Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 68 of 402
Found at i:11267750 original size:26 final size:26
Alignment explanation
Indices: 11267721--11267773 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11267711 CCGGTCTAAT
*
11267721 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
11267747 CTTAAACTGGGGATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
11267773 C
1 C
11267774 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:11268834 original size:26 final size:27
Alignment explanation
Indices: 11268805--11268862 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
11268795 CCGGTTCGAT
*
11268805 CTTAAGACTA-GAATGAAC-TCTGTATG
1 CTTAAGACAAGGAATGAACTTC-GTATG
11268831 CTT-AGACAAGGAATGAACTTCGTATG
1 CTTAAGACAAGGAATGAACTTCGTATG
*
11268857 CCTAAG
1 CTTAAG
11268863 CCAACCCATG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
25 5 0.19
26 18 0.67
27 4 0.15
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (27 bp):
CTTAAGACAAGGAATGAACTTCGTATG
Found at i:11269334 original size:26 final size:26
Alignment explanation
Indices: 11269305--11269357 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11269295 CTGATCCGAT
*
11269305 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11269331 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11269357 C
1 C
11269358 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11270229 original size:26 final size:26
Alignment explanation
Indices: 11270178--11270230 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11270168 CCGGTCTGAT
*
11270178 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTACATATG
* *
11270204 CTTAGACTGGGGATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACATATG
11270230 C
1 C
11270231 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:11271059 original size:26 final size:26
Alignment explanation
Indices: 11271030--11271081 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11271020 CCGGTCTGAT
11271030 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
11271056 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
11271082 TATAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:11271583 original size:26 final size:26
Alignment explanation
Indices: 11271531--11271583 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
11271521 TTGATCCGAT
*
11271531 CTTAGACTGGGAATGAACTCGGCATG
1 CTTAGACTGGGAATGAACTCGACATG
* *
11271557 CTTAGACTAGGG-ATGTACTCGATATG
1 CTTAGACT-GGGAATGAACTCGACATG
11271583 C
1 C
11271584 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCGACATG
Found at i:11271988 original size:26 final size:26
Alignment explanation
Indices: 11271950--11272002 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11271940 GGCTCAAACT
11271950 CTTAGACTGGGAATGAAATCCATATG
1 CTTAGACTGGGAATGAAATCCATATG
* *
11271976 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAAATCCATATG
11272002 C
1 C
11272003 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:11272323 original size:26 final size:26
Alignment explanation
Indices: 11272294--11272346 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11272284 CCGGTTCGAT
11272294 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
*
11272320 CTTAGACTGAGGATTAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
11272346 C
1 C
11272347 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:11272486 original size:184 final size:184
Alignment explanation
Indices: 11272204--11272555 Score: 481
Period size: 184 Copynumber: 1.9 Consensus size: 184
11272194 GCTTAGCCAA
* * * * ** * *
11272204 CCGGAGAGCTAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTTACATGCTGTCGATCCTGTT
1 CCGGAGAGCTACAATGCACAAGCCAGGGATCGGCCCAATCCCCCCTACATGCTGTCGATCCTGCT
* ** * * *
11272269 GCCGTAACCTTTGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGGAT
66 ACCACAACCCTTGGTCCGGTTCGATCATAGACTGGGAATGAACTCCGTATGCTTAGAATGAGGAT
* *
11272334 TAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGAGCGTTGAGTCGG
131 GAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTTCGAGCGTTGAGTCGG
* * *
11272388 CCGGAGAGGTACAATGCACAAGCCAGGGATCGGCCCAATCCCCCCTACGTGCTGTCGATCTTGCT
1 CCGGAGAGCTACAATGCACAAGCCAGGGATCGGCCCAATCCCCCCTACATGCTGTCGATCCTGCT
* * *
11272453 ATCACAACCCTTGGTTCGG-TCTGATCATAGACTGGGAATGAACTCCGTATGCTTAGAATGGGGA
66 ACCACAACCCTTGGTCCGGTTC-GATCATAGACTGGGAATGAACTCCGTATGCTTAGAATGAGGA
*
11272517 TGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGT
130 TGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGT
11272556 ACGGGTGCTC
Statistics
Matches: 144, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
183 2 0.01
184 142 0.99
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (184 bp):
CCGGAGAGCTACAATGCACAAGCCAGGGATCGGCCCAATCCCCCCTACATGCTGTCGATCCTGCT
ACCACAACCCTTGGTCCGGTTCGATCATAGACTGGGAATGAACTCCGTATGCTTAGAATGAGGAT
GAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTTCGAGCGTTGAGTCGG
Found at i:11272519 original size:26 final size:26
Alignment explanation
Indices: 11272480--11272530 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11272470 GGTCTGATCA
*
11272480 TAGACTGGGAATGAACTCCGTATGCT
1 TAGAATGGGAATGAACTCCGTATGCT
*
11272506 TAGAATGGGGATGAACTCCGTATGC
1 TAGAATGGGAATGAACTCCGTATGC
11272531 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGAATGGGAATGAACTCCGTATGCT
Found at i:11274194 original size:165 final size:164
Alignment explanation
Indices: 11273916--11274269 Score: 418
Period size: 165 Copynumber: 2.2 Consensus size: 164
11273906 AACTCCGTAT
** *
11273916 GCATAGACATGGAATGAA--CCC--TG-TATGCCTAAGCCAACCCACGGAACGAGCGTACGGGCG
1 GCATAGACATGGAATGAACTCCCTATGCTATGCCTAAGCCAACCCACAAAAAGAGCGTACGGGCG
* * * * *
11273976 CTCAACCGGTCGGAGAGGCAGAATGTGTAAGCCGAGGATCAGCCCGGTCCCCCTCTACATGCTGT
66 CTCAACCAGTCGGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCCTCCACATGCTGC
* **
11274041 C-GATCCCGCTGCCACAACCCTCGGTCC-AGCTGGG
131 CAG-TCCCACTGCCACAACCCTCGAACCGA-CTGGG
*
11274075 GCATAGACATGGAATGAACTCCCTATGCCTATGCCTAAGTCAACCCACAAAAAGAGCGTACGGGC
1 GCATAGACATGGAATGAACTCCCTATG-CTATGCCTAAGCCAACCCACAAAAAGAGCGTACGGGC
* * * * * * **
11274140 GCTGAGCTAGTCGGAGAGGCATAGTGCGTAAGCCGAGGATC-GACCTGATCCCCCTCCATGTGCT
65 GCTCAACCAGTCGGAGAGGCAGAATGCGTAAGCCGAGGATCAG-CCCGATCCCCCTCCACATGCT
11274204 GCCAGTCCCACTGCCACAACCCTCGAACCGACTGGG
129 GCCAGTCCCACTGCCACAACCCTCGAACCGACTGGG
* *
11274240 GCTTAGACATGAAATGAACTCCCTATGCTA
1 GCATAGACATGGAATGAACTCCCTATGCTA
11274270 AGCCAACCCA
Statistics
Matches: 164, Mismatches: 22, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
159 18 0.11
161 3 0.02
163 2 0.01
164 4 0.02
165 135 0.82
166 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.17
Consensus pattern (164 bp):
GCATAGACATGGAATGAACTCCCTATGCTATGCCTAAGCCAACCCACAAAAAGAGCGTACGGGCG
CTCAACCAGTCGGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCCTCCACATGCTGC
CAGTCCCACTGCCACAACCCTCGAACCGACTGGG
Found at i:11274670 original size:26 final size:26
Alignment explanation
Indices: 11274634--11274686 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11274624 CCAGTTCAGT
*
11274634 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11274660 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11274686 C
1 C
11274687 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11275212 original size:159 final size:159
Alignment explanation
Indices: 11274867--11275750 Score: 602
Period size: 159 Copynumber: 5.4 Consensus size: 159
11274857 AACTCCGTAT
** * *
11274867 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGCGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGTGCTCAG
* * * * * * ** * * * * *
11274932 CC-GATCGAAGAGGCAGAATGCACAAAGCAG-GGACCAGCCCAGT-CCTCTCCTGCGTGCTGTCA
66 CCAG-CCGGAGAGGCATAATGCGC-AAGCCGAGGATCAGCCTGGTCCCCCT-CTGCATGATATCG
** * * ** * ** *
11274994 ATCCTGCTACCGCAATACTCAGTCCGGTCT-GA
128 ATCCCACTGCCACAACCCTCGGTCC-AACTGGG
* * * * *
11275026 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTTCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGTGCTCA
* * *
11275090 GCCAGCCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCTGGTCCCCCTCTGCATGATATTGGT
65 GCCAGCCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCTGGTCCCCCTCTGCATGATATCGAT
11275155 CCCACTGCCACAACCCTCGGTCCAACTGGG
130 CCCACTGCCACAACCCTCGGTCCAACTGGG
* * *
11275185 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGT-GGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT-TCGGGTGCTCA
* * *
11275249 GCCAATCAGAGATGCTGGTCGGAGAGGCATAATGCGTAAGTCGGGGATCAG-CTCGGTCCCCCTC
65 G-C---C----A-GC----CGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCT-GGTCCCCCTC
** * **
11275313 TACGGGTTGCCGATCCCACTGCTGGTCCTGCTGCCACAACCCTCGGTCCAACTGGG
116 T---GCAT---GAT---A-T-C-GATCCCACTGCCACAACCCTCGGTCCAACTGGG
* * *
11275369 ACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGTGCTCAG
** * * * * * *
11275434 CCAATCGGAGAGGCAGAATGTGCAAGCC-AGGGACCAACCTGGT-CCCCTCCTGCGTGCTATCGA
66 CCAGCCGGAGAGGCATAATGCGCAAGCCGA-GGATCAGCCTGGTCCCCCT-CTGCATGATATCGA
* ** * * * * * * *
11275497 TCCTACTATCGCAACACTTGATCCTA-TCCGA
129 TCCCACTGCCACAACCCTCGGTCCAACT-GGG
* ** * * *
11275528 TCTTAGATTTGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGTGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGTGCTCAG
* * ** * * * *
11275593 CCAGTCGGAGAGGCATAATGGGCAAATCGGGGATCGGCCCGGTCCCCCTCTGCATGATGTCGATC
66 CCAGCCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCTGGTCCCCCTCTGCATGATATCGATC
* *
11275658 CCGCTGCCACAACCCTCGGTCCATCTGGG
131 CCACTGCCACAACCCTCGGTCCAACTGGG
* *
11275687 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGT-GGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT-TCGGGTGCTCA
11275751 ACCGGCTGGA
Statistics
Matches: 561, Mismatches: 122, Indels: 84
0.73 0.16 0.11
Matches are distributed among these distances:
158 9 0.02
159 350 0.62
160 16 0.03
161 1 0.00
162 1 0.00
163 1 0.00
165 2 0.00
167 1 0.00
168 4 0.01
170 5 0.01
171 31 0.06
172 41 0.07
175 2 0.00
176 1 0.00
178 3 0.01
180 1 0.00
181 1 0.00
182 1 0.00
183 1 0.00
184 89 0.16
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGTGCTCAG
CCAGCCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCTGGTCCCCCTCTGCATGATATCGATC
CCACTGCCACAACCCTCGGTCCAACTGGG
Found at i:11275831 original size:502 final size:502
Alignment explanation
Indices: 11274868--11275962 Score: 1577
Period size: 502 Copynumber: 2.2 Consensus size: 502
11274858 ACTCCGTATG
* *
11274868 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGCGGGGGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGC
* * * * *
11274933 CGATCGAAGAGGCAGAATGCACAAAG-CAGGGACCAGCCCAGTCCTCTCCTGCGTGCTGTCAATC
66 CGATCGGAGAGGCAGAATGCGC-AAGCCAGGGACCAACCCAGTCCCCTCCTGCGTGCTATCAATC
* * * *
11274997 CTGCTACCGCAATACTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
130 CTACTACCGCAACACTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* *
11275062 ACCCACAAAATGAGCGTTCGGGTGCTGAGCCAGCCGGAGAGGCATAATGCGCAAGCCGAGGATCG
195 ACCCACAAAACGAGCGTTCGGGTGCTGAGCCAGCCGGAGAGGCATAATGCGCAAACCGAGGATCG
* * *
11275127 GCCTGGTCCCCCTCTGCATGATATTGGTCCCACTGCCACAACCCTCGGTCCAACTGGGGCTTAGA
260 GCCCGGTCCCCCTCTGCATGATATCGATCCCACTGCCACAACCCTCGGTCCAACTGGGGCTTAGA
* *
11275192 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGTGCTCAGCCAATCA
325 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCAACCAATCA
* * * * *
11275257 GAGATGCTGGTCGGAGAGGCATAATGCGTAAGTCGGGGATCAGCTCGGTCCCCCTCTACGGGTTG
390 GAGATGCTGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCTCGGACCCCCTCTACGGGCTG
*
11275322 CCGATCCCACTGCTGGTCCTGCTGCCACAACCCTCGGTCCAACTGGGA
455 CCGATCCCACTGCTGGTCCTGCTACCACAACCCTCGGTCCAACTGGGA
*
11275370 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGC
* * ** *
11275435 CAATCGGAGAGGCAGAATGTGCAAGCCAGGGACCAACCTGGTCCCCTCCTGCGTGCTATCGATCC
66 CGATCGGAGAGGCAGAATGCGCAAGCCAGGGACCAACCCAGTCCCCTCCTGCGTGCTATCAATCC
* * * * * *
11275500 TACTATCGCAACACT-TGATCCTATCCGATCTTAGATTTGGAATGAACTCTGTATGCCTAAGTCA
131 TACTACCGCAACACTCAG-TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * *
11275564 ACCCACGAAACGAGCGTTCGGGTGCTGAGCCAGTCGGAGAGGCATAATGGGCAAATCGGGGATCG
195 ACCCACAAAACGAGCGTTCGGGTGCTGAGCCAGCCGGAGAGGCATAATGCGCAAACCGAGGATCG
* * *
11275629 GCCCGGTCCCCCTCTGCATGATGTCGATCCCGCTGCCACAACCCTCGGTCCATCTGGGGCTTAGA
260 GCCCGGTCCCCCTCTGCATGATATCGATCCCACTGCCACAACCCTCGGTCCAACTGGGGCTTAGA
**
11275694 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCAACC-GGCT
325 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCAACCAATC-
* * *
11275758 GGAGATGCTGGCCGGAGAGGCATAATGTGCAAGCCGGGGATCAGCTC-GACCCCCTTCTGCGGGC
389 AGAGATGCTGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCTCGGACCCCC-TCTACGGGC
* * * *
11275822 TGTCGATCCCGCTGCTGGTCCTGCTACCACAACCCTCGGTCCGACTGGGG
453 TGCCGATCCCACTGCTGGTCCTGCTACCACAACCCTCGGTCCAACTGGGA
* * * * *
11275872 CTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGC
* * *
11275937 CGACCGGAGAGGCAAAATGGGCAAGC
66 CGATCGGAGAGGCAGAATGCGCAAGC
11275963 TGGGGATCGG
Statistics
Matches: 527, Mismatches: 62, Indels: 8
0.88 0.10 0.01
Matches are distributed among these distances:
501 11 0.02
502 516 0.98
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (502 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGCAAGCCAGGGACCAACCCAGTCCCCTCCTGCGTGCTATCAATCC
TACTACCGCAACACTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACAAAACGAGCGTTCGGGTGCTGAGCCAGCCGGAGAGGCATAATGCGCAAACCGAGGATCGG
CCCGGTCCCCCTCTGCATGATATCGATCCCACTGCCACAACCCTCGGTCCAACTGGGGCTTAGAC
ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCAACCAATCAG
AGATGCTGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCTCGGACCCCCTCTACGGGCTGC
CGATCCCACTGCTGGTCCTGCTACCACAACCCTCGGTCCAACTGGGA
Found at i:11276458 original size:159 final size:159
Alignment explanation
Indices: 11276068--11276461 Score: 362
Period size: 159 Copynumber: 2.5 Consensus size: 159
11276058 AACTCTGTAT
* * * * *
11276068 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGTGCATGCGGGCTCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCATGTGGGCACTCAG
* * * ** *
11276133 CCGATCGAAGAGGTAGAATGCACAAGCCAGGGACCAGCTCGGTCCCCCCCTGTGTGCTGTCGATC
66 CCGGTCGGAGAGGCAGAATGCACAAGCCAGGGACCAGCTCGGTCCCCCCCTGCATGATGTCGATC
* *** *
11276198 TTGCTACTGTAACCCTCGGTTCGATCCAA
131 CTGCTACCACAACCCTCGGTCCGATCCAA
** ** * * * ** *
11276227 TTTTAGAC-TGGAAATGAACTCCGTATGCCTAAGTTAACCCACAAAAAGAGCGTTTGGGTGCTGA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCATGTGGGCACTCA
* * ** * * * *
11276291 GCCAGTCGGAGAGGCATAATGTGCAAGCCAGGGATC-GGTCTGGTCCCCCTCTGCATGATGTCGG
65 GCCGGTCGGAGAGGCAGAATGCACAAGCCAGGGACCAGCTC-GGTCCCCCCCTGCATGATGTCGA
* ***
11276355 TCCTGCTACCACAACCCTCGGTCC-AGCTGGG
129 TCCTGCTACCACAACCCTCGGTCCGATC-CAA
* * * *
11276386 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCATGTGGGCACTCAG
11276451 CCGGTCGGAGA
66 CCGGTCGGAGA
11276462 TGCTGGCCGG
Statistics
Matches: 179, Mismatches: 52, Indels: 8
0.75 0.22 0.03
Matches are distributed among these distances:
158 8 0.04
159 168 0.94
160 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCATGTGGGCACTCAG
CCGGTCGGAGAGGCAGAATGCACAAGCCAGGGACCAGCTCGGTCCCCCCCTGCATGATGTCGATC
CTGCTACCACAACCCTCGGTCCGATCCAA
Found at i:11276688 original size:699 final size:695
Alignment explanation
Indices: 11275370--11277158 Score: 2442
Period size: 699 Copynumber: 2.6 Consensus size: 695
11275360 CCAACTGGGA
*
11275370 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGG-TGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCT-CTCAG
* * ** * * * *
11275434 CCAATCGGAGAGGCAGAATGTGCAAGCCAGGGACCAACCTGGTCCCCTCCTGCGTGCTATCGATC
65 CCGATCGGAGAGGTAGAATGCACAAGCCAGGGACCAGCCTGGTCCCCCCCTGTGTGCTGTCGATC
* * * * * * * * *
11275499 CTACTA-TCGCAACACTTGATCCTATCCGATCTTAGATTTGGAATGAACTCTGTATGCCTAAGTC
130 TTGCTACT-GCAACCCTCGGTTCGATCCGATCTTAGA-CTGGAATGAACTCCGTATGCCTAAGTC
* ** *
11275563 AACCCACGAAACGAGCGTTCGGGTGCTGAGCCAGTCGGAGAGGCATAATGGGCAAATCGGGGATC
193 AACCCACGAAACGAGCGTTCGGGTGCTGAGCCAGTCGGAGAGGCATAATGCGCAAGCCAGGGATC
* *
11275628 GGCCCGGTCCCCCTCTGCATGATGTCGATCCCGCTGCCACAACCCTCGGTCCATCTGGGGCTTAG
258 GG--CGGTCCCCCTCTGCATGATGTCGGTCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAG
* ** *
11275693 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCAACCGGCT
321 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGCACTCAGCCGGC-
** *
11275758 GGAGATGCTGGCCGGAGAGGCATAATGTGCAAGCCGGGGATCAGCTCGACCCCCTTCTGCGGGCT
385 GGAGATGCTGGCCGGAGAGGCATAATACGCAAGCCGAGGATCAGCTCGACCCCCTTCTGCGGGCT
* *
11275823 GTCGATCCCGCTGCTGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATTA
450 GTCGATCCCACTGCTGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGA
*
11275888 ACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAAA
515 ACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAAA
** * * * *
11275953 ATGGGCAAGCTGGGGATCGGCTCGATCCCCCACTGCATGCTACCGATCCTGCTGCTGGTCTTGCT
580 ATACGCAAGCTGGGGATCGACTCGATCCCCCACTGCATGCTACCGATCCTGCTACTGATCCTGCT
**
11276018 GTCGTAACCCTCGGTCTGGTCCGATCTTAGATTAGGAATGAACTCTGTATG
645 GTCGTAACCCTCGGTCCAGTCCGATCTTAGATTAGGAATGAACTCTGTATG
* * *
11276069 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGTGCATGCGGGCTCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTCTCAGC
*
11276134 CGATCGAAGAGGTAGAATGCACAAGCCAGGGACCAG-CTCGGTCCCCCCCTGTGTGCTGTCGATC
66 CGATCGGAGAGGTAGAATGCACAAGCCAGGGACCAGCCT-GGTCCCCCCCTGTGTGCTGTCGATC
* * * *
11276198 TTGCTACTGTAACCCTCGGTTCGATCCAATTTTAGACTGGAAATGAACTCCGTATGCCTAAGTTA
130 TTGCTACTGCAACCCTCGGTTCGATCCGATCTTAGACTGG-AATGAACTCCGTATGCCTAAGTCA
* * * *
11276263 ACCCACAAAAAGAGCGTTTGGGTGCTGAGCCAGTCGGAGAGGCATAATGTGCAAGCCAGGGATCG
194 ACCCACGAAACGAGCGTTCGGGTGCTGAGCCAGTCGGAGAGGCATAATGCGCAAGCCAGGGATCG
* *
11276328 GTCTGGTCCCCCTCTGCATGATGTCGGTCCTGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGA
259 G-C-GGTCCCCCTCTGCATGATGTCGGTCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGA
* *
11276393 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGTGGGCACTCAGCCGGTCG
322 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGCACTCAGCCGG-CG
* * *
11276458 GAGATGCTGGCCGGAGAGGCATAATACGCAAGTCGAGGATTAGCTCGGTCCCCC-TCTGCGGGCT
386 GAGATGCTGGCCGGAGAGGCATAATACGCAAGCCGAGGATCAGCTC-GACCCCCTTCTGCGGGCT
* * *
11276522 GTCGATCCCACTGCTGGTCCTGCTGCCACAACCTTCGGTCTGACTGGGGCTTAGACATGGAATGA
450 GTCGATCCCACTGCTGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGA
* * * *
11276587 ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGATCGGAGAGGCAGA
515 ACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAAA
* * *
11276652 ATACGCAAGCTGGGGATCGACTCGGTCCCTCACTGCATGCTATCGATCCTGCTACTGATCCTGCT
580 ATACGCAAGCTGGGGATCGACTCGATCCCCCACTGCATGCTACCGATCCTGCTACTGATCCTGCT
*
11276717 GTCGTAACCCTCGGTCCAGTCCGATCTTAGATTGGGAATGAACTCTGTATG
645 GTCGTAACCCTCGGTCCAGTCCGATCTTAGATTAGGAATGAACTCTGTATG
* * * * *
11276768 CTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGAGTGTGTGGGCTCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTCTCAGC
* * *
11276833 CGACCGGAGAGGTAGAATGCACAAGCCGGGGACCGGCCTGGTCCCCCCCTGTGTGCTGTCGATCT
66 CGATCGGAGAGGTAGAATGCACAAGCCAGGGACCAGCCTGGTCCCCCCCTGTGTGCTGTCGATCT
* * * *
11276898 TGCTACCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACTGCAACCCTCGGTTCGATCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * ** ** *
11276963 CCCATGAAACGAGCGTGCGGGCGCTGAACC-GACCGGAGGGGTGTAACACGCAAGCTAGGGATCG
195 CCCACGAAACGAGCGTTCGGGTGCTGAGCCAG-TCGGAGAGGCATAATGCGCAAGCCAGGGATCG
* * **
11277027 GCGCGAT--CCCTCTGCATGCTGCCGGTCCCGCTGCCACAACCCTCAATCC-GACTGGGGCTTAG
259 GCG-G-TCCCCCTCTGCATGATGTCGGTCCCGCTGCCACAACCCTCGGTCCAG-CTGGGGCTTAG
* * *
11277089 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGTCGGCC
321 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGCACTCAGCCGG-C
11277154 GGAGA
385 GGAGA
11277159 GGCAGAATGT
Statistics
Matches: 958, Mismatches: 119, Indels: 28
0.87 0.11 0.03
Matches are distributed among these distances:
696 1 0.00
697 112 0.12
698 9 0.01
699 823 0.86
700 13 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (695 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTCTCAGC
CGATCGGAGAGGTAGAATGCACAAGCCAGGGACCAGCCTGGTCCCCCCCTGTGTGCTGTCGATCT
TGCTACTGCAACCCTCGGTTCGATCCGATCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTTCGGGTGCTGAGCCAGTCGGAGAGGCATAATGCGCAAGCCAGGGATCGGC
GGTCCCCCTCTGCATGATGTCGGTCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATG
GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGCACTCAGCCGGCGGAGAT
GCTGGCCGGAGAGGCATAATACGCAAGCCGAGGATCAGCTCGACCCCCTTCTGCGGGCTGTCGAT
CCCACTGCTGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCG
TATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAAAATACGC
AAGCTGGGGATCGACTCGATCCCCCACTGCATGCTACCGATCCTGCTACTGATCCTGCTGTCGTA
ACCCTCGGTCCAGTCCGATCTTAGATTAGGAATGAACTCTGTATG
Found at i:11277271 original size:26 final size:26
Alignment explanation
Indices: 11277242--11277294 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11277232 CCGGTCTGAT
*
11277242 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
11277268 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
11277294 C
1 C
11277295 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:11278030 original size:26 final size:26
Alignment explanation
Indices: 11277979--11278031 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11277969 GGCTCAAAAT
*
11277979 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
11278005 CTTAGAC-ATGGAATGAACTCTATATG
1 CTTAGACTA-GGAATGAACTCCATATG
11278031 C
1 C
11278032 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:11279388 original size:26 final size:26
Alignment explanation
Indices: 11279350--11279402 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11279340 ACGGTTCGAT
11279350 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11279376 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
11279402 C
1 C
11279403 AAAAGTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11279728 original size:26 final size:26
Alignment explanation
Indices: 11279692--11279743 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
11279682 TCCGGTCCGA
11279692 TCTTAGACTGGGAATGAACTTCGTAT
1 TCTTAGACTGGGAATGAACTTCGTAT
*
11279718 TCTTAGACTGGGGATGAACTTCGTAT
1 TCTTAGACTGGGAATGAACTTCGTAT
11279744 GCCTAAGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTTCGTAT
Found at i:11280710 original size:26 final size:26
Alignment explanation
Indices: 11280672--11280724 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11280662 TCGGTCTGAT
*
11280672 CTTAGACTAGGAATGAACTCCTTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11280698 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
11280724 C
1 C
11280725 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11282258 original size:26 final size:26
Alignment explanation
Indices: 11282229--11282281 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11282219 TTGGTCTGAT
*
11282229 CTTAAAC-TGGGAATGAACTCTGTATG
1 CTTAAACAT-GGAATGAACTCCGTATG
*
11282255 CTTAGACATGGAATGAACTCCGTATG
1 CTTAAACATGGAATGAACTCCGTATG
11282281 C
1 C
11282282 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACATGGAATGAACTCCGTATG
Found at i:11282732 original size:157 final size:157
Alignment explanation
Indices: 11282255--11282754 Score: 438
Period size: 158 Copynumber: 3.2 Consensus size: 157
11282245 ACTCTGTATG
* *
11282255 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATACGGGCGCTCAA
1 CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTC-A
* * * * ** * *
11282319 CCGGCCGTAGAGGCAGAATGTGCAAGTCGGGGATCAAC-CTGGTCCCCCCTGCGTGCTATCAACC
65 GCAGCCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCTC-GGTCCCCCCTGCGTGCTGTCAATC
* * * *
11282383 CTGTTGCCACAACCCTCAGTCTGGTCTGAT
129 CTGCTGCCACAACCCTCGGTC-CGTCCGAT
* * * * * * * * *
11282413 CTCAGA-TTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGTGTTCGGGCGTTGAG
1 CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * * **
11282477 CTAACCGGAGAGGCATAATACGCAAGTCGGGGATCGGCTCAGTCCCCCTATGCGTGCTGTCGGTC
66 C-AGCCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCCC-CTGCGTGCTGTCAATC
* * * * **
11282542 CCGCTGCCACAACCCTCGAT-CGGCTGGGG
129 CTGCTGCCACAACCCTCGGTCCGTC-CGAT
* * *
11282571 CTTAGACAT-GG-ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * ** * * *
11282634 TCAGTCGAAAAACCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCCATCC
66 -CAGCCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCAATCC
*
11282699 TGCTGTCACAACCCTCGGTCCAGTCCGAT
130 TGCTGCCACAACCCTCGGTCC-GTCCGAT
*
11282728 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACATGGGAATGAACTCCGTATGC
11282755 TTAGACTGGG
Statistics
Matches: 263, Mismatches: 68, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
156 30 0.11
157 95 0.36
158 109 0.41
159 29 0.11
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CAGCCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCAATCCT
GCTGCCACAACCCTCGGTCCGTCCGAT
Found at i:11282757 original size:26 final size:26
Alignment explanation
Indices: 11282728--11282780 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11282718 CCAGTCCGAT
*
11282728 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
11282754 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
11282780 C
1 C
11282781 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:11287037 original size:25 final size:26
Alignment explanation
Indices: 11287000--11287049 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
11286990 GTTGACTTAG
11287000 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
11287026 GCATAC-GAGTTCATTCCCAATCTA
1 GCATACAGAGTTCATCCCCAATCTA
11287050 CGATCAGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.32, C:0.30, G:0.12, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:11287541 original size:26 final size:26
Alignment explanation
Indices: 11287512--11287564 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11287502 GATGACTTAG
11287512 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
11287538 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11287564 G
1 G
11287565 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11287834 original size:513 final size:512
Alignment explanation
Indices: 11286809--11287881 Score: 1248
Period size: 513 Copynumber: 2.1 Consensus size: 512
11286799 GCCCACATGC
*
11286809 TCATTTCGTGGCTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAACGAGGGG
1 TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAACGAGGGG
* * * *
11286874 TTGTGGCAGCATGACCAGCAGCGGGATCGACTACACGCATAGGGGGACCGGGCTGATCCCCGACT
66 TTGCGACAGCAGGACCAGCAGCGGGATCGACTACACGCAGAGGGGGACCGGGCTGATCCCCGACT
*** * * ** *
11286939 TGTGCATTATGCCTCTCCGATTGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
131 TACACATTATGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGATGACTTAGGCAT
* *
11287004 ACAGAGTTCATCCCCAATCTAAGCATACGAGTTCATTCCCAATCTACGATCAGACCGGACCGAGG
196 ACAGAGTTCATCCCCAATCTAAGCATACGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAAG
* ** ** * * * * *
11287069 GTTATGGTAGCAGGATCGGTAGCATGCAGGAGGGATCGGGCCGATCCCCGGCTTGCTCATTCTAC
261 GTTACGACAGCAGGATCGACAACACGCAGGAGGGACCGGGCCAATCCCCGGCTTGCACATTCTAC
* * **
11287134 CTCTCTGACCGACTGAGCACCCACACACTCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATT
326 CTCTCCGACCGACTGAGCACCCACACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT
* *
11287199 CCATGTCTAAGCCCCAGCTAGACCGAGGGTTGCAGCAGCAGGACTGACAGTACGAAGAGAGGGAC
391 CCATGTCTAAGCCCCAGCTAGACCAAGGGTTGCAGCAGCAGGACTGACAGCACGAAGAGAGGGAC
* * *
11287264 CGGGCCGATAGCCGGCTTGCGCATTATGCCTCTTTGGCCGACTCAATGCCCGCACGT
456 CGGGCCGATACCCGGCTTGCGCATTATGCCTCTTCGGCCGACTCAACGCCCGCACGT
* * * * *
11287321 TCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATG-GTAAGCCCCAGCCGGATCGA-G
1 TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC--AACGAGG
* * * *
11287384 GGTTGCGATAGCAGGACC-GACAGCGGGATCGGC-AGCACGCAGAGGGGGACTGGGCTGATCCCT
64 GGTTGCGACAGCAGGACCAG-CAGCGGGATCGACTA-CACGCAGAGGGGGACCGGGCTGATCCCC
* * * *
11287447 GGCTTACACATTATGCCTCTCCGGTCGGCTGAGCACCCGTACGCTCGTTTTGTGGGATGACTTAG
127 GACTTACACATTATGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGATGACTTAG
* * * **
11287512 GCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGAC
192 GCATACAGAGTTCATCCCCAATCTAAGCATAC-GAGTTCATTCCCAATCTAAGATCAGACCGGAC
* * * * *
11287577 CGAAGGTTGCGACAGTAGGATCGACAACACGTAGGGGGGACCGGGTCAATCCCCGGCTTGCACAT
256 CGAAGGTTACGACAGCAGGATCGACAACACGCAGGAGGGACCGGGCCAATCCCCGGCTTGCACAT
* * * * * * ** *
11287642 TTTGCCTCTCCGGCTGGCTGAGCGCCCACATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGT
321 TCTACCTCTCCGACCGACTGAGCACCCACACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGT
* ** * *
11287707 TCATTCCATGTCTAAGCCCCAG-TCGCACCAAGGGTTGTGGTAGCGGGACT-AGCAGCAC-ACAG
386 TCATTCCATGTCTAAGCCCCAGCTAG-ACCAAGGGTTGCAGCAGCAGGACTGA-CAGCACGA-AG
* * * ** * * *
11287769 AG-GGTGATCGGGCTGAT-CCTCGGCTTGTGCATTATGCCTCTTCGGTTGGCTCAGCGCCTGCAC
448 AGAGG-GACCGGGCCGATACC-CGGCTTGCGCATTATGCCTCTTCGGCCGACTCAACGCCCGCAC
11287832 GT
511 GT
* *
11287834 TCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC-TAGTCTAAG
1 TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAG
11287882 ATCGTACTAG
Statistics
Matches: 464, Mismatches: 85, Indels: 22
0.81 0.15 0.04
Matches are distributed among these distances:
511 14 0.03
512 181 0.39
513 265 0.57
514 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (512 bp):
TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAACGAGGGG
TTGCGACAGCAGGACCAGCAGCGGGATCGACTACACGCAGAGGGGGACCGGGCTGATCCCCGACT
TACACATTATGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGATGACTTAGGCAT
ACAGAGTTCATCCCCAATCTAAGCATACGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAAG
GTTACGACAGCAGGATCGACAACACGCAGGAGGGACCGGGCCAATCCCCGGCTTGCACATTCTAC
CTCTCCGACCGACTGAGCACCCACACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT
CCATGTCTAAGCCCCAGCTAGACCAAGGGTTGCAGCAGCAGGACTGACAGCACGAAGAGAGGGAC
CGGGCCGATACCCGGCTTGCGCATTATGCCTCTTCGGCCGACTCAACGCCCGCACGT
Found at i:11294509 original size:158 final size:158
Alignment explanation
Indices: 11294194--11294687 Score: 476
Period size: 158 Copynumber: 3.1 Consensus size: 158
11294184 AAGCATACAA
* * * * * * * *
11294194 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGGGGCAGCAAG-ATCGGCAACACGCA
1 AGTTCATTCCCAGTCTAAGACCAGACCGAACCGAGGGTTGTGGCAACAGGAAT-GACAGCACGCA
* * * * ** * *
11294258 GGGGGGGATCAGGCCGATCCTCGGCTTGTACATTCA-GCCTCTCAGGCCGACTGAGCACCCGCAC
65 -AGGGGGACCGGGCCGATCCTCGACTTGCCCATT-ATGCCTCTCCGACCGACTGAGCACCCGCAC
** * * *
11294322 GCCCGTTTCGTGTGTTGGCTTAGGCATACGG
128 GATCATTTCGTGGGTTGACTTAGGCATACGG
* * * * * * **
11294353 AGTTCATT-CCATGTCTAAGCCCCAG-TCGAATCGAGGGTTGTGGCAGCGGGATTGGTAGCACGC
1 AGTTCATTCCCA-GTCTAAG-ACCAGACCGAACCGAGGGTTGTGGCAACAGGAATGACAGCACGC
* * * * * *
11294416 AAGGGGGACTGGGCCGATCC-CTGACTTGCCCATTATGCCTCTTCGGCCGGCTTAGCGCCCGCAC
64 AAGGGGGACCGGGCCGATCCTC-GACTTGCCCATTATGCCTCTCCGACCGACTGAGCACCCGCAC
*
11294480 GATCATTTCGTGGGTTGACTTATGCATACGG
128 GATCATTTCGTGGGTTGACTTAGGCATACGG
* * *
11294511 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAACAGGAATGACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGACCAGACCGAACCGAGGGTTGTGGCAACAGGAATGACAGCACGCAA
* * * * *
11294576 GGGGGACCGGGTCGATCCTCGACTTGCGCATTATGCCTCTCCGATCGACTGAGCACCCGCATGTT
66 GGGGGACCGGGCCGATCCTCGACTTGCCCATTATGCCTCTCCGACCGACTGAGCACCCGCACGAT
*
11294641 CATTTCATGGGTTGACTTAGGCATACGG
131 CATTTCGTGGGTTGACTTAGGCATACGG
* *
11294669 AGTTCATCCCCAATCTAAG
1 AGTTCATTCCCAGTCTAAG
11294688 CATACAGAGT
Statistics
Matches: 271, Mismatches: 56, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
157 5 0.02
158 216 0.80
159 46 0.17
160 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGACCAGACCGAACCGAGGGTTGTGGCAACAGGAATGACAGCACGCAA
GGGGGACCGGGCCGATCCTCGACTTGCCCATTATGCCTCTCCGACCGACTGAGCACCCGCACGAT
CATTTCGTGGGTTGACTTAGGCATACGG
Found at i:11294532 original size:463 final size:463
Alignment explanation
Indices: 11293684--11294551 Score: 1138
Period size: 463 Copynumber: 1.9 Consensus size: 463
11293674 GTTCATTTCG
* *
11293684 TGGGTTGGCTTAGGCATACTGAGTTCATTCAACATCCAAGCATACAGAGTTCATTCCCAGTCTAA
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCAACATCCAAGCATACAAAGTTCATTCCCAGTCTAA
* * * * * *
11293749 GATCAGATCGGACGGAGGGTTGCGGCAGCAGGATTGGCAGCATGCAGGGGGGACTAGGTCGATCC
66 GATCAGATCGGACCGAGGGTTGCGGCAGCAAGATCGGCAACACGCAGGGGGGACTAGGCCGATCC
* * * * * * * *
11293814 CTGGCTTACACATTCTGCGTCTCCGATCGGTCAAGCTATCGCACGCTCGTTTTGTGGGTTGGCTT
131 CTGGCTTACACATTCAGCCTCTCAGACCGCTCAAGCTACCGCACGCCCGTTTCGTGGGTTGGCTT
* *
11293879 AGGCATATGGAGTTCATTCCATGTCTAAGCCCCAACCGGACAGAGGGTTGTGGCAGCGGGACCGA
196 AGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACAGAGGGTTGTGGCAGCGGGACCGA
* * * ** *
11293944 CAGCACGTAGAGGGGGACCGGATCGATCCCCGGCTTGCGTATTATGCCTCTCCGGCCTGCTCAAC
261 CAGCACGCAGAGGGGGACCGGACCGATCCCCGACTTGCCCATTATGCCTCTCCGGCCGGCTCAAC
* *
11294009 GACCGCACGCTCATTTCGCGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAT
326 GACCGCACGATCATTTCGCGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
*
11294074 CGAACCTAGGGTTGTAGTACCAGGATCGATAGCACGCAAAGGGGACCGAGCCAATCCCCGCACGC
391 CGAACCGAGGGTTGTAGTACCAGGATCGATAGCACGCAAAGGGGACCGAGCCAATCCCCGCACGC
11294139 TCGTTTTA
456 TCGTTTTA
* ** *
11294147 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAA
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCAACATCCAAGCATACAAAGTTCATTCCCAGTCTAA
*
11294212 GATCAGA-CTGGACCGAGGGTTGGGGCAGCAAGATCGGCAACACGCAGGGGGGGA-TCAGGCCGA
66 GATCAGATC-GGACCGAGGGTTGCGGCAGCAAGATCGGCAACACGCA-GGGGGGACT-AGGCCGA
** * * *
11294275 T-CCTCGGCTTGTACATTCAGCCTCTCAGGCCGACT-GAGC-ACCCGCACGCCCGTTTCGTGTGT
128 TCCCT-GGCTTACACATTCAGCCTCTCAGACCG-CTCAAGCTA-CCGCACGCCCGTTTCGTGGGT
**
11294337 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGAATC-GAGGGTTGTGGCAGCG
190 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAA-CAGAGGGTTGTGGCAGCG
** ** * * * *
11294401 GGATTGGTAGCACGCA-AGGGGGACTGGGCCGATCCCTGACTTGCCCATTATGCCTCTTCGGCCG
254 GGACCGACAGCACGCAGAGGGGGACCGGACCGATCCCCGACTTGCCCATTATGCCTCTCCGGCCG
* * * * * *
11294465 GCTTAGCGCCCGCACGATCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAG
319 GCTCAACGACCGCACGATCATTTCGCGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAG
*
11294530 ATCAGACCGGACCGAGGGTTGT
384 ATCAGACCGAACCGAGGGTTGT
11294552 GGCAACAGGA
Statistics
Matches: 344, Mismatches: 54, Indels: 14
0.83 0.13 0.03
Matches are distributed among these distances:
462 1 0.00
463 218 0.63
464 123 0.36
465 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (463 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCAACATCCAAGCATACAAAGTTCATTCCCAGTCTAA
GATCAGATCGGACCGAGGGTTGCGGCAGCAAGATCGGCAACACGCAGGGGGGACTAGGCCGATCC
CTGGCTTACACATTCAGCCTCTCAGACCGCTCAAGCTACCGCACGCCCGTTTCGTGGGTTGGCTT
AGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACAGAGGGTTGTGGCAGCGGGACCGA
CAGCACGCAGAGGGGGACCGGACCGATCCCCGACTTGCCCATTATGCCTCTCCGGCCGGCTCAAC
GACCGCACGATCATTTCGCGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
CGAACCGAGGGTTGTAGTACCAGGATCGATAGCACGCAAAGGGGACCGAGCCAATCCCCGCACGC
TCGTTTTA
Found at i:11294691 original size:26 final size:26
Alignment explanation
Indices: 11294661--11294711 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
11294651 GTTGACTTAG
*
11294661 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
11294687 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAATCTA
11294712 GGATCGGACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:11295546 original size:26 final size:26
Alignment explanation
Indices: 11295510--11295562 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11295500 GTTGACTTAG
*
11295510 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
11295536 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
11295562 G
1 G
11295563 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:11296019 original size:157 final size:156
Alignment explanation
Indices: 11295536--11296035 Score: 472
Period size: 158 Copynumber: 3.2 Consensus size: 156
11295526 CCCAGTCTAA
* ** *
11295536 GCATACGGAGTTCATTCCCA-ATCTAAGATTGGATCGGACTGAGGGTTGCGGCAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGTAGGATCGAC
* * * * *
11295600 AGCACGAAGGGGGGTCTGGGCCGATCACCAGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGTGC
65 AGCACGAAGGGGGATC-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGC
* *
11295665 CTGCACGCCCGTTTCGTGGGTTGGCTTAG
129 C-GCACGCTCGTTTCGTGGGTTTGCTTAG
* ** * * * * * *
11295694 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGATCGAGGGTTGTGGCTGTGGGACCGAT
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGAGGGTTGCGGCAGTAGGATCGAC
* * * * * * * * *
11295758 AACATGCAGAGGGGGATCGGGTCGATCCTCGGCTT-CACATTATACCTCTCCGGTCGGCTCAGTG
65 AGCACG-A-AGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTG
* * * *
11295822 CCCGAACACTTGTTTTGTGGG-TTGACTTAG
128 -CCGCACGCTCGTTTCGTGGGTTTG-CTTAG
* * * * *
11295852 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACCGAGGATTGCAGCAGCAGGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGTAGGATCGAC
* * *
11295916 AGCACGTAAGGGGGATCGGGCC-AGTCCCCGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCG
65 AGCACG-AAGGGGGATCGGGCCGA-TCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTG
* *
11295980 TCGCACGCTCATTTCGTGGGTTTGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTTGCTTAG
11296009 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
11296036 TATACGGATT
Statistics
Matches: 264, Mismatches: 66, Indels: 25
0.74 0.19 0.07
Matches are distributed among these distances:
156 4 0.02
157 71 0.27
158 161 0.61
159 20 0.08
160 8 0.03
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGTAGGATCGACA
GCACGAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCG
CACGCTCGTTTCGTGGGTTTGCTTAG
Found at i:11296268 original size:26 final size:26
Alignment explanation
Indices: 11296218--11296270 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11296208 GTTGACTTAG
*
11296218 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
11296244 GCATACGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCTAATCTAA
11296270 G
1 G
11296271 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:11296597 original size:26 final size:26
Alignment explanation
Indices: 11296561--11296620 Score: 111
Period size: 26 Copynumber: 2.3 Consensus size: 26
11296551 GTTGGCTTAG
11296561 GCATACGGAGTTCACTCCATGTCTAA
1 GCATACGGAGTTCACTCCATGTCTAA
*
11296587 GCATATGGAGTTCACTCCATGTCTAA
1 GCATACGGAGTTCACTCCATGTCTAA
11296613 GCATACGG
1 GCATACGG
11296621 GGCACCATCG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCATGTCTAA
Found at i:11296642 original size:11 final size:11
Alignment explanation
Indices: 11296626--11296662 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
11296616 TACGGGGCAC
11296626 CATCGCCGGAG
1 CATCGCCGGAG
*
11296637 CATCGCTGGAG
1 CATCGCCGGAG
*
11296648 CATCGTCGGAG
1 CATCGCCGGAG
11296659 CATC
1 CATC
11296663 ATCGAAGAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.16
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:11297277 original size:26 final size:26
Alignment explanation
Indices: 11297241--11297291 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11297231 TGACTTCGAT
11297241 ATACAGAGTTCA-TCCCTAGTCTAAGC
1 ATACAGAGTTCATTCCC-AGTCTAAGC
11297267 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
11297292 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:11297554 original size:158 final size:159
Alignment explanation
Indices: 11297325--11297696 Score: 444
Period size: 159 Copynumber: 2.4 Consensus size: 159
11297315 ATAGCAGGAT
* * * * * *
11297325 CGGCAGCACGCAG-GGGGGATCGGG-CTGATCCCCAGCTTGCGCATTTTGCCTCTCCGATCGGCT
1 CGGCAGCAAGCAGAGGGGGATCGGGTC-GATCCCCGGCTTGCGCATTATGCCTCTCCAACCAGCT
* * * *
11297388 AAGCGCCCGCATAC-CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCC
65 AAGCGCCCGCACACTCCTTTCATGGGTTAGCTGAGGCATAGGGAGTTAATTCCATGTCTAAGCCC
11297452 CAGCCGGACCGAGGGTTGTGGCAGCGGGAC
130 CAGCCGGACCGAGGGTTGTGGCAGCGGGAC
* * *
11297482 CGGCAGCATGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCAACCAGCTG
1 CGGCAGCAAGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCAACCAGCTA
* * * *
11297547 AGTGCCCGCACACTCCTTTCGTGGGTTAGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGCCCT
66 AGCGCCCGCACACTCCTTTCATGGGTTAGCTGAGGCATAGGGAGTTAATTCCATGTCTAAGCCCC
** * *
11297612 AGTTGGACTGAGGGTTGTGGCAGCGGGAT
131 AGCCGGACCGAGGGTTGTGGCAGCGGGAC
* * ** ** * * *
11297641 CGACAGTAAGCAGATAGGGATCAAGTCGATCCCTGACTTGCACATTATGCCTCTCC
1 CGGCAGCAAGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCC
11297697 GGCTGGATCA
Statistics
Matches: 182, Mismatches: 30, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
157 12 0.07
158 54 0.30
159 116 0.64
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (159 bp):
CGGCAGCAAGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCAACCAGCTA
AGCGCCCGCACACTCCTTTCATGGGTTAGCTGAGGCATAGGGAGTTAATTCCATGTCTAAGCCCC
AGCCGGACCGAGGGTTGTGGCAGCGGGAC
Found at i:11297742 original size:159 final size:159
Alignment explanation
Indices: 11297389--11297766 Score: 393
Period size: 159 Copynumber: 2.4 Consensus size: 159
11297379 CGATCGGCTA
* * * * * *
11297389 AGCGCCCGCATAC-CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCC
1 AGCGCCCGCACACTCCTTTCGTGAGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
* * * ** *
11297453 AGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCATGCAGAGGGGGATCGGGTCGATCCCCGG
66 AGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCAAGCAGAGAGGGATCAAGTCGATCCCCGA
* * * *
11297518 CTTGCGCATTCTGCCTCTCCAACCAGCTG
131 CTTGCACATTATGCCTCTCCAACCAGATC
* * * *
11297547 AGTGCCCGCACACTCCTTTCGTGGGTTAGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGCCCT
1 AGCGCCCGCACACTCCTTTCGTGAGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
** * * * * *
11297612 AGTTGGACTGAGGGTTGTGGCAGCGGGATCGACAGTAAGCAGATAGGGATCAAGTCGATCCCTGA
66 AGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCAAGCAGAGAGGGATCAAGTCGATCCCCGA
** **
11297677 CTTGCACATTATGCCTCTCCGGCTGGATC
131 CTTGCACATTATGCCTCTCCAACCAGATC
* * * **
11297706 AGCGCCCGCACGCTCGTTTCGTGAGTT-GATTTAGGCATATTGAGTTCATTCCCA-GTCTAAG
1 AGCGCCCGCACACTCCTTTCGTGAGTTAG-CTTAGGCATAGGGAGTTCATT-CCATGTCTAAG
11297767 ATCGGACCAG
Statistics
Matches: 180, Mismatches: 37, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
158 12 0.07
159 165 0.92
160 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
AGCGCCCGCACACTCCTTTCGTGAGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
AGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCAAGCAGAGAGGGATCAAGTCGATCCCCGA
CTTGCACATTATGCCTCTCCAACCAGATC
Found at i:11298308 original size:26 final size:26
Alignment explanation
Indices: 11298278--11298330 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11298268 GTTGACTTAT
*
11298278 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
*
11298304 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11298330 G
1 G
11298331 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11298734 original size:159 final size:157
Alignment explanation
Indices: 11298304--11298734 Score: 411
Period size: 159 Copynumber: 2.7 Consensus size: 157
11298294 CTCAGTCTAA
* * * * * *
11298304 GCATATAGAGTTCATTCCCAGTCTAAGATCGGATCAGAA-TGAGGGTTACGACAGCAGGATCGAT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGA-CCGAACTGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
11298368 AGCACGCAAGAGGGACCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGTCGGTTGAGCGC
65 AGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGTGCATTCTGCCTTTTCGATCGGTTCAGCGC
*
11298433 CCACATGCCCGTTTCATGGGTTGGCTTAG
130 CCACA-GCCCGTTTCATGGGTTGACTTAG
** * ** * * * * *
11298462 GCATAGGGAGTTCATT-CCATGTCCAAGCCCCAG-TCGGACTGAGGGTTGTGGCAACAGGATCGG
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCGA
* ** * * *
11298525 CAGCACGTAGTGGGGGACTGGGCTGATCCCCGGCTTGCGCATTATGCCTTTTCGATCGGTTCAGC
64 CAGCACGCAG-GGGGGACCAGGCCGATCCCCGGCTTGTGCATTCTGCCTTTTCGATCGGTTCAGC
** *
11298590 GCCCGAACA-CTTGTTTCGTGGGTTGACTTAG
128 GCCC--ACAGCCCGTTTCATGGGTTGACTTAG
* *
11298621 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGTAGTAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
11298686 GCACACAGGCGGGGACCAGGTCGGTCCCTGACTTGTGCATTCTACCTTT
66 GCACGCAGG-GGGGACCAGGCCGATCCCCGGCTTGTGCATTCTGCCTTT
11298735 CCAGCCCGTT
Statistics
Matches: 210, Mismatches: 54, Indels: 17
0.75 0.19 0.06
Matches are distributed among these distances:
157 5 0.02
158 50 0.24
159 149 0.71
160 3 0.01
161 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGTGCATTCTGCCTTTTCGATCGGTTCAGCGCC
CACAGCCCGTTTCATGGGTTGACTTAG
Found at i:11298822 original size:26 final size:26
Alignment explanation
Indices: 11298782--11298833 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11298772 TAGGTTAGGC
11298782 ATACGGAGTTCATTCC-ACATCTAAGA
1 ATACGGAGTTCATTCCTA-ATCTAAGA
*
11298808 ATACGGAGTTTATTCCTAATCTAAGA
1 ATACGGAGTTCATTCCTAATCTAAGA
11298834 TCGGACCAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCTAATCTAAGA
Found at i:11299018 original size:26 final size:26
Alignment explanation
Indices: 11298989--11299041 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11298979 GTTGACTTAG
11298989 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
11299015 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11299041 G
1 G
11299042 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11299103 original size:711 final size:710
Alignment explanation
Indices: 11298243--11300069 Score: 2128
Period size: 711 Copynumber: 2.6 Consensus size: 710
11298233 ACGGTCGACT
* *
11298243 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATCCTCAGTCTAAGCAT
1 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT
* * * *
11298308 ATAGAGTTCATTCCCAGTCTAAGATCGGATCAGAATGAGGGTTACGACAGCAGGATCGATAGCAC
66 ATAGAGTTCATTCCCAGTCTAAGATCGGATCGGAACGAGGGTTGCGACAGTAGGATCGATAGCAC
* * * * *
11298373 GCAAGAGGGACCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGTCGGTTGAGCGCCCACA
131 GCAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCA
* *
11298438 TGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCCAAGCCCCAGTCGGACTG
196 TGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCCAAGCCCCAG-CAGACTG
* * * * * * *
11298503 AGGGTTGTGGCAACAGGATCGGCAGCACGTAGTGGGGGACTGGGCTGATCCCCGGCTTGCGCATT
260 AGGGTTGTGGCAGCGGGACCGGCAGAAAGCAGTGGGGGACTGGGCCGATCCCCGGCTTGCGCATT
* * * * * * *
11298568 ATGCCTTTTCGATCGGTTCAGCGCCCGAACACTTGTTTCGTGGGTTGACTTAGGCATACAGAGTT
325 ATGCCTCTCCGGTCGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * *
11298633 CATTCCCAGTCTAAGATCAGACCGAA-CTGAGGGTTGCGGTAGTAGGATCGACAGCACACAGGCG
390 CATTCCCAGTCTAAGATCAGACCGAATC-GAGGGTTGCGGCAGCAGGATCAACAACACACAGG-G
* * ** * *
11298697 GGGACCAGGTCGGTCC-CTGACTTGTGCATTCTACCTTTCC-AGCCCGTTGAGTGCCCGCACGCT
453 GGGACCAGGCCGGTCCTCAG-CTTACGCATTCTACCTCTCCGA-CCCGCTGAGTGCCCGCACGCT
* * * *
11298760 CGTTTTGTGGCTTAGGTTAGGCATACGGAGTTCATTCCACATCTAAGAATACGGAGTTTATTCCT
516 CATTTCGTGGCTTAGCTTAGGCATACGGAGTTCATTCCACATCTAAGAATACGGAGTTCATTCCT
* * **
11298825 AATCTAAGATCGGACCAGATCGAAGGTTACGATAGCAAG-ACCAGTAGCAGGATCGGTAACACA-
581 AATCTAAGATCGGACCAGACCGAAGGTTACGATA-CAAGCACCAGCAGCAGGATCGACAACACAC
* * * * * * *
11298888 AAAGAGGGACCGAGCCGATCCCCGGCCTGTGCATTCTGCTTCTTCGGTCGGCCTCTC-TAGCTGG
645 AAAGAGGGACCGAGCCGATCCCCAGCCTGCGCATTCTACCTCTCCGGTAGGCCTCTCAT-GCCGG
11298952 CTA
709 C-A
* **
11298955 -AGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT
1 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT
** * * *
11299019 ACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGTAGGATCGACAGCAC
66 ATAGAGTTCATTCCCAGTCTAAGATCGGATCGGAACGAGGGTTGCGACAGTAGGATCGATAGCAC
* ** * * *
11299084 GTAGGGGGGACCGGGCCGATCCCCAACTTGTACATTCTGCCTC-TCCGACTGGCTGAGCGCCCGC
131 GCAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGTC-GGCTGAGCGCCCGC
*
11299148 ATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATCTCTC-AGCCCCAGCTAGAC
195 ATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC-CAAGCCCCAGC-AGAC
* * * * * * **
11299212 CGAGGATTGTGGCAGCGGGACCGACAGTAAGCAGAT-GAGGATTGGGCCGATCCCTAGCTTGCGC
258 TGAGGGTTGTGGCAGCGGGACCGGCAGAAAGCAG-TGGGGGACTGGGCCGATCCCCGGCTTGCGC
* * * * *
11299276 ATTATGCCTCTCCGGTCGACTCAGTGCCCGAACGCTCATTTTGTGGGTTGACTTAGGTATACGGA
322 ATTATGCCTCTCCGGTCGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* *
11299341 GTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCAACAACACACAGG
387 GTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGGCAGCAGGATCAACAACACACAGG
** * * *
11299406 GGGGACTGGGCCGGTCCTCAGCTTACGCATTCTGCCTCTCCGATCGGCTGAGTGCCCGCACGCTC
452 GGGGACCAGGCCGGTCCTCAGCTTACGCATTCTACCTCTCCGACCCGCTGAGTGCCCGCACGCTC
* * * * ** *
11299471 ATTTCGTGGGTTTGCTTCGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTA
517 ATTTCGTGGCTTAGCTTAGGCATACGGAGTTCATTCCACATCTAAGAATACGGAGTTCATTCCTA
* * * * * * * * * * *
11299536 GTCTAAGATCGGATCGGACCGAGGGTTACGGTACCAGCACCAGCAGTAGGATTGACAGCATACAG
582 ATCTAAGATCGGACCAGACCGAAGGTTACGATACAAGCACCAGCAGCAGGATCGACAACACACAA
* * * * * * *
11299601 GGGGGGATCGGGCCGATCCCCAGCTTGCGTATTTTACCTCTCCGGTAGGCCTCTCATGCCGGCA
647 AGAGGGACCGAGCCGATCCCCAGCCTGCGCATTCTACCTCTCCGGTAGGCCTCTCATGCCGGCA
* * * *
11299665 GAGCGCCCGCACGCTCGTTTCATGGCTTTACTTAGGCATACAGAGTTCATCTCCAGTCTAAGCAT
1 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT
* * * *
11299730 ATAGAGTTCATTCCCAGTCTAAGATTGGATTGGATCGAGGGTTGCGACAGTAGGATCAATAGCAC
66 ATAGAGTTCATTCCCAGTCTAAGATCGGATCGGAACGAGGGTTGCGACAGTAGGATCGATAGCAC
* * * * * * * *
11299795 ACAGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCAGCTGAGCGCCCGCA
131 GCAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCA
* * *
11299860 CGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACTG
196 TGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCCAAGCCCCAG-CAGACTG
* * * * * * *
11299925 AGGGTTGTGGTAGCGGGACCGGCAGAATGCAGAGGGGGACCGGGCCGATACCCGACTTGCACATT
260 AGGGTTGTGGCAGCGGGACCGGCAGAAAGCAGTGGGGGACTGGGCCGATCCCCGGCTTGCGCATT
* * *** * * * *
11299990 TTACCTCAGGGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
325 ATGCCTCTCCGGTCGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
11300055 CATT-CCATGTCTAAG
390 CATTCCCA-GTCTAAG
11300070 CATACAGAGT
Statistics
Matches: 926, Mismatches: 173, Indels: 33
0.82 0.15 0.03
Matches are distributed among these distances:
709 3 0.00
710 156 0.17
711 760 0.82
712 7 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (710 bp):
GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT
ATAGAGTTCATTCCCAGTCTAAGATCGGATCGGAACGAGGGTTGCGACAGTAGGATCGATAGCAC
GCAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCA
TGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCCAAGCCCCAGCAGACTGA
GGGTTGTGGCAGCGGGACCGGCAGAAAGCAGTGGGGGACTGGGCCGATCCCCGGCTTGCGCATTA
TGCCTCTCCGGTCGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGGCAGCAGGATCAACAACACACAGGGGGG
ACCAGGCCGGTCCTCAGCTTACGCATTCTACCTCTCCGACCCGCTGAGTGCCCGCACGCTCATTT
CGTGGCTTAGCTTAGGCATACGGAGTTCATTCCACATCTAAGAATACGGAGTTCATTCCTAATCT
AAGATCGGACCAGACCGAAGGTTACGATACAAGCACCAGCAGCAGGATCGACAACACACAAAGAG
GGACCGAGCCGATCCCCAGCCTGCGCATTCTACCTCTCCGGTAGGCCTCTCATGCCGGCA
Found at i:11299469 original size:158 final size:156
Alignment explanation
Indices: 11299015--11299516 Score: 492
Period size: 158 Copynumber: 3.2 Consensus size: 156
11299005 CCCAGTCTAA
* *
11299015 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACCGAGGGTTGCGACAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
** * * ** *
11299079 AGCACGTAGGGGGGACCGGGCCGATCCCCAACTTGTACATTCTGCCTCTCCGA-CTGGCTGAGCG
65 AGCACACAGGGGGGACTGGGCCGAT-CCCAGCTTGCGCATTCTGCCTCTCCGATC-GGCTGAGTG
* * *
11299143 CCCGCATGCCCATTTCATGGGTTGGCTTAG
128 CCCGCACGCTCATTTCGTGGGTT-GCTTAG
* * * ** * * * * * *
11299173 GCATAGGGAGTTCATTCCATCTCTCAGCCCCAGCT-AGACCGAGGATTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * *
11299237 AGTA-AGCAGATGAGGATTGGGCCGATCCCTAGCTTGCGCATTATGCCTCTCCGGTCGACTCAGT
65 AGCACA-CAG-GGGGGACTGGGCCGATCCC-AGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGT
* *
11299301 GCCCGAACGCTCATTTTGTGGGTTGACTTAG
127 GCCCGCACGCTCATTTCGTGGGTTG-CTTAG
* * *
11299332 GTATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * *
11299396 AACACACAGGGGGGACTGGGCCGGTCCTCAGCTTACGCATTCTGCCTCTCCGATCGGCTGAGTGC
65 AGCACACAGGGGGGACTGGGCCGATCC-CAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGC
*
11299461 CCGCACGCTCATTTCGTGGGTTTGCTTCG
129 CCGCACGCTCATTTCGTGGG-TTGCTTAG
*
11299490 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
11299517 CATACGGAGT
Statistics
Matches: 268, Mismatches: 63, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
157 6 0.02
158 143 0.53
159 114 0.43
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACACAGGGGGGACTGGGCCGATCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCC
GCACGCTCATTTCGTGGGTTGCTTAG
Found at i:11299526 original size:26 final size:26
Alignment explanation
Indices: 11299490--11299542 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11299480 GTTTGCTTCG
*
11299490 GCATATGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
11299516 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
11299542 G
1 G
11299543 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:11299730 original size:26 final size:26
Alignment explanation
Indices: 11299700--11299752 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11299690 CTTTACTTAG
11299700 GCATACAGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
*
11299726 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11299752 G
1 G
11299753 ATTGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11300079 original size:26 final size:26
Alignment explanation
Indices: 11300043--11300095 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11300033 GTTGGCTTAG
*
11300043 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
11300069 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11300095 G
1 G
11300096 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11300719 original size:26 final size:26
Alignment explanation
Indices: 11300683--11300735 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11300673 GTTGGCTTAG
11300683 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11300709 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11300735 G
1 G
11300736 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11301133 original size:159 final size:165
Alignment explanation
Indices: 11300958--11301344 Score: 423
Period size: 171 Copynumber: 2.3 Consensus size: 165
11300948 TGGCTCAGCG
* * * * *
11300958 CCCGCACGCTCATTTCATGGGTTGACTTATGCATACAGATTTCAATCCCAGTCTAAGATCGGATC
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCAATCCCAGTCTAAGATCGGACC
* * * *
11301023 AAATTGAGGG-T-TA-C-GA-C-AGCAGGATCGACAGCACGCACG-GGGGGATCGGGTCGATCCT
66 AAACTGAGGGTTATAGCAGACCAAGCAGGATCGACAGCACACA-GAGGGGGACCGGGTCGATCCC
*
11301081 C-AGTTTGCGCATTTTGCCTCTCCGACCGACTGAGCA
130 CGAG-TTACGCATTTTGCCTCTCCGACCGACTGAGCA
* * * *
11301117 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACC
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCAATCCCAGTCTAAGATCGGACC
** * *
11301182 GGACTGAGGGTTGCAATAGCAGGACCAGTAGCAGGATCGGCAGCACACAGAGGGGGACCGGGTTG
66 AAACTGAGGGTT---ATAGCA-GACCA--AGCAGGATCGACAGCACACAGAGGGGGACCGGGTCG
*
11301247 ATCCCCGAGTTACGCATTTTGCCTCTCTGACCGACTGAGCA
125 ATCCCCGAGTTACGCATTTTGCCTCTCCGACCGACTGAGCA
* * * *
11301288 CCCACACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC-ATTCCATGTCTAAG
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCAATCCCA-GTCTAAG
11301345 CCCCAATCAG
Statistics
Matches: 189, Mismatches: 24, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
159 63 0.33
160 1 0.01
164 2 0.01
165 1 0.01
167 2 0.01
168 1 0.01
170 4 0.02
171 113 0.60
172 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.24
Consensus pattern (165 bp):
CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCAATCCCAGTCTAAGATCGGACC
AAACTGAGGGTTATAGCAGACCAAGCAGGATCGACAGCACACAGAGGGGGACCGGGTCGATCCCC
GAGTTACGCATTTTGCCTCTCCGACCGACTGAGCA
Found at i:11301363 original size:171 final size:171
Alignment explanation
Indices: 11301040--11301516 Score: 521
Period size: 171 Copynumber: 2.8 Consensus size: 171
11301030 GGGTTACGAC
* * *
11301040 AGCAGGATCGACAGCACGCACG-GGGGGATCGGGTCGATCCTC-AGTTTGCGCATTTTGCCTCTC
1 AGCAGGATCGGCAGCACGCA-GAGGGGGATCGGGTTGATCCCCGAG-TTGCGCATTTTGCCTCTC
11301103 CGACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC-TA
64 CGACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-
***** * *
11301167 GTCTAAGATTGGACCGGACTGAGGGTTGCAATAGCAGGACCAGT
128 GTCTAAGCCCCAACCAGACTGAGGGTTGCAATAGCAAGACCAGT
* * * *
11301211 AGCAGGATCGGCAGCACACAGAGGGGGACCGGGTTGATCCCCGAGTTACGCATTTTGCCTCTCTG
1 AGCAGGATCGGCAGCACGCAGAGGGGGATCGGGTTGATCCCCGAGTTGCGCATTTTGCCTCTCCG
* *
11301276 ACCGACTGAGCACCCACACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
66 ACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* * *** * *
11301341 TAAGCCCCAATCAGATTGAGGGTTGTGGTAGCAAGATCGGT
131 TAAGCCCCAACCAGACTGAGGGTTGCAATAGCAAGACCAGT
** * * * * * *
11301382 AGTGGGATCAGCAGCATGCAGAGGGGGATCGGGCTGATCCCCGACTTGCGTATTATGCCTCTCCG
1 AGCAGGATCGGCAGCACGCAGAGGGGGATCGGGTTGATCCCCGAGTTGCGCATTTTGCCTCTCCG
*** ** ** * * *
11301447 GTGGGTTTTGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGAATACGGAGTTCATCCCCA-GT
66 ACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGT
11301511 CTAAGC
130 CTAAGC
11301517 ATACGGAGTT
Statistics
Matches: 255, Mismatches: 47, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
170 1 0.00
171 248 0.97
172 6 0.02
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (171 bp):
AGCAGGATCGGCAGCACGCAGAGGGGGATCGGGTTGATCCCCGAGTTGCGCATTTTGCCTCTCCG
ACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGCCCCAACCAGACTGAGGGTTGCAATAGCAAGACCAGT
Found at i:11301521 original size:26 final size:26
Alignment explanation
Indices: 11301491--11301541 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
11301481 TGACTTAGGA
11301491 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
11301517 ATACGGAGTTCATCCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
11301542 ATCGGATGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:11301869 original size:159 final size:158
Alignment explanation
Indices: 11301654--11302006 Score: 352
Period size: 159 Copynumber: 2.2 Consensus size: 158
11301644 CGCACGTCCA
* * * * * * *
11301654 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CC-ATTTCACA-ACCTTGATCAGACCGAGG
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCT-A-AGATC-GGACCAGACAGAGG
* *** *
11301716 GTTGTGGTAACGGGACCGACAGCACACAGAGGTGGATCGGGCCGATCCCCAGCTTGCGCATTATG
63 GTTGCGGTAACAACACCGACAGCACACAGAGGTGGATCGGGCCGATCCCCAGCTTACGCA-TATG
* * * *
11301781 CCTCTTCGGTCGGCTCAGTGTCCAAACGCTCG
127 CCTCTCCAGACGGCTCAGTGCCCAAACGCTCG
*
11301813 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACAGAGGGTT
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACAGAGGGTT
* * * * * * * * * * *
11301878 GCGGTAGCAACATCGATAGCACGCAGGGGTGGTTTGGGTCGGTCCCCGGCTTACGCATCTGCCTC
66 GCGGTAACAACACCGACAGCACACAGAGGTGGATCGGGCCGATCCCCAGCTTACGCATATGCCTC
** *
11301943 TCCAGACGGCTCAGTGCCCGCACGCTTG
131 TCCAGACGGCTCAGTGCCCAAACGCTCG
* *
11301971 TTTCATGGGTTGGCTTAGGCATACGGTGTTCATTCC
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
11302007 ATGTCTAAGC
Statistics
Matches: 157, Mismatches: 34, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
158 61 0.39
159 88 0.56
160 5 0.03
161 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACAGAGGGTT
GCGGTAACAACACCGACAGCACACAGAGGTGGATCGGGCCGATCCCCAGCTTACGCATATGCCTC
TCCAGACGGCTCAGTGCCCAAACGCTCG
Found at i:11302337 original size:163 final size:159
Alignment explanation
Indices: 11302130--11302533 Score: 440
Period size: 159 Copynumber: 2.5 Consensus size: 159
11302120 TCTCTGGTCA
* * * * *
11302130 GCCTCTCCGGCCGACTGAGTGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTT-A
1 GCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
* * *
11302194 TTCC-TAGTCTAAGCATAAGATCGAATCAGATCGAGGGTTGCAGCAG-CAGCATCGGTAGCACGT
66 TTCCAT-GTCTAAGCATAAG--C--A--AGATCGAGGGTTGCAGCAGTCAG-ACCGGCAGCACAT
* *
11302257 AG-GGGGGACCGGGCCGATCC-CTAGCTTACGCATTCT
123 AGAGGGGGACCAGGCCAATCCTC-AGCTTACGCATTCT
** * * *
11302293 GCCTCTCCGGTTGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCA
1 GCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
*** * ** *
11302358 TTCCATGTCTAAGCCCCAGCAGGATCGAGGGTTGTGGCAGTGAGACCGGCAGCACATAGAGGGGG
66 TTCCATGTCTAAGCATAAGCAAGATCGAGGGTTGCAGCAGTCAGACCGGCAGCACATAGAGGGGG
*
11302423 ACCAGGCCAATCCTCGGCTTACGCATTCT
131 ACCAGGCCAATCCTCAGCTTACGCATTCT
* * * * *
11302452 GGCTCTCTGGCCGACTGAGCGCCAGCACGCTCGTTCCGTGGGTTGGCTTAGGCATACGGAGTTCA
1 GCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
11302517 TTCCATGTCTAAGCATA
66 TTCCATGTCTAAGCATA
11302534 GGAGTTCATT
Statistics
Matches: 200, Mismatches: 36, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
158 28 0.14
159 100 0.50
160 2 0.01
162 1 0.00
163 53 0.26
164 15 0.08
165 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
TTCCATGTCTAAGCATAAGCAAGATCGAGGGTTGCAGCAGTCAGACCGGCAGCACATAGAGGGGG
ACCAGGCCAATCCTCAGCTTACGCATTCT
Found at i:11302538 original size:25 final size:26
Alignment explanation
Indices: 11302503--11302554 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
11302493 GTTGGCTTAG
11302503 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11302529 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11302554 G
1 G
11302555 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11303242 original size:26 final size:26
Alignment explanation
Indices: 11303213--11303265 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11303203 GTCGACTTAG
*
11303213 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
11303239 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11303265 G
1 G
11303266 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11303797 original size:26 final size:26
Alignment explanation
Indices: 11303768--11303820 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11303758 GTTGACTTAG
*
11303768 GCATACGGATTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
11303794 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11303820 G
1 G
11303821 ATTAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11304295 original size:26 final size:26
Alignment explanation
Indices: 11304265--11304317 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11304255 GTTGGCTTAG
*
11304265 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
11304291 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
11304317 G
1 G
11304318 ATTAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:11304682 original size:26 final size:26
Alignment explanation
Indices: 11304645--11304697 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11304635 GTTGACTTAG
11304645 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGGAGTTCACT-CCCAGTCTAA
* *
11304671 GCATACGTAGTTCACTGCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
11304697 G
1 G
11304698 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:11305010 original size:157 final size:158
Alignment explanation
Indices: 11304671--11305012 Score: 377
Period size: 157 Copynumber: 2.2 Consensus size: 158
11304661 CCCAGTCTAA
* *
11304671 GCATACGTAGTTCACTGCCAGTCTAAGATCAGACCGGATCAAGGGTTATGGCAGCAGGACCGACA
1 GCATACGAAGTTCACTCCCAGTCTAAGATCAGACCGGATCAAGGGTTATGGCAGCAGGACCGACA
** * * * *
11304736 GCACGTAGGGGGGATCGGGCTGATCCCTGGCTTACGCACTATGCCTCTCCGGTTGGCTCAGCGCC
66 GCACGTAGGGGGGATCGGGCTGATCCCCAGCTTACGCACTATACCTCTCCAGTAGACTCAGCGCC
** *
11304801 CGCACACTTGTTTCATGGGTTTACTTAG
131 CGCACACTCATTTCATGGGTTGACTTAG
* * * * * *
11304829 GCATACGAAGTTTATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTACT-GCAGCAGGATCGAC
1 GCATACGAAGTTCACTCCCAGTCTAAGATCAGACCGGATCAAGGGTTA-TGGCAGCAGGACCGAC
* ** * * *
11304893 AGCACGTAGGGGGGA-CGAG-TCGATCCCCAGCTTGTGCATTCTACCTCTCCAGTAGACTGAGCG
65 AGCACGTAGGGGGGATCGGGCT-GATCCCCAGCTTACGCACTATACCTCTCCAGTAGACTCAGCG
* *
11304956 CCCGCACGCTCATTTCATGGGTTGGCTTAG
129 CCCGCACACTCATTTCATGGGTTGACTTAG
* * *
11304986 GGATACGGAGTTCAGT-CCATGTCTAAG
1 GCATACGAAGTTCACTCCCA-GTCTAAG
11305013 CATACGGAGT
Statistics
Matches: 152, Mismatches: 29, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
156 4 0.03
157 78 0.51
158 69 0.45
159 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGAAGTTCACTCCCAGTCTAAGATCAGACCGGATCAAGGGTTATGGCAGCAGGACCGACA
GCACGTAGGGGGGATCGGGCTGATCCCCAGCTTACGCACTATACCTCTCCAGTAGACTCAGCGCC
CGCACACTCATTTCATGGGTTGACTTAG
Found at i:11305017 original size:26 final size:26
Alignment explanation
Indices: 11304988--11305038 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11304978 TGGCTTAGGG
11304988 ATACGGAGTTCAGT-CCATGTCTAAGC
1 ATACGGAGTTCAGTCCCA-GTCTAAGC
*
11305014 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCAGTCCCAGTCTAAG
11305039 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCAGTCCCAGTCTAAGC
Found at i:11305401 original size:26 final size:26
Alignment explanation
Indices: 11305365--11305417 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11305355 GTTGACTTAG
*
11305365 GCATACGGAGTTTA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
11305391 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11305417 G
1 G
11305418 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11305742 original size:26 final size:26
Alignment explanation
Indices: 11305693--11305745 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11305683 GTTAGCTTAG
* *
11305693 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
11305719 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
11305745 G
1 G
11305746 ATCGAATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:11306218 original size:26 final size:26
Alignment explanation
Indices: 11306182--11306234 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11306172 GTTGACTTAG
*
11306182 GCATATGGAGTTCA-ACCCTAGTCTAA
1 GCATACGGAGTTCATACCC-AGTCTAA
*
11306208 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
11306234 G
1 G
11306235 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:11306835 original size:159 final size:159
Alignment explanation
Indices: 11306465--11306835 Score: 449
Period size: 159 Copynumber: 2.3 Consensus size: 159
11306455 CAGTAGGATC
* * * *
11306465 GACAGCACACAG-GGGGGATCGGGCCAATCCTTGACTTGTGCATTCTGCCTCTCCGGCCGACTGA
1 GACAGCACACAGAGGGGGATCGGGCCAATCCTCGACTTGCGCATTCTGACTCTCAGGCCGACTGA
* * **
11306529 GCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGATTTCATTCCATGTCTAAGCCCTG
66 GCGCCCGTACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
* * * *
11306594 GCCAGACCGAGGGTTGTGGCAACGAGACT
131 ACCAGACCAAAGGTTGTGACAACGAGACT
* * * *** * * * **
11306623 GGCAGCACGCAGAGGGGGACCGGGTTGATCCTC-AGCTTGCGCACTCTGTCTCTCAGGTCGGTTG
1 GACAGCACACAGAGGGGGATCGGGCCAATCCTCGA-CTTGCGCATTCTGACTCTCAGGCCGACTG
* *
11306687 AGCGCCCGTGCACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCC
65 AGCGCCCGTACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
* *
11306752 AACCGGACCAAAGGTTGTGACAGCGAGACT
130 AACCAGACCAAAGGTTGTGACAACGAGACT
* * *
11306782 GACAGCACACAGAGGCGGATCGGGCCAATCCCCGACTTGCGCATTATGACTCTC
1 GACAGCACACAGAGGGGGATCGGGCCAATCCTCGACTTGCGCATTCTGACTCTC
11306836 CGACCGATTC
Statistics
Matches: 173, Mismatches: 37, Indels: 5
0.80 0.17 0.02
Matches are distributed among these distances:
158 11 0.06
159 161 0.93
160 1 0.01
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
GACAGCACACAGAGGGGGATCGGGCCAATCCTCGACTTGCGCATTCTGACTCTCAGGCCGACTGA
GCGCCCGTACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
ACCAGACCAAAGGTTGTGACAACGAGACT
Found at i:11307206 original size:26 final size:26
Alignment explanation
Indices: 11307177--11307229 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11307167 GTTAACTTAG
11307177 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
11307203 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
11307229 G
1 G
11307230 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:11307521 original size:159 final size:159
Alignment explanation
Indices: 11307203--11307555 Score: 381
Period size: 159 Copynumber: 2.2 Consensus size: 159
11307193 CCCAATCTAA
* * *
11307203 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGCGGCAGCAAGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAGACAGAAGGTTGCGGCAGCAAGATCAACA
* * * * * *
11307268 GCACGCAAAGGGGACTGGGCCAATCCCAGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
66 GCACGCAAAGGGGACCGGGCCAATCCCAGGCTTGCACATTATGCCTCTCCGATCGACTCAACGCC
* * * * *
11307333 CGCACGCTCATTTTTGTGTGTTGGCTTAG
131 CGAACGCTCAGTTTCGTGGGTTGACTTAG
* * * * * * *
11307362 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAAGGTTGTGGTAGCGAGATCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGACCAGACAGAAGGTTGCGGCAGCAAGATCAA
* ** * * *
11307425 TAGCACGCAGAAGGGGACCGGGCTGATCCCCGGCTTGCACATTATGTCTCTTCGA-CAGACTCAA
64 CAGCACGCA-AAGGGGACCGGGCCAATCCCAGGCTTGCACATTATGCCTCTCCGATC-GACTCAA
11307489 CGCCCGAACGCTC-GTTTCGTGGGTTGACTTAG
127 CGCCCGAACGCTCAGTTTCGTGGGTTGACTTAG
* *
11307521 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACC
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACC
11307556 TGACTAGGGT
Statistics
Matches: 158, Mismatches: 30, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
158 6 0.04
159 93 0.59
160 59 0.37
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.22
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAGACAGAAGGTTGCGGCAGCAAGATCAACA
GCACGCAAAGGGGACCGGGCCAATCCCAGGCTTGCACATTATGCCTCTCCGATCGACTCAACGCC
CGAACGCTCAGTTTCGTGGGTTGACTTAG
Found at i:11307728 original size:26 final size:26
Alignment explanation
Indices: 11307678--11307730 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11307668 GTTGGCTTAG
*
11307678 GCATACAAAGTTCATTCCATGTCTAA
1 GCATACAAAGTTCATTCCATATCTAA
*
11307704 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAAAGTTCATT-CCATATCTAA
11307730 G
1 G
11307731 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCATATCTAA
Found at i:11308066 original size:26 final size:26
Alignment explanation
Indices: 11308036--11308085 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
11308026 GGCTTAGGCA
11308036 TACGGAGTTCATT-CCATGTCTAAGCT
1 TACGGAGTTCATTCCCA-GTCTAAGCT
11308062 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
11308086 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:11308474 original size:27 final size:27
Alignment explanation
Indices: 11308427--11308482 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
11308417 GGGATGACTT
*
11308427 AGGCATACGGAGTTTCATCCCCA-TCTA
1 AGGCATACGGAGTTCCAT-CCCAGTCTA
*
11308454 AGGCATATGGAG-TCCATTCCCAGTCTA
1 AGGCATACGGAGTTCCA-TCCCAGTCTA
11308481 AG
1 AG
11308483 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
26 7 0.28
27 18 0.72
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (27 bp):
AGGCATACGGAGTTCCATCCCAGTCTA
Found at i:11310321 original size:26 final size:26
Alignment explanation
Indices: 11310285--11310337 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11310275 GTTGCCTTAG
11310285 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
11310311 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
11310337 G
1 G
11310338 ATTAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:11310681 original size:26 final size:26
Alignment explanation
Indices: 11310650--11310705 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
11310640 TGGGTTGACT
*
11310650 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
*
11310676 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
11310702 TAAG
1 TAAG
11310706 ATCAGACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:11311944 original size:26 final size:26
Alignment explanation
Indices: 11311908--11311959 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11311898 GTTGACTTAG
11311908 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
11311934 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11311960 AATCAGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11312459 original size:26 final size:26
Alignment explanation
Indices: 11312410--11312461 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11312400 TTGGCTTAGT
* *
11312410 CATACGGAGTTCATTCCATGTCTAAG
1 CATACAGAGTTCATTCCATATCTAAG
11312436 CATACAGAGTTCATTCCCA-ATCTAAG
1 CATACAGAGTTCATT-CCATATCTAAG
11312462 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCATATCTAAG
Found at i:11312932 original size:26 final size:26
Alignment explanation
Indices: 11312902--11312954 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11312892 GTTGGCTTAG
11312902 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11312928 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11312954 G
1 G
11312955 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11315519 original size:26 final size:26
Alignment explanation
Indices: 11315489--11315538 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
11315479 GCTTAGGCCA
11315489 TACGGAGTTCATT-CCATGTCTAAGCT
1 TACGGAGTTCATTCCCA-GTCTAAGCT
11315515 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
11315539 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:11315910 original size:25 final size:26
Alignment explanation
Indices: 11315881--11315932 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
11315871 GATGACTTAG
*
11315881 GCATACGGAGTTCATCCCCA-TCTAA
1 GCATACGGAGTCCATCCCCAGTCTAA
* *
11315906 GCATATGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATCCCCAGTCTAA
11315932 G
1 G
11315933 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTCCATCCCCAGTCTAA
Found at i:11317759 original size:26 final size:26
Alignment explanation
Indices: 11317723--11317775 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11317713 GTTGCCTTAG
11317723 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
11317749 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
11317775 G
1 G
11317776 ATTAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:11318118 original size:26 final size:27
Alignment explanation
Indices: 11318087--11318143 Score: 89
Period size: 26 Copynumber: 2.1 Consensus size: 27
11318077 GTGGTTGACT
*
11318087 TAAGCATACGGAGTTC-ATCCCCAGTC
1 TAAGCATACAGAGTTCAATCCCCAGTC
*
11318113 TAAGCATACAGAGTTCAATTCCCAGTC
1 TAAGCATACAGAGTTCAATCCCCAGTC
11318140 TAAG
1 TAAG
11318144 ATCAGACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
26 15 0.54
27 13 0.46
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.25
Consensus pattern (27 bp):
TAAGCATACAGAGTTCAATCCCCAGTC
Found at i:11319382 original size:25 final size:26
Alignment explanation
Indices: 11319347--11319397 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
11319337 GTTGACTTAG
11319347 GCATACAGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
11319372 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11319398 AATCAGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11319877 original size:26 final size:26
Alignment explanation
Indices: 11319847--11319898 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11319837 TTGGCTTAGT
*
11319847 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACAGAGTTCATTCCCA-GTCTAAG
11319873 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
11319899 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:11320205 original size:26 final size:26
Alignment explanation
Indices: 11320169--11320221 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11320159 GTTGACTTAG
11320169 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
11320195 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11320221 G
1 G
11320222 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11320394 original size:26 final size:26
Alignment explanation
Indices: 11320364--11320416 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11320354 GTTGGCTTAG
*
11320364 GCATACGGAGCTCATTCC-ATGTCTAA
1 GCATACAGAGCTCATTCCTA-GTCTAA
*
11320390 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGCTCATTCCTAGTCTAA
11320416 G
1 G
11320417 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCTAGTCTAA
Found at i:11327030 original size:26 final size:26
Alignment explanation
Indices: 11326996--11327045 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
11326986 GACTTAGGCT
*
11326996 TACGGAGTTCA-TCCCTAGTCTAAGCA
1 TACGAAGTTCATTCCC-AGTCTAAGCA
11327022 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
11327046 ATCGGATCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:11327335 original size:159 final size:158
Alignment explanation
Indices: 11327090--11327522 Score: 469
Period size: 159 Copynumber: 2.7 Consensus size: 158
11327080 GACAGCACGT
* * * * * *
11327090 AGGGGGACCGGGCCAATCCCCCGGCTTACGCATTCTGCCTATCCGACCGGTTGAGCGCCCACACG
1 AGGGGGACCGGGCCAAT-CCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACG
* * * *
11327155 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGA-CAG
65 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCGGACCA-
** * * * *
11327218 AGGGTTGTGGCAACGGGACCGACAGCTCGTAG
128 A-GGTTCCGACAACAGGACCGACAGCACGCAG
* * *
11327250 AGGGGGACCGAGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCGCCCGCACGC
1 AGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGC
* * * **
11327315 TTGTTTCATGGGTTGACTTAGGTATACGGAGTTCATTCC-TAGTCTAAGATTAGACCGGATCCAA
66 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGACCAGACCGGA-CCAA
* *
11327379 GGTTCCGACAGCAGGATCGACAGCACGCAG
129 GGTTCCGACAACAGGACCGACAGCACGCAG
* * * * * * * *
11327409 GGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTC-TCCAGTCGACTGAGCGCCTGCACG
1 AGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGA-TCGGCTGAGCGCCCGCACG
11327473 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGA
65 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGA
11327523 ATAGGAGTTC
Statistics
Matches: 227, Mismatches: 40, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
158 6 0.03
159 201 0.89
160 18 0.08
161 2 0.01
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.23
Consensus pattern (158 bp):
AGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGC
TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGACCGGACCAAGG
TTCCGACAACAGGACCGACAGCACGCAG
Found at i:11328753 original size:26 final size:26
Alignment explanation
Indices: 11328724--11328776 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11328714 GTTGGCTTAG
11328724 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11328750 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11328776 G
1 G
11328777 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11328888 original size:13 final size:13
Alignment explanation
Indices: 11328870--11328894 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11328860 GCACTTTTTA
11328870 CCTCTCCGATCGG
1 CCTCTCCGATCGG
11328883 CCTCTCCGATCG
1 CCTCTCCGATCG
11328895 ACTGAGTGCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.48, G:0.20, T:0.24
Consensus pattern (13 bp):
CCTCTCCGATCGG
Found at i:11328972 original size:25 final size:26
Alignment explanation
Indices: 11328933--11328984 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
11328923 GTTGACTTAG
11328933 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
*
11328959 GCATATGGA-TTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11328984 G
1 G
11328985 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11329473 original size:26 final size:26
Alignment explanation
Indices: 11329443--11329495 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11329433 GTTGCCTTAG
*
11329443 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
11329469 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
11329495 G
1 G
11329496 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:11329805 original size:196 final size:195
Alignment explanation
Indices: 11329336--11329862 Score: 617
Period size: 196 Copynumber: 2.7 Consensus size: 195
11329326 AGGGTTACGA
* * * * * * *
11329336 CAGCAAGATCGACAGCACGTAGGGGGGATCGGGTCGGTCCCCGGCTTGTGCATTCTACCTCTCCG
1 CAGCAGGACCGACAGCACGCAGGGGGGA-CCGGTCGGTCCCCGACTTGCGCATTCTACCTCTTCG
* * * *
11329401 ACCGGCTAAGCACTCGCACGCTCGTTTCATGGGTTGCCTTAGGCATACAGAGTTCATTCCATGTC
65 ACCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
*
11329466 TAAGCATACAAAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGACAGCAGGACCA
130 TAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCAGGACCA
11329531 G
195 G
* * * ** ** ** *
11329532 TAGCAGGATCAACAGCACGCAGGGGGGACCGAACCAATCCCTAACTTGCGCATTCTACCTC-TCT
1 CAGCAGGACCGACAGCACGCAGGGGGGACCG-GTCGGTCCCCGACTTGCGCATTCTACCTCTTCG
* * * * *
11329596 AGTCGGTTGAGCGCTCGCACGCTCGTTTCGTAGGTTGGTTTAGGCATACAGAGTTCATTCCATTT
65 A-CCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
*** * * *
11329661 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGTAGGACG
129 CTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCAGGACC
11329726 AG
194 AG
* * *
11329728 CAGTAGGACCGACAGCACGCAGGGGGGACCAGGTCGGTCCCCGACTTGCACATTCTGCCTCTTCG
1 CAGCAGGACCGACAGCACGCAGGGGGGACC-GGTCGGTCCCCGACTTGCGCATTCTACCTCTTCG
* * ** * *
11329793 ACCGGCTGAGCGC-CTGCACGCCCGTTCCGTGGGTTGGCTTAGGCATAGGGTGTTCATTTCATGT
65 ACCGGCTGAGCGCTC-GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
11329857 CTAAGC
129 CTAAGC
11329863 CCCAGCCGGA
Statistics
Matches: 271, Mismatches: 55, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
195 5 0.02
196 262 0.97
197 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (195 bp):
CAGCAGGACCGACAGCACGCAGGGGGGACCGGTCGGTCCCCGACTTGCGCATTCTACCTCTTCGA
CCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCT
AAGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCAGGACCAG
Found at i:11330132 original size:709 final size:705
Alignment explanation
Indices: 11328547--11330203 Score: 1705
Period size: 709 Copynumber: 2.3 Consensus size: 705
11328537 CGTACGCTCG
* * * * * * * * * *
11328547 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATTAGATCAAACTAAGGGAT
1 TTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCCAATATAAGATCAGACCGAACTGAGGG-T
* * * * *
11328612 GTA-G-CAGCAGGATCGACAGCACGCTAGGAGGGATCGGGTCGATACCCGACTTGCGCCTTCTGC
65 -TACGAAAGCAGGATCGACAGCACG-TAGGGGGGATCGGGTCGATCCCCGACTTGTGCATTCTGC
* * * *
11328675 CTCTCC-GACCGACTGAGCGCCTGTACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCAT
128 CTCTCCGGACAG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
* **
11328739 TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGATGGTTACGGTAG
192 TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGACAG
* * **** ** * *
11328804 CAGGACCAGTAACAGGATCGACAGCACGCAGGGGGCATCGAGTTGATCCCCGGCTTGCACTTTTT
257 CAGGACCAGTAACAGGATCAACAGCACGCAGGGGGCACCGAACCAATCCCCAACTTGCACATTCT
* * * *
11328869 ACCTCTCCGATCGGCCTCTCCGATCGACTGAGTGCCCGTACTCTCGTTTCATGGGTTGACTTAGG
322 ACCTCTCAGATCGG-CTCT-CGA-CGAC---G-GCCCGCACGCTCGTTTCATAGGTTGACTTAGG
*
11328934 CATACGGAGTTCATCCTCAGTCTAAGCATATGGATTCATTCCCAGTCTAAGATCGGACCGGACCA
380 CATACAGAGTTCATCCTCAGTCTAAGCATATGGATTCATTCCCAGTCTAAGATCGGACCGGACCA
* * * ** *
11328999 AGGGTTGCGACAGTAGGATCGACAGCACGTAGAGGGGACTGGCCGATCCTCGGTTTACACCTTCT
445 AGGGTTGCGACAGTAGGATCGACAGCACGCAGAGGGGACAGGCCGATCCCCGACTTACACATTCT
* * * * *
11329064 GCCTCTCCGATCGGTTGAGCACCGGTATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
510 GCCTCTCCGACCGGCTGAGCACCGGCACGCCCATTCCGTGGGTTGGCTTAGGCATAGGGAGTTCA
*
11329129 TTCCATGACTAAACCATGACTAAACCCCAATCGGACTGAGGGTTGTGGCAGCGGGACCGGTAGCA
575 TT-C-T-A-T--A-CATGACTAAACCCCAACCGGACTGAGGGTTGTGGCAGCGGGACCGGTAGCA
* * * * **
11329194 TGCAAAGGGGGACCGAGCCGATCCTCGACTTGCGCATTATTCCTCTCCAACCGACTCAGCGCTTG
633 CGCAAAGGGGGACCGAGCCGATCCTCGACTTACACATTATGCCTCTCCAACCGACTCAGCGCCCG
* *
11329259 CACGCTCA
698 CACACGCA
** * *
11329267 TTTCGTGGGTTAACTTAGGCATACGGTGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTT
1 TTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCCAATATAAGATCAGACCGAACTGAGGGTT
* * * * *
11329332 ACGACAGCAAGATCGACAGCACGTAGGGGGGATCGGGTCGGTCCCCGGCTTGTGCATTCTACCTC
66 ACGAAAGCAGGATCGACAGCACGTAGGGGGGATCGGGTCGATCCCCGACTTGTGCATTCTGCCTC
* * * * * * *
11329397 TCC-GACCGGCTAAGCACTCGCACGCTCGTTTCATGGGTTGCCTTAGGCATACAGAGTTCATTCC
131 TCCGGA-CAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
** ** * *
11329461 ATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGACAGCAG
195 ATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGACAGCAG
* * * *
11329526 GACCAGTAGCAGGATCAACAGCACGCAGGGGGGACCGAACCAATCCCTAACTTGCGCATTCTACC
260 GACCAGTAACAGGATCAACAGCACGCAGGGGGCACCGAACCAATCCCCAACTTGCACATTCTACC
* * **
11329591 TCTCTAG-TCGG-T-T-GA-G-C-GCTCGCACGCTCGTTTCGTAGGTTGGTTTAGGCATACAGAG
325 TCTC-AGATCGGCTCTCGACGACGGCCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACAGAG
* * * * *
11329649 TTCATTC-CATTTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTG
389 TTCATCCTCA-GTCTAAGCATATGGA-TTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTG
* * * *
11329713 CGACAGTAGGACGAGCAGTAGGACCGACAGCACGCAGGGGGGACCAGGTCGGTCCCCGACTTGCA
452 CGACAGT---A-G-G-A-T-----CGACAGCACGCAGAGGGGA-CAGGCCGATCCCCGACTTACA
* * * *
11329778 CATTCTGCCTCTTCGACCGGCTGAGCGCCTGCACGCCCGTTCCGTGGGTTGGCTTAGGCATAGGG
504 CATTCTGCCTCTCCGACCGGCTGAGCACCGGCACGCCCATTCCGTGGGTTGGCTTAGGCATAGGG
* * * * *
11329843 TGTTCA-T-T-T-CATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCTGGACCGGTAGCAC
569 AGTTCATTCTATACATGACTAAACCCCAACCGGACTGAGGGTTGTGGCAGCGGGACCGGTAGCAC
* * * * ** * *
11329904 GCAGAGGGGGACTGGGCCGATCC-CTGACTTACACATTATGCCTCTTCGGCCGGCTCAGTGCCCG
634 GCAAAGGGGGACCGAGCCGATCCTC-GACTTACACATTATGCCTCTCCAACCGACTCAGCGCCCG
11329968 CACACGCA
698 CACACGCA
* * *
11329976 TTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCAATATAAGATC-GAACCGGACTGAGGGT
1 TTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCCAATATAAGATCAG-ACCGAACTGAGGGT
** * * *
11330040 TGTGAAAGCAGGATCGATAGCACGTAGGGGGGACTAGGCT-GATCCCCGACTTGTGCATTCTGCC
65 TACGAAAGCAGGATCGACAGCACGTAGGGGGGA-TCGGGTCGATCCCCGACTTGTGCATTCTGCC
* * * *
11330104 TCTCCGGTCAGCTGAGCGCCCACACGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAATTCATTC
129 TCTCCGGACAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
*
11330169 CATGTTTAAGCATACGGAGTTCATTCCCAGTCTAA
194 CATGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
11330204 AATTTTGAGA
Statistics
Matches: 779, Mismatches: 135, Indels: 57
0.80 0.14 0.06
Matches are distributed among these distances:
705 2 0.00
706 53 0.07
707 42 0.05
708 2 0.00
709 289 0.37
710 6 0.01
711 2 0.00
712 2 0.00
713 2 0.00
714 3 0.00
716 2 0.00
717 1 0.00
718 2 0.00
719 221 0.28
720 150 0.19
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (705 bp):
TTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCCAATATAAGATCAGACCGAACTGAGGGTT
ACGAAAGCAGGATCGACAGCACGTAGGGGGGATCGGGTCGATCCCCGACTTGTGCATTCTGCCTC
TCCGGACAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
TGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGACAGCAGG
ACCAGTAACAGGATCAACAGCACGCAGGGGGCACCGAACCAATCCCCAACTTGCACATTCTACCT
CTCAGATCGGCTCTCGACGACGGCCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACAGAGTT
CATCCTCAGTCTAAGCATATGGATTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGAC
AGTAGGATCGACAGCACGCAGAGGGGACAGGCCGATCCCCGACTTACACATTCTGCCTCTCCGAC
CGGCTGAGCACCGGCACGCCCATTCCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCTATACATG
ACTAAACCCCAACCGGACTGAGGGTTGTGGCAGCGGGACCGGTAGCACGCAAAGGGGGACCGAGC
CGATCCTCGACTTACACATTATGCCTCTCCAACCGACTCAGCGCCCGCACACGCA
Found at i:11330156 original size:158 final size:159
Alignment explanation
Indices: 11329732--11330169 Score: 443
Period size: 159 Copynumber: 2.8 Consensus size: 159
11329722 GACGAGCAGT
* * * *
11329732 AGGACCGACAGCACGCAGGGGGGACCAGG-TCGGTCCCCGACTTGCACATTCTGCCTCTTCGACC
1 AGGACCGATAGCACGCAGGGGGGACTAGGCT-GATCCCCGACTTGCACATTCTGCCTCTTCGGCC
* * * ** * * *
11329796 GGCTGAGCGCCTGCACGCCCGTTCCGTGGGTTGGCTTAGGCATAGGGTGTTCATT-TCATGTCTA
65 GGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCATATATA
* * **
11329860 AGCCCCAGCCGGACTGAGGGTTGTGGCAGC
130 AGACCCAACCGGACTGAGGGTTGTGAAAGC
* * * * * * *
11329890 TGGACCGGTAGCACGCAGAGGGGGACTGGGCCGATCCCTGACTTACACATTATGCCTCTTCGGCC
1 AGGACCGATAGCACGCAG-GGGGGACTAGGCTGATCCCCGACTTGCACATTCTGCCTCTTCGGCC
* * * * * * *
11329955 GGCTCAGTGCCCGCACACGCATTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCA-ATATA
65 GGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCATATATA
* *
11330019 AGATCGAACCGGACTGAGGGTTGTGAAAGC
130 AGACCCAACCGGACTGAGGGTTGTGAAAGC
* * ** * * *
11330049 AGGATCGATAGCACGTAGGGGGGACTAGGCTGATCCCCGACTTGTGCATTCTGCCTCTCCGGTCA
1 AGGACCGATAGCACGCAGGGGGGACTAGGCTGATCCCCGACTTGCACATTCTGCCTCTTCGGCCG
* * *
11330114 GCTGAGCGCCCACACGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAA-TTCATTCC
66 GCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAC-GAAGTTCATTCC
11330170 ATGTTTAAGC
Statistics
Matches: 221, Mismatches: 55, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
158 95 0.43
159 124 0.56
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
AGGACCGATAGCACGCAGGGGGGACTAGGCTGATCCCCGACTTGCACATTCTGCCTCTTCGGCCG
GCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCATATATAA
GACCCAACCGGACTGAGGGTTGTGAAAGC
Found at i:11331203 original size:159 final size:156
Alignment explanation
Indices: 11330943--11331403 Score: 480
Period size: 159 Copynumber: 2.9 Consensus size: 156
11330933 GACCACGCCG
* * ** * * *
11330943 AGGGTTGCGACAACATGATCGGCAGCACGCAGGGGGGACCGAGACAATCCCTGGCTTACGCATTC
1 AGGGTTGCGACAGCAGGATCAACAGCATGCA-GGGGGACCGAGTCGATCCCTGGCTTACGCATTC
* * * * *
11331008 TGCCTCTCCGGGCGGCTGAGTGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTC
65 TGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
*
11331073 ATTCCATGTCTAAGCCCCAGCCAGACCG
130 ATTCCATGTCTAAGCCCCA-CCAGACCA
* * * * *
11331101 AGGGTTGTGGCAGCGAGACCGAT-AACACGCA-G-AGGGGGATCGGGTCGATCCCTGGCTTGCGC
1 AGGGTTGCGACAGC-AG---GATCAACA-GCATGCAGGGGGACCGAGTCGATCCCTGGCTTACGC
* * * * *
11331163 ATTATGCCTCTCTGGCCGGCTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGA
61 ATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
** **
11331228 GTTCATTCCCA-GTCTACAATCGGACCAGACCA
126 GTTCATT-CCATGTCTA-AGCCCCACCAGACCA
* * *
11331260 AGGGTTGCGACAGCAGGATCAACAGCATGCAGGGGGGCCGAGTCGATCCCCGGCTTATGCATTCT
1 AGGGTTGCGACAGCAGGATCAACAGCATGCAGGGGGACCGAGTCGATCCCTGGCTTACGCATTCT
* ** * * * *
11331325 ACCTCTCCGGTTGGCTGAGCGCCTGTACGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCA
66 GCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
11331390 TTCCATGTCTAAGC
131 TTCCATGTCTAAGC
11331404 ATACGGTGTT
Statistics
Matches: 244, Mismatches: 48, Indels: 24
0.77 0.15 0.08
Matches are distributed among these distances:
155 6 0.02
156 9 0.04
157 89 0.36
158 13 0.05
159 111 0.45
160 7 0.03
161 3 0.01
162 6 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (156 bp):
AGGGTTGCGACAGCAGGATCAACAGCATGCAGGGGGACCGAGTCGATCCCTGGCTTACGCATTCT
GCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
TTCCATGTCTAAGCCCCACCAGACCA
Found at i:11331407 original size:26 final size:26
Alignment explanation
Indices: 11331376--11331427 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11331366 GTTGGCTTAG
*
11331376 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
*
11331402 GCATACGGTGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
11331428 TATCAGACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:11331560 original size:184 final size:183
Alignment explanation
Indices: 11331219--11332151 Score: 485
Period size: 184 Copynumber: 5.0 Consensus size: 183
11331209 GTTGACTTAG
* * * *
11331219 GCATACGGAGTTCATTCCCAGTCTACAATCGGACCAGACCAAGGGTTGCGACAGCAGGATCAACA
1 GCATACGGAGTTAATTCCCAGTCTACAATCAGACCAGACCAAGGGTTACGACAGCAAGATCAACA
* * * * * * *
11331284 GCATGCAGGGGGGCCGAGTCGATCCCCGGCTTATGCATTCTACCTCTCCGGTTGGCTGAGCGCCT
66 GCACGCAGGGGGGCCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCGATCGACTGAGCGCCC
* * * * *
11331349 GTACGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 GCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * ** * *
11331402 GCATACGGTGTTAATTCCCAGTCTA-ATATCAGACCGGACTTAGGGTTACGATAGCAAGATCGAC
1 GCATACGGAGTTAATTCCCAGTCTACA-ATCAGACCAGACCAAGGGTTACGACAGCAAGATCAAC
* * * * * * *
11331466 AGCACGTAGGGGGGACCGGGCCGATCCTCGTCTTACGCATTCTGCCTCTCTGATCGATTGAGCGC
65 AGCACGCAGGGGGG-CCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCGATCGACTGAGCGC
*
11331531 CCGCACACTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
129 CCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
** **** * * * *
11331586 GCCCCAGCCGGACCGAGGGTT-CC--TGT--AGT-AGGACC-GA-CAACGGG--A--TCAG-TAG
1 G---CATACGGA--GTTAATTCCCAGTCTACAATCA-GACCAGACCAA-GGGTTACGACAGCAAG
** * * * * * * *
11331638 --C-AC-GCA-G-AGGGGGATCGGGCTGATCCCCGGCTTATGCATTATGCCTCTCCGACCAGCCT
59 ATCAACAGCACGCAGGGGGGCCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCGATC-G--A
* * *
11331697 CTCCGGCTAGCTAAGCAACCACACGCTCGTTTCATGGGTTGGCTTAGGCATAC-GAAGTTCATTC
121 CT---G--AGC---GC--CCGCACACTCATTTCATGGGTTGGCTTAGGCATACAG-AGTTCATTC
11331761 CATGTCTAA
175 CATGTCTAA
* * * * * *
11331770 GCATATGGAGTTCATTCCCAGTCTA-AGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCAAT
1 GCATACGGAGTTAATTCCCAGTCTACA-ATCAGACCAGACCAAGGGTTACGACAGCAAGATCAAC
* * * * * * * * * *
11331834 AGCACGCAGGGGAGACCGGGTCAATCCCTGGCTTATGCATTCTGCCTCTCCGACCGGCTGAGTGC
65 AGCACGCAGGGG-GGCCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCGATCGACTGAGCGC
* * * *
11331899 CCGCACCCTTATTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAA
129 CCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * * ** * *
11331954 GCATTCGAAGTTTATT-CCATGTCTA-AGATC-GAACTGGATCGAAGGTTATAGTAGTAGGACCA
1 GCATACGGAGTTAATTCCCA-GTCTACA-ATCAG-ACCAGA-CCAAGG-----GT--T---A-CG
* * * * * *
11332016 ACAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCTCGGCTTACGCATTCTACCTCTCC
51 ACAGCAAGATCAACAGCACGCAGGGGGG-CCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCC
* * * * * * **
11332081 GACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
115 GATCGACTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
11332146 CTAA
180 CTAA
11332150 GC
1 GC
11332152 CCCAACCGAA
Statistics
Matches: 578, Mismatches: 113, Indels: 105
0.73 0.14 0.13
Matches are distributed among these distances:
171 32 0.06
172 7 0.01
173 1 0.00
174 4 0.01
175 2 0.00
176 1 0.00
177 1 0.00
178 2 0.00
179 8 0.01
180 2 0.00
181 6 0.01
182 6 0.01
183 76 0.13
184 222 0.38
185 13 0.02
186 7 0.01
187 5 0.01
188 2 0.00
189 8 0.01
190 3 0.01
191 1 0.00
192 2 0.00
193 1 0.00
194 5 0.01
195 2 0.00
196 123 0.21
197 36 0.06
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (183 bp):
GCATACGGAGTTAATTCCCAGTCTACAATCAGACCAGACCAAGGGTTACGACAGCAAGATCAACA
GCACGCAGGGGGGCCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCGATCGACTGAGCGCCC
GCACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:11331774 original size:26 final size:26
Alignment explanation
Indices: 11331744--11331796 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11331734 GTTGGCTTAG
11331744 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
11331770 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11331796 G
1 G
11331797 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11332499 original size:157 final size:159
Alignment explanation
Indices: 11332041--11332501 Score: 393
Period size: 159 Copynumber: 2.9 Consensus size: 159
11332031 GCACGCAGGG
* * * * * * * * * * * * *
11332041 GGGATCGGGTCGATCCTCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCCCG
1 GGGACCGGGTCGATCCCCGACTTACACATTATGCCTCTCCGGCCAGCTCAACGCCCGTACACTCG
* * * *
11332106 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCAAGGGTC
66 TTTCGTGGGTTGGCTTA-GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTT
* * * *
11332171 ATGGC-AGTGGGACCGATAGCACGTAAAGA
130 GTGGCAAGTAGGACCAACAGCACGTAAAGA
* *
11332200 GGGACCGGGTCGATCCCCGACTTACACATTATGCCTCTTCGGCCAGCTCAATGCCCGTACACTCG
1 GGGACCGGGTCGATCCCCGACTTACACATTATGCCTCTCCGGCCAGCTCAACGCCCGTACACTCG
* * * ** *
11332265 TTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCCA-CTCTAAG-ATCAGACCGGATCGAGGG
66 TTTCGTGGGTTGGCTT-AGCATACGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGACCGAGGG
* * *
11332328 TTG-CG-ATAGTAGGACCAACAGCAGGT-AGGA
128 TTGTGGCA-AGTAGGACCAACAGCACGTAAAGA
* * * * ** * * * **
11332358 GGGACCGGGTCGATCCTCGGCTTGCACATT-TAGGCTCTCCGG-TTGACTGAGCGCCTGT-TGCT
1 GGGACCGGGTCGATCCCCGACTTACACATTAT-GCCTCTCCGGCCAG-CTCAACGCCCGTACACT
11332420 CGTTTCGTGGGTTGGCTTAGCAGTACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGG
64 CGTTTCGTGGGTTGGCTTAGCA-TACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGG
11332485 TTGTGGCAAG-AGGACCA
128 TTGTGGCAAGTAGGACCA
11332502 GCAACAGGAT
Statistics
Matches: 238, Mismatches: 52, Indels: 26
0.75 0.16 0.08
Matches are distributed among these distances:
156 7 0.03
157 61 0.26
158 54 0.23
159 112 0.47
160 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
GGGACCGGGTCGATCCCCGACTTACACATTATGCCTCTCCGGCCAGCTCAACGCCCGTACACTCG
TTTCGTGGGTTGGCTTAGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTG
TGGCAAGTAGGACCAACAGCACGTAAAGA
Found at i:11332661 original size:26 final size:26
Alignment explanation
Indices: 11332627--11332676 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
11332617 GACTTAGGAT
11332627 TACGCAGTTCA-TCCCTAGTCTAAGCA
1 TACGCAGTTCATTCCC-AGTCTAAGCA
*
11332653 TACGGAGTTCATTCCCAGTCTAAG
1 TACGCAGTTCATTCCCAGTCTAAG
11332677 ATCGGACTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGCAGTTCATTCCCAGTCTAAGCA
Found at i:11334244 original size:12 final size:12
Alignment explanation
Indices: 11334227--11334261 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
11334217 AAGGGTTACG
11334227 GCAGCAGGACCA
1 GCAGCAGGACCA
*
11334239 GCAGCAAGACCA
1 GCAGCAGGACCA
*
11334251 GCAGTAGGACC
1 GCAGCAGGACC
11334262 GACAGCACGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.34, C:0.31, G:0.31, T:0.03
Consensus pattern (12 bp):
GCAGCAGGACCA
Found at i:11334546 original size:26 final size:26
Alignment explanation
Indices: 11334516--11334571 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
11334506 TGGGTTGACT
11334516 TAGGCATACAGAGTTCATCCCCAGTC
1 TAGGCATACAGAGTTCATCCCCAGTC
* * *
11334542 TAGGCATACGGAGTTCATTCCCATTC
1 TAGGCATACAGAGTTCATCCCCAGTC
11334568 TAGG
1 TAGG
11334572 ATCAAACCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATCCCCAGTC
Found at i:11334706 original size:184 final size:185
Alignment explanation
Indices: 11334357--11334717 Score: 453
Period size: 184 Copynumber: 2.0 Consensus size: 185
11334347 TGGATTGGCT
** * **
11334357 TAGGCATACGGAGTTCATTCCATGTCTAAGCCACAACTGGACCGAGGGTTGTGGCAGCAGGATCG
1 TAGGCATACGGAGTTCATTCCATGTCTAAGCCACAACCAGACCGAAGGTTACGGCAGCAGGATCG
* * * * * *
11334422 ACAGCACGCAGAGGGGGATCGGGCTAATCCCCGGCTTACGCATTTTGCCTTTCCGGCTAGCTGAG
66 ACAGCACGCAGAGGGGGACCAGGCCAATCCCCGGCTTACGCAATCTGCCTCTCCGGCTAGCTGAG
* *
11334487 CGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTC
131 CGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTC
* * *
11334542 TAGGCATACGGAGTTCATTCCCAT-TCTAGGATCA-AACCAGACCGAAGGTTACGGTAGCAGGAT
1 TAGGCATACGGAGTTCATT-CCATGTCTAAG-CCACAACCAGACCGAAGGTTACGGCAGCAGGAT
*
11334605 CAGA-AGCACGCAGA-GGGGACCAGGCCGATCCCCGGCTTACGCAATCTGCCTCTCCGG-TAAGC
64 C-GACAGCACGCAGAGGGGGACCAGGCCAATCCCCGGCTTACGCAATCTGCCTCTCCGGCT-AGC
* * * **
11334667 TGAGTGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
127 TGAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCAT
11334718 TCCATGCCTA
Statistics
Matches: 150, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
183 1 0.01
184 83 0.55
185 58 0.39
186 8 0.05
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.22
Consensus pattern (185 bp):
TAGGCATACGGAGTTCATTCCATGTCTAAGCCACAACCAGACCGAAGGTTACGGCAGCAGGATCG
ACAGCACGCAGAGGGGGACCAGGCCAATCCCCGGCTTACGCAATCTGCCTCTCCGGCTAGCTGAG
CGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTC
Found at i:11334939 original size:26 final size:26
Alignment explanation
Indices: 11334887--11334939 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11334877 GTTGACTTAG
* *
11334887 GCATACGGAGTTCATCCCCAATTTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
11334913 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
11334939 G
1 G
11334940 ATCAAACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:11335986 original size:26 final size:26
Alignment explanation
Indices: 11335950--11336002 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11335940 GTTGACTTTG
* *
11335950 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
*
11335976 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
11336002 G
1 G
11336003 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:11336448 original size:483 final size:483
Alignment explanation
Indices: 11335542--11336513 Score: 1827
Period size: 483 Copynumber: 2.0 Consensus size: 483
11335532 GTTTGCTGCT
11335542 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTCCAGTT
1 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTCCAGTT
*
11335607 TGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACCTCTACTAAATTT
66 CGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACCTCTACTAAATTT
**
11335672 GGGGACAAAAGGCTTTCTAAAAAAATTTTAAAAAATGTGGAACTGCAAAAAGTTTCAAGAATCAT
131 GGGGACAAAAGGCTTTCTAAAAAAATTTTAAAAAATACGGAACTGCAAAAAGTTTCAAGAATCAT
11335737 GAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATG
196 GAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATG
*
11335802 AATTTCCAAGCCATAAAAATTTCATTGGCATGGTAGAAATATGAAGATGTGCTTGAACCCACATG
261 AATTTACAAGCCATAAAAATTTCATTGGCATGGTAGAAATATGAAGATGTGCTTGAACCCACATG
* *
11335867 CCACTCGTTCGATTCTCGGCTTGCGCATCCTGCCTCTTTGGTCGGCTTGAGCGCCCACACGCGCA
326 CCACTCGTTCGATTCTCGGCTTGCGCATCCTGCCTCTTTGGTCGGCTTAAGCACCCACACGCGCA
11335932 TTTCGTGGGTTGACTTTGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
391 TTTCGTGGGTTGACTTTGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
*
11335997 CCTAAGATCGGATCGGACCGAGGGTTGA
456 CCTAAGATCGGATCAGACCGAGGGTTGA
11336025 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTCCAGTT
1 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTCCAGTT
11336090 CGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACCTCTACTAAATTT
66 CGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACCTCTACTAAATTT
11336155 GGGGACAAAAGGCTTTCTAAAAAAATTTTAAAAAATACGGAACTGCAAAAAGTTTCAAGAATCAT
131 GGGGACAAAAGGCTTTCTAAAAAAATTTTAAAAAATACGGAACTGCAAAAAGTTTCAAGAATCAT
11336220 GAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATG
196 GAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATG
*
11336285 AATTTACAAGCCATAAAAATTTCATTGGCATGGTAGACATATGAAGATGTGCTTGAACCCACATG
261 AATTTACAAGCCATAAAAATTTCATTGGCATGGTAGAAATATGAAGATGTGCTTGAACCCACATG
* * * *
11336350 CCACTCGTTCGATTCTCGGCTTGCGCATCCTGCCTCTTTGGTCGGCTTAAGCATCCGCACGCTCG
326 CCACTCGTTCGATTCTCGGCTTGCGCATCCTGCCTCTTTGGTCGGCTTAAGCACCCACACGCGCA
11336415 TTTCGTGGGTTGACTTTGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
391 TTTCGTGGGTTGACTTTGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
*
11336480 TCTAAGATCGGATCAGACCGAGGGTTGA
456 CCTAAGATCGGATCAGACCGAGGGTTGA
11336508 AGTAGC
1 AGTAGC
11336514 AAGATCGGTG
Statistics
Matches: 476, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
483 476 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.28
Consensus pattern (483 bp):
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTCCAGTT
CGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACCTCTACTAAATTT
GGGGACAAAAGGCTTTCTAAAAAAATTTTAAAAAATACGGAACTGCAAAAAGTTTCAAGAATCAT
GAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATG
AATTTACAAGCCATAAAAATTTCATTGGCATGGTAGAAATATGAAGATGTGCTTGAACCCACATG
CCACTCGTTCGATTCTCGGCTTGCGCATCCTGCCTCTTTGGTCGGCTTAAGCACCCACACGCGCA
TTTCGTGGGTTGACTTTGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
CCTAAGATCGGATCAGACCGAGGGTTGA
Found at i:11336469 original size:26 final size:26
Alignment explanation
Indices: 11336433--11336485 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11336423 GTTGACTTTG
*
11336433 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
11336459 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11336485 G
1 G
11336486 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11337349 original size:26 final size:26
Alignment explanation
Indices: 11337313--11337363 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11337303 GTTGACTTAG
11337313 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
* *
11337339 GCATATGGAGTTCATTCCCAGTCTA
1 GCATATAGAGTTCATCCCCAGTCTA
11337364 GGATTGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCCAGTCTAA
Found at i:11338555 original size:26 final size:26
Alignment explanation
Indices: 11338518--11338570 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11338508 GTTGGCTTAG
11338518 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
11338544 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11338570 G
1 G
11338571 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11345639 original size:26 final size:26
Alignment explanation
Indices: 11345603--11345655 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11345593 GTTGGCTTAG
* *
11345603 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
11345629 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11345655 G
1 G
11345656 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11346121 original size:381 final size:381
Alignment explanation
Indices: 11345431--11346127 Score: 938
Period size: 381 Copynumber: 1.8 Consensus size: 381
11345421 GCCCATTTCA
* *
11345431 TGGGTTGGCTTAGGCATAGGGAGTCCATTCCATGTGTAAGCCCCAGTCGGACCGAGGGTTGTGGT
1 TGGGTTGGCTTAGGCATAGGGAGTCCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGC
* * * * * * * *
11345496 AGCAGGATCGGCAGCACGTAGAGGGGGACCGAGCCGATCCTCAGCTTGTGCATTGTGCCTCTCCG
66 AGCAGGACCAGCACCACGCAGAGGGGGACCGAGCCAATCCCCAGCTTGCGCATTATGCCTCTCCG
* ** *
11345561 ATCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTC
131 ATCGACTCAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTC
* ** *
11345626 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTACGATAGCAGGATCG
196 TAAGCATACAGAGTTCATTCCCAGTATAAGATCAAACCGAACCAAGGGTTACGACAGCAGGATCG
* * * *
11345691 ACAGCATGCAAGGGGGATCGGGCTGATCCCTGGCTTACGTATTCTGCCTCTCTGGCTAGTTGAGT
261 ACAGCACGCAAGGGGGACCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTCTGGCTAGTTGAGT
11345756 GCCTGCATGCCCGTTTCATGGGTTGGCTTTGGCTGAGCGCCCACATGCCCGTTTTG
326 GCCTGCATGCCCGTTTCATGGGTTGGCTTTGGCTGAGCGCCCACATGCCCGTTTTG
* * * *
11345812 TGGGTTGTCTTAGGCATAGGGAGTTCATTTCATGTCTAAGCCCCAG-CTGGACTGAGGGTTGTGG
1 TGGGTTGGCTTAGGCATAGGGAGTCCATTCCATGTCTAAGCCCCAGTC-GGACCGAGGGTTGTGG
** * * *
11345876 CAGTGGGACCAGCACCACGCAGAGGGGGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCC
65 CAGCAGGACCAGCACCACGCAGAGGGGGACCGAGCCAATCCCCAGCTTGCGCATTATGCCTCTCC
* * * *
11345941 G-GCTGGCTCAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATG
130 GATC-GACTCAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATG
* * * *
11346005 TCTAAGCATA-AGGAGTTCATTCCCAGTATAAGATTAAACCGAACCGAGGGTTGC-AGCAGTAGG
194 TCTAAGCATACA-GAGTTCATTCCCAGTATAAGATCAAACCGAACCAAGGGTTACGA-CAGCAGG
*
11346068 ATCGACAGCACGC-AGGAGGGACCGGGCCT-ATCCCCGGCTTGCGCATTCTGCCTCTCTGGC
257 ATCGACAGCACGCAAGG-GGGACCGGG-CTGATCCCCGGCTTACGCATTCTGCCTCTCTGGC
11346128 CGGTTGAGCA
Statistics
Matches: 270, Mismatches: 40, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
380 7 0.03
381 261 0.97
382 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (381 bp):
TGGGTTGGCTTAGGCATAGGGAGTCCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGC
AGCAGGACCAGCACCACGCAGAGGGGGACCGAGCCAATCCCCAGCTTGCGCATTATGCCTCTCCG
ATCGACTCAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTC
TAAGCATACAGAGTTCATTCCCAGTATAAGATCAAACCGAACCAAGGGTTACGACAGCAGGATCG
ACAGCACGCAAGGGGGACCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTCTGGCTAGTTGAGT
GCCTGCATGCCCGTTTCATGGGTTGGCTTTGGCTGAGCGCCCACATGCCCGTTTTG
Found at i:11346731 original size:26 final size:26
Alignment explanation
Indices: 11346695--11346746 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11346685 TGGCTTAGGC
*
11346695 ATACGGAGTTCATCCCCAGTCTAAGA
1 ATACGAAGTTCATCCCCAGTCTAAGA
*
11346721 ATACGAAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATCCCCAGTCTAAGA
11346747 TTAGACCAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGA
Found at i:11347085 original size:26 final size:26
Alignment explanation
Indices: 11347036--11347088 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11347026 TTTGACTTTT
* *
11347036 GCATACGGAGTTCGTTCTATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
11347062 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
11347088 G
1 G
11347089 ATCAAACCGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:11347120 original size:343 final size:342
Alignment explanation
Indices: 11345786--11347407 Score: 1116
Period size: 367 Copynumber: 4.6 Consensus size: 342
11345776 GGTTGGCTTT
* * * * *
11345786 GGCTGAGCGCCCACATGCCCGTTTTGTGGGTTGTCTTAGGCATAGGGAGTTCATTTCATGTCTAA
1 GGCTGAGCACCCACACGCCCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCA-TTCATGTCTAA
* * * * ** * **
11345851 GCCCCAGCTGGACTGAGGGTTGTGGCAGTGGGAC-CAGCACCACGCAGAGGGGGATCGGGCCAAT
65 GCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGACACTGCAGCACATAGAGGGGGACCGGGCTGAT
* * * *
11345915 CCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGCGCCCGTACGCTCGTTTCATGGGTTGGC
130 CCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTCAGAGCCCGCACGCTCGTTTCATGGGTTGGC
* * *
11345980 TTAGGCATACAAAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGTATAAGATTAAACC
195 TTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATCAAACC
* * * * * * * *
11346045 GAACCGAGGGTTGCAGCAGTAGGATCGACAGCACGCAGGAGGGACCGGGCCTATCCCCGGCTTGC
260 GAACCAAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGACTGGGCCGAT-CCCGACTTGC
11346110 GCATTCTGCCTCTCTGGCC
324 GCATTCTGCCTCTCTGGCC
* * * *
11346129 GGTTGAGCACCCACACGCTCATTTTGTGGGTTGGCTTAAGCATACGAAGTTCATTCCCA-GTCTA
1 GGCTGAGCACCCACACGCCCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATT--CATGTCTA
** * * * ** * ** * *
11346193 AG-ATCGGATCGGACTGAGGGTTGTGGCAGCAAGATCGACTGCA-CGC-GGGA-GGGGATC-GGA
64 AGCCCCAGCT-GGACCGAGGGTTGTGGCAGCGGGA-C-ACTGCAGCACATAGAGGGGGACCGGGC
* * * * * *
11346253 TCGAT-CCCGGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCGCTCGCACGCTTGTTTCATGGG
126 T-GATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTCAGAGCCCGCACGCTCGTTTCATGGG
* * * * *
11346317 TTGGCTTAGGCATACAGAGTTCCTTCCACGTCTAAGTATACGGAGCTCATTCCTAGTATAAGATC
190 TTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATC
* * * *
11346382 AGACCGAACCGAGGGTTGCAACAGCAGGACCAACAGCAGGATCTG-TAGCACGTAGGGGGGA-TC
255 AAACCGAACCAAGGGTT-----A-C-GG-----CAGCAGGATC-GACAGCACGCAGGGGGGACT-
** * * * * * *
11346445 GAACCGATCCCCAGGTTGCACATTTTGCCTCTCCGACC
306 GGGCCGATCCCGA-CTTGCGCATTCTGCCTCTCTGGCC
* * * * *
11346483 GGTTGAGCACCCGCACACTCATTTTGTGGGTTGGCTTAGCCATACGGAGTTCATTCTATGTCTAA
1 GGCTGAGCACCCACACGCCCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTC-ATGTCTAA
* * *
11346548 GCCCCAGTTGGATCGAGGGTTGTGGCAGCAGGATCGACAATGGGATCAGCAGCATGCAGAGGGGG
65 GCCCCAGCTGGACCGAGGGTTGTGGCAGC-GG---GACACT--G--CAGCA-CAT--AGAGGGGG
* *** * * *
11346613 ACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCTAACCGGCTAAGCGCCCGCACGCTCGTTT
119 ACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTCAGAGCCCGCACGCTCGTTT
* * * * * *
11346678 CGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCA-GTCTAAGAATACGAAGTTCATTCCCAGTC
184 CATGGGTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTA
* * * * *
11346742 TAAGATTAGACC-AGATCAAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACTGGGCCG
248 TAAGATCAAACCGA-ACCAAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGACTGGGCCG
11346806 ATCTCCGACTTGCGCATTCTGCCTCTCTGGCC
312 ATC-CCGACTTGCGCATTCTGCCTCTCTGGCC
* ** * * * *
11346838 GACTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCGATGTCTAA
1 GGCTGAGCACCCACACGCCCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTC-ATGTCTAA
* *
11346903 GCCCCAGCTGAACCGAGGGTTGTGACAGCGGGAC-CTGCAGCACATAGAGGGGGACCGGGCTGAT
65 GCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGACACTGCAGCACATAGAGGGGGACCGGGCTGAT
* * * * * * * * ** * * * *
11346967 CCCTGACTTGCGTATTATGCCTCTTCGGTCGATTCCGAGCCCGTACGCTTATGTCGTGGTTTGAC
130 CCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTCAGAGCCCGCACGCTCGTTTCATGGGTTGGC
** * * * *
11347032 TTTTGCATACGGAGTTCGTTCTATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACC
195 TTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATCAAACC
*
11347097 GTACCAAGGGTTACGGTAGCAGGACCAACAGCAGGATCGACAGCAGGATCGACAGCACGTAGGGG
260 GAACCAAGGG-T----TA-C-GG-----CAGCAGGATCG--A-CA-G--C-AC-G--C--AGGGG
* * *
11347162 GGA-TCGGGCTGATCCCTAGCTTGCGCATTCTGCCTCTCCGGCC
301 GGACT-GGGCCGATCCCGA-CTTGCGCATTCTGCCTCTCTGGCC
* * * ** * ** * *
11347205 AGCTGAGCCCCCGCACGATCGTTTCATGGGTTGGCTTAGGCATAGGGAGTGCATTCCATGTCTAA
1 GGCTGAGCACCCACACGCCCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATT-CATGTCTAA
* * * * * * * ** ***
11347270 GCCCAAACCGAACCGAGGGTTGTGGTAGCGGGAC-CAGTAGCACGCAGAGGGGGACTAAGCTGAT
65 GCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGACACTGCAGCACATAGAGGGGGACCGGGCTGAT
* ** * * * * *
11347334 CCTCGGCTTGCGCATTATGCCTCTCCGGCCGGTTCATCA-CCCGAACGCTCATTTCGTGGGTTGA
130 CCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTCA-GAGCCCGCACGCTCGTTTCATGGGTTGG
11347398 CTTAGGCATA
194 CTTAGGCATA
11347408 TGGAGCTCAT
Statistics
Matches: 1008, Mismatches: 195, Indels: 128
0.76 0.15 0.10
Matches are distributed among these distances:
342 133 0.13
343 205 0.20
344 6 0.01
345 5 0.00
346 9 0.01
348 3 0.00
349 2 0.00
350 2 0.00
351 3 0.00
352 1 0.00
353 4 0.00
354 124 0.12
355 144 0.14
356 6 0.01
357 2 0.00
358 5 0.00
359 1 0.00
360 3 0.00
361 3 0.00
362 3 0.00
363 1 0.00
365 3 0.00
366 14 0.01
367 321 0.32
368 5 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (342 bp):
GGCTGAGCACCCACACGCCCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCATGTCTAAG
CCCCAGCTGGACCGAGGGTTGTGGCAGCGGGACACTGCAGCACATAGAGGGGGACCGGGCTGATC
CCCGGCTTGCGCATTATGCCTCTCCGGCCGACTCAGAGCCCGCACGCTCGTTTCATGGGTTGGCT
TAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATCAAACCG
AACCAAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGACTGGGCCGATCCCGACTTGCGC
ATTCTGCCTCTCTGGCC
Found at i:11347145 original size:12 final size:12
Alignment explanation
Indices: 11347114--11347153 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
11347104 GGGTTACGGT
* *
11347114 AGCAGGACCAAC
1 AGCAGGATCGAC
11347126 AGCAGGATCGAC
1 AGCAGGATCGAC
11347138 AGCAGGATCGAC
1 AGCAGGATCGAC
11347150 AGCA
1 AGCA
11347154 CGTAGGGGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.38, C:0.28, G:0.30, T:0.05
Consensus pattern (12 bp):
AGCAGGATCGAC
Found at i:11347560 original size:158 final size:159
Alignment explanation
Indices: 11347181--11347587 Score: 444
Period size: 159 Copynumber: 2.6 Consensus size: 159
11347171 TGATCCCTAG
* * * *
11347181 CTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCCCCCGCACGATCGTTTCATGGGTTGGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGAACGCTCGTTTCATGGGTTGGCTTAGGC
* * * * *
11347246 ATAGGGAGTGCATTCCATGTCTAAGCCCAAACCGAACCGAGGGTTGTGGTAGCGGGACCAGTAGC
66 ATACGGAGTGCATTCCATATCTAAGACCAAACCGAACCGAGGGTTGCGGTAGCAGGACCAGTAGC
* * *
11347311 ACGCAGAGGGGGACTAAGCTGATCCTCGG
131 ACACAGAGGGGGACTAAGCCGATCCTCGA
* * * * * * *
11347340 CTTGCGCATTATGCCTCTCCGGCCGGTTCATCACCCGAACGCTCATTTCGTGGGTTGACTTAGGC
1 CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGAACGCTCGTTTCATGGGTTGGCTTAGGC
* * ** * **
11347405 ATATGGAGCT-CATTCC-TAATCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGA-TTGAT
66 ATACGGAG-TGCATTCCAT-ATCTAAGACCAAACCGAACCGAGGGTTGCGGTAGCAGGACCAG-T
* *
11347467 AGCACACAG-GGGGGACTAGGCCGGTCCTCGA
128 AGCACACAGAGGGGGACTAAGCCGATCCTCGA
* * * *
11347498 CTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGAACGCTCGTTTCATGGGTTGGCTTAGGC
* * *
11347563 ATACGGAGTTCACTCCATGTCTAAG
66 ATACGGAGTGCATTCCATATCTAAG
11347588 CATACGAAGT
Statistics
Matches: 202, Mismatches: 41, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
157 1 0.00
158 92 0.46
159 108 0.53
160 1 0.00
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGAACGCTCGTTTCATGGGTTGGCTTAGGC
ATACGGAGTGCATTCCATATCTAAGACCAAACCGAACCGAGGGTTGCGGTAGCAGGACCAGTAGC
ACACAGAGGGGGACTAAGCCGATCCTCGA
Found at i:11352571 original size:170 final size:169
Alignment explanation
Indices: 11352251--11352722 Score: 496
Period size: 170 Copynumber: 2.8 Consensus size: 169
11352241 GTTACGGTAG
* * * * * * * *
11352251 CAGGATCGATAGCACGCAGGGGGGATCGAGTTGGTCCCCGACTTGTGCATTCTACCTCTCCGACC
1 CAGGATCGACAGCACACAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACC
* * * *
11352316 GGCTGAGTGCCCGCATGCTTATTTCATGGGCTGGCTTAGGCAAACGGAGTTTATTCCCAGTCTAA
66 GGCTGAGTGCCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCA-TCCCAGTCTAA
* * * *
11352381 GATCGAACTAGACTGAGGGTTGTGGTAGCAGGACCAGTAA
130 GACCGAACCAGACCGAGGGTTGTGGTAGCAGGACCAATAA
* * *
11352421 CAGGATAGACAGCACACAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGTCC
1 CAGGATCGACAGCACACAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACC
** * * * *
11352486 GGCTGAGCACCTGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCATGTTTAA
66 GGCTGAGTGCCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCA-GTCTAA
* * * * *
11352551 GCCCTAGCCGGACCGAGGGTTGTGGTAGCAGGACCAATAG
130 GACCGAACCAGACCGAGGGTTGTGGTAGCAGGACCAATAA
** * * * * ** * *
11352591 TGGGATCGGCAGCACACATAGGGGGACCGAG-CTGATCCCCAGCTTACGGTTTATGCCTCTCCGG
1 CAGGATCGACAGCACACA-GGGGGGACCGAGTC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGA
* * * *
11352655 CCGGCCGAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATGCGGAGTTCATCCCCAGTCT
64 CCGGCTGAGTGCCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-CCCAGTCT
11352720 AAG
128 AAG
11352723 CATATAGAGT
Statistics
Matches: 246, Mismatches: 52, Indels: 7
0.81 0.17 0.02
Matches are distributed among these distances:
169 5 0.02
170 149 0.61
171 88 0.36
172 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (169 bp):
CAGGATCGACAGCACACAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACC
GGCTGAGTGCCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCAGTCTAAG
ACCGAACCAGACCGAGGGTTGTGGTAGCAGGACCAATAA
Found at i:11353007 original size:159 final size:158
Alignment explanation
Indices: 11352844--11353250 Score: 397
Period size: 158 Copynumber: 2.6 Consensus size: 158
11352834 CCGGCTGAGT
* * *
11352844 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCAGC
1 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCAGC
* * * *
11352909 CAGATTGAGGGTTATGGTAGCGGGATCGATAGCACGTAGAGAGGGACCAGGCCGAG-CCTCGGCT
66 CAGATCGAGGGTTGTGGTAGCAGGATCGATAGCACGTAGAG-GGGACCAGGCCG-GTCCTCAGCT
* *
11352973 TGCACATTATGCCTATCCGACCAGCTCAAC
129 TACACATTATGCCTATACGACCAGCTCAAC
* * * ** *
11353003 GCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCA-GTCTAAG-ATCAG
1 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCTCAG
* * ** * * * * * *
11353066 ATCAGACCGAGGGTTGCAGCAGTAGGATCGATAGCACGTAGCGGGTATCAGGTCGGTCCTCAGCT
65 -CCAGATCGAGGGTTGTGGTAGCAGGATCGATAGCACGTAGAGGGGACCAGGCCGGTCCTCAGCT
** * * * * * * **
11353131 TACGTATTCTGCCTCTACGATCGGTTGAGT
129 TACACATTATGCCTATACGACCAGCTCAAC
* * * *
11353161 GCCTGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAAC
1 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCAGC
*
11353226 CGGATCGAGGGTTGTGGTAGCAGGA
66 CAGATCGAGGGTTGTGGTAGCAGGA
11353251 CCAGCAACAG
Statistics
Matches: 191, Mismatches: 52, Indels: 11
0.75 0.20 0.04
Matches are distributed among these distances:
157 4 0.02
158 104 0.54
159 80 0.42
160 3 0.02
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (158 bp):
GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCAGC
CAGATCGAGGGTTGTGGTAGCAGGATCGATAGCACGTAGAGGGGACCAGGCCGGTCCTCAGCTTA
CACATTATGCCTATACGACCAGCTCAAC
Found at i:11353398 original size:26 final size:26
Alignment explanation
Indices: 11353362--11353411 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
11353352 GTTGACTTAG
*
11353362 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
11353388 GCATACAGAGTTCATTCTCAGTCT
1 GCATACAGAGTTCATCCCCAGTCT
11353412 GAGATCAAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11353645 original size:671 final size:667
Alignment explanation
Indices: 11352469--11353731 Score: 1581
Period size: 671 Copynumber: 1.9 Consensus size: 667
11352459 CGGCTTGCGC
* *
11352469 ATTCTGCCTCTCCGTCCGGCTGAGCACCTGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
1 ATTCTGCCTCTACGTCCGGCTGAGCACCTGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGA
* * * * ***
11352534 GTTCATCCCATGTTTAAGCCCTAGCCGGACCGAGGGTTGTGGTAGCAGGACCAATAGTGGGATCG
66 GTTCATCCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGTAGCAGGACCAACAACAGGATCG
**
11352599 GCAGCACACATAGGGGGACCGAGCTGATCCCCAGCTTACGGTTTATGCCTCTCCGGCCGGCCGAG
131 GCAGCACACATAGGGGGACCGAGCTGATCCCCAGCTTACGAATTATGCCTCTCCGGCCGGCCGAG
** * * *
11352664 TGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATGCGGAGTTCATCCCCAGTCTAAGCATATA
196 CACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACA
* *** * * * * *
11352729 GAGTTCATTCCTAGTCTAAGATCGGATCGAGGGTTGTGGCAGTAGGATCGACAGCATGCTGGGGG
261 GAGTTCATTCCTAGTCTAAGATCAGATCGAGGGTTGCAACAGCAGGATCGACAGCACGCAGCGAG
* * *
11352794 GACCGGGCCGATCCCCGACTTGCACATTCTACCTCTCTGGCCGGCTGAGTGCCCGCACGCCCGTT
326 GACCGGGCCGATCCCCGACTTACACAATCTACCTCTCTGGCCGGCTGAGCGCCCGCACGCCCGTT
* **
11352859 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCAGCCAGATTGAGGGTTAT
391 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCAACCAGACCGAGGGTTAT
* *
11352924 GGTAGCGGGATCGATAGCACGTAGAGAGGGACCAGGCCGAGCCTCGGCTTGCACATTATGCCTAT
456 GGCAGCGGGATCGACAGCACGTAGAGAGGGACCAGGCCGAGCCTCGGCTTGCACATTATGCCTAT
*
11352989 CCGACC-AGCTCAACGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCC
521 CCGACCGA-CTCAACGCCCGAACACTCATTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCC
11353053 AGTCTAAGATCAGATCAGACCGAGGGTTGCAGCAGTAGGATCGATAGCACGTAGCGGGTATCAGG
585 AGTCTAAGATCAGATCAGACCGAGGGTTGCAGCAGTAGGATCGATAGCACGTAGCGGGTATCAGG
11353118 TCGGTCCTCAGCTTACGT
650 TCGGTCCTCAGCTTACGT
* **
11353136 ATTCTGCCTCTACGAT-CGGTTGAGTGCCTGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGG
1 ATTCTGCCTCTACG-TCCGGCTGAGCACCTGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGG
* * * *
11353200 AGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTGTGGTAGCAGGACCAGCAACAGGATT
65 AGTTCATCCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGTAGCAGGACCAACAACAGGATC
* * * * * * * * * **
11353265 GGCAGTA-AGCA-GGGGGGACCGGGCTGATTCTCGGCTTACGAATTCTGCCTCTTCGGTCGGTTG
130 GGCAGCACA-CATAGGGGGACCGAGCTGATCCCCAGCTTACGAATTATGCCTCTCCGGCCGGCCG
**
11353328 AGCACCCACACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
194 AGCACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
* *
11353393 CAGAGTTCATT-CTCAGTCTGAGATCAAACCAGATCGAGGGTTGCAACAGCAGGATCGATAGCAC
259 CAGAGTTCATTCCT-AGTCTAAGAT-----CAGATCGAGGGTTGCAACAGCAGGATCGACAGCAC
* * * * * *
11353457 GCAGCGAGGATCGGGCCGATCCCCGGCTTACGCAATCTGCCTCTCTGGCCGGTTGAGCGCTCGCA
318 GCAGCGAGGACCGGGCCGATCCCCGACTTACACAATCTACCTCTCTGGCCGGCTGAGCGCCCGCA
11353522 CGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC-CAAACCAGACC
383 CGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTC-AACCAGACC
* * * * * * * * ** *
11353586 GAGGGTTGTGGCCGTGGGA-CGGGCATCATGTAGAGGGGGATC-GAGCCGTTTCC-CGGCTTGCG
447 GAGGGTTATGGCAGCGGGATC-GACAGCACGTAGAGAGGGACCAG-GCCG-AGCCTCGGCTTGCA
* * * * * * * * **
11353648 CATTCTGCCTCTCCGACCGACTGAGCGCCCGCACATTCATTTCTTGGGTTGGCTTAGGCATACGG
509 CATTATGCCTATCCGACCGACTCAACGCCCGAACACTCATTTCATGGGTTGACTTAGGCATACAA
**
11353713 AGTTCATTCCTTGTCTAAG
574 AGTTCATTCCCAGTCTAAG
11353732 CATACAGAGT
Statistics
Matches: 498, Mismatches: 85, Indels: 22
0.82 0.14 0.04
Matches are distributed among these distances:
665 2 0.00
666 119 0.24
667 119 0.24
668 1 0.00
670 3 0.01
671 251 0.50
672 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (667 bp):
ATTCTGCCTCTACGTCCGGCTGAGCACCTGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGA
GTTCATCCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGTAGCAGGACCAACAACAGGATCG
GCAGCACACATAGGGGGACCGAGCTGATCCCCAGCTTACGAATTATGCCTCTCCGGCCGGCCGAG
CACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACA
GAGTTCATTCCTAGTCTAAGATCAGATCGAGGGTTGCAACAGCAGGATCGACAGCACGCAGCGAG
GACCGGGCCGATCCCCGACTTACACAATCTACCTCTCTGGCCGGCTGAGCGCCCGCACGCCCGTT
TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCAACCAGACCGAGGGTTAT
GGCAGCGGGATCGACAGCACGTAGAGAGGGACCAGGCCGAGCCTCGGCTTGCACATTATGCCTAT
CCGACCGACTCAACGCCCGAACACTCATTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCA
GTCTAAGATCAGATCAGACCGAGGGTTGCAGCAGTAGGATCGATAGCACGTAGCGGGTATCAGGT
CGGTCCTCAGCTTACGT
Found at i:11353755 original size:26 final size:26
Alignment explanation
Indices: 11353705--11353757 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11353695 GTTGGCTTAG
* ***
11353705 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
11353731 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
11353757 G
1 G
11353758 AGTTTGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:11354768 original size:159 final size:158
Alignment explanation
Indices: 11354540--11354955 Score: 410
Period size: 159 Copynumber: 2.6 Consensus size: 158
11354530 ACCGAGCCTA
* * * * * * * **
11354540 TCCTCGGCTTACACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCATTTCATGCATTGG
1 TCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGG
* * * * *
11354605 CTTAGGCATAGGTAGTTCATTCCATGTCTAAGCCCCAG-TCGAACCGAGGGATGTGGCAGCGAGA
66 CTTAGGCATAGG-AGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGATGCGACAGCAAGA
* * *
11354669 CCGGTAGCACGCAGAGGGGGATCGGG-CTG
130 CCGATAGCACGCAG-GAGGGATCGGGACAG
* * *
11354698 ATCC-CTGGCTTGTGCATTATGCCTCTCCGACCGGCTCAGCGCCCACACGCTCGTTTCGTGGGTT
1 -TCCTC-GGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTT
* ** *** * * * *
11354762 GACTTAGGCATATAAAGTTCATTCCCA-GTCTAAG-ATTGGACCGGACCGGGGGTTGCGATAGCA
64 GGCTTAGGCATA-GGAGTTCATT-CCATGTCTAAGCACCAGACCGAACCGAGGGATGCGACAGCA
* *
11354825 AGATCGATCGCACGCAGGAGGGATCGGGACAG
127 AGACCGATAGCACGCAGGAGGGATCGGGACAG
* * * *
11354857 TCCTCGGCTTGCGCATTCTGTCTCTCCGACCGGTTGAGCGCCTACACGCTCGTTTTGTGGGTTGG
1 TCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGG
11354922 CTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
66 CTTAGGCATA-GGAGTTCATTCCATGTCTAAGCA
11354956 TACGGAGTTC
Statistics
Matches: 207, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.01
158 93 0.45
159 108 0.52
160 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
TCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGG
CTTAGGCATAGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGATGCGACAGCAAGAC
CGATAGCACGCAGGAGGGATCGGGACAG
Found at i:11354979 original size:26 final size:26
Alignment explanation
Indices: 11354927--11354979 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11354917 GTTGGCTTAG
* *
11354927 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTATAA
11354953 GCATACGGAGTTCATTCCCA-GTATAA
1 GCATACGGAGTTCATT-CCATGTATAA
11354979 G
1 G
11354980 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTATAA
Done.