGAATGAGAATGAACTC
129 TCCTGCTATCCCAACCCTCAATCCGGTCCGATCTTAGAATGAGAATGAACTC
11197123 TGCATGCCTA
Statistics
Matches: 155, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
184 9 0.06
185 144 0.93
186 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (185 bp):
GCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCAGGCACTCAG
CCGACTGGAGAGACAGAATGCACAAGCCGAGGATCAGCCCGATCCCCCCTTGCGTACTATCAATC
CTGCTATCCCAACCCTCAATCCGGTCCGATCTTAGAATGAGAATGAACTCCGTAT
Found at i:11197245 original size:159 final size:159
Alignment explanation
Indices: 11196944--11198251 Score: 997
Period size: 159 Copynumber: 8.2 Consensus size: 159
11196934 ACTCCGTATG
* * * *
11196944 CTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * * * * *
11197009 CGACTGGAGAGACAGAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTCTGTGTACTGTCGATCC
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATCC
* * * *
11197074 TGCTATCGCAACCCTCAATCTGGTCT-GAT
131 -GCTACCACAACCCTCGATCCGGTCTGGAT
* * ** * * *
11197103 CTTAGA-ATGAGAATGAACTCTGCATGCCTAAGTTAACCCACGAAATGAGCGTGCGGGAGGTGAG
1 CTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * *
11197167 CCGACCGGAGAGGCATAATGCACAAGCTGGGGATCGGCCCGATCCCCCTCTGCGTGCTATTGGTC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATC
* **
11197232 TCACTACCACAACCCTCGATCCGG-CTGGGG
130 -CGCTACCACAACCCTCGATCCGGTCTGGAT
* * * *
11197262 GTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * ** * * * *
11197327 CGATCGGAGAGGTAGAATGCGTAAGCTAGGGTTCGACCCAGTCCCTCC-CTACGTGCTATCGATC
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCC-CCTCTGCGTGCTATCGA--
* * **
11197391 CTGCTGCTGGTCTTACTGCCACAACCCTCGGTTCGGT-TCAAT
128 -T-C--C--G-C-TA---CCACAACCCTCGATCCGGTCTGGAT
* * *
11197433 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGAGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * * *
11197498 CGATCGGAGAGGCAGAATGCGTAAGCCAGGGAACGGCCCGGT--CCCTCATGCGTACTGTCGATC
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTC-TGCGTGCTATCGATC
** * ** *
11197561 CTGCTGTCGCAACCCTCGATTTGATCT-GAT
130 C-GCTACCACAACCCTCGATCCGGTCTGGAT
* * * * * ** * *
11197591 TTTAGA-ATGGGAATGAACTTCGTATGCCTAAGTCATCTCATAAAATGAGCGTGCGGGCGTTGA-
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * * * * * * *
11197654 CCAGGCCGAAAAGGCATAATGCGCAAGTCGGGGTTTGGCCTGATCCCCCTCTGCGTGCTGTCGGT
65 CC-GACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGAT
* *
11197719 CCCGCTACCACAACCCTC-AGTCCGAT-TAGGGT
129 -CCGCTACCACAACCCTCGA-TCCGGTCT-GGAT
* * * * * *
11197751 -TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCCCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * *
11197815 CGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCTGGTCCCCC-CTGCGTGCTACCGATCC
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATCC
* * *
11197879 TGCTGCCGCAACCCTCGATCCGGT-TTGAT
131 -GCTACCACAACCCTCGATCCGGTCTGGAT
** * * * * *
11197908 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAATGAGCGAGCAGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * *
11197972 CC-AGCCGAAGAGGCATAATGCGCAAGCCGGGAATCGACCCGGTCCCCCTCTGCGTGCTATCGAT
65 CCGA-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGAT
* * **
11198036 CCCCCTACCATAACCCTC-AGTCCGG-CTGGGG
129 -CCGCTACCACAACCCTCGA-TCCGGTCTGGAT
* * *
11198067 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
** * *
11198132 C-AGCTAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGT-CCCCTCTGCGTGCTACCGATC
66 CGA-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATC
*** * ** *
11198195 CTGCTACTGTAACCCTCGGTCTAGTC-CGAT
130 C-GCTACCACAACCCTCGATCCGGTCTGGAT
*
11198225 CTTAGAC-TGAGAATGAACTCCATATGC
1 CTTAGACATG-GAATGAACTCCGTATGC
11198252 TTAGACTGGG
Statistics
Matches: 903, Mismatches: 201, Indels: 91
0.76 0.17 0.08
Matches are distributed among these distances:
157 14 0.02
158 280 0.31
159 450 0.50
160 22 0.02
161 1 0.00
162 2 0.00
163 2 0.00
164 2 0.00
166 1 0.00
167 2 0.00
168 4 0.00
169 2 0.00
170 10 0.01
171 111 0.12
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATCC
GCTACCACAACCCTCGATCCGGTCTGGAT
Found at i:11197729 original size:488 final size:487
Alignment explanation
Indices: 11196944--11197884 Score: 1266
Period size: 488 Copynumber: 1.9 Consensus size: 487
11196934 ACTCCGTATG
*
11196944 CTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGC
1 CTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGAGCTCAGC
* *
11197009 CGACTGGAGAGACAGAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTCTGTGTACTGTCGATCC
66 CGACTGGAGAGACAGAATGCACAAGCCGAGGAACAGCCCGGT-CCCCTCTGCGTACTGTCGATCC
* *
11197074 TGCTATCGCAACCCTCAATCTGGTCTGATCTTAGAATGAGAATGAACTCTGCATGCCTAAGTTAA
130 TGCTATCGCAACCCTCAATCTGATCTGATCTTAGAATGAGAATGAACTCTGCATGCCTAAGTCAA
* * *
11197139 CCCACGAAATGAGCGTGCGGGAGGTGAGCCGACCGGAGAGGCATAATGCACAAGCTGGGGATCGG
195 CCCACAAAATGAGCGTGCGGGAGGTGAGCCGACCGAAAAGGCATAATGCACAAGCTGGGGATCGG
* * * *
11197204 CCCGATCCCCCTCTGCGTGCTATTGGTCTCACTACCACAACCCTC-GATCCGGCTGGGGGTTAGA
260 CCCGATCCCCCTCTGCGTGCTATCGGTCCCACTACCACAACCCTCAG-TCCGACTAGGGGTTAGA
* * *
11197268 CATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGATCG
324 CATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATACGGGCCCTCAACCGATCG
* * * *
11197333 GAGAGGTAGAATGCGTAAGCTAGGGTTCGACCCAGTCCCTCCCTACGTGCTATCGATCCTGCTGC
389 GAGAGGCAGAATGCGTAAGCCAGGGATCGACCCAGTCCC-CCCTACGTGCTACCGATCCTGCTGC
11197398 TGGTCTTACTGCCACAACCCTCGGTTCGGTTCAAT
453 TGGTCTTACTGCCACAACCCTCGGTTCGGTTCAAT
* * * *
11197433 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGAGCGCTCAGC
1 CTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGAGCTCAGC
* ** *
11197498 CGA-TCGGAGAGGCAGAATGCGTAAGCC-AGGGAACGGCCCGGT-CCCTCATGCGTACTGTCGAT
66 CGACT-GGAGAGACAGAATGCACAAGCCGA-GGAACAGCCCGGTCCCCTC-TGCGTACTGTCGAT
* * * * * *
11197560 CCTGCTGTCGCAACCCTCGATTTGATCTGATTTTAGAATGGGAATGAACT-TCGTATGCCTAAGT
128 CCTGCTATCGCAACCCTCAATCTGATCTGATCTTAGAATGAGAATGAACTCT-GCATGCCTAAGT
* * * * * * *
11197624 CATCTCATAAAATGAGCGTGCGGGCGTTGA-CCAGGCCGAAAAGGCATAATGCGCAAG-TCGGGG
192 CAACCCACAAAATGAGCGTGCGGGAGGTGAGCC-GACCGAAAAGGCATAATGCACAAGCT-GGGG
* * * * * * *
11197687 TTTGGCCTGATCCCCCTCTGCGTGCTGTCGGTCCCGCTACCACAACCCTCAGTCCGATTAGGGTT
255 ATCGGCCCGATCCCCCTCTGCGTGCTATCGGTCCCACTACCACAACCCTCAGTCCGACTAGGGGT
* * *
11197752 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCCCTCAACCG
320 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATACGGGCCCTCAACCG
* ** *
11197817 ATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCTGGTCCCCCCTGCGTGCTACCGATCCTGC
385 ATCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCAGTCCCCCCTACGTGCTACCGATCCTGC
11197882 TGC
450 TGC
11197885 CGCAACCCTC
Statistics
Matches: 391, Mismatches: 54, Indels: 16
0.85 0.12 0.03
Matches are distributed among these distances:
487 32 0.08
488 265 0.68
489 94 0.24
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (487 bp):
CTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGAGCTCAGC
CGACTGGAGAGACAGAATGCACAAGCCGAGGAACAGCCCGGTCCCCTCTGCGTACTGTCGATCCT
GCTATCGCAACCCTCAATCTGATCTGATCTTAGAATGAGAATGAACTCTGCATGCCTAAGTCAAC
CCACAAAATGAGCGTGCGGGAGGTGAGCCGACCGAAAAGGCATAATGCACAAGCTGGGGATCGGC
CCGATCCCCCTCTGCGTGCTATCGGTCCCACTACCACAACCCTCAGTCCGACTAGGGGTTAGACA
TGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATACGGGCCCTCAACCGATCGGA
GAGGCAGAATGCGTAAGCCAGGGATCGACCCAGTCCCCCCTACGTGCTACCGATCCTGCTGCTGG
TCTTACTGCCACAACCCTCGGTTCGGTTCAAT
Found at i:11197836 original size:317 final size:316
Alignment explanation
Indices: 11197433--11198251 Score: 987
Period size: 317 Copynumber: 2.6 Consensus size: 316
11197423 TCGGTTCAAT
* * * *
11197433 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGAGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * **
11197498 CGATCGGAGAGGCAGAATGCGTAAGCCAGGGAACGGCCCGGTCCCTCATGCGTACTGTCGATCCT
66 CGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCTC-TGCGTGCTACCGATCCT
* ** * * *
11197563 GCTGTCGCAACCCTCGATTTGATCTGATTTTAGAATGGGAATGAACTTCGTATGCCTAAGTCATC
130 GCTGCCGCAACCCTCGATCCGATCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * ** * ** * *
11197628 TCATAAAATGAGCGTGCGGGCGTTGA-CCAGGCCGAAAAGGCATAATGCGCAAGTCGGGGTTTGG
195 CCATAAAATGAGCGAGCAGGCACTGAGCCA-GCCGAAAAGGCATAATGCGCAAGCCGGGAATCGA
* * * * *
11197692 CCTGATCCCCCTCTGCGTGCTGTCGGTCCCGCTACCACAACCCTCAGTCCGATTAGGG
259 CCCGATCCCCCTCTGCGTGCTATCGATCCCCCTACCACAACCCTCAGTCCGACTAGGG
* * * * * *
11197750 TTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCCCTCAAC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * *
11197815 CGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCTGGTCCCCCCTGCGTGCTACCGATCCT
66 CGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGT-CCCTCTGCGTGCTACCGATCCT
* * * *
11197880 GCTGCCGCAACCCTCGATCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAAC
130 GCTGCCGCAACCCTCGATCCGATCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAAC
* *
11197945 CCATGAAATGAGCGAGCAGGCACTGAGCCAGCCGAAGAGGCATAATGCGCAAGCCGGGAATCGAC
195 CCATAAAATGAGCGAGCAGGCACTGAGCCAGCCGAAAAGGCATAATGCGCAAGCCGGGAATCGAC
* * * *
11198010 CCGGTCCCCCTCTGCGTGCTATCGATCCCCCTACCATAACCCTCAGTCCGGCTGGGG
260 CCGATCCCCCTCTGCGTGCTATCGATCCCCCTACCACAACCCTCAGTCCGACTAGGG
* *
11198067 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * *
11198132 C-AGCTAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCTCTGCGTGCTACCGATCC
66 CGATC-GGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGT-CCCTCTGCGTGCTACCGATCC
* * * * * * * * *
11198196 TGCTACTGTAACCCTCGGT-CTAGTCCGATCTTAGACTGAGAATGAACTCCATATGC
129 TGCTGCCGCAACCCTCGATCCGA-TCTGATCTTAGAATGGGAATGAACTCCGTATGC
11198252 TTAGACTGGG
Statistics
Matches: 424, Mismatches: 74, Indels: 8
0.84 0.15 0.02
Matches are distributed among these distances:
316 3 0.01
317 414 0.98
318 7 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (316 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCTCTGCGTGCTACCGATCCTG
CTGCCGCAACCCTCGATCCGATCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACC
CATAAAATGAGCGAGCAGGCACTGAGCCAGCCGAAAAGGCATAATGCGCAAGCCGGGAATCGACC
CGATCCCCCTCTGCGTGCTATCGATCCCCCTACCACAACCCTCAGTCCGACTAGGG
Found at i:11197992 original size:158 final size:158
Alignment explanation
Indices: 11197409--11198251 Score: 668
Period size: 158 Copynumber: 5.3 Consensus size: 158
11197399 GGTCTTACTG
* * *
11197409 CCACAACCCTCGGTTCGGTTCAATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGATCCGGTTCGATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * * * * * * *
11197474 GAAATGAGCGTGTGAGCGCTCAGCC-GATCGGAGAGGCAGAATGCGTAAGCCAGGGAACGGCCCG
66 GAAATGAGCGAGCGGGCGCTCAGCCAG-CCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCG
* * * * *
11197538 GTCCCTCATGCGTACTGTCGATCCTGCTG
130 GTCCCCCCTGCGTGCTATCGATCCTGCTA
* * ** * * * * * *
11197567 TCGCAACCCTCGAT-TTGATCTGATTTTAGA-ATGGGAATGAACTTCGTATGCCTAAGTCATCTC
1 CCACAACCCTCGATCCGGTTC-GATCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * * * * * *
11197630 ATAAAATGAGCGTGCGGGCGTTGA-CCAGGCCGAAAAGGCATAATGCGCAAGTCGGGGTTTGGCC
64 ATGAAATGAGCGAGCGGGCGCTCAGCCA-GCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCC
* * * * *
11197694 TGATCCCCCTCTGCGTGCTGTCGGTCCCGCTA
128 CGGTCCCCC-CTGCGTGCTATCGATCCTGCTA
* * * *
11197726 CCACAACCCTC-AGTCCGATTAGGGT-TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
1 CCACAACCCTCGA-TCCGGTT-CGATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * * * * * *
11197789 ACGAAACGGGC-ATGCGGGCCCTCAACC-GATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGAC
64 ATGAAATGAGCGA-GCGGGCGCTCAGCCAG-CCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGC
* * *
11197852 CTGGTCCCCCCTGCGTGCTACCGATCCTGCTG
127 CCGGTCCCCCCTGCGTGCTATCGATCCTGCTA
* * **
11197884 CCGCAACCCTCGATCCGGTTTGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTTAACCCA
1 CCACAACCCTCGATCCGGTTCGATCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * *
11197948 TGAAATGAGCGAGCAGGCACTGAGCCAGCCGAAGAGGCATAATGCGCAAGCCGGGAATCGACCCG
65 TGAAATGAGCGAGCGGGCGCTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCG
**
11198013 GTCCCCCTCTGCGTGCTATCGATCCCCCTA
130 GTCCCCC-CTGCGTGCTATCGATCCTGCTA
* * * ** *
11198043 CCATAACCCTC-AGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 CCACAACCCTCGA-TCCGGTTCGATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * *
11198107 CGAAATGAGCGTA-CGGGTGCTCAGCCAG-CTAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCC
65 TGAAATGAGCG-AGCGGGCGCTCAGCCAGCCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGGCC
* *
11198170 CGGTCCCCTCTGCGTGCTACCGATCCTGCTA
128 CGGTCCCCCCTGCGTGCTATCGATCCTGCTA
*** * ** * *
11198201 CTGTAACCCTCGGTCTAGTCCGATCTTAGAC-TGAGAATGAACTCCATATGC
1 CCACAACCCTCGATCCGGTTCGATCTTAGACATG-GAATGAACTCCGTATGC
11198252 TTAGACTGGG
Statistics
Matches: 532, Mismatches: 129, Indels: 48
0.75 0.18 0.07
Matches are distributed among these distances:
157 12 0.02
158 276 0.52
159 235 0.44
160 9 0.02
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CCACAACCCTCGATCCGGTTCGATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
GAAATGAGCGAGCGGGCGCTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGG
TCCCCCCTGCGTGCTATCGATCCTGCTA
Found at i:11198266 original size:26 final size:26
Alignment explanation
Indices: 11198225--11198277 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11198215 CTAGTCCGAT
11198225 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* * *
11198251 CTTAGACTGGGGATGAACTCCTTATG
1 CTTAGACTGAGAATGAACTCCATATG
11198277 C
1 C
11198278 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:11198377 original size:26 final size:26
Alignment explanation
Indices: 11198335--11198387 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11198325 GGCTCAAAAT
*
11198335 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
11198361 CTTAGACAT-GGATTGAACTCCGCATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
11198387 C
1 C
11198388 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:11198883 original size:25 final size:26
Alignment explanation
Indices: 11198835--11198886 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11198825 CTGGTTCGAT
11198835 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAATTCCGTATG
11198861 CTTAGACTGGG-ATGAACTT-CGTATG
1 CTTAGACTGGGAATGAA-TTCCGTATG
11198886 C
1 C
11198887 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 12 0.48
26 13 0.52
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAATTCCGTATG
Found at i:11199526 original size:158 final size:158
Alignment explanation
Indices: 11199218--11199877 Score: 429
Period size: 158 Copynumber: 4.2 Consensus size: 158
11199208 TGGAATGAAC
** * * **
11199218 ATCCGTATGCTTAGACAT-GGAATGAACTCCGTATG-CTAAGCCAGCCCACGAAACGAGCGTGCG
1 ATCCG-AT-CTTAGAC-TGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAACGAACG
* * * ** * * * * * * *
11199281 GGCACTCAGCC-AGCCAGAGAGGCAGAATACGTAAGTCGAGGATCAGCTTGGTCCCCCCTGCATG
63 GACACTGAGCCGA-CCAGAGAGGCATAACGCGCAAGCCGGGGATCAACCTGGTCCCCCCTACGTG
* *
11199345 CTGTCGATCTTACTGCCACAACCCTCGGTCTG
127 CTGTCGATCCTACTGCCACAACCCTCAGTCTG
* * * * * *
11199377 GTCCGATCTTAGACTGGGAATGATCTCCGTATGCCTAAGTCAACCCATGAAATGAATGTAA-GGA
1 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAACG-AACGGA
** *** * * *
11199441 CGTTGAGCCGATTGGAGCGGCATAATGTGCAAGCCGGGGATCAACCTGGTCCCCCCTACGTGCTG
65 CACTGAGCCGACCAGAGAGGCATAACGCGCAAGCCGGGGATCAACCTGGTCCCCCCTACGTGCTG
* * **
11199506 TTGATCCTGCTGCCGTAACCCTCAGTCTG
130 TCGATCCTACTGCCACAACCCTCAGTCTG
* *
11199535 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAACGAACGGGC
1 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAACGAACGGAC
* * * *
11199600 ACTGAGCCGGCCAGAGAGGCATAACGCGTAAGCCGGGGATCGACCTGGTCCCCCTCTACGTGCTA
66 ACTGAGCCGACCAGAGAGGCATAACGCGCAAGCCGGGGATCAACCTGGTCCCCC-CTACGTGCTG
* ** *
11199665 TCGGTCCCGCTACCACAACCCTC-GATCT-
130 TCGATCCTACTGCCACAACCCTCAG-TCTG
* * ** * * * ** * **
11199693 AGCTAGGGCTTAGACAT-GGAATTAACTCCCTATGGCTAAGCCAACCCACGAAATGAACGTGCGG
1 ATC-CGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAACGAACGG
*** * * * * ** * * *
11199757 GTGCTCAGTCGACCGGAGAGGCAGAATC-CGCAAGCCGGGGATCGGCCCGCTCCCCCCTGCGTGC
64 ACACTGAGCCGACCAGAGAGGCATAA-CGCGCAAGCCGGGGATCAACCTGGTCCCCCCTACGTGC
* * * ** * *
11199821 TGCCGATCATGCTGCCGTAACCCTCGGTC-C
128 TGTCGATCCTACTGCCACAACCCTCAGTCTG
**
11199851 AGTCTAATCTTAGACTGGGAATGAACT
1 A-TCCGATCTTAGACTGGGAATGAACT
11199878 TCATATGCTT
Statistics
Matches: 389, Mismatches: 98, Indels: 29
0.75 0.19 0.06
Matches are distributed among these distances:
156 1 0.00
157 26 0.07
158 234 0.60
159 126 0.32
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
ATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAACGAACGGAC
ACTGAGCCGACCAGAGAGGCATAACGCGCAAGCCGGGGATCAACCTGGTCCCCCCTACGTGCTGT
CGATCCTACTGCCACAACCCTCAGTCTG
Found at i:11199895 original size:26 final size:26
Alignment explanation
Indices: 11199859--11199911 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11199849 CCAGTCTAAT
11199859 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
* *
11199885 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
11199911 C
1 C
11199912 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:11200918 original size:26 final size:26
Alignment explanation
Indices: 11200882--11200936 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
11200872 TCCCCCTGTG
*
11200882 TGCTTAGACTGGGAAAGAACTTCATA
1 TGCTTAGACTGGGAAAGAACTCCATA
* *
11200908 TGCTTAGACTGGGGATGAACTCCATA
1 TGCTTAGACTGGGAAAGAACTCCATA
11200934 TGC
1 TGC
11200937 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TGCTTAGACTGGGAAAGAACTCCATA
Found at i:11201792 original size:26 final size:26
Alignment explanation
Indices: 11201763--11201815 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11201753 CCGGTCAAAT
*
11201763 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
* * *
11201789 CTTAGACTGGGGATTAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
11201815 C
1 C
11201816 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:11202531 original size:26 final size:26
Alignment explanation
Indices: 11202479--11202531 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
11202469 GTTGGCTTAG
* * *
11202479 GCATACGAAGTTCATTCCCTCTTTAA
1 GCATACGAAGCTCATTCCCACTCTAA
* *
11202505 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCACTCTAA
11202531 G
1 G
11202532 AGTTTGAGCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCACTCTAA
Found at i:11204086 original size:171 final size:170
Alignment explanation
Indices: 11203779--11204086 Score: 375
Period size: 171 Copynumber: 1.8 Consensus size: 170
11203769 TCGAGGGTTG
* *
11203779 CGGCAGCAGGATCGGCAGCATGCAGGGGGGACCGAGCTGATCCCCGACTTACGCATTCTGCCTCT
1 CGGCAGCAGGATCGGCAGCACGCAGGGGGGACCGAGCTGATCCCCGACTTACGCATTATGCCTCT
* * * * * * *
11203844 CTGATCGACTGAGCGCCCGTACCCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCAT
66 CCGATCGACTGAGCACCCGTACCCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCAT
11203909 GTCTAAGGCCCAATCTGACCGAGGGTTGTGGAAGAAGGAC
131 GTCTAAGGCCCAATCTGACCGAGGGTTGTGGAAGAAGGAC
* * * * * * * * *
11203949 CGGCAGCGGGATCGGTAGCACGTAGAGGGGGATCGGGTTGATCCTCGGCTTGCGCATTATGCCTC
1 CGGCAGCAGGATCGGCAGCACGCAG-GGGGGACCGAGCTGATCCCCGACTTACGCATTATGCCTC
* ** ** *
11204014 TCCGGTCGGTTGAGCACCCGTATGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCC
65 TCCGATCGACTGAGCACCCGTACCCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCAT-CCC
11204079 A-GTCTAAG
129 ATGTCTAAG
11204087 TATATAGAGT
Statistics
Matches: 112, Mismatches: 24, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
170 21 0.19
171 88 0.79
172 3 0.03
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (170 bp):
CGGCAGCAGGATCGGCAGCACGCAGGGGGGACCGAGCTGATCCCCGACTTACGCATTATGCCTCT
CCGATCGACTGAGCACCCGTACCCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCAT
GTCTAAGGCCCAATCTGACCGAGGGTTGTGGAAGAAGGAC
Found at i:11204565 original size:158 final size:155
Alignment explanation
Indices: 11204093--11204588 Score: 480
Period size: 158 Copynumber: 3.1 Consensus size: 155
11204083 TAAGTATATA
* * * * *
11204093 GAGTTCATTCCTAGTCTAAGATCAGATTGGACTGAGGGTTACGGCAGCAGGATTGACAGCACGCA
1 GAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCA
* * * * * *
11204158 GGGGGGA-TCGGGCCAATCTCCAGCTTGCGCATTTTGCCTCTCTGACCGG-TCGAGCGCCTGCAC
66 GGGGGGACT-AGGCCGATC-CCGGCTTGCGCATTATGCCTCTCAG-CCGGCT-GAGCGCC-GCAT
* *
11204221 GCCCGTTTCGTGGGTTGGCTTAGGCATAGG
126 GCTCGTTTCGTGGGTTGGCTTAGGCATACG
* ** * * *
11204251 GAGTTCATT-CAATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGATAGCGGGATC-AGCAGCAC
1 GAGTTCATTCCTA-GTCTAAG-ATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGA-CAGCAC
* * * * * * *
11204313 ACAGAGGGGGACCAAGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGTGCTCGC
63 GCAG-GGGGGACTAGGCCGAT-CCCGGCTTGCGCATTATGCCTC-TCAGCCGGCTGAGCGC-CGC
* * *
11204378 ATGCTCATTTCGTGGGTTGACTTATGCATACG
124 ATGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* * *
11204410 GAGTTAATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGATAGCACGCA
1 GAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCA
* * * *
11204475 GGGGGGACTAGGCCGATCCCTGGCTTACACATTCTGCCTCTCCAGCCGGCTGAGCACCGACATGC
66 GGGGGGACTAGGCCGATCCC-GGCTTGCGCATTATGCCTCT-CAGCCGGCTGAGCGCCG-CATGC
*
11204540 TTGTTTCGTGGGTTGGCTTAGGCATACG
128 TCGTTTCGTGGGTTGGCTTAGGCATACG
*
11204568 GAGTTCATTCCCAGTCTAAGA
1 GAGTTCATTCCTAGTCTAAGA
11204589 ATTTGAGCGA
Statistics
Matches: 269, Mismatches: 54, Indels: 30
0.76 0.15 0.08
Matches are distributed among these distances:
157 9 0.03
158 136 0.51
159 115 0.43
160 9 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (155 bp):
GAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCA
GGGGGGACTAGGCCGATCCCGGCTTGCGCATTATGCCTCTCAGCCGGCTGAGCGCCGCATGCTCG
TTTCGTGGGTTGGCTTAGGCATACG
Found at i:11205473 original size:26 final size:25
Alignment explanation
Indices: 11205437--11205515 Score: 95
Period size: 26 Copynumber: 3.0 Consensus size: 25
11205427 GTTGACTTAG
*
11205437 GCATATAGAGTTCATCCCTAGTCTAA
1 GCATATGGAGTTCATCCC-AGTCTAA
*
11205463 GCATATGGAGTTCATCCCCAGTATAA
1 GCATATGGAGTTCAT-CCCAGTCTAA
* *
11205489 GCATACGGAATTCATTCCCAGTCTAA
1 GCATATGGAGTTCA-TCCCAGTCTAA
11205515 G
1 G
11205516 ATCGGATCAG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 42 0.91
27 4 0.09
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (25 bp):
GCATATGGAGTTCATCCCAGTCTAA
Found at i:11206204 original size:26 final size:26
Alignment explanation
Indices: 11206168--11206220 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11206158 GTTGACTTAG
11206168 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
11206194 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
11206220 G
1 G
11206221 ATTGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:11206576 original size:159 final size:157
Alignment explanation
Indices: 11206200--11206602 Score: 344
Period size: 159 Copynumber: 2.5 Consensus size: 157
11206190 CTAAGCATAT
** * * * * *
11206200 GGAGTTCATTCCCAGTCTAAGATTGGATTGGATCAAGGGTTGCGGTAGCAGGATCGGTAGCACGC
1 GGAGTTCATT-CCAGTCTAAGATCAGACTGGATCGAGGGTTGTGGTAGCAGGATCGATAGCACAC
* * * * * *
11206265 AGAGGGGATCGGGCCGATCCCCAGATTGCACATTCTGCCTCTCCGGTCGGCTGAACGCCCGCACG
65 AAAGGGGACCGGGCCGATCCCCAGATTGCACATTCTACCTCTCCGGCCGGCTCAACGCCCGCACA
* * * *
11206330 CCCGTTTCGTGGGTTGGCTTAGGCATAG
130 CCCGTTTCATGGGTTGACTTAGGCAAAC
* ** * * * * **
11206358 GGAGTTCGTTCCATGTCTAAGCCCCAGTC-AGACCGAGGGTTGTGGCAGTGGGA-CTGATAGCAC
1 GGAGTTCATTCCA-GTCTAAG-ATCAGACTGGATCGAGGGTTGTGGTAGCAGGATC-GATAGCAC
* ** * * ** * * *
11206421 ACAAAGAGGGACCGGGCTGATCTTCGGTTTGTGCATTAC-ACCTCTCCGGCCGGTTCAGCGCTCG
63 ACAAAG-GGGACCGGGCCGATCCCCAGATTGCACATT-CTACCTCTCCGGCCGGCTCAACGCCCG
* *
11206485 TACACTCGTTTCATGGGTTGACTTAGGCAAAC
126 CACACCCGTTTCATGGGTTGACTTAGGCAAAC
*
11206517 GGAGTTCATTCCTAGTCTAAGATCAGACTGGATCGAGGGTTGTGGTAGCAGGATCGATAGCACGC
1 GGAGTTCATTCC-AGTCTAAGATCAGACTGGATCGAGGGTTGTGGTAGCAGGATCGATAGCACAC
** *
11206582 AGGGGGGATCGGGCCGATCCC
65 AAAGGGGACCGGGCCGATCCC
11206603 TGGCTTGCGT
Statistics
Matches: 183, Mismatches: 54, Indels: 16
0.72 0.21 0.06
Matches are distributed among these distances:
157 4 0.02
158 61 0.33
159 115 0.63
160 3 0.02
ACGTcount: A:0.20, C:0.25, G:0.32, T:0.23
Consensus pattern (157 bp):
GGAGTTCATTCCAGTCTAAGATCAGACTGGATCGAGGGTTGTGGTAGCAGGATCGATAGCACACA
AAGGGGACCGGGCCGATCCCCAGATTGCACATTCTACCTCTCCGGCCGGCTCAACGCCCGCACAC
CCGTTTCATGGGTTGACTTAGGCAAAC
Found at i:11206679 original size:158 final size:157
Alignment explanation
Indices: 11206194--11206695 Score: 417
Period size: 158 Copynumber: 3.2 Consensus size: 157
11206184 CCCAGTCTAA
** * * * *
11206194 GCATATGGAGTTCATTCCCA-GTCTAAGATTGGATTGGATCAAGGGTTGCGGTAGCAGGATCGGT
1 GCATATGGAGTTCATT-CCATGTCTAAGATCAGACTGGATCGAGGGTTGTGGTAGCAGGATCGAT
* ** * * * *
11206258 AGCACGCAGAGGGGATCGGGCCGATCCCCAGATTGCACATTCTGCCTCTCCGGTCGGCTGAACGC
65 AGCACGCAGGGGGGATCGGGCCGATCCCTGGATTGCGCATTCTGCCTCTCCGGTCGGTTGGACAC
* *
11206323 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CCACA-GCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * * **
11206352 GCATAGGGAGTTCGTTCCATGTCTAAGCCCCAGTC-AGACCGAGGGTTGTGGCAGTGGGA-CTGA
1 GCATATGGAGTTCATTCCATGTCTAAG-ATCAGACTGGATCGAGGGTTGTGGTAGCAGGATC-GA
* * * * * * * * * *
11206415 TAGCACACAAAGAGGGACCGGGCTGAT-CTTCGGTTTGTGCATTAC-ACCTCTCCGGCCGGTTCA
64 TAGCACGC-AGGGGGGATCGGGCCGATCCCT-GGATTGCGCATT-CTGCCTCTCCGGTCGGTT--
* ** * *
11206478 GCG-CTCGTACA-CTCGTTTCATGGGTTGACTTAG
124 G-GACACCCACAGCTCGTTTCGTGGGTTGGCTTAG
* *
11206511 GCAAACGGAGTTCATTCC-TAGTCTAAGATCAGACTGGATCGAGGGTTGTGGTAGCAGGATCGAT
1 GCATATGGAGTTCATTCCAT-GTCTAAGATCAGACTGGATCGAGGGTTGTGGTAGCAGGATCGAT
* * * *
11206575 AGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGTAGTCTGCCTCTCCGATCGGTTGGACAC
65 AGCACGCAGGGGGGATCGGGCCGATCCCTGGATTGCGCATTCTGCCTCTCCGGTCGGTTGGACAC
11206640 CCACATGCTCGTTTCGTGGGTTGGCTTAG
130 CCACA-GCTCGTTTCGTGGGTTGGCTTAG
*
11206669 GTATATGGAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCATGTCTAAG
11206696 CATACGGAGT
Statistics
Matches: 255, Mismatches: 71, Indels: 36
0.70 0.20 0.10
Matches are distributed among these distances:
155 1 0.00
156 6 0.02
157 5 0.02
158 129 0.51
159 107 0.42
160 2 0.01
161 5 0.02
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (157 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCAGACTGGATCGAGGGTTGTGGTAGCAGGATCGATA
GCACGCAGGGGGGATCGGGCCGATCCCTGGATTGCGCATTCTGCCTCTCCGGTCGGTTGGACACC
CACAGCTCGTTTCGTGGGTTGGCTTAG
Found at i:11207000 original size:12 final size:12
Alignment explanation
Indices: 11206983--11207007 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
11206973 GACTTAGGCA
11206983 TACGGAGTTCAT
1 TACGGAGTTCAT
11206995 TACGGAGTTCAT
1 TACGGAGTTCAT
11207007 T
1 T
11207008 CCCAGTCTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (12 bp):
TACGGAGTTCAT
Found at i:11207347 original size:26 final size:26
Alignment explanation
Indices: 11207310--11207362 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11207300 GTTGGTTTAG
*
11207310 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
11207336 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
11207362 G
1 G
11207363 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:11207719 original size:26 final size:26
Alignment explanation
Indices: 11207690--11207742 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11207680 GTTGACTTAG
* *
11207690 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
11207716 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
11207742 G
1 G
11207743 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:11208891 original size:158 final size:158
Alignment explanation
Indices: 11208638--11209085 Score: 461
Period size: 158 Copynumber: 2.8 Consensus size: 158
11208628 GGTTGCGGCC
* * * * * * * *
11208638 GCAGGATCGACAGCACGCAGGGGGACCAGGCCGATTCCCGGCTTGCACATTCTGCCTCTTCGGTC
1 GCAGGATCGATAACACGCAGGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGGCC
* * * * * * *
11208703 GGTTGAGTGCCTGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
66 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
11208768 GCCCCAG-CCGAACTGAGGGTTATGGTA
131 GCACCAGACCGAACCGAGGGTTATGATA
* * *
11208795 GCGGGATCGGTAACACGCAGAGGGGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGGC
1 GCAGGATCGATAACACGCAG-GGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGGC
* * * * *
11208860 CGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGGTCATTCTCA-GTCT
65 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCT
** * * *
11208924 AAG-ATGAGACTGGACCGAGGGTTGTGATA
129 AAGCACCAGACCGAACCGAGGGTTATGATA
* * * * * * * * *
11208953 GTAGGATCGATAGCACGTAGGAGGATCGGGCTAATCCCCGACTTGCGCATTCTGCCTCTCCGACT
1 GCAGGATCGATAACACGCAGGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGGCC
* * * *
11209018 GGCTGAGCACCCACATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCGATGTCTAA
66 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
11209083 GCA
131 GCA
11209086 TACGGAGTTC
Statistics
Matches: 234, Mismatches: 52, Indels: 9
0.79 0.18 0.03
Matches are distributed among these distances:
156 1 0.00
157 111 0.47
158 120 0.51
159 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCAGGATCGATAACACGCAGGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGGCC
GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCACCAGACCGAACCGAGGGTTATGATA
Found at i:11209014 original size:867 final size:865
Alignment explanation
Indices: 11207044--11209108 Score: 2394
Period size: 867 Copynumber: 2.4 Consensus size: 865
11207034 GCGTTACGGT
* * * **
11207044 AGCGGGACCGACAGCACGCAGAGGGGGATCGAGTCGATCCCCCTCTTACGCATTATGCCTCTCCG
1 AGCGGGACCGGCAACACGCAGA-GGGGATCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCG
11207109 GCCAGCTCAACGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
65 GCCAGCTCAACGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * *
11207174 TAAGATCG-GA-TCGAACCGAGGGTTGTGGTAGCAAGATCGACAGCACATAAGGGGGGACTGGGC
130 TAAGAT-GAGACT-GAACCGAGGGTTGTGGTAGCAGGATCGATAGCACGT-A--GGGGAC-GGGC
* * *
11207237 CGGTCCCTGACTTACGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
189 CGGTCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
* * *
11207302 TGGTTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCA
254 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAG-AGTTCATTCCCAGTCTAAGATCA
* **
11207367 GACCGGACTGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCAACAGCACATAGGGGGGACCGGG
318 GACCGGACTGAGGGTTACGGTAGCAGGACCAGCAGCAGGATCAACAGCACATAGGGGGGACCAAG
* * * * * * * **
11207432 TCAATCCCAGGCTTGCGTATTTTGCCTCTCCGATCGACCTCTCACCTGGACGCTCGTTTCGTGGG
383 CCAATCCCAGGCTTACGCATTCTGCCTCTCCGACCGACCTCTCACCTGCACGCTCGTTTCATCAG
* *
11207497 TTGGCTTAGGCAAACAGAGTTCATTCCATGTCTAAGCCTTAGCCGGACCTGGGTTGTGGCAACAG
448 TTGGCTTAGGCAAACAGAGTTCATTCCATGTCTAAGCCTCAGCCGGACCAGGGTTGT--------
11207562 GACCGGTAGCAGGATCGACAACACGCAGAGGGGGACCAGGCTGATCCCCGGCTTGCACATTATGC
505 -A--GGTAGCAGGATCGACAACACGCAGAGGGGGACCAGGCTGATCCCCGGCTTGCACATTATGC
* * * * *
11207627 CTCTTCAGCCAGGCCTCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGC
567 CTCTCCAGCCAGGCCTCTCCGACCGACTCAGCGCCCGCACACTCGTTTCGTGAGTTGACTTAGGC
* * * *
11207692 ATACGGAGTTTATCCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCAGATCGGACTG
632 AAACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCG
* * ** * * *
11207757 AGGGTTATGACAGCAGGATCGGTAGCACGTAGGGGGGACCGAACGGATCCCTGGCTTACGCATTC
697 AAGGTTACGACAGCAGGATCGACAGCACGCAGGGGGGACCGAACCGATCCCTGGCTTACACATTC
* *** * *
11207822 TGCCTCTCCAACCGGTTGAGCGCTCGTATGTCCGTTTCGTGGGTTGGCTTAGTCATAGGGAGTTC
762 TGCCTCTCCAACCGGTTGAGCGCTCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTC
** * *
11207887 ATTCCATGTCTAAGCCCCAGTGGGACTGAAGGTTGTGGC
827 ATTCCATGTCTAAGCCCCAGCCGAACTGAAGGTTATGGC
** * * * *
11207926 AGCGGGACCGGCAGTATGCAGAGCGGGACCGAGCTGATCCCCGGCTTACGCATTATGCCTCTCCA
1 AGCGGGACCGGCAACACGCAGAG-GGGATCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCG
* * *
11207991 ACCAGCTCAACGCCCGAACACTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTC
65 GCCAGCTCAACGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * * *
11208056 TAAGATTAGACCGAACCGAGGGTTTTGGCAGCAGGATTGATAGCATGCAAGGGGACCAGGCCGGT
130 TAAGATGAGACTGAACCGAGGGTTGTGGTAGCAGGATCGATAGCACG-TAGGGGA-CGGGCCGGT
* * * * * * *
11208121 CCTCGGCTTATGTATTCTGCCTCTCCGATCGACTGAGCACCCGCACACTCGTTTCGTGGGTTAGC
193 CCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGC
* * *
11208186 TGAGGCATACGGAGTTCATTCCATGTCTAAGCATATAGAGTTCATTCCCAGTCTATGATCAGATC
258 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATA-AGAGTTCATTCCCAGTCTAAGATCAGACC
*** *
11208251 GAGACTGAGGGTTACGGTAGCAGGACCAGCAGCAGGATCGGTAGCACGTAGGGGGGACCAAGCCA
322 G-GACTGAGGGTTACGGTAGCAGGACCAGCAGCAGGATCAACAGCACATAGGGGGGACCAAGCCA
* * * * *
11208316 ATCCTC-GGCTTACGCATTCTGCGTCTCTGGCCGA-CTGAGCTC-CC-GCCCGTTCGTTTCATCA
386 ATCC-CAGGCTTACGCATTCTGCCTCTCCGACCGACCT---CTCACCTGCACGCTCGTTTCATCA
* ** * * *
11208377 GTTGGCTTAGGCATATGGAGTTCATTCGATGTCTAAG-CTCCAGCTGGATCGAGGGTTGT-GGTA
447 GTTGGCTTAGGCAAACAGAGTTCATTCCATGTCTAAGCCT-CAGCCGGA-CCAGGGTTGTAGGTA
* * * * * *
11208440 GCAGGATTGACAGCATGTAGAGGGGGACCAGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGG
510 GCAGGATCGACAACACGCAGAGGGGGACCAGGCTGATCCCCGGCTTGCACATTATGCCTCTCCAG
* * * * * *
11208505 TC-GGCCTCTCCGACCGGCTCAGCGCCCGCATACTTGTTTCGTGGGTTGACTTAGGCAAATGGAG
575 CCAGGCCTCTCCGACCGACTCAGCGCCCGCACACTCGTTTCGTGAGTTGACTTAGGCAAACGGAG
* * *
11208569 TTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGC
640 TTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAAGGTTAC
* * * *
11208634 GGCCGCAGGATCGACAGCACGCA-GGGGGACC-AGGCCGATTCCC-GGCTTGCACATTCTGCCTC
705 GACAGCAGGATCGACAGCACGCAGGGGGGACCGA-ACCGA-TCCCTGGCTTACACATTCTGCCTC
* *** *
11208696 TTCGGTCGGTTGAGTGC-CTGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCC
768 TCCAACCGGTTGAGCGCTC-GCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCC
* *
11208760 ATGTCTAAGCCCCAGCCGAACTGAGGGTTATGGT
832 ATGTCTAAGCCCCAGCCGAACTGAAGGTTATGGC
* * * * * *
11208794 AGCGGGATCGGTAACACGCAGAGGGGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGG
1 AGCGGGACCGGCAACACGCAGAGGGGATCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGG
* * * * * *
11208859 CCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGGTCATTCTCAGTCT
66 CCAGCTCAACGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * ***
11208924 AAGATGAGACTGGACCGAGGGTTGTGATAGTAGGATCGATAGCACGTAGGAGGATCGGGCTAATC
131 AAGATGAGACTGAACCGAGGGTTGTGGTAGCAGGATCGATAGCACGTAGG-GGA-CGGGCCGGTC
* * *
11208989 CCCGACTTGCGCATTCTGCCTCTCCGA-CTGGCTGAGCACCCACATGCTCGTTTCGTGGGTTGGC
194 CCCGACTTACGCATTCTGCCTCTCCGATC-GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGC
* *
11209053 TTAGGCATACGGAGTTCATTCGATGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
258 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATA-AGAGTTCATTCCCAGTCTAA
11209109 AATTTTGAGC
Statistics
Matches: 994, Mismatches: 171, Indels: 51
0.82 0.14 0.04
Matches are distributed among these distances:
866 4 0.00
867 242 0.24
868 125 0.13
869 131 0.13
870 63 0.06
880 129 0.13
881 133 0.13
882 164 0.16
883 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (865 bp):
AGCGGGACCGGCAACACGCAGAGGGGATCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGG
CCAGCTCAACGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATGAGACTGAACCGAGGGTTGTGGTAGCAGGATCGATAGCACGTAGGGGACGGGCCGGTCCC
CGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTA
GGCATACGGAGTTCATTCCATGTCTAAGCATAAGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
TGAGGGTTACGGTAGCAGGACCAGCAGCAGGATCAACAGCACATAGGGGGGACCAAGCCAATCCC
AGGCTTACGCATTCTGCCTCTCCGACCGACCTCTCACCTGCACGCTCGTTTCATCAGTTGGCTTA
GGCAAACAGAGTTCATTCCATGTCTAAGCCTCAGCCGGACCAGGGTTGTAGGTAGCAGGATCGAC
AACACGCAGAGGGGGACCAGGCTGATCCCCGGCTTGCACATTATGCCTCTCCAGCCAGGCCTCTC
CGACCGACTCAGCGCCCGCACACTCGTTTCGTGAGTTGACTTAGGCAAACGGAGTTCATCCCCAG
TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAAGGTTACGACAGCAGGAT
CGACAGCACGCAGGGGGGACCGAACCGATCCCTGGCTTACACATTCTGCCTCTCCAACCGGTTGA
GCGCTCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
GCCGAACTGAAGGTTATGGC
Found at i:11209106 original size:26 final size:26
Alignment explanation
Indices: 11209057--11209108 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11209047 GTTGGCTTAG
*
11209057 GCATACGGAGTTCATTCGATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
11209083 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
11209109 AATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:11216018 original size:159 final size:159
Alignment explanation
Indices: 11215838--11216201 Score: 416
Period size: 159 Copynumber: 2.3 Consensus size: 159
11215828 CGCATGCCCA
* * *
11215838 TTTCGTGGGTTGGCTTAGGCATAGC-GAGTTCATTCCATGTCTAAGCCCCA-ACCGGA-TAGAGG
1 TTTCGTGGGTTGGCTTAGGCATA-CAGAGTTCATTCCATGTCTAAG-ACAAGACCGGACCA-AGG
* * * * * *
11215900 GTTGTGGCAGCGGGACCGACAGCACGTAGAGG-GAGATC-GAGCTGATCCCTGGCTTGCGCATTA
63 GTTGCGACAGCAGGACCGACAGCACGTAG-GGAGAGATCAGA-CCGATCCCCGACTTGCGCATTA
*
11215963 TGCCTCTCCGGTCGACTCACCACCCGTACGCTCG
126 TGCCTCTCCGGTCAACTCACCACCCGTACGCTCG
* *
11215997 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC-TAGTCTAAGATAAGACCGGACCAAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCAT-GTCTAAGACAAGACCGGACCAAGGGT
** * * * *
11216061 TGCGACAGCAGGATTGATAGCACGTAGGGAGGGATCAGACCGATCCCCGACTTGTGCATTCTGCC
65 TGCGACAGCAGGACCGACAGCACGTAGGGAGAGATCAGACCGATCCCCGACTTGCGCATTATGCC
* * * *
11216126 TCTCTGGTCAACTGATCGCCCGTACGCTCG
130 TCTCCGGTCAACTCACCACCCGTACGCTCG
* *
11216156 TTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGA
1 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGA
11216202 ATAGGAGTTC
Statistics
Matches: 173, Mismatches: 25, Indels: 14
0.82 0.12 0.07
Matches are distributed among these distances:
158 5 0.03
159 164 0.95
160 4 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGACAAGACCGGACCAAGGGTT
GCGACAGCAGGACCGACAGCACGTAGGGAGAGATCAGACCGATCCCCGACTTGCGCATTATGCCT
CTCCGGTCAACTCACCACCCGTACGCTCG
Found at i:11216568 original size:26 final size:26
Alignment explanation
Indices: 11216539--11216591 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11216529 GTTGACTTAG
*
11216539 GCATATGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
11216565 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
11216591 G
1 G
11216592 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:11217434 original size:26 final size:26
Alignment explanation
Indices: 11217398--11217450 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11217388 GTTGGCTTAG
11217398 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
11217424 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11217450 G
1 G
11217451 ATTGGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11217636 original size:26 final size:26
Alignment explanation
Indices: 11217607--11217659 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11217597 GTTGACTTAG
* *
11217607 GCATACGGAGTTGATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
**
11217633 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11217659 G
1 G
11217660 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11217982 original size:159 final size:158
Alignment explanation
Indices: 11217812--11218749 Score: 707
Period size: 159 Copynumber: 6.0 Consensus size: 158
11217802 AAACCCCAGT
** * *
11217812 CGGACTGAGGGTTGTGGCAGTGGGACCGGCAGCACGCAGAGGGGGACTGAGCCGATCCTCGGCTT
1 CGGACTGAGGGTTGTGGCAGCAGGACCGACAGCACGCAG-GGGGGACTGAGCCGATCCCCGGCTT
* *
11217877 GCGCATTATGCCTCTCC-AGCTGACTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
65 GCGCATTATGCCTCTCCGA-CCGACTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * *
11217941 ACGAAGTTCATTCCCAATCTAAGATAGAAC
129 ACGGAGTTCATTCCCAGTCTAAGATACAAC
** * * * * *
11217971 CGGACTGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGGAC-CAGGCCAATCCTCGACTT
1 CGGACTGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGGGACTGA-GCCGATCCCCGGCTT
* * * * * * * *
11218035 GCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATA
65 GCGCATTATGCCTCTCCGACCGACTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* *** *
11218100 GGGAGTTCATT-CCATGTCTAAGCCCCAGC
130 CGGAGTTCATTCCCA-GTCTAAGATACAAC
* * *
11218129 CGGACAGAGGGTTGTGGCAGC-GGAACCGGCAG-AC-C------G---G-GCCGATCCCCAGCTT
1 CGGACTGAGGGTTGTGGCAGCAGG-ACCGACAGCACGCAGGGGGGACTGAGCCGATCCCCGGCTT
* * * * *
11218181 GCGCATTATGCCTTTCC-AGTCGACTCACCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCAT
65 GCGCATTATGCCTCTCCGA-CCGACTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* *
11218245 ACAGAGTTCATTCCTAGTCTAAGATA-AGAC
129 ACGGAGTTCATTCCCAGTCTAAGATACA-AC
** * * ** * *
11218275 CGGACCAAGGGTTGCGACAGCAGGATTGACAGCACGCAGGGAGGGA-TCAGGCCGATCCCCTGCT
1 CGGACTGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGGG-GGGACTGA-GCCGATCCCCGGCT
* ** * *
11218339 TGTGCATTATGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
64 TGCGCATTATGCCTCTCCGACCGACTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
*** **
11218404 ACGGAGTTCATT-CCATGTCTAAGCCCCATT
129 ACGGAGTTCATTCCCA-GTCTAAGATACAAC
* * * * * * * * * **
11218434 CAGA-TCGAGGATTGTGGCAGCGGGACCGGCAGCACGTAGAGGAGGACCGATCTGATCCTTGGCT
1 CGGACT-GAGGGTTGTGGCAGCAGGACCGACAGCACGCAG-GGGGGACTGAGCCGATCCCCGGCT
* * * * *
11218498 TGCGCATTATGCCTCTTCGACCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGTAT
64 TGCGCATTATGCCTCTCCGACCGACTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * *
11218563 ACGGAGTTCATTCCTATTATAAGAT-CAGAC
129 ACGGAGTTCATTCCCAGTCTAAGATACA-AC
* * * * * * *** * *
11218593 CAGACCGAGGGTTGTGGCAGTAGGATCGATAACACATTGGGGGAGACTGGGCTGATCCCCGGCTT
1 CGGACTGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGG-GACTGAGCCGATCCCCGGCTT
* * * * * * * * *
11218658 GTGCATTTTGCCTTTTCGACCGGCTGAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATA
65 GCGCATTATGCCTCTCCGACCGACTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
11218723 CGGAGTTCATT-CCATGTCTAAGCATAC
130 CGGAGTTCATTCCCA-GTCTAAG-ATAC
11218750 GGAGTTAATT
Statistics
Matches: 599, Mismatches: 146, Indels: 66
0.74 0.18 0.08
Matches are distributed among these distances:
145 2 0.00
146 100 0.17
147 6 0.01
148 1 0.00
150 1 0.00
155 1 0.00
156 1 0.00
157 8 0.01
158 123 0.21
159 347 0.58
160 8 0.01
161 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
CGGACTGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGGGACTGAGCCGATCCCCGGCTTG
CGCATTATGCCTCTCCGACCGACTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATACAAC
Found at i:11218768 original size:26 final size:26
Alignment explanation
Indices: 11218718--11218770 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11218708 GTTGGCTTAG
* *
11218718 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTAATTCCATATCTAA
11218744 GCATACGGAGTTAATTCCCA-ATCTAA
1 GCATACGGAGTTAATT-CCATATCTAA
11218770 G
1 G
11218771 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCATATCTAA
Found at i:11219976 original size:26 final size:26
Alignment explanation
Indices: 11219940--11219992 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11219930 GTTAGCTTAG
11219940 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11219966 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11219992 G
1 G
11219993 ATTGAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11220350 original size:26 final size:26
Alignment explanation
Indices: 11220320--11220372 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11220310 GTTGACTTAG
11220320 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
11220346 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11220372 G
1 G
11220373 ATGAAATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11221423 original size:26 final size:26
Alignment explanation
Indices: 11221387--11221439 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11221377 GTTGACTTAG
*
11221387 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
11221413 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11221439 G
1 G
11221440 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11222300 original size:26 final size:26
Alignment explanation
Indices: 11222264--11222316 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11222254 GTTGACTTAG
11222264 GCATACAGAGTTCATCTCC-AGTCTAA
1 GCATACAGAGTTCAT-TCCTAGTCTAA
11222290 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
11222316 G
1 G
11222317 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:11222643 original size:26 final size:26
Alignment explanation
Indices: 11222607--11222659 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11222597 GTTGGCTTAG
*
11222607 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
11222633 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11222659 G
1 G
11222660 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11223624 original size:158 final size:159
Alignment explanation
Indices: 11223295--11223659 Score: 443
Period size: 158 Copynumber: 2.3 Consensus size: 159
11223285 GCCTCTCAGG
* * *
11223295 TCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGG
1 TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCTAGCCGGACCGAAG
* * * * * *
11223360 GTTGTGGCAGCGAGACCGGCAGCACATAGAGAGGGACCGGGCCAATCCTCGGCTTACGCATTATG
66 GTTATGACAGAGAGACCGACAGCACATAGAGAGGGACCGGGCCAATCCTCAGCTTACACATTATG
* *
11223425 CCTCTTCGGCCGACTCAACGCCCGCACGC
131 CCTCTCCGACCGACTCAACGCCCGCACGC
* * ** *
11223454 TCATTTCGTGGGTTGACTTATGCATATTGAGTTCATTCCCA-GTCTAAGATC-AGACCGGACCGA
1 TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCTAG-CCGGACCGA
* * *
11223517 AGGTTATGACAGTAG-GATCGACAGCACGTAG-GAGGGATCGGGCCAATCCGT-AGCTTACACAT
64 AGGTTATGACAG-AGAGACCGACAGCACATAGAGAGGGACCGGGCCAATCC-TCAGCTTACACAT
* * * *
11223579 TCTGCCTCTCCGACCGGCTGAGCGCCCGCACGC
127 TATGCCTCTCCGACCGACTCAACGCCCGCACGC
*
11223612 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
11223660 CATACAGAGT
Statistics
Matches: 174, Mismatches: 27, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
157 3 0.02
158 94 0.54
159 73 0.42
160 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (159 bp):
TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCTAGCCGGACCGAAG
GTTATGACAGAGAGACCGACAGCACATAGAGAGGGACCGGGCCAATCCTCAGCTTACACATTATG
CCTCTCCGACCGACTCAACGCCCGCACGC
Found at i:11223669 original size:26 final size:26
Alignment explanation
Indices: 11223633--11223685 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11223623 GTTGGCTTAG
*
11223633 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
11223659 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11223685 G
1 G
11223686 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11229988 original size:26 final size:26
Alignment explanation
Indices: 11229958--11230010 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11229948 GTTGACTTAG
11229958 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
11229984 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
11230010 G
1 G
11230011 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:11230481 original size:158 final size:157
Alignment explanation
Indices: 11229984--11230482 Score: 506
Period size: 158 Copynumber: 3.2 Consensus size: 157
11229974 CCCAGTCTAA
* * * *
11229984 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGACAGCAGGATGGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGACCGAGGGTTGTGGCAGCAGGATCGGCA
* * * *
11230049 GCACGCAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTTTCCGACC-GACTGAGCGC
65 GCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCAG-CTGAGCGC
* *
11230113 CCGTACGCCCGTTTCGTGGGTTGGCTTAG
129 CCGAACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * *
11230142 GCATAGGGAGTTCA-T-CCATGTCTAAGCCCCAG-CCGACCGAGGGTTGTGGCAGCGGGACCGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACGGACCGAGGGTTGTGGCAGCAGGATCGGC
** * * * ** * *
11230204 AGCACGCATAGGGGACTGAGCCGATCCCCGACTTGCGTATTATGCCTCTCCGGTTAGCTCAACGC
64 AGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGC
* * *
11230269 TCGAACGCTCGTTTTGTGGGTTGACTTAG
129 CCGAACGCTCGTTTCGTGGGTTGGCTTAG
* * * * **
11230298 GCATACGAAGTTCATTCCCAATCTAAGATCAGATCGGACTGAGGGTTGTGGCAGCAGGATTGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTTGTGGCAGCAGGATCGGCA
** * * * *
11230363 GCACGCAGGGGGGACC-AGGTTGATCCCCGACTTGCACATTCTGCCTCTACGGCCAGTTGAGCAC
65 GCACGCAGGGGGGACCGA-GCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGC
* * *
11230427 CCGCACGCTCATGTCGTGGGTTGGCTTAG
129 CCGAACGCTCGTTTCGTGGGTTGGCTTAG
11230456 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
11230483 CATACAGAGT
Statistics
Matches: 270, Mismatches: 62, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
156 116 0.43
157 21 0.08
158 133 0.49
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGACCGAGGGTTGTGGCAGCAGGATCGGCAG
CACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCC
GAACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:11231838 original size:159 final size:159
Alignment explanation
Indices: 11231537--11232040 Score: 493
Period size: 158 Copynumber: 3.2 Consensus size: 159
11231527 CCCAGTCTAA
* * * * * * * * *
11231537 GCATACAGAGTTCATTCCCA-ATCTAAG-ATCGGATCAGACCGAGGGTTGCGGCAGCAAGATCAG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGG
* ** * * *
11231600 CAGCACGCAGGGGGGATTGGGCCAATCCCCGGCTTGTGCATTCTACCTCTCCGACC-GACTAAGC
65 CAGCACGCAGGGGGGACTGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCAG-CTAAGC
* * *
11231664 GCCCACATGCCCATTTCATGGGTTGGCTTAG
129 GCCCGCACGCTCATTTCATGGGTTGGCTTAG
* * * *
11231695 GCATAGGGAGTTCATTCCATGTGTAAGCCCCAG-CCAGACCGAGGGTTGTGGTAGCGGGATCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGGC
* * *
11231759 AGCACGCAGAGGGGGACCGGGCTGATCCCCGGTTTGCGCATTATGCCTCTCCGACCAGCTCAGCG
66 AGCACGCAG-GGGGGACTGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTAAGCG
* *
11231824 CCCGCACGCTCATTTCATGGGTTGACTTAA
130 CCCGCACGCTCATTTCATGGGTTGGCTTAG
* ** * * * *
11231854 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATTAGACCGAGGGTTGTAGTAGCAGGTTTGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGG
* * ** * * * *
11231917 CAGCACGTAGGGGGG-CTGAGCTGATTCTTCGGCTTACGCATTTTGCCTCTCCGGCCAGCTGAGC
65 CAGCACGCAGGGGGGACTGGGCTGA-TCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTAAGC
* * *
11231981 GCCCGCACGTTCGTTTCGTGGGTTGGCTTAAG
129 GCCCGCACGCTCATTTCATGGGTTGGCTT-AG
11232013 G-ATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
11232041 TAAGGAGTTC
Statistics
Matches: 283, Mismatches: 53, Indels: 19
0.80 0.15 0.05
Matches are distributed among these distances:
157 13 0.05
158 139 0.49
159 127 0.45
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGGC
AGCACGCAGGGGGGACTGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTAAGCGC
CCGCACGCTCATTTCATGGGTTGGCTTAG
Found at i:11232047 original size:26 final size:26
Alignment explanation
Indices: 11232009--11232064 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
11231999 TGGGTTGGCT
* *
11232009 TAAGGATACGGAGTTCATTCC-ATGTC
1 TAAGCATAAGGAGTTCATTCCTA-GTC
11232035 TAAGCATAAGGAGTTCATTCCTAGTC
1 TAAGCATAAGGAGTTCATTCCTAGTC
11232061 TAAG
1 TAAG
11232065 ATCGGACCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (26 bp):
TAAGCATAAGGAGTTCATTCCTAGTC
Found at i:11232445 original size:26 final size:26
Alignment explanation
Indices: 11232393--11232445 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11232383 GTTGGCTTAG
*
11232393 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTATAA
11232419 GCATACGGAGTTCATTCCCA-GTATAA
1 GCATACGGAGTTCATT-CCATGTATAA
11232445 G
1 G
11232446 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTATAA
Found at i:11232799 original size:26 final size:26
Alignment explanation
Indices: 11232747--11232799 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
11232737 GTTGGCTTAG
* *
11232747 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGCTCATTCCATGTATAA
*
11232773 GCATACGGAGCTCATTCCCA-GTATAA
1 GCATACAGAGCTCATT-CCATGTATAA
11232799 G
1 G
11232800 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCATGTATAA
Found at i:11232990 original size:354 final size:354
Alignment explanation
Indices: 11232215--11233690 Score: 969
Period size: 354 Copynumber: 4.2 Consensus size: 354
11232205 CCACATGCCT
* * * *
11232215 GTTTTGTGGGTTGTCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACTGAGGGT
1 GTTTTGTGGGTTG-CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGT
* * ** * * * *
11232280 TGTGGCAGTGGGACCGGCTGCACATAGAGGGGGATCGGGCCAATCCCCGGCTTGCACATTTTGCC
65 TGCGACAGTAAGACCGACAGCACATAGAGGGGGATCGGACCAATCCCCGGCTTGCACATTCTGCC
* * * *
11232345 TCTCTGGTCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC
130 TCTCCGGTCGGCTCAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTC
* * *
11232410 CATGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATCGGACCGAACCGAGGGTTGCAACAGCA
195 CATGTCTAAGCATACGGAGCTCATTCCCAGTATAAGATCAGACCGAACCAAGGGTTGCAACAGCA
11232475 AGACCAACAGCAGGATCGACAACACGCAGAAGGGATCGGGCCGATTCCCGGCTTGCGCATTCTGC
260 AGACCAACAGCAGGATCGACAACACGCAGAAGGGATCGGGCCGATTCCCGGCTTGCGCATTCTGC
** *
11232540 CTCTCCGGTTGGTTGAACGCCCGCACGTTC
325 CTCTCCGGCCGGTTGAACGCCCGCACGCTC
** * *
11232570 GTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGATCGGACCGAGG
1 GTTTTGTGGGTT-GCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAGCT-GGACCGAGG
* * * * * * **
11232633 GTTGCGACAGTAAGATCGACAGCACA-CGAGGGTGATCGGATCGATCCCTGGCTTGTGCATTCTG
63 GTTGCGACAGTAAGACCGACAGCACATAGAGGGGGATCGGACCAATCCCCGGCTTGCACATTCTG
* *
11232697 CCTCTCCGGTCGGCTTAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCAT
128 CCTCTCCGGTCGGCTCAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCAT
11232762 TCCATGTCTAAGCATACGGAGCTCATTCCCAGTATAAGATCAGACCGAACCAAGGGTTGCAACAG
193 TCCATGTCTAAGCATACGGAGCTCATTCCCAGTATAAGATCAGACCGAACCAAGGGTTGCAACAG
* * * ** ** *
11232827 CAGGACCAACAGCAGGATC-AGTAGCACGCAGGGGGGATCGGGTTGA-TCCCTAGG-TTGCGTAT
258 CAAGACCAACAGCAGGATCGA-CAACACGCAGAAGGGATCGGGCCGATTCCC--GGCTTGCGCAT
* * * * *
11232889 TCTGCCTCTCTGGCCGGTTGAGCGTCTGCATGCTC
320 TCTGCCTCTCCGGCCGGTTGAACGCCCGCACGCTC
* * * * *
11232924 GTTTTATGGGTTAGCTTAGCCATACAGAGTTCATTCTATGTCTAAGCCCCAGCTGGACCAAGGGT
1 GTTTTGTGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGG-
* * *** * * * * *
11232989 TGTGGCAACAGGATCGGTAGTGGGATCAGCAGTATACAGAGGGGGACCGGGCTAATCCCCAGCTT
64 T-T-GCGACA-G-T---AAGACCGA-CAGCA-CAT--AGAGGGGGATCGGACCAATCCCCGGCTT
* * ** * * * ** * * *
11233054 GCGCATTATAACTCTCTGGTCGGCTGAGCGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATA
118 GCACATTCTGCCTCTCCGGTCGGCTCAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATA
* * * * * * * *
11233119 C-GAAGTTCA-TCCCTAGTCTAAGAATACGAAGTTCATTCCTAGTCTAAGATCGGACC-AGATCA
183 CAG-AGTTCATTCCAT-GTCTAAGCATACGGAGCTCATTCCCAGTATAAGATCAGACCGA-ACCA
* * * * *
11233181 AGGGTT------GC--G----ATAGCAGGATCGACAGCACGCAG-GGTGGA-CTGGGTCGATCCC
245 AGGGTTGCAACAGCAAGACCAACAGCAGGATCGACAACACGCAGAAG-GGATC-GGGCCGATTCC
* ** ** * * *
11233232 CGGCTTACGCATTCTGCCTCTCTAGCCGACTGAGCGCCCGTACGCCC
308 CGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAACGCCCGCACGCTC
* * * ** *
11233279 GTTTGGTGGGTTGGCTTAGGCATAGGGAGTTCATTCGATGTCTAAGCCCCAGCCAGACCAAGGGT
1 GTTTTGTGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGT
* ** *** * * * * * * * * ** *
11233344 TGTGGTAGCGGGACCTG-CAGTACGTAGAGGGGGGACCGGGCTAATCCCTGACTTACGTATTATG
65 TGCGACAGTAAGACC-GACAGCACATAGA-GGGGGATCGGACCAATCCCCGGCTTGCACATTCTG
* * ** * * * * ** *
11233408 CCTCTTCGGTCGGCTTCA-TGCCCGTGCGCTCATTTCGTGGTTTGACTTTTGCATACGGAGTTCA
128 CCTCTCCGGTCGGC-TCAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCA
* * * * *
11233472 TTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC-GAATCGTACCAAGGGTT-----
192 TTCCATGTCTAAGCATACGGAGCTCATTCCCAGTATAAGATCAG-ACCGAACCAAGGGTTGCAAC
* * * ** * * *
11233531 -G-AAG-----CAGCAGGATCGGCAGCACGTAGGGGGGGACCTGGCCGA-TCCCTGGATTGCGCA
256 AGCAAGACCAACAGCAGGATCGACAACACGCA-GAAGGGATCGGGCCGATTCCC-GGCTTGCGCA
* * * * *
11233588 TTCTGCCTCTCCAGCCAGCTGAGCGCCCGCACGCCC
319 TTCTGCCTCTCCGGCCGGTTGAACGCCCGCACGCTC
** ** * * * *
11233624 GTTTCATGGGTTGGCTTAGGCATGGGGAGTTCATTCCATGTCTAAACCCCAACCGGACCAAGGGT
1 GTTTTGTGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGT
11233689 TG
65 TG
11233691 TGGTAACGGG
Statistics
Matches: 906, Mismatches: 173, Indels: 94
0.77 0.15 0.08
Matches are distributed among these distances:
343 4 0.00
344 142 0.16
345 118 0.13
346 7 0.01
347 1 0.00
348 1 0.00
351 1 0.00
352 2 0.00
353 8 0.01
354 276 0.30
355 187 0.21
356 9 0.01
357 5 0.01
358 1 0.00
359 2 0.00
361 2 0.00
362 4 0.00
363 5 0.01
364 1 0.00
366 6 0.01
367 124 0.14
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (354 bp):
GTTTTGTGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTT
GCGACAGTAAGACCGACAGCACATAGAGGGGGATCGGACCAATCCCCGGCTTGCACATTCTGCCT
CTCCGGTCGGCTCAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCC
ATGTCTAAGCATACGGAGCTCATTCCCAGTATAAGATCAGACCGAACCAAGGGTTGCAACAGCAA
GACCAACAGCAGGATCGACAACACGCAGAAGGGATCGGGCCGATTCCCGGCTTGCGCATTCTGCC
TCTCCGGCCGGTTGAACGCCCGCACGCTC
Found at i:11233152 original size:26 final size:26
Alignment explanation
Indices: 11233116--11233167 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
11233106 TGACTTAGGC
11233116 ATACGAAGTTCATCCCTAGTCTAAGA
1 ATACGAAGTTCATCCCTAGTCTAAGA
*
11233142 ATACGAAGTTCATTCCTAGTCTAAGA
1 ATACGAAGTTCATCCCTAGTCTAAGA
11233168 TCGGACCAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATCCCTAGTCTAAGA
Found at i:11233494 original size:26 final size:26
Alignment explanation
Indices: 11233458--11233510 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11233448 TTTGACTTTT
11233458 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
11233484 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11233510 G
1 G
11233511 ATCGAATCGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11233509 original size:344 final size:345
Alignment explanation
Indices: 11233091--11233816 Score: 851
Period size: 344 Copynumber: 2.1 Consensus size: 345
11233081 GCGCCCGTAT
* *
11233091 GCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCTAGTCTAAGAATACGAAGTTCATT
1 GCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCATAGTCTAAGAATACGAAGTTCATT
* * * * * *
11233156 CCTAGTCTAAGATCGGACCAG-ATCAAGGGTTG-CGATAGCAGGATCGACAGCACGCA-GGGTGG
66 CCCAGTCTAAGATCGAACC-GTACCAAGGGTTGAAG-CAGCAGGATCGACAGCACGCAGGGGGGG
* * * *
11233218 A-CTGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCTAGCC-GACTGAGCGCCCGTACGCCCGT
129 ACCT-GGCCGATCCCCGGATTACGCATTCTGCCTCTCCAGCCAG-CTGAGCGCCCGCACGCCCGT
** * * *
11233281 TTGGTGGGTTGGCTTAGGCATAGGGAGTTCATTCGATGTCTAAGCCCCAGCCAGACCAAGGGTTG
192 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAACCAGACCAAGGGTTG
* * * *
11233346 TGGTAGCGGGACCTGCAGTACGTAGAGGGGGGACCGGGCTAATCCCTGACTTACGTATTATGCCT
257 TGGTAACGGGACCAGCAGCACGCAGAGGGGGGACCGGGCTAATCCCTGACTTACGTATTATGCCT
11233411 CTTCGGTCGGCTTCATGCCCGTGC
322 CTTCGGTCGGCTTCATGCCCGTGC
* ** * * * *
11233435 GCTCATTTCGTGGTTTGACTTTTGCATACGGAGTTCATTCCAT-GTCTAAGCATATGGAGTTCAT
1 GCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCA-TCCATAGTCTAAGAATACGAAGTTCAT
* * *
11233499 TCCCAGTCTAAGATCGAATCGTACCAAGGGTTGAAGCAGCAGGATCGGCAGCACGTAGGGGGGGA
65 TCCCAGTCTAAGATCGAACCGTACCAAGGGTTGAAGCAGCAGGATCGACAGCACGCAGGGGGGGA
* *
11233564 CCTGGCCGATCCCTGGATTGCGCATTCTGCCTCTCCAGCCAGCTGAGCGCCCGCACGCCCGTTTC
130 CCTGGCCGATCCCCGGATTACGCATTCTGCCTCTCCAGCCAGCTGAGCGCCCGCACGCCCGTTTC
* *
11233629 ATGGGTTGGCTTAGGCATGGGGAGTTCATTCCATGTCTAAACCCCAACCGGACCAAGGGTTGTGG
195 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAACCAGACCAAGGGTTGTGG
* * * * * * ** * *
11233694 TAACGGGACCAGTAGCACGCAGA-GGGGGACTGAG-TCGATCCCCGGCTTGTGCATGATGCCTCT
260 TAACGGGACCAGCAGCACGCAGAGGGGGGACCGGGCT-AATCCCTGACTTACGTATTATGCCTCT
* * **
11233757 CCGGTCGACTCGTCA--CCCGAAC
324 TCGGTCGGCT--TCATGCCCGTGC
* *
11233779 GCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCAT
1 GCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
11233817 TCCCAATCTA
Statistics
Matches: 320, Mismatches: 53, Indels: 19
0.82 0.14 0.05
Matches are distributed among these distances:
343 3 0.01
344 170 0.53
345 141 0.44
346 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (345 bp):
GCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCATAGTCTAAGAATACGAAGTTCATT
CCCAGTCTAAGATCGAACCGTACCAAGGGTTGAAGCAGCAGGATCGACAGCACGCAGGGGGGGAC
CTGGCCGATCCCCGGATTACGCATTCTGCCTCTCCAGCCAGCTGAGCGCCCGCACGCCCGTTTCA
TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAACCAGACCAAGGGTTGTGGT
AACGGGACCAGCAGCACGCAGAGGGGGGACCGGGCTAATCCCTGACTTACGTATTATGCCTCTTC
GGTCGGCTTCATGCCCGTGC
Found at i:11233995 original size:26 final size:26
Alignment explanation
Indices: 11233959--11234011 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11233949 GTTGGCTTAG
11233959 GCATACGGAGTTCACT-CCATGTCTAA
1 GCATACGGAGTTCACTCCCA-GTCTAA
*
11233985 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
11234011 G
1 G
11234012 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:11234694 original size:159 final size:159
Alignment explanation
Indices: 11234194--11234694 Score: 448
Period size: 158 Copynumber: 3.2 Consensus size: 159
11234184 CCTAGTCTAA
* * * * *
11234194 GCATACAGAGTTCATTCCCA-GTCAAAGATC-GAACCGGACCGAGGGTTGCGGCAGGAGGATCGG
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAG-ACCGAACCGAGGGTTGCGGTAGCAGGATCGA
* * * * * * *
11234257 CAGCATGCAGGGGGGATCGGGTC-GATCCCTAGCTTGCGCATTCTGCCTCTCC-GACTGACTGAG
64 CAGCATGCAAGGGGGATCAGGCCAG-TCCCTGGCTTGTGCATTATGCCTCTCCTGACTGGCTGAG
* *
11234320 TGCCCGCACGCCCATTTCATGGGTTGGCTTAG
128 CGCCCGCACGCTCATTTCATGGGTTGGCTTAG
** * ** * * *
11234352 GCATAGGGAGTTCATTCCATGCCTAAGCGCCAG-CC-AGATCGAGGGTTGGGGTAGC-GGCACCG
1 GCATACAGAGTTCATTCCATGTCTAAG-ATCAGACCGA-ACCGAGGGTTGCGGTAGCAGG-ATCG
* * * * *
11234414 ACAGCACGCAGAGGGGGATCAGGCGA-TCCCCGGCTTGTGCATTATGCCTCT-CTGGCTGGCTCA
63 ACAGCATGCA-AGGGGGATCAGGCCAGTCCCTGGCTTGTGCATTATGCCTCTCCTGACTGGCTGA
* * * * *
11234477 GCGCCCGTACGCTCGTTTCGTGGGATGACTTAG
127 GCGCCCGCACGCTCATTTCATGGGTTGGCTTAG
* * * * *
11234510 GCATGCGGAGTTCATTCC-TAATCTAAGATCAGACCGAACCGAGGGTTACGGTAGCAGGATCGAT
1 GCATACAGAGTTCATTCCAT-GTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCAGGATCGAC
* * * *
11234574 AGCATGCAAGGGGGAACCAGGCCAGTTCCTGGCTTGTGCATTTTGCCTCTCCTGTC-GGCTGAGC
65 AGCATGCAAGGGGG-ATCAGGCCAGTCCCTGGCTTGTGCATTATGCCTCTCCTGACTGGCTGAGC
* * *
11234638 GCCCGCATGCTCTTTTCATGCGTTGGCTTAG
129 GCCCGCACGCTCATTTCATGGGTTGGCTTAG
11234669 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
11234695 TCATATGGAG
Statistics
Matches: 266, Mismatches: 61, Indels: 31
0.74 0.17 0.09
Matches are distributed among these distances:
157 16 0.06
158 156 0.59
159 88 0.33
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCAGGATCGACA
GCATGCAAGGGGGATCAGGCCAGTCCCTGGCTTGTGCATTATGCCTCTCCTGACTGGCTGAGCGC
CCGCACGCTCATTTCATGGGTTGGCTTAG
Found at i:11234769 original size:710 final size:710
Alignment explanation
Indices: 11233465--11234743 Score: 1730
Period size: 710 Copynumber: 1.8 Consensus size: 710
11233455 TTTGCATACG
* ** * * *
11233465 GAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAATCGTACCAAGGGT
1 GAGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCAAAGATCGAACCGGACCAAGGGT
* * *
11233530 TGAAGCAGCAGGATCGGCAGCACGTAGGGGGGGACCTGGCCGATCCCTGGATTGCGCATTCTGCC
66 TGAAGCAGCAGGATCGGCAGCACGCAGGGGGGGACCGGGCCGATCCCTAGATTGCGCATTCTGCC
* * *
11233595 TCTCCAGCCAGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATGGGGAGTTCATTC
131 TCTCCAGACAGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTC
* * * * *
11233660 CATGTCTAAACCCCAACCGGACCAAGGGTTGTGGTAACGGGACCAGTAGCACGCAGAGGGGGACT
196 CATGCCTAAACCCCAACCAGACCAAGGGTTGGGGTAACGGCACCAGCAGCACGCAGAGGGGGACT
* * *
11233725 GAGTCGATCCCCGGCTTGTGCATGATGCCTCTCCGGTCGACTCGTCACCCGAACGCTCATTTTGT
261 CAGGCGATCCCCGGCTTGTGCATGATGCCTCTCCGGTCGACTCGTCACCCGAACGCTCATTTCGT
* * * * *
11233790 GGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGACCGGACTGGACCGAGGGTTGCAGCA
326 GGGATGACTTAGGCATACGGAGTTCATTCCCAATCTAAGACCAGACCGAACCGAGGGTTACAGCA
* * * * *
11233855 GTAGGATTGATAGCACGTAGGGGGACGAGGCCGGTCCCCGGCTTGTGCATTCTACCTCTCTGGCT
391 GCAGGATCGATAGCACGAAGGGGGACCAGGCCAGTCCCCGGCTTGTGCATTCTACCTCTCTGGCT
* * * *
11233920 GGTTGAGCACCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCACTCCATGTCTAA
456 GGCTGAGCACCCGCACGCTCGTTTTATGCGTTGGCTTAGGCATACAGAGTTCACTCCATGTCTAA
* *
11233985 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGTAGAACCAGCA
521 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGAACCAGCA
11234050 GCAGGATCGATAGCACGTCGGGGGGATCAAGTCGATCCTCGACTTGCGTATTTTGCCTCTTCGGC
586 GCAGGATCGATAGCACGTCGGGGGGATCAAGTCGATCCTCGACTTGCGTATTTTGCCTCTTCGGC
11234115 CAGCCTCTTCAACCGGTTGAGCGCCCGCCCACTCGTTTCATGGGTTGACTTAGGCATATA
651 CAGCCTCTTCAACCGGTTGAGCGCCCGCCCACTCGTTTCATGGGTTGACTTAGGCATATA
*
11234175 GAGTTCATCCC-TAGTCTAAGCATACAGAGTTCATTCCCAGTCAAAGATCGAACCGGACCGAGGG
1 GAGTTCATCCCAT-GTCTAAGCATACAGAGTTCATTCCCAGTCAAAGATCGAACCGGACCAAGGG
** * * * * *
11234239 TTGCGGCAGGAGGATCGGCAGCATGCA-GGGGGGATCGGGTCGATCCCTAGCTTGCGCATTCTGC
65 TTGAAGCAGCAGGATCGGCAGCACGCAGGGGGGGACCGGGCCGATCCCTAGATTGCGCATTCTGC
* *
11234303 CTCTCC-GACTGACTGAGTGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
130 CTCTCCAGACAG-CTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
* * * * * *
11234367 TCCATGCCTAAGCGCCAGCCAGATCGAGGGTTGGGGTAGCGGCACC-GACAGCACGCAGAGGGGG
194 TCCATGCCTAAACCCCAACCAGACCAAGGGTTGGGGTAACGGCACCAG-CAGCACGCAGAGGGGG
* * * * * *
11234431 A-TCAGGCGATCCCCGGCTTGTGCATTATGCCTCTCTGG-CTGGCTCAG-CGCCCGTACGCTCGT
258 ACTCAGGCGATCCCCGGCTTGTGCATGATGCCTCTCCGGTC-GACTC-GTCACCCGAACGCTCAT
* * *
11234493 TTCGTGGGATGACTTAGGCATGCGGAGTTCATTCCTAATCTAAGATCAGACCGAACCGAGGGTTA
321 TTCGTGGGATGACTTAGGCATACGGAGTTCATTCCCAATCTAAGACCAGACCGAACCGAGGGTTA
* * * * * * *
11234558 CGGTAGCAGGATCGATAGCATGCAAGGGGGAACCAGGCCAGTTCCTGGCTTGTGCATTTTGCCTC
386 CAGCAGCAGGATCGATAGCACG-AAGGGGG-ACCAGGCCAGTCCCCGGCTTGTGCATTCTACCTC
* * * *
11234623 TCCTGTC-GGCTGAGCGCCCGCATGCTC-TTTTCATGCGTTGGCTTAGGCATACAGAGTTCATTC
449 T-CTGGCTGGCTGAGCACCCGCACGCTCGTTTT-ATGCGTTGGCTTAGGCATACAGAGTTCACTC
* * * *
11234686 CATGTCTAATCATATGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTAC
512 CATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAC
11234744 AGTAGCAGGA
Statistics
Matches: 485, Mismatches: 75, Indels: 18
0.84 0.13 0.03
Matches are distributed among these distances:
707 1 0.00
708 126 0.26
709 151 0.31
710 203 0.42
711 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (710 bp):
GAGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCAAAGATCGAACCGGACCAAGGGT
TGAAGCAGCAGGATCGGCAGCACGCAGGGGGGGACCGGGCCGATCCCTAGATTGCGCATTCTGCC
TCTCCAGACAGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTC
CATGCCTAAACCCCAACCAGACCAAGGGTTGGGGTAACGGCACCAGCAGCACGCAGAGGGGGACT
CAGGCGATCCCCGGCTTGTGCATGATGCCTCTCCGGTCGACTCGTCACCCGAACGCTCATTTCGT
GGGATGACTTAGGCATACGGAGTTCATTCCCAATCTAAGACCAGACCGAACCGAGGGTTACAGCA
GCAGGATCGATAGCACGAAGGGGGACCAGGCCAGTCCCCGGCTTGTGCATTCTACCTCTCTGGCT
GGCTGAGCACCCGCACGCTCGTTTTATGCGTTGGCTTAGGCATACAGAGTTCACTCCATGTCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGAACCAGCA
GCAGGATCGATAGCACGTCGGGGGGATCAAGTCGATCCTCGACTTGCGTATTTTGCCTCTTCGGC
CAGCCTCTTCAACCGGTTGAGCGCCCGCCCACTCGTTTCATGGGTTGACTTAGGCATATA
Found at i:11234897 original size:26 final size:26
Alignment explanation
Indices: 11234866--11234918 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11234856 GTTGGCTTAG
11234866 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
11234892 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
11234918 G
1 G
11234919 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:11235637 original size:26 final size:26
Alignment explanation
Indices: 11235601--11235653 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11235591 GTTGACTTAG
*
11235601 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
11235627 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11235653 G
1 G
11235654 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11236099 original size:159 final size:157
Alignment explanation
Indices: 11235627--11236124 Score: 483
Period size: 154 Copynumber: 3.2 Consensus size: 157
11235617 CCTAGTCTAA
* *
11235627 GCATAC-AGAGTTCATTCCCA-GTCTAAGATCAGACCGGACTGAGGGTGGCGACAGCAGGATCGA
1 GCATACGA-AGTTCATT-CCATGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGA
* * * **
11235690 CAGCACGCAGG-GGGGACCGAGTCGATCCTTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
64 CAGCA--CAGGAGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGC
* *
11235754 TCCCGCACGCCCGTTTCATGGGTTGGCTTAG
127 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * * * *
11235785 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAGCGGGACCGGC
1 GCATACGAAGTTCATTCCATGTCTAAG-ATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGAC
* * * ** ** * *
11235849 AGCAC-GCAGAGG--CGCGCCGATCCCCAGCTTGCGTGTTAC-ACCCCTCCGGTCGGCTCAGCGC
65 AGCACAGGAGGGGACCGAGCCGATCCCTGGCTTGCGCATT-CTACCTCTCCGGTCGGCTGAGCGC
* *
11235910 CCGCACGCTCGTTTAATGGGTTGACTTAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
11235939 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCAAGATCGAC
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGAC
* * * *
11236003 AGCACATAGGAGGGGACCGGGCCGGTCCCTGGCTTGTGCATTCTACCTCTCCGGTCGGCTGAGAG
65 AGCAC--AGGAGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCG
** * *
11236068 CCCATACACTCGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
11236098 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGAAGTTCATTCCATGTCTAAG
11236125 CATACAGAGT
Statistics
Matches: 267, Mismatches: 59, Indels: 27
0.76 0.17 0.08
Matches are distributed among these distances:
153 3 0.01
154 109 0.41
155 5 0.02
156 4 0.01
157 8 0.03
158 53 0.20
159 85 0.32
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACA
GCACAGGAGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:11236846 original size:26 final size:26
Alignment explanation
Indices: 11236796--11236848 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
11236786 GTTGGCTGAG
*
11236796 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
11236822 GCATAC-AGAGTTCATTCCCA-ATCTAA
1 GCATACGA-AGTTCATT-CCATATCTAA
11236848 G
1 G
11236849 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:11237069 original size:699 final size:696
Alignment explanation
Indices: 11235737--11237521 Score: 2530
Period size: 699 Copynumber: 2.6 Consensus size: 696
11235727 GCATTCTGCC
* *
11235737 TCTCCGACCGGCTGAGCTCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTC
1 TCTCCGACCGGCTGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTC
* * * * * *
11235802 CATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGCG--C-
66 CATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGACCGACATCATGCAGAGGGGACCA
* *** ** * * * * **
11235864 -GCCGATCCCCAGCTTGCGTGTTACACCCCTCCGG-TCGGCTCAGCGCCCGCACGCTCGTTTAAT
131 GGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCT-GGCTCAGCACCCGAACGCTCATTTCGT
* * * *
11235927 GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTA
195 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTGCGGTA
* * * *
11235992 GCAAGATCGACAGCACATAGGAGGGGACCGGGCCGGTCCCTGGCTTGTGCATTCTACCTCTCCGG
260 GCAAGATCGATAGCACACAGGAGGGGACCGAGCCGGTCCCTGGCTTGTGCATTCTACCTCTCCGA
*
11236057 TCGGCTGAGAGCCCATACAC-TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
325 TCGGCTGAGAGCCC--GCACGTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* *
11236121 TAAGCATACAGAGTTCATTCCAATCTAAAATCGGACCAGACTGAGGGTTGCGACAACAGGACCAG
388 TAAGCATACAGAGTTCATTCCAATCTAAAATCGGACCAGACTGAGGGTTACGACAACAAGACCAG
*
11236186 CAGCAGGATCGATAGCATGCAGTGGGGGATCGAGCCGATCCCCGGCTTGCGTATTCTGCCTCTCC
453 CAGCAGGATCGATAGCATGCAGTGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC
* *
11236251 GATCGACTGAGCACCCGCAAGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
518 GATCGACTGAGCACCCACAAGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGT
11236316 CTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCAGCAGCGGGATCGACAGCCCACAG-A
583 CTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCAGCAGCGGGATCGACAGCCCACAGAA
* ** *
11236380 GGGGGGTCGAGCTAATCCTTAGCTTACGCATTATGCCTCTCCGGCCAGCA
648 GGGGGCT-GAGCTAATCCCCAGCTTACACATTATGCCTCTCCGGCCAGCA
* *
11236430 TCTCCGACCGGTTGAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTC
1 TCTCCGACCGGCTGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTC
*
11236495 CATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGTAGCGGGACCGACATCATGCAGATGGGGACC
66 CATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGACCGACATCATGCAGA-GGGGACC
* *
11236560 AGGCCGATCCCCGGCTTGCACATTATGCCTCTCAGGCTGGCTCAGCACCCGAACGCTCTTTTCGT
130 AGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCTGGCTCAGCACCCGAACGCTCATTTCGT
* *
11236625 GGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCGGATCAAACCGAGGGTTGCGGTA
195 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTGCGGTA
* *
11236690 GCAAGATCGATAGCACACAGGGGGGGACCGAGCCGGTCCCTGGCTTGTGCATTCTACCTCTTCGA
260 GCAAGATCGATAGCACACAGGAGGGGACCGAGCCGGTCCCTGGCTTGTGCATTCTACCTCTCCGA
* * * *
11236755 TCAGCTGAGAGCCCGCACGTACGTTTCATGGGTTGGCTGAGGCATACGAAGTTCATTCCATGTCT
325 TCGGCTGAGAGCCCGCACGT-CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* * *
11236820 AAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGA-TCGAGGGTTACGACAGCAAGACCA
389 AAGCATACAGAGTTCATT-CCAATCTAAAATCGGACCAGACT-GAGGGTTACGACAACAAGACCA
* * * *
11236884 GCAGTAGGATCGGTAGCATGCAGTGGGGGATCGAGTCGATCCCCGGTTTGCGCATTCTGCCTCTC
452 GCAGCAGGATCGATAGCATGCAGTGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTC
* * * *
11236949 CGATCGACTGAGCGCCCACACGCTCGTTTTGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATG
517 CGATCGACTGAGCACCCACAAGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATG
* * * **
11237014 TCTAAGCCCCAGTTGGACCGAGGGTTGTGGCAGCAGGACTAGCAGCGGGATCGACAGCTCGTAGA
582 TCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCAGCAGCGGGATCGACAGCCCACAGA
* * *
11237079 AGGGGGCTGAGCTGATCCCCGGCTTGCACATTATGCCTCTCCGGCCAGCA
647 AGGGGGCTGAGCTAATCCCCAGCTTACACATTATGCCTCTCCGGCCAGCA
* * * *
11237129 TCTCC-AGCCGACTGAGAACCCACACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGTGTTCATT
1 TCTCCGA-CCGGCTGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT
*
11237193 CCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGATCGACATCATGCAGAGGGGGAC
65 CCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGACCGACATCATGCAGA-GGGGAC
*
11237258 CAGGCCGATCCCCGGCTTGCCCATTATGCCTCTCCGGCTGGCTCAGCACCCGAACGCTCATTTCG
129 CAGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCTGGCTCAGCACCCGAACGCTCATTTCG
* ** * * * * * *
11237323 TTGGTTGACTTAGGCATATAGAGTTCATTCCCAATCTAAGATCGGAT-AGGATCAAGTGTTGCGA
194 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCA-AACCGAGGGTTGCGG
* * * * ** *
11237387 TAGTAGGATCGATAGCACGCAGGAGGGGA-CTAGGTTGGTCCCTGGCTTGTGCATTCTGCCTCTC
258 TAGCAAGATCGATAGCACACAGGAGGGGACCGA-GCCGGTCCCTGGCTTGTGCATTCTACCTCTC
* *
11237451 CGATTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
322 CGATCGGCTGAGAGCCCGCACG-TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
11237516 TCTAAG
386 TCTAAG
11237522 TCCCAATCGG
Statistics
Matches: 971, Mismatches: 106, Indels: 24
0.88 0.10 0.02
Matches are distributed among these distances:
693 113 0.12
694 3 0.00
696 4 0.00
697 1 0.00
698 243 0.25
699 599 0.62
700 8 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (696 bp):
TCTCCGACCGGCTGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTC
CATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGACCGACATCATGCAGAGGGGACCA
GGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCTGGCTCAGCACCCGAACGCTCATTTCGTG
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTGCGGTAG
CAAGATCGATAGCACACAGGAGGGGACCGAGCCGGTCCCTGGCTTGTGCATTCTACCTCTCCGAT
CGGCTGAGAGCCCGCACGTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCATACAGAGTTCATTCCAATCTAAAATCGGACCAGACTGAGGGTTACGACAACAAGACCAGCAG
CAGGATCGATAGCATGCAGTGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAT
CGACTGAGCACCCACAAGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
AGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCAGCAGCGGGATCGACAGCCCACAGAAGGG
GGCTGAGCTAATCCCCAGCTTACACATTATGCCTCTCCGGCCAGCA
Found at i:11237520 original size:159 final size:160
Alignment explanation
Indices: 11237140--11238022 Score: 592
Period size: 159 Copynumber: 5.4 Consensus size: 160
11237130 CTCCAGCCGA
* * * * *
11237140 CTGAGAACCCACACGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGTGTTCATTCCATGTCTAAG
1 CTGAGCACCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
** * * * * * * * * * *
11237204 CCCCAGCT-GGACCGAGGGTTGTGGCAGCGGGATCGACATCATGCA-GAGGGGGACCAGGCCGAT
65 -ATCAGATCGGATCGAGGGTTGCGGTAGCAGGACCGACAGCACGCAGGAGGGGGACTAGGCTGAT
* * **
11237267 CCCCGGCTTGCCCATTATGCCTCTCCGGCTGG
129 CCCTGGCTTGCGCATTATGCCTCTCCGATTGG
* * * * * ** *
11237299 CTCAGCACCCGAACGCTCATTTCGTTGGTTGACTTAGGCATATAGAGTTCATTCCCA-ATCTAAG
1 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
* * * * * * * * * *
11237363 ATCGGATAGGATCAAGTGTTGCGATAGTAGGATCGATAGCACGCAGGA-GGGGACTAGGTTGGTC
65 ATCAGATCGGATCGAGGGTTGCGGTAGCAGGACCGACAGCACGCAGGAGGGGGACTAGGCTGATC
* *
11237427 CCTGGCTTGTGCATTCTGCCTCTCCGATTGG
130 CCTGGCTTGCGCATTATGCCTCTCCGATTGG
*
11237458 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-
1 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGA
* * * *
11237522 TCCCA-ATCGGACCGAGGGTTGTGGTAACAGGACC-AGCAGTGGGATCGACAACCCGTAGAGGGG
66 T--CAGATCGGATCGAGGGTTGCGGTAGCAGGACCGA-CA---GCA-CG-C-A---G--GAGGGG
* * *
11237585 GA-TCGAGCTGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCATCTTTGATCGG
117 GACTAG-GCTGATCCCTGGCTTGCGCATTATGCCTCT----CC-G-A----T--T-GG
* * * *
11237642 CTGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC-AAGC
1 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-
** * * * * * * ** * *
11237706 CCCAGCT-GGA-CTGAGGGTTGTGGCAGCGGGACCAACATCTTGCA-GAGGGGGACCAGGCCGAT
65 ATCAGATCGGATC-GAGGGTTGCGGTAGCAGGACCGACAGCACGCAGGAGGGGGACTAGGCTGAT
** *
11237768 -CCTCGGCTTGCGCATTATGCCTCTCCGGCTAG
129 CCCT-GGCTTGCGCATTATGCCTCTCCGATTGG
* * * * *
11237800 CTCAGCACCCGAACGCTCATTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCA-GTCTAAG
1 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
* * * * *
11237864 ATCAGATCGGATCGAGTGTTGCGGTAGCAGGATCGACAGTACGCAGGA-GGGGACTCGGCTGGTC
65 ATCAGATCGGATCGAGGGTTGCGGTAGCAGGACCGACAGCACGCAGGAGGGGGACTAGGCTGATC
* * *
11237928 CCTGGCTTGCGCATTCTGCCTCTTCGATCGG
130 CCTGGCTTGCGCATTATGCCTCTCCGATTGG
* *
11237959 CTGAGCCCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
11238023 CATACGGAGT
Statistics
Matches: 550, Mismatches: 126, Indels: 96
0.71 0.16 0.12
Matches are distributed among these distances:
158 63 0.11
159 299 0.54
160 13 0.02
162 2 0.00
163 2 0.00
164 1 0.00
165 1 0.00
166 1 0.00
167 2 0.00
168 1 0.00
170 6 0.01
171 61 0.11
172 1 0.00
175 2 0.00
176 1 0.00
177 2 0.00
178 1 0.00
179 1 0.00
181 1 0.00
182 1 0.00
183 29 0.05
184 59 0.11
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (160 bp):
CTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGA
TCAGATCGGATCGAGGGTTGCGGTAGCAGGACCGACAGCACGCAGGAGGGGGACTAGGCTGATCC
CTGGCTTGCGCATTATGCCTCTCCGATTGG
Found at i:11237929 original size:501 final size:502
Alignment explanation
Indices: 11236931--11238023 Score: 1688
Period size: 501 Copynumber: 2.2 Consensus size: 502
11236921 GATCCCCGGT
* * *
11236931 TTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCACACGCTCGTTTTGTGGGTTGGCTTAGGCA
1 TTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
* * * * *
11236996 TACGAAGTTCATTCCATGTCTAAGCCCCAGTTGGACCGAGGGTTGTGGCAGCAGGACTAGCAGCG
66 TACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGGCAACAGGACCAGCAGCG
* * * * *
11237061 GGATCGACAGCTCGTAGAAGGGGGCTGAGCTGATCCCCGGCTTGCACATTATGCCTCTCCGGCCA
131 GGATCGACAACCCGTAGAAGGGGGATGAGCTGATCCCCGACTTGCACATTATGCCTCTCCGACCA
* *
11237126 GCATCTCCAGCCGACTGAGAACCCACACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGTGTTCA
196 GCATCTCCAGCCGACTGAGAACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCA
* *
11237191 TTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGATCGACATCATGCAGAGGGGG
261 TTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGACCAACATCATGCAGAGGGGG
*
11237256 ACCAGGCCGATCCCCGGCTTGCCCATTATGCCTCTCCGGCTGGCTCAGCACCCGAACGCTCATTT
326 ACCAGGCCGATCCCCGGCTTGCCCATTATGCCTCTCCGGCTAGCTCAGCACCCGAACGCTCATTT
* * * *
11237321 CGTTGGTTGACTTAGGCATATAGAGTTCATTCCCAATCTAAGATCGGATAGGATCAAGTGTTGCG
391 CGTGGGTTGACATAGGCATACAGAGTTCATTCCCAATCTAAGATCAGATAGGATCAAGTGTTGCG
* * *
11237386 ATAGTAGGATCGATAGCACGCAGGAGGGGACTAGGTTGGTCCCTGGC
456 ATAGCAGGATCGACAGCACGCAGGAGGGGACTAGGCTGGTCCCTGGC
* *
11237433 TTGTGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
1 TTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
* * *
11237498 TACGGAGTTCATTCCATGTCTAAGTCCCAATCGGACCGAGGGTTGTGGTAACAGGACCAGCAGTG
66 TACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGGCAACAGGACCAGCAGCG
*
11237563 GGATCGACAACCCGTAG-AGGGGGATCGAGCTGATCCCCGACTTGCGCATTATGCCTCTCCGACC
131 GGATCGACAACCCGTAGAAGGGGGAT-GAGCTGATCCCCGACTTGCACATTATGCCTCTCCGACC
* ** * * *
11237627 GGCATCT-TTGATCGGCTGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
195 AGCATCTCCAG-CCGACTGAGAACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
* *
11237691 CATTCCATGTC-AAGCCCCAGCTGGACTGAGGGTTGTGGCAGCGGGACCAACATCTTGCAGAGGG
259 CATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGACCAACATCATGCAGAGGG
* *
11237755 GGACCAGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCTAGCTCAGCACCCGAACGCTCAT
324 GGACCAGGCCGATCCCCGGCTTGCCCATTATGCCTCTCCGGCTAGCTCAGCACCCGAACGCTCAT
* * * *
11237820 TTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGTGTTG
389 TTCGTGGGTTGACATAGGCATACAGAGTTCATTCCCAATCTAAGATCAGATAGGATCAAGTGTTG
* * *
11237885 CGGTAGCAGGATCGACAGTACGCAGGAGGGGACTCGGCTGGTCCCTGGC
454 CGATAGCAGGATCGACAGCACGCAGGAGGGGACTAGGCTGGTCCCTGGC
* * *
11237934 TTGCGCATTCTGCCTCTTCGATCGGCTGAGCCCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCA
1 TTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
11237999 TACGGAGTTCATTCCATGTCTAAGC
66 TACGGAGTTCATTCCATGTCTAAGC
11238024 ATACGGAGTT
Statistics
Matches: 535, Mismatches: 54, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
501 303 0.57
502 232 0.43
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (502 bp):
TTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
TACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGGCAACAGGACCAGCAGCG
GGATCGACAACCCGTAGAAGGGGGATGAGCTGATCCCCGACTTGCACATTATGCCTCTCCGACCA
GCATCTCCAGCCGACTGAGAACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCA
TTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGACCAACATCATGCAGAGGGGG
ACCAGGCCGATCCCCGGCTTGCCCATTATGCCTCTCCGGCTAGCTCAGCACCCGAACGCTCATTT
CGTGGGTTGACATAGGCATACAGAGTTCATTCCCAATCTAAGATCAGATAGGATCAAGTGTTGCG
ATAGCAGGATCGACAGCACGCAGGAGGGGACTAGGCTGGTCCCTGGC
Found at i:11238046 original size:26 final size:26
Alignment explanation
Indices: 11237996--11238048 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11237986 GTTGGCTTAG
*
11237996 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
11238022 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
11238048 G
1 G
11238049 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:11238424 original size:26 final size:26
Alignment explanation
Indices: 11238388--11238440 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11238378 GTTGGCTTAG
11238388 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11238414 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11238440 G
1 G
11238441 AGTTTGAGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11238919 original size:165 final size:165
Alignment explanation
Indices: 11238620--11238922 Score: 360
Period size: 165 Copynumber: 1.8 Consensus size: 165
11238610 TGGGTTGGCT
* * *
11238620 TAGGCATAGGGAGTTCATTTCATATCTAAGCCCCAGTCGGTTCGAGGCTTGTGGCAGTGGGACTG
1 TAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGTCGGATCGAGGCTTGTGGCAGCGGGACTG
* * * * * *
11238685 GCAGCACATGGAGAGGGATCAGGTCGATCCTCGGCTTGCGCACTATGCCTCTCCGACTAGCTCAG
66 ACAGCACATAGAGAGGGACCAGGTCGATCCTCGGCTTACACACTATGCCTCTCCGACCAGCTCAG
11238750 CGCCCGTACCCTCTTTTTATGGGTTGACTTAGGCA
131 CGCCCGTACCCTCTTTTTATGGGTTGACTTAGGCA
* * *
11238785 TAGGCATAGGGAGTTCATTCCATGTCTATGCCCCAG-CTGGATCGAGGGTTGTGGCAGCGGGA-T
1 TAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGTC-GGATCGAGGCTTGTGGCAGCGGGACT
** * * * * * * *
11238848 CGACAGCATGTAGAGGGGGACC-GGGCTGATCCTCGGCTTACACATTCTGCCTCTTCGACCGGTT
65 -GACAGCACATAGAGAGGGACCAGGTC-GATCCTCGGCTTACACACTATGCCTCTCCGACCAGCT
*
11238912 GAGCGCCCGTA
128 CAGCGCCCGTA
11238923 TGCTCGTTCC
Statistics
Matches: 113, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
164 5 0.04
165 108 0.96
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (165 bp):
TAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGTCGGATCGAGGCTTGTGGCAGCGGGACTG
ACAGCACATAGAGAGGGACCAGGTCGATCCTCGGCTTACACACTATGCCTCTCCGACCAGCTCAG
CGCCCGTACCCTCTTTTTATGGGTTGACTTAGGCA
Found at i:11239703 original size:26 final size:26
Alignment explanation
Indices: 11239673--11239723 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
11239663 TGACTTAGGT
*
11239673 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGAAGTTCATCCCCAGTCTAAGC
**
11239699 ATACGAAGTTCATTTCCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
11239724 ATCAGACCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGC
Found at i:11240158 original size:158 final size:156
Alignment explanation
Indices: 11239697--11240198 Score: 485
Period size: 158 Copynumber: 3.2 Consensus size: 156
11239687 CCCAGTCTAA
* *
11239697 GCATACGAAGTTCATTTCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGATAGCAGGATCGACA
1 GCATACGAAGTTCATTTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * **
11239762 GCATGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTTCGGTTGGCTGAGCACC
66 GCATGCAGGGGGGATCAGG-CGATCCCCAGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGTGCC
* *
11239827 CGCACGCTCGTTTCTTGGGATGGCTTAG
130 CGCACGCTCGTTTCATGGG-TTGCTTAG
* * * * ** * * * * *
11239855 CCATAGGGAGTTCA-TTGCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAG-TGAGACCG
1 GCATACGAAGTTCATTTCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCGGTAGCAG-GATCG
* * * * *
11239917 ACAGCATGCAGAGGGGGATCAGGCTGATCCTCGGCTTGTACATTATGCCTCTCCGG-CTGGCTCA
63 ACAGCATGCAG-GGGGGATCAGGC-GATCCCCAGCTTGCACATTCTGCCTCTCCGGTC-GGCTGA
* *
11239981 ATGCCCGCACGCTCATTTCATGGGTTGACTTAG
125 GTGCCCGCACGCTCGTTTCATGGGTTG-CTTAG
* * *
11240014 GCA-ATCGAAGTTCATTTCCAGTTTAAGATCAGACCAGATCGAGGGTTACGGTAGCAGGATCGAC
1 GCATA-CGAAGTTCATTTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * * * *
11240078 AGCACGTAGGGGGGATTAGGTCGGTCCCCAGCTTGCCCATTCTGCCTCTCCGGTCGGTTGAGTGC
65 AGCATGCAGGGGGGATCAGG-CGATCCCCAGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGTGC
*
11240143 CTGCACGCTCGTTTCATGGGTTCGCTTAG
129 CCGCACGCTCGTTTCATGGGTT-GCTTAG
*
11240172 GCATACGGAGTTCA-TTCCATGTCTAAG
1 GCATACGAAGTTCATTTCCA-GTCTAAG
11240199 CATACGGAGT
Statistics
Matches: 269, Mismatches: 59, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
157 10 0.04
158 140 0.52
159 114 0.42
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (156 bp):
GCATACGAAGTTCATTTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACA
GCATGCAGGGGGGATCAGGCGATCCCCAGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGTGCCC
GCACGCTCGTTTCATGGGTTGCTTAG
Found at i:11240222 original size:26 final size:26
Alignment explanation
Indices: 11240172--11240224 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11240162 GTTCGCTTAG
*
11240172 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
11240198 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
11240224 G
1 G
11240225 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:11240588 original size:26 final size:26
Alignment explanation
Indices: 11240552--11240604 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11240542 GTTGACTTAG
*
11240552 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
11240578 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11240604 G
1 G
11240605 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11240690 original size:184 final size:184
Alignment explanation
Indices: 11240520--11240866 Score: 487
Period size: 184 Copynumber: 1.9 Consensus size: 184
11240510 GTCGGTTGAG
* * * *
11240520 CACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCATTCTAAGCATACG
1 CACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATCCCCAGTCTAAGCATACG
* ** * * * *
11240585 GAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGATAGCAAGATCGACAGCGCGTA
66 GAGTTCATTCCCAGTCTAAGATCAAACCGAACCAAGGGTTACGACAACAAGATCGACAGCACGTA
* * * *
11240650 GGGGGGATCGGGCCGATCCCTGGCTTGTGCATTGTACCTCTCCGATCGACTCAA
131 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTGTACCTCTCCGATCGACTCAA
* * *
11240704 CGCTCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATCCTCAGTCTAAGCATACG
1 CACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATCCCCAGTCTAAGCATACG
* * * *
11240769 GAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTACGGCAACAGGATCGACAGCATGTA
66 GAGTTCATTCCCAGTCTAAGATCAAACCGAACCAAGGGTTACGACAACAAGATCGACAGCACGTA
*
11240834 AGGGGGACCGGGCTGATCCCCGGCTTGCGCATT
131 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATT
11240867 CTGTCTCTCT
Statistics
Matches: 140, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
184 140 1.00
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.23
Consensus pattern (184 bp):
CACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATCCCCAGTCTAAGCATACG
GAGTTCATTCCCAGTCTAAGATCAAACCGAACCAAGGGTTACGACAACAAGATCGACAGCACGTA
AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTGTACCTCTCCGATCGACTCAA
Found at i:11240772 original size:26 final size:26
Alignment explanation
Indices: 11240736--11240788 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11240726 GTTGACTTAG
11240736 GCATACGGAGTT-AATCCTCAGTCTAA
1 GCATACGGAGTTCAATCC-CAGTCTAA
*
11240762 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
11240788 G
1 G
11240789 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:11240946 original size:184 final size:184
Alignment explanation
Indices: 11240539--11240947 Score: 464
Period size: 184 Copynumber: 2.2 Consensus size: 184
11240529 GCTCGTTTTG
11240539 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAT-TCTAAGCATACGGAGTTCATTCCCAGTCTA
1 TGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* ** * * * * * *
11240603 AGATCAGACCGAACTGAGGGTTGCGATAGCAAGATCGACAGCGCGTAGGGGGGATCGGGCCGATC
65 AGATCAAACCGAACCAAGGGTTACGACAACAAGATCGACAGCACGTAAGGGGGACCGGGCCGATC
* * * * * * *
11240668 CCTGGCTTGTGCATTGTACCTCTCCGATCGACTCAACGCTCGAACGCTCGTTTCG
130 CCCGGCTTGCGCATTCTACCTCTCCGACCGACTCAACGCCCGAACGCTAGTTTCA
*
11240723 TGGGTTGACTTAGGCATACGGAGTTAATCCTCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTA
1 TGGGTTGACTTAGGCATACGGAGTTCATCC-CATGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * *
11240787 AGATCAAACCGGACCAAGGGTTACGGCAACAGGATCGACAGCATGTAAGGGGGACCGGGCTGATC
65 AGATCAAACCGAACCAAGGGTTACGACAACAAGATCGACAGCACGTAAGGGGGACCGGGCCGATC
** * * * ** *
11240852 CCCGGCTTGCGCATTCTGTCTCTCTGGCCGGCT-AAGCGCCCGCCCTCTAGTTTCA
130 CCCGGCTTGCGCATTCTACCTCTCCGACCGACTCAA-CGCCCGAACGCTAGTTTCA
* * * *
11240907 TGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGC
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGC
11240948 CCCAGTCAGA
Statistics
Matches: 186, Mismatches: 35, Indels: 8
0.81 0.15 0.03
Matches are distributed among these distances:
183 6 0.03
184 180 0.97
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (184 bp):
TGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCAAACCGAACCAAGGGTTACGACAACAAGATCGACAGCACGTAAGGGGGACCGGGCCGATCC
CCGGCTTGCGCATTCTACCTCTCCGACCGACTCAACGCCCGAACGCTAGTTTCA
Found at i:11241109 original size:26 final size:26
Alignment explanation
Indices: 11241079--11241131 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11241069 GTTGGCTTAG
11241079 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
11241105 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11241131 G
1 G
11241132 ACTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11242039 original size:26 final size:26
Alignment explanation
Indices: 11242000--11242052 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11241990 GTTGGCTTAT
*
11242000 GCATACAGAGTTCA-TTCCATGTCTAA
1 GCATACAGAATTCATTTCCA-GTCTAA
*
11242026 GCATACGGAATTCATTTCCAGTCTAA
1 GCATACAGAATTCATTTCCAGTCTAA
11242052 G
1 G
11242053 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAATTCATTTCCAGTCTAA
Found at i:11242225 original size:26 final size:26
Alignment explanation
Indices: 11242196--11242248 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11242186 GTTGACTTAG
11242196 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
11242222 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11242248 G
1 G
11242249 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11242681 original size:26 final size:26
Alignment explanation
Indices: 11242643--11242695 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11242633 GTTGGCTTAG
* **
11242643 GCATACGGGGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11242669 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11242695 G
1 G
11242696 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11242882 original size:26 final size:26
Alignment explanation
Indices: 11242853--11242905 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11242843 GTTGACTTAG
*
11242853 GCATACGGAGTTCGTCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
11242879 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11242905 G
1 G
11242906 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11243199 original size:159 final size:158
Alignment explanation
Indices: 11242879--11243373 Score: 390
Period size: 159 Copynumber: 3.2 Consensus size: 158
11242869 CCCAGTCTAA
* * * * * * *
11242879 GCATATGGAGTTCATTCTCA-GTCTAAG-ATCAGACCGGACCGAGGGTTTCAGC-GCAGGATCGA
1 GCATACGGAGTTCATTC-CATGTCTAAGCACCAGATCAGACCAAGGGTTGCAACAGCAGGATCGA
* ** ** * * * * *
11242941 CAGCACGCAGGGGGGATCGAGCCGATCCCTGGCTTGCACATTCTGCCTCTCC-G---GCCCA-C-
65 CAGCACGCAGGGGGGACCGAGCTAATCCCCAGCTTACGCATTATACCTCTCCAGCCAGCTCAGCG
*
11243000 CCACACAC-C-CATTTCGTGGGTTGGCTTAG
130 CC-CGCACGCTCATTTCGTGGGTT-GCTTAG
* * *** * *
11243029 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGACCAAGGGTTGTGGCAGCGGGATCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAGACCAAGGGTTGCAACAGCAGGATCGAC
* * * * * *
11243093 AGCACGCAGAGGGGGATCGGGCTAATCTCCGGCTTACGCATTATGCCTCTCCAGCCGGCTCAGCG
66 AGCACGCAG-GGGGGACCGAGCTAATCCCCAGCTTACGCATTATACCTCTCCAGCCAGCTCAGCG
*
11243158 CCCGCACGCTCATTTTGTGGGTTGACTTAG
130 CCCGCACGCTCATTTCGTGGGTTG-CTTAG
* * * ** *
11243188 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCGGATCAGACTGAGGGTTGCAACAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCAGACCAAGGGTTGCAACAGCAGGATCGA
* ** * * * * * *
11243251 TAGCACGCAGGGGGGACCGAGCTGGTCCCCAGCTTACGCTTTCTACTTTTCCAGCTAGCTGAGCG
65 CAGCACGCAGGGGGGACCGAGCTAATCCCCAGCTTACGCATTATACCTCTCCAGCCAGCTCAGCG
*
11243316 CCCGCACGCTCGTTTCGTGGGTTTG-TTAG
130 CCCGCACGCTCATTTCGTGGG-TTGCTTAG
11243345 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
11243374 TACGGAGTTC
Statistics
Matches: 274, Mismatches: 53, Indels: 28
0.77 0.15 0.08
Matches are distributed among these distances:
149 2 0.01
150 36 0.13
151 21 0.08
152 34 0.12
153 1 0.00
156 7 0.03
157 31 0.11
158 67 0.24
159 72 0.26
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAGACCAAGGGTTGCAACAGCAGGATCGAC
AGCACGCAGGGGGGACCGAGCTAATCCCCAGCTTACGCATTATACCTCTCCAGCCAGCTCAGCGC
CCGCACGCTCATTTCGTGGGTTGCTTAG
Found at i:11243381 original size:26 final size:26
Alignment explanation
Indices: 11243345--11243397 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11243335 GGTTTGTTAG
11243345 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11243371 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11243397 G
1 G
11243398 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11244103 original size:26 final size:26
Alignment explanation
Indices: 11244067--11244119 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11244057 GTTAACTTAG
11244067 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
11244093 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11244119 G
1 G
11244120 ATCTAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11244969 original size:26 final size:26
Alignment explanation
Indices: 11244939--11244991 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
11244929 GTTGACTTAG
11244939 GCATAC-GAAGTTCA-TCTCCAGTCTAA
1 GCATACAG-AGTTCATTC-CCAGTCTAA
11244965 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11244991 G
1 G
11244992 ATCGAACAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11245439 original size:158 final size:156
Alignment explanation
Indices: 11244965--11245466 Score: 443
Period size: 158 Copynumber: 3.2 Consensus size: 156
11244955 TCCAGTCTAA
* * *
11244965 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTACGACAGCAGGATCGATA
1 GCATACAGAATTCATTCCCAGTCTAAGATCG-ACAGGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * *
11245030 GCACGCAGTGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATTGGCTAAGTGCC
65 GCACGTAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTAAGCGCC
** * * *
11245095 TACACGCCCGTTTCGTGGGTTAGCTTAG
130 CGCACGCTCGTTTC-TTGGTTGGCTTAG
** * ** * * * * * * * * *
11245123 GCATAGGGACTTCATT-CCATGTCTAAGCCCCAGCCGAACTGAGGGTTGTGGCAGCGGGACCGGC
1 GCATACAGAATTCATTCCCA-GTCTAAGATCGA-CAGGACCGAGGGTTGCGACAGCAGGATCGAC
* * * * * * *
11245187 AGCACGTAGAGGGGGATCGGGCCTATCCCCGGCTTGCGCATTAAGCCTTTCTGG-CTGGCTCAGC
64 AGCACGTAG-GGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGGTC-GGCTAAGC
* * * *
11245251 GCCCGAACGCTCATTTCGTGAGTTGACTTAG
127 GCCCGCACGCTCGTTTCTTG-GTTGGCTTAG
* * * *
11245282 GCATACAGAATTAATTCCCAGTCTAAGATTCGACTGGACCGAGGGTTGCAATAGCAGGATCGACA
1 GCATACAGAATTCATTCCCAGTCTAAGA-TCGACAGGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * *
11245347 ACACGTAGGGGGGATCGGGTCGATCCCCGACTTGTGCAATATGCCTCTCCGGTCGACTGAGCGCC
65 GCACGTAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTAAGCGCC
11245412 CGCACGCTCGTTTCATTGGTTGGCTTAG
130 CGCACGCTCGTTTC-TTGGTTGGCTTAG
* *
11245440 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACAGAATTCATTCCCA-GTCTAAG
11245467 CATACGGAGT
Statistics
Matches: 261, Mismatches: 73, Indels: 20
0.74 0.21 0.06
Matches are distributed among these distances:
157 7 0.03
158 137 0.52
159 112 0.43
160 5 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATACAGAATTCATTCCCAGTCTAAGATCGACAGGACCGAGGGTTGCGACAGCAGGATCGACAG
CACGTAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTAAGCGCCC
GCACGCTCGTTTCTTGGTTGGCTTAG
Found at i:11245471 original size:26 final size:26
Alignment explanation
Indices: 11245440--11245492 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11245430 GTTGGCTTAG
11245440 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTGCCA-GTCTAA
11245466 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
11245492 G
1 G
11245493 ATCAGAATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCAGTCTAA
Found at i:11246000 original size:26 final size:26
Alignment explanation
Indices: 11245964--11246016 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11245954 GTTGACTTAG
11245964 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
11245990 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11246016 G
1 G
11246017 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11246451 original size:158 final size:158
Alignment explanation
Indices: 11245990--11246491 Score: 534
Period size: 158 Copynumber: 3.2 Consensus size: 158
11245980 CCCAGTCTAA
*
11245990 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGAC
** * * ** * * * *
11246054 AGCACACAGGGGGGACCGAGCCGATCCCCGACTAGCACATTCTGCCTCTCCGGCCTGCTGAGTGC
65 AGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTTCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* * * *
11246119 CCGCACACCCATTTT-GTGGGTTGGCTTAG
130 CCACACGCTC-TTTTCGTGGGTTGACTTAG
* ** * * ** *
11246148 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAGC-GAGACCTG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGCGATAGCAG-GATC-G
* * * *
11246211 -TAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGT-GCATTATGCCTCTCCGATCGGCTCA
63 ACAGCACGTAG-GGGGGACCGGGCCGATCCCCGGCTT-TCGCATTCTGCCTCTCCGGTCGGCTGA
* *
11246274 GCGCCCACGCGCTCATTTCGTGGGTTGACTTAG
126 GCGCCCACACGCTCTTTTCGTGGGTTGACTTAG
* *
11246307 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGCAATAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGAC
* * * *
11246371 AGCATGTAGGGGGGACCGGGCCAATCCCCGGCTTTCGCATTCTGCCTCTTCGGTAGGCTGAGCGC
65 AGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTTCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* *
11246436 CCACACGTTCTTTTCGTGGGTT-AGCTTAC
130 CCACACGCTCTTTTCGTGGGTTGA-CTTAG
11246465 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
11246492 CATACGGAGT
Statistics
Matches: 279, Mismatches: 51, Indels: 28
0.78 0.14 0.08
Matches are distributed among these distances:
157 9 0.03
158 150 0.54
159 116 0.42
160 4 0.01
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGACA
GCACGTAGGGGGGACCGGGCCGATCCCCGGCTTTCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
CACACGCTCTTTTCGTGGGTTGACTTAG
Found at i:11246501 original size:26 final size:26
Alignment explanation
Indices: 11246465--11246517 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11246455 GTTAGCTTAC
11246465 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
11246491 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11246517 G
1 G
11246518 ATCAAATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11246830 original size:26 final size:26
Alignment explanation
Indices: 11246794--11246843 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
11246784 GACTTAGGCG
*
11246794 TACGGAGTTCACCCCCAGTCTAAGCA
1 TACGAAGTTCACCCCCAGTCTAAGCA
**
11246820 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCACCCCCAGTCTAAG
11246844 ATCGGATCGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (26 bp):
TACGAAGTTCACCCCCAGTCTAAGCA
Found at i:11247212 original size:158 final size:157
Alignment explanation
Indices: 11246817--11247213 Score: 370
Period size: 158 Copynumber: 2.5 Consensus size: 157
11246807 CCCAGTCTAA
* * * * * *
11246817 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGTAGGATCGATA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGATTGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * * * *
11246882 GCAC-CCAGAGGGGACCGGGCCGAGCCCCGGCTTGTGTATTTTGCCTCTCCGGTCGGCTGAGCGC
65 GCACGCAAG-GGGGATCGAGCCGAGCCCCGACTTGTGCATTATGCCTCTCCAGCCGGCTCAGCGA
* *
11246946 CCGCACGCACGTTTCATGGGTTGGCTTAG
129 CCGAACGCACGTTTCATGGGTTGACTTAG
* ** * * * *
11246975 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACTGGACCGAGGGTTGTGGCAGCGGGA-CTAA
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGATTGGACCGAGGGTTGCGGCAGCAGGATC-GA
* ** * * *
11247038 CAGCATGCAAAAGGGATCGAGCCGATCCCCGACTTGTGCATTATGCCTCTCTAGCCTGCTCAGCG
63 CAGCACGCAAGGGGGATCGAGCCGAGCCCCGACTTGTGCATTATGCCTCTCCAGCCGGCTCAGCG
* * *
11247103 ATCGAACGCTCGTTT-AGTGGTTTGACTTAG
128 ACCGAACGCACGTTTCA-TGGGTTGACTTAG
* *
11247133 GGATACGGAGTTCATTCCTAGTCTAAGATCAGATTGGACCAAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGATTGGACCGAGGGTTGCGGCAGCAGGATCGACA
*
11247198 ACACGCAAGGGGGATC
65 GCACGCAAGGGGGATC
11247214 AGGTTGGTCC
Statistics
Matches: 184, Mismatches: 47, Indels: 16
0.74 0.19 0.06
Matches are distributed among these distances:
157 7 0.04
158 172 0.93
159 5 0.03
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGATTGGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAAGGGGGATCGAGCCGAGCCCCGACTTGTGCATTATGCCTCTCCAGCCGGCTCAGCGACC
GAACGCACGTTTCATGGGTTGACTTAG
Found at i:11247330 original size:26 final size:26
Alignment explanation
Indices: 11247291--11247342 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11247281 GTTAGCTTAG
*
11247291 GCATACAGAATTCATTCCATGTCTAA
1 GCATACAGAATTCATTCCAAGTCTAA
* *
11247317 GCATATAGAGTTCATTCCAAGTCTAA
1 GCATACAGAATTCATTCCAAGTCTAA
11247343 AATCAGGCCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.31
Consensus pattern (26 bp):
GCATACAGAATTCATTCCAAGTCTAA
Found at i:11247524 original size:26 final size:26
Alignment explanation
Indices: 11247488--11247538 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11247478 TTGACTTAGG
*
11247488 CATACGGAGTTC-ATCCCCAGTCTAAC
1 CATACAGAGTTCAAT-CCCAGTCTAAC
11247514 CATACAGAGTTCAATCCCAGTCTAA
1 CATACAGAGTTCAATCCCAGTCTAA
11247539 GATCGGATCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.31, C:0.31, G:0.14, T:0.24
Consensus pattern (26 bp):
CATACAGAGTTCAATCCCAGTCTAAC
Found at i:11247895 original size:26 final size:26
Alignment explanation
Indices: 11247855--11247907 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11247845 GTTGACTTAG
11247855 GCATACGAAGCTCATCCCCAGTCTAA
1 GCATACGAAGCTCATCCCCAGTCTAA
* * *
11247881 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGCTCATCCCCAGTCTAA
11247907 G
1 G
11247908 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGCTCATCCCCAGTCTAA
Found at i:11248223 original size:159 final size:156
Alignment explanation
Indices: 11247881--11248277 Score: 372
Period size: 159 Copynumber: 2.5 Consensus size: 156
11247871 CCCAGTCTAA
* *
11247881 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTA--GTAGCAGGACCGACA
* *** * * ** *
11247946 GCACACAGGGGGGACTGGGCCGATCCTTGGCTTACGCATTCTGCCTCTTTAGCCAGCTGAGCACC
64 GCACACAGGAGGGACTGGGCCGATCCCCAGCTTACACATTATGCCTCTCCAGCCAGCTCAGCACC
* *
11248011 CGCAAGGCCGTTTCATGGGTTGGCTTAG
129 CGCAACGCCGTTTCATGGGTTGACTTAG
* * * * *
11248039 GCATAGGGAGTTCATT-CCATTTCTAAGCCCCA-ACTGGACCGAGGGTT-GTCGCAATGGGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGACCGGACCGAGGGTTAGTAGC-A--GGACCG
* *
11248101 ACAGCACACAGAGAGGGACTGGGCCGATCCCCAGCTTGCACATTATGCCTCTCCAGCCGGCTCAG
61 ACAGCACACAG-GAGGGACTGGGCCGATCCCCAGCTTACACATTATGCCTCTCCAGCCAGCTCAG
* *
11248166 C-CACTG-AACGCTCGTTTCGTGGGTTGACTTAG
125 CAC-CCGCAACGC-CGTTTCATGGGTTGACTTAG
* * * * * * *
11248198 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGAGTTGTGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAG-GGT-TAGTAGCAGGACCGACA
* *
11248263 GCACTCAGGGGGGAC
64 GCACACAGGAGGGAC
11248278 CGAGCTAGTC
Statistics
Matches: 191, Mismatches: 35, Indels: 26
0.76 0.14 0.10
Matches are distributed among these distances:
155 4 0.02
156 1 0.01
157 3 0.02
158 64 0.34
159 109 0.57
160 5 0.03
161 2 0.01
162 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.21
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTAGTAGCAGGACCGACAGC
ACACAGGAGGGACTGGGCCGATCCCCAGCTTACACATTATGCCTCTCCAGCCAGCTCAGCACCCG
CAACGCCGTTTCATGGGTTGACTTAG
Found at i:11248386 original size:26 final size:26
Alignment explanation
Indices: 11248356--11248408 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11248346 GTTGACTTAG
11248356 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
11248382 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11248408 G
1 G
11248409 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11248541 original size:184 final size:183
Alignment explanation
Indices: 11248338--11248750 Score: 533
Period size: 184 Copynumber: 2.3 Consensus size: 183
11248328 CGCATGCTCA
* * * *
11248338 TTTCATTGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGAAGTCCATTCCCAG
* * *
11248403 TCTAAGATCGGACCGGA-CCGAGGGTTGCGGTACCAGGATCGGTAGCACGCAGTGGGGACCAGGC
66 TCAAAGATCGGACC-GATCCGAGGGTTGCGGTACCAGGATCGGCAGCACGCAGGGGGGACCAGGC
* * *
11248467 CAATCCTCAGCTTACACATTCTGCCTCTCTGACCGGCTAAGCGCCCGCACGCTCG
130 CAATCCCCAGCTTACACATTCTGCC-CTCTGACCGACTAAGCGCCCGCACGCCCG
** *
11248522 TTTTGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTGAGCATATGAAGTCCATTCCCAG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGAAGTCCATTCCCAG
* * * * * *
11248587 TCAAAGATCGGACCGATCTGAGGGTTGTGGTAGCAGGATTGGCAGCATGCAGGGGGGACCGGGCC
66 TCAAAGATCGGACCGATCCGAGGGTTGCGGTACCAGGATCGGCAGCACGCAGGGGGGACCAGGCC
* * * * * *
11248652 AATCCCCAGCTTGCACATTCTGCCCTCTGATCGATTGAGTGCCCGCATGCCCG
131 AATCCCCAGCTTACACATTCTGCCCTCTGACCGACTAAGCGCCCGCACGCCCG
* * *
11248705 TTTCATGCGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
11248751 CCCAACTGGA
Statistics
Matches: 196, Mismatches: 31, Indels: 5
0.84 0.13 0.02
Matches are distributed among these distances:
182 3 0.02
183 60 0.31
184 133 0.68
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (183 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGAAGTCCATTCCCAG
TCAAAGATCGGACCGATCCGAGGGTTGCGGTACCAGGATCGGCAGCACGCAGGGGGGACCAGGCC
AATCCCCAGCTTACACATTCTGCCCTCTGACCGACTAAGCGCCCGCACGCCCG
Found at i:11249030 original size:278 final size:277
Alignment explanation
Indices: 11248534--11249059 Score: 721
Period size: 277 Copynumber: 1.9 Consensus size: 277
11248524 TTGTGGGTTG
* * **
11248534 GCTTAGGCATACGGAGTTCATCCCCAGTCTGAGCATATGAAGTCCATTCCCAGTCAAAGATCGGA
1 GCTTAGGCATACGGAGTTCATCCCCAATCTAAGCATATGAAGTCCATTCCCAGTCAAAGATCAAA
* * * * *
11248599 CCGATCTGAGGGTTGTGGTAGCAGGATTGGCAGCATGCAGGGGGGACCGGGCCAATCCCCAGCTT
66 CCGATCTGAAGGTTGCGGTAGCAGGATCGGCAGCACGCAGGAGGGACCGGGCCAATCCCCAGCTT
* * ** *
11248664 GCACATTCTGCCCTCTGATCGATTGAGTGCCCGCATGCCCGTTTCATGCGTTGGCTTAGGCATAG
131 GCACATTCTGCCCTCCGATCGATTGAGCGCCCGCACACCCATTTCATGCGTTGGCTTAGGCATAG
* * *
11248729 GGAGTTCATTCCATGTCTAAGCCCCAACTGGATCGAGGGTTGTGGCATCAGGACCCTTTTTTTTG
196 GGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAACAGGACCCTTTTTTTTG
11248794 AATCGGACCCATTCCGA
261 AATCGGACCCATTCCGA
* * * *
11248811 GCTTAGGCATACGGAGTTCATCCCCAATCTAAGCATATGGAGTTCATTCTCAGTCTAAGATCAAA
1 GCTTAGGCATACGGAGTTCATCCCCAATCTAAGCATATGAAGTCCATTCCCAGTCAAAGATCAAA
* * * * * * * *
11248876 TCGGATC-GAAGGTTGCGTTAGTAGGATCGGTAGCACGCAGGAGGGATCGGGTCGATCCCCGGCT
66 -CCGATCTGAAGGTTGCGGTAGCAGGATCGGCAGCACGCAGGAGGGACCGGGCCAATCCCCAGCT
* * * * *
11248940 TGCACAATTTTGCTCTCCGGTCGATTGAGCGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCAT
130 TGCAC-ATTCTGCCCTCCGATCGATTGAGCGCCCGCACACCCATTTCATGCGTTGGCTTAGGCAT
11249005 AGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAACAGGA
194 AGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAACAGGA
11249060 TCGGCAGTAC
Statistics
Matches: 213, Mismatches: 34, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
277 107 0.50
278 106 0.50
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (277 bp):
GCTTAGGCATACGGAGTTCATCCCCAATCTAAGCATATGAAGTCCATTCCCAGTCAAAGATCAAA
CCGATCTGAAGGTTGCGGTAGCAGGATCGGCAGCACGCAGGAGGGACCGGGCCAATCCCCAGCTT
GCACATTCTGCCCTCCGATCGATTGAGCGCCCGCACACCCATTTCATGCGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAACAGGACCCTTTTTTTTG
AATCGGACCCATTCCGA
Found at i:11250065 original size:26 final size:26
Alignment explanation
Indices: 11250029--11250081 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11250019 GTTAACTTAG
11250029 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
11250055 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11250081 G
1 G
11250082 ATCAGATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11250509 original size:158 final size:158
Alignment explanation
Indices: 11250090--11250551 Score: 491
Period size: 159 Copynumber: 2.9 Consensus size: 158
11250080 AGATCAGATA
* * ** *
11250090 AACTGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCAACTTGCA
1 AACTGAGGGTTGCGGCAGTAGGATCAACAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCG
* * * * * * * *
11250155 CATTTTGCCTCTCCGGTCGGCTGAGTGCTCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGG
66 CATTATGCCTCTCCGATCGACTGAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATA-CG
* * * * *
11250220 AGTTCATT-CCATGTCTAAGCCCCAGCTG
130 AGTTCATTCCCATGTCCAAGACCAAACCG
* * *** * * *
11250248 AACCGAGGGTTGTGGCAACGGGATTAGCAGCACGCAGAGGGGGACCAGGTCGATCCCTGGCTTGC
1 AACTGAGGGTTGCGGCAGTAGGATCAACAGCACGCAG-GGGGGACCAGGTCGATCCCCGGCTTGC
* * * *
11250313 GCATTATGCCTCTCCGTTC-AGCTCAGTGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATAC
65 GCATTATGCCTCTCCGATCGA-CTGAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATAC
*
11250377 AGAGTTCATTCCCAT-TCCAAGATCAAACCG
129 -GAGTTCATTCCCATGTCCAAGACCAAACCG
* ** *
11250407 GACTGAGGGTTGCGATAGTAGGATCAACAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGTG
1 AACTGAGGGTTGCGGCAGTAGGATCAACAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCG
* * ** *
11250472 CATTCTGCCTCTCCGACCGACTGAGCACCCGTACACTCGTTTCGTGGGTTGGCTTAGGCATACGA
66 CATTATGCCTCTCCGATCGACTGAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACG-
11250537 AGTTCATT-CCATGTC
130 AGTTCATTCCCATGTC
11250552 TAAGCCCCAG
Statistics
Matches: 246, Mismatches: 51, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
157 5 0.02
158 117 0.48
159 120 0.49
160 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
AACTGAGGGTTGCGGCAGTAGGATCAACAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCG
CATTATGCCTCTCCGATCGACTGAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGA
GTTCATTCCCATGTCCAAGACCAAACCG
Found at i:11250574 original size:158 final size:158
Alignment explanation
Indices: 11250094--11250576 Score: 540
Period size: 158 Copynumber: 3.1 Consensus size: 158
11250084 CAGATAAACT
* * ** *
11250094 GAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCAACTTGCACATT
1 GAGGGTTGCGGCAGTAGGATCAACAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATT
* * * * * * * * *
11250159 TTGCCTCTCCGGTCGGCTGAGTGCTCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
66 ATGCCTCTCCGATCGACTGAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTT
*
11250224 CATTCCATGTCTAAGCCCCAGCTGAACC
131 CATTCCATGTCTAAGCCCCAGCTGGACC
* *** * * *
11250252 GAGGGTTGTGGCAACGGGATTAGCAGCACGCAGAGGGGGACCAGGTCGATCCCTGGCTTGCGCAT
1 GAGGGTTGCGGCAGTAGGATCAACAGCACGCAG-GGGGGACCAGGTCGATCCCCGGCTTGCGCAT
* * * *
11250317 TATGCCTCTCCGTTC-AGCTCAGTGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATAC-AGA
65 TATGCCTCTCCGATCGA-CTGAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGA-A
* ** * * * *
11250380 GTTCATTCCCAT-TCCAAGATCAAACCGGACT
128 GTTCATT-CCATGTCTAAGCCCCAGCTGGACC
** *
11250411 GAGGGTTGCGATAGTAGGATCAACAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGTGCATT
1 GAGGGTTGCGGCAGTAGGATCAACAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATT
* * ** *
11250476 CTGCCTCTCCGACCGACTGAGCACCCGTACACTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTT
66 ATGCCTCTCCGATCGACTGAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTT
11250541 CATTCCATGTCTAAGCCCCAGCTGGACC
131 CATTCCATGTCTAAGCCCCAGCTGGACC
11250569 GAGGGTTG
1 GAGGGTTG
11250577 TGACAGTAAG
Statistics
Matches: 260, Mismatches: 58, Indels: 14
0.78 0.17 0.04
Matches are distributed among these distances:
157 4 0.02
158 132 0.51
159 120 0.46
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GAGGGTTGCGGCAGTAGGATCAACAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATT
ATGCCTCTCCGATCGACTGAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTT
CATTCCATGTCTAAGCCCCAGCTGGACC
Found at i:11251999 original size:26 final size:26
Alignment explanation
Indices: 11251963--11252041 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
11251953 GTTGGCTTAG
11251963 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
11251989 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
11252015 GCATACGGAGTTCATTCTCA-GTCTAA
1 GCATACGGAGTTCATTC-CATGTCTAA
11252041 G
1 G
11252042 ATTAGATCGG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 48 0.96
27 2 0.04
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:11252593 original size:28 final size:27
Alignment explanation
Indices: 11252561--11252617 Score: 87
Period size: 28 Copynumber: 2.1 Consensus size: 27
11252551 GGGTTGGCTT
*
11252561 AGGCATACGGCGTTCATTCCAATGTCTA
1 AGGCATACGGAGTTCATTCCAA-GTCTA
*
11252589 AGGCATACGGAGTTCATTCCCAGTCTA
1 AGGCATACGGAGTTCATTCCAAGTCTA
11252616 AG
1 AG
11252618 ATTTGAGCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 7 0.26
28 20 0.74
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (27 bp):
AGGCATACGGAGTTCATTCCAAGTCTA
Found at i:11255793 original size:26 final size:26
Alignment explanation
Indices: 11255764--11255816 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11255754 CCGGTTTGAT
11255764 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
11255790 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11255816 C
1 C
11255817 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11256235 original size:356 final size:354
Alignment explanation
Indices: 11255583--11256254 Score: 879
Period size: 356 Copynumber: 1.9 Consensus size: 354
11255573 GGTCCTGCTA
* * * *
11255583 CCACAACCTTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAACCAACCCATG
1 CCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAACCAACACACG
* * * *
11255648 AAACGGGCATGCGGGTGCTCAGCCGACCGGAGAGACAGAATGCGCGAGTCGGAGATCGACCTGGT
66 AAACGGGCATACGGGCGCTCAGCCGA-CGGAGAGACAGAATGCGCAAGCCGGAGATCGACCTGGT
** * * * * *
11255713 CCCCCCTACGTGCTGTCGATCCTACTGTCGCAACCTTCGGTCCGGTTTGATCTTAGACTGGGAAT
130 CCCCCCTACGTGCTACCGATCCTACTCTCGCAACCCTCCGTCCGATCTGATCTTAGACTGGGAAT
* *
11255778 GAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTG
195 GAACTCCGTATACTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTA
* * * * *
11255843 CGAGCGTTTAGCCAGCCGGAGAGGCAGGTCGGAGAGGCATAATGTGCAAGCCGAGGTTTGGCTCG
260 CGAGCGCTCAGCCAGCCGAAAAGGCAGGTCGGAGAGGCATAATGCGCAAGCCGAGGTTTGGCTCG
11255908 ATCCCCATCTGCGTGCTACCGGTCCCCCTG
325 ATCCCCATCTGCGTGCTACCGGTCCCCCTG
* *
11255938 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCTTACGCCTAAGCCAACACAC
1 CCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAA-CCAACACAC
* * ** * * *
11256003 GAAACGGGCGTACGGGCGCTTAGCCAGTA-GGAGAGGTAGAATGCGCAAGCCGGGGATTGGCCTC
65 GAAACGGGCATACGGGCGCTCAGCC-G-ACGGAGAGACAGAATGCGCAAGCCGGAGATCGACCT-
* *
11256067 GGT-CCCCCTACGTGCTACCGATCCTGCTACT-GCAACCCTCCGTCTGATCTGATCTTAGACTGG
127 GGTCCCCCCTACGTGCTACCGATCCTACT-CTCGCAACCCTCCGTCCGATCTGATCTTAGACTGG
* *
11256130 GAATTAACTCGGTATACTTAGACTGGGGATGAACT-TCGTATGCCTAAGTCAACCCACGAAACGA
191 GAATGAACTCCGTATACTTAGACTGGGGATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGA
* * *
11256194 GCGTACGGGCGCTCAGCC-GATCGAAAAAGTC-GGTCGGAGAGGCATAATGCGCAAGCCGAGG
255 GCGTACGAGCGCTCAGCCAG-CCG-AAAAGGCAGGTCGGAGAGGCATAATGCGCAAGCCGAGG
11256255 GATCCTTGTA
Statistics
Matches: 271, Mismatches: 38, Indels: 15
0.84 0.12 0.05
Matches are distributed among these distances:
355 53 0.20
356 208 0.77
357 9 0.03
358 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (354 bp):
CCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAACCAACACACG
AAACGGGCATACGGGCGCTCAGCCGACGGAGAGACAGAATGCGCAAGCCGGAGATCGACCTGGTC
CCCCCTACGTGCTACCGATCCTACTCTCGCAACCCTCCGTCCGATCTGATCTTAGACTGGGAATG
AACTCCGTATACTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTAC
GAGCGCTCAGCCAGCCGAAAAGGCAGGTCGGAGAGGCATAATGCGCAAGCCGAGGTTTGGCTCGA
TCCCCATCTGCGTGCTACCGGTCCCCCTG
Found at i:11261192 original size:26 final size:26
Alignment explanation
Indices: 11261154--11261206 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
11261144 GGCTCAAAAT
11261154 CTTAGACTGGGAATGAACT-CCGTATG
1 CTTAGACTGGGAATGAA-TGCCGTATG
11261180 CTTAGACAT-GGAATGAATGCCGTATG
1 CTTAGAC-TGGGAATGAATGCCGTATG
11261206 C
1 C
11261207 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 23 0.92
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAATGCCGTATG
Found at i:11261758 original size:26 final size:26
Alignment explanation
Indices: 11261729--11261807 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
11261719 CCGGTCTAAT
*
11261729 CTTAGAC-TGGGAATGAATTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
11261755 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCGTATG
11261781 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
11261807 C
1 C
11261808 CTAAGCCAAC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 48 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:11261990 original size:26 final size:26
Alignment explanation
Indices: 11261939--11261991 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11261929 CCAATTTGAT
***
11261939 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11261965 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11261991 C
1 C
11261992 CTATGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11262711 original size:25 final size:25
Alignment explanation
Indices: 11262663--11262713 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 25
11262653 GGCTCAAAAT
11262663 CTTAGACTGGAATGAACTCTGTATG
1 CTTAGACTGGAATGAACTCTGTATG
11262688 CTTAGACATGGAATGAACTC-GTATG
1 CTTAGAC-TGGAATGAACTCTGTATG
11262713 C
1 C
11262714 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCTGTATG
Found at i:11263040 original size:26 final size:26
Alignment explanation
Indices: 11263004--11263055 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11262994 CTGATCTGAT
11263004 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
11263030 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11263056 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11263482 original size:159 final size:156
Alignment explanation
Indices: 11263214--11263716 Score: 519
Period size: 159 Copynumber: 3.2 Consensus size: 156
11263204 CCAGCTGGGG
*
11263214 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGTGCTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCAG
* ** *
11263278 TCGGTCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCTGGTCCCCCCCTGCGTACTGTCGATC
65 CCGAACGGAGAGGC-AAATGCGCAAGCCG-GGATCGACCTGGTCCCCCCCTGCGTGCTGTCGATC
* * *
11263343 TTGCTATCGCAACCCTCAGTCCAGTTTGAT
128 CTGCTGTCGCAACCCTC-GTTCAGTTTGAT
* * * * *
11263373 CTTGGAATGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGTGCTGAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCAGC
* * *
11263438 CAAACGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGAACGGAGAGGCA-AATGCGCAAGCC-GGGATCGACCTGGTCCCCCCCTGCGTGCTGTCGATCC
* * * * * * **
11263503 CGTTGCCACAACCCTCGATTCAGCTAGGG
129 TGCTGTCGCAACCCTCG-TTCAGTTTGAT
* * * * **
11263532 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCAG
* * ** *
11263596 CCGACCGGAGAGGCGAAATGTGCAAGTTGGGGATCGACCTGGT-CCCCCTTGCGTGCTGTCGATC
65 CCGAACGGAGAGGC-AAATGCGCAAG-CCGGGATCGACCTGGTCCCCCCCTGCGTGCTGTCGATC
*
11263660 CTGCTGTCGCAACCCTCGGTTC-GATCTGAT
128 CTGCTGTCGCAACCCTC-GTTCAG-TTTGAT
* * *
11263690 CTTAGACTGGGAAAGAACTCTGTATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
11263717 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 56, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
157 2 0.01
158 61 0.22
159 211 0.76
160 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (156 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCAGC
CGAACGGAGAGGCAAATGCGCAAGCCGGGATCGACCTGGTCCCCCCCTGCGTGCTGTCGATCCTG
CTGTCGCAACCCTCGTTCAGTTTGAT
Found at i:11263719 original size:26 final size:26
Alignment explanation
Indices: 11263690--11263742 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11263680 TCGATCTGAT
11263690 CTTAGACTGGGAAAGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCTGTATG
* *
11263716 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCTGTATG
11263742 C
1 C
11263743 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCTGTATG
Found at i:11264465 original size:26 final size:26
Alignment explanation
Indices: 11264413--11264465 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
11264403 GGCTTAAAAT
** *
11264413 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACAAGGAATGAACTTCGCATG
11264439 CTTAGACAAGGAATGAAC-TCTGCATG
1 CTTAGACAAGGAATGAACTTC-GCATG
11264465 C
1 C
11264466 CTAAGCCTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTTCGCATG
Found at i:11264931 original size:26 final size:26
Alignment explanation
Indices: 11264895--11264947 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11264885 CTGATTTGAT
11264895 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
11264921 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11264947 C
1 C
11264948 CTAAGCTCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11265366 original size:26 final size:26
Alignment explanation
Indices: 11265330--11265382 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11265320 CCGGTCCGAT
11265330 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
11265356 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11265382 C
1 C
11265383 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11265860 original size:26 final size:26
Alignment explanation
Indices: 11265831--11265883 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11265821 CCGATCTGAT
11265831 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
11265857 CTTAGATTGGGGATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11265883 C
1 C
11265884 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11266877 original size:158 final size:157
Alignment explanation
Indices: 11266420--11266920 Score: 410
Period size: 158 Copynumber: 3.2 Consensus size: 157
11266410 AACTCCATAT
* * *
11266420 GCTTAGACATGGAATGAATTCCGTATGCCTAAGCTAACCCATGAAACGA-GTGTACGGGCGTTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGACGTG--CGGGCGCTCA
* * * * * * * *
11266484 GCTGGCTGGACAAGTAGAATGCA-TAGTCGGGGAC-CAGCCCGAT-CCCTCTTGCGTGTTGTCGA
64 GCAGGCTGGAGAGGCAAAATGCACAAGTCGGGG-CTCGGCCCGATCCCCTC-TGCGTGCTGTCGA
* * * *
11266546 TCCTGCTACCGCAACCCTTGGTCCAATCTGA
127 TCCTACTGCCGCAACCCTCGGTCCAAGCTGA
* * * ** *
11266577 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACT-AAACGAGCGTTCGATCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA-TGAAACGA-CGTGCGGGCGCTC
* * * * * * * *
11266640 AGCAGGCTAGAGAGGCATAATGCGCAAGTCGGGGATCGGCTCGATCCCCTTTGCATGCTGT-TAG
63 AGCAGGCTGGAGAGGCAAAATGCACAAGTCGGGGCTCGGCCCGATCCCCTCTGCGTGCTGTCGA-
* * *
11266704 TCCCACTGCCACAACCCTCGGTCC-AGCTAGG
127 TCCTACTGCCGCAACCCTCGGTCCAAGCT-GA
*
11266735 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-GACGTGCGGGCGCTCAG
* * * * *
11266800 TC-GACCGGAGAGGCAAAATACACAAGCCGGGGCTCGGCCCGATCCCCTCTGCGTGCTATCGATC
65 -CAGGCTGGAGAGGCAAAATGCACAAGTCGGGGCTCGGCCCGATCCCCTCTGCGTGCTGTCGATC
* * ** * *
11266864 CTACTGTCGCAACCCTCAGTCTGATCCGA
129 CTACTGCCGCAACCCTCGGTCCAAGCTGA
* *
11266893 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
11266921 TTAGACTGAG
Statistics
Matches: 266, Mismatches: 62, Indels: 31
0.74 0.17 0.09
Matches are distributed among these distances:
156 1 0.00
157 69 0.26
158 183 0.69
159 13 0.05
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.22
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGACGTGCGGGCGCTCAGC
AGGCTGGAGAGGCAAAATGCACAAGTCGGGGCTCGGCCCGATCCCCTCTGCGTGCTGTCGATCCT
ACTGCCGCAACCCTCGGTCCAAGCTGA
Found at i:11266945 original size:26 final size:26
Alignment explanation
Indices: 11266894--11266946 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
11266884 CTGATCCGAT
**
11266894 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11266920 CTTAGACTGAGG-GTGAACTCCATATG
1 CTTAGACTG-GGAATGAACTCCATATG
11266946 C
1 C
11266947 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11267249 original size:26 final size:26
Alignment explanation
Indices: 11267220--11267271 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11267210 CCGGTTTGAT
11267220 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
11267246 CTTAGACATGGAATGAGCTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
11267272 GGTAAGCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:11267600 original size:159 final size:158
Alignment explanation
Indices: 11267245--11267625 Score: 392
Period size: 158 Copynumber: 2.4 Consensus size: 158
11267235 AACTCCGTAT
* ** * * *
11267245 GCTTAGACATGGAATGAGCTCCGTATGGGTAAGCTAACCCACGAAACGAGCGTGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGTGGGCGCTCAA
* * *
11267310 CCTACCGAAGAGGCAGAATACATAAGCCGGGGATTGGCCCGGTCCCCCCTACGTGCTGTCGATCC
66 CCTACCGAAGAGGCAGAATACACAAGCCGGGGATTGGCCCGATCCCCCCTACGTGCTGACGATCC
* * * * *
11267375 TGCTATCGCAACCCTCGGTCTGGTCTGA
131 CGCTACCACAACCCTCAGTCCGGTCTGA
* * * * *
11267403 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGTGGGTGCT-G
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGTGGGCGCTCA
* * * * * *
11267466 AGCTGGCCGGAGAGGCATAATGCACAAGCCGGGGATTGGCCTGATCCCCCTCTACGTGCT-ACAG
65 ACCT-ACCGAAGAGGCAGAATACACAAGCCGGGGATTGGCCCGATCCCCC-CTACGTGCTGAC-G
* * *
11267530 GTCCCGCTGCCACAACCCTCAGTCCGGT-TGGG
127 ATCCCGCTACCACAACCCTCAGTCCGGTCT-GA
* * * * *
11267562 GCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACAAAATGGGTGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGTGGGCGCTCA
11267626 GCAGGTCAGA
Statistics
Matches: 178, Mismatches: 38, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
157 4 0.02
158 90 0.51
159 83 0.47
160 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGTGGGCGCTCAA
CCTACCGAAGAGGCAGAATACACAAGCCGGGGATTGGCCCGATCCCCCCTACGTGCTGACGATCC
CGCTACCACAACCCTCAGTCCGGTCTGA
Done.