Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 69 of 402
Found at i:11355354 original size:26 final size:26
Alignment explanation
Indices: 11355306--11355358 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11355296 GTTGACTTAG
*
11355306 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
**
11355332 GCATACGGAGTTCATTTCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
11355358 G
1 G
11355359 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:11355858 original size:26 final size:26
Alignment explanation
Indices: 11355808--11355860 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11355798 GTTGGCTTAT
*
11355808 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
11355834 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
11355860 G
1 G
11355861 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:11356436 original size:157 final size:159
Alignment explanation
Indices: 11356265--11356567 Score: 380
Period size: 157 Copynumber: 1.9 Consensus size: 159
11356255 TGGGACCAAC
* * * * *
11356265 AGCACGCAGAGGGGGATCAGGTCGATCCCTGACTTGTGCATTATGCCTCT-TCGGTCGGCTCAGC
1 AGCACGCAGAGGGGGATCAGGCCGATCCCTAACTTGCGCATTATACCTCTCT-GGTCGACTCAGC
11356329 GCCCGCACGCTCA-TTTCGTGGATTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATC-GA
65 GCCCGCACGCT-AGTTTCGTGGATTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGA
11356392 CCAGACCGAGGGTTGCGGTAGCAGGATCGAT
129 CCAGACCGAGGGTTGCGGTAGCAGGATCGAT
* * * * * * *
11356423 AGCACGTAG-GGGGGATCGGGCCGATCCTTAACTTGCGCATTCTACCTCTCTGGTTGATTGAGCG
1 AGCACGCAGAGGGGGATCAGGCCGATCCCTAACTTGCGCATTATACCTCTCTGGTCGACTCAGCG
* * * * * *
11356487 CCCGTACGCTAGTTTCGTGGGTTGGCTTAGGCATACCGAGTTCATTCCCAGTCTAAGATCAGATC
66 CCCGCACGCTAGTTTCGTGGATTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACC
* *
11356552 GGACTGAGGGTTGCGG
131 AGACCGAGGGTTGCGG
11356568 CAGTAGGACC
Statistics
Matches: 122, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
156 1 0.01
157 95 0.78
158 26 0.21
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (159 bp):
AGCACGCAGAGGGGGATCAGGCCGATCCCTAACTTGCGCATTATACCTCTCTGGTCGACTCAGCG
CCCGCACGCTAGTTTCGTGGATTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACC
AGACCGAGGGTTGCGGTAGCAGGATCGAT
Found at i:11356814 original size:170 final size:170
Alignment explanation
Indices: 11356413--11356814 Score: 416
Period size: 170 Copynumber: 2.4 Consensus size: 170
11356403 GTTGCGGTAG
* * * * **** * * ***
11356413 CAGGATCGATAGCACGTAGGGGGGATCGGGCCGATCCTTAACTTGCGCATTCTACCTCTCTGGTT
1 CAGGATCGACAGCACATAGGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTACCTCTCCGACC
* *
11356478 GATTGAGCGCCCGTACGCTAGTTTCGTGGGTTGGCTTAGGCATACCGAGTTCATTCCCAGTCTAA
66 GGTTGAGCGCCCGTACGCTAGTTTCGTAGGTTGGCTTAGGCATACCGAGTTCATTCCCAGTCTAA
* * * * *
11356543 GATCAGATCGGACTGAGGGTTGCGGCAGTAGGACCAGCAA
131 GACCAGACCGGACTGAGAGTTACGGCAGCAGGACCAGCAA
** ** *
11356583 CAGGATCGACAGCATGTAGGGGGGATTGGGTCGATCCCCGGCTTGCACATTCTATCTCTCCGACC
1 CAGGATCGACAGCACATAGGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTACCTCTCCGACC
* *
11356648 GGTTGAGCGCCCGTACGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTA
66 GGTTGAGCGCCCGTACGCTAGTTTCGTAGGTTGGCTTAGGCATACCGAGTTCATTCCCA-GTCTA
* * * *
11356712 AGCCCCA-ACCGGACTGA-AGTTATGGCAGCAGGATCGGCAA
130 AG-ACCAGACCGGACTGAGAGTTACGGCAGCAGGACCAGCAA
* * * * *
11356752 CGGGATC-AGCAGCACATAGAGGGGGACCGGGTTGATCCCCGGCTTGCGCATTTTGCCTCTCCG
1 CAGGATCGA-CAGCACATAG-GGGGGACCGGGTCGATCCCCGGCTTGCACATTCTACCTCTCCG
11356815 GTCGACCTCT
Statistics
Matches: 191, Mismatches: 37, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
168 1 0.01
169 34 0.18
170 154 0.81
171 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (170 bp):
CAGGATCGACAGCACATAGGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTACCTCTCCGACC
GGTTGAGCGCCCGTACGCTAGTTTCGTAGGTTGGCTTAGGCATACCGAGTTCATTCCCAGTCTAA
GACCAGACCGGACTGAGAGTTACGGCAGCAGGACCAGCAA
Found at i:11357258 original size:159 final size:155
Alignment explanation
Indices: 11356896--11357398 Score: 485
Period size: 159 Copynumber: 3.2 Consensus size: 155
11356886 CCTAGTCTAA
* * * *
11356896 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGAGTTGCGGCAGTAAGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACC-GACCGAGGGTTGTGGCAGTAGGATC-GC
* **
11356960 AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGC
63 AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCAGGCCGGCTGAACGC
** **
11357025 GAGCACGTCCGTTTTGTGGGTTGGCTTAG
128 CCGCACGT-CGTTTCATGGGTTGGCTTAG
** * *
11357054 GCATGGGGAGTTCATTCCATGTCTAAG-TCCCAG-CTCGACCGAGGGTTGTGGCAGTGGGACCAG
1 GCATACGGAGTTCATTCCATGTCTAAGAT--CAGAC-CGACCGAGGGTTGTGGCAGTAGGATC-G
* * * * * * *
11357117 CAGCACACAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCTGGTCGGCTCAAC
62 CAGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCAGGCCGGCTGAAC
* * * *
11357182 GCCCGAATGCTCGTTTCATGGGTTGACTTCG
126 GCCCGCACG-TCGTTTCATGGGTTGGCTTAG
* ** * * * *
11357213 GCAAACGGAGTTCATTCCCA-GTCTAAGATTGGACCGAACCGAGGGTTGTAGAAGCAGTATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCG-ACCGAGGGTTGTGGCAGTAGGATCG-C
* * * *
11357277 AGCACGTAGGGGGGGATCGGGCC-AGTCCCCGGCTTGCGCATTCTACCTCTCAGACCGGTTGAAC
63 AGCACGCA-GGGGGGATCGGGCCGA-TCCCCGGCTTGCGCATTCTGCCTCTCAGGCCGGCTGAAC
11357341 GCCCGCACGTTCGTTTCATGGGTTGGCTTAG
126 GCCCGCACG-TCGTTTCATGGGTTGGCTTAG
*
11357372 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
11357399 CATACAGAGT
Statistics
Matches: 276, Mismatches: 55, Indels: 27
0.77 0.15 0.08
Matches are distributed among these distances:
157 4 0.01
158 59 0.21
159 207 0.75
160 6 0.02
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGACCGAGGGTTGTGGCAGTAGGATCGCAGC
ACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCAGGCCGGCTGAACGCCCG
CACGTCGTTTCATGGGTTGGCTTAG
Found at i:11357402 original size:26 final size:26
Alignment explanation
Indices: 11357372--11357424 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11357362 GTTGGCTTAG
*
11357372 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTAATTCCCA-GTCTAA
11357398 GCATACAGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
11357424 G
1 G
11357425 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:11357604 original size:26 final size:26
Alignment explanation
Indices: 11357568--11357620 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11357558 GTTGACTTAG
*
11357568 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
11357594 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
11357620 G
1 G
11357621 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:11357882 original size:159 final size:158
Alignment explanation
Indices: 11357650--11357938 Score: 400
Period size: 159 Copynumber: 1.8 Consensus size: 158
11357640 TTCGACAGTA
* * * * **
11357650 GGATCGGCAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGTGCATTCTACCTCTCCGGTCGG
1 GGATCGACAGCACGCAGGAGGGACCAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGG
* * * * * *
11357715 TTGAGCG-CCGACACACCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAG
66 CTGAGCGCCCG-CACACCCATTTCGTGGGTTGGCATAGCCATACGGAGTTCATTCCATGTCTAAG
11357779 CCCTAGCCGGACCGAGCGTTGTGGCAATG
130 CCCTAGCCGGACCGAGCGTTGTGGCAATG
* * *
11357808 GGATCGACAGCATGCAGAGAGGGACCAGGCTGATCCCCAGCTTGCGCATTCTACCTTTCCGACCG
1 GGATCGACAGCACGCAG-GAGGGACCAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCG
* *
11357873 GCTGAGCGCCCGCACACTCATTTCGTGGGTTGGCATAGCCATACGGAGTTCTTTCCATGTCTAAG
65 GCTGAGCGCCCGCACACCCATTTCGTGGGTTGGCATAGCCATACGGAGTTCATTCCATGTCTAAG
11357938 C
130 C
11357939 ATACGGAGTT
Statistics
Matches: 112, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
158 15 0.13
159 94 0.84
160 3 0.03
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (158 bp):
GGATCGACAGCACGCAGGAGGGACCAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGG
CTGAGCGCCCGCACACCCATTTCGTGGGTTGGCATAGCCATACGGAGTTCATTCCATGTCTAAGC
CCTAGCCGGACCGAGCGTTGTGGCAATG
Found at i:11357948 original size:26 final size:25
Alignment explanation
Indices: 11357912--11357962 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
11357902 TTGGCATAGC
*
11357912 CATACGGAGTTCTTTCCATGTCTAAG
1 CATACGGAGTTCATTCCA-GTCTAAG
11357938 CATACGGAGTTCATTCCAGTCTAAG
1 CATACGGAGTTCATTCCAGTCTAAG
11357963 AGTGTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (25 bp):
CATACGGAGTTCATTCCAGTCTAAG
Found at i:11358683 original size:25 final size:26
Alignment explanation
Indices: 11358632--11358683 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11358622 GTTGACTTAG
*
11358632 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
*
11358658 GCATATGAAGTTCAT-TCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
11358683 G
1 G
11358684 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAGTCTAA
Found at i:11359364 original size:26 final size:26
Alignment explanation
Indices: 11359312--11359367 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
11359302 TGGGTTGACT
* *
11359312 TAAGTATACGGAGTTCATCCTCGGTC
1 TAAGCATACGGAGTTCATCCTCAGTC
*
11359338 TAAGCATACGGAGTTTATTCCT-AGTC
1 TAAGCATACGGAGTTCA-TCCTCAGTC
11359364 TAAG
1 TAAG
11359368 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCTCAGTC
Found at i:11359655 original size:158 final size:157
Alignment explanation
Indices: 11359480--11360236 Score: 523
Period size: 158 Copynumber: 4.8 Consensus size: 157
11359470 CTGTACGCCG
* *
11359480 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCAG-ACCAAGGG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGTCAGAACCAAGGG
* * * *
11359543 TTGTGGCAGTGGGACCGACAGCACGCAGAGGGGGACTGGGTCGATCCTCGACTTGCGCATTATGC
64 TTGCGACAGTAGGACCGACAGCACGCAG-GGGGGACTGGGTCGATCCCCGACTTGCGCATTATGC
*
11359608 CTCTTGGCCGGCTCAGCGCCTGAACACTCA
128 CTCTTGGCCGGCTCAGCGCCCGAACACTCA
* * *** * * * *
11359638 TTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGATTTGACCGCACCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGTCAGAACCAAGGGTT
* * * * * * * *
11359703 ACGATAGCAGGATCAACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTC
66 GCGACAGTAGGACCGACAGCACGCAGGGGGGACTGGGTCGATCCCCGACTTGCGCATTATGCCT-
* * * *
11359768 GCTT-GCTGGCTGAGCGCCCGCACACTCG
130 -CTTGGCCGGCTCAGCGCCCGAACACTCA
* * *
11359796 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCAACGGT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAG-TCAGAACCAAGGGT
* ** * ** *
11359860 TGCGACAGTAGGATCGACAGCACGCAGGAAGGA-TCGGG-CTGAACCCCGACAAGCGCATTCTGC
65 TGCGACAGTAGGACCGACAGCACGCAGGGGGGACT-GGGTC-GATCCCCGACTTGCGCATTATGC
** * * * * *
11359923 CT-TTCCGATCTGCTAAGCGCCCGTACGCCCA
128 CTCTT--GGCCGGCTCAGCGCCCGAACACTCA
* * * * * *
11359954 TTTCGTGGGTTGGCTTAGGCATA-GAAAGTTCATT-CCATGTCTAAGCCCCAG-CTGAAGCGAGG
1 TTTCATGGGTTGGCTTAGGCATACG-GAGTTCATTCCCA-GTCTAAG-ACCAGTCAGAACCAAGG
* * * * * *
11360016 GTTGTGGCAGTGGGACTG-CAGCACGCAGAGGGGGACTGGGTCGAT-CCCTAGCTTGCACATTAT
63 GTTGCGACAGTAGGACCGACAGCACGCAG-GGGGGACTGGGTCGATCCCCGA-CTTGCGCATTAT
* * * * *
11360079 GCCTCTCCGGCCAGCTCAGTGCCCGAACGCTCG
126 GCCTCT-TGGCCGGCTCAGCGCCCGAACACTCA
* * * * * * * *
11360112 TTTCATGGGTTGACGTTAGGCATACGAATTTCATTCCCAATCTTAGATCAGATC-GGACAAAGGG
1 TTTCATGGGTTGGC-TTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAG-TCAGAACCAAGGG
* ** * * * * * * * *
11360176 TTACGGTAGTAGGATCGATAGCACGTAGGGTGGGACCGAGTCGATCCTCGGCTTGTGCATT
64 TTGCGACAGTAGGACCGACAGCACGCAGGG-GGGACTGGGTCGATCCCCGACTTGCGCATT
11360237 CTACCTCTCT
Statistics
Matches: 460, Mismatches: 111, Indels: 54
0.74 0.18 0.09
Matches are distributed among these distances:
155 2 0.00
157 57 0.12
158 312 0.68
159 54 0.12
160 33 0.07
161 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGTCAGAACCAAGGGTT
GCGACAGTAGGACCGACAGCACGCAGGGGGGACTGGGTCGATCCCCGACTTGCGCATTATGCCTC
TTGGCCGGCTCAGCGCCCGAACACTCA
Found at i:11359918 original size:315 final size:315
Alignment explanation
Indices: 11359341--11359924 Score: 712
Period size: 315 Copynumber: 1.9 Consensus size: 315
11359331 CTCGGTCTAA
* * ***
11359341 GCATACGGAGTTTATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAAGATCGGTA
1 GCATACGGAGTTTATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAAGATCAACA
* * ** * * *
11359406 GCATGCAGGGGGGACTAAGTCGATCCTTAGCTTGGGCATTCTGCCTCTCTGGCTGGCTGAATGCC
66 GCACGCAGGGGGGACCAAGTCGATCCCCAGCTTGCGCATTCTGCCTCGCTGGCTGGCTGAACGCC
* * * * *
11359471 TGTACGCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGA
131 CGCACACCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGTCAGA
* * * * ** * * **
11359536 CCAAGGGTTGTGGCAGTGGGACCGACAGCACGCAGAGGGGGACTGGGTCGATCCTCGACTTGCGC
196 CCAACGGTTGCGACAGTAGGACCGACAGCACGCAGAGAAGGACTGGGTCGAACCCCGACAAGCGC
11359601 ATTATGCCTCTTGGCCGGCTCAGCGCCTGAACACTCATTTCATGGGTTGACTTAG
261 ATTATGCCTCTTGGCCGGCTCAGCGCCTGAACACTCATTTCATGGGTTGACTTAG
** * *
11359656 GCATACGGAGTTTATTCCCAGTCTAAGATTTGACC-GCACCGAGGGTTACGATAGCAGGATCAAC
1 GCATACGGAGTTTATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTACGACAGCAAGATCAAC
** * * *
11359720 AGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCGCTTGCTGGCTGAGCGC
65 AGCACGCAGGGGGGACCAAGTCGATCCCCAGCTTGCGCATTCTGCCTCGCTGGCTGGCTGAACGC
*
11359785 CCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGAT
130 CCGCACAC-CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-T
* *
11359848 CGGACCAACGGTTGCGACAGTAGGATCGACAGCACGCAG-GAAGGA-TCGGG-CTGAACCCCGAC
192 CAGACCAACGGTTGCGACAGTAGGACCGACAGCACGCAGAGAAGGACT-GGGTC-GAACCCCGAC
*
11359910 AAGCGCATTCTGCCT
255 AAGCGCATTATGCCT
11359925 TTCCGATCTG
Statistics
Matches: 223, Mismatches: 40, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
314 3 0.01
315 141 0.63
316 76 0.34
317 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (315 bp):
GCATACGGAGTTTATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAAGATCAACA
GCACGCAGGGGGGACCAAGTCGATCCCCAGCTTGCGCATTCTGCCTCGCTGGCTGGCTGAACGCC
CGCACACCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGTCAGA
CCAACGGTTGCGACAGTAGGACCGACAGCACGCAGAGAAGGACTGGGTCGAACCCCGACAAGCGC
ATTATGCCTCTTGGCCGGCTCAGCGCCTGAACACTCATTTCATGGGTTGACTTAG
Found at i:11359998 original size:316 final size:316
Alignment explanation
Indices: 11359424--11360200 Score: 730
Period size: 316 Copynumber: 2.5 Consensus size: 316
11359414 GGGGGACTAA
** * * * *
11359424 GTCGATCCTTAGCTTGGGCATTCTGCCTCTCTGGCTGGCTGAATGCCTGTACGC-CGTTTCATGG
1 GTCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCTGGCTGAGTGCCCGAACGCTCGTTTCATGG
* ** * *
11359488 GTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCAGACCAAGGGTTGTGGCA
66 GTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCAAGGGTTGCGGCA
* * ** * * ** *
11359551 GTGGGACCGACAGCACGCAGAGGGGGACTGGGTCGATCCTCGACTTGCGCATTATGCCTCTTGGC
129 GTAGGATCGACAGCACGCAGAGAAGGACTGGGTCGAACCCCGACAAGCGCATTATGCCTCTTGAC
* * * * *
11359616 CGGCTCAGCGCCTGAACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTA
194 CGGCTAAGCGCCCGAACACCCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTA
**** * *
11359681 AG-ATTTGACCGCACCGAGGGTTACGATAGCAGGATCAACAGCACGCAG-GGGGGACCGG
259 AGCCCCAG-CCGAACCGAGGGTTACGACAGCAGGA-CAACAGCACGCAGAGGGGGACCGG
* * * * * *
11359739 GTCGATCCCCGGCTTGCGCATTCTGCCTCGCTTGCTGGCTGAGCGCCCGCACACTCGTTTCATGG
1 GTCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCTGGCTGAGTGCCCGAACGCTCGTTTCATGG
* *
11359804 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAACGGTTGCGACAGT
66 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAGT
*
11359869 AGGATCGACAGCACGCAG-GAAGGA-TCGGG-CTGAACCCCGACAAGCGCATTCTGCCT-TTCCG
131 AGGATCGACAGCACGCAGAGAAGGACT-GGGTC-GAACCCCGACAAGCGCATTATGCCTCTT--G
* * * * * *
11359930 ATCTGCTAAGCGCCCGTACGCCCATTTCGTGGGTTGGCTTAGGCATA-GAAAGTTCATT-CCATG
192 ACCGGCTAAGCGCCCGAACACCCATTTCATGGGTTGACTTAGGCATACG-AAGTTCATTCCCA-G
* * ** * ** ** *
11359993 TCTAAGCCCCAGCTGAAGCGAGGGTTGTGGCAGTGGGACTGCAGCACGCAGAGGGGGACTGG
255 TCTAAGCCCCAGCCGAACCGAGGGTTACGACAGCAGGACAACAGCACGCAGAGGGGGACCGG
* * * * ** *
11360055 GTCGATCCCTAGCTTGCACATTATGCCTCTCCGGCCAGCTCAGTGCCCGAACGCTCGTTTCATGG
1 GTCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCTGGCTGAGTGCCCGAACGCTCGTTTCATGG
* * * * * * * *
11360120 GTTGACGTTAGGCATACGAATTTCATTCCCAATCTTAGATCAGATCGGACAAAGGGTTACGGTAG
66 GTTGGC-TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAG
*
11360185 TAGGATCGATAGCACG
130 TAGGATCGACAGCACG
11360201 TAGGGTGGGA
Statistics
Matches: 371, Mismatches: 79, Indels: 22
0.79 0.17 0.05
Matches are distributed among these distances:
314 4 0.01
315 88 0.24
316 211 0.57
317 68 0.18
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (316 bp):
GTCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCTGGCTGAGTGCCCGAACGCTCGTTTCATGG
GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAGT
AGGATCGACAGCACGCAGAGAAGGACTGGGTCGAACCCCGACAAGCGCATTATGCCTCTTGACCG
GCTAAGCGCCCGAACACCCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
CCCCAGCCGAACCGAGGGTTACGACAGCAGGACAACAGCACGCAGAGGGGGACCGG
Found at i:11361729 original size:26 final size:26
Alignment explanation
Indices: 11361699--11361751 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11361689 GTTGACTTAG
11361699 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
11361725 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11361751 G
1 G
11361752 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11362252 original size:158 final size:159
Alignment explanation
Indices: 11361798--11362254 Score: 417
Period size: 158 Copynumber: 2.9 Consensus size: 159
11361788 TAGCATGAAG
* * * * *
11361798 GGGGGACCGAGCCGATCC-CTAGCTTACGCATTCTGCCTCTTC-GACCGGCT-GA-GCGCCGAAC
1 GGGGGACCGAGTCGATCCTC-GGCTTACGCATTATGCCAC-TCAGGCCGGCTCGATGC-CCGAAC
* * * * * * * *
11361859 ACCCATTTCGTGGGTTGGCCTAGGCTTAGGGAGTTCATTCTATGTCTAAGCCCCAGCCGGACTGA
63 ACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGA
* * * * *
11361924 GGGTTGTGGCAGTAGGATCGATAGTACGTAGA
128 GGGTTGTGGTAGCAAGATCGATAGCACGCAGA
* * *
11361956 GGGGGACCGAGTCGATCCTCGGCTTACGCGTTATGCCTCTTAGGCCGGCTCGATGCCCGAACACT
1 GGGGGACCGAGTCGATCCTCGGCTTACGCATTATGCCACTCAGGCCGGCTCGATGCCCGAACACT
* * * **** *
11362021 CGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTATAAG-ATTGGACCGCACCGAG
66 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAG
* * * *
11362084 TGTTGCGGTAGCAAGATCGATAGCATGCA-T
129 GGTTGTGGTAGCAAGATCGATAGCACGCAGA
* ** * * * * *
11362114 GGGGGACCGGGTCGATCCTCGGCTTGGGCATTCTGCCACTCCGGCTGGCT-GAGTGCCCGCACGC
1 GGGGGACCGAGTCGATCCTCGGCTTACGCATTATGCCACTCAGGCCGGCTCGA-TGCCCGAACAC
* *
11362178 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGG
65 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
11362243 GTTGTGGTAGCA
130 GTTGTGGTAGCA
11362255 GGACCGGCAG
Statistics
Matches: 237, Mismatches: 53, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
157 6 0.03
158 150 0.63
159 77 0.32
160 4 0.02
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
GGGGGACCGAGTCGATCCTCGGCTTACGCATTATGCCACTCAGGCCGGCTCGATGCCCGAACACT
CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
TTGTGGTAGCAAGATCGATAGCACGCAGA
Found at i:11362399 original size:26 final size:26
Alignment explanation
Indices: 11362370--11362422 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11362360 GTTGACTTAG
*
11362370 GCATAC-GAAGTTTATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
11362396 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11362422 G
1 G
11362423 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11362972 original size:26 final size:26
Alignment explanation
Indices: 11362922--11362974 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11362912 GTTGGCTTAG
*
11362922 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
11362948 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
11362974 G
1 G
11362975 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:11363184 original size:25 final size:25
Alignment explanation
Indices: 11363135--11363185 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
11363125 GTTGACATTG
* *
11363135 GCATACGGAGATTATCCTAGTCTAA
1 GCATACGGAGATTATCCCAGCCTAA
11363160 GCATACGGAG-TTATTCCCAGCCTAA
1 GCATACGGAGATTA-TCCCAGCCTAA
11363185 G
1 G
11363186 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 3 0.13
25 20 0.87
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (25 bp):
GCATACGGAGATTATCCCAGCCTAA
Found at i:11363356 original size:26 final size:26
Alignment explanation
Indices: 11363320--11363369 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
11363310 GGCTTAGCCT
11363320 TACGGAGTTCATTCC-ATGTCTAAGCA
1 TACGGAGTTCATTCCTA-GTCTAAGCA
11363346 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCTAGTCTAAG
11363370 ATCGGACCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCTAGTCTAAGCA
Found at i:11363716 original size:26 final size:27
Alignment explanation
Indices: 11363676--11363728 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
11363666 TGGCTTATGA
11363676 CATACGAAGTTCATTCCCAT-GTCTAAG
1 CATACGAAGTTCATT-CCATAGTCTAAG
*
11363703 CATACGGA-TTCATTCCATAGTCTAAG
1 CATACGAAGTTCATTCCATAGTCTAAG
11363729 ATTCAAGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 4 0.17
26 13 0.54
27 7 0.29
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (27 bp):
CATACGAAGTTCATTCCATAGTCTAAG
Found at i:11364405 original size:171 final size:171
Alignment explanation
Indices: 11364092--11364419 Score: 405
Period size: 171 Copynumber: 1.9 Consensus size: 171
11364082 TGAGACCAGT
* ** * * *
11364092 AGCACGCAGAGGGGGACCGGGTTGATCCCCGACTTGCGCATTCTGCCTCTCCAGTCTGCTGGGCG
1 AGCACGCAGAAGGGGACCGGCCTGATCCCCGACTTGCGCATTCTGCCACTCCAGTCGGCTGAGCG
** * * *
11364157 CCCGCACGCTGGTTTTGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCCGCAATC
66 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCGCAATC
* * * *
11364222 GGACCGAGGGTTGTGGTAGCAGGATCGGTAGTGGGATCGAC
131 GAACCAAGGGTTGCGGCAGCAGGATCGGTAGTGGGATCGAC
* *
11364263 AGCACGCAGAAGGGGACCGGCCTGATCCCCGGCTTGCGCATTAC-GCCACTCC-GATCGGCTTAG
1 AGCACGCAGAAGGGGACCGGCCTGATCCCCGACTTGCGCATT-CTGCCACTCCAG-TCGGCTGAG
* *
11364326 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAGATCG-
64 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAG-CCGC
11364389 AA-CTGAACCAAGGGTTGCGGCAGCAGGATCG
127 AATC-GAACCAAGGGTTGCGGCAGCAGGATCG
11364420 ACAGCACGTA
Statistics
Matches: 133, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
170 2 0.02
171 125 0.94
172 6 0.05
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (171 bp):
AGCACGCAGAAGGGGACCGGCCTGATCCCCGACTTGCGCATTCTGCCACTCCAGTCGGCTGAGCG
CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCGCAATC
GAACCAAGGGTTGCGGCAGCAGGATCGGTAGTGGGATCGAC
Found at i:11364554 original size:26 final size:26
Alignment explanation
Indices: 11364516--11364568 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
11364506 GTTGGCTTAG
*
11364516 GCATACGGAGTTCCTT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
* *
11364542 GCATATGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11364568 G
1 G
11364569 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11364757 original size:195 final size:196
Alignment explanation
Indices: 11364410--11364765 Score: 493
Period size: 195 Copynumber: 1.8 Consensus size: 196
11364400 GGGTTGCGGC
* *
11364410 AGCAGGATCGACAGCACGTAGGGGGGATCAGGCCGGTCCCCAGCTTGCACATACTACCTCTTCGA
1 AGCAGGATCGACAGCACGTAGGGGGGATCAGGCCGATCCCCAGCTTGCACATACTACCTATTCGA
* * * * * * * *
11364475 TCGGCTTAGCGCCCACACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCCTTCCATGTCT
66 CCGGCTAAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCT
* *
11364540 AAGCATATGGGGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTGGCAGTAGGACCAG
131 AAGAATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTGGCAGTAGGACCAG
11364605 T
196 T
* * ** *
11364606 AGCAGGATCGGCAGCACGTA-GGGGGATCGGGCCGATCCCCAGCTTGCGGATTCTACCTA-TCTG
1 AGCAGGATCGACAGCACGTAGGGGGGATCAGGCCGATCCCCAGCTTGCACATACTACCTATTC-G
* *
11364669 GCCGGCTAAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GT
65 ACCGGCTAAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAT-CCCATGT
*
11364733 CTAAGAATATGGAGTTCTTTCCCAGTCTAAGAT
129 CTAAGAATATGGAGTTCATTCCCAGTCTAAGAT
11364766 TGAACTAGAT
Statistics
Matches: 138, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
194 2 0.01
195 114 0.83
196 22 0.16
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (196 bp):
AGCAGGATCGACAGCACGTAGGGGGGATCAGGCCGATCCCCAGCTTGCACATACTACCTATTCGA
CCGGCTAAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCT
AAGAATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTGGCAGTAGGACCAG
T
Found at i:11365090 original size:26 final size:26
Alignment explanation
Indices: 11365054--11365106 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11365044 GTTGGCTTAG
11365054 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
11365080 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11365106 G
1 G
11365107 TTTGTCAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11366165 original size:159 final size:157
Alignment explanation
Indices: 11365811--11366229 Score: 373
Period size: 159 Copynumber: 2.6 Consensus size: 157
11365801 AAGCATATGA
* * * ** * *
11365811 AGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGTAGGATCGATAGCATGCAG
1 AGTTCATTTCTAGTCTAAGATCAGACCGGAC-GAGGGTTACGGCAACAGGACCGATAGCAGGCAG
* * * * *
11365876 GGGGGACAGGGCCGATCCCCAACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCTCACATGCC
65 GGGGGACAGGGCCGATCCCCAACTTGCGCATTATGCCTCTTCGGCCAGCTCAGCGCCCACACGCC
* **
11365941 CGTTTCGTGGGTTGGCTTAGGCATAGGG
130 CGTTTCGTGGGTTGACTTAGGCATACAG
* ** * * * * *
11365969 AGTTCA-TTCCATGTCTAAGCCCTTG-TCGGACCAAGGGTTACGGCAACGGGACCGGTAGCAGGC
1 AGTTCATTTCTA-GTCTAAGATC-AGACCGGA-CGAGGGTTACGGCAACAGGACCGATAGCAGGC
* * * *
11366032 AGAGGGGGACCGGGCCGATCCTCAGCTTGTGCATTATGCCTC-TCTGGCCAGCTCAGCGCCCACA
63 AG-GGGGGACAGGGCCGATCCCCAACTTGCGCATTATGCCTCTTC-GGCCAGCTCAGCGCCCACA
11366096 CGCTCC-TTTCGTGGGTTGACTTAGGCATACAG
126 CGC-CCGTTTCGTGGGTTGACTTAGGCATACAG
* * * * * * *
11366128 AGTTCATTTCTAGTCTAAGATCAGACCAGATCGAGGGTTATGGC-AGAGGATCGACAGCACGTAG
1 AGTTCATTTCTAGTCTAAGATCAGACCGGA-CGAGGGTTACGGCAACAGGACCGATAGCAGGCAG
* ** *
11366192 GGGGGATC-GAGCCGATCCCCCGCTTGCGCATTCTGCCT
65 GGGGGA-CAGGGCCGATCCCCAACTTGCGCATTATGCCT
11366230 TTCCCATCGA
Statistics
Matches: 204, Mismatches: 48, Indels: 19
0.75 0.18 0.07
Matches are distributed among these distances:
157 34 0.17
158 59 0.29
159 105 0.51
160 6 0.03
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (157 bp):
AGTTCATTTCTAGTCTAAGATCAGACCGGACGAGGGTTACGGCAACAGGACCGATAGCAGGCAGG
GGGGACAGGGCCGATCCCCAACTTGCGCATTATGCCTCTTCGGCCAGCTCAGCGCCCACACGCCC
GTTTCGTGGGTTGACTTAGGCATACAG
Found at i:11366307 original size:26 final size:26
Alignment explanation
Indices: 11366277--11366329 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11366267 GTTGGCTTAG
11366277 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
*
11366303 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
11366329 G
1 G
11366330 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:11367180 original size:159 final size:158
Alignment explanation
Indices: 11366719--11367180 Score: 395
Period size: 159 Copynumber: 2.9 Consensus size: 158
11366709 GATCGGATTG
* * * * * * *
11366719 GACCGAGGGTTAAGGCAGCAGGATCGATAGCACGTAGGGGGT-ACCGGGCCAATCCCC-GACTTA
1 GACCAAGGGTTACGACAGCAGGATCAACAGCACGCAGGGGGTGACCGGGCCGATCCCCAG-CTTA
* * * * *
11366782 CGCATTCTGCCTCTCCGGTCGACTGAGCACCCACACG-TCCGTTTCGTTGGTTGGCTT--CATAG
65 CGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCT-CGTTTCGTTGGTTGGCTTAGCATAC
11366844 GGAGTTCATTCCATGTCTAAACCCCAGCCA
129 GGAGTTCATTCCATGTCTAAACCCCAGCCA
* * * * * * * ** *
11366874 GACCGAGGGTTATGGCAGCGGGACCAGCAGCACGCAGAGGGG-GATCGAACTGATCCCCTA-CTT
1 GACCAAGGGTTACGACAGCAGGATCAACAGCACGCAG-GGGGTGACCGGGCCGATCCCC-AGCTT
** * * * * * *
11366937 GTGCATTATGCCTCTTTGGTCTGCTCAACGCCCGCACGCTCGTTTCG-TGGATTGACTTATGCAT
64 ACGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTTGG-TTGGCTTA-GCAT
* * * **
11367001 ACGAAGTTCATTCCCA-GTCTATGATCGGA-CCA
127 ACGGAGTTCATT-CCATGTCTA-AACCCCAGCCA
* * *
11367033 GACTAAGGGTTGCGATAGCAGGATCAACAGCACGCAGGGGGTGACCGGGCCGATCCCCAGCTTAC
1 GACCAAGGGTTACGACAGCAGGATCAACAGCACGCAGGGGGTGACCGGGCCGATCCCCAGCTTAC
* * * *
11367098 GCATTCTTCCTCTTCGGTCGGTTGAGCGCCCGCACGCTCATTTCGTTGGTTGGCTTAGGCGTACG
66 GCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTTGGTTGGCTTA-GCATACG
11367163 GAGTTCATTCCATGTCTA
130 GAGTTCATTCCATGTCTA
11367181 CGCATACGGA
Statistics
Matches: 235, Mismatches: 57, Indels: 26
0.74 0.18 0.08
Matches are distributed among these distances:
155 33 0.14
156 57 0.24
157 1 0.00
158 8 0.03
159 127 0.54
160 9 0.04
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.24
Consensus pattern (158 bp):
GACCAAGGGTTACGACAGCAGGATCAACAGCACGCAGGGGGTGACCGGGCCGATCCCCAGCTTAC
GCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTTGGTTGGCTTAGCATACGG
AGTTCATTCCATGTCTAAACCCCAGCCA
Found at i:11372683 original size:26 final size:26
Alignment explanation
Indices: 11372653--11372705 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11372643 GTTGACTTAC
11372653 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
11372679 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11372705 G
1 G
11372706 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11373182 original size:26 final size:26
Alignment explanation
Indices: 11373152--11373204 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11373142 GTTGGCTTAG
*
11373152 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
11373178 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
11373204 G
1 G
11373205 ACCAGCAGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:11373296 original size:165 final size:165
Alignment explanation
Indices: 11373046--11373366 Score: 491
Period size: 165 Copynumber: 1.9 Consensus size: 165
11373036 GGGTTGCGTT
* * * * * **
11373046 AGCAGGTTCGACAGCACGCAGGGGGGACTGGGTTAGTACTCGGCTTACGTATTCTGCCTCTCCAG
1 AGCAGGATCGACAGCACGCAGGGGGGACCGGGTGAGTACCCGACTTACACATTCTGCCTCTCCAG
* * * *
11373111 CTGGTTGAGCGCCTGCACGCTCGATTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
66 CCGATTGAGCGCCCGCACGCTCGATTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCT
11373176 AAGCATAAGGAGTTCATTCCCAGTCTAAGACCAGC
131 AAGCATAAGGAGTTCATTCCCAGTCTAAGACCAGC
*
11373211 AGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGA-TCCCCGACTTACACATTCTGCCTCTCCA
1 AGCAGGATCGACAGCACGCAGGGGGGACCGGGT-GAGTACCCGACTTACACATTCTGCCTCTCCA
* *
11373275 GCCGATTGAGTGCCCGCACGCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTC
65 GCCGATTGAGCGCCCGCACGCTCGATTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTC
*
11373340 TAAGCATATGGAGTTCATTCCCAGTCT
130 TAAGCATAAGGAGTTCATTCCCAGTCT
11373367 GAGATCGGAT
Statistics
Matches: 140, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
165 139 0.99
166 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (165 bp):
AGCAGGATCGACAGCACGCAGGGGGGACCGGGTGAGTACCCGACTTACACATTCTGCCTCTCCAG
CCGATTGAGCGCCCGCACGCTCGATTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGCATAAGGAGTTCATTCCCAGTCTAAGACCAGC
Found at i:11373775 original size:26 final size:26
Alignment explanation
Indices: 11373697--11373763 Score: 134
Period size: 26 Copynumber: 2.6 Consensus size: 26
11373687 GTTGACTTAG
11373697 GCATATGGAGTTCATCCCCTGTCTAA
1 GCATATGGAGTTCATCCCCTGTCTAA
11373723 GCATATGGAGTTCATCCCCTGTCTAA
1 GCATATGGAGTTCATCCCCTGTCTAA
11373749 GCATATGGAGTTCAT
1 GCATATGGAGTTCAT
11373764 TTCCAGTCTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCTGTCTAA
Found at i:11374276 original size:26 final size:26
Alignment explanation
Indices: 11374220--11374276 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
11374210 GATGGTTGGC
*
11374220 TTAAGCGTACGGAGTTCATTCCATGT
1 TTAAGCATACGGAGTTCATTCCATGT
* * *
11374246 CTAAGCATTCGGATTTCATTCC-TAGT
1 TTAAGCATACGGAGTTCATTCCAT-GT
11374272 TTAAG
1 TTAAG
11374277 ATTGGACGGG
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (26 bp):
TTAAGCATACGGAGTTCATTCCATGT
Found at i:11374607 original size:26 final size:26
Alignment explanation
Indices: 11374578--11374630 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11374568 GTTGGCTTAG
11374578 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
11374604 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11374630 G
1 G
11374631 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11380775 original size:26 final size:26
Alignment explanation
Indices: 11380725--11380777 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11380715 GTTGGCTTAT
*
11380725 GCATACAAAGTTCATTCCATGTCTAA
1 GCATACAAAGTTCATTCCATATCTAA
*
11380751 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAAAGTTCATT-CCATATCTAA
11380777 G
1 G
11380778 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCATATCTAA
Found at i:11380950 original size:26 final size:26
Alignment explanation
Indices: 11380921--11380973 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11380911 GTTGGCTTAG
11380921 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
11380947 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
11380973 G
1 G
11380974 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:11381391 original size:159 final size:158
Alignment explanation
Indices: 11381142--11381435 Score: 383
Period size: 159 Copynumber: 1.9 Consensus size: 158
11381132 TCAGATCAGA
* * *
11381142 CGAGGGTTGCGGTAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCAT
1 CGAGGGTTGCGGCAGCAGGACCGACAGCACGCAAGGGGGACCGGACCGATCCCCGACTTGCGCAT
* * * *
11381207 TCTTCCTCTTCGATCGACTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
66 TCTGCCTCTTCGACCGACTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCACACGGAGT
11381272 TCATTGCATGTCTAATCACTAGCTGGAC
131 TCATTGCATGTCTAATCACTAGCTGGAC
* * * * * * * *
11381300 CGAGGGTTGTGGCAGCGGGACCGATAGCATGCAGAGGGGGACTGGATCGATCCCCGGCTTGCGTA
1 CGAGGGTTGCGGCAGCAGGACCGACAGCACGCA-AGGGGGACCGGACCGATCCCCGACTTGCGCA
* * * * *
11381365 TTCTGCCTC-TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCACACGGA
65 TTCTGCCTCTTC-GACCGACTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCACACGGA
11381429 GTTCATT
129 GTTCATT
11381436 CCCAGTCTAA
Statistics
Matches: 114, Mismatches: 20, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
158 29 0.25
159 85 0.75
ACGTcount: A:0.16, C:0.28, G:0.33, T:0.23
Consensus pattern (158 bp):
CGAGGGTTGCGGCAGCAGGACCGACAGCACGCAAGGGGGACCGGACCGATCCCCGACTTGCGCAT
TCTGCCTCTTCGACCGACTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCACACGGAGT
TCATTGCATGTCTAATCACTAGCTGGAC
Found at i:11382584 original size:159 final size:154
Alignment explanation
Indices: 11382139--11382982 Score: 475
Period size: 159 Copynumber: 5.2 Consensus size: 154
11382129 ATCCCCAATC
* * * * *
11382139 TAAGCATGCAGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCG
1 TAAGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGATCG
* * * **
11382204 ACAGCACGCA-GGGGGATCGGGCTGATCCTCGGTTTGCGCATTCTACCTCTCCAACCGGCTAAGC
65 ACAGCACGCAGGGGGGACCGGGC-GATCCCCGG-CTGCGCATTCTACCTCTCCGGCCGGCTAAGC
* *
11382268 GCCCGCACGCCCGTTTCGTGGGTTGC-
128 GCCCGCACGCTCGTTTCATGGGTTGCT
* * * ** *
11382294 TAA-CAAATAAGGAGTTCATTACATGTCCAAGCCCCAG-CC-AGACCGAGGGTTGTGGCAGCGGG
1 TAAGC--ATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGA-ACCGAGGGTTGTGGCAGC-AG
* * * * * * * *
11382356 GATCGACAGGA-GCAGAGGGGACCAGCCGATCCCCAGCATGCGCATTATGCCTCTCCGGTCGGCT
60 GATCGACAGCACGCAGGGGGGACCGGGCGATCCCCGGC-TGCGCATTCTACCTCTCCGGCCGGCT
* * *
11382420 CAGCGCCCGCAGGCTCATTTCATGGGTTGACT
124 AAGCGCCCGCACGCTCGTTTCATGGGTTG-CT
*
11382452 TAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAACCGAGGGTTGTGGTAGCAGGATCG
1 TAAGCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGATCG
* * * * *
11382517 AAAGCACGCAGGGGTGGACCGGGTCGGTCCCCGGCTCGCGCATTCTACCTCTCCGGCCAGTTGAG
65 ACAGCACGCAGGGG-GGACCGGG-CGATCCCCGGCT-GCGCATTCTACCTCTCCGGCCGGCTAAG
* *
11382582 CGCACGCACGCTTGTTTCATGGGTTGTCT
127 CGCCCGCACGCTCGTTTCATGGGTTG-CT
* * *
11382611 T-AGCCATACGGAGTTCATTCCGGAGTCCATTCCCAG-TCTAAGATCTAACCGGCTGAGGGTTGC
1 TAAG-CATACGGAGTTCATTCC--AGT-C--T--AAGATC--AGACCGAA-C--C-GAGGG-T--
* * *
11382674 AGTAGTAGGACTAGCAGCAGGATCGACAGCACGCAGGGGGAGACCGGGCCATCCCTGGCTTGCAC
49 --T-GT--G----GCAGCAGGATCGACAGCACGCAGGGGG-GACCGGGCGATCCCCGGC-TGCGC
* * * * *
11382739 ATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTTGGTTGGTT
103 ATTCTACCTCTCCGGCCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTT-GCT
* * ** * * * * *
11382792 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGGTAGCGGGA-C
1 TAAGCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGAACCGAGGGTTGTGGCAGCAGGATC
* * ** * ** * * * ** *
11382855 TGGCAGCACGCAGAGGGGGACAGAACCGATCCCCTGCTTGCATATTATGCCTCTTCGGTTGGCTC
64 -GACAGCACGCAG-GGGGGACCG-GGCGATCCCCGGC-TGCGCATTCTACCTCTCCGGCCGGCTA
* * *
11382920 AGCACTCGCACGCTCATTTCATGGGTTGGCT
125 AGCGCCCGCACGCTCGTTTCATGGGTT-GCT
*
11382951 TAGGCATACGGAGTTCATTCCCAGTCTAAGAT
1 TAAGCATACGGAGTTCATT-CCAGTCTAAGAT
11382983 AAATTTGGGA
Statistics
Matches: 532, Mismatches: 103, Indels: 105
0.72 0.14 0.14
Matches are distributed among these distances:
154 1 0.00
155 5 0.01
156 103 0.19
157 69 0.13
158 36 0.07
159 158 0.30
160 6 0.01
161 1 0.00
162 1 0.00
163 1 0.00
164 4 0.01
165 3 0.01
166 6 0.01
167 1 0.00
169 2 0.00
170 10 0.02
171 1 0.00
173 1 0.00
174 3 0.01
175 5 0.01
176 2 0.00
177 2 0.00
178 1 0.00
179 2 0.00
180 2 0.00
181 72 0.14
182 34 0.06
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (154 bp):
TAAGCATACGGAGTTCATTCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGATCGA
CAGCACGCAGGGGGGACCGGGCGATCCCCGGCTGCGCATTCTACCTCTCCGGCCGGCTAAGCGCC
CGCACGCTCGTTTCATGGGTTGCT
Found at i:11384194 original size:26 final size:26
Alignment explanation
Indices: 11384157--11384209 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11384147 GTTGGCTTAG
11384157 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
11384183 GCATAC-GAAGTTCATTCCTAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
11384209 G
1 G
11384210 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11384517 original size:133 final size:132
Alignment explanation
Indices: 11384267--11384519 Score: 312
Period size: 133 Copynumber: 1.9 Consensus size: 132
11384257 GGGACTAGGC
* * *
11384267 CGATACCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCGTTTCATGGGTT
1 CGATACCCAGCTTGCACATTATGCCTCTCCGGCCGGCTCAGCGCCCGCACGCCGTTTCATGGGTT
** * * * * *
11384332 GTGTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTTGTCGCAATCGG
66 GACTTAGGCATACGGAGTTCATTCCATGACTAAGCACCAGACGAACCAAGGGTTGTCGCAATCGG
11384397 GT
131 GT
* * * *
11384399 CGATCCCCGGCTTGCACATTATGCCTCTTCGGCCTGCTCAGCGCCCGCACGCTCGTTTCATGGGT
1 CGATACCCAGCTTGCACATTATGCCTCTCCGGCCGGCTCAGCGCCCGCACGC-CGTTTCATGGGT
* * *
11384464 TGACTTAGGCATACGGAGTTCATTCGCA-GAGTAAG-ATCAGACAGGACCAAGGGTTG
65 TGACTTAGGCATACGGAGTTCATTC-CATGACTAAGCACCAGAC-GAACCAAGGGTTG
11384520 CGGCAACAGG
Statistics
Matches: 101, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
132 49 0.49
133 50 0.50
134 2 0.02
ACGTcount: A:0.18, C:0.30, G:0.28, T:0.24
Consensus pattern (132 bp):
CGATACCCAGCTTGCACATTATGCCTCTCCGGCCGGCTCAGCGCCCGCACGCCGTTTCATGGGTT
GACTTAGGCATACGGAGTTCATTCCATGACTAAGCACCAGACGAACCAAGGGTTGTCGCAATCGG
GT
Found at i:11384661 original size:26 final size:26
Alignment explanation
Indices: 11384632--11384684 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11384622 GTTGGCATAG
11384632 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
11384658 GCATACGGCGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11384684 G
1 G
11384685 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11385911 original size:26 final size:26
Alignment explanation
Indices: 11385862--11385914 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11385852 GTTAGCTTAG
* *
11385862 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
11385888 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
11385914 G
1 G
11385915 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:11386245 original size:515 final size:512
Alignment explanation
Indices: 11385485--11386636 Score: 1328
Period size: 515 Copynumber: 2.2 Consensus size: 512
11385475 CCCTGACTTA
* * *
11385485 TGCATTCTGCCTCTCCGACCGGCTGAGGGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATAG
1 TGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGC-CGTTTCATAGGTTGGCTTAGGCATAG
** * * *
11385550 GGAGTTAATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACTGGTAGCATGT
65 GGAGTTAATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAAGACCGGTAGCACGC
** * **
11385615 AGAAGGGGACCGGGCTGATCTTCAACTCGCGTATTATGCCTCTCCGGTCTGCTCAACGTTCGCAC
130 AGAAGGGGACCGGGCTGATCCCCAACTCGCGCATTATGCCTCTCCGGTCTGCTCAACGCCCGCAC
* * * *
11385680 GCTCGCTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTAGACTAGACTGA
195 GCTCACTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGA
* * ** *
11385745 GGGTTGCGATAGCAAGATCAACAGCACGCAGGAGGGCATCGGGTCGATCCTCGGCTTGTGCATTT
260 GGGTTGCGACAGCAAGATCAACAGCACGCAGGAGGGCATAGGGTCGATCC-CGGCTTACGCATTC
* * * * * * *
11385810 TGCCTCTCCGGCTTG-CTGAGCGCCCGCATGCTCATTTTATGGGTTAGCTT-AGGCATACGGAGT
324 TGCCTCCCCGAC-TGACTGAACGCCCGCACGCTCATTTCATGGGTTAGCTTAAGGCATACAGAAT
* * * *
11385873 TCATT-CTATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGATCGAGGGTTGT
388 TCATTGC-ATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGT
* *
11385937 GGTAGCAGGACCAGCAGCAGGATCGACAGCACGTAGAAAGGGATCGGGCCGATCCTGGGCTTG
452 GGCAGCAGGACCAGCAGCAGGATCGACAGCACGTAG-AAGGGATCGGGCCGATCCCGGG-TTG
* *
11386000 TGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCCAGTTTCATAGGTTGGCTTAGGCATAG
1 TGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCC-GTTTCATAGGTTGGCTTAGGCATAG
* ** * * ***
11386065 GGAGTTGATTCCATGTCTAATTCCTAGCCGGTTTGAGGGTTGTGGCAGCAAGACCGGTAGCACGC
65 GGAGTTAATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAAGACCGGTAGCACGC
* * * * * *
11386130 AGAGGGGGACCGGG-TCGATCCCCAGCTTGTGCATTATGCCTCTCCGG-CTGGCTCAGCGCCCGT
130 AGAAGGGGACCGGGCT-GATCCCCAACTCGCGCATTATGCCTCTCCGGTCT-GCTCAACGCCCGC
* * * * *
11386193 ACGCTTATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCCA-TCTAAGATCGGACCGGAC
193 ACGCTCACTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCCAGTCTAAGATCAGACCAGAC
* * * * * * *
11386257 TGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGGGGGGATAGGGTTGATCCCGGCTTACGCAT
257 TGAGGGTTGCGACAGCAAGATCAACAGCACGCAGGAGGGCATAGGGTCGATCCCGGCTTACGCAT
* * * *
11386322 TCTGCCTCCCCGACTGACTGAATGCCCTCACGCTCATTTCGTGGGTTGGCTTAAGGCATACAGAA
322 TCTGCCTCCCCGACTGACTGAACGCCCGCACGCTCATTTCATGGGTTAGCTTAAGGCATACAGAA
* * *
11386387 TTCATTGCATGTCTAAGCATACAGATTTCATTCCTAATCTAAGATCAGACCGGACCAAGGGTTGT
387 TTCATTGCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGT
* * ** *
11386452 GGCAGCAGGACCAGCAGTAGGATCGACAGTACGTAGGGGGGATCGGGCTGATCCCGGGTTG
452 GGCAGCAGGACCAGCAGCAGGATCGACAGCACGTAGAAGGGATCGGGCCGATCCCGGGTTG
** * * * ** * * *
11386513 CACATTCTGCCTCTCCGACCGGTTGAGCGCCCACACGCTTGTTTTGTCGGTTGGCTTAGGGATAC
1 TGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGC-CGTTTCATAGGTTGGCTTAGGCATAG
* ** * * *
11386578 GGAGTTCATTCCATGTCTAAGCCCCAGCTC-GATTGAGGGTTGTGGTAGCAGGATCGGTA
65 GGAGTTAATTCCATGTCTAAGCCCCAGC-CAGACCGAGGGTTGTGGCAGCAAGACCGGTA
11386637 ACGGGATCGA
Statistics
Matches: 533, Mismatches: 95, Indels: 20
0.82 0.15 0.03
Matches are distributed among these distances:
513 106 0.20
514 72 0.14
515 350 0.66
516 5 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (512 bp):
TGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCGTTTCATAGGTTGGCTTAGGCATAGG
GAGTTAATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAAGACCGGTAGCACGCA
GAAGGGGACCGGGCTGATCCCCAACTCGCGCATTATGCCTCTCCGGTCTGCTCAACGCCCGCACG
CTCACTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAG
GGTTGCGACAGCAAGATCAACAGCACGCAGGAGGGCATAGGGTCGATCCCGGCTTACGCATTCTG
CCTCCCCGACTGACTGAACGCCCGCACGCTCATTTCATGGGTTAGCTTAAGGCATACAGAATTCA
TTGCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGTGGCA
GCAGGACCAGCAGCAGGATCGACAGCACGTAGAAGGGATCGGGCCGATCCCGGGTTG
Found at i:11386261 original size:159 final size:159
Alignment explanation
Indices: 11386098--11386392 Score: 342
Period size: 159 Copynumber: 1.9 Consensus size: 159
11386088 CTAGCCGGTT
* ** * **
11386098 TGAGGGTTGTGGCAGCAAGACCGGTAGCACGCAGAGGGGGACCGGGTCGATCCCCAGCTTGTGCA
1 TGAGGGTTGCGGCAGCAAGACCGACAGCACGCAGAGGGGGACAGGGTCGAT-CCCAGCTTACGCA
* * * * * *
11386163 TTATGCCTCTCCGGCTGGCTCAGCGCCCGT-ACGCTTATTTCGTGGGTTGACTT-AGGCATACGG
65 TTATGCCTCCCCGACTGACTCAACGCCC-TCACGCTCATTTCGTGGGTTGACTTAAGGCATACAG
*
11386226 AGTTCATTCCCCATCTAAGATCGGACCGGAC
129 AATTCATTCCCCATCTAAGATCGGACCGGAC
* * * * * * *
11386257 TGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGGGGGGATAGGGTTGATCCCGGCTTACGCAT
1 TGAGGGTTGCGGCAGCAAGACCGACAGCACGCAGAGGGGGACAGGGTCGATCCCAGCTTACGCAT
* * * *
11386322 TCTGCCTCCCCGACTGACTGAATGCCCTCACGCTCATTTCGTGGGTTGGCTTAAGGCATACAGAA
66 TATGCCTCCCCGACTGACTCAACGCCCTCACGCTCATTTCGTGGGTTGACTTAAGGCATACAGAA
11386387 TTCATT
131 TTCATT
11386393 GCATGTCTAA
Statistics
Matches: 110, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
157 1 0.01
158 52 0.47
159 57 0.52
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (159 bp):
TGAGGGTTGCGGCAGCAAGACCGACAGCACGCAGAGGGGGACAGGGTCGATCCCAGCTTACGCAT
TATGCCTCCCCGACTGACTCAACGCCCTCACGCTCATTTCGTGGGTTGACTTAAGGCATACAGAA
TTCATTCCCCATCTAAGATCGGACCGGAC
Found at i:11386788 original size:26 final size:26
Alignment explanation
Indices: 11386758--11386808 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11386748 TGACTTAGGT
11386758 ATACGGAGTTCA-TCCCTAGTCTAAGC
1 ATACGGAGTTCATTCCC-AGTCTAAGC
11386784 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
11386809 ATTGACTCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:11387285 original size:159 final size:158
Alignment explanation
Indices: 11386782--11387286 Score: 458
Period size: 159 Copynumber: 3.2 Consensus size: 158
11386772 CCTAGTCTAA
* * * * * * * * ** * *
11386782 GCATACGGAGTTCATTCCCAGTCTAAGATTGACTCGGATCAAGGGTTGCGACAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCTAGTCTAAGA-TCAGTCGGACCGACGGTTACGGCAGCGGGACCGACA
* * * * * *
11386847 GCATG-TAGGGGGGATCGGGTCGATCCATGGCTTGCACATTCTACCTCTCCGACCAGCTGAGCAC
65 GCACGCAAGGGGGGATCGGGTCGATCCATGGCTTGCGCATTCTACCTCTCTGACCAGCTAAGCGC
11386911 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * * *** ** * *
11386940 GCATAAGGACTTCATTCCTTGTCTCAACCCCAGTCGGACCGACGGTTGTGGCAGCGGGCCCGATA
1 GCATACGGAGTTCATTCCTAGTCT-AAGATCAGTCGGACCGACGGTTACGGCAGCGGGACCGACA
* * * * * * * *
11387005 GCACGCAGGGGGGGATTGGGTCGATCCTTGGCTTGCGCATTATGCCTCT-TCGGCCAGCTCAGTG
65 GCACGCAAGGGGGGATCGGGTCGATCCATGGCTTGCGCATTCTACCTCTCT-GACCAGCTAAGCG
* * * *
11387069 CCCGCACGCTCGTTTTGTGGGTTGACTTAC
129 CCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * **
11387099 GTAAACGGAGTTCATTCCTAGTTTAAGATCAGAAT-GGACTGAGGGTTACGGCAGCGGGATTGAC
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAG--TCGGACCGACGGTTACGGCAGCGGGACCGAC
** * * *
11387163 AGCACGCAAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCTGACCGGTTAAGCG
64 AGCACGCAAGGGGGGATCGGGTCGATCCATGGCTTGCGCATTCTACCTCTCTGACCAGCTAAGCG
11387228 CCCGTACGCTCGTTTCGTGGGTTGGCTTAG
129 CCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* *
11387258 GCATACTGAGTTCATTCCTAGCCTAAGAT
1 GCATACGGAGTTCATTCCTAGTCTAAGAT
11387287 TTTAAGCCAC
Statistics
Matches: 266, Mismatches: 75, Indels: 11
0.76 0.21 0.03
Matches are distributed among these distances:
158 51 0.19
159 213 0.80
160 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGTCGGACCGACGGTTACGGCAGCGGGACCGACAG
CACGCAAGGGGGGATCGGGTCGATCCATGGCTTGCGCATTCTACCTCTCTGACCAGCTAAGCGCC
CGTACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:11387529 original size:26 final size:26
Alignment explanation
Indices: 11387500--11387552 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
11387490 GTTGACGTAG
*
11387500 GCATACAG-AGTTCATCCCCAGTCTAA
1 GCATA-AGTAGTTCATCCCCAATCTAA
* *
11387526 GCATATGTAGTTCATTCCCAATCTAA
1 GCATAAGTAGTTCATCCCCAATCTAA
11387552 G
1 G
11387553 GTCGAATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATAAGTAGTTCATCCCCAATCTAA
Found at i:11387873 original size:26 final size:26
Alignment explanation
Indices: 11387843--11387895 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11387833 GTTGGCTTAG
*
11387843 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
11387869 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11387895 G
1 G
11387896 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11388244 original size:159 final size:159
Alignment explanation
Indices: 11388077--11388374 Score: 346
Period size: 159 Copynumber: 1.9 Consensus size: 159
11388067 CCTAGCTGAT
* ** ** *
11388077 CTGAGGGTTGTGGCAGTGGGACCGGTAGCACGCAGAAGGGGATCGGGCCAATCCTC-GACTTGCG
1 CTGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAAGGGGATCGGGCCAATCCCCAG-CTTGCG
* ** * * ** *
11388141 AATTATGCCTCTCCGGCTGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGTATACGG
65 AATTATACCTCTCCAACTGACTCAGCGCCCGCACGCTCATTCCACAGGTTGACTTAGGCATACGG
11388206 AGTTCATTCCCCATCTAAGATCAGATCGAA
130 AGTTCATTCCCCATCTAAGATCAGATCGAA
* * ** *** *
11388236 CTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGGATCGGGTTGATCCCCAGCTTGCGC
1 CTGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAAGGGGATCGGGCCAATCCCCAGCTTGCGA
* * * *
11388301 ATTCTACCTCTCCAACTGACTGAGCGCCCGTACGCTCATTCCACAGGTTGGCTTAGGCATACGGA
66 ATTATACCTCTCCAACTGACTCAGCGCCCGCACGCTCATTCCACAGGTTGACTTAGGCATACGGA
11388366 GTTCATTCC
131 GTTCATTCC
11388375 ATGTCTAAGC
Statistics
Matches: 112, Mismatches: 26, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
159 111 0.99
160 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
CTGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAAGGGGATCGGGCCAATCCCCAGCTTGCGA
ATTATACCTCTCCAACTGACTCAGCGCCCGCACGCTCATTCCACAGGTTGACTTAGGCATACGGA
GTTCATTCCCCATCTAAGATCAGATCGAA
Found at i:11388407 original size:26 final size:26
Alignment explanation
Indices: 11388357--11388409 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11388347 GTTGGCTTAG
*
11388357 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
11388383 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
11388409 G
1 G
11388410 AATGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:11389125 original size:159 final size:156
Alignment explanation
Indices: 11388763--11389252 Score: 485
Period size: 159 Copynumber: 3.1 Consensus size: 156
11388753 TCCAATCTAA
*
11388763 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGTAGGATC-AGC
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGACAGTAGGATCGA-C
* *
11388827 AGCATGCAGGGGGGATCGGGCCGAT-CCTCGGCTTGCGCATTCTTCCTC-TCCGGCTGGCTGAGC
65 AGCATGCAGGGGGGATCGGGCCGATCCCT-GGCTTGCGCA-T-TTCCTCTTCAGTC-GGCTGAGC
* * *
11388890 ACCCACAAGC-CTGTTTCATGGGTTGGCTTAG
126 GCCCACACGCTC-GTTTCGTGGGTTGGCTTAG
* * * ** * * * * ** *
11388921 GCATAGGGAGTTCATT-CCATATCTCAG-CCCCAGCCAGACTGAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-ATCTAAGATCGGA-CCGGACCGAGGGTTGCGACAGTAGGATCGA
* * * *
11388984 CAGCATGCAGAGGGGGATCGGGCCGATCCCTGGCTTGTGCATTATGCCTCTTCAGTCGACTCAGT
64 CAGCATGCAG-GGGGGATCGGGCCGATCCCTGGCTTGCGCATT-T-CCTCTTCAGTCGGCTGAGC
* *
11389049 GCCCACACGCTCGTTTCGTGGGTTGACTTAT
126 GCCCACACGCTCGTTTCGTGGGTTGGCTTAG
* *
11389080 GCAAACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGACAGTAGGATCGACA
* * * ** * * *
11389145 GCACGTAGGAGGGGATTGGGTGGGTCCC-GGACTTGCGCA-TT-CTATCCAGTCGGCTGAGCGCC
66 GCATGCAGG-GGGGATCGGGCCGATCCCTGG-CTTGCGCATTTCCTCTTCAGTCGGCTGAGCGCC
*
11389207 CGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CACACGCTCGTTTCGTGGGTTGGCTTAG
11389235 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
11389253 ATGTCTAACC
Statistics
Matches: 265, Mismatches: 54, Indels: 29
0.76 0.16 0.08
Matches are distributed among these distances:
155 58 0.22
157 7 0.03
158 57 0.22
159 130 0.49
160 13 0.05
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGACAGTAGGATCGACA
GCATGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTTCCTCTTCAGTCGGCTGAGCGCCCA
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:11389286 original size:26 final size:26
Alignment explanation
Indices: 11389236--11389286 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11389226 TTGGCTTAGG
*
11389236 CATACGGAGTTCATTCCATGTCTAAC
1 CATACGGAGTTCATTCCATGCCTAAC
11389262 CATACGGAGTTCATTCC-TAGCCTAA
1 CATACGGAGTTCATTCCAT-GCCTAA
11389287 GATTTTAAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATGCCTAAC
Found at i:11391565 original size:159 final size:156
Alignment explanation
Indices: 11391245--11392558 Score: 553
Period size: 158 Copynumber: 8.1 Consensus size: 156
11391235 CTGGTTTCTT
* * * *
11391245 GAGTTCATTCCCAGTCTAAGATC-GAACCGGACCGAAGGTTGCGGCAGCAGGATCGACAGCACGC
1 GAGTTCATTCCCAGTCTAAGACCAG-ACCAGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGC
* * * * * *
11391309 AGGGGGGATCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTAAGCGCCCGCACG
65 AGGGGGGACCGGGTC-ATCCC-GGCTTGCACATTATGCCTCTCCGGCCGACTAAGCGCCCGCACG
* * *
11391374 CCCGTTTCATGGGTTGGCTTAGGCATAGG
128 CTCGTTTCGTGGGTTGGCTTAGGCATACG
* * *
11391403 GAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGC-GAGATCGGTAGCAC
1 GAGTTCATTCCCA-GTCTAAG-ACCAGACCAGACCGAGGGTTGCGGCAGCAG-GATCGATAGCAC
* * * * *
11391465 ACAGAGGGGGACCGGGTCGATCCTCGGCATGCACATTATGCCTCTTCGGCCGACTTAGCGCCCGT
63 GCAG-GGGGGACCGGGTC-ATCC-CGGCTTGCACATTATGCCTCTCCGGCCGACTAAGCGCCCGC
* *
11391530 ACGCTCGTTTCGCGGGTTGACTTAGGCATACG
125 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* * * * * *
11391562 GAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGCAGGATCGATAGCACGTA
1 GAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCA
* * * * * *
11391627 GGGGGGACCGGGTCAGTCCCCGGCTTGCACATTTTACCTCTCCGACCGACTAAGAGCCCCCACGT
66 GGGGGGACCGGGTCA-T-CCCGGCTTGCACATTATGCCTCTCCGGCCGACTAAGCGCCCGCACGC
*
11391692 TCGTTTCGTGGGTTGGCTTAGGCATAAGCATACA
129 TCGTTTCGTGGGTTGGCTTA-G-----GCATACG
** * *
11391726 GAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGTGTTACGGTAGCAGGACCAGCAGTAAGAT
1 GAGTTCATTCCCAGTCTAAGACCAGACCAGACCGA--G----GGTTGC-GG--CAGCAG---GAT
* * * * * * * * * * * ** *
11391791 CGGTAGCATGTAAGAGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCAGTCGGTTGA
54 CGATAGCACGCAGGGGGGACCGGGTC-AT-CCCGGCTTGCACATTATGCCTCTCCGGCCGACTAA
* ** * * *
11391856 GTGTTCGCATGCTCGTTTCGTTGGTTGGCTTAGTCATACG
117 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* * * * * ** *
11391896 GAGTTCATT-CGATGTCTAAGCCCCA-ATCGGACAGAGGGTTATGGTAGCAGGACCGATAGCGGG
1 GAGTTCATTCCCA-GTCTAAG-ACCAGACCAGACCGAGGGTTGCGGCAGCA-G---GAT--C--G
* ** * * **
11391959 ATCAGCAACACGCAGAGGGGGACCGGGTTGATCCTCGATTTACGCATTATGCCTCTCCGGCCGGT
56 AT-AG---CACGCAG-GGGGGACCGGG-TCATCC-CGGCTTGCACATTATGCCTCTCCGGCCGAC
* * * * * * *
11392024 TGAGCACCCACACGCTCGTCTCATGGGTTGACTTAGGCATACA
114 TAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* ** ** * * *
11392067 GAGTTCA-TCCCTAATCTAA-A-CAGATGGAGTTC-A---TT-C-CCAGTCTAAGATCGGACCAG
1 GAGTTCATTCCC-AGTCTAAGACCAGA-CCAGACCGAGGGTTGCGGCAG-C-AGGATC-GA-TAG
* ** ** * * * ** * ** * * * * *
11392123 -AC-CGAGGGTTGCGATAGCATGATCGACAGCAAGCGCATGCTGCCTCTCCGACTGGCTGAGTGC
60 CACGC-AGGG--GGGACCGGGTCATC-CCGGCTTGCACATTATGCCTCTCCGGCCGACTAAGCGC
* * *
11392186 CCACACG-TCCGTTTCATGGGTTGGCTTAGGCATAGG
121 CCGCACGCT-CGTTTCGTGGGTTGGCTTAGGCATACG
* * * * * *
11392222 GAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCAAGGGTAGTGGCAGCAGGATCGGTAGCACG
1 GAGTTCATTCCCA-GTCTAAG-ACCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGATAGCACG
* * * * * * * * *
11392285 CAGTGGGGGACCGGGCCGATCCTGGCTTGCGCATTACGCCTCTCTGACCGGCTCAGCGCCCGCAT
64 CAG-GGGGGACCGGGTC-ATCCCGGCTTGCACATTATGCCTCTCCGGCCGACTAAGCGCCCGCAC
* * *
11392350 GCTCGTTTCATGGGTTGACTTAGGCATACA
127 GCTCGTTTCGTGGGTTGGCTTAGGCATACG
* * * *
11392380 GAGTTCATTCGCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGATAGCATGCA
1 GAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCA
* * * * ** * * ** ** *
11392445 GGAGGTGATCAGGCCGATCCTCGGCTTGTGCATTCTGGCTCTCCGATCGACTTTGCGCTCGCACG
66 GG-GGGGACCGGGTC-ATCC-CGGCTTGCACATTATGCCTCTCCGGCCGACTAAGCGCCCGCACG
*
11392510 CTCGTTTCATGGGTTGGCTTAGGCATACG
128 CTCGTTTCGTGGGTTGGCTTAGGCATACG
* *
11392539 GAGTTCATTCCAAGTGTAAG
1 GAGTTCATTCCCAGTCTAAG
11392559 CATATGGAGC
Statistics
Matches: 861, Mismatches: 219, Indels: 151
0.70 0.18 0.12
Matches are distributed among these distances:
154 5 0.01
155 77 0.09
156 7 0.01
157 10 0.01
158 244 0.28
159 217 0.25
160 16 0.02
161 5 0.01
162 10 0.01
163 2 0.00
164 44 0.05
165 1 0.00
166 6 0.01
167 2 0.00
168 3 0.00
169 4 0.00
170 42 0.05
171 81 0.09
172 2 0.00
173 5 0.01
175 1 0.00
176 76 0.09
177 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCA
GGGGGGACCGGGTCATCCCGGCTTGCACATTATGCCTCTCCGGCCGACTAAGCGCCCGCACGCTC
GTTTCGTGGGTTGGCTTAGGCATACG
Found at i:11391712 original size:158 final size:158
Alignment explanation
Indices: 11391245--11391777 Score: 552
Period size: 159 Copynumber: 3.3 Consensus size: 158
11391235 CTGGTTTCTT
* * *
11391245 GAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAAGGTTGCGGCAGCAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCA
* * * * * * * *
11391310 GGGGGGATCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTAAGCGCCCGCACGC
66 GGGGGGACCGGGTCAGTCCCCGGCTTGCACATTATGCCTCTCCGGCCGACTAAGCGCCCGCACGC
* * *
11391375 CCGTTTCATGGGTTGGCTTAGGCATAGG
131 TCGTTTCGTGGGTTGGCTTAGGCATACG
* ** * * *
11391403 GAGTTCATT-CCATGTCTAAG-CCCCAGCCAGACCGAGGGTTGTGGCAGC-GAGATCGGTAGCAC
1 GAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGCGGCAGCAG-GATCGATAGCAC
* * * * *
11391465 ACAGAGGGGGACCGGGTC-GATCCTCGGCATGCACATTATGCCTCTTCGGCCGACTTAGCGCCCG
63 GCAG-GGGGGACCGGGTCAG-TCCCCGGCTTGCACATTATGCCTCTCCGGCCGACTAAGCGCCCG
* * *
11391529 TACGCTCGTTTCGCGGGTTGACTTAGGCATACG
126 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* * *
11391562 GAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGCAGGATCGATAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCA
* * * * * *
11391627 GGGGGGACCGGGTCAGTCCCCGGCTTGCACATTTTACCTCTCCGACCGACTAAGAGCCCCCACGT
66 GGGGGGACCGGGTCAGTCCCCGGCTTGCACATTATGCCTCTCCGGCCGACTAAGCGCCCGCACGC
*
11391692 TCGTTTCGTGGGTTGGCTTAGGCATAAGCATACA
131 TCGTTTCGTGGGTTGGCTTA-G-----GCATACG
** * * *
11391726 GAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGTGTTACGGTAGCAGGA
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGA
11391778 CCAGCAGTAA
Statistics
Matches: 304, Mismatches: 56, Indels: 24
0.79 0.15 0.06
Matches are distributed among these distances:
157 6 0.02
158 117 0.38
159 122 0.40
160 6 0.02
164 53 0.17
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.21
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCA
GGGGGGACCGGGTCAGTCCCCGGCTTGCACATTATGCCTCTCCGGCCGACTAAGCGCCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATACG
Found at i:11392562 original size:26 final size:26
Alignment explanation
Indices: 11392532--11392584 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11392522 GTTGGCTTAG
* * *
11392532 GCATACGGAGTTCATTCCAAGTGTAA
1 GCATACGGAGCTCATTCAAAGTCTAA
*
11392558 GCATATGGAGCTCATTCAAAGTCTAA
1 GCATACGGAGCTCATTCAAAGTCTAA
11392584 G
1 G
11392585 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCAAAGTCTAA
Found at i:11392928 original size:26 final size:26
Alignment explanation
Indices: 11392899--11392951 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
11392889 GTTGACTTAG
11392899 GCATACAGAGTTCATCCC-CAGTCTAA
1 GCATACAGAGTTCA-CCCTCAGTCTAA
** *
11392925 GCATATGGTGTTCACCCTCAGTCTAA
1 GCATACAGAGTTCACCCTCAGTCTAA
11392951 G
1 G
11392952 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 3 0.13
26 20 0.87
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCACCCTCAGTCTAA
Found at i:11392949 original size:839 final size:839
Alignment explanation
Indices: 11391336--11393530 Score: 2191
Period size: 839 Copynumber: 2.6 Consensus size: 839
11391326 TCCCTGGCTT
* * *
11391336 GCGCATTCTGCCTCTCCGGCTGGCTAAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
1 GCGCATGCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
*
11391401 GGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGC-GAGATCGGTAGCAC
66 GGGAGTTCATTCCATGTCTAAGCCCCAGCC-GACC-AGGGTAGTGGCAGCAG-GATCGGTAGCAC
* * * * * * *
11391465 ACAGAGGGGGACCGGGTCGATCCTCGGCATGCACATTATGCCTCT-TCGGCCGACTTAGCGCCCG
128 GCAGTGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCT-GGCCGGCTCAGCGCCCG
* * * * *
11391529 TACGCTCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAT
192 AACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* * * * **
11391594 CGAGGGTTGCGGTAGCAGGATCGATAGCACGTAGGGGGGACCGGGTC-AGTCCCCGGCTTGCACA
257 CGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGGGGGGAACGGGCCGA-T-CCCGGCTTGTGCA
* * * * *
11391658 TTTTACCTCTCCGACCGACTAAGAGCCCCCACGTTCGTTTCGTGGGTTGGCTTAGGCATA---AG
320 TTCTGCCTCTCCGA-CGACTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
* ** * * *
11391720 --CA-TACAGAGTT---CAT-T----C-C---C-AGTCTAAGATTAGACCGGACCGAGTGTTACG
384 TTCATTCCA-AGTTAAGCATATGGAGCTCATTCAAGTCTAAGATCGGACCGGACCAAGGGTTGCG
* * * * * * * *
11391769 GTAGCAGGACCAGCAGTAAGATCGGTAGCATGTAAGAGGGACTGGG-TCGATCCCCAGCTTGCGC
448 GCAGCAGGACCAGCAGCAGGATCGGCAGCACGTAGGGGGGACCGGGCT-GATCCCCAGCTTGCGC
* ** **** * * * * * *
11391833 ATTCTGCCTCTCCAGTCGGTTGAGTGTTCGCATGCTCGTTTCGTTGGTTGGCTTAGTCATACGGA
512 ATTCTGCCTCTCCAGCCGACTGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACAGA
* * * * *
11391898 GTTCATTCGATGTCTAAGCCCCAATCGGACAGAGGGTTATGGTAGCAGGACCGATAGCGGGATCA
577 GTTCATTCGATGTCTAAGCACCAATCGAACAGAGGGTTATGGCAACAGGACCGACAGCGGGATCA
* * * ** * *
11391963 GCAACACGCAGAGGGGGACCGGGTTGATCCTCGATTTACGCATTATGCCTCTCCGGCCGGTTGAG
642 GCAACACGCAGAGGGGGACAGGGCTGATCCCCGAGCTACGCATTAAGCCTCTCCGGCCGGCTGAG
* *
11392028 CACCCACACGCTCGTCTCATGGGTTGACTTAGGCATACAGAGTTCATCCCTAATCTAAACAGATG
707 CACCCACACGCTCGTCTCAGGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAACAGATG
* * *
11392093 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGATAGCATGATC-G-A-CA-GCA
772 GAGTTCATCCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGGTAGCACGCA
11392154 -A-
837 GAC
* * *
11392155 GCGCATGCTGCCTCTCCGACTGGCTGAGTGCCCACACGTCCGTTTCATGGGTTGGCTTAGGCATA
1 GCGCATGCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
11392220 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTAGTGGCAGCAGGATCGGTAGCACG
66 GGGAGTTCATTCCATGTCTAAGCCCCAGCC-GACC-AGGGTAGTGGCAGCAGGATCGGTAGCACG
* * *
11392285 CAGTGGGGGACCGGGCCGATCCT-GGCTTGCGCATTACGCCTCTCTGACCGGCTCAGCGCCCGCA
129 CAGTGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCTGGCCGGCTCAGCGCCCGAA
* * * * *
11392349 TGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCGCAGTCTAAGATCAGATCAGACCG
194 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
* * * *
11392414 AGGGTTGCGGCAGCAGGATCGATAGCATGCAGGAGGTGATCAGGCCGATCCTCGGCTTGTGCATT
259 AGGGTTGCGGCAGCAGGATCGATAGCACGCAGG-GGGGAACGGGCCGATCC-CGGCTTGTGCATT
* ** * *
11392479 CTGGCTCTCCGATCGACTTTGCGCTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
322 CTGCCTCTCCGA-CGACTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
11392544 CATTCCAAGTGTAAGCATATGGAGCTCATTCAAAGTCTAAGATCGGACCGGACCAAGGGTTGCGG
386 CATTCCAAGT-TAAGCATATGGAGCTCATTC-AAGTCTAAGATCGGACCGGACCAAGGGTTGCGG
** * * * **
11392609 CAATACGACCAGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCTGGCTTGCGCAT
449 CAGCAGGACCAGCAGCAGGATCGGCAGCACGTAGGGGGGACCGGGCTGATCCCCAGCTTGCGCAT
11392674 TCTGCCTCTCC-GACCGACTGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAG
514 TCTGCCTCTCCAG-CCGACTGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAG
* * *
11392738 TTCATTTC-ATGTCTAAGCACCAATCGAATC-GAGGGTTCTGGCAACAGGACCGGCAGCGGTATC
578 TTCA-TTCGATGTCTAAGCACCAATCGAA-CAGAGGGTTATGGCAACAGGACCGACAGCGGGATC
* ** * *
11392801 GGCGGCACGCAGAGGGGGACAGGGCTGATCCCCG-GCTAGTGCATTAAGCCTCTCCGGTCGGCTG
641 AGCAACACGCAGAGGGGGACAGGGCTGATCCCCGAGCTA-CGCATTAAGCCTCTCCGGCCGGCTG
* * * * * *
11392865 AGCACCCGCACGCTCTTTTCAGGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATA
705 AGCACCCACACGCTCGTCTCAGGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAACAGA
* * * *
11392930 TGGTGTTCA-CCCTCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGTAGGATCGGTAGCAC
770 TGGAGTTCATCCC-CAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGGTAGCAC
11392994 GCAGGGGGGACC
834 GCA-----GA-C
* * * * *
11393006 GGGCTGATCCTCGGCTTGTACATTCTGCC-TCTTTGGCCAGTTGAGCACCCGCACGCCCGTTTCG
1 --GC-G--CAT--GC-TG--C-CTCT-CCGAC--TGG-C---TGAGCGCCCGCACGCCCGTTTCA
* * *
11393070 TGGGTTCGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA----ATCA--G-A----CCG
48 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGACCAGGGTAGTGGCAG
* * * * * * *
11393124 AAGG-T-TGT-G---GCAGT--GGGATCGGGCTGATCCTCGACTTGCGCATTATGCCTCTCCGGT
113 CAGGATCGGTAGCACGCAGTGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCTGGC
* * *
11393181 CGGCTCAGCACCCGAACGCTCGTTTTGTGGGTTGACTTAGGCATACACAGTTCATTCCCAGTCTA
178 CGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
* * *
11393246 AGATCAGACCGGACCGAAGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGGAACGGGCCGATC
243 AGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGGGGGGAACGGGCCGATC
* * * *
11393311 CCTGACTTGTGCATTCTGCCTCTTCGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
308 CC-GGCTTGTGCATTCTGCCTCTCCGAC-GACTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
* * * *
11393376 TAGGCATACGGAGTTCATTCCATGTCTAAGCTTACGGAGTTCATTCCCAA-TCTAAGATCGGACC
371 TAGGCATACGGAGTTCATTCCAAGT-TAAGCATATGGAGCTCATT--CAAGTCTAAGATCGGACC
* *
11393440 GGACCAAGGGTTGCGACAGCAGGACCAGCAGCAGGATCGGCAGCACGTAGGGGGG-CTTCGGGCC
433 GGACCAAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGGCAGCACGTAGGGGGGAC--CGGGCT
*
11393504 GATCCCCAGCTTGCACATTCTGCCTCT
496 GATCCCCAGCTTGCGCATTCTGCCTCT
11393531 TCGGTCGGCC
Statistics
Matches: 1131, Mismatches: 176, Indels: 109
0.80 0.12 0.08
Matches are distributed among these distances:
818 120 0.11
819 207 0.18
820 2 0.00
822 2 0.00
824 5 0.00
825 4 0.00
828 3 0.00
829 1 0.00
833 1 0.00
834 1 0.00
837 1 0.00
838 5 0.00
839 325 0.29
840 6 0.01
841 1 0.00
842 2 0.00
843 3 0.00
846 3 0.00
847 184 0.16
848 152 0.13
849 7 0.01
852 1 0.00
853 4 0.00
854 2 0.00
855 5 0.00
856 2 0.00
858 2 0.00
859 3 0.00
860 1 0.00
861 1 0.00
862 5 0.00
863 4 0.00
864 3 0.00
865 1 0.00
868 62 0.05
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (839 bp):
GCGCATGCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
GGGAGTTCATTCCATGTCTAAGCCCCAGCCGACCAGGGTAGTGGCAGCAGGATCGGTAGCACGCA
GTGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCTGGCCGGCTCAGCGCCCGAACG
CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
GGTTGCGGCAGCAGGATCGATAGCACGCAGGGGGGAACGGGCCGATCCCGGCTTGTGCATTCTGC
CTCTCCGACGACTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
CAAGTTAAGCATATGGAGCTCATTCAAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGG
ACCAGCAGCAGGATCGGCAGCACGTAGGGGGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCT
CTCCAGCCGACTGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCG
ATGTCTAAGCACCAATCGAACAGAGGGTTATGGCAACAGGACCGACAGCGGGATCAGCAACACGC
AGAGGGGGACAGGGCTGATCCCCGAGCTACGCATTAAGCCTCTCCGGCCGGCTGAGCACCCACAC
GCTCGTCTCAGGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAACAGATGGAGTTCATC
CCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGGTAGCACGCAGAC
Found at i:11393429 original size:26 final size:26
Alignment explanation
Indices: 11393382--11393431 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
11393372 GGCTTAGGCA
*
11393382 TACGGAGTTCATTCCATGTCTAAGCT
1 TACGGAGTTCATTCCATATCTAAGCT
11393408 TACGGAGTTCATTCCCA-ATCTAAG
1 TACGGAGTTCATT-CCATATCTAAG
11393432 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCATATCTAAGCT
Found at i:11393814 original size:26 final size:26
Alignment explanation
Indices: 11393776--11393825 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
11393766 GGCTTAGCCT
11393776 TACGGAGTACATTCC-ATGTCTAAGCA
1 TACGGAGTACATTCCTA-GTCTAAGCA
*
11393802 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTACATTCCTAGTCTAAG
11393826 ATCGGACCGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTACATTCCTAGTCTAAGCA
Found at i:11394163 original size:26 final size:26
Alignment explanation
Indices: 11394127--11394178 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11394117 TTGGCTTAGA
11394127 CATACGAAGTTCATTCC-ATGTCTAAG
1 CATACGAAGTTCATTCCTA-GTCTAAG
*
11394153 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGAAGTTCATTCCTAGTCTAAG
11394179 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
CATACGAAGTTCATTCCTAGTCTAAG
Found at i:11394478 original size:355 final size:353
Alignment explanation
Indices: 11393623--11394508 Score: 1048
Period size: 353 Copynumber: 2.5 Consensus size: 353
11393613 AAGCATATGG
* * * * * *
11393623 AGTTCATTCCCAGCCTAAGATCAGATCGGACCGAGGGTTGCGAGAGCAGGATGGGCAGAACGTAG
1 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAAGATCGGAAGCACGTAG
* *
11393688 GGGGGACCGGG-TCGATCCCCAGCTTGCGCATTCTGCCTCTCTGG-CAGGTTGAGCGCCCGCACG
66 GGGGGACCGGGCT-GATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCA-GCTGAGCGCCCGCACG
* * * * *
11393751 TTCGTTTCGTGGGTTGGCTTAGCCTTACGGAGTACATTCCATGTCTAAGCATACGGAGTTCATTC
129 CTCATTTCGTGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
* * * * *
11393816 CTAGTCTAAGATCGGACCGAATCGAGGGTTACGATAGCAGGACCAGCTGCAGGATCGACAGCACG
194 CTAGTCTAAGATCAGACCGAACCGAGGGTTACGATAGCAGGACCAACAGCAGGATCGACAGCACC
* * * * * *
11393881 CAGGAGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCACCGATCGGCTCAGCGCTCGTAC
259 CAGGAGGGACCGGGCCGATCCCTGACTTGCGCATTATACCTCACCGACCGGCTCAACGCTCGCAC
* *
11393946 GCTCGTTTTATGGGTTGACTTAGGCATAGG
324 GCTCGTTTCATGGGTTGACTTAGGCATAGA
* * * * **
11393976 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGATAGCAAGATC-GACAGCACACA
1 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAAGATCGGA-AGCACGTA
** * * * * * * * *
11394040 GGGGGGATTGGACCGGTCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGTCTGCACGC
65 GGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCAGCTGAGCGCCCGCACGC
*
11394105 TCATTTCGTGGGTTGGCTTAGACATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCC
130 TCATTTCGTGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCC
* * * * **
11394170 TAGTCTAAGATCAGACTGGACCGAGGGTTGCGATAGCAGGACCAACAGTAGGATCGGTAGCACCC
195 TAGTCTAAGATCAGACCGAACCGAGGGTTACGATAGCAGGACCAACAGCAGGATCGACAGCACCC
* * ** *
11394235 AGGGGGGCACCGGGCCGAT-CCTCGACTTAG-GCATTCTACCTTTCCGACCGGCTGAACGC-CTG
260 AGGAGGG-ACCGGGCCGATCCCT-GACTT-GCGCATTATACCTCACCGACCGGCTCAACGCTC-G
* *
11394297 CACGCTTGTTTCGTGGGTTGACTTAGGCATACGA
321 CACGCTCGTTTCATGGGTTGACTTAGGCATA-GA
* ** * *
11394331 AGTTCATCCCCAGTCTAAGATCTA-ATCGGATTGAGGGTTGCTACAGCAAGATCGGAAGCATGTA
1 AGTTCATTCCCAGTCTAAGATC-AGATCGGACCGAGGGTTGCGACAGCAAGATCGGAAGCACGTA
*
11394395 GGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCAGCTGAGAGCCCGCACGC
65 GGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCAGCTGAGCGCCCGCACGC
* * * *
11394460 CCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
130 TCATTTCGTGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCTAAGC
11394509 CCCAGTCGGA
Statistics
Matches: 441, Mismatches: 82, Indels: 18
0.82 0.15 0.03
Matches are distributed among these distances:
352 1 0.00
353 224 0.51
354 65 0.15
355 148 0.34
356 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (353 bp):
AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAAGATCGGAAGCACGTAG
GGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCAGCTGAGCGCCCGCACGCT
CATTTCGTGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCT
AGTCTAAGATCAGACCGAACCGAGGGTTACGATAGCAGGACCAACAGCAGGATCGACAGCACCCA
GGAGGGACCGGGCCGATCCCTGACTTGCGCATTATACCTCACCGACCGGCTCAACGCTCGCACGC
TCGTTTCATGGGTTGACTTAGGCATAGA
Found at i:11394617 original size:159 final size:160
Alignment explanation
Indices: 11394227--11394996 Score: 612
Period size: 158 Copynumber: 4.8 Consensus size: 160
11394217 GTAGGATCGG
* * * * * * *
11394227 TAGCACCCAG-GGGGGCACCGGGCCGATCCTCGACTTAG-GCATTCTACCTTTCCGACCGGCTGA
1 TAGCACGCAGAGGGGG-ACCGGGCTGATCCCCGGCTT-GCGCATTCTGCCTCTCCGATCGGCTGA
* * ** * * * ** *
11394290 ACGCCTGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCA-GTCTAAGATCT
64 GCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCCCC
* ** * * * *
11394354 AATCGGATTGAGGGTTGCT-ACAG-CAAGATCGGA
128 AACCGGACCGAGGGTTG-TGGCAGTGAGGA-CCGA
* * * ** * *
11394387 -AGCATGTAG-GGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCAGCTGAGA
1 TAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
* * * **
11394450 GCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGT
66 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAAC
11394515 CGGACCGAGGGTTGTGGCAGTGA-GACC-A
131 CGGACCGAGGGTTGTGGCAGTGAGGACCGA
* * *
11394543 GTAGCACGCAGAGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGATCTGCTGGG
1 -TAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAG
* ** * * * **
11394608 TGCCCGCACGCTGGTTTTGTGGGTTGGCTTAGGTATACAGAGTTCATTCCATGTCTAAGCCGTAA
65 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAA
*
11394673 CCGGACCGAGGGTTGTGGTAGCAGGATCGGCAATGGGATCGA
130 CCGGACCGAGGGTTGT-G--GCA-G-T--G--A--GGACCGA
* * * *
11394715 CAGCACGCAGAAGGGGACCGGCCTGATCCCCGGCTTGCGCATTAC-GCCTCTCCGATCGGCTTAG
1 TAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATT-CTGCCTCTCCGATCGGCTGAG
* * ** *
11394779 CACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGA
65 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCA
* * ** *
11394843 ACCGAACCAAGGGTTACGGCAG-CAGGACCGA
129 ACCGGACCGAGGGTTGTGGCAGTGAGGACCGA
* * * * * * * * * *
11394874 TAGCACGTAG-GGGGGATCAGGCCGGTCCCCGGCTTGCACATACTACCTCTTCGATCGGCTTAGC
1 TAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
* *
11394938 GCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCCTTCCATGTCTAAGC
66 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
11394997 ATATGGGGTT
Statistics
Matches: 491, Mismatches: 95, Indels: 50
0.77 0.15 0.08
Matches are distributed among these distances:
156 1 0.00
157 10 0.02
158 201 0.41
159 141 0.29
160 1 0.00
161 1 0.00
162 3 0.01
163 1 0.00
164 1 0.00
166 1 0.00
167 1 0.00
168 4 0.01
170 1 0.00
171 119 0.24
172 5 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (160 bp):
TAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAAC
CGGACCGAGGGTTGTGGCAGTGAGGACCGA
Found at i:11394812 original size:330 final size:329
Alignment explanation
Indices: 11394397--11394996 Score: 742
Period size: 330 Copynumber: 1.8 Consensus size: 329
11394387 AGCATGTAGG
* * *
11394397 GGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCAGCTGAGAGCCCGCACGCCC
1 GGGGACCGGCCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGAGCCCGCACGCCC
* * * ** * *
11394462 ATTTCATGGGTTGGCTTAGGCATATGGAGTTCATT-CCATGTCTAAGCCCCAGTCGGACCGAGGG
66 ATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGACCCAACCGAACCAAGGG
** * * * * *
11394526 TTGTGGCAG-TGAGACC-AGTAGCACGCAGAGGGGGACCGGGCTGATCCCCGACTTGCGCATTCT
130 TTACGGCAGCAG-GACCGA-TAGCACGCAG-GGGGGACCAGGCCGATCCCCGACTTGCACATACT
* * * * * ** * *
11394589 GCCTCTCCGATCTGCTGGGTGCCCGCACGCTGGTTTTGTGGGTTGGCTTAGGTATACAGAGTTCA
192 ACCTCTCCGATCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCA
11394654 TTCCATGTCTAAGCCGTAACCGGACCGAGGGTTGTGGTAGCAGGATCGGCAATGGGATCGACAGC
257 TTCCATGTCTAAGCCGTAACCGGACCGAGGGTTGTGGTAGCAGGATCGGCAATGGGATCGACAGC
11394719 ACGCAGAA
322 ACGCAGAA
* * *
11394727 GGGGACCGGCCTGATCCCCGGCTTGCGCATTAC-GCCTCTCCGATCGGCTTAGCA-CCCGCACGC
1 GGGGACCGGCCTGATCCCCGGCTTGCGCATT-CTGCCTCTCCGACCAGCTGAG-AGCCCGCACGC
* * * *
11394790 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCAAGG
64 CCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCCAACCGAACCAAGG
* * * *
11394855 GTTACGGCAGCAGGACCGATAGCACGTAGGGGGGATCAGGCCGGTCCCCGGCTTGCACATACTAC
129 GTTACGGCAGCAGGACCGATAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCACATACTAC
* * * *
11394920 CTCTTCGATCGGCTTAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCCTT
194 CTCTCCGATCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT
11394985 CCATGTCTAAGC
259 CCATGTCTAAGC
11394997 ATATGGGGTT
Statistics
Matches: 224, Mismatches: 41, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
329 93 0.42
330 124 0.55
331 7 0.03
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (329 bp):
GGGGACCGGCCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGAGCCCGCACGCCC
ATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCCAACCGAACCAAGGGT
TACGGCAGCAGGACCGATAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCACATACTACCT
CTCCGATCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCC
ATGTCTAAGCCGTAACCGGACCGAGGGTTGTGGTAGCAGGATCGGCAATGGGATCGACAGCACGC
AGAA
Found at i:11394837 original size:171 final size:159
Alignment explanation
Indices: 11394396--11394996 Score: 545
Period size: 159 Copynumber: 3.7 Consensus size: 159
11394386 AAGCATGTAG
* * ** * * *
11394396 GGGGGACCGGGCTGATCCCCGGCTTGCGCATT-CTGCCTCTCTGGCCAGCTGAGAGCCCGCACGC
1 GGGGGACCGGCCTGATCCCCGGCTTGCGCATTACTGCCTCTCCGATCGGCTTAGCGCCCGCACGC
* * * * ** * *
11394460 CCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGG
66 TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCGAACCGAACCAAGG
** * *
11394525 GTTGTGGCAG-TGAGACC-AGTAGCACGCAGA
130 GTTACGGCAGCAG-GACCGA-CAGCACGCAGA
* * * ** *
11394555 GGGGGACCGGGCTGATCCCCGACTTGCGCATT-CTGCCTCTCCGATCTGCTGGGTGCCCGCACGC
1 GGGGGACCGGCCTGATCCCCGGCTTGCGCATTACTGCCTCTCCGATCGGCTTAGCGCCCGCACGC
** * * * * *
11394619 TGGTTTTGTGGGTTGGCTTAGGTATACAGAGTTCATTCCATGTCTAAGCCGTAACCGGACCGAGG
66 TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCG-AACCGAACC-AAG
* *
11394684 GTTGTGGTAGCAGGATCGGCAATGGGATCGACAGCACGCAGA
129 G--GT--TA-C-GG--CAGC-A--GGACCGACAGCACGCAGA
* *
11394726 AGGGGACCGGCCTGATCCCCGGCTTGCGCATTAC-GCCTCTCCGATCGGCTTAGCACCCGCACGC
1 GGGGGACCGGCCTGATCCCCGGCTTGCGCATTACTGCCTCTCCGATCGGCTTAGCGCCCGCACGC
* *
11394790 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCGAACCAAG
66 TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG-CCGAACCGAACCAAG
* *
11394854 GGTTACGGCAGCAGGACCGATAGCACGTAG-
129 GGTTACGGCAGCAGGACCGACAGCACGCAGA
* * * * * *
11394884 GGGGGATCAGGCC-GGTCCCCGGCTTGCACA-TACTACCTCTTCGATCGGCTTAGCGCCCACACG
1 GGGGGA-CCGGCCTGATCCCCGGCTTGCGCATTACTGCCTCTCCGATCGGCTTAGCGCCCGCACG
*
11394947 CTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCCTTCCATGTCTAAGC
65 CTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
11394997 ATATGGGGTT
Statistics
Matches: 363, Mismatches: 58, Indels: 44
0.78 0.12 0.09
Matches are distributed among these distances:
157 6 0.02
158 90 0.25
159 123 0.34
160 2 0.01
161 1 0.00
162 5 0.01
164 3 0.01
165 1 0.00
166 4 0.01
168 4 0.01
170 3 0.01
171 113 0.31
172 8 0.02
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
GGGGGACCGGCCTGATCCCCGGCTTGCGCATTACTGCCTCTCCGATCGGCTTAGCGCCCGCACGC
TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCGAACCGAACCAAGGG
TTACGGCAGCAGGACCGACAGCACGCAGA
Found at i:11395007 original size:26 final size:26
Alignment explanation
Indices: 11394969--11395021 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
11394959 GTTGGCTTAG
*
11394969 GCATACGGAGTTCCTT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
* *
11394995 GCATATGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11395021 G
1 G
11395022 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11395211 original size:196 final size:196
Alignment explanation
Indices: 11394861--11395219 Score: 479
Period size: 196 Copynumber: 1.8 Consensus size: 196
11394851 AAGGGTTACG
* * * *
11394861 GCAGCAGGACCGATAGCACGTAGGGGGGATCAGGCCGGTCCCCGGCTTGCACATACTACCTCTTC
1 GCAGCAGGACCGACAGCACGTAGGGGGGATCAGGCCGATCCCCAGCTTGCACATACTACCTATTC
* * * * * *
11394926 GATCGGCTTAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCCTTCCATGT
66 GACCGGCTAAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGT
* *
11394991 CTAAGCATATGGGGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGTAGGACC
131 CTAAGAATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGTAGGACC
11395056 A
196 A
* * * *** *
11395057 GCAGCAGGATCGGCAGCACGTAGGGGGGATCGGGCCGATCCCCAGCTTGTGGATTCTACCTA-TC
1 GCAGCAGGACCGACAGCACGTAGGGGGGATCAGGCCGATCCCCAGCTTGCACATACTACCTATTC
* * *
11395121 TGGCCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-
66 -GACCGGCTAAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCAT
*
11395185 GTCTAAGAATATGGAGTTCTTTCCCAGTCTAAGAT
129 GTCTAAGAATATGGAGTTCATTCCCAGTCTAAGAT
11395220 TGAACTAGAT
Statistics
Matches: 138, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
195 2 0.01
196 133 0.96
197 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (196 bp):
GCAGCAGGACCGACAGCACGTAGGGGGGATCAGGCCGATCCCCAGCTTGCACATACTACCTATTC
GACCGGCTAAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGT
CTAAGAATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGTAGGACC
A
Found at i:11395538 original size:26 final size:26
Alignment explanation
Indices: 11395508--11395560 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11395498 GTTGGCTTAG
11395508 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
11395534 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11395560 G
1 G
11395561 TGTGTCAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11396565 original size:159 final size:159
Alignment explanation
Indices: 11396267--11396760 Score: 479
Period size: 159 Copynumber: 3.1 Consensus size: 159
11396257 GCATATGAAT
* * ** ** * *
11396267 TTCATTCC-TAGTCTAAG-ATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCATGCAG
1 TTCATTCCAT-GTCTAAGCATTAGACCAGACCAAGGGTTATGGCAG-AGGATCGATAGCACGCAG
* * *
11396330 GGGGGACAGGGCCGATCCCCAACTTGCGCATTCTGCCTCT-TCGGCCG-GCTGAGCGCTCACATG
64 GGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCT-GGCCGAGCTGAGCGCTCACACG
* * *
11396393 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAG
128 CTCGTTTCATGGGTTGGCTTAGGCATACGGAG
* * * * *
11396425 TTCATTCCATGTCTAAGCCCTT-G-GCGGACCAAGGGTTATGGCA-ACGAGATCGGTAGCAGGCA
1 TTCATTCCATGTCTAAG-CATTAGACCAGACCAAGGGTTATGGCAGA-G-GATCGATAGCACGCA
* * * * * * *
11396487 GAGGGGGACCGGGCCGATCCTCGGCTTGTGCATTATGGCTCTCTGG-CGAGCTCAGCGCCCACAC
63 G-GGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCCGAGCTGAGCGCTCACAC
* *
11396551 GCTCGTTTCATGGGTTGACTTAGGCATACAGAG
127 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
* * * *
11396584 TTCATTTC-TAGTCTAAG-ATTAGACCAGATCGAGGGTTATGGCAGAGGATCGATAGCACGTAGG
1 TTCATTCCAT-GTCTAAGCATTAGACCAGACCAAGGGTTATGGCAGAGGATCGATAGCACGCAGG
* * * * * * *
11396647 GGGGATCGAGCCGATCCCCCGCTTGCGCATTCTGCCTTTCCGGCCGA-TTGAGCGCTCGCACGCT
65 GGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCCGAGCTGAGCGCTCACACGCT
*
11396711 CGTTTCATGGGTTGGCTTAGGCATACGAAG
130 CGTTTCATGGGTTGGCTTAGGCATACGGAG
11396741 TTCATTCCATGTCTAAGCAT
1 TTCATTCCATGTCTAAGCAT
11396761 ACGGAGTTCA
Statistics
Matches: 270, Mismatches: 51, Indels: 30
0.77 0.15 0.09
Matches are distributed among these distances:
156 1 0.00
157 92 0.34
158 66 0.24
159 108 0.40
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
TTCATTCCATGTCTAAGCATTAGACCAGACCAAGGGTTATGGCAGAGGATCGATAGCACGCAGGG
GGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCCGAGCTGAGCGCTCACACGCTC
GTTTCATGGGTTGGCTTAGGCATACGGAG
Found at i:11396761 original size:26 final size:26
Alignment explanation
Indices: 11396731--11396783 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11396721 GTTGGCTTAG
11396731 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
*
11396757 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
11396783 G
1 G
11396784 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:11397634 original size:159 final size:158
Alignment explanation
Indices: 11397173--11397634 Score: 395
Period size: 159 Copynumber: 2.9 Consensus size: 158
11397163 GATCGGATTG
* * * * * *
11397173 GACCGAGGGTTAAGGCAGCAGGATCGATAGCACGCAGGGGGT-ACCGGGCCAATCCCC-GACTTA
1 GACCAAGGGTTATGACAGCAGGATCAACAGCACGCAGGGGGTGACCGGGCCGATCCCCAG-CTTA
* * * * * * *
11397236 CGCATTCTGCCTCTCCGGCCGACTAAGCGCCCACACGCCCGTTTCGTTGGTTGGCTT--CATAGG
65 CGCATTCTGCCTTTTCGGTCGGCTAAGCGCCCGCACGCTCGTTTCGTTGGTTGGCTTAGCATACG
11397299 GAGTTCATTCCATGTCTAAACCCCAGCCA
130 GAGTTCATTCCATGTCTAAACCCCAGCCA
* * * * * * ** *
11397328 GACCGAGGGTTATGGCAGCGGGACCAGCAGCACGCAGAGGGG-GATCGAACTGATCCCCTA-CTT
1 GACCAAGGGTTATGACAGCAGGATCAACAGCACGCAG-GGGGTGACCGGGCCGATCCCC-AGCTT
** * * * *
11397391 GTGCATTATGCCTCTTT-GGTCTGCTCAA-CGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCA
64 ACGCATTCTGCCT-TTTCGGTCGGCT-AAGCGCCCGCACGCTCGTTTCGTTGGTTGGCTTA-GCA
* * * * **
11397454 TACGAAATTCATTCCCA-GTCTATGATCGGA-CCA
126 TACGGAGTTCATT-CCATGTCTA-AACCCCAGCCA
* * *
11397487 GACTAAGGGTTGTGATAGCAGGATCAACAGCACGCAGGGGGTGACCGGGCCGATCCCCAGCTTAC
1 GACCAAGGGTTATGACAGCAGGATCAACAGCACGCAGGGGGTGACCGGGCCGATCCCCAGCTTAC
* * * * *
11397552 GCATTCTTCCTTTTCGGTCGGTTGAGCGCCCGCACGCTCATTTCATTGGTTGGCTTAGGCATACG
66 GCATTCTGCCTTTTCGGTCGGCTAAGCGCCCGCACGCTCGTTTCGTTGGTTGGCTTA-GCATACG
11397617 GAGTTCATTCCATGTCTA
130 GAGTTCATTCCATGTCTA
11397635 CGCATACGGA
Statistics
Matches: 235, Mismatches: 56, Indels: 28
0.74 0.18 0.09
Matches are distributed among these distances:
155 31 0.13
156 58 0.25
157 3 0.01
158 12 0.05
159 125 0.53
160 6 0.03
ACGTcount: A:0.20, C:0.29, G:0.27, T:0.24
Consensus pattern (158 bp):
GACCAAGGGTTATGACAGCAGGATCAACAGCACGCAGGGGGTGACCGGGCCGATCCCCAGCTTAC
GCATTCTGCCTTTTCGGTCGGCTAAGCGCCCGCACGCTCGTTTCGTTGGTTGGCTTAGCATACGG
AGTTCATTCCATGTCTAAACCCCAGCCA
Found at i:11397641 original size:26 final size:26
Alignment explanation
Indices: 11397610--11397660 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11397600 GTTGGCTTAG
11397610 GCATACGGAGTTCATTC-CATGTCTAC
1 GCATACGGAGTTCATTCTCA-GTCTAC
11397636 GCATACGGAGTTCATTCTCAGTCTA
1 GCATACGGAGTTCATTCTCAGTCTA
11397661 AGATTTTGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAC
Found at i:11403143 original size:26 final size:26
Alignment explanation
Indices: 11403113--11403165 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11403103 GTTGACTTAC
11403113 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
11403139 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11403165 G
1 G
11403166 ATCGGATCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11403642 original size:26 final size:26
Alignment explanation
Indices: 11403612--11403664 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11403602 GTTGGCTTAG
*
11403612 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
11403638 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
11403664 G
1 G
11403665 ACCAGCAGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:11403756 original size:165 final size:165
Alignment explanation
Indices: 11403506--11403826 Score: 466
Period size: 165 Copynumber: 1.9 Consensus size: 165
11403496 GGGTTGCGTT
* * * * * *
11403506 AGCAGGTTCGACAGCACGTAGGGGGGACTGGGTTAGTACTCAGCTTACGCATTCTGCCTCTCCAG
1 AGCAGGATCGACAGCACGCAGGGGGGACCGGGTGAGTACCCAGCTTACACATTCTGCCTCTCCAG
* ** * *
11403571 CTGGTTGAGCGCCTGCACGCTCGATTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
66 CCGACTGAGCGCCCGCACGCTCGATTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCT
11403636 AAGCATAAGGAGTTCATTCCCAGTCTAAGACCAGC
131 AAGCATAAGGAGTTCATTCCCAGTCTAAGACCAGC
*
11403671 AGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGA-T-CCCCGACTTACACATTCTGCCTCTCC
1 AGCAGGATCGACAGCACGCAGGGGGGACCGGGT-GAGTACCCAG-CTTACACATTCTGCCTCTCC
* *
11403734 AGCCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGT
64 AGCCGACTGAGCGCCCGCACGCTCGATTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGT
* *
11403799 CTAAGCATATGGATTTCATTCCCAGTCT
129 CTAAGCATAAGGAGTTCATTCCCAGTCT
11403827 GAGATCGGAT
Statistics
Matches: 138, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
164 3 0.02
165 134 0.97
166 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (165 bp):
AGCAGGATCGACAGCACGCAGGGGGGACCGGGTGAGTACCCAGCTTACACATTCTGCCTCTCCAG
CCGACTGAGCGCCCGCACGCTCGATTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGCATAAGGAGTTCATTCCCAGTCTAAGACCAGC
Found at i:11404711 original size:26 final size:26
Alignment explanation
Indices: 11404655--11404718 Score: 62
Period size: 26 Copynumber: 2.5 Consensus size: 26
11404645 GATGGTTGGC
* * *
11404655 TTAAGCGTACGGAGTTCATTCCATGT
1 TTAAGCATTCGGATTTCATTCCATGT
*
11404681 CTAAGCATTCGGATTTCATTCC-TAGT
1 TTAAGCATTCGGATTTCATTCCAT-GT
11404707 TTAAG-ATT-GGAT
1 TTAAGCATTCGGAT
11404719 GGGACTGATG
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
24 4 0.12
25 4 0.12
26 24 0.75
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (26 bp):
TTAAGCATTCGGATTTCATTCCATGT
Found at i:11405047 original size:26 final size:26
Alignment explanation
Indices: 11405011--11405063 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11405001 GTTGGCTTAG
11405011 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
11405037 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11405063 G
1 G
11405064 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11405395 original size:26 final size:26
Alignment explanation
Indices: 11405365--11405415 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11405355 TGACTTAGGC
11405365 ATACGGAGTTCATCCCCAGTATAAGT
1 ATACGGAGTTCATCCCCAGTATAAGT
* *
11405391 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTATAAG
11405416 ATTGGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTATAAGT
Found at i:11411202 original size:26 final size:26
Alignment explanation
Indices: 11411152--11411204 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11411142 GTTGGCTTAT
*
11411152 GCATACAAAGTTCATTCCATGTCTAA
1 GCATACAAAGTTCATTCCATATCTAA
*
11411178 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAAAGTTCATT-CCATATCTAA
11411204 G
1 G
11411205 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCATATCTAA
Found at i:11413039 original size:159 final size:156
Alignment explanation
Indices: 11412594--11413319 Score: 545
Period size: 159 Copynumber: 4.5 Consensus size: 156
11412584 ATCCCCAATC
* * * **
11412594 TAAGCATGCAGAGTTCATTCCTAGTGTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCG
1 TAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCG
* * * *
11412659 ACAGCACGTA-GGGGGACCGGGCTGATCCTCGGTTTACGCATTCTACCTCTCC-AGCCGGCTGAG
66 ACAGCA-GCAGGGGGGACCGGGC-GATCCCCGGCTTGCGCATTCTACCTCTCCGA-CCGGCTGAG
* * *
11412722 CACCCGCACGCCCGTTTCATGGGTTGGC-
128 CGCCCGCACGCTCGTTTCATGGGTTGACT
* * * ** * *
11412750 TAA-CATAAGGAGTTCATTAC-ATGTCCAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCGGGAT
1 TAAGCATACGGAGTTCATTCCTA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGAT
* * * * * ** *
11412812 CGACAGGAGCAGAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTCA
64 CGACAGCAGCAG-GGGGGACC-GGGCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGA
* *
11412877 GCGCCCGCAGGCTCATTTCATGGGTTGACT
127 GCGCCCGCACGCTCGTTTCATGGGTTGACT
* *
11412907 TAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGTGGTAGCAGGATCG
1 TAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCG
* * * * *
11412972 AAAACATGCAGGGGTGGACCGGGTCGGTCCCCGGCTTGCGCATTCTACCTCTCCGACCAGTTGAG
66 ACAGCA-GCAGGGG-GGACCGGG-CGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAG
* *
11413037 CGCCCGCACGCTTGTTTCATGGGTTGTCT
128 CGCCCGCACGCTCGTTTCATGGGTTGACT
11413066 T-AGCCATACGGAGTTCATTCCGTAGTTCATTCCCAGTCTAAGATCTA-ACCGGACCGAGGGTTG
1 TAAG-CATACGGAGTTCATT-C------C--T---AGTCTAAGATC-AGACCGGACCGAGGG-T-
* * *
11413129 CAGTAGTAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGAGACCGGGCCATCCCTGGCTTGCA
50 ---T-GT--G----GCAGCAGGATCGACAGCA-GCAGGGGG-GACCGGGCGATCCCCGGCTTGCG
* * * **
11413194 CATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATTGGTTGGTT
103 CATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
* * * ** * *
11413248 TAGGCAGACGGAGTTCATTCC-ATGTCTATGCCCA-AGCCGGATCGAGGGTTGTGGCAGCAGGAC
1 TAAGCATACGGAGTTCATTCCTA-GTCTAAGATCAGA-CCGGACCGAGGGTTGTGGCAGCAGGAT
11413311 CGACAGCAG
64 CGACAGCAG
11413320 GATCGACAGC
Statistics
Matches: 448, Mismatches: 79, Indels: 85
0.73 0.13 0.14
Matches are distributed among these distances:
154 3 0.01
155 48 0.11
156 67 0.15
157 10 0.02
158 73 0.16
159 83 0.19
160 1 0.00
162 1 0.00
164 2 0.00
165 1 0.00
166 1 0.00
168 1 0.00
169 4 0.01
170 18 0.04
171 23 0.05
172 2 0.00
175 1 0.00
176 1 0.00
177 2 0.00
179 1 0.00
181 1 0.00
182 74 0.17
183 30 0.07
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.21
Consensus pattern (156 bp):
TAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCG
ACAGCAGCAGGGGGGACCGGGCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGC
CCGCACGCTCGTTTCATGGGTTGACT
Found at i:11413757 original size:159 final size:159
Alignment explanation
Indices: 11413587--11413952 Score: 371
Period size: 158 Copynumber: 2.3 Consensus size: 159
11413577 CCTGCATACC
** *
11413587 CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGA
1 CATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGA
* * ** * * * *
11413651 GTTGTGGTAGTGGGACCGGTAGCACGCCGAAGGGGA-CAGGGTCGATCCCCGGCTTGCGCATTAT
66 GTTGCGATAGCAGGACCGATAGCACACAG-AGGGGATCA-GGCCGATCCCCGGCTTGCGCATTAT
*
11413715 GACTCTCCGGCCGGCTCAGCACCCGAACGCT
129 GACTCTCCGACCGGCTCAGCACCCGAACGCT
* * *** * * *
11413746 CGTTTCGTGGGTCAACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAG
1 CATTTCATGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAG
* * * * * *
11413809 GGTTGCGATAGCAGGATCGATAGCACACAGGGGGGATCAGGCCGGTCCCTGGCTTGCGCATTCTG
65 AGTTGCGATAGCAGGACCGATAGCACACAGAGGGGATCAGGCCGATCCCCGGCTTGCGCATTATG
* * * * * ** *
11413874 CCTCTTCGATCGGTTGAGCACCCTCACGTT
130 ACTCTCCGACCGGCTCAGCACCCGAACGCT
11413904 CATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
1 CATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
11413953 TACGGAGTTC
Statistics
Matches: 163, Mismatches: 39, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.02
158 89 0.55
159 68 0.42
160 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
CATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGA
GTTGCGATAGCAGGACCGATAGCACACAGAGGGGATCAGGCCGATCCCCGGCTTGCGCATTATGA
CTCTCCGACCGGCTCAGCACCCGAACGCT
Found at i:11413974 original size:26 final size:26
Alignment explanation
Indices: 11413924--11413976 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11413914 GTTGGCTTAG
*
11413924 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
11413950 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
11413976 G
1 G
11413977 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:11414101 original size:184 final size:184
Alignment explanation
Indices: 11413766--11414161 Score: 521
Period size: 184 Copynumber: 2.2 Consensus size: 184
11413756 GTCAACTTAG
* * * * *
11413766 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGATAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGATAGACA
* *** * *
11413831 GCACACAGGGGGGATCAGGCCGGTCCCTGGCTTGCGCATTCTGCCTCTTCGATCGGTTGAGCACC
66 GCACACAGGGGGGATCAGGCCGATCCCCAACTTGCGCATTCTGCCTCTTCGATCAGCTGAGCACC
* * *
11413896 CTCACGTTCATTTCATGGGTTGGCTTAGGCATACAG-AGTTCATTCCATGTCTAA
131 CGCACGCTCATTTCATGGGTTGGATTAGGCATA-AGAAGTTCATTCCATGTCTAA
* **
11413950 GCATACGGAGTTCATTCCCAATCTAAGATTGGACCAGATCGAGGGTATTG-G-CAGCAGGATAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGG--TTGCGACAGCAGGATAGA
* * *
11414013 CAGCACGCAGGGGGGATCGGGCCGATCCCCAACTTGCGCATTCTGCCTC-TCAGGTCAGCTGAGC
64 CAGCACACAGGGGGGATCAGGCCGATCCCCAACTTGCGCATTCTGCCTCTTC-GATCAGCTGAGC
* * *
11414077 ACCCGCACGCTCGTTTCGTGGGTTGGATTAGGCATATGAAGTTCATTCCATGTCTAA
128 ACCCGCACGCTCATTTCATGGGTTGGATTAGGCATAAGAAGTTCATTCCATGTCTAA
11414134 GCATACGGAGTTCATTCCCAGTCTAAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGA
11414162 GTTTGAGCCA
Statistics
Matches: 184, Mismatches: 24, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
183 3 0.02
184 177 0.96
185 1 0.01
186 3 0.02
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGATAGACA
GCACACAGGGGGGATCAGGCCGATCCCCAACTTGCGCATTCTGCCTCTTCGATCAGCTGAGCACC
CGCACGCTCATTTCATGGGTTGGATTAGGCATAAGAAGTTCATTCCATGTCTAA
Found at i:11414610 original size:159 final size:158
Alignment explanation
Indices: 11414330--11414633 Score: 410
Period size: 159 Copynumber: 1.9 Consensus size: 158
11414320 CAGATTGGAC
* * *
11414330 CGAGGGTTGTGGTAGCAGGATCAGCAGCACGCAAGGGGGATCGGGCCGATCCCCGACTTACGCAT
1 CGAGGGTTGTGGTAGCAGGACCAACAGCACGCAAGAGGGATCGGGCCGATCCCCGACTTACGCAT
* * * * *
11414395 TCTTCCTCTCCGACCGGCTGGGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
66 TCTACCTCTCCGACCGGCTGAGCGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCATACGGAGT
11414460 TCATTCCATGTCTAATCCCCAGTCGGAT
131 TCATTCCATGTCTAATCCCCAGTCGGAT
** * * * * *
11414488 CGAGGGTTGTGGTAGTGGGACCAACAGCACGCAGAGAGGGATTGGGTCGATCCTCGGCTTGCGCA
1 CGAGGGTTGTGGTAGCAGGACCAACAGCACGCA-AGAGGGATCGGGCCGATCCCCGACTTACGCA
* * * * * *
11414553 TTCTACCTCTCTGGCCGGTTGAGCGCTCGTACACTCATTTCGTGGGTTGGCTTAGGCATACGGAG
65 TTCTACCTCTCCGACCGGCTGAGCGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCATACGGAG
11414618 TTCATTCCATGTCTAA
130 TTCATTCCATGTCTAA
11414634 GCATATGGAG
Statistics
Matches: 124, Mismatches: 21, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
158 29 0.23
159 95 0.77
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.24
Consensus pattern (158 bp):
CGAGGGTTGTGGTAGCAGGACCAACAGCACGCAAGAGGGATCGGGCCGATCCCCGACTTACGCAT
TCTACCTCTCCGACCGGCTGAGCGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAATCCCCAGTCGGAT
Found at i:11414644 original size:26 final size:26
Alignment explanation
Indices: 11414608--11414660 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11414598 GTTGGCTTAG
11414608 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
11414634 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
11414660 G
1 G
11414661 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:11415390 original size:26 final size:26
Alignment explanation
Indices: 11415338--11415392 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
11415328 GGGTTGGCTG
*
11415338 AAGCATAAAGAGTTCATTCCATCTCT
1 AAGCATAAAGAGTTCATTCCATATCT
**
11415364 AAGCATACGGAGTTCATTCCCA-ATCT
1 AAGCATAAAGAGTTCATT-CCATATCT
11415390 AAG
1 AAG
11415393 ATCAGACAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.27
Consensus pattern (26 bp):
AAGCATAAAGAGTTCATTCCATATCT
Found at i:11415573 original size:26 final size:26
Alignment explanation
Indices: 11415537--11415589 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11415527 GTTGGCTTAG
*
11415537 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
11415563 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11415589 G
1 G
11415590 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11416065 original size:26 final size:26
Alignment explanation
Indices: 11416036--11416088 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11416026 GTTAGCTTAG
11416036 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
11416062 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11416088 G
1 G
11416089 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11416173 original size:11 final size:11
Alignment explanation
Indices: 11416157--11416182 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
11416147 CCCGGGGCAC
11416157 CATCATCGGAG
1 CATCATCGGAG
11416168 CATCATCGGAG
1 CATCATCGGAG
11416179 CATC
1 CATC
11416183 GCGGAGAGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.19
Consensus pattern (11 bp):
CATCATCGGAG
Found at i:11416993 original size:26 final size:26
Alignment explanation
Indices: 11416957--11417009 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11416947 GTTGGCTTAG
11416957 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
11416983 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11417009 G
1 G
11417010 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11417507 original size:26 final size:26
Alignment explanation
Indices: 11417456--11417508 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11417446 GTTGGCTTAG
* *
11417456 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGACTAA
11417482 GCATACAGAGTTCATTCCCA-GACTAA
1 GCATACAGAGTTCATT-CCATGACTAA
11417508 G
1 G
11417509 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGACTAA
Found at i:11418697 original size:26 final size:26
Alignment explanation
Indices: 11418661--11418713 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11418651 GTTGGTTTAG
*
11418661 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
11418687 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
11418713 G
1 G
11418714 ATTGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:11419059 original size:26 final size:26
Alignment explanation
Indices: 11419030--11419108 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 26
11419020 GTTGACTTAG
* * *
11419030 GCATACGAAGTTTATCCCTTATCTAA
1 GCATACGGAGTTCATCCCATATCTAA
* *
11419056 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATCCCATATCTAA
11419082 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCA-TCCCATATCTAA
11419108 G
1 G
11419109 ATTTTGGGCC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
26 41 0.91
27 4 0.09
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATATCTAA
Found at i:11419821 original size:26 final size:26
Alignment explanation
Indices: 11419791--11419843 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11419781 GTTGACTTAG
*
11419791 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
11419817 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
11419843 G
1 G
11419844 ATCGAACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:11420329 original size:26 final size:26
Alignment explanation
Indices: 11420293--11420371 Score: 142
Period size: 26 Copynumber: 3.0 Consensus size: 26
11420283 GTTGGCTTAG
11420293 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
11420319 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
11420345 GCATACGGAGTTCATTCC-TAGTCTAA
1 GCATACGGAGTTCATTCCAT-GTCTAA
11420371 G
1 G
11420372 ATTTTGAGCC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
25 1 0.02
26 51 0.98
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:11421564 original size:158 final size:157
Alignment explanation
Indices: 11421017--11421585 Score: 474
Period size: 158 Copynumber: 3.6 Consensus size: 157
11421007 AATGGCATTG
* * * * * * * * *
11421017 ATCCTCGGCTTGCGCATCCTGCCTCTCTGGTC-GGCTGAGCGCTCGTACGCTCGTTTCGTGGGTT
1 ATCCCCGGCTTGCGCATTCTGCCTCT-TCGACTGGCTAAGCGCCCGCACGCTCATTTCATGGGTT
** * * *
11421081 GACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGATTGGACCGATGGTTG-CAGTAGCA
65 GACTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCGGA-CCGAACGAGGGTTGTGA-TAGCA
* * **
11421144 GGATCGACAGCACGCAGGGGGGATTGGGCCA
127 GGATCGATAGCACGCAGAGGGGACCGGGCCA
* * * * * *
11421175 ATCCCTGGCTTGCGCATTCTGCCTC-TCTGGCCGGCTGAGCGCCCACACGCCCATTTCAT-GG--
1 ATCCCCGGCTTGCGCATTCTGCCTCTTC-GACTGGCTAAGCGCCCGCACGCTCATTTCATGGGTT
* ** * * * * * **
11421236 G-CTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGTGTTGTGGCAGC-GA
65 GACTTAGGCATACGGAGTTCATTCCATGTCTAAG-ATCGGACCGAACGAGGGTTGTGATAGCAG-
* *
11421299 GATCGGTAGCACGCAGAGGGGGACCGGGCCG
128 GATCGATAGCACGCAGA-GGGGACCGGGCCA
* * * * * * * * *
11421330 ATCCCCGGCTTACACATTATGCCTCTCCGACTGGCTCAGCACCTGCACGCTCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTTCGACTGGCTAAGCGCCCGCACGCTCATTTCATGGGTTG
* *
11421395 ACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATTGGACCAAACTGAGGGTTGTGATAGCAGG
66 ACTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGAAC-GAGGGTTGTGATAGCAGG
** *
11421459 ATCGATAGCACAAAGAGGGGACCAGGCCA
129 ATCGATAGCACGCAGAGGGGACCGGGCCA
* * *
11421488 ATCCCCGCCTTGCGCATTCTACCTCTTCGACTGACTAAGCGCCCGCACGCTCATTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTTCGACTGGCTAAGCGCCCGCACGCTCATTTCATGGGTTG
* * *
11421553 GCTTAGGCATACGAAGATCATTCCATGTCTAAG
66 ACTTAGGCATACGGAGTTCATTCCATGTCTAAG
11421586 CATACGGAGT
Statistics
Matches: 320, Mismatches: 75, Indels: 32
0.75 0.18 0.07
Matches are distributed among these distances:
153 4 0.01
154 54 0.17
155 56 0.17
156 4 0.01
157 7 0.02
158 138 0.43
159 53 0.17
160 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (157 bp):
ATCCCCGGCTTGCGCATTCTGCCTCTTCGACTGGCTAAGCGCCCGCACGCTCATTTCATGGGTTG
ACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCGGACCGAACGAGGGTTGTGATAGCAGGAT
CGATAGCACGCAGAGGGGACCGGGCCA
Found at i:11421957 original size:26 final size:26
Alignment explanation
Indices: 11421928--11421980 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11421918 GTTGACTTAG
11421928 GCATACGGAGTTC-TTCCCCAGTCTAA
1 GCATACGGAGTTCATT-CCCAGTCTAA
*
11421954 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11421980 G
1 G
11421981 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11422293 original size:26 final size:26
Alignment explanation
Indices: 11422257--11422309 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11422247 GTTGGCATAG
*
11422257 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
11422283 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11422309 G
1 G
11422310 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11423605 original size:158 final size:158
Alignment explanation
Indices: 11423142--11423608 Score: 414
Period size: 158 Copynumber: 2.9 Consensus size: 158
11423132 CGCACGCCTG
* *
11423142 TTTCATTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
* * * * * * *
11423207 GTGGTAGCGGGACCGACAGCA-CATAGAGAGGGATCGGGCCGATCCTCGACTTGCTCATTATGCC
66 GTGGCAGCGAGACTGACAGCATGA-AGAGGGGGACCGGGCCGATCCCCGACTTGCTCATTATGCC
** * *
11423271 TCTCCGATCGGCTCAGTGCCCGCACGCTCA
130 TCTCCG-TCGGCTCAGCACCCGCACACCCA
* * * ** *
11423301 TTTCATGGGTTGACTTAGGCATA-CGAGGTTCATTCC-TAGTCTTAG-ATCAGACCAAACCGAGG
1 TTTCATGGGTTGGCTTAGGCATAGGGA-GTTCATTCCAT-GTCTAAGCCCCAG-CCAGACCGAGG
* * * * * * * *
11423363 GTTGCGACAGC-AGGA-TCGACAGCATGCAG-GGGGGACTGGGCTGATCCCTGGA-TTACGCATT
63 GTTGTGGCAGCGA-GACT-GACAGCATGAAGAGGGGGACCGGGCCGATCCC-CGACTTGCTCATT
* * ** * *
11423424 CTACCTCTTTGGCTGGCTGAGCACCCGCACACCCA
125 ATGCCTCTCCGTC-GGCTCAGCACCCGCACACCCA
* *
11423459 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC-GACC-ACGGAT
1 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGA-GGGT
* * *
11423522 TGTGGCAGCGAGACTGACGGCATGAAGAGGGGGACCGGGCCAATCCCCAACTTGCTCATTATGCC
65 TGTGGCAGCGAGACTGACAGCATGAAGAGGGGGACCGGGCCGATCCCCGACTTGCTCATTATGCC
*
11423587 TCTCCAGTCGGTTCAGCACCCG
130 TCTCC-GTCGGCTCAGCACCCG
11423609 TACGCTTGTT
Statistics
Matches: 232, Mismatches: 59, Indels: 35
0.71 0.18 0.11
Matches are distributed among these distances:
156 1 0.00
157 27 0.12
158 130 0.56
159 74 0.32
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
GTGGCAGCGAGACTGACAGCATGAAGAGGGGGACCGGGCCGATCCCCGACTTGCTCATTATGCCT
CTCCGTCGGCTCAGCACCCGCACACCCA
Found at i:11424037 original size:26 final size:26
Alignment explanation
Indices: 11423986--11424037 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
11423976 GTTGACTTAG
* *
11423986 GCATACAGAGTTCATCCCCAGCCTAA
1 GCATACAGAGTTCATACCCAACCTAA
* *
11424012 GCATACGGAGTTCATACCCAATCTAA
1 GCATACAGAGTTCATACCCAACCTAA
11424038 AATCAGACCG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.31, G:0.15, T:0.21
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAACCTAA
Found at i:11424539 original size:159 final size:161
Alignment explanation
Indices: 11424086--11424541 Score: 460
Period size: 159 Copynumber: 2.9 Consensus size: 161
11424076 GCACATAAGA
* * * * * *
11424086 GGACCGGACCGATCCCCGGCTTACGCATTCTGCCTCTTCGGTCGACTAAGCGTCCGCACG-TCCA
1 GGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGGTCGGCAAAGCGCCCGCACGCT-CG
* * **
11424150 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCAGACCGAGGGTT
65 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTT
* ** * *
11424215 GTGGCAG--CGGCACTGGTAGCACGCAGAGGG
130 GTGGTAGTACGGCACTGACAGAACACAGAGGG
* * * * * * * *
11424245 GGACAGGGTCGATCCCCGGTTTATGCATTATGCCTCTTCGATCGGCATAGCACCCGCACGCTAGT
1 GGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGGTCGGCAAAGCGCCCGCACGCTCGT
* * * * ** *
11424310 TTCTTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTCAG-ATCAGACTGAACCGAGGGT
66 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CTGGACCGAGGGT
** *
11424373 TACGGTAGTAC-G-A-TCGACAGAACATAGAGGG
129 TGTGGTAGTACGGCACT-GACAGAACACAGAGGG
* * * * * *
11424404 GGACCGGGCCGATCCCTGCCTTACACATTTTGCCTCTCCGGTCGGCAAATCGCCCGCACGCTCGT
1 GGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGGTCGGCAAAGCGCCCGCACGCTCGT
*
11424469 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCAAGGGTTG
66 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTG
11424534 TGGTAGTA
131 TGGTAGTA
11424542 GGACCAGCAG
Statistics
Matches: 232, Mismatches: 57, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
158 7 0.03
159 216 0.93
160 8 0.03
161 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (161 bp):
GGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGGTCGGCAAAGCGCCCGCACGCTCGT
TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTG
TGGTAGTACGGCACTGACAGAACACAGAGGG
Found at i:11424700 original size:26 final size:26
Alignment explanation
Indices: 11424670--11424722 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11424660 GTTCACTTAG
11424670 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
11424696 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
11424722 G
1 G
11424723 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:11425246 original size:343 final size:342
Alignment explanation
Indices: 11424619--11425410 Score: 1065
Period size: 343 Copynumber: 2.3 Consensus size: 342
11424609 TCTCAGGCCA
* * * * * *
11424619 GCCTCTCCGGTCGGCTGAGCACCCACATGCTCGTTTCATGGGTTCACTTAGGCATACGAAGTTCA
1 GCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGAAGTTCA
*
11424684 TCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGTGTTGCGGTA
66 TCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGTGTTGCGGTA
* * * * * * * * *
11424749 ACAGGATTGGCAGCAAGCAGGGGGGATTGGGCTGATCCCTAGCTTACGCATTCTGCCTCTCTGGC
131 ACAGGATCGACAGCAAGCAAGAGGGATCGGGCCGATCCCCAGCTTACACATTCTGCCTCTCCGGC
* *
11424814 CGGCTGAGTGCCCACACGTTCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTA
196 CAGCTGAGCGCCCACACG-TCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTA
* *
11424879 AGCCCTAGCCGAACCGAAGGTTGTGGCAGCGGGACCAGCAGCACGTAGAA-AGGGATCGGACCGA
260 AACCCCAGCCGAACCGAAGGTTGTGGCAGCGGGACCAGCAGCACGTAGAAGA-GGATCGGACCGA
*
11424943 TCCCTGGT-TTGCACATTAT
324 TCCC-CGTCTTGCACATTAT
* *
11424962 GCCTCTCCAATCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGAAGTTCA
1 GCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGAAGTTCA
* *
11425027 TCCCCAATCTAAGCATACGGAGTTCATTCCCAGACTAAGATCAAATCGGATCGAGTGTTGCGGTA
66 TCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGTGTTGCGGTA
* *
11425092 GCAGGATCGACAGCACA-CAAGAGGGATCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGG
131 ACAGGATCGACAGCA-AGCAAGAGGGATCGGGCCGATCCCCAGCTTACACATTCTGCCTCTCCGG
* * *
11425156 TCAGCTGAGCGCCCACACG-CCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
195 CCAGCTGAGCGCCCACACGTCAT-TTT-GTGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTC
* * * * * * *
11425220 TAAACCCCAGCCAGAA-TGAGGGTTGTGGCAGTGGGACCGGCAGCATGTAGAGGAGGATCGGGCC
258 TAAACCCCAGCC-GAACCGAAGGTTGTGGCAGCGGGACCAGCAGCACGTAGAAGAGGATCGGACC
11425284 GATCCCCGTCTTGCACATTAT
322 GATCCCCGTCTTGCACATTAT
* * * * * *
11425305 GCCTCTCCGACCGACTGAACGCCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATATGAAGTTCA
1 GCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGAAGTTCA
* *
11425370 T-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
66 TCCCCA-ATCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
11425411 TTTGAGCCAC
Statistics
Matches: 394, Mismatches: 48, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
341 2 0.01
342 8 0.02
343 379 0.96
344 5 0.01
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (342 bp):
GCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGAAGTTCA
TCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGTGTTGCGGTA
ACAGGATCGACAGCAAGCAAGAGGGATCGGGCCGATCCCCAGCTTACACATTCTGCCTCTCCGGC
CAGCTGAGCGCCCACACGTCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCAGTCCATGTCTAA
ACCCCAGCCGAACCGAAGGTTGTGGCAGCGGGACCAGCAGCACGTAGAAGAGGATCGGACCGATC
CCCGTCTTGCACATTAT
Found at i:11426449 original size:159 final size:158
Alignment explanation
Indices: 11426027--11426582 Score: 367
Period size: 159 Copynumber: 3.5 Consensus size: 158
11426017 TTGCACAACC
* * * * * * * *
11426027 TGCCTCTCTGGTCGACTGAGCACCCGCACGCTCGTTCCGTGGGTT-GACTAAGGCATACGGAGTT
1 TGCCTCTCCGGTCGACTCAGCGCTCGCACGCTCATTTCGTGGGTTAG-TTTAGGCATACGGAGTT
* * * * * ** * * * * *
11426091 CATCCCCA-GTTTAAGAT-TGAACTAGACCAAGGGTTGCGGCAGTAGGATCGATAGCAC-ACAGG
65 CAT-TCCATGTCTAAGATCAGATC-GGACTGAGGGTTACGGTAGCAGGATCGACAACACGA-AGG
* * * * *
11426153 GGAGACCGGGTCGATCCCCGGCTTGCGCATTA
127 GGGGACCGGGCCGATCCCCGACTTACACATTA
* * * * * * * * * * * * * *
11426185 TACCTCTCTGGTTGGCTGAGTGCCCGCACGCCCGTTTTGTGTGTTGGCTTAGGCATAGGGAGTTC
1 TGCCTCTCCGGTCGACTCAGCGCTCGCACGCTCATTTCGTGGGTTAGTTTAGGCATACGGAGTTC
** ** * ** * **
11426250 ATTAAATGTCTAAGCCCTA-ATCGGA-TCGAGGGATGTGGTAGCGGGATCGGTAACAC-ACAGAG
66 ATTCCATGTCTAAGATC-AGATCGGACT-GAGGGTTACGGTAGCAGGATCGACAACACGA-AG-G
*
11426312 GGGGACCGGGCCGATCCCCGACTTACGCATTA
127 GGGGACCGGGCCGATCCCCGACTTACACATTA
* * *
11426344 TGCCTCTTCGGTCGACTCATCGC-CTGCACTCTCATTTCGTGGGTT-GATTTAGGCATACGGAGT
1 TGCCTCTCCGGTCGACTCAGCGCTC-GCACGCTCATTTCGTGGGTTAG-TTTAGGCATACGGAGT
* *
11426407 TCATTCC-TAGTCTAAGATCAGATCGGACTGAGGGTTACGGTAGTAGGATCGACAGCACGTAAGG
64 TCATTCCAT-GTCTAAGATCAGATCGGACTGAGGGTTACGGTAGCAGGATCGACAACACG-AAGG
* * * * * *
11426471 GGGGATCGGGCTGATCCTCGGCTTGCACATTT
127 GGGGACCGGGCCGATCCCCGACTTACACATTA
* *
11426503 TGCCTCTCCGGTCGGCTGAGCGCTCGCACGCTCATTTCGTGGGTTAGTTTAGGCATACGGAGTTC
1 TGCCTCTCCGGTCGACTCAGCGCTCGCACGCTCATTTCGTGGGTTAGTTTAGGCATACGGAGTTC
11426568 ATTCCATGTCTAAGA
66 ATTCCATGTCTAAGA
11426583 ATGCAGAGTT
Statistics
Matches: 310, Mismatches: 72, Indels: 31
0.75 0.17 0.08
Matches are distributed among these distances:
157 1 0.00
158 91 0.29
159 211 0.68
160 6 0.02
161 1 0.00
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.26
Consensus pattern (158 bp):
TGCCTCTCCGGTCGACTCAGCGCTCGCACGCTCATTTCGTGGGTTAGTTTAGGCATACGGAGTTC
ATTCCATGTCTAAGATCAGATCGGACTGAGGGTTACGGTAGCAGGATCGACAACACGAAGGGGGG
ACCGGGCCGATCCCCGACTTACACATTA
Found at i:11426821 original size:12 final size:12
Alignment explanation
Indices: 11426804--11426831 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
11426794 GGATTGTGGC
11426804 AGCAGGATCGGT
1 AGCAGGATCGGT
11426816 AGCAGGATCGGT
1 AGCAGGATCGGT
11426828 AGCA
1 AGCA
11426832 TATAGAGGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.29, C:0.18, G:0.39, T:0.14
Consensus pattern (12 bp):
AGCAGGATCGGT
Found at i:11426972 original size:26 final size:26
Alignment explanation
Indices: 11426936--11426988 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11426926 GTTGACTTAG
*
11426936 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
11426962 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11426988 G
1 G
11426989 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11427308 original size:26 final size:26
Alignment explanation
Indices: 11427279--11427329 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
11427269 GTTGGCTTAG
*
11427279 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
**
11427305 GCATACAGAGTTCATTTCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
11427330 TGATCGGACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11428451 original size:159 final size:160
Alignment explanation
Indices: 11428185--11428646 Score: 423
Period size: 159 Copynumber: 2.9 Consensus size: 160
11428175 TGGATCGAGG
* ** * * * * * **
11428185 GTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGGA-CCGGGCCGATCCACGACTTGAGCATTCTG
1 GTTGCGGCAGCAGGACCGACAGCACGCAGGGGGCAGCCGGGCTGATCCCCGGCTTGCGCATTCAA
*** * * * *
11428249 CCTCTCCGGCAGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
66 CCTCTCTAACCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
* ***
11428314 TCCATGTCTAAGCCTCAGTTC-GACCGACA
131 TCCATGTCTAAGCATCAAACCAGACCGACA
* * ** * * *
11428343 GTTGTGGTAGTGGGACCGACAGCACGTAGAGGGGGA-CCGGGTTGATCCCCGGCTTGCGCATT-A
1 GTTGCGGCAGCAGGACCGACAGCACGCAG-GGGGCAGCCGGGCTGATCCCCGGCTTGCGCATTCA
* * * * *
11428406 AGCCTCTCTAACCGGCTCAGTGCCCACACGCTCGTTTCATGGGTTGACTTAGGCGTACAGAGTTC
65 A-CCTCTCTAACCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
* **
11428471 ATTCCCA-GTATAAG-ATCAAACCAGACCGAGG
129 ATT-CCATGTCTAAGCATCAAACCAGACCGACA
* * * *
11428502 GTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGCAGTCGGGCTGATCCCCGGCTTGCGCATTCTA
1 GTTGCGGCAGCAGGACCGACAGCACGCAGGGGGCAGCCGGGCTGATCCCCGGCTTGCGCATTCAA
* * * * * * * *
11428567 TCTCTCTGATCGGCTGAGCGCTCGCATGCTCTTTTCATGGGTTGGCTTAGGCATATGGAGTTCAT
66 CCTCTCTAACCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
11428632 TCCATGTCTAAGCAT
131 TCCATGTCTAAGCAT
11428647 ACGGAGTTCA
Statistics
Matches: 237, Mismatches: 59, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
158 33 0.14
159 198 0.84
160 6 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (160 bp):
GTTGCGGCAGCAGGACCGACAGCACGCAGGGGGCAGCCGGGCTGATCCCCGGCTTGCGCATTCAA
CCTCTCTAACCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCATCAAACCAGACCGACA
Found at i:11428647 original size:26 final size:26
Alignment explanation
Indices: 11428617--11428669 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11428607 GTTGGCTTAG
*
11428617 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11428643 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11428669 G
1 G
11428670 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11429254 original size:26 final size:26
Alignment explanation
Indices: 11429218--11429270 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11429208 GTTGACTTAG
11429218 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
11429244 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11429270 G
1 G
11429271 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11429610 original size:26 final size:26
Alignment explanation
Indices: 11429574--11429624 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11429564 TGACTTAGGC
*
11429574 ATACAGAGTTCA-TCCACAGTCTAAGG
1 ATACAAAGTTCATTCC-CAGTCTAAGG
11429600 ATACAAAGTTCATTCCCAGTCTAAG
1 ATACAAAGTTCATTCCCAGTCTAAG
11429625 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (26 bp):
ATACAAAGTTCATTCCCAGTCTAAGG
Found at i:11430167 original size:26 final size:26
Alignment explanation
Indices: 11430138--11430190 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11430128 GTTGACTTAG
11430138 GCATACGAAGTTCA-TCCTCAGTCTAA
1 GCATACGAAGTTCATTCC-CAGTCTAA
* *
11430164 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11430190 G
1 G
11430191 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11430670 original size:26 final size:26
Alignment explanation
Indices: 11430640--11430692 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11430630 GTTGGCTTAG
11430640 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
* *
11430666 GCATATGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11430692 G
1 G
11430693 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11431047 original size:159 final size:158
Alignment explanation
Indices: 11430870--11431169 Score: 370
Period size: 159 Copynumber: 1.9 Consensus size: 158
11430860 AAGCCCCAGT
* * * ** * * * *
11430870 CAGACCAAGGGTTGTGGCAGCGGGATCGGTAGCACGCAGAGGGGGACCGGG-CCGATACTCGGCT
1 CAGACCAAGGATTATGGCAGCAGGATCGACAGCACGCAG-GGGGAAACGGGTCCGATACCCGACT
* * *
11430934 TGCGCATTATGCCTCTTCGGCCGGCTTAGTGCCCGCACGCTCG-TTCCGTAGGTTGACTTAGGCA
65 TGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCC-TA-GTTGACTTAGGCA
11430998 CACGGAGTTCATTCTCAATCTAAGATTGGAC
128 CACGGAGTTCATTCTCAATCTAAGATTGGAC
* * * * * *
11431029 CAGACTAAGGATTATGGCAGCAGGATCGACAGCATGTAGGGGGAAATGGGTTCGATCCCCGACTT
1 CAGACCAAGGATTATGGCAGCAGGATCGACAGCACGCAGGGGGAAACGGGTCCGATACCCGACTT
* * *
11431094 GCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCCTAGTTGGCTTAGGCATAC
66 GCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCCTAGTTGACTTAGGCACAC
11431159 GGAGTTCATTC
131 GGAGTTCATTC
11431170 CATGTCTAAG
Statistics
Matches: 118, Mismatches: 21, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
158 33 0.28
159 81 0.69
160 4 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
CAGACCAAGGATTATGGCAGCAGGATCGACAGCACGCAGGGGGAAACGGGTCCGATACCCGACTT
GCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCCTAGTTGACTTAGGCACAC
GGAGTTCATTCTCAATCTAAGATTGGAC
Found at i:11431068 original size:514 final size:508
Alignment explanation
Indices: 11430101--11431396 Score: 1445
Period size: 514 Copynumber: 2.5 Consensus size: 508
11430091 GGGGGGCCAG
* * * * *
11430101 CTGAGCGCCCGTACGCTCGTTTTATGGGTTGACTTAGGCATACGAAGTTCATCCTCA-GTCTAAG
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAG
* * *
11430165 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGTAGGATCGACAG
65 CATAT-GAGTTCATTCCCAGTCTAAGATCAGACAGAA-CGAGGGTTGCGACAGTAGGACCAACAG
* * ** * * * *
11430230 C---A-CGT---A--A-GGGGGACCGGGCCGATCCTCGACTTACGTATTTTGCCTCTCTGACCGG
128 CAGGATCGTCGCACGAGGGGGGAAC-GGCTGATCCTCGACTTGTGCATTCTACCTCTCCGACCGG
*
11430285 TTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGA
192 TTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
* * * * * * *
11430350 CCCAACCGAACCGATGGTTGTGGCTGCGGGACTGGTAGCACGCAGAGGGGGACCGGATCGATCCC
257 CCCATCAG-ACCAAGGGTTGTGGCAGCGGGACTGGTAGCACGCAGAGGGGGACCGGACCGATACC
* ** * * *
11430415 CGGCTTGCGCAATATGCCTCTCCAGTCGGCTCAGCACTTGCACGCTCTTTTCGTGGGTTGACTTA
321 CGGCTTGCGCAATATGCCTCTCCAGCCGGCTCAGCACCCGCACGCTCGTTCCGTAGGTTGACTTA
** * * * * *
11430480 GGCTTACGAAGTTCATTCCCAGCCTAAGATCGGACCGGACTGAGGGTTACGATAGCAGGATCGAC
386 GGCACACGAAGTTCATTCCCAACCTAAGATCGGACCAGACTAAGGATTACGACAGCAGGATCGAC
* * * **
11430545 AGCATGTAGGTGGG-GATCGGGTT-GATCCCCGACTTGTGCATTCTACCTCTCTGGTTGA
451 AGCATGTAGG-GGGAAAT-GGGTTCGATCCCCGACTTGCGCATTCTACCTCTCCGGCCGA
*
11430603 CTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * *
11430668 ATATGTAGTTCATTCCCAGTCTAAGATCGGACTGGAACGAGGGTTGCGACAGCAGGACCAACAGC
66 ATATG-AGTTCATTCCCAGTCTAAGATCAGAC-AGAACGAGGGTTGCGACAGTAGGACCAACAGC
* * **
11430733 AGGATCGGTCGCACGCAGGGGGGATCAGGCTGATCCTCGGCTTGTGCATTCTACCTCTCCGGTCG
129 AGGATC-GTCGCACG-AGGGGGGAAC-GGCTGATCCTCGACTTGTGCATTCTACCTCTCCGACCG
* * * *
11430798 GCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAG
191 GTTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
*
11430863 CCCCAGTCAGACCAAGGGTTGTGGCAGCGGGA-TCGGTAGCACGCAGAGGGGGACCGGGCCGATA
256 CCCCA-TCAGACCAAGGGTTGTGGCAGCGGGACT-GGTAGCACGCAGAGGGGGACCGGACCGATA
* * * * * **
11430927 CTCGGCTTGCGCATTATGCCTCTTCGGCCGGCTTAGTGCCCGCACGCTCGTTCCGTAGGTTGACT
319 CCCGGCTTGCGCAATATGCCTCTCCAGCCGGCTCAGCACCCGCACGCTCGTTCCGTAGGTTGACT
* * * * * *
11430992 TAGGCACACGGAGTTCATTCTCAATCTAAGATTGGACCAGACTAAGGATTATGGCAGCAGGATCG
384 TAGGCACACGAAGTTCATTCCCAACCTAAGATCGGACCAGACTAAGGATTACGACAGCAGGATCG
* *
11431057 ACAGCATGTAGGGGGAAATGGGTTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGG
449 ACAGCATGTAGGGGGAAATGGGTTCGATCCCCGACTTGCGCATTCTACCTCTCCGGCCGA
* *
11431117 CTGAGCGCCCGCACGCTCGTTTCCT-AGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * * * * ** ** *
11431181 ATACAGAGTTCATTCCTAGTCTAACATTAGACCAGATCGAGGGTTGCGGTAGTAGGACCAGTAGT
66 ATA-TGAGTTCATTCCCAGTCTAAGATCAGA-CAGAACGAGGGTTGCGACAGTAGGACCAACAGC
* * * *
11431246 AGGATCGACAGCACGAAGGGGGGGAACGGGTCGATCCCCGATTTGTGCATTCTACCTC-CCTGAC
129 AGGATCGTC-GCACG-A-GGGGGGAACGGCT-GATCCTCGACTTGTGCATTCTACCTCTCC-GAC
** * * * *
11431310 CGGTTGAGGGCCCGCACGCTCGTTTCATAGATTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
189 CGGTTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
*
11431375 AGCCCCAATCGGACCAAGGGTT
254 AGCCCC-ATCAGACCAAGGGTT
11431397 ATGGTAGCAG
Statistics
Matches: 663, Mismatches: 105, Indels: 40
0.82 0.13 0.05
Matches are distributed among these distances:
501 3 0.00
502 110 0.17
503 3 0.00
505 1 0.00
506 1 0.00
507 2 0.00
510 1 0.00
512 2 0.00
513 113 0.17
514 424 0.64
515 3 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (508 bp):
CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ATATGAGTTCATTCCCAGTCTAAGATCAGACAGAACGAGGGTTGCGACAGTAGGACCAACAGCAG
GATCGTCGCACGAGGGGGGAACGGCTGATCCTCGACTTGTGCATTCTACCTCTCCGACCGGTTGA
GCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
TCAGACCAAGGGTTGTGGCAGCGGGACTGGTAGCACGCAGAGGGGGACCGGACCGATACCCGGCT
TGCGCAATATGCCTCTCCAGCCGGCTCAGCACCCGCACGCTCGTTCCGTAGGTTGACTTAGGCAC
ACGAAGTTCATTCCCAACCTAAGATCGGACCAGACTAAGGATTACGACAGCAGGATCGACAGCAT
GTAGGGGGAAATGGGTTCGATCCCCGACTTGCGCATTCTACCTCTCCGGCCGA
Found at i:11431189 original size:26 final size:26
Alignment explanation
Indices: 11431153--11431204 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11431143 GTTGGCTTAG
*
11431153 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
11431179 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
11431205 CATTAGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:11431572 original size:26 final size:26
Alignment explanation
Indices: 11431534--11431612 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
11431524 GTTGACTTAG
* *
11431534 GCATACAGCGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11431560 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
11431586 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11431612 G
1 G
11431613 ATCAGACCGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11432065 original size:158 final size:157
Alignment explanation
Indices: 11431586--11432086 Score: 481
Period size: 158 Copynumber: 3.2 Consensus size: 157
11431576 CCCAGTCTAA
* * ** * * *
11431586 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACTGAGAGTTACGGTAGTAAGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGA-TGAGGGTTGTGGCAGCAGGATCGAT
* * * * * * *
11431650 AGCATGCAGGGGGGATCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTTCGACCCGATGAGCAC
64 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGCAC
* * *
11431715 CCGCACGCCCGTTTTATGGGTTGGCTTAG
129 CCGCACGCTCATTTTGTGGGTTGGCTTAG
* *** * ** * * *
11431744 GCATAGGGAGTTCATTCCATGTCTAACCCCCTG-CCGGGCCGAGGGTTGTGGCAGCGGGACCGGT
1 GCATACGGAGTTCATTCCATGTCTAA-GATCAGACC-GGATGAGGGTTGTGGCAGCAGGATCGAT
* * * * ** * *
11431808 AGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTGTGCATTATAACTCTCCGACCGGCTCAGCT
64 AGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGCA
* * *
11431873 CCCGGACGCTCATTTTGTGGGTTGACTTAT
128 CCCGCACGCTCATTTTGTGGGTTGGCTTAG
*
11431903 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGATGGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGAT-GAGGGTTGTGGCAGCAGGATCGAT
* * **
11431967 AGCACACAGGGGGGATTGGG-CTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCA
64 AGCACGCAGGGGGGATCGGGTC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGCA
*
11432031 CCCGCATGCTC-TTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCATTTT-GTGGGTTGGCTTAG
*
11432061 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
11432087 ACATACGGAG
Statistics
Matches: 269, Mismatches: 64, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
157 11 0.04
158 134 0.50
159 121 0.45
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGATGAGGGTTGTGGCAGCAGGATCGATAG
CACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGCACCC
GCACGCTCATTTTGTGGGTTGGCTTAG
Found at i:11432809 original size:26 final size:26
Alignment explanation
Indices: 11432773--11432825 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11432763 GTTGACTTAG
11432773 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
11432799 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
11432825 G
1 G
11432826 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:11433303 original size:26 final size:26
Alignment explanation
Indices: 11433267--11433319 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11433257 GTTGGCTTAG
11433267 GCATACAGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
11433293 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
11433319 G
1 G
11433320 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:11433676 original size:26 final size:26
Alignment explanation
Indices: 11433646--11433698 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11433636 GTTGACTTAT
*
11433646 GCATACGGAGTTCGTCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
11433672 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
11433698 G
1 G
11433699 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Done.