Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 70 of 402
Found at i:11434152 original size:26 final size:26
Alignment explanation
Indices: 11434116--11434168 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11434106 GTTGGCTTAG
11434116 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
11434142 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11434168 G
1 G
11434169 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11434522 original size:26 final size:26
Alignment explanation
Indices: 11434492--11434544 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
11434482 TTTGACTTAG
*
11434492 GCATATAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
* *
11434518 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11434544 G
1 G
11434545 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11435836 original size:158 final size:158
Alignment explanation
Indices: 11435587--11435890 Score: 364
Period size: 158 Copynumber: 1.9 Consensus size: 158
11435577 CGGGCTGGAC
* * * *
11435587 CGAGGGTTGTGGCAGCAGGATCTGCAGCACGCAGGGGGGACAGGGCCGATCCCCGGCTTGCGTAT
1 CGAGGGTTGTGGCAACAGGATCGGCAACACGCAGGGGGGACAGGGCCGATCCCCGGCTTGCGCAT
* * * * * * * **
11435652 TCTACCTTTCTGGTCGACTGAGCGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGT
66 TATACCTCTCCGGTCGACTCAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATACAGAGT
11435717 TCATT-CCATGTCTAAGCCCCAGTCGGAT
131 TCATTCCCA-GTCTAAGCCCCAGTCGGAT
* * *
11435745 CGAGGGTTGTGGCAACGGGA-CAGGCAACACGCAGAGGGGGATC-GGGCTGATCCCC-GTTTGCG
1 CGAGGGTTGTGGCAACAGGATC-GGCAACACGCAG-GGGGGA-CAGGGCCGATCCCCGGCTTGCG
* * * *
11435807 CATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAG
63 CATTATACCTCTCCGGTCGACTCAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATACAG
11435872 AGTTCATTCCCAGTCTAAG
128 AGTTCATTCCCAGTCTAAG
11435891 ATCGGATGGG
Statistics
Matches: 122, Mismatches: 20, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
157 1 0.01
158 100 0.82
159 20 0.16
160 1 0.01
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.23
Consensus pattern (158 bp):
CGAGGGTTGTGGCAACAGGATCGGCAACACGCAGGGGGGACAGGGCCGATCCCCGGCTTGCGCAT
TATACCTCTCCGGTCGACTCAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATACAGAGT
TCATTCCCAGTCTAAGCCCCAGTCGGAT
Found at i:11435908 original size:158 final size:156
Alignment explanation
Indices: 11435548--11435911 Score: 344
Period size: 158 Copynumber: 2.3 Consensus size: 156
11435538 CCCAATCTAA
* * * * * *
11435548 GCATACGTAGTTTATTCCTAGTCTAAGATCGGGCTGGACCGAGGGTTGTGGCAGCAGGATCTGCA
1 GCATACG-AGTTCATTCCCAGTCTAAGATC-GGATGGACTGAGGGTTGTGGCAACAGGATCGGCA
* * * * * *
11435613 GCACGCAGGGGGGACAGGGCCGATCCCCGGCTTGCGTATTCTACCTTTCTGGTCGACTGAGCGCC
64 ACACGCAGGGGGGACAGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGGTCGACTCAGCGCC
* * *
11435678 CGCATGCCCGTTTCATGGGTTGGCTTAG
129 CGCACGCCCATTTCATGGGTTGACTTAG
* * ** *
11435706 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCGGA-TCGAGGGTTGTGGCAACGGGA-CA
1 GCATA-CGAGTTCATTCCCA-GTCTAAGATCGGA-T-GGACT-GAGGGTTGTGGCAACAGGATC-
* * * *
11435767 GGCAACACGCAGAGGGGGATC-GGGCTGATCCCC-GTTTGCGCATTATGCCTCTCCGGTCGGCTC
60 GGCAACACGCAG-GGGGGA-CAGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGGTCGACTC
* *
11435830 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
123 AGCGCCCGCACGCCCATTTCATGGGTTGACTTAG
11435864 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATGGGACTGAGGGTTG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGAT-GGACTGAGGGTTG
11435912 CAGTAGCAGG
Statistics
Matches: 163, Mismatches: 31, Indels: 24
0.75 0.14 0.11
Matches are distributed among these distances:
157 5 0.03
158 133 0.82
159 24 0.15
160 1 0.01
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (156 bp):
GCATACGAGTTCATTCCCAGTCTAAGATCGGATGGACTGAGGGTTGTGGCAACAGGATCGGCAAC
ACGCAGGGGGGACAGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGGTCGACTCAGCGCCCG
CACGCCCATTTCATGGGTTGACTTAG
Found at i:11437342 original size:171 final size:170
Alignment explanation
Indices: 11437053--11437397 Score: 428
Period size: 171 Copynumber: 2.0 Consensus size: 170
11437043 GAGTTGTGAT
* * *
11437053 AGCAGGATTGACAGCACGCAGGGGGGATCGAGCCGATCCCTGACTTACGCATTCTGCCTCTCCGG
1 AGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCTGACTTACGCATTCTGCCTCTCCAG
* * * *
11437118 CCTACTGAGTGCCTACACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCCA-GTC
66 CCTACTGAGGGCCCACACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTC
*
11437182 TAAGAT-CGAATCGGACCGAGGGTTGCGACAGCTGGACCAGC
130 TAAG-TCCGAATCGGACCGAGGGTTGCGACAGCAGGACCAGC
* * * * *
11437223 AGCAGGATCGGCATCACGCAGGGGGGGACCGGGTCGATCCTCTG-CTTGCGCATTCTGCCTCTCC
1 AGCAGGATCGACAGCACGCA-GGGGGGACCGAGCCGATCC-CTGACTTACGCATTCTGCCTCTCC
* * *
11437287 AG-TTGACTGAGGGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
64 AGCCT-ACTGAGGGCCCACACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * * * *
11437351 TCTAAGTCCTAGTCGGACCGAGGGTTGTGGCAGCAGGACCGGC
128 TCTAAGTCCGAATCGGACCGAGGGTTGCGACAGCAGGACCAGC
11437394 AGCA
1 AGCA
11437398 CGCAGAGGGG
Statistics
Matches: 149, Mismatches: 21, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
170 22 0.15
171 124 0.83
172 3 0.02
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.22
Consensus pattern (170 bp):
AGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCTGACTTACGCATTCTGCCTCTCCAG
CCTACTGAGGGCCCACACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGTCCGAATCGGACCGAGGGTTGCGACAGCAGGACCAGC
Found at i:11437532 original size:26 final size:25
Alignment explanation
Indices: 11437502--11437553 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 25
11437492 GTTGACTTAG
11437502 GCATACAGAGTTCA-TCCTCAGTCTAA
1 GCATAC-GAGTTCATTCC-CAGTCTAA
*
11437528 GCATACTAGTTCATTCCCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
11437553 G
1 G
11437554 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:11437824 original size:26 final size:26
Alignment explanation
Indices: 11437790--11437842 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11437780 GTTGGCTTAG
11437790 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
11437816 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11437842 G
1 G
11437843 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11438294 original size:18 final size:18
Alignment explanation
Indices: 11438261--11438304 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
11438251 GAAAAAATTT
11438261 TAAAAAATCTTGAACT-G
1 TAAAAAATCTTGAACTCG
*
11438278 TAAAAAATTTTGAAACTCG
1 TAAAAAATCTTG-AACTCG
*
11438297 TGAAAAAT
1 TAAAAAAT
11438305 AAAAAACGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 11 0.48
18 4 0.17
19 8 0.35
ACGTcount: A:0.50, C:0.09, G:0.11, T:0.30
Consensus pattern (18 bp):
TAAAAAATCTTGAACTCG
Found at i:11439061 original size:26 final size:26
Alignment explanation
Indices: 11439010--11439062 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11439000 TTTGGCTTAG
**
11439010 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATAACTAA
11439036 GCATACGGAGTTCATTCCCA-AACTAA
1 GCATACGGAGTTCATT-CCATAACTAA
11439062 G
1 G
11439063 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATAACTAA
Found at i:11439425 original size:26 final size:26
Alignment explanation
Indices: 11439387--11439442 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
11439377 TGGGTTGACA
* *
11439387 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATAAGGAGTTCATCCCCAATC
*
11439413 TAAGCATAAGGAGTTCATTCCCAATC
1 TAAGCATAAGGAGTTCATCCCCAATC
11439439 TAAG
1 TAAG
11439443 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATAAGGAGTTCATCCCCAATC
Found at i:11440661 original size:26 final size:26
Alignment explanation
Indices: 11440625--11440675 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11440615 TTGACCCAGA
11440625 CATACGGAGTTCA-TCCCTAGTCTAAT
1 CATACGGAGTTCATTCCC-AGTCTAAT
*
11440651 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
11440676 GATTTGACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAT
Found at i:11441889 original size:25 final size:25
Alignment explanation
Indices: 11441839--11441916 Score: 120
Period size: 26 Copynumber: 3.0 Consensus size: 25
11441829 GTTGACTTAG
*
11441839 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCAT-CCCAGTCTAA
11441865 GCATATGGAGTTCATCCCAGTCTAA
1 GCATATGGAGTTCATCCCAGTCTAA
*
11441890 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCA-TCCCAGTCTAA
11441916 G
1 G
11441917 ATCGGACCGG
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
25 24 0.49
26 25 0.51
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (25 bp):
GCATATGGAGTTCATCCCAGTCTAA
Found at i:11442671 original size:26 final size:26
Alignment explanation
Indices: 11442635--11442687 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11442625 GTTGACTTAG
*
11442635 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
11442661 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
11442687 G
1 G
11442688 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:11443551 original size:26 final size:26
Alignment explanation
Indices: 11443522--11443574 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
11443512 GTTGACTTAG
11443522 GCATAC-AGAGATCA-TCCCTAGTCTAA
1 GCATACGA-AGATCATTCCC-AGTCTAA
*
11443548 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGATCATTCCCAGTCTAA
11443574 G
1 G
11443575 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGATCATTCCCAGTCTAA
Found at i:11444480 original size:26 final size:26
Alignment explanation
Indices: 11444444--11444496 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11444434 GTTGGCTTAG
11444444 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
11444470 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11444496 G
1 G
11444497 ATTTTGAGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11445191 original size:26 final size:26
Alignment explanation
Indices: 11445155--11445207 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11445145 GTTGACTTAG
*
11445155 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
11445181 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11445207 G
1 G
11445208 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11445542 original size:159 final size:158
Alignment explanation
Indices: 11445189--11445579 Score: 389
Period size: 159 Copynumber: 2.5 Consensus size: 158
11445179 AAGCATATGG
* *
11445189 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAA
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAA
* * * * * *
11445254 GGGGGATCAAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGACTGAGTGTCCGCACGCC
66 GGGGGACCAAGCCGATCCCCAGCTTGCGCATTATACCTCTCCAGCCGACTCAGTGTCCGCACGCC
* ***
11445319 TGTTTCATGGGTTGGCTTAGGCATAGGG
131 TGTTTCATGGGTTGACTTAGGCATACAA
** * * * * *
11445347 AGTTCATT-CCATGTCTAAGCCCCA-ACTGGACTGAGGGTTGTGGCAGCTGGA-CTGGCAGCACG
1 AGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC-GACAGCACG
** * *
11445409 CAGAGGGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCAGCC-AGCTCAGTG-CTCG
63 CA-AGGGGGACCAAGCCGATCCCCAGCTTGCGCATTATACCTCTCCAGCCGA-CTCAGTGTC-CG
*
11445472 CACG-CTCGTTTCGTGGGTTGACTTAGGCATACAA
125 CACGCCT-GTTTCATGGGTTGACTTAGGCATACAA
* * * ** * * *
11445506 AGTTTATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAATATCAACAGCATGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAA
11445571 GGGGGACCA
66 GGGGGACCA
11445580 GGTCAGTCCA
Statistics
Matches: 183, Mismatches: 40, Indels: 20
0.75 0.16 0.08
Matches are distributed among these distances:
157 4 0.02
158 61 0.33
159 114 0.62
160 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.21
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAA
GGGGGACCAAGCCGATCCCCAGCTTGCGCATTATACCTCTCCAGCCGACTCAGTGTCCGCACGCC
TGTTTCATGGGTTGACTTAGGCATACAA
Found at i:11446062 original size:26 final size:26
Alignment explanation
Indices: 11446032--11446087 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
11446022 TGGGTTGACT
*
11446032 TAAGCATACGGAGTTCA-TCCCTAGTC
1 TAAGCATACGAAGTTCATTCCC-AGTC
11446058 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
11446084 TAAG
1 TAAG
11446088 ATCGGATCAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 24 0.86
27 4 0.14
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:11446589 original size:158 final size:159
Alignment explanation
Indices: 11446155--11446601 Score: 479
Period size: 158 Copynumber: 2.8 Consensus size: 159
11446145 CGTTCCTCGA
* * * *
11446155 CTTGTGCATTCTGCCTCTCCGATCGACTGAGGGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGC
1 CTTGTGCATTATGCCTCTCCGGTCGACTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGC
* * * * ** *
11446220 ATAGGGAGTTCATTCCATGTCTATGCCCCAGCCAGATCGAGGGTTGTGGCAGTGGGAGT-GAAAG
66 ATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGATCGAGGGTTGTGACAGCAGGA-TCGACAG
*
11446284 CATGCAGTAGGGGACCGGGCCAATCCCCAG
130 CACGCAGTAGGGGACCGGGCCAATCCCCAG
* * * * ** *
11446314 CTTGTGCATTATGCCTCTCCGGTCGGCTCAACGCCCGCATGCCCATTTCGTGGGTTAACTTTGGC
1 CTTGTGCATTATGCCTCTCCGGTCGACTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGC
** * * * ** *
11446379 ATACGGAGTTCATTCCCA-GTCTAAG-ATCGGATCAGACCAAGGGTTGCAACAGCAAGATCGACA
66 ATACGGAGTTCATT-CCATGTCTAAGCCCCAG-TCAGATCGAGGGTTGTGACAGCAGGATCGACA
*
11446442 GCACGCAG-AGGGGACCGGGCCGATCCCCAG
129 GCACGCAGTAGGGGACCGGGCCAATCCCCAG
* * * * * *
11446472 CTTGAGCATTTTGCCTCTTCGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGC
1 CTTGTGCATTATGCCTCTCCGGTCGACTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGC
* * * * * *
11446537 ATATGAAGTTCATTCCGTGTCTAAGCCCCAGTCGGATCGAGGGCTGTGACAGCAGGACCGACAGC
66 ATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGATCGAGGGTTGTGACAGCAGGATCGACAGC
11446602 GGGATCGGCA
Statistics
Matches: 228, Mismatches: 55, Indels: 11
0.78 0.19 0.04
Matches are distributed among these distances:
157 2 0.01
158 121 0.53
159 102 0.45
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
CTTGTGCATTATGCCTCTCCGGTCGACTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGATCGAGGGTTGTGACAGCAGGATCGACAGC
ACGCAGTAGGGGACCGGGCCAATCCCCAG
Found at i:11446747 original size:25 final size:26
Alignment explanation
Indices: 11446719--11446770 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
11446709 GTTGACTTAG
*
11446719 GCATACGGAGTTCA-TCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11446744 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11446770 G
1 G
11446771 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11447030 original size:344 final size:358
Alignment explanation
Indices: 11446377--11447118 Score: 902
Period size: 344 Copynumber: 2.1 Consensus size: 358
11446367 GTTAACTTTG
*
11446377 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCAACAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTACAACAGCAAGATCGACA
* * *
11446442 GCACGCAGAGGGGACCGGGCCGATCCCCAGCTTGAGCATTTTGCCTCTTCGGCCGACTGAGCGCC
66 GCACGCAGAGGGGACCGAGCCGATCCCCAGCTTGAGC----TGCCTATTC-GCCAACTGAGCGCC
* ** * * * *
11446507 CGCACGCTCATTTCATGGGTTGGCTTAGGCATATGAAGTTCATTCCGTGTCTAAGCCCCAGTCGG
126 CGCACGCTCATTTCATGGGTTAGCTTACCCATACGAAGTTCATTCCATCTCTAAGCCCCAGCCGG
* *
11446572 ATCGAGGGCTGTGACAGCAGGACCGACAGCGGGATCGGCAGCACGCAAAGTGGGACCGAGCTGAT
191 ACCAAGGGCTGTGACAGCAGGACCGACAGC--GATCGGCAGCACG---AGTGGGACCGAGCTGAT
* * * * *
11446637 CCCCAGCTTACGCTTTATGCCTCTCCGTCTGACCTCTTCGGTCGACTGAGATCCCGCATGCTCAT
251 CCCCAGCTTACACATTATGCCTCTCCGTCTGACCTCTCCGGTCGACTGAGAGCCCGCACGCTCAT
* * *
11446702 TTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCTGTCTAA
316 TTCATGGGTTGACTTAGGCACACGGAGTTCATCCCCAGTCTAA
* * * * **
11446744 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGACAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTACAACAGCAAGATCGACA
* * *
11446809 GCACGCAGGGGGGACCGAGCTGATCCCCAGCTT-A-C-G-C-ATT-GCCAACTGAGCGTCCGCAC
66 GCACGCAGAGGGGACCGAGCCGATCCCCAGCTTGAGCTGCCTATTCGCCAACTGAGCGCCCGCAC
*
11446868 GCTCGTTTCATGGGTTAGCTTACCCATACGAAGTTCATTCCATCTCTAAGCCCCAGCCGGACCAA
131 GCTCATTTCATGGGTTAGCTTACCCATACGAAGTTCATTCCATCTCTAAGCCCCAGCCGGACCAA
* * * * * * *
11446933 GGGTTGTGGCAGTAGGACCGGCAGC-A-C-GCAG-A-G-G-GGGACCGGGCTGATCCCCGGCTTG
196 GGGCTGTGACAGCAGGACCGACAGCGATCGGCAGCACGAGTGGGACCGAGCTGATCCCCAGCTTA
* *
11446991 CACATTATGCCTCTCCGAT-TGACCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGT
261 CACATTATGCCTCTCCG-TCTGACCTCTCCGGTCGACTGAGAGCCCGCACGCTCATTTCATGGGT
11447055 TGACTTAGGCACACGGAGTTCATCCCCAGTCTAA
325 TGACTTAGGCACACGGAGTTCATCCCCAGTCTAA
* *
11447089 GCATATGGAGTTCATTCCAAGTCTAAGATC
1 GCATACGGAGTTCATTCCCAGTCTAAGATC
11447119 AGACTGGTTC
Statistics
Matches: 331, Mismatches: 42, Indels: 26
0.83 0.11 0.07
Matches are distributed among these distances:
344 97 0.29
345 39 0.12
349 1 0.00
350 1 0.00
351 4 0.01
352 1 0.00
353 1 0.00
356 93 0.28
358 2 0.01
359 1 0.00
360 1 0.00
365 1 0.00
366 1 0.00
367 88 0.27
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (358 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTACAACAGCAAGATCGACA
GCACGCAGAGGGGACCGAGCCGATCCCCAGCTTGAGCTGCCTATTCGCCAACTGAGCGCCCGCAC
GCTCATTTCATGGGTTAGCTTACCCATACGAAGTTCATTCCATCTCTAAGCCCCAGCCGGACCAA
GGGCTGTGACAGCAGGACCGACAGCGATCGGCAGCACGAGTGGGACCGAGCTGATCCCCAGCTTA
CACATTATGCCTCTCCGTCTGACCTCTCCGGTCGACTGAGAGCCCGCACGCTCATTTCATGGGTT
GACTTAGGCACACGGAGTTCATCCCCAGTCTAA
Found at i:11447355 original size:356 final size:344
Alignment explanation
Indices: 11446377--11447360 Score: 804
Period size: 356 Copynumber: 2.8 Consensus size: 344
11446367 GTTAACTTTG
* * * * * * *
11446377 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCAACAGCAAGATC-GAC
1 GCATACGGAGTTCATTCCAAGTCTAAGATCAGATCAGACCGAGGGTTACGACAGCAGGATCAG-T
* * * *
11446441 AGCACGCAGAGGGGACCGGGCCGATCCCCAGCTTGAGCATTTTGCCTCTTCGGCCGACTGAGCGC
65 AGCACACAGAGGGGACCGAGCCGATCCCCAGCTT-A-C-----G-C-ATT--GCCAACTGAGCGC
* * * * ** * * * * *
11446506 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATATGAAGTTCATTCCGTGTCTAAGCCCCAGTCG
119 CCACACGCCCGTTTCATGGGTTAGCTTACCCATACGAAGTTCATTCCATCTCTAAGCCCCAGCCA
* * * * * *
11446571 GATCGAGGGCTGTGACAGCAGGACCGACAGCGGGATCGGCAGCACGCAAAGTGGGACCGAGCTGA
184 GACCAAGGGTTGTGGCAGCAGGACCGACAGC---A----CA-CA-G---AGGGGGACCGGGCTGA
* * * * * * * * *
11446636 TCCCCAGCTTACGCTTTATGCCTCTCCGTCTGACCTCTTCGGTCGACTGAGATCCCGCATGCTCA
237 ACCCCGGATTGCACATTATGCCTCTCCGTCTGACCTCTCCGGTCGACTGAGAGCCCGCACGCTCA
* * *
11446701 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTGTCTAA
302 TTTCATGGGTTGACTTAGGCACACGGAGTTCATCCCAGTCTAA
* * * *
11446744 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGACAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCAAGTCTAAGATCAGATCAGACCGAGGGTTACGACAGCAGGATCAGTA
* * * * * *
11446809 GCACGCAGGGGGGACCGAGCTGATCCCCAGCTTACGCATTGCCAACTGAGCGTCCGCACGCTCGT
66 GCACACAGAGGGGACCGAGCCGATCCCCAGCTTACGCATTGCCAACTGAGCGCCCACACGCCCGT
*
11446874 TTCATGGGTTAGCTTACCCATACGAAGTTCATTCCATCTCTAAGCCCCAGCCGGACCAAGGGTTG
131 TTCATGGGTTAGCTTACCCATACGAAGTTCATTCCATCTCTAAGCCCCAGCCAGACCAAGGGTTG
* * * * *
11446939 TGGCAGTAGGACCGGCAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCACATTATGCCTC
196 TGGCAGCAGGACCGACAGCACACAGAGGGGGACCGGGCTGAACCCCGGATTGCACATTATGCCTC
* *
11447004 TCCGAT-TGACCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCACA
261 TCCG-TCTGACCTCTCCGGTCGACTGAGAGCCCGCACGCTCATTTCATGGGTTGACTTAGGCACA
11447068 CGGAGTTCATCCCCAGTCTAA
325 CGGAGTTCAT-CCCAGTCTAA
* * ** * * *
11447089 GCATATGGAGTTCATTCCAAGTCTAAGATCAGA-CTGGTTCGAGGGTTGCGGCAGCAGGATTAGT
1 GCATACGGAGTTCATTCCAAGTCTAAGATCAGATC-AGACCGAGGGTTACGACAGCAGGATCAGT
* * * * * * *
11447153 TGTACACAGAGGGGACCGGGCCGATCCTCGGCTTGCGTATTCTACCTCTCGGGCCGACTGAGCGC
65 AGCACACAGAGGGGACCGAGCCGATCCCCAGCTTACG----C-A--T-T---GCCAACTGAGCGC
* * ** * * * *
11447218 CCACACGCCCGTTTCGTGGGTTGGCTTAGGCTTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
119 CCACACGCCCGTTTCATGGGTTAGCTTACCCATACGAAGTTCATTCCATCTCTAAGCCCCAGCCA
** * * * * * *
11447283 GACTGAGGGTTGTGGCAGCGGGATCGATAGCACACAGCGGGGGATCGGGCTGAACCTCGGATTGC
184 GACCAAGGGTTGTGGCAGCAGGACCGACAGCACACAGAGGGGGACCGGGCTGAACCCCGGATTGC
*
11447348 TCATTATGCCTCT
249 ACATTATGCCTCT
11447361 TCGACCGGCT
Statistics
Matches: 514, Mismatches: 88, Indels: 41
0.80 0.14 0.06
Matches are distributed among these distances:
344 100 0.19
345 89 0.17
347 1 0.00
348 2 0.00
349 2 0.00
350 1 0.00
352 1 0.00
353 2 0.00
356 222 0.43
358 2 0.00
359 1 0.00
360 1 0.00
365 1 0.00
366 1 0.00
367 87 0.17
368 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (344 bp):
GCATACGGAGTTCATTCCAAGTCTAAGATCAGATCAGACCGAGGGTTACGACAGCAGGATCAGTA
GCACACAGAGGGGACCGAGCCGATCCCCAGCTTACGCATTGCCAACTGAGCGCCCACACGCCCGT
TTCATGGGTTAGCTTACCCATACGAAGTTCATTCCATCTCTAAGCCCCAGCCAGACCAAGGGTTG
TGGCAGCAGGACCGACAGCACACAGAGGGGGACCGGGCTGAACCCCGGATTGCACATTATGCCTC
TCCGTCTGACCTCTCCGGTCGACTGAGAGCCCGCACGCTCATTTCATGGGTTGACTTAGGCACAC
GGAGTTCATCCCAGTCTAA
Found at i:11447590 original size:159 final size:159
Alignment explanation
Indices: 11447163--11447594 Score: 435
Period size: 159 Copynumber: 2.7 Consensus size: 159
11447153 TGTACACAGA
* ** * * * ** *
11447163 GGGGACCGGGCCGATCCTCGGCTTGCGTATTCTACCTCTCGGGCCGACTGAGCGCCCACACGCCC
1 GGGGATCGGGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGACCGACTGAGCGCCTGCACGCTC
* * * *
11447228 GTTTCGTGGGTTGGCTTAGGCTTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGT
66 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAAACTGAGGGT
* * * *
11447293 TGTGGCAGCGGGATCGATAGCACACAGCG
131 TGTGGCAACAGGATCAACAGCACACAGCG
* * * * * * * * * *
11447322 GGGGATCGGGCTGAACCTCGGATTGCTCATTATGCCTCTTCGACCGGCTCAGCGCCTGTACACTC
1 GGGGATCGGGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGACCGACTGAGCGCCTGCACGCTC
* * * * * * *
11447387 ATTTCATGGGTTGACTTTATGCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCAAATTGAG
66 GTTTCGTGGGTTGGC-TTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCAAACTGAG
*
11447450 GGTTG-GGACAACAGGATCAACAGCA-AGTAG-G
128 GGTTGTGG-CAACAGGATCAACAGCACA-CAGCG
11447481 GGGGATCGGGCCGATCC-CTGGCTTGCACATTCTGCCTCGTCCGACCGACTGAGCGCCTGCACGC
1 GGGGATCGGGCCGATCCTC-GGCTTGCACATTCTGCCTC-TCCGACCGACTGAGCGCCTGCACGC
*
11447545 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCA
64 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
11447595 TACGGAGTTC
Statistics
Matches: 214, Mismatches: 50, Indels: 17
0.76 0.18 0.06
Matches are distributed among these distances:
158 3 0.01
159 122 0.57
160 86 0.40
161 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
GGGGATCGGGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGACCGACTGAGCGCCTGCACGCTC
GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAAACTGAGGGT
TGTGGCAACAGGATCAACAGCACACAGCG
Found at i:11448323 original size:26 final size:26
Alignment explanation
Indices: 11448287--11448366 Score: 126
Period size: 26 Copynumber: 3.1 Consensus size: 26
11448277 GTTGACTTAG
*
11448287 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCTCCAGTCTAA
11448313 GCATACGGAGTTCATCTCCAGTCTAA
1 GCATACGGAGTTCATCTCCAGTCTAA
*
11448339 GCATACGAAGTTCAT-TCCATGTCTAA
1 GCATACGGAGTTCATCTCCA-GTCTAA
11448365 GC
1 GC
11448367 CCTAGCCAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
25 4 0.08
26 47 0.92
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAGTCTAA
Found at i:11448693 original size:26 final size:26
Alignment explanation
Indices: 11448656--11448708 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11448646 GTTGGCTTAG
*
11448656 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
11448682 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11448708 G
1 G
11448709 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11448739 original size:184 final size:191
Alignment explanation
Indices: 11448498--11448876 Score: 486
Period size: 195 Copynumber: 2.0 Consensus size: 191
11448488 GTTGACTTAG
* *
11448498 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGACAGTAGGATC-G-A
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGACAGTAGGACCAGCA
* * * *
11448561 -CA-G-CA-C-G-CAGGGGGGACCGGGTCGATCCCCAGCTTGCGTATTCTGCCTCTCCGGCTGGC
66 GCAGGACAGCAGACAGGAGGGACC-GGCCGATCCCCAGCTTGCATATTCTGCCTCTCCGACTGGC
** * * *
11448620 TGAGCGCCCGCACGTTCATTTCGTGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 TGAGCGCCCGCACACTCATTTCGTGGGTTGGCTAAGGCATACGAAGTTCATTCCATGTCTAA
* * * *
11448682 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGACCAGCA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGACAGTAGGACCAGCA
* * *
11448747 GCAGGATCAGCAGCACACAGGAGGGACCGGCCGATCCTCGGCTTGCATATTCTGCCTCTCCGATT
66 GCAGGA-CAGCAG---ACAGGAGGGACCGGCCGATCCCCAGCTTGCATATTCTGCCTCTCCGACT
*
11448812 GGCTGAGTGCCCGCACACTCATTTCGTGGGTTGGCTAAGGCATACGAAGTTCATTCCATGTCTAA
127 GGCTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTAAGGCATACGAAGTTCATTCCATGTCTAA
11448877 ACCCCAGCCG
Statistics
Matches: 164, Mismatches: 19, Indels: 13
0.84 0.10 0.07
Matches are distributed among these distances:
184 55 0.34
185 1 0.01
186 1 0.01
187 2 0.01
188 1 0.01
190 2 0.01
191 1 0.01
192 1 0.01
195 90 0.55
196 10 0.06
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (191 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGACAGTAGGACCAGCA
GCAGGACAGCAGACAGGAGGGACCGGCCGATCCCCAGCTTGCATATTCTGCCTCTCCGACTGGCT
GAGCGCCCGCACACTCATTTCGTGGGTTGGCTAAGGCATACGAAGTTCATTCCATGTCTAA
Found at i:11449586 original size:26 final size:26
Alignment explanation
Indices: 11449535--11449587 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11449525 GTTGGCTTAG
* *
11449535 GCATATGGAGTTCATTCCATGTCTAA
1 GCATAAGGAGTTCATTCCATGCCTAA
11449561 GCATAAGGAGTTCATTCCCA-GCCTAA
1 GCATAAGGAGTTCATT-CCATGCCTAA
11449587 G
1 G
11449588 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCATGCCTAA
Found at i:11449729 original size:14 final size:14
Alignment explanation
Indices: 11449710--11449740 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
11449700 GTGGCATTGG
11449710 GGGTTTCAACGATT
1 GGGTTTCAACGATT
11449724 GGGTTTCAACGATT
1 GGGTTTCAACGATT
11449738 GGG
1 GGG
11449741 GGGCCGGGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.13, G:0.35, T:0.32
Consensus pattern (14 bp):
GGGTTTCAACGATT
Found at i:11456503 original size:159 final size:160
Alignment explanation
Indices: 11456216--11456712 Score: 479
Period size: 159 Copynumber: 3.1 Consensus size: 160
11456206 AAGCATATGA
* * * ** * ** *
11456216 AGTTCATT-CATAGTCTAAG-ATCAGACCAGACCGAGGGTTACGATAGC-AGGATCGGCAGCACA
1 AGTTCATTCCAT-GTCTAAGCACCAGACCAGACCAAGGGTTGCGGCAGCAAGGACCAACAGCACG
* * * * * * * *
11456278 CAGAGGGGATC-GAGCCGATCCTCGGCTTACGCATTCTGCCTCTCCAGCCGGTTGAGCGCCCGCA
65 CAGGGGGGACCGGA-CCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCACA
* *
11456342 CGC-CTGTTTCATGGGTTGGCTTAGGCATAGGG
129 CGCTC-GTTTCGTGGGTTGGCTTAGGCATACGG
* * * * *
11456374 AGTTCATTCCATGTCTAAGCCCCAG-CCTGACCAAGGGTTGTGGCAGC-GGGACCGACAGCACGC
1 AGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTGCGGCAGCAAGGACCAACAGCACGC
* * * * *
11456437 AGAGGGGGACCGGATCGATCCCTGGCTTGTGCATTATGCCTCTCCGGCCAGCTCAGCGCCCACAC
66 AG-GGGGGACCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCACAC
* * *
11456502 GCTCATTTCGTCGGTTGACTTAGGCATACGG
130 GCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * * * ** * *
11456533 AGTTCATTCCCTATCTAAG-ATCGGACCAGACTGAGGGTTGCGGTAGCAAGGATCAACAGCACGC
1 AGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTGCGGCAGCAAGGACCAACAGCACGC
* * ** * *
11456597 AGGGGGGACTGGACCGGTCCCCGGCTTGCGCATTCTGCCTCTTTGGCTAGCTGAGCACCCACACG
66 AGGGGGGACCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCACACG
*
11456662 CTCGTTTCGTGGGTTGGCTTAGGCATACAG
131 CTCGTTTCGTGGGTTGGCTTAGGCATACGG
11456692 AGTTCATTCCATGTCTAAGCA
1 AGTTCATTCCATGTCTAAGCA
11456713 TACGGAGTTC
Statistics
Matches: 271, Mismatches: 60, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
158 47 0.17
159 205 0.76
160 19 0.07
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (160 bp):
AGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTGCGGCAGCAAGGACCAACAGCACGC
AGGGGGGACCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCACACG
CTCGTTTCGTGGGTTGGCTTAGGCATACGG
Found at i:11456735 original size:26 final size:26
Alignment explanation
Indices: 11456684--11456736 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11456674 GTTGGCTTAG
*
11456684 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGCCTAA
*
11456710 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACAGAGTTCATT-CCATGCCTAA
11456736 G
1 G
11456737 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGCCTAA
Found at i:11457088 original size:26 final size:26
Alignment explanation
Indices: 11457052--11457104 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11457042 GTTGACTTAG
11457052 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
11457078 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11457104 G
1 G
11457105 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11457401 original size:342 final size:348
Alignment explanation
Indices: 11456615--11457644 Score: 1123
Period size: 342 Copynumber: 2.9 Consensus size: 348
11456605 CTGGACCGGT
* * * * *
11456615 CCCC-GGCTTGCGCATTCTGCCTCTTTGGCTAGCTGAGCACCCACACGCTCGTTTCGTGGGTTGG
1 CCCCTGGCTTGCGCATTATGCCTCTTCGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGA
* * *
11456679 CTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCAGAC
66 CTTAGGCATACAGAGTTCATCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
*
11456744 CGGACCGAGGGTTGCGACAGCAGGACCAGCAACAGGATCGGCAGCACACAGGGGGGGACTGGGCT
130 CGGACCGAGGGTT-----A-C--G---A-CAACAGGATCGGTAGCACACA-GGGGGGACTGGGCT
* * * * * ** * *
11456809 AATCCCCGGCTTGCGCATTCTGCCTCTTCAG-CCGGCTGAGCACCTGCACACTTGTTTCATTGGT
182 GATCCCCGGCTTGCGCATTCTGCCT-TTCAGACCGACTGAGCGCCCGCACGCCCGTTTCGTGGGT
11456873 TGGCATT-GGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACCGAGGGTTGTGGCAGT
246 TGG-ATTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA-TCTGGACCGAGGGTTGTGGCAGT
* *
11456936 AGGACCGGCAGCGGGATTGGTAGCATGTAGAGGGAGACCGAGCTGA
309 GGGACCGGCAGC--GA---GTAGCATG-AGAGGGAGACCGAGCCGA
* * * * * *
11456982 -TCCTCAGCTTGCGCATTATGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTG
1 CCCCT-GGCTTGCGCATTATGCCTCTTCGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTG
11457046 ACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
65 ACTTAGGCATACAGAGTTCAT-CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * *
11457111 CTGGACCGAGGGTTACGACAACAAGATCGGTAGCACGCAGGAGGGACTAGGCTGATCCCCGGCTT
129 CCGGACCGAGGGTTACGACAACAGGATCGGTAGCACACAGGGGGGACTGGGCTGATCCCCGGCTT
* * * * * *
11457176 GCGCATTCTACCTTTCCGACCGACTGGGTGCCCACACGCCCGTTTCGTGGGTTGGTTTAGGCATA
194 GCGCATTCTGCCTTTCAGACCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGATTAGGCATA
* * *
11457241 GGGAGTTCATTCCATGTCTAAGCCCCATCTGGATCGAGGGTTGTGGCAGTGGGACCGGTAGC-A-
259 CGGAGTTCATTCCATGTCTAAGCCCCATCTGGACCGAGGGTTGTGGCAGTGGGACCGGCAGCGAG
11457304 T-GCA-G-G-GGG-GACCGAGCCGA
324 TAGCATGAGAGGGAGACCGAGCCGA
* * *
11457324 CCCCTGGCTTGTGCATTATGCCTCTTCGGCCAGCTCAACACCCGCACGCTCGTTTCGTGGGTTGA
1 CCCCTGGCTTGCGCATTATGCCTCTTCGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGA
* * * *
11457389 CTTATGCATACAGAGTTCAGTCTCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAAC
66 CTTAGGCATACAGAGTTCA-TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
** * *** *
11457454 CGGACCGAGGGTTGTGGCAGTGGGATCGGTAGCACACAGGGGGGA-TCGGGCTGATCCCCGACTT
130 CGGACCGAGGGTTACGACAACAGGATCGGTAGCACACAGGGGGGACT-GGGCTGATCCCCGGCTT
* * * * * * *
11457518 GCGCATTCTGCCTCTCTGACCAACTGAGCGCCCGCATGCCCGTTTCGTGGTTTAGCTTAGGCATA
194 GCGCATTCTGCCTTTCAGACCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGATTAGGCATA
* * * * * *
11457583 TGGAGTTCATTCCATTTCTAAGCCCCAGCTGGACCGAGGGTTGTGGTAGCGGGACCGACAGC
259 CGGAGTTCATTCCATGTCTAAGCCCCATCTGGACCGAGGGTTGTGGCAGTGGGACCGGCAGC
11457645 ACGCAGCTTG
Statistics
Matches: 570, Mismatches: 84, Indels: 43
0.82 0.12 0.06
Matches are distributed among these distances:
341 1 0.00
342 279 0.49
343 7 0.01
344 1 0.00
346 1 0.00
347 3 0.01
348 1 0.00
352 1 0.00
354 8 0.01
355 121 0.21
356 18 0.03
357 1 0.00
360 1 0.00
362 1 0.00
363 1 0.00
366 2 0.00
368 120 0.21
369 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (348 bp):
CCCCTGGCTTGCGCATTATGCCTCTTCGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGA
CTTAGGCATACAGAGTTCATCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
GGACCGAGGGTTACGACAACAGGATCGGTAGCACACAGGGGGGACTGGGCTGATCCCCGGCTTGC
GCATTCTGCCTTTCAGACCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGATTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCCATCTGGACCGAGGGTTGTGGCAGTGGGACCGGCAGCGAGTA
GCATGAGAGGGAGACCGAGCCGA
Found at i:11458131 original size:26 final size:26
Alignment explanation
Indices: 11458085--11458161 Score: 111
Period size: 26 Copynumber: 3.0 Consensus size: 26
11458075 TGACTTAGGA
*
11458085 ATACAGAGTTCA-TCACCAGTCTAAGC
1 ATACGGAGTTCATTC-CCAGTCTAAGC
* *
11458111 ATATGGAGTTCATTCCTAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
11458137 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
11458162 ATCACACTAG
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
26 43 0.96
27 2 0.04
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:11458550 original size:158 final size:157
Alignment explanation
Indices: 11458135--11458613 Score: 473
Period size: 158 Copynumber: 3.0 Consensus size: 157
11458125 CCTAGTCTAA
* ** * * *
11458135 GCATACGGAGTTCATTCCCAGTCTAAGATCACACTAGATCGAGGGTTGCGACAGTAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
11458200 GCACGCAGGGGGGACGAGGCCGATCTCCGGCTTGCGCATTCTACCTTTTCGATCGACTGAGTGCC
66 GCACGCAAGGGGGACGA-GCTGATCCCCGACTTGCGCATTCTGCCTTTTCGACCGACTGAGTGCC
* *
11458265 CGCATGCCCATTTTGTGGGTTGGCTTAG
130 CGCATGCTCATTTCGTGGGTTGGCTTAG
* ** * * * * *
11458293 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCAGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * * * *
11458356 TAGCACGTAGAGGGGGATCG-GGTCGAT-CCCGACTTGCGCATTATGCCTCTCCGGCCGGCTCAG
64 CAGCACGCA-AGGGGGA-CGAGCT-GATCCCCGACTTGCGCATTCTGCCTTTTCGACCGACTGAG
* * *
11458419 TGCCCGCATGCTCGTTTCGTGAGTTGACTTAG
126 TGCCCGCATGCTCATTTCGTGGGTTGGCTTAG
* *
11458451 GCATACGGCA-TTCATTCCCAATCTGAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGAC
1 GCATACGG-AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
11458515 AGCATGCATGGGGGACCGAGCTGATCCCCGTCTTGCGCATTCTGCCTTTTCAACCGACTGAGCGC
65 AGCACGCAAGGGGGA-CGAGCTGATCCCCGACTTGCGCATTCTGCCTTTTCGACCGACTGAGTGC
*
11458580 CCGCACGCTCATTTCGTGGGTTGGCTTAG
129 CCGCATGCTCATTTCGTGGGTTGGCTTAG
11458609 GCATA
1 GCATA
11458614 GTTCATTCCA
Statistics
Matches: 248, Mismatches: 63, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
157 17 0.07
158 214 0.86
159 15 0.06
160 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAAGGGGGACGAGCTGATCCCCGACTTGCGCATTCTGCCTTTTCGACCGACTGAGTGCCC
GCATGCTCATTTCGTGGGTTGGCTTAG
Found at i:11458993 original size:26 final size:26
Alignment explanation
Indices: 11458963--11459012 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
11458953 GACTTAGGCA
11458963 TACGGAGTTCATCCCCAATCTAAGCC
1 TACGGAGTTCATCCCCAATCTAAGCC
* *
11458989 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAATCTAAG
11459013 ATCGGACTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAATCTAAGCC
Found at i:11459343 original size:158 final size:157
Alignment explanation
Indices: 11458989--11459487 Score: 432
Period size: 158 Copynumber: 3.1 Consensus size: 157
11458979 AATCTAAGCC
* * * * *
11458989 TACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGAACTGGGGGTTGCGGCAGCAGGATTGGCAGC
1 TACGGAGTTCATT-CCAGTCTAAGATCGGATCAGATC-GAGGGTTGCGGCAGTAGGATCGGCAGC
** * * **
11459053 ACGTAGGGGGGTTCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGACCGACAAAGTGCCC
64 ACGTAGGGGGGACCGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTTCGGACCGACAAAGCACCC
*
11459118 GCACGCCCGTTTCGTGGGTTGGATTAGGCA
128 GCACGCCCGTTTCATGGGTTGGATTAGGCA
* * ** * * *
11459148 TAGGGAGTTCATTCCATGTCTAAG-CCCCATCTGGATCGAGGGTTGTGGCAGTGGGATCGGCAGC
1 TACGGAGTTCATTCCA-GTCTAAGATCGGATC-AGATCGAGGGTTGCGGCAGTAGGATCGGCAGC
* * * * * * **
11459212 ACGCAGAGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTTGG-TCGGCTCAGCACCC
64 ACGTAGGGGGGACCGGGCCGATCCC-GGCTTGCGCATTCTGCCTCTTCGGACCGACAAAGCACCC
* *
11459276 GCACGCTCGTTTCATGGGTT-GACTTATGCA
128 GCACGCCCGTTTCATGGGTTGGA-TTAGGCA
* * ** **
11459306 TACGGAGTTCAATCTCAGTCTAAGATCGGATCAGATCGAGGGTTACAACAGTAGGATCGATAGCA
1 TACGGAGTTCATTC-CAGTCTAAGATCGGATCAGATCGAGGGTTGCGGCAGTAGGATCGGCAGCA
* ** * ** ** *
11459371 CGTAGGGGGGACCGGGTCGATCTCCGGCTTGCGCATTCTGCCTC-TCCAACCGGCTGAGTGCCTG
65 CGTAGGGGGGACCGGGCCGATC-CCGGCTTGCGCATTCTGCCTCTTCGGACCGACAAAGCACCCG
* * * *
11459435 TACGCCTGTTTCATGCGTTGGCTTAGGCA
129 CACGCCCGTTTCATGGGTTGGATTAGGCA
*
11459464 TAGGGAGTTCATTCCATGTCTAAG
1 TACGGAGTTCATTCCA-GTCTAAG
11459488 CCCCAACCGG
Statistics
Matches: 268, Mismatches: 61, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
157 5 0.02
158 171 0.64
159 89 0.33
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
TACGGAGTTCATTCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGGCAGTAGGATCGGCAGCAC
GTAGGGGGGACCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTTCGGACCGACAAAGCACCCGCA
CGCCCGTTTCATGGGTTGGATTAGGCA
Found at i:11459525 original size:158 final size:157
Alignment explanation
Indices: 11459050--11459530 Score: 471
Period size: 158 Copynumber: 3.0 Consensus size: 157
11459040 CAGGATTGGC
** * * * * *
11459050 AGCACGTAGGGGGGTTCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGACCGACAAAGTG
1 AGCACGTAGGGGGGACCGGGCCGAT-CCCGGCTTGCGCATTCTGCCTC-TCCGACCGGCTAAGTG
* * * * *
11459115 CCCGCACGCCCGTTTCGTGGGTTGGATTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCT
64 CCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACC
**
11459180 GGATCGAGGGTTGTGGCAGTGGGATCGGC
129 GGATCGAGGGTTGTGGCAGTGGGATCGAT
* * * ** ** * **
11459209 AGCACGCAGAGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTTGGTCGGCTCAGCAC
1 AGCACGTAGGGGGGACCGGGCCGATCCC-GGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGTGC
* * * * ** ** *
11459274 CCGCACG-CTCGTTTCATGGGTTGACTTATGCATACGGAGTTCAATCTCA-GTCTAAGATCGGAT
65 CCGCACGCCT-GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTC-CATGTCTAAGCCCCAAC
* **** *
11459337 CAGATCGAGGGTTACAACAGTAGGATCGAT
128 CGGATCGAGGGTTGTGGCAGTGGGATCGAT
* * *
11459367 AGCACGTAGGGGGGACCGGGTCGATCTCCGGCTTGCGCATTCTGCCTCTCCAACCGGCTGAGTGC
1 AGCACGTAGGGGGGACCGGGCCGATC-CCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGTGC
* * *
11459432 CTGTACGCCTGTTTCATGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCG
65 CCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCG
* *
11459497 GATCGAGGGTTGTGGCAGCGGGACCGAT
130 GATCGAGGGTTGTGGCAGTGGGATCGAT
11459525 AGCACG
1 AGCACG
11459531 CAGAAAGGGA
Statistics
Matches: 246, Mismatches: 70, Indels: 13
0.75 0.21 0.04
Matches are distributed among these distances:
157 3 0.01
158 200 0.81
159 43 0.17
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
AGCACGTAGGGGGGACCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGTGCC
CGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGG
ATCGAGGGTTGTGGCAGTGGGATCGAT
Found at i:11459794 original size:285 final size:285
Alignment explanation
Indices: 11459284--11459804 Score: 753
Period size: 285 Copynumber: 1.8 Consensus size: 285
11459274 CCGCACGCTC
* *
11459284 GTTTCATGGGTTGACTTATGCATACGGAGTTCAATCTCAGTCTAAGATCGGATCAGATCGAGGGT
1 GTTTCATGGGTTGACTTATGCATACGGAGTTCAATCTCAGTCTAAGATCAGACCAGATCGAGGGT
** * * * *
11459349 TACAACAGTAGGATCGATAGCACGTAGGGGGGACCGGGTCGATCTCCGGCTTGCGCATTCTGCCT
66 TACAACAACAGGATCGATAGCACGCAGGGGGGACCGAGCCAATCTCCGGCTTGCGCATTCTGCCT
* *
11459414 CTCCAACCGGCTGAGTGCCTGTACGCCTGTTTCATGCGTTGGCTTAGGCATAGGGAGTTCATTCC
131 CTCCAACCGGCTGAGCGCCTGTACGCCTATTTCATGCGTTGGCTTAGGCATAGGGAGTTCATTCC
11459479 ATGTCTAAGCCCCAACCGGATCGAGGGTTGTGGCAGCGGGACCGATAGCACGCAGAAAGGGACCA
196 ATGTCTAAGCCCCAACCGGATCGAGGGTTGTGGCAGCGGGACCGATAGCACGCAGAAAGGGACCA
11459544 GGCCGATCTAAGCCCCTGTACTCTT
261 GGCCGATCTAAGCCCCTGTACTCTT
* * * * *
11459569 GTTTCATGGGTTGACTTATGCGTATGGAGTTC-ATTTCTAGTTTAAGATCAGACCGGA-CTGAGG
1 GTTTCATGGGTTGACTTATGCATACGGAGTTCAATCTC-AGTCTAAGATCAGACCAGATC-GAGG
* * * * * *
11459632 GTTGCGACAACAGGATCGGTAGCACGCATGGGGGATCGAGCCAATC-CCTGGTTTGCGCATTCTG
64 GTTACAACAACAGGATCGATAGCACGCAGGGGGGACCGAGCCAATCTCC-GGCTTGCGCATTCTG
* * *
11459696 CCTCTCCAGCTGGCTGAGCGCCTGTACGTCC-ATTTCATGGGTTGGCTTAGGCATAGGGAGTTCA
128 CCTCTCCAACCGGCTGAGCGCCTGTACG-CCTATTTCATGCGTTGGCTTAGGCATAGGGAGTTCA
*
11459760 TTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGGGA
192 TTCCATGTCTAAGCCCCAACCGGATCGAGGGTTGTGGCAGCGGGA
11459805 TCGGCGGCAC
Statistics
Matches: 207, Mismatches: 25, Indels: 8
0.86 0.10 0.03
Matches are distributed among these distances:
284 7 0.03
285 198 0.96
286 2 0.01
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.25
Consensus pattern (285 bp):
GTTTCATGGGTTGACTTATGCATACGGAGTTCAATCTCAGTCTAAGATCAGACCAGATCGAGGGT
TACAACAACAGGATCGATAGCACGCAGGGGGGACCGAGCCAATCTCCGGCTTGCGCATTCTGCCT
CTCCAACCGGCTGAGCGCCTGTACGCCTATTTCATGCGTTGGCTTAGGCATAGGGAGTTCATTCC
ATGTCTAAGCCCCAACCGGATCGAGGGTTGTGGCAGCGGGACCGATAGCACGCAGAAAGGGACCA
GGCCGATCTAAGCCCCTGTACTCTT
Found at i:11460040 original size:157 final size:158
Alignment explanation
Indices: 11459569--11460088 Score: 541
Period size: 158 Copynumber: 3.3 Consensus size: 158
11459559 CTGTACTCTT
* * * * *
11459569 GTTTCATGGGTTGACTTATGCGTATGGAGTTCATTTC-TAGTTTAAGATCAGACCGGACTGAGGG
1 GTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCAT-GTCTAAGATCAGACCGGACTGAGGG
* * * * * * * *
11459633 TTGCGACAACAGGATCGGTAGCACGCATGGGGGATCGAGCCAATCCCTGGTTTGCGCATTCTGCC
65 TTGTGGCAGCAGGATCGGTAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCC
* *
11459698 TCTCCAG-CTGGCTGAGCGCCTGTACG-TCC
130 TCTTCAGTC-GGCTGAGCGCCTGCACGCT-C
* * **
11459727 ATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGA-TCGAGG
1 GTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACT-GAGG
* ** * * * *
11459790 GTTGTGGCAGCGGGATCGGCGGCACGCAGAGGGGGACCGGGTCGATCCCCAGCTTGCGCATTATG
64 GTTGTGGCAGCAGGATCGGTAGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTG
*
11459855 CCTCTTCAGTCGGCTCAGCGCCTGCACGCTC
128 CCTCTTCAGTCGGCTGAGCGCCTGCACGCTC
* * *
11459886 GTTTCGTGGGTT-GCTTAGGCATATGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACTGAGGG
1 GTTTCATGGGTTGGCTTAGGCATATGGAGTTCATT-CCATGTCTAAGATCAGACCGGACTGAGGG
* * * *
11459949 TTGTGGCAGCAAGATCGATAGCACACAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACC
65 TTGTGGCAGCAGGATCGGTAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCC
* **
11460014 TCTTCGGTCGGCTGAGCGCCCACACGCTC
130 TCTTCAGTCGGCTGAGCGCCTGCACGCTC
* * * * * *
11460043 GCTTCGTGGTTTGGCTTACGCATACGGAGTTAATTCCATGTCTAAG
1 GTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
11460089 CATATGGAGT
Statistics
Matches: 297, Mismatches: 54, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
157 73 0.25
158 153 0.52
159 69 0.23
160 2 0.01
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
GTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGGGT
TGTGGCAGCAGGATCGGTAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCT
CTTCAGTCGGCTGAGCGCCTGCACGCTC
Found at i:11460098 original size:26 final size:26
Alignment explanation
Indices: 11460062--11460114 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11460052 TTTGGCTTAC
11460062 GCATACGGAGTTAATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
* *
11460088 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
11460114 G
1 G
11460115 ATTTTAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:11464942 original size:159 final size:157
Alignment explanation
Indices: 11464448--11464943 Score: 473
Period size: 159 Copynumber: 3.1 Consensus size: 157
11464438 TAAGCATATA
* * * *
11464448 GAGTTCATTCTCAGTGTAAGATTGGACCGGACCGAGGGTTACAGCAGCAGGAT-AGGCAGCACGT
1 GAGTTCATTC-CAGTCTAAGATCGGACC-GACCGAGGGTTACAGCAGCAGGATCA-ACAGCACGC
* * * * *
11464512 A-GGGTGGACCGGGCCGATCTCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGTGCCCGCAC
63 AGGGGGGGACCGGGCCGATCACCGGCTTGCGCATTCTACCTCTCCAGTAGGCTGAGTGCCCACAC
* * * *
11464576 GCCCGTTTCGTGAGTTGGCTTAGGCATAGG
128 GCTCATTTCGTGGGTTGGCTTAGGCATACG
* ** ** * * *
11464606 GAGTTCATTCCATGTCTAAG-CCCCAGCCGACCTGAGGGTTGTAGCAGCAGGACCGACAGTACGC
1 GAGTTCATTCCA-GTCTAAGATCGGA-CCGACC-GAGGGTTACAGCAGCAGGATCAACAGCACGC
* * * * * * * * * * *
11464670 AGAGGGGGATCGGACTGATCACCGGCTTGCGCATTATGCTTCTCCGACCTA--CTCATTGCCCAT
63 AGGGGGGGACCGGGCCGATCACCGGCTTGCGCATTCTACCTCTCC-A-GTAGGCTGAGTGCCCAC
* *
11464733 ACGCTCATTTTGTGGGTTGACTTAGGCATACG
126 ACGCTCATTTCGTGGGTTGGCTTAGGCATACG
* *
11464765 GAGTTCATTCCCAATCTAAGATCGGACCGAACCGAGGGTTACCA-CAGCAGGATCAACAGCATGC
1 GAGTTCATT-CCAGTCTAAGATCGGACCG-ACCGAGGGTTA-CAGCAGCAGGATCAACAGCACGC
* * * *
11464829 AGGGGGGGACCGGGCCGGTCCCCGACTTGCGCATTCTACCTCTCCAGTAGGCTGAGCGCCCACAC
63 AGGGGGGGACCGGGCCGATCACCGGCTTGCGCATTCTACCTCTCCAGTAGGCTGAGTGCCCACAC
*
11464894 ACTCATTTCGTGGGTTGGCTTAGGCATACG
128 GCTCATTTCGTGGGTTGGCTTAGGCATACG
11464924 GAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCA-GTCTAAG
11464944 GATACAGAGT
Statistics
Matches: 261, Mismatches: 63, Indels: 27
0.74 0.18 0.08
Matches are distributed among these distances:
157 9 0.03
158 46 0.18
159 196 0.75
160 9 0.03
161 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GAGTTCATTCCAGTCTAAGATCGGACCGACCGAGGGTTACAGCAGCAGGATCAACAGCACGCAGG
GGGGGACCGGGCCGATCACCGGCTTGCGCATTCTACCTCTCCAGTAGGCTGAGTGCCCACACGCT
CATTTCGTGGGTTGGCTTAGGCATACG
Found at i:11465320 original size:26 final size:26
Alignment explanation
Indices: 11465284--11465336 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11465274 GTTGACCTAG
11465284 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
11465310 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11465336 G
1 G
11465337 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11465800 original size:26 final size:26
Alignment explanation
Indices: 11465764--11465816 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11465754 GTTGGCTTAG
11465764 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11465790 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11465816 G
1 G
11465817 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11467560 original size:157 final size:159
Alignment explanation
Indices: 11467143--11467561 Score: 438
Period size: 159 Copynumber: 2.6 Consensus size: 159
11467133 AGGGGGTTCA
* * ** *
11467143 GGCGTATCCCCGGCTTACGCATTCTGCCTCTTCGACCGACTGAGCGCCCGCACGCCCGTTTCGTG
1 GGCG-ATCCCCGACTTACGCATTCTGCCTCTACGACCGGTTGAGCGCCCGCACGCTCGTTTCGTG
* ** *
11467208 TGTTGGCTTAGGCATTGGGAGTTCATTCCATGTCTAAGCCCTAGCAGGACCGAGGGTTGTGGCAG
65 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGCAGGACCGAGGGTTGTGGCAG
**** ** * *
11467273 TGGCACCGGTAGCACGCAGAGGGGGATCGG
130 CAAAACCGACAACACGCAGAGGGGGATCCG
* * * * * * *
11467303 GGCGATCCTC-AGCTTGCTCATTATGCCTCTCCAACCGGTTCAGCGCCCGCACGCTCGTTTCGTG
1 GGCGATCCCCGA-CTTACGCATTCTGCCTCTACGACCGGTTGAGCGCCCGCACGCTCGTTTCGTG
* * * * *
11467367 GGTTGACTTCGGCATACGGAGTTCATTCCCA-ATCTAAG-ATTGGATCA-GACCGAGGGTTGTGG
65 GGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACT--AGCAGGACCGAGGGTTGTGG
*
11467429 CA-CAAAATCGACAACACGCAG-GGGGGA-CCG
127 CAGCAAAACCGACAACACGCAGAGGGGGATCCG
* *
11467459 GGCTGGTCCCCGACTTACGCATTCTGCCTCTACGACCGGTTGAGCACCCGCACGCTCGTTTCGTG
1 GGC-GATCCCCGACTTACGCATTCTGCCTCTACGACCGGTTGAGCGCCCGCACGCTCGTTTCGTG
*
11467524 GGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAG
65 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
11467562 GATACGGAGT
Statistics
Matches: 210, Mismatches: 42, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
156 8 0.04
157 86 0.41
158 13 0.06
159 93 0.44
160 10 0.05
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (159 bp):
GGCGATCCCCGACTTACGCATTCTGCCTCTACGACCGGTTGAGCGCCCGCACGCTCGTTTCGTGG
GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGCAGGACCGAGGGTTGTGGCAGC
AAAACCGACAACACGCAGAGGGGGATCCG
Found at i:11467577 original size:26 final size:26
Alignment explanation
Indices: 11467537--11467587 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
11467527 TGGCTTAGGC
11467537 ATACGAAGTTCATT-CCATGTCTAAGG
1 ATACGAAGTTCATTCCCA-GTCTAAGG
* *
11467563 ATACGGAGTTTATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
11467588 ATCAGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGG
Found at i:11468243 original size:159 final size:158
Alignment explanation
Indices: 11467945--11468284 Score: 416
Period size: 159 Copynumber: 2.1 Consensus size: 158
11467935 GTCTAAGCAA
** * * * *
11467945 ACGGAGTTCATTCCCA-GTCTAAGATCTAACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCA
1 ACGGAGTTCATT-CCATGTCTAAGCCCCAGCCGGATCGAGGGTTGCGACAGCAGGATCGACAGCA
* * * * * *
11468009 CGTAGGGGGGACCGAGCCAATCCCCATCTTGTGCATTTTGCTTCTCCGGCCGACTGAGCACCCGC
65 CGCAGGGGGGACCGAGCCAATCCCCATCTTGTGCATTCTACCTCTCCAGCCGACTGAGCACCCAC
11468074 ACGTCTATTTCGTGGGTTGGCTTAGGCAT
130 ACGTCTATTTCGTGGGTTGGCTTAGGCAT
* * * * * *
11468103 AGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGGGATCGGCAGTAC
1 ACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGCGACAGCAGGATCGACAGCAC
* * *
11468168 GCAGAGGGGGACCGGGCCAATCCTCGA-CTTGTGCATTCTACCTCTCCAGTCGACTGAGCACCCA
66 GCAG-GGGGGACCGAGCCAATCC-CCATCTTGTGCATTCTACCTCTCCAGCCGACTGAGCACCCA
* *
11468232 CACAT-TCATTTCGTGGGTTGGCTTTGGCAT
129 CACGTCT-ATTTCGTGGGTTGGCTTAGGCAT
11468262 ACGGAGTTCATTCCATGTCTAAG
1 ACGGAGTTCATTCCATGTCTAAG
11468285 TATACGCCGG
Statistics
Matches: 154, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
157 3 0.02
158 53 0.34
159 96 0.62
160 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
ACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGCGACAGCAGGATCGACAGCAC
GCAGGGGGGACCGAGCCAATCCCCATCTTGTGCATTCTACCTCTCCAGCCGACTGAGCACCCACA
CGTCTATTTCGTGGGTTGGCTTAGGCAT
Found at i:11469455 original size:26 final size:26
Alignment explanation
Indices: 11469425--11469477 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11469415 GTTGACTTAG
*
11469425 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
* *
11469451 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
11469477 G
1 G
11469478 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:11470055 original size:159 final size:159
Alignment explanation
Indices: 11469724--11470194 Score: 418
Period size: 158 Copynumber: 3.0 Consensus size: 159
11469714 CGGCTTACGA
* * * * * * * ** * *
11469724 CCGAACTGAGGGTTGTGGTAGCAGGATCGATAGCACGCAGGGGGGACCGGGTTGATCCCCGGTTT
1 CCGAACCGAAGGTTGTGGCAGCAGAATCAACAGCACGCAGAGGGGACCGGGCCGATCCTCGGCTT
** * * * *
11469789 ATGCATTCTGCCTCTCCGATCGGCTGAGCGCCAGCACG-TCCGTTTCGTGGGTTGGCTTAGGCAT
66 GCGTATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCT-CGTTTCGTGGGTTGGCTTAGGCAT
* * *
11469853 AGGGAGTTCATT-CTATGTCAAAGCCCCAG
130 ACGGAGTTCATTCCCATGTCAAAGCACCAG
* * ** * * *
11469882 CCGAACCGAGGGTTGTGGTAGTGGGA-CTGACAGCACGTAGAGGGGGACCGGGCCGATCC-CTGG
1 CCGAACCGAAGGTTGTGGCAGCAGAATC-AACAGCACGCAGA-GGGGACCGGGCCGATCCTC-GG
* * * * *
11469945 CTTGC-TCGTTATGCCTCTCCGACCGGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGG
63 CTTGCGT-ATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
* *
11470009 CATACGGAGTTCATTCCCA-GTCTAAG-ATCAG
127 CATACGGAGTTCATTCCCATGTCAAAGCACCAG
* * * ** *
11470040 ACCGGATCGAAGGTTGTGGCAGCAGAATCAACAGCACGCGGAGGGGATTGGGTCGATCCTCGGCT
1 -CCGAACCGAAGGTTGTGGCAGCAGAATCAACAGCACGCAGAGGGGACCGGGCCGATCCTCGGCT
* * * * * *
11470105 TGCGTATTCTGCCTTTCCTACTGACTGAGCGCCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCAT
65 TGCGTATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
11470170 ACGGAGTTCATT-CCATGTCAAAGCA
130 ACGGAGTTCATTCCCATGTCAAAGCA
11470195 TACGGAGTTC
Statistics
Matches: 251, Mismatches: 50, Indels: 23
0.77 0.15 0.07
Matches are distributed among these distances:
157 4 0.02
158 125 0.50
159 118 0.47
160 4 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
CCGAACCGAAGGTTGTGGCAGCAGAATCAACAGCACGCAGAGGGGACCGGGCCGATCCTCGGCTT
GCGTATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
CGGAGTTCATTCCCATGTCAAAGCACCAG
Found at i:11470334 original size:184 final size:184
Alignment explanation
Indices: 11470008--11470377 Score: 471
Period size: 184 Copynumber: 2.0 Consensus size: 184
11469998 GTTGACTTAG
* *
11470008 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTGTGGCAGCAGAATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAAGTTGCGGCAGCAGAATCAACA
* * * ** * * * *
11470073 GCACGCGGAGGGGATTGGGTCGATCCTCGGCTTGCGTATTCTGCCTTTCCTACTGACTGAGCGCC
66 GCACGCGGAGGGGATCGGGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCGACTGAGCACC
* *
11470138 CGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAA
131 CGCACACTCGTTTCGTAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCAAA
* ****
11470192 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CTGAAAGTTGCGGCAGCAGGATTGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAAAGTTGCGGCAGCAGAATCAAC
11470256 AGCACGCAGTG-GGGGATCGGG-CTGATCCCCAGCTTGCACATTCTG-CTCCTCCGACCGAC-GA
65 AGCACGC-G-GAGGGGATCGGGTC-GATCCCCAGCTTGCACATTCTGCCT-CTCCGACCGACTGA
* * *
11470317 GCACCCGCATACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
126 GCACCCGCACACTCGTTTCGTAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCAAA
11470376 GC
1 GC
11470378 CCCAGTCAGA
Statistics
Matches: 160, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
183 1 0.01
184 122 0.76
185 36 0.22
186 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAAGTTGCGGCAGCAGAATCAACA
GCACGCGGAGGGGATCGGGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCGACTGAGCACC
CGCACACTCGTTTCGTAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCAAA
Found at i:11470576 original size:26 final size:26
Alignment explanation
Indices: 11470523--11470578 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
11470513 TGGGTTGCCT
*
11470523 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAATC
** * *
11470549 TAAGCATATTGAGTTCATTCTCAATC
1 TAAGCATACGGAGTTCATCCCCAATC
11470575 TAAG
1 TAAG
11470579 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAATC
Found at i:11471082 original size:26 final size:26
Alignment explanation
Indices: 11471052--11471104 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11471042 GTTGACTTAG
*
11471052 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
11471078 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
11471104 G
1 G
11471105 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:11471300 original size:26 final size:26
Alignment explanation
Indices: 11471245--11471300 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
11471235 TGGGTTGGCT
*
11471245 TAAGCATACGGAGTTCATTCCATGTT
1 TAAGCATACGGAGTTCATTCCATGTC
11471271 TAAGCATACGGAGTTCATTCCCA-GTC
1 TAAGCATACGGAGTTCATT-CCATGTC
11471297 TAAG
1 TAAG
11471301 ATTTTGAGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCATGTC
Found at i:11475511 original size:26 final size:26
Alignment explanation
Indices: 11475462--11475514 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11475452 GTTGGCTTAG
* *
11475462 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATGGAGTCCATCCCATGTCTAA
11475488 GCATATGGAGTCCACTCCCA-GTCTAA
1 GCATATGGAGTCCA-TCCCATGTCTAA
11475514 G
1 G
11475515 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTCCATCCCATGTCTAA
Found at i:11476215 original size:26 final size:26
Alignment explanation
Indices: 11476185--11476263 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
11476175 GTTGACTTAG
11476185 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
11476211 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
11476237 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
11476263 G
1 G
11476264 ATCAGATCGA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:11476842 original size:159 final size:160
Alignment explanation
Indices: 11476502--11477038 Score: 492
Period size: 159 Copynumber: 3.4 Consensus size: 160
11476492 CTGGCTCAGT
* * * * * * *
11476502 GCCCGGACGCTCATTTCGTGGGTTGACTTATGCATACAGATTTCATTCC-TAGTCTAAG-ATCAA
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCATCAG
** * * * * *
11476565 ACCAGACTGAGGGTTGC-GACAGCAAGATCGGCAGCAC-ACAG-GTGGGACCAGGCTGATCCCC-
65 ACCAGACCAAGGGTTGCAG-CAGCAGGATCGACAGCACGA-AGAGGGGGAACAGGCCGATCCCCA
* * ** *
11476626 GACTTGCGCATTGT-CTCTCTCCGGTCGGCTGAGC
128 G-CTTGCGCATTATGC-CTCTCTGACCGGCGGAGC
* * *
11476660 GCCCGCACGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCAG
1 GCCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATCAG
** * ** * * * *
11476724 -CTGGACCGAGGGTTGTGGCAGCGGGA-CTGGCAGCACGAAGAGGGGGAACGGGCCGATCCTC-G
65 ACCAGACCAAGGGTTGCAGCAGCAGGATC-GACAGCACGAAGAGGGGGAACAGGCCGATCCCCAG
* *
11476786 ACTTGTGCATTATGCCTCT-TCGATCGG-GGCAGC
129 -CTTGCGCATTATGCCTCTCT-GACCGGCGG-AGC
* * * *
11476819 GCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACGGATTTCATTCCCA-GTCTAAG-ATCAG
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCATCAG
* * *
11476882 ACCAGACCAAGGGTTGCAGCAGCAGGATCGACAGCACGTAGGGGGGGACCAGGCCGATCCCCAGC
65 ACCAGACCAAGGGTTGCAGCAGCAGGATCGACAGCACGAAGAGGGGGAACAGGCCGATCCCCAGC
* *
11476947 TTGCGCATTCTGCCTCTCTGACCGGCTGAGC
130 TTGCGCATTATGCCTCTCTGACCGGCGGAGC
11476978 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
11477039 ACGAGGTTCA
Statistics
Matches: 307, Mismatches: 53, Indels: 36
0.78 0.13 0.09
Matches are distributed among these distances:
157 2 0.01
158 82 0.27
159 212 0.69
160 11 0.04
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (160 bp):
GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATCAGA
CCAGACCAAGGGTTGCAGCAGCAGGATCGACAGCACGAAGAGGGGGAACAGGCCGATCCCCAGCT
TGCGCATTATGCCTCTCTGACCGGCGGAGC
Found at i:11477059 original size:26 final size:26
Alignment explanation
Indices: 11477009--11477061 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
11476999 GTTGGCTTAG
*
11477009 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
11477035 GCATAC-GAGGTTCATTCCCA-ATCTAA
1 GCATACGGA-GTTCATT-CCATATCTAA
11477061 G
1 G
11477062 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.08
26 19 0.79
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:11478321 original size:159 final size:158
Alignment explanation
Indices: 11477936--11478441 Score: 481
Period size: 159 Copynumber: 3.2 Consensus size: 158
11477926 CCCAGATTAT
* * * *
11477936 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCAGCAGTAGG-TTCGAC
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATT-GAC
* * * * *
11478000 AGCACGCAG-GGGGGAACGAG-CCGATCTCCAGCTTGCACATTCTACCTCTCCGGCTGGCTGAAC
65 AGCACGCAGAGGGGGAACG-GTCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCT-AAC
* * *
11478063 TCCCGCACGCCCATTTCGTGGGTTGGCTTAG
128 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * *
11478094 GGATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CCGGACCGAGGGTTGTGGCAGC-GGTATCG
1 GCATACGAAGTTCATTCCCA-GTCTAAGATC-AGACCGGATCGAGGGTTGCGGCAGCAGG-ATTG
* * * * * *
11478156 ATAGCACGCAGAGCGGGATCGGTCCGATCCCCGGCTTGCGCATTATGCCTTTTCGACTGGCTCAA
63 ACAGCACGCAGAGGGGGAACGGTCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCT-AA
* * * *
11478221 CGCCCGCACGCTCGTTCCGTGGGTTGACTTAT
127 CACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
11478253 GCACACGAAGTTCATTCCCAATCTAAGATCAGACCGGATGGAGGGTTACGGTAGCAGGATTGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATTGACA
* * *
11478318 GCACGCA-AGGGGGGACCAGGT-CGATCCCCGGCTTGTGCATTCTGCCTCTCCGA-TCGACTAAG
66 GCACGCAGA-GGGGGAAC-GGTCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACT-GGCTAA-
*
11478380 CACCCGCACTCTCGTTTCGTGGGTTTGGCTTAG
127 CACCCGCACGCTCGTTTCGTGGG-TTGGCTTAG
*
11478413 GCATACGAAGTTCATTCCTAGTCTAAGAT
1 GCATACGAAGTTCATTCCCAGTCTAAGAT
11478442 TTTGAGCCAC
Statistics
Matches: 277, Mismatches: 57, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
157 5 0.02
158 57 0.21
159 174 0.63
160 41 0.15
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATTGACA
GCACGCAGAGGGGGAACGGTCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTAACACC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:11479423 original size:158 final size:165
Alignment explanation
Indices: 11479036--11479599 Score: 428
Period size: 158 Copynumber: 3.5 Consensus size: 165
11479026 CACCCGTTCG
* * * * * * * *
11479036 ATCCCCGGCTTACGCATCCTGCCTCTCCGGTCGGCTGAGCG-CCAGCACGCCCGTTTCATGGGTT
1 ATCCTCGGCTTGCGCATTCTGCATCTCCGGCCGACTGAGCGTCC-GCACGCTCGTTTCGTGGGTT
* * * ** * * *
11479100 GGCTTAGGCATAGGGGGTTCATT-CCATGTCTAAGCCCCA-ACCGGACC-AAGG-GT-TG-TGGT
65 GGCTTAGGCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGACCAGACCGAAGGTGTGAGCAGGT
* * * * * * *
11479159 -A--ACGGGACCGACAGCACGGAAAGGGGGATCGAGCCG
128 CAGCACAGGATCGACAGCAC-GCAGGGGGGACCGGGCCA
* * * * * * * * * * *
11479195 ATCCCCAGCTTACGCATTATGCCTATCCGGCCGTCTCAGCGCCCGCACACTCGTTTTGTGGGTTG
1 ATCCTCGGCTTGCGCATTCTGCATCTCCGGCCGACTGAGCGTCCGCACGCTCGTTTCGTGGGTTG
* * * *
11479260 ACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGACTG-AGG-GT-TGC-GGT-AG
66 GCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTGTGAGCAGGTCAG
* *
11479320 CA-A-GATCGACAGCACGCAGGGGGTACCGGGCCG
131 CACAGGATCGACAGCACGCAGGGGGGACCGGGCCA
* *
11479353 ATCC-CTGGCTTGTGCATTCTGCATCTCCGGCCGACTGAGCGTCCGCATGCTCGTTTCGTGGGTT
1 ATCCTC-GGCTTGCGCATTCTGCATCTCCGGCCGACTGAGCGTCCGCACGCTCGTTTCGTGGGTT
* *
11479417 GGCTTAGGCATACGGAGTTCATTCCCAATTTAAGATCGGACCAGACCGAAGGTTGTGGCAGCAGG
65 GGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGG-TGT-G-AGCAGG
* *
11479482 TCCAGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCTA
127 T-CAGCA-CAGGATCGACAGCACGCAGGGGGGACCGGGCCA
* *** * *
11479523 ATCCTCGGCTTGCGCATTCTGCCTCTCCAATCGGCTGAGC-TCCCGTACGCTCGTTTCGTGGGTT
1 ATCCTCGGCTTGCGCATTCTGCATCTCCGGCCGACTGAGCGT-CCGCACGCTCGTTTCGTGGGTT
11479587 GGCTTAGGCATAC
65 GGCTTAGGCATAC
11479600 AAAGTTCGTA
Statistics
Matches: 326, Mismatches: 57, Indels: 33
0.78 0.14 0.08
Matches are distributed among these distances:
157 1 0.00
158 108 0.33
159 106 0.33
160 5 0.02
161 3 0.01
164 2 0.01
165 3 0.01
167 4 0.01
169 2 0.01
170 91 0.28
171 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (165 bp):
ATCCTCGGCTTGCGCATTCTGCATCTCCGGCCGACTGAGCGTCCGCACGCTCGTTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTGTGAGCAGGTCAG
CACAGGATCGACAGCACGCAGGGGGGACCGGGCCA
Found at i:11479636 original size:170 final size:169
Alignment explanation
Indices: 11479318--11479719 Score: 416
Period size: 170 Copynumber: 2.4 Consensus size: 169
11479308 GGGTTGCGGT
* * * * * * **
11479318 AGCAAGATCGACAGCACGCAGGGGGTACCGGGCCGATCCCTGGCTTGTGCATTCTGCATCTCCGG
1 AGCAGGATCGACAGCACGCAGGGGGGATCGGGCTGATCCC-GGCTTGCGCATTCTGCCTCTCCAA
* ** * *
11479383 CCGACTGAGCGTCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATTT
65 CCGACTGAGCGTCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAAAGTTCAGTACCAATTT
** * *
11479448 AAGATCGGACCAGACCGAAGGTTGTGGCAGCAGGTCCAGC
130 AAGATCCAACCAGACCGAAGGTTGTGGCAACAGGACCAGC
*
11479488 AGCAGGATCGACAGCACGCAGGGGGGATCGGGCTAATCCTCGGCTTGCGCATTCTGCCTCTCCAA
1 AGCAGGATCGACAGCACGCAGGGGGGATCGGGCTGATCC-CGGCTTGCGCATTCTGCCTCTCCAA
* * *
11479553 TCGGCTGAGC-TCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAAAGTTC-GTACC-ATG
65 CCGACTGAGCGT-CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAAAGTTCAGTACCAAT-
* * * **
11479615 TCTAAGCTCCAATCGGACCGAAGGTTGTGGCAACAGGACTGGC
128 T-TAAGATCCAACCAGACCGAAGGTTGTGGCAACAGGACCAGC
* * * * * *
11479658 AGCGGGATTGGCAGCATGC-GGAAGGGGATCGGGCTGATCCCCGACTTGCGCATTATGCCTCT
1 AGCAGGATCGACAGCACGCAGG--GGGGATCGGGCTGAT-CCCGGCTTGCGCATTCTGCCTCT
11479720 TCGGCCGGCC
Statistics
Matches: 192, Mismatches: 33, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
168 2 0.01
169 7 0.04
170 147 0.77
171 34 0.18
172 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.22
Consensus pattern (169 bp):
AGCAGGATCGACAGCACGCAGGGGGGATCGGGCTGATCCCGGCTTGCGCATTCTGCCTCTCCAAC
CGACTGAGCGTCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAAAGTTCAGTACCAATTTA
AGATCCAACCAGACCGAAGGTTGTGGCAACAGGACCAGC
Found at i:11479808 original size:26 final size:26
Alignment explanation
Indices: 11479778--11479830 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11479768 GTTGACTTAG
11479778 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
11479804 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11479830 G
1 G
11479831 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11480290 original size:158 final size:158
Alignment explanation
Indices: 11479949--11480305 Score: 370
Period size: 158 Copynumber: 2.3 Consensus size: 158
11479939 TCCCATTCCA
* *
11479949 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGTCCCAACCAGACCGAGGGTTGTGGC
1 TGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGT-CCAACCAGACCGAGGGTTGTGGC
* * * * *
11480014 AGCGGGACCGGCAGCACGCAGAGGGGGACTGGGTCGATCCTCAGCTTGCGCATTATGCCTCTTCG
65 AGCGAGACCGACAGCACGAAGAGGGGGACTGGGTCGATCCTCAGCTTACGCATTATGCCTCTCCG
* * **
11480079 GCTGACTCAACGCTCGCATGCTCATTTCG
130 ACCGACTCAACGCTCGCACACTCATTTCG
* * **
11480108 TTGG-TTGACTTATGCATGTGGAGTTCATTCCCA-GTCTAAGAT-CAGACCAGACCGAGGGTTGT
1 TGGGTTTG-CTTAGGCATACGGAGTTCATT-CCATGTCTAAG-TCCA-ACCAGACCGAGGGTTGT
* * * * *
11480170 GGTAGTC-AGATCGACAGCA-TAATAGGGGGACTGGGTCGATCC-CTAGCTTACGCATTCTGCCT
62 GGCAG-CGAGACCGACAGCACGAAGAGGGGGACTGGGTCGATCCTC-AGCTTACGCATTATGCCT
* * *
11480232 CTCCGACCGGCT-AAGCGC-CTGCACACTCGTTTTG
125 CTCCGACCGACTCAA-CGCTC-GCACACTCATTTCG
11480266 TGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 TGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
11480306 CATACGGAGT
Statistics
Matches: 162, Mismatches: 26, Indels: 21
0.78 0.12 0.10
Matches are distributed among these distances:
157 7 0.04
158 89 0.55
159 61 0.38
160 5 0.03
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (158 bp):
TGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGTCCAACCAGACCGAGGGTTGTGGCA
GCGAGACCGACAGCACGAAGAGGGGGACTGGGTCGATCCTCAGCTTACGCATTATGCCTCTCCGA
CCGACTCAACGCTCGCACACTCATTTCG
Found at i:11480315 original size:26 final size:26
Alignment explanation
Indices: 11480279--11480331 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11480269 GTTTGCTTAG
11480279 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11480305 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11480331 G
1 G
11480332 ATTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11483524 original size:26 final size:26
Alignment explanation
Indices: 11483494--11483546 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11483484 GTTGACTTAG
*
11483494 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
11483520 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
11483546 G
1 G
11483547 ATCGGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:11483827 original size:159 final size:159
Alignment explanation
Indices: 11483570--11484023 Score: 454
Period size: 159 Copynumber: 2.9 Consensus size: 159
11483560 AAGGGTTACG
* * * ** ** *
11483570 GCAGCAGGATCGGCAGCACGCAAGGGGGATTGGGCCAATCCCTGGCTTGCACATTCTGCCTC-TC
1 GCAGCAGGATCGACAGCACGTAGGGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTTC
* * * *
11483634 TGGTCGGCTGAGTGCCTGCACACTTGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATG
66 -GGTCGGCTAAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATG
* * * **
11483699 TCTAAGCCCCAG-CCAGATC-GAGGGTTGTG
130 TCTAAGCACCAGACC-GAACTGAGAGTTGCA
* * * * *
11483728 GCAGCGGGA-CTGACAGCACGTAGAGGGGGACGGGGCTGATCCCCGGCTTGTGCATTATGCCTCT
1 GCAGCAGGATC-GACAGCACGTAG-GGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCT
* * * ** ** * *
11483792 TCGGTCAGCTCAGCGCCCGCACACTCATTTCATGGGTTTACTTTTGCATACGAAGTTCATTCCCA
64 TCGGTCGGCTAAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATT-CCA
* *
11483857 -GTCTAAG-ATCAGATCGAACTGAGAGTTGCA
128 TGTCTAAGCACCAGACCGAACTGAGAGTTGCA
* *
11483887 GCAGCAGGATCGATAGCACGTAGGGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCC
1 GCAGCAGGATCGACAGCACGTAGGGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTTC
* ** *
11483952 GGTCGGCTAAGCGCCCGTATGCTCGTTTCGTGGGTTGGCTTAGGCATACA-GAGTTCATTCCATG
66 GGTCGGCTAAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATA-AGGAGTTCATTCCATG
11484016 TCTAAGCA
130 TCTAAGCA
11484024 TACGGAGTTC
Statistics
Matches: 235, Mismatches: 51, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
157 4 0.02
158 112 0.48
159 113 0.48
160 6 0.03
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
GCAGCAGGATCGACAGCACGTAGGGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTTC
GGTCGGCTAAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGT
CTAAGCACCAGACCGAACTGAGAGTTGCA
Found at i:11483986 original size:158 final size:157
Alignment explanation
Indices: 11483520--11484021 Score: 483
Period size: 158 Copynumber: 3.2 Consensus size: 157
11483510 CCCAGTCTAA
* * * * * *
11483520 GCATATGAAGTTCATTCCCA-GTCTAAGATCGGACCAAACCAAGGGTTACGGCAGCAGGATCGGC
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAGACCGAA-CGAGGGTTGCGGCAGCAGGATCGAC
* * ** ** * * * *
11483584 AGCACGCAAGGGGGATTGGGCCAATCCCTGGCTTGCACATTCTGCCTCTCTGGTCGGCTGAGTGC
64 AGCACGTAGGGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGC
* *
11483649 CTGCACACTTGTTTCATGGGTTGGCTTAG
129 CCGCACACTCGTTTCATGGGTTGGCTTAG
* * ** * * *
11483678 GCATAAGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGATCGAGGGTTGTGGCAGCGGGA-CTGA
1 GCATACGAAGTTCATTCCATGTCTAAG-ATCAGACC-GAACGAGGGTTGCGGCAGCAGGATC-GA
* * * * * * *
11483741 CAGCACGTAGAGGGGGACGGGGCTGATCCCCGGCTTGTGCATTATGCCTCTTCGGTCAGCTCAGC
63 CAGCACGTAG-GGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGC
* ** **
11483806 GCCCGCACACTCATTTCATGGGTTTACTTTT
127 GCCCGCACACTCGTTTCATGGGTTGGCTTAG
* * * *
11483837 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGATCGAACTGAGAGTTGCAGCAGCAGGATCGAT
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAGACCGAAC-GAGGGTTGCGGCAGCAGGATCGAC
11483901 AGCACGTAGGGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGC
64 AGCACGTAGGGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGC
* ** *
11483966 CCGTATGCTCGTTTCGTGGGTTGGCTTAG
129 CCGCACACTCGTTTCATGGGTTGGCTTAG
11483995 GCATAC-AGAGTTCATTCCATGTCTAAG
1 GCATACGA-AGTTCATTCCATGTCTAAG
11484022 CATACGGAGT
Statistics
Matches: 272, Mismatches: 61, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
157 8 0.03
158 144 0.53
159 116 0.43
160 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCAGACCGAACGAGGGTTGCGGCAGCAGGATCGACAG
CACGTAGGGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCCC
GCACACTCGTTTCATGGGTTGGCTTAG
Found at i:11484031 original size:26 final size:26
Alignment explanation
Indices: 11483995--11484047 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11483985 GTTGGCTTAG
11483995 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
11484021 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11484047 G
1 G
11484048 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11486356 original size:26 final size:26
Alignment explanation
Indices: 11486320--11486372 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11486310 GTTGGCTTAG
11486320 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11486346 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11486372 G
1 G
11486373 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11487079 original size:26 final size:26
Alignment explanation
Indices: 11487049--11487101 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11487039 GCTGACTTAG
*
11487049 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
11487075 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11487101 G
1 G
11487102 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11487552 original size:26 final size:26
Alignment explanation
Indices: 11487523--11487575 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11487513 GTTGGCTTAG
*
11487523 GCATACAGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
11487549 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11487575 G
1 G
11487576 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11487755 original size:26 final size:26
Alignment explanation
Indices: 11487718--11487769 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11487708 GTTGACTTAG
11487718 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
11487744 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11487770 AATCAAATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11489726 original size:26 final size:26
Alignment explanation
Indices: 11489697--11489749 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11489687 GTTGGCTTAG
11489697 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
11489723 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11489749 G
1 G
11489750 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11491305 original size:159 final size:158
Alignment explanation
Indices: 11491081--11491443 Score: 376
Period size: 158 Copynumber: 2.3 Consensus size: 158
11491071 CGCCCGCCTG
* * * * *
11491081 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCGGACCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATA-CGAGTTCATTCCCATGTCTAAGCACCAGCCAGACCGACGGT
* * * * * *
11491145 TGTGGCAGCGGGACCGACAGCATGCAGAGGGGGACCGGGT-GGATCCCCGACTTACGGATTATGC
65 TGTGGCAACAGGACCGACAGCACGCA-AAGGGGACCGGGTCGG-TCCCCGACTTACGCATTATAC
* * *
11491209 CTCTCCGGCCAGTTCAGTGCCCGAAAGCTCA
128 CTCTCCGACCAGCTCAGTGCCCGAAACCTCA
* * * *
11491240 TTTCGTGGGTTGACATAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACTGACGG
1 TTTCGTGGGTTGGCTTAGGCATAC-GAGTTCATTCCCATGTCTAAGCACCAG-CCAGACCGACGG
* * * *
11491303 TTGTGGCAACAGGATCTACAGCACGCAAAGGGGACCGGGTCGGTCCCCGGCTTACGCATTTTACC
64 TTGTGGCAACAGGACCGACAGCACGCAAAGGGGACCGGGTCGGTCCCCGACTTACGCATTATACC
* * * * * *
11491368 TCTCTGACCGGCTGAGTGCCCGTACCCTCG
129 TCTCCGACCAGCTCAGTGCCCGAAACCTCA
* *
11491398 TTTCGTGGGTTGGCTTAGGCATACGGGTTCATT-CAATGTCTAAGCA
1 TTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCCATGTCTAAGCA
11491444 TACGGAGTTC
Statistics
Matches: 166, Mismatches: 32, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
156 2 0.01
157 15 0.09
158 77 0.46
159 69 0.42
160 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
TTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCCATGTCTAAGCACCAGCCAGACCGACGGTT
GTGGCAACAGGACCGACAGCACGCAAAGGGGACCGGGTCGGTCCCCGACTTACGCATTATACCTC
TCCGACCAGCTCAGTGCCCGAAACCTCA
Found at i:11491417 original size:158 final size:159
Alignment explanation
Indices: 11491034--11491443 Score: 420
Period size: 159 Copynumber: 2.6 Consensus size: 159
11491024 CCGATACCCA
* **
11491034 GCTTACGCATTCTACCTCTTCCGGCCGGCTGAGTGCCCGCCCGCCT-GTTTCGTGGGTTGGCTTA
1 GCTTACGCATTATACCTC-TCCGGCCGGCTGAGTGCCCGAAC-CCTCGTTTCGTGGGTTGGCTTA
* * * * * * *
11491098 GGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGA
64 GGCATA-CGAGTTCATTCCCATGTCTAAGCACCAGCCAGACCGACGGTTGTGGCAACAGGACCGA
* *
11491162 CAGCATGCAGAGGGGGACCGGGTGGATCCCCG
128 CAGCACGCAGAAGGGGACCGGGTGGATCCCCG
* * * * * * ** * * *
11491194 ACTTACGGATTATGCCTCTCCGGCCAGTTCAGTGCCCGAAAGCTCATTTCGTGGGTTGACATAGG
1 GCTTACGCATTATACCTCTCCGGCCGGCTGAGTGCCCGAACCCTCGTTTCGTGGGTTGGCTTAGG
* * * *
11491259 CATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACTGACGGTTGTGGCAACAGGATCTAC
66 CATAC-GAGTTCATTCCCATGTCTAAGCACCAG-CCAGACCGACGGTTGTGGCAACAGGACCGAC
11491322 AGCACGCA-AAGGGGACCGGGTCGG-TCCCCG
129 AGCACGCAGAAGGGGACCGGGT-GGATCCCCG
* * * *
11491352 GCTTACGCATTTTACCTCTCTGACCGGCTGAGTGCCCGTACCCTCGTTTCGTGGGTTGGCTTAGG
1 GCTTACGCATTATACCTCTCCGGCCGGCTGAGTGCCCGAACCCTCGTTTCGTGGGTTGGCTTAGG
* *
11491417 CATACGGGTTCATT-CAATGTCTAAGCA
66 CATACGAGTTCATTCCCATGTCTAAGCA
11491444 TACGGAGTTC
Statistics
Matches: 199, Mismatches: 44, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
156 2 0.01
157 15 0.08
158 79 0.40
159 86 0.43
160 17 0.09
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
GCTTACGCATTATACCTCTCCGGCCGGCTGAGTGCCCGAACCCTCGTTTCGTGGGTTGGCTTAGG
CATACGAGTTCATTCCCATGTCTAAGCACCAGCCAGACCGACGGTTGTGGCAACAGGACCGACAG
CACGCAGAAGGGGACCGGGTGGATCCCCG
Found at i:11491638 original size:513 final size:508
Alignment explanation
Indices: 11490532--11491639 Score: 1382
Period size: 511 Copynumber: 2.2 Consensus size: 508
11490522 GATCGGGCCG
*
11490532 ATTCTGCCTCTTCGG-TCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGA
1 ATTCTGCCTCTTCGGCTAG-CTGAGCGCCCGCACG-CCGTTTCGTGGGTTGGCTTAGGCATAGG-
*
11490596 AGTTCATTCCATGTCTGAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCATGCAG
63 AGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCATGCAG
* * * * *
11490661 AGGCGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACTGACTCAGCGCCCGTACGC
128 AGGCGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACAGACTCAGCGCCCGAAAGC
* * * *
11490726 CTAATTTCGTGGTTGACTTAGGCATACAGAGTTCATTCCCATCTAAGATCGGACCGGACCGATGG
193 CTAATTTCGTGGTTGACATAGGCATACAGAGTTCATTCCCATCTAAGATCAGACCAGACCGACGG
** * ** * * ***
11490791 TTGCGACAGTAGGATCGACAGCACATAGGGGGGATGGGCCGGTCCCCAACGTGCGCATTTTGTGT
258 TTGCGACAACAGGATCGACAGCACACAAAGGGGACGGGCCGGTCCCCAACGTACGCATTTTACCT
* * *
11490856 CTCCGACTGGCTAAGCGCCCGTACTCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCT
323 CTCCGACCGGCTAAGCGCCCGTACCCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCA
* * * * *
11490921 ATGTCTAAGCATATGGAGTTCATTCCAGCCTAAGATCAGATCAGATCGAGGGTTGCGGCAGTAGG
388 ATGTCTAAGCATACGGAGTTCATTCCAGCCTAAGATCAGACCAGATCGAGGCTTGCGACAGCAGG
* * * *
11490986 ACCAGTAGTAGGATCGACAGCACGCGGGGTGGACTGGGCCGATACCCAGCTTACGC
453 ACCAGCAGCAGGATCGACAGCACACGGGGTGGACCGGGCCGATACCCAGCTTACGC
* ** * *
11491042 ATTCTACCTCTTCCGGCCGGCTGAGTGCCCGCCCGCCTGTTTCGTGGGTTGGCTTAGGCATAGGG
1 ATTCTGCCTCTT-CGGCTAGCTGAGCGCCCGCACGCC-GTTTCGTGGGTTGGCTTAGGCATA-GG
11491107 AGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCATGCAG
63 AGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCATGCAG
* ** * * * *
11491172 AGGGGGACCGGGTGGATCCCCGACTTACGGATTATGCCTCTCCGGCCAG-TTCAGTGCCCGAAAG
128 AGGCGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCC-GACAGACTCAGCGCCCGAAAG
* *
11491236 -CTCATTTCGTGGGTTGACATAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGA
192 CCTAATTTCGT-GGTTGACATAGGCATACAGAGTTCATTCCCA-TCTAAGATCAGACCAGACCGA
* * * * * ** *
11491300 CGGTTGTGGCAACAGGATCTACAGCACGCAAAGGGGACCGGGTCGGTCCCCGGCTTACGCATTTT
255 CGGTTGCGACAACAGGATCGACAGCACACAAAGGGGA-CGGGCCGGTCCCCAACGTACGCATTTT
* * * *
11491365 ACCTCTCTGACCGGCTGAGTGCCCGTACCCTCGTTTCGTGGGTTGGCTTAGGCATACGG-GTTCA
319 ACCTCTCCGACCGGCTAAGCGCCCGTACCCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCA
* * *
11491429 TTCAATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGCTTGCGATA
384 TTCAATGTCTAAGCATACGGAGTTCATT-CCAGCCTAAGATCAGACCAGATCGAGGCTTGCGACA
* ** * * *
11491494 GCCGGACCAGCAGCAGGATCGGTAGCATACAGAGGG-GGACCGGGCCGATCCCCGGCTTACGC
448 GCAGGACCAGCAGCAGGATCGACAGCACAC-G-GGGTGGACCGGGCCGATACCCAGCTTACGC
* * *
11491556 ATTCTGCCTCTTTGGCTAGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
1 ATTCTGCCTCTTCGGCTAGCTGAGCGCCCGCACGC-CGTTTCGTGGGTTGGCTTAGGCATA-GGA
*
11491621 GTTCA-TCCCTAGTCTAAGC
64 GTTCATTCCAT-GTCTAAGC
11491640 ATACGAAGTT
Statistics
Matches: 508, Mismatches: 77, Indels: 23
0.84 0.13 0.04
Matches are distributed among these distances:
510 22 0.04
511 182 0.36
512 86 0.17
513 179 0.35
514 36 0.07
515 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (508 bp):
ATTCTGCCTCTTCGGCTAGCTGAGCGCCCGCACGCCGTTTCGTGGGTTGGCTTAGGCATAGGAGT
TCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCATGCAGAGG
CGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACAGACTCAGCGCCCGAAAGCCTA
ATTTCGTGGTTGACATAGGCATACAGAGTTCATTCCCATCTAAGATCAGACCAGACCGACGGTTG
CGACAACAGGATCGACAGCACACAAAGGGGACGGGCCGGTCCCCAACGTACGCATTTTACCTCTC
CGACCGGCTAAGCGCCCGTACCCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCAATG
TCTAAGCATACGGAGTTCATTCCAGCCTAAGATCAGACCAGATCGAGGCTTGCGACAGCAGGACC
AGCAGCAGGATCGACAGCACACGGGGTGGACCGGGCCGATACCCAGCTTACGC
Found at i:11491662 original size:26 final size:26
Alignment explanation
Indices: 11491612--11491664 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11491602 GTTGACTTAG
* *
11491612 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAATCTAA
11491638 GCATACGAAGTTCATTCCC-AATCTAA
1 GCATACGAAGTTCA-TCCCTAATCTAA
11491664 G
1 G
11491665 ATCGAACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAATCTAA
Found at i:11492068 original size:26 final size:26
Alignment explanation
Indices: 11492032--11492082 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
11492022 ACGCAGGGGG
* *
11492032 CATACGGAGTTTA-TCCCTAGTCTAAA
1 CATACAGAGTTCATTCCC-AGTCTAAA
11492058 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
11492083 GATCGAACCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAA
Found at i:11492362 original size:137 final size:138
Alignment explanation
Indices: 11492130--11492379 Score: 369
Period size: 137 Copynumber: 1.8 Consensus size: 138
11492120 TAACACAAAG
* * * * * **
11492130 GGGGGACCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGTAGGCC
1 GGGGGACCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAACGCCCGCACACC
11492195 CATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTATAAGCCCCAATCGGATCGACAG
66 CATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTATAAGCCCCAATCGGATCGACAG
11492260 CACGCAGA
131 CACGCAGA
*
11492268 GGGGGACCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCC-TTC-GTCTGAACGCCCGCACAC
1 GGGGGACCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGT-TGAACGCCCGCACAC
* * * *
11492331 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 CCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTATAAGC
11492380 ATACAGAGTT
Statistics
Matches: 99, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
136 2 0.02
137 58 0.59
138 39 0.39
ACGTcount: A:0.18, C:0.30, G:0.28, T:0.24
Consensus pattern (138 bp):
GGGGGACCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAACGCCCGCACACC
CATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTATAAGCCCCAATCGGATCGACAG
CACGCAGA
Found at i:11492382 original size:26 final size:26
Alignment explanation
Indices: 11492352--11492404 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11492342 GTTGGCTTAG
* *
11492352 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
*
11492378 GCATACAGAGTTCATTTCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
11492404 G
1 G
11492405 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:11493112 original size:26 final size:26
Alignment explanation
Indices: 11493075--11493126 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11493065 TGACTTAGGA
11493075 CATACGATGTTCATCCCCAGTCTAAG
1 CATACGATGTTCATCCCCAGTCTAAG
*
11493101 CATACGGA-GTTCATTCCCAGTCTAAG
1 CATAC-GATGTTCATCCCCAGTCTAAG
11493127 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACGATGTTCATCCCCAGTCTAAG
Found at i:11493611 original size:26 final size:26
Alignment explanation
Indices: 11493562--11493614 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11493552 GTTGGCTTAG
*
11493562 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
11493588 GCATACGGAGTTCATTCC-TAGTCTAA
1 GCATACGGAGTTCATTCCAT-GTCTAA
11493614 G
1 G
11493615 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:11493971 original size:26 final size:26
Alignment explanation
Indices: 11493941--11493993 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11493931 GTTGACTTAG
11493941 GCATACGGAGTTCA-TCCGCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
*
11493967 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11493993 G
1 G
11493994 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11494172 original size:26 final size:25
Alignment explanation
Indices: 11494125--11494176 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
11494115 GTTGACTTAG
*
11494125 GCATACGAGTTCATCCGTAGTCTAA
1 GCATACGAGTTCATCCGCAGTCTAA
11494150 GCATACGGAGTTCATTCC-CAGTCTAA
1 GCATAC-GAGTTCA-TCCGCAGTCTAA
11494176 G
1 G
11494177 ATGGAACCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 6 0.25
26 15 0.62
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGAGTTCATCCGCAGTCTAA
Found at i:11494197 original size:183 final size:183
Alignment explanation
Indices: 11493850--11494246 Score: 534
Period size: 183 Copynumber: 2.2 Consensus size: 183
11493840 ATTGGTAGCG
* * * * * *
11493850 CGCAGAGGGGGACCGGGTTGATCCTCGGCTTGCGCATTATGCCTTTCCGATCGGTTGAGCGGCCG
1 CGCAGA-GGGGA-CGGGTCGATCCCCGGCTTGCACATTATGCCTCTCCGATCGGTTGAACGCCCG
* *
11493915 TACGCTCATTTCATTGGTTGACTTAGGCATACGGAGTTCATCCGCAGTCTAAGCATACGGAGTTT
64 TACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCGCAGTCTAAGCATACGGAGTTC
*
11493980 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCA
129 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCAGCAGCA
* * *
11494035 CGCAGAGGGGATCGGGTCGATCCCCGGCTTGTACATTCTGCCTCTCCGGTCGGTTGAACGCCCGC
1 CGCAGAGGGGA-CGGGTCGATCCCCGGCTTGCACATTATGCCTCTCCGATCGGTTGAACGCCCG-
*
11494100 T-CGCTCATTTCATGGGTTGACTTAGGCATAC-GAGTTCATCCGTAGTCTAAGCATACGGAGTTC
64 TACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCGCAGTCTAAGCATACGGAGTTC
* * *
11494163 ATTCCCAGTCTAAGAT-GGAACC-GAATCTAGGGTTGCGGTAGCAGGATCAGCAGCA
129 ATTCCCAGTCTAAGATCAG-ACCAG-ACCGAGGGTTGCGGTAGCAGGATCAGCAGCA
* *
11494218 CGCAG-GGGGACTGGGCCGATCCCTGGCTT
1 CGCAGAGGGGAC-GGGTCGATCCCCGGCTT
11494247 ACGCGTTCTA
Statistics
Matches: 189, Mismatches: 19, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
181 1 0.01
182 22 0.12
183 82 0.43
184 77 0.41
185 7 0.04
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (183 bp):
CGCAGAGGGGACGGGTCGATCCCCGGCTTGCACATTATGCCTCTCCGATCGGTTGAACGCCCGTA
CGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCGCAGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCAGCAGCA
Found at i:11494320 original size:183 final size:184
Alignment explanation
Indices: 11493921--11494334 Score: 482
Period size: 183 Copynumber: 2.3 Consensus size: 184
11493911 GCCGTACGCT
* * * *
11493921 CATTTCATTGGTTGACTTAGGCATACGGAGTTCATCCGCAGTCTAAGCATACGGAGTTTATTCCC
1 CATTTCATGGGTTGACTTAGGCATAAGGAGTTCATCCGTAGTCTAAGCATACGGAGTTCATTCCC
*
11493986 AGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGATCGGG
66 AGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCAGCAGCACGCAGAGGGGATCGGG
* ** * * * * *
11494051 TCGATCCCCGGCTTGTACATTCTGCCTCTCCGGTCGGTTGAACGCCCGCTCGCT
131 CCGATCCCCGGCTTACACATTCTACCTCTCCAGCCCGTTGAACGCCCGCTCGCC
*
11494105 CATTTCATGGGTTGACTTAGGCAT-ACGAGTTCATCCGTAGTCTAAGCATACGGAGTTCATTCCC
1 CATTTCATGGGTTGACTTAGGCATAAGGAGTTCATCCGTAGTCTAAGCATACGGAGTTCATTCCC
* * *
11494169 AGTCTAAGAT-GGAACC-GAATCTAGGGTTGCGGTAGCAGGATCAGCAGCACGCAG-GGGGA-CT
66 AGTCTAAGATCAG-ACCAG-ACCGAGGGTTGCGGTAGCAGGATCAGCAGCACGCAGAGGGGATC-
* * * * ***
11494230 GGGCCGATCCCTGGCTTACGCGTTCTACCTCTCCAGCCCGTTGAGCTTTCGCAT-GCC
128 GGGCCGATCCCCGGCTTACACATTCTACCTCTCCAGCCCGTTGAACGCCCGC-TCGCC
* * * *
11494287 CGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCAT-GTCTAAGC
1 CATTTCATGGGTTGACTTAGGCATAAGGAGTTCA-TCCGTAGTCTAAGC
11494335 CCCAACCAGA
Statistics
Matches: 195, Mismatches: 29, Indels: 13
0.82 0.12 0.05
Matches are distributed among these distances:
181 1 0.01
182 68 0.35
183 99 0.51
184 27 0.14
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.25
Consensus pattern (184 bp):
CATTTCATGGGTTGACTTAGGCATAAGGAGTTCATCCGTAGTCTAAGCATACGGAGTTCATTCCC
AGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCAGCAGCACGCAGAGGGGATCGGG
CCGATCCCCGGCTTACACATTCTACCTCTCCAGCCCGTTGAACGCCCGCTCGCC
Found at i:11494810 original size:26 final size:26
Alignment explanation
Indices: 11494781--11494832 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11494771 GTTGGCTTAG
11494781 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATAGGGAGTTCATTCCCA-GTCTAA
*
11494807 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
11494833 TATCAGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCCAGTCTAA
Found at i:11494995 original size:191 final size:184
Alignment explanation
Indices: 11494554--11494999 Score: 511
Period size: 184 Copynumber: 2.4 Consensus size: 184
11494544 GTTGGGCTCT
* * * ** * *
11494554 GGTCTGCTGAGCGTCCGTATGCTCATTTCGTGGGTTAACGTAGGCATACGGAGTTCATCCCCA-G
1 GGTCGGCTGAGCGCCCGTATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATG
* * * *
11494618 TCTAAGCATATAGAGTTCATTATCAGTCTAAGATCAGACTAGATCGAGGGTTGCTGCAGTAGGAT
65 TCTAAGCATATAGAGTTCATTACCAGTCTAAGATCAGACCAGACCGAGGGTTGCTGCAGTAGGAC
* *
11494683 CAGTAGCACGTAGGGGGGATCAGGTCGATCCTCAGCTTGCGCATTCTGCCTCTTC
130 CAGCAGCACGTAGGGGGGATCAGGTCGATCCTCAGCTTGCGCATTCTACCTCTTC
* * * * *
11494738 GATCGACTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
1 GGTCGGCTGAGCGCCCGTATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * * *
11494803 CTAAGCATATGGAGTTCATTCCCAGTCTAATATCAGACCGGACCGAGGGTTGC-GACAGTAGGAC
66 CTAAGCATATAGAGTTCATTACCAGTCTAAGATCAGACCAGACCGAGGGTTGCTG-CAGTAGGAC
* ** * *
11494867 CAGCAGGATCGGTAGCATGCAGGGGGATTGGGTCGATCC-CAGCTTGTGCATTCTACCTTTTC
130 CAGCAGCA-C-GT---A-G--GGGGGATCAGGTCGATCCTCAGCTTGCGCATTCTACCTCTTC
* * *
11494929 GGTCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTTGGCATACGGAGTTCATTCCATGT
1 GGTCGGCTGAGCGCCCGTATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
11494994 CTAAGC
66 CTAAGC
11495000 CCTAGCCGTA
Statistics
Matches: 217, Mismatches: 35, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
183 4 0.02
184 109 0.50
185 1 0.00
186 2 0.01
189 1 0.00
190 1 0.00
191 83 0.38
192 16 0.07
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (184 bp):
GGTCGGCTGAGCGCCCGTATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGCATATAGAGTTCATTACCAGTCTAAGATCAGACCAGACCGAGGGTTGCTGCAGTAGGACC
AGCAGCACGTAGGGGGGATCAGGTCGATCCTCAGCTTGCGCATTCTACCTCTTC
Found at i:11495192 original size:26 final size:26
Alignment explanation
Indices: 11495156--11495234 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
11495146 GTTGACTTAG
11495156 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11495182 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
11495208 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11495234 G
1 G
11495235 ATCAGACTGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11495928 original size:26 final size:26
Alignment explanation
Indices: 11495892--11495944 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11495882 ATTGACTTAG
*
11495892 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
11495918 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11495944 G
1 G
11495945 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11496270 original size:26 final size:26
Alignment explanation
Indices: 11496234--11496286 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11496224 GTTGGCTTAG
11496234 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11496260 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11496286 G
1 G
11496287 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11497334 original size:26 final size:26
Alignment explanation
Indices: 11497298--11497350 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11497288 GTTGGCTTAG
*
11497298 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACCGAGTTCATTCCCA-GTCTAA
11497324 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
11497350 G
1 G
11497351 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:11498505 original size:158 final size:157
Alignment explanation
Indices: 11498091--11498524 Score: 442
Period size: 159 Copynumber: 2.7 Consensus size: 157
11498081 CTGAGGGTTG
* * * * *
11498091 CGACCGCACGCAGGGGGTACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGA
1 CGACAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGA
* * *
11498156 GCGCCCGTACGCCCATTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCAAGTCTAAACCCCA
66 GCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATAGG-AGTTCATTCCAAGCCTAAACCCCA
* * * ** *
11498221 GTCGGACTGAGGGTTGTGGTAGTGGTAC
130 GCCAGACTGAGGGTTGCGACAGAGGTAC
* * * * * *
11498249 CGACAGCACGCGGAGGGGGATCGGGCAGATCCCCGACTTGCGCATTATGCCTCTCC-AGCCAGCT
1 CGACAGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-TCGGCT
* * * *
11498313 CAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGA-T
64 GAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATA-GGAGTTCATTCCAAGCCTAA-ACC
*** *
11498377 TGGGCCAGACTGAGGGTTGCGACAGCAGG-AT
127 CCAGCCAGACTGAGGGTTGCGACAG-AGGTAC
** * * * *
11498408 TTACAGCACGTAGGGGGGATCGGGCCGGTCCCAGGCTTGTGCATTCTGCCTCTCCGATCGGCTGA
1 CGACAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGA
* * * *
11498473 GCACCTGCACGCTCATTTCATGGGTTGGCTTAGGCATATGAAGTTCATTCCA
66 GCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATA-GGAGTTCATTCCA
11498525 TGTCTAAGCA
Statistics
Matches: 222, Mismatches: 48, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
158 97 0.44
159 120 0.54
160 5 0.02
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.23
Consensus pattern (157 bp):
CGACAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGA
GCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATAGGAGTTCATTCCAAGCCTAAACCCCAG
CCAGACTGAGGGTTGCGACAGAGGTAC
Found at i:11498536 original size:26 final size:26
Alignment explanation
Indices: 11498506--11498558 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11498496 GTTGGCTTAG
*
11498506 GCATATGAAGTTCATTCCAT-GTCTAA
1 GCATACGAAGTTCATTCC-TGGTCTAA
*
11498532 GCATACGGAGTTCATTCCTGGTCTAA
1 GCATACGAAGTTCATTCCTGGTCTAA
11498558 G
1 G
11498559 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTGGTCTAA
Found at i:11499266 original size:26 final size:26
Alignment explanation
Indices: 11499236--11499288 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11499226 GTTGACTTAG
11499236 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
11499262 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11499288 G
1 G
11499289 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11499563 original size:159 final size:158
Alignment explanation
Indices: 11499326--11499765 Score: 526
Period size: 159 Copynumber: 2.8 Consensus size: 158
11499316 CAGGATTGAT
** *
11499326 AGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCAC
1 AGCACGCAGGGGGGACCGGGTCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCAC
* * * * * *
11499391 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGAATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACC
65 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCACCAGACC
** * * *
11499455 GGACCGAGGGTTGTGGTAGTAGGACCGGC
130 GGACCGAGGGTTGCAGCAGTAGGAACGAC
* * * *
11499484 AGCACGCAGAGGGGGACCGGGTCGATCCCAGACTTGCGCATTATGCCTCTCTGACCGGCTCAGCA
1 AGCACGCAG-GGGGGACCGGGTCGATCCC-GGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCA
* * * * *
11499549 ACCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTTATTCC-TAGTCTAAG-ATCAGA
64 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCAT-GTCTAAGCACCAGA
*
11499612 CCGGACTGAGGGTTGCAGCAGTAGGAACGAC
128 CCGGACCGAGGGTTGCAGCAGTAGGAACGAC
** * * * * * *
11499643 AGCACATAGGGGGGACCGAGCCGGTCCTCGGCTTGCGCTTTCTGCCTCTCCAACCGGCTGAGCGC
1 AGCACGCAGGGGGGACCGGGTCGATCC-CGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCAC
11499708 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCA
65 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCA
11499766 TATGCAGTTC
Statistics
Matches: 235, Mismatches: 40, Indels: 13
0.82 0.14 0.05
Matches are distributed among these distances:
158 109 0.46
159 126 0.54
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
AGCACGCAGGGGGGACCGGGTCGATCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCACCAGACCG
GACCGAGGGTTGCAGCAGTAGGAACGAC
Found at i:11499736 original size:158 final size:157
Alignment explanation
Indices: 11499269--11499763 Score: 539
Period size: 158 Copynumber: 3.1 Consensus size: 157
11499259 TAAGCATATA
* * * ** *
11499269 GAGTTCATTCCCA-GTCTAAGATCAGATCGGA-TCGAAGGTTGCGGTAGCAGGATTGATAGCACG
1 GAGTTCATT-CCATGTCTAAGATCAGACCGGACT-GAGGGTTGCGGTAGTAGGAACGACAGCACG
** *
11499332 CAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCACCCGCAC
64 CAGGGGGGACCGGGTCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCAC
* * * *
11499397 GCCCGTTTCGTGGGTTGGCTTAGGAATAGG
128 GCTCGTTTCATGGGTTGGCTTAGGCATACG
** * * * *
11499427 GAGTTCATTCCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGTAGTAGGACCGGCAGCACGC
1 GAGTTCATTCCATGTCTAAG-ATCAGACCGGACTGAGGGTTGCGGTAGTAGGAACGACAGCACGC
* * * * * *
11499491 AGAGGGGGACCGGGTCGATCCCAGACTTGCGCATTATGCCTCTCTGACCGGCTCAGCAACCGAAC
65 AG-GGGGGACCGGGTCGATCCC-GGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCAC
*
11499556 GCTCGTTTCATGGGTTGACTTAGGCATACG
128 GCTCGTTTCATGGGTTGGCTTAGGCATACG
* * * * **
11499586 AAGTTTATTCC-TAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGTAGGAACGACAGCACAT
1 GAGTTCATTCCAT-GTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGTAGGAACGACAGCACGC
* * * * * *
11499650 AGGGGGGACCGAGCCGGTCCTCGGCTTGCGCTTTCTGCCTCTCCAACCGGCTGAGCGCCCGCACG
65 AGGGGGGACCGGGTCGATCC-CGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACG
11499715 CTCGTTTCATGGGTTGGCTTAGGCATACG
129 CTCGTTTCATGGGTTGGCTTAGGCATACG
*
11499744 GAGTTTATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
11499764 CATATGCAGT
Statistics
Matches: 277, Mismatches: 51, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
157 3 0.01
158 147 0.53
159 127 0.46
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGTAGGAACGACAGCACGCA
GGGGGGACCGGGTCGATCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCT
CGTTTCATGGGTTGGCTTAGGCATACG
Found at i:11499766 original size:26 final size:26
Alignment explanation
Indices: 11499737--11499789 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
11499727 GTTGGCTTAG
* *
11499737 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGCAGTTCATTCCCA-GTCTAA
*
11499763 GCATATGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
11499789 G
1 G
11499790 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:11499985 original size:195 final size:187
Alignment explanation
Indices: 11499579--11500142 Score: 540
Period size: 195 Copynumber: 3.0 Consensus size: 187
11499569 GTTGACTTAG
* * * * * *
11499579 GCATACGAAGTTTATTCCTAGTCTAAGATC-AGACC-GGACTGAGGGTT--GCAGCAGTAGGAAC
1 GCATACGCAGTTCATTCCCAATCTAAGATCTA-ACCAGGACCGAGGGTTGCGCAGCAGTAGGATC
* * * * * * * * * * *
11499640 GACAGCACATAGGGGGGACCGAGCCGGTCCTCGGCTTGCGCTTTCTGCCTCTCCAACCGGCTGAG
65 GATAGCACGTAGGGGGGACTGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGATCGGCTGAG
* * * * *
11499705 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAA
130 CACCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAA
* * * **
11499763 GCATATGCAGTTCATTCCCAGTCTAAGAT-TGGACC-GGATTGAGGGTTGCGACAGTAGGACCAG
1 GCATACGCAGTTCATTCCCAATCTAAGATCT-AACCAGGACCGAGGGTT--G-C-----G--CAG
*
11499826 CAGCAGGATCGATAGCACGTA-GGGGGACTGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCG
55 CAGTAGGATCGATAGCACGTAGGGGGGACTGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCG
* * * *
11499890 GTCGGTTGAGCACCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATCTCCA-GT
120 ATCGGCTGAGCACCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACAGAGTTCAT-TCCATGT
11499954 CTAA
184 CTAA
* *
11499958 GCGTACGGAGTTCATTCCCAATCTAAGATCTAACCAGGACCGAGGGTTGCG--GCAGTAGGATCG
1 GCATACGCAGTTCATTCCCAATCTAAGATCTAACCAGGACCGAGGGTTGCGCAGCAGTAGGATCG
* ** * *
11500021 GTAGCACGTAGGGGGGA-TCGGATCGATCCCCAACTTACGCATTCTGCCTCTCCGATCGACTGAG
66 ATAGCACGTAGGGGGGACT-GGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGATCGGCTGAG
* *
11500085 CAACCGCACGCCCGTTTTATGGGTTGACTTAGGCATA-AGGAGTTCATTCCATGTCTAA
130 CACCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACA-GAGTTCATTCCATGTCTAA
11500143 ACCCCAGTCG
Statistics
Matches: 312, Mismatches: 47, Indels: 41
0.78 0.12 0.10
Matches are distributed among these distances:
184 65 0.21
185 92 0.29
188 1 0.00
193 1 0.00
194 2 0.01
195 116 0.37
196 35 0.11
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (187 bp):
GCATACGCAGTTCATTCCCAATCTAAGATCTAACCAGGACCGAGGGTTGCGCAGCAGTAGGATCG
ATAGCACGTAGGGGGGACTGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGATCGGCTGAGC
ACCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:11500833 original size:26 final size:26
Alignment explanation
Indices: 11500803--11500855 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11500793 GTTAACTTAG
11500803 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
11500829 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11500855 G
1 G
11500856 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11502061 original size:26 final size:26
Alignment explanation
Indices: 11502023--11502075 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11502013 CCGGTCCGAT
11502023 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11502049 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
11502075 C
1 C
11502076 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11502546 original size:26 final size:26
Alignment explanation
Indices: 11502505--11502557 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11502495 CCAGTCTAAT
11502505 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
11502531 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
11502557 C
1 C
11502558 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:11503061 original size:184 final size:185
Alignment explanation
Indices: 11502716--11503077 Score: 437
Period size: 184 Copynumber: 2.0 Consensus size: 185
11502706 TGGCTGGGGA
* * * *
11502716 TTAGACATGGAATGAACACCGTATGCCTAAGCTAACCCATGAAACGAGTGTGTGGGCGCTCAGCC
1 TTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * *
11502781 AACCGGAGAGGCAGAATACAGAAGCTAGTGATCGGCCTGGTCCTCCCCTGCATGCTATCGATCCT
66 AACCGGAGACGCAGAATACACAAGCGAGTGATCGGCCTAGTCCTCCCCTACATGCTATCGATCCT
* * * *
11502846 GCTGTCGCAACCCTCGATCCGGTCAGATCTTACACTGGAAATGAACTCCATATGC
131 ACTATCGCAACCCTCGATCCAGTCAGATCTTACACTAGAAATGAACTCCATATGC
* * * *
11502901 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTTAGTC
1 TTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * *
11502966 GATCGAGAGACG-A-AATGCACAAGCCGAG-GATCGGCCTAGTCC-CACCCTACGTGCTATCGAT
66 AACCG-GAGACGCAGAATACACAAG-CGAGTGATCGGCCTAGTCCTC-CCCTACATGCTATCGAT
* * *
11503027 CCTACTATCGCAACCCTC-ACTCTAGTCTGATCTTAGACTAGAAATGAACTC
128 CCTACTATCGCAACCCTCGA-TCCAGTCAGATCTTACACTAGAAATGAACTC
11503078 TGTATGCCTA
Statistics
Matches: 149, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
183 2 0.01
184 78 0.52
185 64 0.43
186 5 0.03
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.21
Consensus pattern (185 bp):
TTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
AACCGGAGACGCAGAATACACAAGCGAGTGATCGGCCTAGTCCTCCCCTACATGCTATCGATCCT
ACTATCGCAACCCTCGATCCAGTCAGATCTTACACTAGAAATGAACTCCATATGC
Found at i:11503359 original size:159 final size:157
Alignment explanation
Indices: 11502899--11503363 Score: 440
Period size: 159 Copynumber: 2.9 Consensus size: 157
11502889 AACTCCATAT
* *
11502899 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-TGAGCGTGCGGGCGCTTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAG-GCGTGCGGGCGCTTA
* * * * * *
11502963 GTCGATC-GAGAGAC-GAAATGCACAAGCCGAGGATCGGCCTAGTCCCACCCTACGTGCTATCGA
65 GTCGATCGGAGAGGCAG-AATGCGCAAGCCGAGGATCGACCGA-TCCC-CCCTGCGTGCTGTCGA
11503026 TCCTACTATCGCAACCCTC-ACTCTAGTCTGA
127 TCCTACTATCGCAACCCTCGACTCTAG-CTGA
* * * * * * *
11503057 TCTTAGAC-TAGAAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGTGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAGGCGTGCGGGCGCTTA
* * * * * *
11503121 GCCGATCGTAGAGGCATAATGTGCAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCCGTCGGT
65 GTCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCGATCCCCC-CTGCGTGCTGTCGAT
* * * *
11503186 CCCACTACCACAACCCTCGA-TCCTA-CTGGG
128 CCTACTATCGCAACCCTCGACT-CTAGCT-GA
* ** *
11503216 GCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCATAAAACAGGCGTGTGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAGGCGTGCGGGCGCTTAG
* * * * *
11503281 TCGGTCGGAGAGGCAGAATGCGTAAGCTGGGGATCGACTCGATTCCCCCCTGCGTGCTGCCGATC
66 TCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGAC-CGA-TCCCCCCTGCGTGCTGTCGATC
* * *
11503346 CTGCTGTTGCAACCCTCG
129 CTACTATCGCAACCCTCG
11503364 GTCCGGTTAG
Statistics
Matches: 242, Mismatches: 53, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
157 1 0.00
158 63 0.26
159 164 0.68
160 14 0.06
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAGGCGTGCGGGCGCTTAG
TCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCGATCCCCCCTGCGTGCTGTCGATCCT
ACTATCGCAACCCTCGACTCTAGCTGA
Found at i:11503721 original size:196 final size:196
Alignment explanation
Indices: 11503374--11503730 Score: 470
Period size: 196 Copynumber: 1.8 Consensus size: 196
11503364 GTCCGGTTAG
* * *
11503374 ATCTAAGACTGGGAATGAATTCTGTACGCTTAGACTGGAGATGAACTCTGTATGCCTAAGTCAAC
1 ATCTAAGACTGGGAATGAATTCTGTACGCTTAGACTGGAGATAAACTCCGTATGCCTAAGCCAAC
* * * * * *
11503439 CCACGAAACGAGCGTGTGGGTGCTCAGCTGACCGGAGAGGTAGAATGCATAAGCTGGGGATCGGC
66 CCACGAAACGAGCGTGCGGGCGCTCAGCTGACCGGAGAGGCAGAATGCACAAACTGGGGACCGGC
* * * *
11503504 CCAGTCCCTCCTGCGTGCTGTCGATCCTGCTACTGGTCCTGCTGTCACAACACTTGATCCGATCC
131 CCAGCCCCCCCTACATGCTGTCGATCCTGCTACTGGTCCTGCTGTCACAACACTTGATCCGATCC
11503569 A
196 A
* * *
11503570 ATCTTAGACTGGGAATGAGCTTC-GTATGCTTAGACATGGA-ATAAACTCCGTATGCCTAAGCCA
1 ATCTAAGACTGGGAATGA-ATTCTGTACGCTTAGAC-TGGAGATAAACTCCGTATGCCTAAGCCA
* * *
11503633 ACCCATGAAACGAGCGTGCGGGCGCTCAGCCTG-TCGGAGAGGCAGAATGCGCAAACTGGGGACC
64 ACCCACGAAACGAGCGTGCGGGCGCTCAG-CTGACCGGAGAGGCAGAATGCACAAACTGGGGACC
*
11503697 GGCCC-GACCCCCCCTACATGCTGTCGTTCCTGCT
128 GGCCCAG-CCCCCCCTACATGCTGTCGATCCTGCT
11503731 GCCGCAACCC
Statistics
Matches: 137, Mismatches: 20, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
195 1 0.01
196 126 0.92
197 10 0.07
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (196 bp):
ATCTAAGACTGGGAATGAATTCTGTACGCTTAGACTGGAGATAAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCTGACCGGAGAGGCAGAATGCACAAACTGGGGACCGGC
CCAGCCCCCCCTACATGCTGTCGATCCTGCTACTGGTCCTGCTGTCACAACACTTGATCCGATCC
A
Found at i:11503897 original size:158 final size:155
Alignment explanation
Indices: 11503598--11504097 Score: 497
Period size: 158 Copynumber: 3.2 Consensus size: 155
11503588 GCTTCGTATG
* * *
11503598 CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTACGGGTGCTCAGC
* * * * * * *
11503663 CTGTCGGAGAGGCAGAATGCGCAAACTGGGGACCGGCCCGACCCCCCCTACATGCTGTCGTTCCT
65 CGGTCGGAGAGGCAGAATGCGCAAGCT-GGGATCGACCCGA-TCCCCCTACGTGCTGTCGATCCT
* * *
11503728 GCTGCCGCAACCCTCGGTCCGATCCGAT
128 GCTACCGCAACCCTCGGTCCGGTCAGAT
* * * *
11503756 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGTTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTACGGGTGCTCAG
* * *
11503820 CCGGTCAGAGAGGCA-AATGCGCAAGTCTGGGATCGACCCGATCCCCCTTTACGTGCTGCCGGTC
64 CCGGTCGGAGAGGCAGAATGCGCAAG-CTGGGATCGACCCGATCCCCC--TACGTGCTGTCGATC
* * * **
11503884 CTACTACCACAACCCTCGGTCCGGTTAGGG
126 CTGCTACCGCAACCCTCGGTCCGGTCAGAT
* *
11503914 CTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCATGAAACG-GACGTACGGGTGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCATGAAACGAG-CGTACGGGTGCTCAG
** * * * * *
11503978 CCGACCGGAGAGGCAGAATGCGCAAGCTGAGGATC-AGTCCGGTCCCCCTGCGTGTTATCGATCC
64 CCGGTCGGAGAGGCAGAATGCGCAAGCTG-GGATCGA-CCCGATCCCCCTACGTGCTGTCGATCC
* * * * *
11504042 TGCTATCGCAACCTTCGATTCGGTCTGAT
127 TGCTACCGCAACCCTCGGTCCGGTCAGAT
11504071 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
11504098 TTAGACTAGG
Statistics
Matches: 280, Mismatches: 51, Indels: 23
0.79 0.14 0.06
Matches are distributed among these distances:
156 6 0.02
157 77 0.28
158 172 0.61
159 25 0.09
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCATGAAACGAGCGTACGGGTGCTCAGCC
GGTCGGAGAGGCAGAATGCGCAAGCTGGGATCGACCCGATCCCCCTACGTGCTGTCGATCCTGCT
ACCGCAACCCTCGGTCCGGTCAGAT
Found at i:11504112 original size:26 final size:26
Alignment explanation
Indices: 11504071--11504123 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11504061 TCGGTCTGAT
*
11504071 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11504097 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
11504123 C
1 C
11504124 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11505247 original size:159 final size:158
Alignment explanation
Indices: 11504819--11505261 Score: 485
Period size: 159 Copynumber: 2.8 Consensus size: 158
11504809 AACTCCATAT
* * * * *
11504819 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCACAAAATGAGCGTGCAGGTGCTCAG
1 GCTTAGACTTGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * *
11504884 CCGACCGGAAAGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCCTACGTGCTGTCAATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* * *
11504949 TGCTACCGCAACCCTCAGTCTGGCCCAA
131 CGCTACCACAACCCTCAGTCTGACCCAA
* * * * * * * *
11504977 TCTTAGGCTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATAAGCGTACGGGCGCTGAG
1 GCTTAGACTTGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * * * * *
11505042 CTGGCTGGAGAGGCATAATGCACAAGCCGAGGATCTG-TCCGATCCCCCTCTGTGTGTTGTCGAT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GACCCGATCCCCC-CTGCGTGCTGTCGAT
* * ****
11505106 CCCGCTGCCACAACCCTCGGT-TCGACTGGG
129 CCCGCTACCACAACCCTCAGTCT-GACCCAA
* ** *
11505136 GCTTAGACTTGGAATGAACCCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACTTGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
*
11505201 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCG
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCG
11505262 CAACCCTCAA
Statistics
Matches: 224, Mismatches: 57, Indels: 8
0.78 0.20 0.03
Matches are distributed among these distances:
158 102 0.46
159 122 0.54
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACTTGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
CGCTACCACAACCCTCAGTCTGACCCAA
Found at i:11505618 original size:14 final size:14
Alignment explanation
Indices: 11505583--11505622 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
11505573 CGAGATTTTT
*
11505583 AAAATTTTT-TTAG
1 AAAATTTTTGTTAC
11505596 AAAACTTTTTGTTAC
1 AAAA-TTTTTGTTAC
11505611 AAAATTTTTGTT
1 AAAATTTTTGTT
11505623 GGCATGCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 4 0.17
14 13 0.54
15 7 0.29
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.53
Consensus pattern (14 bp):
AAAATTTTTGTTAC
Found at i:11506375 original size:26 final size:26
Alignment explanation
Indices: 11506324--11506375 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11506314 CCAGTTCGAT
**
11506324 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11506350 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11506376 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11506584 original size:26 final size:26
Alignment explanation
Indices: 11506533--11506585 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11506523 CCGGTCTGAT
**
11506533 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11506559 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
11506585 C
1 C
11506586 CTAGGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11507071 original size:158 final size:155
Alignment explanation
Indices: 11506559--11507111 Score: 500
Period size: 158 Copynumber: 3.5 Consensus size: 155
11506549 ACTCTGTATG
* * * *
11506559 CTTAGACATGGAATGAACTCCATATGCCTAGGCCAACCCACGAAGCGAGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-GCGTGCGGGCGCTCAAC
* * * * ** * * * * *
11506624 C-AGCCGAAGAGGTAGATTGGGCAAGCTAGGGACCGGCCTGGTCCCCCCTATGTGCTGTCGATCC
65 CGA-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACC-GGTCCCCCCTGTGTGCTGCCCATCC
* *
11506688 TGCTATTGCAACCCTCGGTCCGAGCCAAT
128 TGCTATCGCAACCCTCGGTCCG-GCCGAT
* * * * * * * *
11506717 CTCAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAATC-GAGTGATCGGGCGTTGAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGCGTG--CGGGCGCTCAA
* * * ** * *
11506781 CCGACCGGAGAGGCATAATACGCAAGCCGGGGATCGACCCAGTCCTCTTCTGTGTGCTGGCTATC
64 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCGGTCC-CCCCTGTGTGCTGCCCATC
* * * * * **
11506846 CCGCTACCACAACCCTCGGTCCGACTGGGG
127 CTGCTATCGCAACCCTCGGTCCGGC-CGAT
* * * *
11506876 CTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GGCGTGCGGGCGCTCAAC
* * *
11506941 CGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACTCGGTCCCCCCTGTATACTGCCCATCCT
65 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGAC-CGGTCCCCCCTGTGTGCTGCCCATCCT
11507006 GCTATCGCAACCCTCGGTCCGGTCCGAT
129 GCTATCGCAACCCTCGGTCCGG-CCGAT
* * *
11507034 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GGCGTGCGGGCGCTCAA
* *
11507098 TCGGCCGGAGAGGC
64 CCGACCGGAGAGGC
11507112 TGGCCAGAGA
Statistics
Matches: 310, Mismatches: 74, Indels: 22
0.76 0.18 0.05
Matches are distributed among these distances:
156 4 0.01
157 1 0.00
158 179 0.58
159 122 0.39
161 4 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.18
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGCGTGCGGGCGCTCAACC
GACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCGGTCCCCCCTGTGTGCTGCCCATCCTGC
TATCGCAACCCTCGGTCCGGCCGAT
Found at i:11507420 original size:26 final size:26
Alignment explanation
Indices: 11507390--11507441 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11507380 CGGTCTGATA
11507390 TTAGAC-TGGGAATGAACTCCATATGC
1 TTAGACAT-GGAATGAACTCCATATGC
*
11507416 TTAGACATGGAATGAACTCCCTATGC
1 TTAGACATGGAATGAACTCCATATGC
11507442 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCATATGC
Found at i:11508084 original size:26 final size:26
Alignment explanation
Indices: 11508048--11508100 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11508038 TCGGTTCGAT
11508048 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
11508074 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11508100 C
1 C
11508101 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11508268 original size:26 final size:26
Alignment explanation
Indices: 11508232--11508284 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11508222 CTAGTCCGAT
11508232 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* * *
11508258 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
11508284 C
1 C
11508285 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:11508351 original size:184 final size:183
Alignment explanation
Indices: 11507995--11508385 Score: 475
Period size: 184 Copynumber: 2.1 Consensus size: 183
11507985 GATCGGCCCA
* * *
11507995 GTCCCCCTTGCGTGCTG-CTGATCCTGCTACCGCAACCCTAGATTCGGTTCGATCTTAGACTGGG
1 GTCCCCCCTGCGTGCTGTC-GATCCTGCTACCGCAACCCTAGATTCAGTCCGATCTTAGACTGGG
* * *
11508059 AATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGC
65 AATAAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGC
* * * ** *
11508124 GAGCGGGCGTTCAACCGACCGAAGAGGTAGAATGTACAAGCCGAGGATCAGTCTG
130 GA-CGGGCCTTCAACCGACCGAAGAGGCAGAATGCACAAGCCGAGGATCAACCCG
* * *
11508179 GTCCCCCCTGCGTGCTGTCGATCCTGTTACCGCAACCCTTG-GTCTAGTCCGATCTTAGACTGGG
1 GTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTAGATTC-AGTCCGATCTTAGACTGGG
**
11508243 AATAAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGC
65 AATAAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGC
* * * * * **
11508308 GTA-TGGCCTCTCAGCCGGTCGGAA-AGGCATAATGCGTAAGCCGAGGATCAACCCG
130 G-ACGGGCCT-TCAACC-GACCGAAGAGGCAGAATGCACAAGCCGAGGATCAACCCG
11508363 GTCCCCCTCTGCGTGCTGTCGAT
1 GTCCCCC-CTGCGTGCTGTCGAT
11508386 TTCGCTACCG
Statistics
Matches: 177, Mismatches: 24, Indels: 11
0.83 0.11 0.05
Matches are distributed among these distances:
183 6 0.03
184 149 0.84
185 22 0.12
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (183 bp):
GTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTAGATTCAGTCCGATCTTAGACTGGGA
ATAAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCG
ACGGGCCTTCAACCGACCGAAGAGGCAGAATGCACAAGCCGAGGATCAACCCG
Found at i:11509131 original size:26 final size:26
Alignment explanation
Indices: 11509102--11509154 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11509092 CTGATCTGAT
11509102 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACATC-GTATG
*
11509128 CTTAGACTGGGGATGAACATCGTATG
1 CTTAGACTGGGAATGAACATCGTATG
11509154 C
1 C
11509155 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACATCGTATG
Found at i:11510097 original size:138 final size:138
Alignment explanation
Indices: 11509849--11510099 Score: 333
Period size: 138 Copynumber: 1.8 Consensus size: 138
11509839 AAATCTGTGT
* * * *
11509849 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
* * *
11509914 ACGAGGGGAGAGGCAGAATGCACAAGCTGGGGATTGGCCCGGTCCCCCTCTGCGTGCTGTCGGTC
66 ACGAGCGGAGAGGCAGAATGCACAAGCTGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTC
11509979 CGGTTGGG
131 CGGTTGGG
* * * * *
11509987 GCTTATACATGGAATGAACTCCCTATGCATAAGCCAACCCATGAAATGGGCGTACGGGCGCTCA-
1 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
* * * * *
11510051 ACCGATCGGAGAGGCAGAATGCGCAGGCTGAGGATCGGTCTGGTCCCCC
66 A-CGAGCGGAGAGGCAGAATGCACAAGCTGAGGATCGGCCCGGTCCCCC
11510100 CTTTGTGTTG
Statistics
Matches: 95, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
137 1 0.01
138 94 0.99
ACGTcount: A:0.24, C:0.27, G:0.32, T:0.18
Consensus pattern (138 bp):
GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
ACGAGCGGAGAGGCAGAATGCACAAGCTGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGGTC
CGGTTGGG
Found at i:11510197 original size:26 final size:26
Alignment explanation
Indices: 11510146--11510198 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11510136 CTAGTTCGAT
* *
11510146 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
11510172 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
11510198 C
1 C
11510199 CCTCCCTGCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:11510596 original size:26 final size:26
Alignment explanation
Indices: 11510567--11510619 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11510557 CCGGTTCGAT
*
11510567 CTTAGATTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
11510593 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
11510619 C
1 C
11510620 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:11511411 original size:26 final size:27
Alignment explanation
Indices: 11511373--11511429 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
11511363 CAGTTTGATA
* * *
11511373 TTAGACTAGGAATTAACTCTGTATG-C
1 TTAGACTACGAATGAACTCCGTATGCC
*
11511399 TTAGACTTCGAATGAACTCCGTATGCC
1 TTAGACTACGAATGAACTCCGTATGCC
11511426 TTAG
1 TTAG
11511430 TCAACCCACG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33
Consensus pattern (27 bp):
TTAGACTACGAATGAACTCCGTATGCC
Found at i:11512052 original size:26 final size:26
Alignment explanation
Indices: 11512011--11512063 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11512001 CTGATCCGAT
11512011 CTTAGACTGGGAATGAACTATATATG
1 CTTAGACTGGGAATGAACTATATATG
*
11512037 CTTAGACT-GGAGATGAACTCTATATG
1 CTTAGACTGGGA-ATGAACTATATATG
11512063 C
1 C
11512064 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTATATATG
Done.