Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 71 of 402
Found at i:11513068 original size:26 final size:26
Alignment explanation
Indices: 11513039--11513090 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11513029 CGATTTGATT
*
11513039 TTAGATTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
11513065 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
11513091 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:11513262 original size:26 final size:26
Alignment explanation
Indices: 11513233--11513285 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11513223 CCGGTCTGAT
*
11513233 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
11513259 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
11513285 C
1 C
11513286 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:11513762 original size:26 final size:26
Alignment explanation
Indices: 11513733--11513785 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11513723 CCGGTCTGAT
11513733 CTTAGACT-GGGAGTGAACTCCGTATG
1 CTTAGACTGGGGA-TGAACTCCGTATG
11513759 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
11513785 C
1 C
11513786 CTAAGTCGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:11514112 original size:26 final size:26
Alignment explanation
Indices: 11514076--11514135 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
11514066 GCAACCCTTG
*
11514076 ATCCG-AT-CTTAGACTGGGAATGAA
1 ATCCGTATGCTTAGAATGGGAATGAA
* *
11514100 CTCCGTATGCTTAGAATGGGGATGAA
1 ATCCGTATGCTTAGAATGGGAATGAA
11514126 ATCCGTATGC
1 ATCCGTATGC
11514136 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 4 0.13
25 2 0.07
26 24 0.80
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
ATCCGTATGCTTAGAATGGGAATGAA
Found at i:11514508 original size:26 final size:26
Alignment explanation
Indices: 11514457--11514509 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11514447 CTGGTCTGAT
*
11514457 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11514483 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
11514509 C
1 C
11514510 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11514670 original size:26 final size:26
Alignment explanation
Indices: 11514641--11514693 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11514631 CCGATCTGAT
11514641 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
11514667 CTTAGACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
11514693 C
1 C
11514694 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:11515390 original size:26 final size:26
Alignment explanation
Indices: 11515352--11515404 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11515342 GGCTCAATAT
11515352 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
11515378 CTTAGCCTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11515404 C
1 C
11515405 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11516238 original size:26 final size:26
Alignment explanation
Indices: 11516200--11516252 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11516190 CCGATCCGAT
11516200 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
11516226 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
11516252 C
1 C
11516253 CTAACCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:11516414 original size:26 final size:26
Alignment explanation
Indices: 11516376--11516428 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11516366 CCGGTCCGAT
*
11516376 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11516402 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
11516428 C
1 C
11516429 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11516485 original size:176 final size:176
Alignment explanation
Indices: 11516049--11516487 Score: 641
Period size: 176 Copynumber: 2.5 Consensus size: 176
11516039 TCCGACTGGG
* * *
11516049 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAACGAGTGTGCGGACGCTTAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAACGAGTGTGCGGGCGCTCAG
* * *
11516114 CCAGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGATCCTGCTGCTGGTCCTACTGTTG
66 CCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCTGATCCTGCTACTGGTCCTACTGTTG
11516179 GAACACTCCGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTAT
131 GAACACTCCGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTAT
* * * * *
11516225 GCTTAGACATGGAATGAACTCTGTATGCCTAACCCAACCCAGGAAACAAGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAACGAGTGTGCGGGCGCTCAG
* * * *
11516290 CCAGCTGGAGAGGCAGAATGTGCAAGTCGGTGATCGAACC-GATCTTGCTACTGGTCCTAC-GAT
66 CCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCG-ACCTGATCCTGCTACTGGTCCTACTG-T
*
11516353 TGGAACACTCCGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTAT
129 TGGAACACTCCGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTAT
* *
11516401 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAACGAGTGTGCGGGCGCTCAG
* * *
11516466 TC-GACCAGAGAGCCAGAATGCG
66 CCAG-CCGGAGAGGCAGAATGCG
11516488 TAAGCCAAGG
Statistics
Matches: 232, Mismatches: 28, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
175 2 0.01
176 228 0.98
177 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.28, T:0.21
Consensus pattern (176 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAACGAGTGTGCGGGCGCTCAG
CCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCTGATCCTGCTACTGGTCCTACTGTTG
GAACACTCCGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTAT
Found at i:11516589 original size:26 final size:26
Alignment explanation
Indices: 11516560--11516612 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11516550 CCGGTCTGAT
*
11516560 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11516586 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11516612 C
1 C
11516613 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11516841 original size:159 final size:158
Alignment explanation
Indices: 11516585--11516893 Score: 354
Period size: 159 Copynumber: 1.9 Consensus size: 158
11516575 AACTCTGTAT
* * * * * * *
11516585 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAG
1 GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACACACGAAACGAGCGTGCGGGCGCTCAG
* * * * ** * * * *
11516650 CCGGCCAAAACTGCATAATGCCCAAGTTGGGGATC-GACCCGGTCCACCTATGTGTGCTGTCGAT
66 CCGACCAAAACGGCAGAATGCACAAGCCGGGGATCAG-CCCGATCC-CCCATGCGTGCTGCCGAT
*
11516714 CCCGTTGCCACAACCCTCGGTCCAGCTGGG
129 CCCGCTGCCACAACCCTCGGTCCAGCTGGG
*
11516744 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACACACGAAACGGGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACACACGAAACGAGCGTGCGGGCGCTCA
* *
11516808 GCCGACCGAAGA-GGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGCCGAT
65 GCCGACC-AAAACGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCATGCGTGCTGCCGAT
* *
11516872 CCTGCTGCCACAACCCTTGGTC
129 CCCGCTGCCACAACCCTCGGTC
11516894 TGATTTGATC
Statistics
Matches: 124, Mismatches: 23, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
158 33 0.27
159 86 0.69
160 5 0.04
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.17
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACACACGAAACGAGCGTGCGGGCGCTCAG
CCGACCAAAACGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCATGCGTGCTGCCGATCC
CGCTGCCACAACCCTCGGTCCAGCTGGG
Found at i:11516929 original size:158 final size:159
Alignment explanation
Indices: 11516585--11516929 Score: 349
Period size: 159 Copynumber: 2.2 Consensus size: 159
11516575 AACTCTGTAT
* * * * * * *
11516585 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAG
1 GCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGCGGGCGCTCAG
* * * * ** * * * *
11516650 CCGGCCAAAACTGCATAATGCCCAAGTTGGGGATCGACCCGGTCCACCTATGTGTGCTGTCGATC
66 CCGACCAAAACGGCAGAATGCACAAGCCGGGGATCGACCCGATCCACCCATGCGTGCTGCCGATC
* *
11516715 CCGTTGCCACAACCCTCGGTCCAGCTGGG
131 CCGCTGCCACAACCCTCGGTCCAGCTGGA
* *
11516744 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACACACGAAACGGGCGTGCGGGCGCTCA
1 GCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGCGGGCGCTCA
* *
11516808 GCCGACCGAAGA-GGCAGAATGCACAAGCCGGGGATC-AGCCCGATCC-CCCCTGCGTGCTGCCG
65 GCCGACC-AAAACGGCAGAATGCACAAGCCGGGGATCGA-CCCGATCCACCCATGCGTGCTGCCG
* * * * *
11516870 ATCCTGCTGCCACAACCCTTGGT-CTGATTTGA
128 ATCCCGCTGCCACAACCCTCGGTCCAG-CTGGA
* *
11516902 TCTTAGATTGGGAATGAACTCCGTATGC
1 GCTTAGAATGGGAATGAACTCCGTATGC
11516930 TTAGACTGGG
Statistics
Matches: 150, Mismatches: 31, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.02
158 58 0.39
159 85 0.57
160 4 0.03
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGCGGGCGCTCAG
CCGACCAAAACGGCAGAATGCACAAGCCGGGGATCGACCCGATCCACCCATGCGTGCTGCCGATC
CCGCTGCCACAACCCTCGGTCCAGCTGGA
Found at i:11516939 original size:26 final size:26
Alignment explanation
Indices: 11516903--11516955 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11516893 CTGATTTGAT
*
11516903 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
11516929 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11516955 C
1 C
11516956 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11517138 original size:26 final size:26
Alignment explanation
Indices: 11517099--11517151 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11517089 CTGGTTCGAT
*
11517099 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
11517125 CTTAGACATG-GAATGAACTCCATATG
1 CTTAGAC-TGAGAATGAACTCCATATG
11517151 C
1 C
11517152 CTAAGCCCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:11517623 original size:158 final size:156
Alignment explanation
Indices: 11517196--11517623 Score: 352
Period size: 157 Copynumber: 2.7 Consensus size: 156
11517186 CAGCTGGTCG
* * * * * * *
11517196 AAGAGGCAGAATGCA-TAAG-CTGGGATCGACCCGGTCCCCCCTGCATGCTATTGATCCTGCTAC
1 AAGAGGCAGAATG-AGCAAGCCGGGGATCGACCCGAT-CCCCCTGCATGCTGTCGATCCTACTGC
*** * ** *
11517259 TATAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACT-TCGTATGCCTAAGTCAACCCAT
64 CGCAACCCTCAGTC-GGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCAACCCAT
* *
11517323 AAAATCAGTGTTCAGGCGCTGAGCTGACCA
127 AAAATCAGTGTGCAGGCGCTCAGCTGACCA
* * * *
11517353 AAGAGGCAGAATGAGCAAGCCGGGGATCGACCCGGTCCCCCTGTATGCTGTCGATCTTGCTGCCG
1 AAGAGGCAGAATGAGCAAGCCGGGGATCGACCCGATCCCCCTGCATGCTGTCGATCCTACTGCCG
* * ** **
11517418 TAACCCTCAGT-GTGACTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAA-CCATT
66 CAACCCTCAGTCG-GTCT-GATCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCA-T
* * * * *
11517480 GAAA-CGGGTGTGCGGGCGCTCAG-TCGATCG
127 AAAATC-AGTGTGCAGGCGCTCAGCT-GACCA
* * * * *
11517510 GAGAGGCAGAAT-ACGCAAGGCGGGGATCGGCCTGATCCCCCCTGCATGCTGTCGATCCTACTGT
1 AAGAGGCAGAATGA-GCAAGCCGGGGATCGACCCGAT-CCCCCTGCATGCTGTCGATCCTACTGC
11517574 CGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
64 CGCAACCCTCAGT-CGGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
11517624 TTAGACTGCG
Statistics
Matches: 217, Mismatches: 40, Indels: 27
0.76 0.14 0.10
Matches are distributed among these distances:
155 1 0.00
156 9 0.04
157 128 0.59
158 75 0.35
159 3 0.01
160 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (156 bp):
AAGAGGCAGAATGAGCAAGCCGGGGATCGACCCGATCCCCCTGCATGCTGTCGATCCTACTGCCG
CAACCCTCAGTCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAA
TCAGTGTGCAGGCGCTCAGCTGACCA
Found at i:11517626 original size:26 final size:26
Alignment explanation
Indices: 11517597--11517649 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11517587 CCGGTCTGAT
* *
11517597 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
11517623 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
11517649 C
1 C
11517650 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:11518313 original size:159 final size:158
Alignment explanation
Indices: 11517990--11518428 Score: 397
Period size: 159 Copynumber: 2.8 Consensus size: 158
11517980 ACTCCGTATG
* * * * * **
11517990 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAACGTGCGGGCACTCAGC
1 CTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
** * * ***
11518055 TGACC-AGAGAGGCAAAATGCACAAGCCGGGGATCGGTCC-GGTCCCCCCCTGGGTGCTGTCGAT
66 TGACCGA-AGAGGCAAAATGCGTAAG-CGGGGATC-GACCTGGTCCCCCTCTACATGCTGTCGAT
* * *
11518118 CTAGCTACCACAACCCTCGGGCTGGTTCGAT
128 CTAGCTACCACAACCCTCGGGCCGCTGCGAT
* * *
11518149 CTTAGACTAGGAATGAACTTCATATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGC
1 CTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* *
11518214 TGACCGAAAAGGCATAATGCGTAAGTCGGGGATCGACCTGGTCCCCCTCTACATGCTGTCGATCT
66 TGACCGAAGAGGCAAAATGCGTAAG-CGGGGATCGACCTGGTCCCCCTCTACATGCTGTCGATCT
* * * * * *
11518279 CGCTGCCACAGCCCTCGGTCCGACTGGGGT
130 AGCTACCACAACCCTCGGGCCG-CTGCGAT
* * * * * *
11518309 -TTAGAC-ACAGAATGAACACCCTATGCCTAAGCCAACCCACGAAACGGGCGTAC-GGTCGCTCA
1 CTTAGACTA-GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGT-GCTCA
* * * * *
11518371 GCCGATCGGAGAGGCAGAATGCGTAAGCTGGGGATCGACCCT-GTCCTCCT-TACATGCT
64 GCTGACCGAAGAGGCAAAATGCGTAAGC-GGGGATCGA-CCTGGTCCCCCTCTACATGCT
11518429 ACCGATCCTG
Statistics
Matches: 229, Mismatches: 44, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
158 16 0.07
159 206 0.90
160 7 0.03
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
TGACCGAAGAGGCAAAATGCGTAAGCGGGGATCGACCTGGTCCCCCTCTACATGCTGTCGATCTA
GCTACCACAACCCTCGGGCCGCTGCGAT
Found at i:11518437 original size:869 final size:864
Alignment explanation
Indices: 11517096--11518803 Score: 1987
Period size: 869 Copynumber: 2.0 Consensus size: 864
11517086 GGTCTGGTTC
**
11517096 GATCTTAGACTGAGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCCT
1 GATCTTAGACTGAGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA
* ** * * *
11517161 CCCACGAAACGAGCATGCGGGCACTCAGCTGGTCGAAGAGGCAGAATGCATAAGCTGGGATCGAC
66 CCCACGAAACGAACATGCGGGCACTCAGCTGACCGAAGAGGCAAAATGCACAAGCGGGGATCGAC
* * * * *
11517226 CCGGTCCCCCCTGCATGCTATTGATCCTGCTACTATAACCCTCGGTCTGGTCCAATCTTAGACTG
131 CCGGTCCCCCCTGCATGCTATCGATCCTGCTACCACAACCCTCGGGCTGGTCCAATCTTAGACTA
* * * * *
11517291 GGAATGAACTTCGTATGCCTAAGTCAACCCATAAAATCAGTGTTCAGGCGCTGAGCTGACCAAAG
196 GGAATGAACTTCATATGCATAAGTCAACCCACAAAATCAGCGTGCAGGCGCTGAGCTGACCAAAG
* * **
11517356 AGGCAGAATGAGCAAGCCGGGGATCGACCCGGTCCCCCTGTATGCTGTCGATCTTGCTGCCGTAA
261 AGGCAGAATGAGCAAGCCGGGGATCGACCCGGTCCCCCTCTATGCTGTCGATCTCGCTGCCACAA
** ** * *
11517421 CCCTCAGTGTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCATTGAAACG
326 CCCTCAGTCCGACTGGGGCTTAGACACAGAATGAACACCCTATGCCTAAGCCAACCATCGAAACG
* * * *
11517486 GGTGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATACGCAAGGCGGGGATCGGCCTGATCCCCC
391 GGCGTACGGGCGCTCAGCCGATCGGAGAGGCAGAATACGCAAGGCGGGGATCGCCCTGATCCCCC
* ** * * * *
11517551 CTGCATGCTGTCGATCCTACTGTCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACT
456 CTACATGCTACCGATCCTACGGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGAGAATGAACT
** * ** *
11517616 CTGTATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCCCGAAACGAGCGTGCGGGT
521 CAATATGCTTAGACTGCGAATGAACTCCATATGCCTAAGTCAACCCCCGAAACGAGCGTGCAAGC
* * * * * * * * *
11517681 GCTCAATCAG-CTAGAGAGGCCGGTCGGAGAGGCATAATACATAAGTCGAGGATCAGCTCGGTCC
586 GCTC-AGCAGACCAGAGAGGCCGGTCGAAGAGGCATAACACACAAGCCGAGGATCAACCCGATCC
* * * * ****
11517745 TCCTCTGCATGCTACCGATCCCGCTACCGATCTTGCTGCCACAATCCTCAGACCGGTTGGGGCTT
650 CCCTCCGCATGCTACCAATCCCGCTACCGATCTTGCTG-CACAACCCTCAGACCGACCAGGGCTT
* * * *
11517810 AGACATGAAATGAACTCTGTATGCCTATGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAACCGG
714 ACACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAACCGA
* *
11517875 TCGGAGAGGCAGAATGCACAGGCCAGGGATTAGCTCGATCCCC-CTGCATGCTGCCGATCCTACT
779 TCGGAGAGGCAGAATGCACAAGCCA-GGATTAGCCCGATCCCCTCTGCATGCTGCCGATCCTACT
11517939 GTCGCAACCCTCTGTTCGATCT
843 GTCGCAACCCTCTGTTCGATCT
* * * * *
11517961 GATCTTAGATTGGGAATGAACTCCGTATGCTTAGAC-TAGGGATGAACTCCGTATGCCTAAGTCA
1 GATCTTAGACTGAGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCA
* * *
11518025 ACCCATGAAATGAACGTGCGGGCACTCAGCTGACC-AGAGAGGCAAAATGCACAAGCCGGGGATC
65 ACCCACGAAACGAACATGCGGGCACTCAGCTGACCGA-AGAGGCAAAATGCACAAG-CGGGGATC
** ** * * *
11518089 GGTCCGGTCCCCCCCTGGGTGCTGTCGAT-CTAGCTACCACAACCCTCGGGCTGGTTCGATCTTA
128 GACCCGGT-CCCCCCTGCATGCTATCGATCCT-GCTACCACAACCCTCGGGCTGGTCCAATCTTA
* * *
11518153 GACTAGGAATGAACTTCATATGCATAAGTCAACCCACGAAA-CGAGCGTGCGGGTGCTGAGCTGA
191 GACTAGGAATGAACTTCATATGCATAAGTCAACCCACAAAATC-AGCGTGCAGGCGCTGAGCTGA
* * * * *
11518217 CCGAAA-AGGCATAATGCGTAAGTCGGGGATCGACCTGGTCCCCCTCTACATGCTGTCGATCTCG
255 CC-AAAGAGGCAGAATGAGCAAGCCGGGGATCGACCCGGTCCCCCTCT--ATGCTGTCGATCTCG
* * *
11518281 CTGCCACAGCCCTCGGTCCGACTGGGGTTTAGACACAGAATGAACACCCTATGCCTAAGCCAACC
317 CTGCCACAACCCTCAGTCCGACTGGGGCTTAGACACAGAATGAACACCCTATGCCTAAGCCAA-C
* * *
11518346 CA-CGAAACGGGCGTACGGTCGCTCAGCCGATCGGAGAGGCAGAATGCGTAA-GCTGGGGATCGA
381 CATCGAAACGGGCGTACGGGCGCTCAGCCGATCGGAGAGGCAGAATACGCAAGGC-GGGGATCG-
* * * * ** *
11518409 CCCTG-TCCTCCTTACATGCTACCGATCCTGCGGCCACAACTCTTGGTCTGGTCTGATCTTAGAC
444 CCCTGATCCCCCCTACATGCTACCGATCCTACGGCCACAACCCTCAGTCCGGTCTGATCTTAGAC
* * * * * * *
11518473 TGAGAATGAACTCAATATGCTTCGACTGGGGATGAACTCTATATGCGTAAGTCAACCCGCGAAAT
509 TGAGAATGAACTCAATATGCTTAGACTGCGAATGAACTCCATATGCCTAAGTCAACCCCCGAAAC
* * * * * * * * *
11518538 GAGTGTGTAAGCGCTCAGCCGACCGGAGTGGCCTGTCGAAGAGGCGTAACGCCCAAGCCGAGGAT
574 GAGCGTGCAAGCGCTCAGCAGACCAGAGAGGCCGGTCGAAGAGGCATAACACACAAGCCGAGGAT
* ** * * *
11518603 CAACCCGATCCCCCTCCGCATGCTACCAATCTCGCTGTCGGTCTTGCTGCACAACCCTCGGTCCG
639 CAACCCGATCCCCCTCCGCATGCTACCAATCCCGCTACCGATCTTGCTGCACAACCCTCAGACCG
* **
11518668 ACCAGGGCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAATCGAGCGTGCGGGC
704 ACCAGGGCTTACACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGC
* ** * ** *
11518733 GCTCAGCCGATCGGAGAGGCAGAATGTGCAAGCCAGGATTAGCCCGGTCCCCTCTGTGTGTTGCC
769 GCTCAACCGATCGGAGAGGCAGAATGCACAAGCCAGGATTAGCCCGATCCCCTCTGCATGCTGCC
11518798 GATCCT
834 GATCCT
11518804 GCTCCTGGTC
Statistics
Matches: 693, Mismatches: 136, Indels: 25
0.81 0.16 0.03
Matches are distributed among these distances:
864 2 0.00
865 100 0.14
866 16 0.02
867 148 0.21
868 121 0.17
869 299 0.43
870 7 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (864 bp):
GATCTTAGACTGAGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA
CCCACGAAACGAACATGCGGGCACTCAGCTGACCGAAGAGGCAAAATGCACAAGCGGGGATCGAC
CCGGTCCCCCCTGCATGCTATCGATCCTGCTACCACAACCCTCGGGCTGGTCCAATCTTAGACTA
GGAATGAACTTCATATGCATAAGTCAACCCACAAAATCAGCGTGCAGGCGCTGAGCTGACCAAAG
AGGCAGAATGAGCAAGCCGGGGATCGACCCGGTCCCCCTCTATGCTGTCGATCTCGCTGCCACAA
CCCTCAGTCCGACTGGGGCTTAGACACAGAATGAACACCCTATGCCTAAGCCAACCATCGAAACG
GGCGTACGGGCGCTCAGCCGATCGGAGAGGCAGAATACGCAAGGCGGGGATCGCCCTGATCCCCC
CTACATGCTACCGATCCTACGGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGAGAATGAACT
CAATATGCTTAGACTGCGAATGAACTCCATATGCCTAAGTCAACCCCCGAAACGAGCGTGCAAGC
GCTCAGCAGACCAGAGAGGCCGGTCGAAGAGGCATAACACACAAGCCGAGGATCAACCCGATCCC
CCTCCGCATGCTACCAATCCCGCTACCGATCTTGCTGCACAACCCTCAGACCGACCAGGGCTTAC
ACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAACCGATC
GGAGAGGCAGAATGCACAAGCCAGGATTAGCCCGATCCCCTCTGCATGCTGCCGATCCTACTGTC
GCAACCCTCTGTTCGATCT
Found at i:11519173 original size:158 final size:157
Alignment explanation
Indices: 11518823--11519186 Score: 356
Period size: 158 Copynumber: 2.3 Consensus size: 157
11518813 CCTACTGCTG
* * * * *
11518823 CAACCCTCGATCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
1 CAACCCTCGGTCTAGTCTGATCTTAGACT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAA
* ** * * * **
11518888 TGAGCGTGTGGGCGCTGAGCCGACCGGAGAGGCATAATGCGTAAGTTGGGGATCGACCCGATCCT
65 CGAGCGTACGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCT
*
11518953 CCTCTACGTGCTGCCAGTCCTGCTGCCA
130 CCTCTACGTGCTGCCAGTCCTGCTACCA
* ** * *
11518981 CAACCCTCGGTCTA-ACTGGGGCTTGGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
1 CAACCCTCGGTCTAGTCT-GATCTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCACG-
* * * * * *
11519045 AACGGGCTTACGGGTGCTCAGTCGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACTCGATC
63 AACGAGCGTACGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATC
* ** * *
11519110 CTCC-CTGCGTGCTATC-GATCTTGCTACCG
128 CTCCTCTACGTGCTGCCAG-TCCTGCTACCA
* * *
11519139 TAACCCTCGGTCTAGTCTAATCTTAGACTGGGAATCAACTCCATATGC
1 CAACCCTCGGTCTAGTCTGATCTTAGACT-GGAATGAACTCCATATGC
11519187 TTAGACTGGG
Statistics
Matches: 163, Mismatches: 37, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
157 4 0.02
158 101 0.62
159 58 0.36
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (157 bp):
CAACCCTCGGTCTAGTCTGATCTTAGACTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAC
GAGCGTACGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCTC
CTCTACGTGCTGCCAGTCCTGCTACCA
Found at i:11519196 original size:26 final size:26
Alignment explanation
Indices: 11519160--11519212 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11519150 CTAGTCTAAT
11519160 CTTAGACTGGGAATCAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
* * *
11519186 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
11519212 C
1 C
11519213 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:11519922 original size:26 final size:26
Alignment explanation
Indices: 11519883--11519935 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11519873 GGCTCAAACT
11519883 CTTAGACTATGAATGAACTCCGTATG
1 CTTAGACTATGAATGAACTCCGTATG
11519909 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTAT-GAATGAACTCCGTATG
11519935 C
1 C
11519936 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTATGAATGAACTCCGTATG
Found at i:11521990 original size:26 final size:26
Alignment explanation
Indices: 11521961--11522011 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
11521951 AATCTGACCA
11521961 TAGACTCAGAATGAAC-TCTGTATGCT
1 TAGACTCAGAATGAACTTC-GTATGCT
* *
11521987 TAGACTGAGGATGAACTTCGTATGC
1 TAGACTCAGAATGAACTTCGTATGC
11522012 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
TAGACTCAGAATGAACTTCGTATGCT
Found at i:11522902 original size:26 final size:26
Alignment explanation
Indices: 11522864--11522916 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11522854 GGCTCAAAAT
**
11522864 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
11522890 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
11522916 C
1 C
11522917 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:11523185 original size:159 final size:159
Alignment explanation
Indices: 11522890--11523386 Score: 531
Period size: 159 Copynumber: 3.1 Consensus size: 159
11522880 ACTCCGTATG
** * *
11522890 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGTGTGCGGGTGCTAAG-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTAAGC
* * * * *
11522954 TCGGAT-GGAGAGGTAGAATGTGCAAGCCGAGGATCGGCCCGGTCCCCCCCTACGTGCTGTCAAT
66 T-GG-TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCCCTGCGTGCTGTCGAT
* *
11523018 CCTGCTGCCGCAACCCTCGGTCTGGTCT-GAT
128 CCTGCTGCCACAACCCTCGGTCCGGTCTCGAT
* * * * * **
11523049 CTTAGACTGGGAATGAACTCCGTACGCATAAGTCAACCCATGAAATGAGCGTGCAGGCACTAAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTAAGC
* * * * * *
11523114 TGGTCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTCTGCATGCTGCCGGTCC
66 TGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATCC
** * **
11523179 CACTGCCACAACCCTCGGTCCGG-CTGGGG
130 TGCTGCCACAACCCTCGGTCCGGTCTCGAT
* * * * *
11523208 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCTTACGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTAAG
* * * * *
11523272 CCGG-CTGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGTGTGCTGTCGATC
65 CTGGTC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
*
11523336 TTGCTGCCACAACCCTCGGTCCGGT-TCGAT
129 CTGCTGCCACAACCCTCGGTCCGGTCTCGAT
11523366 CTTAGACTGGGAATGAACTCC
1 CTTAGACTGGGAATGAACTCC
11523387 AATGCTTAGA
Statistics
Matches: 273, Mismatches: 57, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
157 1 0.00
158 63 0.23
159 207 0.76
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTAAGC
TGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCGGTCTCGAT
Found at i:11524648 original size:25 final size:26
Alignment explanation
Indices: 11524608--11524659 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
11524598 CCAGTCCGAT
11524608 CTTAGACTGGGAATGAACTCCA-ATG
1 CTTAGACTGGGAATGAACTCCATATG
11524633 CTTAGACTGAGG-ATGAACTCCATATG
1 CTTAGACTG-GGAATGAACTCCATATG
11524659 C
1 C
11524660 CTAAGTCATC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11525226 original size:15 final size:16
Alignment explanation
Indices: 11525195--11525227 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
11525185 CACACCCCCC
*
11525195 CGGACCCCCCAATTGT
1 CGGAACCCCCAATTGT
11525211 CGGAACCCCCAA-TGT
1 CGGAACCCCCAATTGT
11525226 CG
1 CG
11525228 CCGGTTAGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.21, C:0.42, G:0.21, T:0.15
Consensus pattern (16 bp):
CGGAACCCCCAATTGT
Found at i:11525259 original size:11 final size:11
Alignment explanation
Indices: 11525245--11525271 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
11525235 GGCTCTCCAG
11525245 CGATGCTCCGA
1 CGATGCTCCGA
11525256 CGATGCTCCGA
1 CGATGCTCCGA
11525267 CGATG
1 CGATG
11525272 GTGCCCCGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.33, G:0.30, T:0.19
Consensus pattern (11 bp):
CGATGCTCCGA
Found at i:11525660 original size:159 final size:158
Alignment explanation
Indices: 11525369--11525856 Score: 419
Period size: 159 Copynumber: 3.1 Consensus size: 158
11525359 CTGTATGCTT
* * ** * * * *
11525369 AACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGT-ACGGGCGCTCAACCGGCCGGAGAGGCA
1 AACTCCATATGCATAAGCCAACCCACAAAACGAGCGTGAC-GGCGCTCAGCCGACCGAAGAGGCA
* ** * * * * ** *
11525433 GAATGTGC-AAGTTGGGGATCGGCCCAGTCCCCCCTTGCGTGCTGTTGATCCCGCTGCTGCAACC
65 GAATG-CCTAAGCCGAGGATCAGCCCGGTCCCCCC-TACGTGCTGCCGATCCCGCTGCCGCAACC
11525497 CTCGGTCCGATCTGATCTTAGACTGGGAATG
128 CTCGGTCCGATCTGATCTTAGACTGGGAATG
* * * * * * *
11525528 AACTCCATATGCATAAGTCAACCCACGAAATGAGCGT-ACGGCTGTTGAGTCGATCGAAGAGGCA
1 AACTCCATATGCATAAGCCAACCCACAAAACGAGCGTGACGGC-GCTCAGCCGACCGAAGAGGCA
* * * * * *
11525592 TAATGCGC-AAGCCGAGGATCGGCCCGGTCCCTCTCTACGTGCTGCCGGTCCCGCTGCCACAACG
65 GAATGC-CTAAGCCGAGGATCAGCCCGGTCCC-CCCTACGTGCTGCCGATCCCGCTGCCGCAACC
** **
11525656 CTCGGTCCGA-CTAGGGCTTAGACAAGGAATG
128 CTCGGTCCGATCT-GATCTTAGACTGGGAATG
* * ** *
11525687 AACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGTGGGCGCTCAGCCGGCCGAAGAGGCAG
1 AACTCCATATGCATAAGCCAACCCACAAAACGAGCGTGACGGCGCTCAGCCGACCGAAGAGGCAG
* * * * * * *
11525752 AATGCCTAAGTCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGTAACCCTT
66 AATGCCTAAGCCGAGGATCAGCCCGGTCCCCCCTACGTGCTGCCGATCCCGCTGCCGCAACCCTC
* * *
11525817 GATCCGATCCGATCATAGACTGGGAATG
131 GGTCCGATCTGATCTTAGACTGGGAATG
*
11525845 AACTCTATATGC
1 AACTCCATATGC
11525857 TTAGACTGGG
Statistics
Matches: 257, Mismatches: 65, Indels: 15
0.76 0.19 0.04
Matches are distributed among these distances:
158 61 0.24
159 191 0.74
160 5 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
AACTCCATATGCATAAGCCAACCCACAAAACGAGCGTGACGGCGCTCAGCCGACCGAAGAGGCAG
AATGCCTAAGCCGAGGATCAGCCCGGTCCCCCCTACGTGCTGCCGATCCCGCTGCCGCAACCCTC
GGTCCGATCTGATCTTAGACTGGGAATG
Found at i:11526591 original size:26 final size:26
Alignment explanation
Indices: 11526553--11526605 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11526543 GGCTCAAACT
11526553 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11526579 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
11526605 C
1 C
11526606 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11529982 original size:23 final size:26
Alignment explanation
Indices: 11529951--11530014 Score: 89
Period size: 23 Copynumber: 2.6 Consensus size: 26
11529941 GTTGACTTAG
11529951 GCATACGGAGTTCA-CCCCAGTCT-A
1 GCATACGGAGTTCATCCCCAGTCTAA
*
11529975 -CATACGGAGTTCATCTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
11530000 GCATACGAAGTTCAT
1 GCATACGGAGTTCAT
11530015 TCCATGTCTA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
23 13 0.37
24 8 0.23
25 1 0.03
26 13 0.37
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11530011 original size:26 final size:26
Alignment explanation
Indices: 11529951--11530025 Score: 95
Period size: 26 Copynumber: 3.0 Consensus size: 26
11529941 GTTGACTTAG
*
11529951 GCATACGGAGTTCA-CCCCAGTCT-A
1 GCATACGGAGTTCATCTCCAGTCTAA
11529975 -CATACGGAGTTCATCTCCAGTCTAA
1 GCATACGGAGTTCATCTCCAGTCTAA
*
11530000 GCATACGAAGTTCAT-TCCATGTCTAA
1 GCATACGGAGTTCATCTCCA-GTCTAA
11530026 CCCTAGCCAA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
23 13 0.29
24 8 0.18
25 5 0.11
26 19 0.42
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAGTCTAA
Found at i:11530352 original size:26 final size:27
Alignment explanation
Indices: 11530313--11530366 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 27
11530303 TGTTGCTTAG
*
11530313 GCATAACGGAGTTCATT-CCATGTCTAA
1 GCATAACGAAGTTCATTCCCA-GTCTAA
11530340 GCAT-ACGAAGTTCATTCCCAGTCTAA
1 GCATAACGAAGTTCATTCCCAGTCTAA
11530366 G
1 G
11530367 ATCAGACTCG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 18 0.72
27 7 0.28
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.28
Consensus pattern (27 bp):
GCATAACGAAGTTCATTCCCAGTCTAA
Found at i:11538151 original size:159 final size:157
Alignment explanation
Indices: 11537856--11538358 Score: 523
Period size: 159 Copynumber: 3.2 Consensus size: 157
11537846 CCCAGTCCAA
* * * * **
11537856 GCATACGGAGTTCATT-CATAGTCTAAG-ATCAGACCAGACCGAGGGTTACGACAGCAGGATCGG
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCAGACTGAGGGTTACG-GAGCAGGACCAA
* * * * *
11537919 CAGCACGCAGGGGGGATCGAACTGATCCCTAGCTTGCGCATTCTGCCTCTCTGACCGGTTGAGCA
64 CAGCACGCAGGGGGGACCGAGCTGATCCCTGGCTTGCGCATTCTGCCTCT-TGGCCAGTTGAGCA
11537984 CCCGCACGC-CTGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* * * * ** * *
11538014 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCCGATTGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACTGAGGGTTACGG-AGCAGGACCAAC
* * * * *
11538078 AGCTCGCAGAGGGGGACCGAGCTGATCCCTGGCTTGCGCATTATGCCTCTATGGCCAGCTCAGCG
65 AGCACGCAG-GGGGGACCGAGCTGATCCCTGGCTTGCGCATTCTGCCTCT-TGGCCAGTTGAGCA
* *
11538143 CCCACACGCTCGTTTCGTGGGTTGACTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * *
11538173 GAATACGGAGTTCATTCCCTATCTAAG-ATCAGACCAGACTGAGGGTTACGGTGTAGGATCAACA
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACTGAGGGTTACGGAGCAGGACCAACA
* * * * **
11538237 GCACGCAGGGGGGACCG-GACCGGTCCCCGACTTATGCATTCTGCCTCTTCGGCCAGTTGAGCAC
66 GCACGCAGGGGGGACCGAG-CTGATCCCTGGCTTGCGCATTCTGCCTCTT-GGCCAGTTGAGCAC
11538301 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
11538330 GCATACAGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
11538359 TATAGAGTTC
Statistics
Matches: 279, Mismatches: 57, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
156 2 0.01
157 92 0.33
158 70 0.25
159 114 0.41
160 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACTGAGGGTTACGGAGCAGGACCAACA
GCACGCAGGGGGGACCGAGCTGATCCCTGGCTTGCGCATTCTGCCTCTTGGCCAGTTGAGCACCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:11538381 original size:26 final size:26
Alignment explanation
Indices: 11538330--11538382 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11538320 GTTGGCTTAG
*
11538330 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGCCTAA
*
11538356 GCATATAGAGTTCATTCCCA-GCCTAA
1 GCATACAGAGTTCATT-CCATGCCTAA
11538382 G
1 G
11538383 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGCCTAA
Found at i:11538747 original size:26 final size:26
Alignment explanation
Indices: 11538711--11538760 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
11538701 GTTGACTTAG
*
11538711 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCAAGTCTAA
* *
11538737 GCATACGGAGTTCATTCCAAGTCT
1 GCATACAGAGTTCATCCCAAGTCT
11538761 TAGATAAGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCAAGTCTAA
Found at i:11539787 original size:26 final size:26
Alignment explanation
Indices: 11539743--11539819 Score: 129
Period size: 26 Copynumber: 3.0 Consensus size: 26
11539733 TGACTTAGGA
11539743 ATACGGAGTTCA-TCACCAGTCTAAGC
1 ATACGGAGTTCATTC-CCAGTCTAAGC
*
11539769 ATATGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
11539795 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
11539820 ATCACACTGG
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
26 46 0.96
27 2 0.04
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:11540113 original size:159 final size:158
Alignment explanation
Indices: 11539793--11540133 Score: 386
Period size: 159 Copynumber: 2.2 Consensus size: 158
11539783 CCCAGTCTAA
* *
11539793 GCATACGGAGTTCATTCCCAGTCTAAGATCACACTGGACCGAGGGTTGCGACAGCAAGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCACACTGGACCGAGGGTTGCGACAGCAAGACCGGCA
* * * * *
11539858 GCACGCAGGGGGGACCGGGCCGATCTCTGGCTTACGCATTCTGCCTCTTTGACCGGTTGAGTGCC
66 GCACGCAGGGGGGACCGGGCCGATCTCCGGCTTACGCATTATGCCTCTTTGACCGGCTCAGCGCC
* * *
11539923 CGCATGCCCGTTTTGTGGGTTGGCTTAG
131 CGCATGCCCGTTTCGTGAGTTGACTTAG
* * * * *
11539951 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCGGACCGAGGGTTGTGGCAGC-AGAACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGACCACACT-GGACCGAGGGTTGCGACAGCAAG-ACCG
* * * *
11540013 GTAGCACGCAGAGGGGGACCGGGCCGATCTCCGGCTTGCGCATTATGCCT-TTTCGGCTGGCTCA
63 GCAGCACGCAG-GGGGGACCGGGCCGATCTCCGGCTTACGCATTATGCCTCTTT-GACCGGCTCA
* **
11540077 GCGCCTGCATGCTTGTTTCGTGAGTTGACTTAG
126 GCGCCCGCATGCCCGTTTCGTGAGTTGACTTAG
*
11540110 GCATACGGCA-TTTATTCCCAGTCT
1 GCATACGG-AGTTCATTCCCAGTCT
11540134 GAGAGTAGAT
Statistics
Matches: 152, Mismatches: 24, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
157 9 0.06
158 56 0.37
159 83 0.55
160 4 0.03
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCACACTGGACCGAGGGTTGCGACAGCAAGACCGGCA
GCACGCAGGGGGGACCGGGCCGATCTCCGGCTTACGCATTATGCCTCTTTGACCGGCTCAGCGCC
CGCATGCCCGTTTCGTGAGTTGACTTAG
Found at i:11540147 original size:159 final size:158
Alignment explanation
Indices: 11539828--11540293 Score: 421
Period size: 159 Copynumber: 3.0 Consensus size: 158
11539818 AGATCACACT
* * * *
11539828 GGACCGAGGGTTGCGACAGCA-AGATCGGCAGCACGCAGGGGGGACCGGGCCGATCTCTGGCTTA
1 GGACCGAGGGTTGCGGCAGCAGA-ATCGGTAGCACGCAGGGGGGACCGGGCCGATCTCCGGCTTG
* * * * * *
11539892 CGCATTCTGCCTCTTT-GACCGGTTGAGTGCCCGCATGCCCGTTTTGTGGGTTGGCTTAGGCATA
65 CGCATTCTGCCT-TTTCGACCGGCTCAGCGCCCGCATGCCCGTTTCGTGAGTTGACTTAGGCATA
* *
11539956 GGGAGTTCATTCCATGTCTAAGCCCCAGTC
129 GGCAGTTCATTCCATGTCTAAGCACCAGTC
* *
11539986 GGACCGAGGGTTGTGGCAGCAGAACCGGTAGCACGCAGAGGGGGACCGGGCCGATCTCCGGCTTG
1 GGACCGAGGGTTGCGGCAGCAGAATCGGTAGCACGCAG-GGGGGACCGGGCCGATCTCCGGCTTG
* * * * **
11540051 CGCATTATGCCTTTTCGGCTGGCTCAGCGCCTGCATGCTTGTTTCGTGAGTTGACTTAGGCATAC
65 CGCATTCTGCCTTTTCGACCGGCTCAGCGCCCGCATGCCCGTTTCGTGAGTTGACTTAGGCATA-
* * **
11540116 GGCA-TTTATTCCCA-GTCTGAG-AGTAGATC
129 GGCAGTTCATT-CCATGTCTAAGCACCAG-TC
* * * * * * * * *
11540145 GGACCGAGGGTTACGGTAGCAGGATTCGATAGCACGTATGGGGGACCGAGCCGATCCCCGTCTTG
1 GGACCGAGGGTTGCGGCAGCA-GAATCGGTAGCACGCAGGGGGGACCGGGCCGATCTCCGGCTTG
* * * * * * * *
11540210 CACATTCTGCCTTTTCCATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT-AGCTTAGGCAT-
65 CGCATTCTGCCTTTTCGACCGGCTCAGCGCCCGCATGCCCGTTTCGTGAGTTGA-CTTAGGCATA
11540273 ---AGTTCATTCCATGTCTAAGCA
129 GGCAGTTCATTCCATGTCTAAGCA
11540294 TACAGAGTTC
Statistics
Matches: 248, Mismatches: 49, Indels: 24
0.77 0.15 0.07
Matches are distributed among these distances:
154 4 0.02
155 11 0.04
156 1 0.00
158 38 0.15
159 176 0.71
160 18 0.07
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GGACCGAGGGTTGCGGCAGCAGAATCGGTAGCACGCAGGGGGGACCGGGCCGATCTCCGGCTTGC
GCATTCTGCCTTTTCGACCGGCTCAGCGCCCGCATGCCCGTTTCGTGAGTTGACTTAGGCATAGG
CAGTTCATTCCATGTCTAAGCACCAGTC
Found at i:11540652 original size:26 final size:26
Alignment explanation
Indices: 11540622--11540671 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
11540612 GACTTAGGCA
11540622 TACGGAGTTCATCCCTAATCTAAGCC
1 TACGGAGTTCATCCCTAATCTAAGCC
* *
11540648 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATCCCTAATCTAAG
11540672 ATCGGACTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATCCCTAATCTAAGCC
Found at i:11540969 original size:158 final size:158
Alignment explanation
Indices: 11540696--11541776 Score: 855
Period size: 158 Copynumber: 6.9 Consensus size: 158
11540686 AGGGTTACGA
* * * * * * **
11540696 CAGCAGGATTGGCAGCACGCA--GGGGATCGAGCCAAT-CCTCGACTTGCGAATTCCGCCTCTTC
1 CAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCT-GGCTTGCGCATTATGCCTCTTC
* * * *
11540758 GGCCGGCTAAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
65 GGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
**
11540823 CTAAGCCCCATCCAAATCGAGGGTTGTGG
130 CTAAGCCCCATCCGGATCGAGGGTTGTGG
** * * * * *
11540852 CAGTGGGACCGGCAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGTGCATTATGCCTCTTTG
1 CAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCG
* * * * * * * *
11540917 GTCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCAGTCTAAGTC
66 GCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* ** ** *
11540982 TAAGATCGAAT-CGGATCGAGGGTTACGA
131 TAAG-CCCCATCCGGATCGAGGGTTGTGG
* * * * * *
11541010 CAGTAGGATCGACAGCACGTAGGGGGGATCGGGTCGATCCCTGACTTGCGCATTCTACCTC-TCA
1 CAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTC-
** * * * * * *
11541074 AACCGAC-CGAGTGCCTGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
65 GGCCGGCTC-AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
*
11541138 TCTAAGCCCCAGCCGGATCGAGGGTTGTGG
129 TCTAAGCCCCATCCGGATCGAGGGTTGTGG
* * *
11541168 CAGC-GAGACCGACAGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTT
1 CAGCAG-GATCGACAGCACGCAG-GGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTT
* * * * * * * * * * *
11541232 CGGCCAGCACAGTGCCCGCACTCTCATTTCATGGGTTGACTTATGCGTACGGAGTTTATTTC-TA
64 CGGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-
** * ***
11541296 GTCTAAG-ATCAGACCGGA-CTGAGGGTTGCAA
128 GTCTAAGCCCCA-TCCGGATC-GAGGGTTGTGG
** * * * * *
11541327 CAGCAGGATCGGTAGCACGCAGGGGGGATCGGGCTGATCCCTGGTTTGCGCATTCTACCTCTCCG
1 CAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCG
* * * * * *
11541392 GCTGGCTGAGCGCCTGCACG-TCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
66 GCCGGCTCAGCGCCCGCACGCT-CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * *
11541456 CTAAACCCCAGT-CGCATCAAGGGTTGTGG
130 CTAAGCCCCA-TCCGGATCGAGGGTTGTGG
* * * * *
11541485 CAGCGGGATCGGCAGCACGCAGAGGAGGACCAGGCCGATCCC-GGCTTGCGCATTATGCCTCTTC
1 CAGCAGGATCGACAGCACGCAG-GGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTC
* * * * *
11541549 GGTCAGCTCAGCGCCTGCACGCTCGTTTCGTGGGTT-GCTTAGGCATACGAAGTTCATTCCCA-A
65 GGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATG
**** * *
11541612 TCTAAGATTGGA-CC-AAACTGAGGGTTGTGG
129 TCTAAG-CCCCATCCGGATC-GAGGGTTGTGG
* * * ** * *
11541642 TAGCAGGATCGATAGCACGCAGGGGGGATCGGGCTGATCCCCAGCTTGCGCATTCTACCTCTTCG
1 CAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCG
* * * * * * * *
11541707 GTCGGCTGAGCGCCCACATGCTCGCTTCGTGGTTTGGCTTACGCATACGGAGTTAATTCCATGTC
66 GCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
11541772 TAAGC
131 TAAGC
11541777 ATATGGAGTT
Statistics
Matches: 721, Mismatches: 176, Indels: 55
0.76 0.18 0.06
Matches are distributed among these distances:
156 34 0.05
157 111 0.15
158 430 0.60
159 142 0.20
160 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
CAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCG
GCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGCCCCATCCGGATCGAGGGTTGTGG
Found at i:11541356 original size:317 final size:316
Alignment explanation
Indices: 11540648--11541776 Score: 1315
Period size: 317 Copynumber: 3.6 Consensus size: 316
11540638 AATCTAAGCC
* * *
11540648 TACGGAGTTCATTCCTAGTCTAAGATCGGACTGAACTGAGGGTTACGACAGCAGGATTGGCAGCA
1 TACGGAGTTCATTCCTAGTCTAAGATCGGACCGAACTGAGGGTTACGACAGCAGGATCGACAGCA
* ** * ** * **
11540713 CGCA--GGGGATCGAGCCAAT-CCTCGACTTGCGAATTCCGCCTCTTCGGCCGGCTAAGCGCCCA
66 CGCAGGGGGGATCGGGCTGATCCCT-GACTTGCGCATTCTACCTC-TCGGCCGGCTGAGCGCCTG
* * *
11540775 CACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCCAAAT
129 CACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAAT
* * *
11540840 CGAGGGTTGTGGCAGTGGGACCGGCAGCACGCAG-GGGGGACCGGGCCGATCCCTGGCTTGTGCA
194 CGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCA
* * *
11540904 TTATGCCTCTTTGGTCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTATGCA
259 TTATGCCTCTTCGGTCAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGCA
* * * * *
11540962 TACGGAGTTCAGT-CTAAGTCTAAGATCGAATCGGA-TCGAGGGTTACGACAGTAGGATCGACAG
1 TACGGAGTTCATTCCT-AGTCTAAGATCGGACCGAACT-GAGGGTTACGACAGCAGGATCGACAG
* ** * * *
11541025 CACGTAGGGGGGATCGGG-TCGATCCCTGACTTGCGCATTCTACCTCTCAAACCGACCGAGTGCC
64 CACGCAGGGGGGATCGGGCT-GATCCCTGACTTGCGCATTCTACCTCTC-GGCCGGCTGAGCGCC
*
11541089 TGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
127 TGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGA
* * * *
11541154 ATCGAGGGTTGTGGCAGCGAGACCGACAGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTGCG
192 ATCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCG
* * * * * *
11541219 CATTATGCCTCTTCGGCCAGCACAGTGCCCGCACTCTCATTTCATGGGTTGACTTATGCG
257 CATTATGCCTCTTCGGTCAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGCA
* * * * * * **
11541279 TACGGAGTTTATTTCTAGTCTAAGATCAGACCGGACTGAGGGTTGCAACAGCAGGATCGGTAGCA
1 TACGGAGTTCATTCCTAGTCTAAGATCGGACCGAACTGAGGGTTACGACAGCAGGATCGACAGCA
** *
11541344 CGCAGGGGGGATCGGGCTGATCCCTGGTTTGCGCATTCTACCTCTCCGGCTGGCTGAGCGCCTGC
66 CGCAGGGGGGATCGGGCTGATCCCTGACTTGCGCATTCTACCTCT-CGGCCGGCTGAGCGCCTGC
* * * * *
11541409 ACGTCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGTCGCATC
130 ACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAATC
* * * *
11541474 AAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGAGGACCAGGCCGAT-CCCGGCTTGCGCAT
195 GAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCAT
* * *
11541538 TATGCCTCTTCGGTCAGCTCAGCGCCTGCACGCTCGTTTCGTGGGTTG-CTTAGGCA
260 TATGCCTCTTCGGTCAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGCA
* * * * * ** ** *
11541594 TACGAAGTTCATTCCCAATCTAAGATTGGACCAAACTGAGGGTTGTGGTAGCAGGATCGATAGCA
1 TACGGAGTTCATTCCTAGTCTAAGATCGGACCGAACTGAGGGTTACGACAGCAGGATCGACAGCA
* * **
11541659 CGCAGGGGGGATCGGGCTGATCCC-CAGCTTGCGCATTCTACCTCTTCGGTCGGCTGAGCGCCCA
66 CGCAGGGGGGATCGGGCTGATCCCTGA-CTTGCGCATTCTACCTC-TCGGCCGGCTGAGCGCCTG
* * ** * * * *
11541723 CATGCTCGCTTCGTGGTTTGGCTTACGCATACGGAGTTAATTCCATGTCTAAGC
129 CACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
11541777 ATATGGAGTT
Statistics
Matches: 685, Mismatches: 116, Indels: 27
0.83 0.14 0.03
Matches are distributed among these distances:
313 3 0.00
314 55 0.08
315 156 0.23
316 183 0.27
317 283 0.41
318 5 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (316 bp):
TACGGAGTTCATTCCTAGTCTAAGATCGGACCGAACTGAGGGTTACGACAGCAGGATCGACAGCA
CGCAGGGGGGATCGGGCTGATCCCTGACTTGCGCATTCTACCTCTCGGCCGGCTGAGCGCCTGCA
CGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAATCG
AGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATT
ATGCCTCTTCGGTCAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGCA
Found at i:11541785 original size:26 final size:26
Alignment explanation
Indices: 11541749--11541800 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11541739 TTTGGCTTAC
11541749 GCATACGGAGTTAATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
* *
11541775 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
11541801 CATTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:11542979 original size:157 final size:158
Alignment explanation
Indices: 11542493--11542992 Score: 485
Period size: 159 Copynumber: 3.2 Consensus size: 158
11542483 CCCAGTCTAA
* *
11542493 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACCGAGGGTTGCGGCTA-TAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGG-TAGTAGGATCGA
* * * * * *
11542556 CAGCACGTA-GGGGGACCAGGCTGATCCCTGGCTTGCGCATTCTGCTTCTCCAACCGATTGAGCA
64 CAGCACGTAGGGGGGACCGGGCCGATTCCTGGCTTGCGCATTATGCTTCTCCAGCCGACTGAGCA
* *
11542620 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * *** *** * * * *
11542650 GCATAGGGAGTTCATTACATGTCTGAACCCCAG-CCGGGTTGAGGGTTGTGGCAGTTGGATCGGC
1 GCATACGGAGTTCATTCCATGTCT-AAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATCGAC
* * * * * * * *
11542714 AGCACGTAGAAGAGGACCGAGCCGA-TCCTTGACTTGCGCATTATACCTCT-CATGCCGGCTCAG
65 AGCACGTAG-GGGGGACCGGGCCGATTCC-TGGCTTGCGCATTATGCTTCTCCA-GCCGACTGAG
* * * *
11542777 CGCCCGTATGCTCGTTTCATGGGTTGACTTAG
127 CACCCGTACGCTCGTTTCGTGGGTTGGCTTAG
** * * *
11542809 GCATATAGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATCGAC
* * *
11542873 AGCATGTAGGGGGGACCGGGCCGATTCCTGGCTTGCACATT-TGCTTCTCCGGCCGACTGAGCAC
65 AGCACGTAGGGGGGACCGGGCCGATTCCTGGCTTGCGCATTATGCTTCTCCAGCCGACTGAGCAC
*
11542937 CCGTACGCTCATTTCGTGGGTTGGCTTAG
130 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
*
11542966 GCGTACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
11542993 CATACGGAGT
Statistics
Matches: 262, Mismatches: 69, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
156 6 0.02
157 108 0.41
158 37 0.14
159 109 0.42
160 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATCGACA
GCACGTAGGGGGGACCGGGCCGATTCCTGGCTTGCGCATTATGCTTCTCCAGCCGACTGAGCACC
CGTACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:11543016 original size:26 final size:26
Alignment explanation
Indices: 11542969--11543018 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
11542959 GGCTTAGGCG
*
11542969 TACGGAGTTCATTCCATGTCTAAGCA
1 TACGGAGTTCATTCCATATCTAAGCA
11542995 TACGGAGTTCATTCCCA-ATCTAAG
1 TACGGAGTTCATT-CCATATCTAAG
11543019 ATCGGATCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCATATCTAAGCA
Found at i:11543948 original size:11 final size:11
Alignment explanation
Indices: 11543932--11543957 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
11543922 CCCAGGGCAC
11543932 CATCGTCGGAG
1 CATCGTCGGAG
11543943 CATCGTCGGAG
1 CATCGTCGGAG
11543954 CATC
1 CATC
11543958 ACCAGAGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:11545247 original size:26 final size:26
Alignment explanation
Indices: 11545211--11545263 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11545201 GTTGACTTAG
11545211 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* * *
11545237 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
11545263 G
1 G
11545264 ATCAAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:11545761 original size:26 final size:26
Alignment explanation
Indices: 11545711--11545763 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11545701 GTTGGCTTAG
*
11545711 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
11545737 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
11545763 G
1 G
11545764 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:11546109 original size:26 final size:26
Alignment explanation
Indices: 11546079--11546131 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11546069 GTTGACTTAG
11546079 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
11546105 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11546131 G
1 G
11546132 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11546145 original size:368 final size:355
Alignment explanation
Indices: 11545653--11546325 Score: 877
Period size: 355 Copynumber: 1.9 Consensus size: 355
11545643 CCTGGCTTGT
* * * *
11545653 GCATTGTGCCTCTCCGATCGACTGAGCACCTGCACGCTCGTTCCATGGGTTGGCTTAGGCATACG
1 GCATTATGCCTCTCCGACCGACTGAGCACCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACG
* *
11545718 GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGT
66 GAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGG-
* *
11545783 TGCAGTAACAGGACAAGCAGCAAGATCGATAGCACGCAGGAAG-GGACCAGGCCGATC-CCTAGC
130 T----T-ACA-G-C-AGCAG---GATAGACAGCACGCAGG--GTGGACCAGGCCGATCTCC-AGC
* * * * * *
11545846 TTGTGCATTCTGCCTCTTCGGTCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
181 TTGCGCATTCTACCTCTCCGGTCGACTGAGCACCCGCACACCCGTTTCGTGAGTTGGCTTAGGCA
* * *
11545911 TACAGAGTTCATTCCATGTCTAAGCCCCAACCAGATC-GAGGGTTGTGGCAGCAGGACCGACAGC
246 TACAGAGTTCATTCCATGTCTAAACCCCAACC-GAACTGAGGGTTGTAGCAGCAGGACCGACAGC
11545975 GAGATCACCAGCACGAAGAGGGGGACTAGGATAATCCACGGATTAC
310 GAGATCACCAGCACGAAGAGGGGGACTAGGATAATCCACGGATTAC
* * * *
11546021 GCATTATGCCTCTCCGGCCGATTGAGCACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACG
1 GCATTATGCCTCTCCGACCGACTGAGCACCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACG
* * *
11546086 GAGTTCATCCCCA-GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGG
66 GAGTTCAT-CCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGG
* * * *
11546150 TTACAGCAGCAGGATAGGCAGCACGTAGGGTGGACCGGGCCGATCTCCGGCTTGCGCATTCTACC
130 TTACAGCAGCAGGATAGACAGCACGCAGGGTGGACCAGGCCGATCTCCAGCTTGCGCATTCTACC
* **
11546215 TCTCCGGTCGACTGAGCGCCCGCACACCCGTTTCGTGAGTTGGCTTAGGCATAGGGAGTTCATTC
195 TCTCCGGTCGACTGAGCACCCGCACACCCGTTTCGTGAGTTGGCTTAGGCATACAGAGTTCATTC
*
11546280 CATGTCTAAACCCCAGCCGAACTGAGGGTTGTAGCAGCAGGACCGA
260 CATGTCTAAACCCCAACCGAACTGAGGGTTGTAGCAGCAGGACCGA
11546326 TAGTATGCAG
Statistics
Matches: 269, Mismatches: 32, Indels: 21
0.84 0.10 0.07
Matches are distributed among these distances:
354 4 0.01
355 123 0.46
356 15 0.06
359 5 0.02
360 1 0.00
361 1 0.00
362 3 0.01
363 1 0.00
367 1 0.00
368 112 0.42
369 3 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.22
Consensus pattern (355 bp):
GCATTATGCCTCTCCGACCGACTGAGCACCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACG
GAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGT
TACAGCAGCAGGATAGACAGCACGCAGGGTGGACCAGGCCGATCTCCAGCTTGCGCATTCTACCT
CTCCGGTCGACTGAGCACCCGCACACCCGTTTCGTGAGTTGGCTTAGGCATACAGAGTTCATTCC
ATGTCTAAACCCCAACCGAACTGAGGGTTGTAGCAGCAGGACCGACAGCGAGATCACCAGCACGA
AGAGGGGGACTAGGATAATCCACGGATTAC
Found at i:11546606 original size:159 final size:159
Alignment explanation
Indices: 11546105--11546607 Score: 439
Period size: 159 Copynumber: 3.2 Consensus size: 159
11546095 CCCAGTCTAA
* * * **
11546105 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTAC-AGCAGCAGGATAGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGAGCAGCAGGATCGAT
* * * * * * *
11546169 AGCACGTA-GGGTGGACCGGGCCGATCTCCGGCTTGCGCATTCTACCTCTCCGGTCGACTGAGCG
66 AGCATGCAGGGGGGGACCGGGCCGATCACCGGCTTGCGCATTCTACCTCTCCAGTAG-CTGAACG
* * * * *
11546233 CCCGCACACCCGTTTCGTGAGTTGGCTTAG
130 CCCACACGCTCATTTCGTGGGTTGGCTTAG
* * ** * * *
11546263 GCATAGGGAGTTCATT-CCATGTCTAA-ACCCCAGCCGAACTGAGGGTT--GTAGCAGCAGGACC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTACG-AGCAGCAGGATC
* * * ** * * * * * * *
11546324 GATAGTATGCAGAGGGGGATCGAACTGATCACCGGCTTGCGCATTATGCTTCTCTGACCTA-CTC
63 GATAGCATGCAGGGGGGGACCGGGCCGATCACCGGCTTGCGCATTCTACCTCTC-CA-GTAGCTG
** * * *
11546388 ATTGCCCATACGCTCATTTTGTGGGTTGACTTAG
126 AACGCCCACACGCTCATTTCGTGGGTTGGCTTAG
* * *
11546422 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTACGA-TAGTAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGAGCAGCAGGATCGAT
* * * *
11546486 AGCATGCAGGGGGGGACCGGGCCGGTCCCCGACTTACGCATTCTACCTCTCCAGTAGGCTGAACG
66 AGCATGCAGGGGGGGACCGGGCCGATCACCGGCTTGCGCATTCTACCTCTCCAGTA-GCTGAACG
11546551 CCCACACGCTCATTTCGTGGGTTGGCTTAG
130 CCCACACGCTCATTTCGTGGGTTGGCTTAG
11546581 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
11546608 GATACAGAGT
Statistics
Matches: 260, Mismatches: 71, Indels: 27
0.73 0.20 0.08
Matches are distributed among these distances:
157 7 0.03
158 53 0.20
159 191 0.73
160 7 0.03
161 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGAGCAGCAGGATCGAT
AGCATGCAGGGGGGGACCGGGCCGATCACCGGCTTGCGCATTCTACCTCTCCAGTAGCTGAACGC
CCACACGCTCATTTCGTGGGTTGGCTTAG
Found at i:11546993 original size:870 final size:848
Alignment explanation
Indices: 11545185--11547502 Score: 2367
Period size: 870 Copynumber: 2.7 Consensus size: 848
11545175 TGAGTGCACA
* *
11545185 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACGGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* * * * * *
11545250 ATTCCCAGTCTAAGATCAAACCGAACCCAGGGTTGCGGC-GTAGGATCGGCAGCACGCAGAGGGG
66 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTAC-GCAGCAGGATCGGCAGCACGTAG-GGGG
* * * ** * * * **
11545314 ATCGGGTCGATCCTTGGCTTGCTCATTCTGCCTCTCCGACCGGCTTAGCACCCGTACACCTATTT
129 ATCGGGCCGATCC-CGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCACCCGCACACCCGTTT
* * * *
11545379 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAAGGTTATG
193 CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC-GA-CG-AGGTTGTA
* * * * * * * * **
11545444 GCAACGGGACTGACAGGACGCAGAGGGGGATCGGTGCGATCCCTGAG-TTACGTACTATGCCCCT
255 GCAGCAGGACCGA-AGCA-GCAGAGGGGGATC-GAGCGATCCC-G-GCTTGCGCATTATGCTTCT
* * * * *
11545508 ACGACTGGTTCATCACCCGAACACTCGTTTCGGGGGTTGACTTAGGCATACGAAGTTCATTCCCA
315 -CGACT-GCTCATCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * * * * *
11545573 ATCTAAGATCGGGCCAGACCGAGGGATGCGATAGCAAGATCGACAGCACGCA-AGGGGGATCAGG
378 ATCTAAGATCGGACCGGACCGAGGGTTGCGATAGTAGGATCGACAGCACGCAGGGGGGGACCGGG
* * * * * * * * * *
11545637 CCAGTCCCTGGCTTGTGCATTGTGCCTCTCCGATCGACTGAGCACCTGCACGCTCGTTCCATGGG
443 CCGGTCCCCGACTTGCGCATTCTGCCTCTCCG-TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
*
11545702 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATC
507 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * *
11545767 GGATCGGACCGAGGGTTGCAGTAACAGGACAAGCAGCAAGATCGATAGCACGCAGGAAGGGACCA
572 AGACCGGACCGAGGGTT---GT---A-GACAAGCAG--AGATCGATAGCACACAGGAAGGGACCA
* * ** ** *
11545832 GGCCGATCCCTAGCTTGTGCATTCTGCCTCTTCGGTCGACTGAGCACCCGCACGCTCGTTTCGTG
628 GACCGATCCCCAGCTTACGCATTCTGCCTCTTCGACCGACTGAGCACCCGCACGCCCGTTTCGTG
*
11545897 GGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCAGATCGAGGGTTGTGGCAG
693 GGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAG
* * *
11545962 CAGGACCGACAGCGAGATCACCAGCACGAAGAGGGGGACTAGGATAATCCACGGATTACGCATTA
758 CAGGACCGACAGCGAGAGCACCAGCACGAAGAGGGGGACCAGGATAATCCACAGATTACGCATTA
* *
11546027 TGCCTCTCCGGCCGATTGAGCACCCG
823 TGCCTCTCCGACCAATTGAGCACCCG
* * *
11546053 CACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
** *
11546118 ATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACAGCAGCAGGATAGGCAGCACGTAGGGTGG
66 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTAC-GCAGCAGGATCGGCAGCACGTAGGG-GG
* * *
11546183 ACCGGGCCGATCTCCGGCTTGCGCATTCTACCTCTCCGGTCGACTGAGCGCCCGCACACCCGTTT
129 ATCGGGCCGATC-CCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCACCCGCACACCCGTTT
* *
11546248 CGTGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCGAACTGAGGGTTGTA
193 CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG-AC-GA-GGTTGTA
* *
11546313 GCAGCAGGACCGATAGTATGCAGAGGGGGATCGAACTGATCACCGGCTTGCGCATTATGCTTCTC
255 GCAGCAGGACCGA-AGCA-GCAGAGGGGGATCGAGC-GATC-CCGGCTTGCGCATTATGCTTCTC
* * * *
11546378 TGACCTACTCATTGCCC-ATACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
316 -GA-CTGCTCATCGCCCGA-ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * *
11546442 ATCTAAGATCGGACCGGACCGAGGGTTACGATAGTAGGATCGATAGCATGCAGGGGGGGACCGGG
378 ATCTAAGATCGGACCGGACCGAGGGTTGCGATAGTAGGATCGACAGCACGCAGGGGGGGACCGGG
* * * * * *
11546507 CCGGTCCCCGACTTACGCATTCTACCTCTCCAGTAGGCTGAACGCCCACACGCTCATTTCGTGGG
443 CCGGTCCCCGACTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * ** *
11546572 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGGATACAGAGTTTGTTCCCAGTCCAAGATC
507 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
** *
11546637 AGACCGGACCGAGGGTTGT-G-C-AGCAG-GATC-AGTAGCACACAAGGGGGGGGCC-GACTCGA
572 AGACCGGACCGAGGGTTGTAGACAAGCAGAGATCGA-TAGCACAC-AGGAAGGGACCAGAC-CGA
* * **
11546696 TCCCCATCTTACGTATTCTGCCTC-TCTGACCGACTGAGCGGCCGCACGCCCGTTTCGTGGGTTG
634 TCCCCAGCTTACGCATTCTGCCTCTTC-GACCGACTGAGCACCCGCACGCCCGTTTCGTGGGTTG
* * *
11546760 GCTTAGGCATACAGAGTTCATT-CATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCAGGA
698 GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCAGGA
* ** * * * * * * * * *
11546824 CCGGCAGCG-GAAGCGGCAGCATGCATAGGGGGACCGGGCTGATCCCCAGCTTATGCATTATGCC
763 CCGACAGCGAG-AGCACCAGCACGAAGAGGGGGACCAGGATAATCCACAGATTACGCATTATGCC
* *
11546888 TCTCTGACCAACCTCTCTAGCCGGCTGAGCGCTCG
827 TCTCCGACCAA----T-T-G--AGC--A-C-C-CG
* * * **
11546923 CACGCTCGTTTTGTGGGTTGACCTAGTCATACGGAGTTCATCTTCAGTCTAAGCATACGGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* *
11546988 ATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGACAGCAGGATCGGTAGCACGTAAGGGGG
66 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACG-CAGCAGGATCGGCAGCACGT-AGGGGG
* * ** * *
11547053 ATCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTTTGGTC-AGCTGAGCACCCTCACGCCCGTT
129 ATCGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGGTCGA-CTGAGCACCCGCACACCCGTT
* * *
11547117 TCGTGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-C--C---G--G-ACC
192 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGACGAGGTTGTAGC
* * * *
11547173 AGCA-G--C--A-CA-CAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTTTTCGGT
257 AGCAGGACCGAAGCAGCAGAGGGGGATCGAG-CGAT-CCCGGCTTGCGCATTATG-CTTCTC-GA
* * * * * *
11547231 CGGCTCAGCGCCCGAACGCTCGTTTCCTGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTTTA
318 CTGCTCATCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTA
* * * * * *
11547296 AGATCAGATCGGACCGAAGGTTGCGACAGTAGGATCGACAGCACG-TGGGGGGGACCGGGTCGGT
383 AGATCGGACCGGACCGAGGGTTGCGATAGTAGGATCGACAGCACGCAGGGGGGGACCGGGCCGGT
* * * *
11547360 CCCCGACTTGGGCATTCTGCCACTCCGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGC
448 CCCCGACTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGC
11547425 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
512 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
*
11547490 GGAACGAGGGTTG
577 GGACCGAGGGTTG
11547503 CAATAGCTGG
Statistics
Matches: 1211, Mismatches: 199, Indels: 100
0.80 0.13 0.07
Matches are distributed among these distances:
848 143 0.12
849 123 0.10
850 9 0.01
851 1 0.00
852 1 0.00
855 1 0.00
856 2 0.00
857 109 0.09
858 90 0.07
859 1 0.00
860 5 0.00
861 3 0.00
862 2 0.00
863 1 0.00
865 2 0.00
866 1 0.00
867 3 0.00
868 103 0.09
869 262 0.22
870 343 0.28
871 6 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (848 bp):
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGCAGCAGGATCGGCAGCACGTAGGGGGAT
CGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCACCCGCACACCCGTTTCGT
GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGACGAGGTTGTAGCAGCA
GGACCGAAGCAGCAGAGGGGGATCGAGCGATCCCGGCTTGCGCATTATGCTTCTCGACTGCTCAT
CGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGA
CCGGACCGAGGGTTGCGATAGTAGGATCGACAGCACGCAGGGGGGGACCGGGCCGGTCCCCGACT
TGCGCATTCTGCCTCTCCGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
CGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
GTTGTAGACAAGCAGAGATCGATAGCACACAGGAAGGGACCAGACCGATCCCCAGCTTACGCATT
CTGCCTCTTCGACCGACTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACAGAGTT
CATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCAGGACCGACAGCGAGAGCACCA
GCACGAAGAGGGGGACCAGGATAATCCACAGATTACGCATTATGCCTCTCCGACCAATTGAGCAC
CCG
Found at i:11546996 original size:26 final size:26
Alignment explanation
Indices: 11546950--11547001 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11546940 TTGACCTAGT
*
11546950 CATACGGAGTTCATCTTCAGTCTAAG
1 CATACGGAGTTCATCTCCAGTCTAAG
11546976 CATACGGAGTTCAT-TCCCAGTCTAAG
1 CATACGGAGTTCATCT-CCAGTCTAAG
11547002 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATCTCCAGTCTAAG
Found at i:11547465 original size:26 final size:26
Alignment explanation
Indices: 11547429--11547481 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11547419 GTTGGCTTAG
11547429 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11547455 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11547481 G
1 G
11547482 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11547831 original size:158 final size:158
Alignment explanation
Indices: 11547523--11547970 Score: 504
Period size: 158 Copynumber: 2.8 Consensus size: 158
11547513 ACCAATAGCA
* * * * **
11547523 AGATCGGCAGCACGCAGGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTTTGCCTCTCCGGTCG
1 AGATCGGCAGCACGCA-GGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCG
* * * ** * *
11547588 GCTGAACGCCCGCACGCTCGTTCCATGGGTTGACTTATACATACGAAGTTCATTCCTTGTCTAAG
65 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
** * * *
11547653 ATCGAACCAGACCGAAGGTTGCGGCAGC-
130 CCCCAACCAAACCGAAGGTTGCGGCAACG
* * * *
11547681 AGGGTCGGCAGCACGTAGGGGGGACCGAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCG
1 A-GATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCG
* * ** * *
11547746 GCTGAGTGCCCGTATACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
65 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * *
11547811 CCCCAGCCAAACCGAGGGTTGTGGCAACG
130 CCCCAACCAAACCGAAGGTTGCGGCAACG
* * * * * *
11547840 AGACCGGCAGCACGCAGAGGGGGACCGGGCTGATCCCCGACTTGTGCATTCTACCTCTCCAACCG
1 AGATCGGCAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCG
*
11547905 GCTGAGCGCCCGCACGCTTGTTTCGA-GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
65 GCTGAGCGCCCGCACGCTCGTTTC-ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
11547969 GC
129 GC
11547971 ATATGGAGTT
Statistics
Matches: 238, Mismatches: 48, Indels: 7
0.81 0.16 0.02
Matches are distributed among these distances:
158 126 0.53
159 111 0.47
160 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (158 bp):
AGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGG
CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
CCCAACCAAACCGAAGGTTGCGGCAACG
Found at i:11547846 original size:355 final size:353
Alignment explanation
Indices: 11547174--11547823 Score: 831
Period size: 355 Copynumber: 1.8 Consensus size: 353
11547164 AGCCGGACCA
* * * *
11547174 GCAGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTTTTCGGTCGGCTCAG
1 GCAGCACACAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAA
* * *
11547239 CGCCCGAACGCTCGTTTCCTGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTTTAAGATCAGA
66 CGCCCGAACGCTCGTTTCCTGGGTTGACTTAGACATAAGAAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * *
11547304 TCGGACCGAAGGTTGCGACAGTAGGATCGACAGCACGTGGGGGGGACCGGGTCGGTCCCCGACTT
131 CCAGACCGAAGGTTGCGACAGCAGGATCGACAGCACGTAGGGGGGACCGAGCCGATCCCCGACTT
** * * * *
11547369 GGGCATTCTGCCACTCCGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
196 GCACATTCTGCCACTCCGACCGGCTGAGTGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATA
** * ** *
11547434 CGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAACGAGG
261 CGGAGTTCATTCCATGTCTAAGC--ACCCAGTCCAAACCCAGTCTAAGAACAGACCGGAACGAGG
11547499 GTTGCAATAGCTGGACCAATAGCAAGATCG
324 GTTGCAATAGCTGGACCAATAGCAAGATCG
* * * * * *
11547529 GCAGCACGCAGGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTTTGCCTCTCCGGTCGGCTGAA
1 GCAGCACACAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAA
* * * **
11547594 CGCCCGCACGCTCG-TTCCATGGGTTGACTTATACATACGAAGTTCATTCCTTGTCTAAGATC-G
66 CGCCCGAACGCTCGTTTCC-TGGGTTGACTTAGACATAAGAAGTTCATTCCCAGTCTAAGATCAG
* * * *
11547657 AACCAGACCGAAGGTTGCGGCAGCAGGGTCGGCAGCACGTAGGGGGGACCGAGCCGATCCCCGGC
130 -ACCAGACCGAAGGTTGCGACAGCAGGATCGACAGCACGTAGGGGGGACCGAGCCGATCCCCGAC
* * *
11547722 TTGCACATTCTGCCTCTCCGACCGGCTGAGTGCCCGTATACCCGTTTCATGGGTTGGCTTAGGCA
194 TTGCACATTCTGCCACTCCGACCGGCTGAGTGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCA
*
11547787 TAGGGAGTTCATTCCATGTCTAAGC-CCCAG-CCAAACC
259 TACGGAGTTCATTCCATGTCTAAGCACCCAGTCCAAACC
11547824 GAGGGTTGTG
Statistics
Matches: 249, Mismatches: 44, Indels: 8
0.83 0.15 0.03
Matches are distributed among these distances:
351 4 0.02
352 3 0.01
354 5 0.02
355 237 0.95
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.22
Consensus pattern (353 bp):
GCAGCACACAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAA
CGCCCGAACGCTCGTTTCCTGGGTTGACTTAGACATAAGAAGTTCATTCCCAGTCTAAGATCAGA
CCAGACCGAAGGTTGCGACAGCAGGATCGACAGCACGTAGGGGGGACCGAGCCGATCCCCGACTT
GCACATTCTGCCACTCCGACCGGCTGAGTGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATA
CGGAGTTCATTCCATGTCTAAGCACCCAGTCCAAACCCAGTCTAAGAACAGACCGGAACGAGGGT
TGCAATAGCTGGACCAATAGCAAGATCG
Found at i:11548739 original size:26 final size:26
Alignment explanation
Indices: 11548709--11548761 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11548699 GTTGACTTAG
* *
11548709 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
11548735 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
11548761 G
1 G
11548762 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:11550581 original size:26 final size:26
Alignment explanation
Indices: 11550503--11550569 Score: 107
Period size: 26 Copynumber: 2.6 Consensus size: 26
11550493 GTTGGCTTAG
*
11550503 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
11550529 GCATATGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11550555 GCATACGGAGTTCAT
1 GCATACGGAGTTCAT
11550570 TCCTAGTGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11551105 original size:26 final size:26
Alignment explanation
Indices: 11551068--11551120 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11551058 GTTGGCTTTG
*
11551068 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
11551094 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
11551120 G
1 G
11551121 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:11552152 original size:159 final size:158
Alignment explanation
Indices: 11551830--11552282 Score: 358
Period size: 159 Copynumber: 2.9 Consensus size: 158
11551820 AGACTGGATC
* * * * * * * * *
11551830 GAGGGTTGC-GACAGCAGGATTGGCAGCACGTAGGGGGGATCGGGTCGATCCCCGACTTGCGCAT
1 GAGGGTTGCAG-CAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCTCTGACTTGCACAT
* * * * ** * * * * *
11551894 TCTGCCTCTCCAGTTGGCTGAGTGCCCTCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGT
65 TATGCCTCTCCAGTAGGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTCAGGCATACGGAGT
* ** *** *
11551959 TCATT-CCATGTCTAAGCCCCAG-CTGGACC
130 TCATTCCCA-GTGTAAG-ATCAGACCAAACT
* ** ** * * *
11551988 AAGGGTTGTGGCAGCAGGA-CTGGTAGCATGCAGAGGGGGACCGAGTCGATC-CTTGGCTTGCAC
1 GAGGGTTGCAGCAGCAGGATC-GACAGCACGCAG-GGGGGACCGAGCCGATCTC-TGACTTGCAC
*** * * * *
11552051 ATTATGCCTCTTTGGTTGGCTCAGCGCCCGAACGCTCGTTTTATGGGTTGACTTATGCATACGGA
63 ATTATGCCTCTCCAGTAGGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTCAGGCATACGGA
11552116 GTTCATTCCCAGTGTAAGATCAGACCAAACT
128 GTTCATTCCCAGTGTAAGATCAGACCAAACT
* * * * *
11552147 GAGGGTTGCAGTAGTAGGATCGACAGCACGCAGGGGGGACTGGGCCGATCTCTGACTTGCGCATT
1 GAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCTCTGACTTGCACATT
* * * *
11552212 CTGCCTCTCCAGTAGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTCAGGCATACGGAGTT
66 ATGCCTCTCCAGTAGGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTCAGGCATACGGAGTT
11552277 CATTCC
131 CATTCC
11552283 ATGTCTAAGC
Statistics
Matches: 231, Mismatches: 56, Indels: 16
0.76 0.18 0.05
Matches are distributed among these distances:
158 113 0.49
159 114 0.49
160 4 0.02
ACGTcount: A:0.18, C:0.25, G:0.32, T:0.25
Consensus pattern (158 bp):
GAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCTCTGACTTGCACATT
ATGCCTCTCCAGTAGGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTCAGGCATACGGAGTT
CATTCCCAGTGTAAGATCAGACCAAACT
Found at i:11552795 original size:158 final size:154
Alignment explanation
Indices: 11552609--11553062 Score: 389
Period size: 158 Copynumber: 2.9 Consensus size: 154
11552599 ACACATTCTG
* * ** * * **
11552609 CCTCTCCGACCGGCTGAGCGCTTGCACGCCCGTTTCACATTTTGGCTTACACATAGGGAGTTCAT
1 CCTCTCCGGCCGGCTAAGCGCCCGCACGCTCGTTTCGCA--TTGGCTTAGGCATAGGGAGTTCAT
* *
11552674 TCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGGGGA
64 TCCA-GTCTAAGCACCAG-CGGACCGAGGGTTGTGGCAGCGGGACTGACAGCACGCAGAGGGGGA
*
11552739 CCGGG-CTTATC-CTCGACTGT-GCATTATA
127 CCGGGTC-GATCTC-CGACT-TAGCATTATA
* * *
11552767 CCTCTCCGGCCGGCTCAGCACCCGCACGCTCGTTTCGTGCATTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCCGGCCGGCTAAGCGCCCGCACGCTCGTTTC--GCATTGGCTTAGGCATAGGGAGTTCAT
* * * * **
11552832 TCCCAGTCTAAG-ATCGGACCAGACCGAGGGTTGCGGCAGCAAGA-TAGACAGCACGCA-AGGGG
64 T-CCAGTCTAAGCA-C-CAGCGGACCGAGGGTTGTGGCAGCGGGACT-GACAGCACGCAGAGGGG
* * *
11552894 GACCGGGTCGATCTCCGGCTTACGCATTCTG
125 GACCGGGTCGATCTCCGACTTA-GCATTATA
* * * ** **
11552925 CCTCTTCGGCCGGCTAAGCGCCCGTAGGCTCGTTTCGTGGGTTAACTTAGGCATAGGGAGTTCAT
1 CCTCTCCGGCCGGCTAAGCGCCCGCACGCTCGTTTC--GCATTGGCTTAGGCATAGGGAGTTCAT
* * * *
11552990 TCCAAGTCTAAGCTCCAGCGGAACAGAGGGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGA
64 TCC-AGTCTAAGCACCAGCGG-ACCGAGGGTTGTGGCAGCGGGACTGACAGCACGCAGAGGGGGA
*
11553055 CCAGGTCG
127 CCGGGTCG
11553063 CATGCTTGTT
Statistics
Matches: 238, Mismatches: 43, Indels: 29
0.77 0.14 0.09
Matches are distributed among these distances:
156 1 0.00
157 25 0.11
158 192 0.81
159 18 0.08
160 2 0.01
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (154 bp):
CCTCTCCGGCCGGCTAAGCGCCCGCACGCTCGTTTCGCATTGGCTTAGGCATAGGGAGTTCATTC
CAGTCTAAGCACCAGCGGACCGAGGGTTGTGGCAGCGGGACTGACAGCACGCAGAGGGGGACCGG
GTCGATCTCCGACTTAGCATTATA
Found at i:11553390 original size:11 final size:11
Alignment explanation
Indices: 11553374--11553412 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
11553364 GGCACCATTG
11553374 CCGGAGCATCA
1 CCGGAGCATCA
*
11553385 CCGGAGCATCG
1 CCGGAGCATCA
* *
11553396 CCGAAGCGTCA
1 CCGGAGCATCA
11553407 CCGGAG
1 CCGGAG
11553413 AACCTAACCG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.23, C:0.36, G:0.33, T:0.08
Consensus pattern (11 bp):
CCGGAGCATCA
Found at i:11555223 original size:26 final size:26
Alignment explanation
Indices: 11555180--11555251 Score: 108
Period size: 26 Copynumber: 2.8 Consensus size: 26
11555170 TAGGCACACG
*
11555180 GAGTTCATCCCCAGTCTAAGCATACA
1 GAGTTCATCCCCAATCTAAGCATACA
*
11555206 GAGTTCATCTCCAATCTAAGCATACA
1 GAGTTCATCCCCAATCTAAGCATACA
* *
11555232 GAGTTCATTCCCAGTCTAAG
1 GAGTTCATCCCCAATCTAAG
11555252 ATCAGACCAG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GAGTTCATCCCCAATCTAAGCATACA
Found at i:11555557 original size:159 final size:159
Alignment explanation
Indices: 11555355--11555728 Score: 432
Period size: 158 Copynumber: 2.4 Consensus size: 159
11555345 GCTGAGCGTT
* * * *
11555355 CGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCG
1 CGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCA
* * * ** * *
11555419 GACCGAAGGTTGTGGCAGCGGGACCGGTAGCATGCAGAGAGGGATCGGGCCGATCCCTGGCTTGC
66 AACCGAAGGTTGTGGCAGCAGGACCGATAGCACACAG-GAGGGACCGGGCCGATCCCCGGCTTGC
*
11555484 GCATTATGCCTTTTCGACCGGCTCAACGCC
130 GCATTATGCCTTTTCGACCAGCTCAACGCC
* * * * *
11555514 CGCACACTCGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCC-TAGTCTCAG-ATCAGATC
1 CGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGATC
* * * * * * *
11555577 AAACTGAGGGTTGTGGTAGCAGGATCGATAGCACACAGGGGGGACCGGGTCGGTCCCCGGCTTGC
65 AAACCGAAGGTTGTGGCAGCAGGACCGATAGCACACAGGAGGGACCGGGCCGATCCCCGGCTTGC
* * * **
11555642 GCATTCTGCCTTTTCGACCAGTTGAGTGCC
130 GCATTATGCCTTTTCGACCAGCTCAACGCC
11555672 CGCACGA-TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CGCAC-ACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
11555729 TATGAAGTTC
Statistics
Matches: 177, Mismatches: 33, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
158 97 0.55
159 80 0.45
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
CGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCA
AACCGAAGGTTGTGGCAGCAGGACCGATAGCACACAGGAGGGACCGGGCCGATCCCCGGCTTGCG
CATTATGCCTTTTCGACCAGCTCAACGCC
Found at i:11556127 original size:26 final size:26
Alignment explanation
Indices: 11556079--11556129 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11556069 GTTCACCTAG
*
11556079 GCATACGGAGTTCATCCATAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
11556105 GCATACGGAGTTCATTCC-CAGTCTA
1 GCATACGGAGTTCA-TCCACAGTCTA
11556130 TGATCGGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:11556609 original size:26 final size:26
Alignment explanation
Indices: 11556580--11556632 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11556570 GTTGGCTTAG
11556580 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
11556606 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
11556632 G
1 G
11556633 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:11556975 original size:158 final size:158
Alignment explanation
Indices: 11556685--11557051 Score: 418
Period size: 158 Copynumber: 2.3 Consensus size: 158
11556675 GTGCCGCATG
* * **
11556685 CTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAG
1 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGTCAAACCGAG
* * * * *
11556750 GGTTGTGGCAGCGGGACCGGTAGCATGCAGAGGGGATCGGGCCGATCCCTGGCTTGCGCATTATG
66 GGTTGTGGCAGCAGGACCGATAGCACGCAGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATG
* * *
11556815 CCTCTCCGATCGGCTCAGCGCTCGCAC-A
131 CCT-TCCGACCAGCTCAGCGCCCGCACGA
* * * *
11556843 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTCAG-ATCAGATCAAACTG
1 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAG-TCAAACCG
* * * * * *
11556906 AGGGTTGTGGTAGCAGGATCGATAGCACGCAGGGGGGACCGGGTCGGTCCCCGGCTTGCGCATTC
64 AGGGTTGTGGCAGCAGGACCGATAGCACGCAGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTA
* * * *
11556971 TGCCTTTCGACCAGTTGAGTGCCCGCACGGA
129 TGCCTTCCGACCAGCTCAGCGCCCGCAC-GA
* *
11557002 -TCATTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCA
1 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
11557052 TATGGAGTTC
Statistics
Matches: 173, Mismatches: 30, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
157 20 0.12
158 150 0.87
159 3 0.02
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.25
Consensus pattern (158 bp):
CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGTCAAACCGAG
GGTTGTGGCAGCAGGACCGATAGCACGCAGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATG
CCTTCCGACCAGCTCAGCGCCCGCACGA
Found at i:11557058 original size:26 final size:26
Alignment explanation
Indices: 11557020--11557075 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
11557010 TGGGTTGGCT
11557020 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
*
11557046 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
11557072 TAAG
1 TAAG
11557076 ATCAGGCCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:11557075 original size:443 final size:444
Alignment explanation
Indices: 11556243--11557076 Score: 1111
Period size: 443 Copynumber: 1.9 Consensus size: 444
11556233 CCTACACGTC
* * **
11556243 CGTTGCGTGGGTTTGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAGCCAGATTGAGGG
1 CGTTGCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
* * * *
11556308 TTGTGGCAGTGGGACTGACAGCACACAGAAGGGGACTAGGTCGATCCCTGGCTTGTGCATTATGA
66 TTGTGGCAGCGGGACCGACAGCACACAGAAGGGGACTAGGCCGATCCCTGGCTTGCGCATTATGA
*
11556373 CTCTCCGATCGGCTCAACGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATT
131 CTCTCCGATCGGCTCAACGCCCGAACACTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATT
* * * *
11556438 CCCAGTCTAAGATCGGATCGAATCGAAGGTTGCAGCAGCCAGATCGATAACACGCATGAGGGATC
196 CCCAGTCTAAGATCAGATCAAATCGAAGGTTGCAGCAGCCAGATCGATAACACGCAGGAGGGACC
*** * *
11556503 GAGCCAGTCCCCAGCTTGCGCATTCTACCTCTCCGGTTAGCTGAGCACCCACACGCTCGTTCCAT
261 GAGCCAGTCCCCAGCTTGCGCATTCTACCTCTCCGACCAGCTGAGCACCCACACGATCATTCCAT
* *
11556568 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCTAGTCTAAG
326 GGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAG
11556633 AGTTTGAGCCACGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATGCT
391 AGTTTGAGCCACGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATGCT
* * *
11556687 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGG
1 CGTTGCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
** ** *
11556752 TTGTGGCAGCGGGACCGGTAGCATGCAG-AGGGGA-TCGGGCCGATCCCTGGCTTGCGCATTATG
66 TTGTGGCAGCGGGACCGACAGCACACAGAAGGGGACT-AGGCCGATCCCTGGCTTGCGCATTATG
* * * * * *
11556815 CCTCTCCGATCGGCTCAGCGCTCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
130 ACTCTCCGATCGGCTCAACGCCCGAACACTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCAT
* * * ** * * *
11556880 TCCTAGTCTCAGATCAGATCAAA-CTGAGGGTTGTGGTAG-CAGGATCGATAGCACGCAGGGGGG
195 TCCCAGTCTAAGATCAGATCAAATC-GAAGGTTGCAGCAGCCA-GATCGATAACACGCAGGAGGG
* * * * * * * ** *
11556943 ACCGGGTCGGTCCCCGGCTTGCGCATTCTGCCT-TTCGACCAGTTGAGTGCCCGCACGGATCATT
258 ACCGAGCCAGTCCCCAGCTTGCGCATTCTACCTCTCCGACCAGCTGAGCACCCACAC-GATCATT
* *
11557007 TCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTC
322 CCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTC
11557072 TAAGA
387 TAAGA
11557077 TCAGGCCGGA
Statistics
Matches: 332, Mismatches: 54, Indels: 9
0.84 0.14 0.02
Matches are distributed among these distances:
442 19 0.06
443 233 0.70
444 80 0.24
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.25
Consensus pattern (444 bp):
CGTTGCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
TTGTGGCAGCGGGACCGACAGCACACAGAAGGGGACTAGGCCGATCCCTGGCTTGCGCATTATGA
CTCTCCGATCGGCTCAACGCCCGAACACTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATT
CCCAGTCTAAGATCAGATCAAATCGAAGGTTGCAGCAGCCAGATCGATAACACGCAGGAGGGACC
GAGCCAGTCCCCAGCTTGCGCATTCTACCTCTCCGACCAGCTGAGCACCCACACGATCATTCCAT
GGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAG
AGTTTGAGCCACGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATGCT
Found at i:11558111 original size:184 final size:182
Alignment explanation
Indices: 11557724--11558461 Score: 675
Period size: 184 Copynumber: 4.0 Consensus size: 182
11557714 GTTGACTTAG
* * * * ** * **
11557724 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGATAGCAAGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGGTA
* * * * * * * * ** * *
11557789 GGACGCAGGGGGGGACCGGG-CTGGTCCCCGACTTACGCATTCTACCTCTCTGGCCAGCTAAGCG
66 GCATGCA--GGGGGACCGGGTC-GATCCCAG-CTTGCACATTCTGCCTCTCCGATCGGCTGAGCG
* * * * * * * *
11557853 CCCGGATGCTCGTTTCATGGGTTGGCTTAGGCAGACGGAGTACAT-TCCATGTCTAA
127 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATCCCCA-GTCTAA
* * * **
11557909 GCATACGAAGTTCATTCCTAGTCTAAGATCAGATCGGACTGAGGGTTACGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGGTA
* * * *
11557974 GCACGCAGGAGGGACCGGGTCGATCGCCAGCTTGCACATTCTGCCTCTCCAATCGGTTCAGCGCC
66 GCATGCAGG-GGGACCGGGTCGATC-CCAGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCC
* * * *
11558039 CGCACGCTCGTTTCGTGGGTTGACTTACGCATACGAAGTTTATCCCCAGTCTAA
129 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATCCCCAGTCTAA
* * * * *
11558093 GCATACGGAGTGCATTCCTAGTCTAAGATC-GAATCAGACCGAGGGTTGCGGCAACATGATCGGT
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAG-ATCGGACTGAGGGTTGCGGCAGCAGGATCGGT
* * *
11558157 AGCATGCAGGGGGGACCGGG-CTGATCCCCGACTTACACATTCTGCCTCTCCGGTCGGCTGAGCG
65 AGCATGCA-GGGGGACCGGGTC-GATCCCAG-CTTGCACATTCTGCCTCTCCGATCGGCTGAGCG
11558221 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAC-AGAGTTCATCCCCAGTCTAA
127 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGA-AGTTCATCCCCAGTCTAA
** *
11558277 GCATATAGAGTTCATTCC-AGTCTAAGATCAGA-CTGGA-TCGAGGGTTGCGGTAGCAGGATCGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATC-GGACT-GAGGGTTGCGGCAGCAGGATCGG
* * ** * *
11558339 TAGCATGCAGGGGGCACTGGGTCGATTTCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGATCG
64 TAGCATGCAGGGGG-ACCGGGTCGA-TCCCAGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCG
* * * * * *
11558404 CCCGCATGCCCGTTTCGTTGGTTGGCTTGGGCATAGGGAGTTCAT-TCCATGTCTAA
127 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATCCCCA-GTCTAA
11558460 GC
1 GC
11558462 CCAAGTTGGA
Statistics
Matches: 462, Mismatches: 74, Indels: 36
0.81 0.13 0.06
Matches are distributed among these distances:
182 9 0.02
183 134 0.29
184 247 0.53
185 72 0.16
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (182 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGGTA
GCATGCAGGGGGACCGGGTCGATCCCAGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCCCG
CACGCCCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATCCCCAGTCTAA
Found at i:11558302 original size:25 final size:26
Alignment explanation
Indices: 11558251--11558302 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11558241 GTTGGCTTAG
11558251 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
11558277 GCATATAGAGTTCAT-TCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11558302 G
1 G
11558303 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11558461 original size:367 final size:369
Alignment explanation
Indices: 11557724--11558427 Score: 855
Period size: 368 Copynumber: 1.9 Consensus size: 369
11557714 GTTGACTTAG
* * * * * *
11557724 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGATAGCAAGATCGACA
1 GCATACGAAGTGCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAACAAGATCGACA
* * * *
11557789 GGACGCAGGGGGGGACCGGGCTGGTCCCCGACTTACGCATTCTACCTCTCTGGCCAGCTAAGCGC
66 GCACGCAGGGGGGGACCGGGCTGATCCCCGACTTACACATTCTACCTCTCCGGCCAGCTAAGCGC
* * * * * *
11557854 CCGGATGCTCGTTTCATGGGTTGGCTTAGGCAGACGGAGTACATTCCATGTCTAAGCATACGAAG
131 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCAGACAGAGTACATCCCATGTCTAAGCATAAGAAG
*
11557919 TTCATTCCTAGTCTAAGATCAGATCGGACTGAGGGTTACGGCAGTAGGATCGACAGCACGCAGGA
196 TTCATTCCTAGTCTAAGATCAGATCGGACTGAGGGTTACGGCAGCAGGATCGACAGCACGCAGGA
* *
11557984 GGGACCGGGTCGATCGCCAGCTTGCACATTCTGCCTCTCCAATCGGTTCAGCGCCCGCACGCTCG
261 GGGACCGGGTCGATCGCCAGCTTGCACATTCTGCCTCTCCAATCGGCTCAGCGCCCGCACGCCCG
*
11558049 TTTCGTGGGTTGACTTACGCATACGAAGTTTATCCCCAGTCTAA
326 TTTCGTGGGTTGACTTACGCATACGAAGTTCATCCCCAGTCTAA
* * * * * **
11558093 GCATACGGAGTGCATTCCTAGTCTAAGATCGAATCAGACCGAGGGTTGCGGCAACATGATCGGTA
1 GCATACGAAGTGCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAACAAGATCGACA
* * * * *
11558158 GCATGCA-GGGGGGACCGGGCTGATCCCCGACTTACACATTCTGCCTCTCCGGTCGGCTGAGCGC
66 GCACGCAGGGGGGGACCGGGCTGATCCCCGACTTACACATTCTACCTCTCCGGCCAGCTAAGCGC
* * *
11558222 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATATAG-
131 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCAGACAGAGTACAT-CCCATGTCTAAGCATA-AGA
* * ** *
11558285 AGTTCATTCC-AGTCTAAGATCAGA-CTGGA-TCGAGGGTTGCGGTAGCAGGATCGGTAGCATGC
194 AGTTCATTCCTAGTCTAAGATCAGATC-GGACT-GAGGGTTACGGCAGCAGGATCGACAGCACGC
* ** ** * * * * *
11558347 AGG-GGGCACTGGGTCGATTTCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGATCGCCCGCAT
257 AGGAGGG-ACCGGGTCGATCGCCAGCTTGCACATTCTGCCTCTCCAATCGGCTCAGCGCCCGCAC
*
11558411 GCCCGTTTCGTTGGTTG
321 GCCCGTTTCGTGGGTTG
11558428 GCTTGGGCAT
Statistics
Matches: 280, Mismatches: 50, Indels: 12
0.82 0.15 0.04
Matches are distributed among these distances:
366 5 0.02
367 106 0.38
368 108 0.39
369 61 0.22
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (369 bp):
GCATACGAAGTGCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAACAAGATCGACA
GCACGCAGGGGGGGACCGGGCTGATCCCCGACTTACACATTCTACCTCTCCGGCCAGCTAAGCGC
CCGCACGCCCGTTTCATGGGTTGGCTTAGGCAGACAGAGTACATCCCATGTCTAAGCATAAGAAG
TTCATTCCTAGTCTAAGATCAGATCGGACTGAGGGTTACGGCAGCAGGATCGACAGCACGCAGGA
GGGACCGGGTCGATCGCCAGCTTGCACATTCTGCCTCTCCAATCGGCTCAGCGCCCGCACGCCCG
TTTCGTGGGTTGACTTACGCATACGAAGTTCATCCCCAGTCTAA
Found at i:11558790 original size:26 final size:26
Alignment explanation
Indices: 11558751--11558829 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
11558741 GTTGGCCTAG
11558751 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
11558777 GCGTACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
11558803 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
11558829 G
1 G
11558830 ATCAGACCGG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 46 0.94
27 3 0.06
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:11559009 original size:26 final size:26
Alignment explanation
Indices: 11558973--11559025 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11558963 GTTGACATAG
*
11558973 GCATACGGAGTTC-TTCACTAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
*
11558999 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11559025 G
1 G
11559026 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11560085 original size:26 final size:26
Alignment explanation
Indices: 11560039--11560089 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11560029 TGACTTAGGC
*
11560039 ATACGGAGTTCATCCTTAGTCTAAGT
1 ATACGGAGTTCATCCTCAGTCTAAGT
11560065 ATACGGAGTTCATTCC-CAGTCTAAG
1 ATACGGAGTTCA-TCCTCAGTCTAAG
11560090 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATCCTCAGTCTAAGT
Found at i:11560418 original size:155 final size:152
Alignment explanation
Indices: 11560065--11560422 Score: 350
Period size: 154 Copynumber: 2.3 Consensus size: 152
11560055 TAGTCTAAGT
* * *
11560065 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTACGATAGTAGGATCGGTAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTGCGATAGTAGGATC-G-AGC
* * * * * *
11560130 ACGTAGGAGGGATCGGGCCGATCCCCGTCTTGCACATTCTGCTCTCCGACCGTCTGAGCACCCGC
64 ACGCAGAAGGGATCGAGCCGATCCCCGTCTTGCACATTATGCTCTCCGACCGGCTCAGCACCCGC
* * *
11560195 AGCCGTTTCGTGGTTTGCTTAGGC
129 AACCGGTTCGTGGGTTGCTTAGGC
* ** * * * * *
11560219 ATAGGGAGTTTCATT-CCATGTCTAAGCCCCAG-T-TGATCGAGGGTTGTGGTAGTGGGA-C-AG
1 ATACGGAG-TTCATTCCCA-GTCTAAG-ATCAGATCGGATCAAGGGTTGCGATAGTAGGATCGAG
* ** *
11560279 CACGCAGAAGGGGATCGAGCCGATCCCCAG-CTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGC
63 CACGCAGAA-GGGATCGAGCCGATCCCC-GTCTTGCACATTATG-CTCTCCGACCGGCTCAGCAC
11560343 CCGCACACTCGGTTCGTGGGTTGACTTAGGC
125 CCGCA-AC-CGGTTCGTGGGTTG-CTTAGGC
*
11560374 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGA
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTGCGA
11560423 CAGCAGGACC
Statistics
Matches: 160, Mismatches: 32, Indels: 23
0.74 0.15 0.11
Matches are distributed among these distances:
150 9 0.06
151 28 0.17
152 21 0.13
153 5 0.03
154 54 0.34
155 41 0.26
156 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (152 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTGCGATAGTAGGATCGAGCAC
GCAGAAGGGATCGAGCCGATCCCCGTCTTGCACATTATGCTCTCCGACCGGCTCAGCACCCGCAA
CCGGTTCGTGGGTTGCTTAGGC
Found at i:11560727 original size:171 final size:170
Alignment explanation
Indices: 11560274--11560735 Score: 472
Period size: 170 Copynumber: 2.7 Consensus size: 170
11560264 GTGGTAGTGG
* * *
11560274 GACAGCACGCAGAA-GGGGATCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTC
1 GACAGCAC-CA-AAGGGGGATCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTG
** * * * *
11560338 AGCGCCCGCACACTCGGTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
64 AGCGCCCGCATGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCA
*
11560403 GATCGGACCAAGGGTTGCGACAGCAGGACCAGCAGCAGGATC
129 GATCGGACCAAGGGTTGCGACAGCAGGACCAGAAGCAGGATC
** ** * * * * ** *
11560445 GGTAGCACGTAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTATCTCTCCGGCCGGTTGAG
1 GACAGCACCAAAGGGGGATCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAG
* * * *
11560510 C-ACC-CATGCGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-TCATGTCTAAGCCC
66 CGCCCGCAT--GCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGACC
* * *
11560572 TAG-TCGGACCGAGGGTTGTGGCAGCAGGACC-GAAAGC-GAGATC
128 -AGATCGGACCAAGGGTTGCGACAGCAGGACCAG-AAGCAG-GATC
* * **
11560615 GACAGCACACAAAGGGGGATC-AGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCAACCGGCTG
1 GACAGCAC-CAAAGGGGGATCGA-GCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTG
* *
11560679 AGCGCCCGCATGCTTGTTTAATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
64 AGCGCCCGCATGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
11560736 AAAGCATACG
Statistics
Matches: 231, Mismatches: 48, Indels: 24
0.76 0.16 0.08
Matches are distributed among these distances:
168 2 0.01
169 7 0.03
170 125 0.54
171 90 0.39
172 4 0.02
173 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (170 bp):
GACAGCACCAAAGGGGGATCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAG
CGCCCGCATGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGA
TCGGACCAAGGGTTGCGACAGCAGGACCAGAAGCAGGATC
Found at i:11561395 original size:26 final size:26
Alignment explanation
Indices: 11561359--11561411 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11561349 GTTGACTTAG
*
11561359 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
11561385 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11561411 G
1 G
11561412 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11562906 original size:157 final size:157
Alignment explanation
Indices: 11562453--11563605 Score: 753
Period size: 159 Copynumber: 7.1 Consensus size: 157
11562443 CTAAACAAAT
* * * ** *
11562453 GGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATTGGCGGCACG
1 GGAGTTCATT-CCATGTCTAAGATTAGACCAGACCGAGGGTTGCGACAGCAGGATCGGTAGCATG
* * *
11562517 CAGGAGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCCCGCAC
65 CAGGA-GGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTCAGCGCCCGCAC
* * *
11562582 ACCCGTTTCATGGGTTGGCTTAGGCATAG
129 GCTCGTTTCATGGGTTGGCTTAGGCATAC
* ** * * * ** * * *
11562611 GGAGTTCATTCCATGTCCAAGCCCTAG-CCAGACCGACGGTTGTGGCAGTGGGA-CCGTCGGCAC
1 GGAGTTCATTCCATGTCTAAG-ATTAGACCAGACCGAGGGTTGCGACAGCAGGATCGGT-AGCAT
* * * * *
11562674 GCAGAGAGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGGTCAGCACCCGA
64 GCAG-GA-GGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTCAGCGCCCGC
* **
11562739 ACGCTTGTTTCATGGGTTCACTTAGGCATAC
127 ACGCTCGTTTCATGGGTTGGCTTAGGCATAC
* * *
11562770 GGAGTTCATTTCCA-GTCTAAGATTAGACCAGACCGACGGTTGCGATAGCAGGATCGATAGCATG
1 GGAGTTCA-TTCCATGTCTAAGATTAGACCAGACCGAGGGTTGCGACAGCAGGATCGGTAGCATG
* * * * * * *
11562834 CAGGAGGACCAGGCCGGTCCCCGACTTGCACATTCTGCCTCTCCGATCGGTTCAGCGCCCGCACG
65 CAGGAGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTCAGCGCCCGCACG
*
11562899 CTTGTTTCATGGGTTGGCTTAGGCATAC
130 CTCGTTTCATGGGTTGGCTTAGGCATAC
* ** * * *
11562927 GGAGTTCATTCCATGTCTATGCCCTAG-CCGGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACG
1 GGAGTTCATTCCATGTCTAAG-ATTAGACCAGACCGAGGGTTGCGACAGCAGGATCGGTAGCA--
* * * * * *** * * **
11562991 TGGAGGGGGATCGGGTCGATCCTTGACTTGCGCATTAAACCTCTCCGATCGGCTCAACGTCCATA
63 TGCAGGAGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTCAGCGCCCGCA
* ** * *
11563056 CGCTCATTTTGTGGGTTGACTTAGGCATAT
128 CGCTCGTTTCATGGGTTGGCTTAGGCATAC
* * * *
11563086 GGAATTCATTCCCA-GTCTAAGATCAGACCAGACTGAGGGTTGC-AGCAGCAGGATTGGTAGCAT
1 GGAGTTCATT-CCATGTCTAAGATTAGACCAGACCGAGGGTTGCGA-CAGCAGGATCGGTAGCAT
* * * * * * * * * *
11563149 GGAGG-GGAACTGAGTCGATCCCTGGCTTGCACATTCTGCCTCTCCGGTCGGTTGAGCACCCGTA
64 GCAGGAGGATC-GGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTCAGCGCCCGCA
*
11563213 CGCTCGTTTCGTGGGTTGGCTTAGGCATAC
128 CGCTCGTTTCATGGGTTGGCTTAGGCATAC
* ** ** * * * * * *
11563243 GGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCTGTCTAAGATCGAACCATACCAAAGG
1 GGAGTTCATTCCATGTCTAAG-AT---TAGACCA-GACC-G---AGGGTTG--CGACAGC--AGG
* * * * *
11563308 TTGCGGTAGCAAGATCAGCAGCACACAGGGGGATTGGGCCGATCCCCGGCTTGCTCATTCTGCCT
53 AT-CGGTAGC---AT-----G----CAGGAGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCT
* * * *
11563373 CTCTGA-CTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAG
105 CTCCGATC-GGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC
* * * * * ** * ** * *
11563426 GGAGTTCATTCCATGTCTAAG-TCTCAG-TCGGATCGAGGGTTGTGGCAGTGGGACCGACAACAC
1 GGAGTTCATTCCATGTCTAAGAT-T-AGACCAGACCGAGGGTTGCGACAGCAGGATCGGTAGCAT
* * * * * * * *
11563489 GCAGAGAGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCTCGT
64 GCAG-GA-GGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTCAGCGCCCGC
11563554 ACGCTCGTTTCATGGGTTGGCTTAGGCATAC
127 ACGCTCGTTTCATGGGTTGGCTTAGGCATAC
11563585 GGAGTTCATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
11563606 CATACTGAGT
Statistics
Matches: 777, Mismatches: 169, Indels: 97
0.74 0.16 0.09
Matches are distributed among these distances:
156 12 0.02
157 214 0.28
158 60 0.08
159 334 0.43
160 11 0.01
161 5 0.01
162 1 0.00
163 1 0.00
166 5 0.01
168 3 0.00
169 5 0.01
170 6 0.01
171 6 0.01
172 1 0.00
174 6 0.01
177 1 0.00
178 1 0.00
179 3 0.00
180 2 0.00
181 1 0.00
182 1 0.00
183 95 0.12
184 3 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GGAGTTCATTCCATGTCTAAGATTAGACCAGACCGAGGGTTGCGACAGCAGGATCGGTAGCATGC
AGGAGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTCAGCGCCCGCACGC
TCGTTTCATGGGTTGGCTTAGGCATAC
Found at i:11563027 original size:316 final size:316
Alignment explanation
Indices: 11562453--11563264 Score: 1002
Period size: 316 Copynumber: 2.6 Consensus size: 316
11562443 CTAAACAAAT
* ** *
11562453 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATTGGCGGCACGC
1 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATTGGTAGCATGC
* * * * * * *
11562518 AGGAGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCCCGCACA
66 AGGA-GGAACAGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACG
* * *
11562583 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCCAAGCCCTAGCCAGACCGAC
130 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAC
** * * *
11562648 GGTTGTGGCAGTGGGACCGTCGGCACGCAGAGAGGGATCGGGCCGATCCCCGGCTTGCGCATTAT
195 GGTTGTGGCAGCAGGACCGTCAGCACGCAGAGAGGGATCGGGCCGATCCCCGACTTGCGCATTAA
* * * **
11562713 GCCTCTCCGATCGGGTCAGCACCCGA-ACGCTTGTTTCATGGGTTCACTTAGGCATAC
260 ACCTCTCCGATCGGCTCAACACCC-ATACGCTCATTTCATGGGTTCACTTAGGCATAC
* * * * * *
11562770 GGAGTTCATTTCCAGTCTAAGATTAGACCAGACCGACGGTTGCGATAGCAGGATCGATAGCATGC
1 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATTGGTAGCATGC
* * * * *
11562835 AGGAGGACCAGGCCGGTCCCCGACTTGCACATTCTGCCTCTCCGATCGGTTCAGCGCCCGCACGC
66 AGGAGGAACAGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACGC
* * * *
11562900 TTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTATGCCCTAGCCGGACCGAGG
131 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGACG
* ** * * **
11562965 GTTGTGGCAGCAGGATCGGT-AGCACGTGGAGGGGGATCGGGTCGATCCTTGACTTGCGCATTAA
196 GTTGTGGCAGCAGGA-CCGTCAGCACGCAGAGAGGGATCGGGCCGATCCCCGACTTGCGCATTAA
** ** * *
11563029 ACCTCTCCGATCGGCTCAACGTCCATACGCTCATTTTGTGGGTTGACTTAGGCATAT
260 ACCTCTCCGATCGGCTCAACACCCATACGCTCATTTCATGGGTTCACTTAGGCATAC
* *
11563086 GGAATTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGC-AGCAGCAGGATTGGTAGCATG
1 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA-CAGCAGGATTGGTAGCATG
* * * * * *
11563150 GAGG-GGAACTGAGTCGATCCCTGGCTTGCACATTCTGCCTCTCCGGTCGGTTGAGCACCCGTAC
65 CAGGAGGAACAG-GCCGATCCCTGGCTTGCACATTCTGCCTCTCCGATCGGTTGAGCGCCCGCAC
*
11563214 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
129 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
11563265 ATACAAAGTT
Statistics
Matches: 418, Mismatches: 73, Indels: 9
0.84 0.15 0.02
Matches are distributed among these distances:
315 7 0.02
316 349 0.83
317 62 0.15
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (316 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATTGGTAGCATGC
AGGAGGAACAGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACGC
TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGACG
GTTGTGGCAGCAGGACCGTCAGCACGCAGAGAGGGATCGGGCCGATCCCCGACTTGCGCATTAAA
CCTCTCCGATCGGCTCAACACCCATACGCTCATTTCATGGGTTCACTTAGGCATAC
Found at i:11564641 original size:159 final size:159
Alignment explanation
Indices: 11564398--11564986 Score: 582
Period size: 159 Copynumber: 3.7 Consensus size: 159
11564388 CAGCACGCAT
* * ** * * * *
11564398 GGGGGATCGGGCCGATCCTTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG-CTCGCACAC
1 GGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCT-GCACGC
* * * * * * *
11564462 CCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCCAAGCCCCAGTCGGACCGACG
65 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGG
* *
11564527 GTTATGGTAGCGGGACCGATAGCACGTAAA
130 GTTATGGTAGCAGGATCGATAGCACGTAAA
* * * *
11564557 GAGGGACCGGG-CTGATCCCCGGTTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCTGAACGC
1 GGGGGACCGGGTC-GATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCTGCACGC
**
11564621 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCA-GTCTAAG-ATCAGATCGGACCGA
65 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TTCCATGTCTAAGCCCCAG-TCGGACCGA
* * * * * *
11564684 GGGTTGA-GGCAGCAGGATCAACAGCATG-CAG
128 GGGTT-ATGGTAGCAGGATCGATAGCACGTAAA
* * * * * * *
11564715 GGGGGACCGAGTCGGTCCCCGGCTTGCACATTCTGCCTCTCTGACCGGTTGAGCGCCTGCACGCT
1 GGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCTGCACGCT
* * * *
11564780 TGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGGGGG
66 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGG
* * *
11564845 TTGTGGTAGCAGGATCGGTAGCACGTAGA
131 TTATGGTAGCAGGATCGATAGCACGTAAA
* * * ** *
11564874 GGGGGATCGGGTCGATCCCTGACTTGCGCATTAAACCTCTTCGACCGGCTCAGCGTCC-GCACGC
1 GGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCG-CCTGCACGC
* * * *
11564938 TTGTTTCGTGGGTTGACTTATGCATATGGAATTCATTCCCA-GTCTAAGC
65 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGC
11564987 ATACAGAGTT
Statistics
Matches: 348, Mismatches: 70, Indels: 24
0.79 0.16 0.05
Matches are distributed among these distances:
157 5 0.01
158 124 0.36
159 206 0.59
160 13 0.04
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
GGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCTGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGG
TTATGGTAGCAGGATCGATAGCACGTAAA
Found at i:11564904 original size:317 final size:317
Alignment explanation
Indices: 11564329--11564985 Score: 791
Period size: 317 Copynumber: 2.1 Consensus size: 317
11564319 GTCTAAGCAA
* * ***
11564329 ACGGAGTTCA-TTCCTAGTCTAAGATCAGACCAGACAGAGGGTTGCGGCAATAGGATTGGCAGCA
1 ACGGAGTTCATTTCC-AGTCTAAGATCAGACCAGACAGAGGGTTGAGGCAACAGGATCAACAGCA
* * * ** * *
11564393 CGCATGGGGGATCGGGCCGATCCTTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCTCGC
65 CGCAGGGGGGACCGAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCTCGC
** *
11564458 ACACCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCCAAGCCCCAGTCGGACC
130 ACACCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGCCCCAGTCGGACC
* **
11564523 GACGGTTATGGTAGCGGGACCGATAGCACGTAAAGAGGGACCGGGCTGATCCCCGGTTTGCGCAT
195 GACGGTTATGGTAGCAGGACCGATAGCACGTAAAGAGGGACCGGGCTGATCCCCGACTTGCGCAT
** *
11564588 TATGCCTCTCCGATCGGCTCAGCG-CCTGAACGCTCGTTTCGTGGGTTGACTTAGGCAT
260 TAAACCTCTCCGACCGGCTCAGCGTCC-GAACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * *
11564646 ACGGAGTTCATTTCCAGTCTAAGATCAGATCGGACCGAGGGTTGAGGCAGCAGGATCAACAGCAT
1 ACGGAGTTCATTTCCAGTCTAAGATCAGACCAGACAGAGGGTTGAGGCAACAGGATCAACAGCAC
* * * *
11564711 GCAGGGGGGACCGAGTCGGTCCCCGGCTTGCACATTCTGCCTCTCTGACCGGTTGAGCGC-CTGC
66 GCAGGGGGGACCGAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCTC-GC
* *** *
11564775 ACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACC
130 ACACCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGCCCCAGTCGGACC
** * * * * * * *
11564840 GGGGGTTGTGGTAGCAGGATCGGTAGCACGTAGAGGGGGATCGGG-TCGATCCCTGACTTGCGCA
195 GACGGTTATGGTAGCAGGACCGATAGCACGTAAAGAGGGACCGGGCT-GATCCCCGACTTGCGCA
* * * *
11564904 TTAAACCTCTTCGACCGGCTCAGCGTCCGCACGCTTGTTTCGTGGGTTGACTTATGCAT
259 TTAAACCTCTCCGACCGGCTCAGCGTCCGAACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * *
11564963 ATGGAATTCATTCCCAGTCTAAG
1 ACGGAGTTCATTTCCAGTCTAAG
11564986 CATACAGAGT
Statistics
Matches: 285, Mismatches: 51, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
316 2 0.01
317 277 0.97
318 6 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (317 bp):
ACGGAGTTCATTTCCAGTCTAAGATCAGACCAGACAGAGGGTTGAGGCAACAGGATCAACAGCAC
GCAGGGGGGACCGAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCTCGCA
CACCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGCCCCAGTCGGACCG
ACGGTTATGGTAGCAGGACCGATAGCACGTAAAGAGGGACCGGGCTGATCCCCGACTTGCGCATT
AAACCTCTCCGACCGGCTCAGCGTCCGAACGCTCGTTTCGTGGGTTGACTTAGGCAT
Found at i:11565353 original size:26 final size:26
Alignment explanation
Indices: 11565301--11565353 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11565291 GTTGGCTTAG
*
11565301 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACGGAGTTCATTCCATGTCTAA
11565327 GCATACGGAGTTCATTCC-TAGTCTAA
1 GCATACGGAGTTCATTCCAT-GTCTAA
11565353 G
1 G
11565354 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:11566302 original size:158 final size:158
Alignment explanation
Indices: 11566133--11566502 Score: 379
Period size: 158 Copynumber: 2.3 Consensus size: 158
11566123 TTAAGCGCCC
* * * *
11566133 GCACACCCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTTATTCCATGTCTAAGCCCCAG-CCAA
1 GCACACTCGTTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAG-ACCAGACCAA
* ** ** * *
11566197 ACCGAGGGTTGTGGTAGTGGGACCAGTAGCACACAGAGGGGGATCGAGTCGATCCCCGGCTTGTG
65 ACCGAGGGTTGCGGTAGCAGGACCAACAGCACACAG-GAGGGATCGAGTCGATCCCCGGCTTGTA
* * * *
11566262 CA-TATGCCTCTTCGGTTGGCTCACCGCCA
129 CATTATACCTCTCCGGCTGGCTCACCACCA
* * * * * **
11566291 GCATACTCGTTTCGTGGGTTGACTTAGGCATACAGAATTCATTCCCA-GTCTAAGATCAGACCGG
1 GCACACTCGTTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATT-CCATGTCTAAGACCAGACCAA
* * * *
11566355 ACCGAGGGTTGCGGTAGCAGGATCAACAGCACGCAGGAGGGATCGAGTCGGTCCTCGGCTTGTAC
65 ACCGAGGGTTGCGGTAGCAGGACCAACAGCACACAGGAGGGATCGAGTCGATCCCCGGCTTGTAC
* * * *
11566420 ATTCTACCTCTCCGGCTGGCTGAGCACCT
130 ATTATACCTCTCCGGCTGGCTCACCACCA
* * *
11566449 GTACACTCGTTTCGTGGGTAGGCTTAGGCATACG-GAGTTCATTTCATGTCTAAG
1 GCACACTCGTTTCGTGGGTTGGCTTAGGCATA-GAGAGTTCATTCCATGTCTAAG
11566503 TGTACGGAGT
Statistics
Matches: 170, Mismatches: 37, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
157 31 0.18
158 136 0.80
159 3 0.02
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (158 bp):
GCACACTCGTTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGACCAGACCAAA
CCGAGGGTTGCGGTAGCAGGACCAACAGCACACAGGAGGGATCGAGTCGATCCCCGGCTTGTACA
TTATACCTCTCCGGCTGGCTCACCACCA
Found at i:11566526 original size:26 final size:26
Alignment explanation
Indices: 11566479--11566528 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
11566469 GGCTTAGGCA
* *
11566479 TACGGAGTTCATTTCATGTCTAAGTG
1 TACGGAGTTCATTCCATATCTAAGTG
11566505 TACGGAGTTCATTCCCA-ATCTAAG
1 TACGGAGTTCATT-CCATATCTAAG
11566529 ATCAGACCGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 19 0.90
27 2 0.10
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (26 bp):
TACGGAGTTCATTCCATATCTAAGTG
Found at i:11566885 original size:26 final size:26
Alignment explanation
Indices: 11566855--11566907 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11566845 GTTGACTTAG
11566855 GCATAC-GAAGTTCATCCCCAGCCTAA
1 GCATACTG-AGTTCATCCCCAGCCTAA
* *
11566881 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACTGAGTTCATCCCCAGCCTAA
11566907 G
1 G
11566908 ATCTGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACTGAGTTCATCCCCAGCCTAA
Found at i:11567683 original size:159 final size:158
Alignment explanation
Indices: 11567516--11567821 Score: 348
Period size: 158 Copynumber: 1.9 Consensus size: 158
11567506 CCCAGTTGGG
* ** * *
11567516 CCGAGGGTTGTGGCAACGGGACCAACAGCACACAGAGGGGGATCGGGGT-GATCCTCGACTTGCG
1 CCGAGGGTTGTGGCAACAGGACCAACAGCACACAG-GGGGGAT-AAGGTAGATCCCCGACTCGCG
* * *
11567580 CATTATGCCTCTTCGGTCGGTTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTT-AGGCATACG
64 CATTATACCTCTCCGGTCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTCA-GCATACG
11567644 GAGTTCATTCC-TAGTCTAAGATCGGACCGGA
128 GAGTTCATTCCAT-GTCTAAGATCGGACCGGA
** * * * * * *
11567675 CCGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGGGATAAGGTAGGTCCCCGGCTCGTGCA
1 CCGAGGGTTGTGGCAACAGGACCAACAGCACACAGGGGGGATAAGGTAGATCCCCGACTCGCGCA
* * * * * * *
11567740 TTTTACCTCTCCGGTCGGCTGAGTGCCCGTACGCTCGTTTTGTGGGTTGGCTTCAGCATACGGAG
66 TTATACCTCTCCGGTCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTCAGCATACGGAG
11567805 TTCATTCCATGTCTAAG
131 TTCATTCCATGTCTAAG
11567822 CATATGGAGT
Statistics
Matches: 121, Mismatches: 23, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
157 3 0.02
158 87 0.72
159 31 0.26
ACGTcount: A:0.18, C:0.25, G:0.32, T:0.24
Consensus pattern (158 bp):
CCGAGGGTTGTGGCAACAGGACCAACAGCACACAGGGGGGATAAGGTAGATCCCCGACTCGCGCA
TTATACCTCTCCGGTCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTCAGCATACGGAG
TTCATTCCATGTCTAAGATCGGACCGGA
Found at i:11567823 original size:26 final size:26
Alignment explanation
Indices: 11567794--11567847 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
11567784 GGTTGGCTTC
11567794 AGCATACGGAGTTCATT-CCATGTCTA
1 AGCATACGGAGTTCATTCCCA-GTCTA
*
11567820 AGCATATGGAGTTCATTCCCAGTCTA
1 AGCATACGGAGTTCATTCCCAGTCTA
11567846 AG
1 AG
11567848 ATTGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
AGCATACGGAGTTCATTCCCAGTCTA
Found at i:11568726 original size:26 final size:26
Alignment explanation
Indices: 11568674--11568726 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
11568664 GTTGGCTTAG
* *
11568674 GCATACAGAGTTTATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTATAA
*
11568700 GCATACGGAGTTCATTCCCA-GTATAA
1 GCATACAGAGTTCATT-CCATGTATAA
11568726 G
1 G
11568727 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTATAA
Found at i:11568747 original size:879 final size:877
Alignment explanation
Indices: 11567210--11568896 Score: 2184
Period size: 879 Copynumber: 1.9 Consensus size: 877
11567200 GGATCGAGCC
* * * * *
11567210 GATCCTCGACTTGGCATTCTGCCTCTTCGATCGGCCTTTTCAGCCGGTTGAGCACCCGCACGCTC
1 GATCCCCGACTTGGCATTATGCCTCTCCAATCGGCCTCTTCAGCCGGTTGAGCACCCGCACGCTC
* *
11567275 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAACCATATAGAGTTCATTCCCA
66 GTTTCATGGGTTGACATAGGCATACGGAGTTCATCCCCAGTCTAACCATACAGAGTTCATTCCCA
* * ** * * * *
11567340 GTCTAAGATCCAACCGAATCGAGCGTTGCGATAGCAGGATCAACAGCACGTAGTGGGGACCGGGC
131 GTCTAAGATCCAACCGAACCAAGCGTTAAGACAGCAGGATCAACAGCACGCAGGGGGGACCGAGC
* * * ** *
11567405 TGATCCCCAGCTTACGCATTCTGCCTCTCTGACCGGTTGAGGGCCCGTACGTCCGTTTCATGGGT
196 CGATCCCCAGCTTACGCATTCTGCCTCTCTGACCGGCTGAGCGCCCACACGCCCGTTTCATGGGT
* * *
11567470 TGGCTTAGGCATAGGGAGTTCATTCCATGTGTAAGCCCCAGTTGGGCCGAGGGTTGTGGCAACGG
261 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATTGGACCGAGGGTTGTGGCAACGG
* * **
11567535 GACCAACAGCACACAGAGGGGGATCGGGGTGATCCTCGACTTGCGCATTATGCCTCTTCGGTCGG
326 GACCAACAGCACACAGAGGGGGATCGGGCTGATCCTCGACTTGCGCATTATGCCTCTCCGACCGG
* * *
11567600 TTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
391 TTCAGCGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGA
*** * * *
11567665 TCGGACCGGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGGGATAAGGTAGGTCCCC
456 TCGGACCGGACCGAGGGTTGCAACAGCAGGATCGACAGCACGCAGGGGGGACAAGCTAGGTCCCC
* * * * * **
11567730 GGCTCGTGCATTTTACCTCTCCGGTCGGCTGAGTGCCCGTACGCTCGTTTTGTGGGTTGGCTTCA
521 GGCTCGTGCATTCTACCTCTCCGATCGGCTAAGTGCCCGCACGCTCATTTCATGGGTTGGCTTCA
* * * ** ***
11567795 GCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGATTGGAC
586 GCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATCAGACCAGAC
* * * *
11567860 CAAGGGTTGCTGCAGCAGGACCAGCAGCAAGATCGACAGCATGCAGAGGGGATCGGG-TCGATCC
651 CAAGGGTTGCAGCAGCAAGACCAGCAGCAAGATCGACAACACGCAGAGGGGATCGGGCT-GATCC
* * * * * *
11567924 CCGGCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCACCCGCACGCTTGTTTCGTTGGTTGGCTT
715 CCAGCTTACACATTCTGCCTCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTT
*
11567989 AGGCATACGGAGTTGATT-CCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTAGGACCG
780 AGGCATACGGAGTTCATTCCCA-GTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTAGGACCG
11568053 GTAGCGGGATCTGCACACAGAAAGGGATCGGGTT
844 GTAGCGGGATCTGCACACAGAAAGGGATCGGGTT
*
11568087 GATCCCCGACTTGTGCATTATGCCTCTCCAATCGGCCTCTTC-GACCGGTTGAGCACCCGTACGC
1 GATCCCCGACTTG-GCATTATGCCTCTCCAATCGGCCTCTTCAG-CCGGTTGAGCACCCGCACGC
* * **
11568151 TCGTTTCATGGGTTGACATAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTTG
64 TCGTTTCATGGGTTGACATAGGCATACGGAGTTCATCCCCAGTCTAACCATACAGAGTTCATTCC
* * * * * * *
11568216 CAGTCTAAGATCCGATCGAACCAAGGGTTAAGGCAGTAGGATCGACAGCACGCAGGGGGGGACTG
129 CAGTCTAAGATCCAACCGAACCAAGCGTTAAGACAGCAGGATCAACAGCACGCA-GGGGGGACCG
* *
11568281 AGCCGATCCCC-GACTTACGCATTCTGCCTCT-TCGATCGGCTGAGCGCCCACACGCCCGTTTCG
193 AGCCGATCCCCAG-CTTACGCATTCTGCCTCTCT-GACCGGCTGAGCGCCCACACGCCCGTTTCA
*
11568344 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATTGGATCGAGGGTTGTGGC
256 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATTGGACCGAGGGTTGTGGC
* *** ** * *
11568409 AGCGGGACTGGCAGCATGCAGAGGGGGATTGGGCTGATCCTCGACTTGCGTATTATGCCTCTCCG
321 AACGGGACCAACAGCACACAGAGGGGGATCGGGCTGATCCTCGACTTGCGCATTATGCCTCTCCG
* * * *
11568474 ACCGGTTCAGTGCTCGAATGCTCATTTCGTGGGTTGACTTAGTCATACGGAGTTCATTCCCAATC
386 ACCGGTTCAGCGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATC
* * * * * **
11568539 TAAGATC-GAGCCGGACTGAGGTTTGCAATAGCAGGATCGACAGCATGCAGGGGGTACCCGACT-
451 TAAGATCGGA-CCGGACCGAGGGTTGCAACAGCAGGATCGACAGCACGCAGGGGGGACAAG-CTA
* * * *
11568602 GGTCCTCGGCTTGTGCATTCTACCTCTCTGATCGGCTAAGTGCTCGCACGCTCATTTCATGGGTT
514 GGTCCCCGGCTCGTGCATTCTACCTCTCCGATCGGCTAAGTGCCCGCACGCTCATTTCATGGGTT
*
11568667 GGCTT-AGGCATACAGAGTTTATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATCA
579 GGCTTCA-GCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATCA
** * * * * * * * *
11568731 GACCAGACTGAGGGTTGCAGTAGCAAGACTAGTAGCAGGATCGATAACACGTAGGGGGGATTGGG
643 GACCAGACCAAGGGTTGCAGCAGCAAGACCAGCAGCAAGATCGACAACACGCAGAGGGGATCGGG
* * * *
11568796 CTGATCCTCAGCTTACACATTCTGCCTCTCTGGTCGACTGAGCATCCGTACGCTCGTTTCGTGGG
708 CTGATCCCCAGCTTACACATTCTGCCTCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGG
11568861 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
773 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
11568897 ATCAAACTGG
Statistics
Matches: 684, Mismatches: 116, Indels: 18
0.84 0.14 0.02
Matches are distributed among these distances:
877 13 0.02
878 149 0.22
879 517 0.76
880 5 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (877 bp):
GATCCCCGACTTGGCATTATGCCTCTCCAATCGGCCTCTTCAGCCGGTTGAGCACCCGCACGCTC
GTTTCATGGGTTGACATAGGCATACGGAGTTCATCCCCAGTCTAACCATACAGAGTTCATTCCCA
GTCTAAGATCCAACCGAACCAAGCGTTAAGACAGCAGGATCAACAGCACGCAGGGGGGACCGAGC
CGATCCCCAGCTTACGCATTCTGCCTCTCTGACCGGCTGAGCGCCCACACGCCCGTTTCATGGGT
TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATTGGACCGAGGGTTGTGGCAACGG
GACCAACAGCACACAGAGGGGGATCGGGCTGATCCTCGACTTGCGCATTATGCCTCTCCGACCGG
TTCAGCGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGA
TCGGACCGGACCGAGGGTTGCAACAGCAGGATCGACAGCACGCAGGGGGGACAAGCTAGGTCCCC
GGCTCGTGCATTCTACCTCTCCGATCGGCTAAGTGCCCGCACGCTCATTTCATGGGTTGGCTTCA
GCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATCAGACCAGAC
CAAGGGTTGCAGCAGCAAGACCAGCAGCAAGATCGACAACACGCAGAGGGGATCGGGCTGATCCC
CAGCTTACACATTCTGCCTCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTA
GGCATACGGAGTTCATTCCCAGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTAGGACCGGT
AGCGGGATCTGCACACAGAAAGGGATCGGGTT
Found at i:11569186 original size:159 final size:158
Alignment explanation
Indices: 11568807--11569215 Score: 427
Period size: 158 Copynumber: 2.6 Consensus size: 158
11568797 TGATCCTCAG
* * * *
11568807 CTTACACATTCTGCCTCTCTGGTCGACTGAGCATCCGTACGCTCGTTTCGTGGGTTGACTTAGGC
1 CTTACACATTCTGCCTCTCTGGCCGACTGAGCCT-CGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* *
11568872 ATACGGAGTTCATTCCCA-GTCTAAG-ATCAAACTGGACTGAGGGTTGCAGTAGCAGGATCGGCA
65 ATACGGAGTTCATT-CCATGTCTAAGCACCAAACTGGACGGAGGGTTGCAGTAGCAGGATCGGCA
* * *
11568935 GCACGCAGATGGGACCGGGCCGATCCCTGG
129 GCACGCAGAGGGGACCGGGCCGATCCCCGA
* * * ** * * * * *
11568965 CTTACGCATTCTGCCTCTCCGACCGGTTGAGCACCCCCACACCCGTTTTGTGGGTTGGCTTAGGC
1 CTTACACATTCTGCCTCTCTGGCCGACTGAGC-CTCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * ** *
11569030 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACGGAGGGCTGTG-A-TAGCGGGATCGGC
65 ATACGGAGTTCATTCCATGTCTAAGCACCAAACTGGACGGAGGG-T-TGCAGTAGCAGGATCGGC
*
11569092 AGGACGCAGAGGGGGACC-GGCCTGATCCCCGA
128 AGCACGCAGA-GGGGACCGGGCC-GATCCCCGA
*
11569124 C-TAGCACATTCTGCCTCTCTGGCCGACTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGC
1 CTTA-CACATTCTGCCTCTCTGGCCGACTGAGC-CTCGCACGCTCGTTTCGTGGGTTGGCTTAGG
** *
11569188 CATACAAAGTTTATTCCATGTCTAAGCA
64 CATACGGAGTTCATTCCATGTCTAAGCA
11569216 TACAGAGTTT
Statistics
Matches: 201, Mismatches: 42, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.01
158 106 0.53
159 90 0.45
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
CTTACACATTCTGCCTCTCTGGCCGACTGAGCCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
TACGGAGTTCATTCCATGTCTAAGCACCAAACTGGACGGAGGGTTGCAGTAGCAGGATCGGCAGC
ACGCAGAGGGGACCGGGCCGATCCCCGA
Found at i:11569217 original size:26 final size:26
Alignment explanation
Indices: 11569188--11569239 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11569178 TTGGCTTAGC
11569188 CATACAAAGTTTATT-CCATGTCTAAG
1 CATACAAAGTTTATTCCCA-GTCTAAG
*
11569214 CATACAGAGTTTATTCCCAGTCTAAG
1 CATACAAAGTTTATTCCCAGTCTAAG
11569240 AGTTAGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (26 bp):
CATACAAAGTTTATTCCCAGTCTAAG
Found at i:11570571 original size:26 final size:26
Alignment explanation
Indices: 11570542--11570594 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11570532 GTTGACTTAG
*
11570542 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
11570568 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11570594 G
1 G
11570595 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11570872 original size:159 final size:159
Alignment explanation
Indices: 11570653--11571071 Score: 436
Period size: 159 Copynumber: 2.6 Consensus size: 159
11570643 GGGACTAGGT
* * *
11570653 CGATACCT-GGCTTGTGCATTCTGCCTCTCC-AGTCGGCTGAGCACCCGTACGCCCGTTTCATGG
1 CGAT-CCTCGGCTTGTGCATTCTGCCTCTCCGA-TCGGCTGAGTACCCGAACGCTCGTTTCATGG
* * * *
11570716 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGCAA
64 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGTTGCGGCAA
* * * *
11570780 CGGGACCGGCAGCACGCAGAGGGGGACCCGAC
129 CAGGACCGACAGCACACAG-GGGGGACCAGAC
* * * * *
11570812 CGATCCTCGGCTTGTGCATTATGCCTCTCCGATTGGCTCAGTTCCCGAACGCTCGGTTCATGGGT
1 CGATCCTCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGTACCCGAACGCTCGTTTCATGGGT
** * * * *
11570877 TAACTTAGGCATACGGAGTTAATTCCCA-GTCTAAG-ATCAGACCGAACCGAGGGTTGCGGTAGC
66 TGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGAACCGAGGGTTGCGGCAAC
* **
11570940 AGGATCGACAGCACACAGGGGGGACCAGGT
130 AGGACCGACAGCACACAGGGGGGACCAGAC
* * * * * * * *
11570970 CGGTCC-CTGGCTTATGCATTCTACCTCTCCGGTCGACTGAGTGCCCGCACGCTCGTTTCGTGGG
1 CGATCCTC-GGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGTACCCGAACGCTCGTTTCATGGG
* *
11571034 TTGGCTTAAGCATACGGAGTTCATTCGATGTCTAAGCA
65 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
11571072 TATGGAGTTC
Statistics
Matches: 211, Mismatches: 42, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.01
158 92 0.44
159 112 0.53
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
CGATCCTCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGTACCCGAACGCTCGTTTCATGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGTTGCGGCAACA
GGACCGACAGCACACAGGGGGGACCAGAC
Found at i:11570885 original size:343 final size:343
Alignment explanation
Indices: 11570225--11570911 Score: 892
Period size: 343 Copynumber: 2.0 Consensus size: 343
11570215 GTTGACTTAG
* * * *
11570225 GCATACGAAGTTCATTCCCAATCTAAGATTAGACCGGACCGAGGGTTGCGGTAGCAGGATTGACA
1 GCATACGAAGTTCATTCCCAATCTAAGATCAGACCGGACCGAAGGTTACGGTAGCAGGATCGACA
* * * * *
11570290 GCACGGAAGGGGGACCGGGCCGATCCCTCGCTTACGCATTCTGTCTTTCCGGTCGGCTGAGCACC
66 GCACGGAAGGGGGACCAGGCCGATACCTCGCTTACGCATTCTGCCTCTCCAGTCGGCTGAGCACC
* * * * *
11570355 CGCACGCCTGTTTCATTGGTTGGCTTAGGCCTATAGAGTTCATTCCATGTCTAAGCCCCAGCCGG
131 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAACCGG
* * * ** *
11570420 ACTGAGGGTTGTGGCAGCGAGACCGGTAGCACGCAGAGGGGGACGGGGCCTGTCCCCGGCTTGCG
196 ACCGAGGGTTGTGGCAACGAGACCGGCAGCACGCAGAGGGGGACCCGACCTGTCCCCGGCTTGCG
* * * * * * * *
11570485 CATTCTGCCTCTCCAGTCGACTGAGTGCCCGTATGCTCATTTCGTGGGTTGACTTAGGCATATGG
261 CATTATGCCTCTCCAGTCGACTCAGTGCCCGAACGCTCAGTTCATGGGTTAACTTAGGCATACGG
*
11570550 AGTTCATCCCCAGTCTAA
326 AGTTAATCCCCAGTCTAA
* * * * *
11570568 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAAGGTTACGGTAGTAGGATCGACA
1 GCATACGAAGTTCATTCCCAATCTAAGATCAGACCGGACCGAAGGTTACGGTAGCAGGATCGACA
* * * * **
11570633 GCGCGGAAGGGGGACTAGGTCGATACCTGGCTTGTGCATTCTGCCTCTCCAGTCGGCTGAGCACC
66 GCACGGAAGGGGGACCAGGCCGATACCTCGCTTACGCATTCTGCCTCTCCAGTCGGCTGAGCACC
* *
11570698 CGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGG
131 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAACCGG
* * *
11570763 ACCGAGGGTTGTGGCAACGGGACCGGCAGCACGCAGAGGGGGACCCGACC-GATCCTCGGCTTGT
196 ACCGAGGGTTGTGGCAACGAGACCGGCAGCACGCAGAGGGGGACCCGACCTG-TCCCCGGCTTGC
* * * *
11570827 GCATTATGCCTCTCC-GATTGGCTCAGTTCCCGAACGCTCGGTTCATGGGTTAACTTAGGCATAC
260 GCATTATGCCTCTCCAG-TCGACTCAGTGCCCGAACGCTCAGTTCATGGGTTAACTTAGGCATAC
*
11570891 GGAGTTAATTCCCAGTCTAA
324 GGAGTTAATCCCCAGTCTAA
11570911 G
1 G
11570912 ATCAGACCGA
Statistics
Matches: 292, Mismatches: 50, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
342 2 0.01
343 290 0.99
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (343 bp):
GCATACGAAGTTCATTCCCAATCTAAGATCAGACCGGACCGAAGGTTACGGTAGCAGGATCGACA
GCACGGAAGGGGGACCAGGCCGATACCTCGCTTACGCATTCTGCCTCTCCAGTCGGCTGAGCACC
CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAACCGG
ACCGAGGGTTGTGGCAACGAGACCGGCAGCACGCAGAGGGGGACCCGACCTGTCCCCGGCTTGCG
CATTATGCCTCTCCAGTCGACTCAGTGCCCGAACGCTCAGTTCATGGGTTAACTTAGGCATACGG
AGTTAATCCCCAGTCTAA
Found at i:11571069 original size:158 final size:157
Alignment explanation
Indices: 11570565--11571059 Score: 517
Period size: 158 Copynumber: 3.1 Consensus size: 157
11570555 ATCCCCAGTC
* * * * *
11570565 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAAGGTTACGGTAGTAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCG
* * * * * *
11570630 ACAGCGCGGAAGGGGGACTAGGTCGATACCTGGCTTGTGCATTCTGCCTCTCCAGTCGGCTGAGC
66 ACAGCACGCAGGGGGGACCAGGTCGAT-CCTGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGT
* *
11570695 ACCCGTACGCCCGTTTCATGGGTTGGCT
130 ACCCGAACGCTCGTTTCATGGGTTGGCT
* * ** * * * * *
11570723 TAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGCAACGGGAC
1 TAAGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGTAGCAGGAT
* * ** * * * *
11570786 CGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGTGCATTATGCCTCTCCGATTGGCTC
64 CGACAGCACGCAG-GGGGGACCAGGTCGATCCT-GGCTTGTGCATTCTGCCTCTCCGGTCGGCTG
* * **
11570851 AGTTCCCGAACGCTCGGTTCATGGGTTAACT
127 AGTACCCGAACGCTCGTTTCATGGGTTGGCT
* * *
11570882 TAGGCATACGGAGTTAATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCG
* * * * *
11570947 ACAGCACACAGGGGGGACCAGGTCGGTCCCTGGCTTATGCATTCTACCTCTCCGGTCGACTGAGT
66 ACAGCACGCAGGGGGGACCAGGTCGAT-CCTGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGT
* * *
11571012 GCCCGCACGCTCGTTTCGTGGGTTGGCT
130 ACCCGAACGCTCGTTTCATGGGTTGGCT
11571040 TAAGCATACGGAGTTCATTC
1 TAAGCATACGGAGTTCATTC
11571060 GATGTCTAAG
Statistics
Matches: 265, Mismatches: 65, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
157 3 0.01
158 136 0.51
159 123 0.46
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCG
ACAGCACGCAGGGGGGACCAGGTCGATCCTGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGTA
CCCGAACGCTCGTTTCATGGGTTGGCT
Found at i:11571264 original size:27 final size:27
Alignment explanation
Indices: 11571234--11571294 Score: 63
Period size: 26 Copynumber: 2.3 Consensus size: 27
11571224 TTCGTGGGTT
* * *
11571234 GTCTTAGGCATACAGAGTTTATCCCCA
1 GTCTTAAGAATACAGAGTTCATCCCCA
* *
11571261 GTC-TAAGAATACGGAGTTCATTCCCA
1 GTCTTAAGAATACAGAGTTCATCCCCA
11571287 GTC-TAAGA
1 GTCTTAAGA
11571295 TCGAACAGGA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (27 bp):
GTCTTAAGAATACAGAGTTCATCCCCA
Found at i:11571272 original size:26 final size:26
Alignment explanation
Indices: 11571243--11571294 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11571233 TGTCTTAGGC
*
11571243 ATACAGAGTTTATCCCCAGTCTAAGA
1 ATACAGAGTTCATCCCCAGTCTAAGA
* *
11571269 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTTCATCCCCAGTCTAAGA
11571295 TCGAACAGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGA
Found at i:11572323 original size:26 final size:26
Alignment explanation
Indices: 11572294--11572346 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11572284 GTTGACTTAC
11572294 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
11572320 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11572346 G
1 G
11572347 TTCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11573199 original size:26 final size:26
Alignment explanation
Indices: 11573149--11573201 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11573139 GTTGACTTAG
* *
11573149 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
11573175 GCATACGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCTAATCTAA
11573201 G
1 G
11573202 ATCGAATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:11573340 original size:31 final size:31
Alignment explanation
Indices: 11573302--11573365 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
11573292 CCGGCTGAAC
11573302 GCCCGCACACCCGTTTCGTGGGTTCGCTTAG
1 GCCCGCACACCCGTTTCGTGGGTTCGCTTAG
* * *
11573333 GCCCGCACGCCCGTTTTGTGGGTTGGCTTAG
1 GCCCGCACACCCGTTTCGTGGGTTCGCTTAG
11573364 GC
1 GC
11573366 ATAGGGAGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.08, C:0.33, G:0.33, T:0.27
Consensus pattern (31 bp):
GCCCGCACACCCGTTTCGTGGGTTCGCTTAG
Found at i:11573733 original size:26 final size:26
Alignment explanation
Indices: 11573684--11573734 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
11573674 TGGCTTAGGC
*
11573684 ATACAGAGTTCATTCCATGTCTAAGT
1 ATACAGAGTTCATTCCATGCCTAAGT
*
11573710 ATACATAGTTCATTCCCA-GCCTAAG
1 ATACAGAGTTCATT-CCATGCCTAAG
11573735 ATCGGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCATGCCTAAGT
Found at i:11573915 original size:26 final size:26
Alignment explanation
Indices: 11573879--11573931 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11573869 GTTGACTTAG
* *
11573879 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
11573905 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
11573931 G
1 G
11573932 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:11574091 original size:26 final size:26
Alignment explanation
Indices: 11574062--11574114 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
11574052 AGTAACTTAT
* *
11574062 GCATACGGAGTTTA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
*
11574088 GCATGCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11574114 G
1 G
11574115 GTCGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11574145 original size:183 final size:184
Alignment explanation
Indices: 11573524--11574201 Score: 480
Period size: 183 Copynumber: 3.6 Consensus size: 184
11573514 TTGACTTAGT
* * * * * *
11573524 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGATAGCAGGATCGACAG
1 CATACAGAGTTCATCCCCAATCTAAGATCAAACCGGATCGAGGGTTACGACAGCAGGATCGACAG
* * * * * ** * * * *
11573589 CACGC-AGGAGGGGATCAGGCTGGACCCCAG-CTTGCACATTCTGCCTCTCCGGTCGGCT-GAGC
66 CACGCTA-G-GGGGACCGGGC-CGATCCCGGACTTGTGCATTATGCATCTTCGGTCGGCTCTA-C
* * * ** * *
11573651 GCCTGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCC-ATGTCTAAG
127 GCCCGCACGCTCGTTTCGTGAGTTAACTTAGGCATACGGAGTTCATCCCTA-GTCTAAG
* * * ** ** * * * * *
11573709 TATACATAGTTCATTCCCAGCCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGAATCG-TAG
1 CATACAGAGTTCATCCCCAATCTAAGATCAAACCGGATCGAGGGTTACGACAGCAGGATCGACAG
** * * * * *
11573773 CACGC-AGGGGGGCACCGGGCCGATCCCTAACTTGAGCATTCTACCTCTCTGGTCAGCCTCTTCG
66 CACGCTA-GGGGG-ACCGGGCCGATCCCGGACTTGTGCATTAT-GC-ATCT--TC-G----GTCG
* *
11573837 GCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTC
120 GCT--CT-A-CGCCCGCACGCTCGTTTCGTGAGTTAACTTAGGCATACGGAGTTCATCCCTAGTC
11573902 TAAG
181 TAAG
* **
11573906 CATACGGAGTTCATCCCCAATCTAAGATCAAACCGGATCGAGGGTTACGACAGCAGGATCGGTAG
1 CATACAGAGTTCATCCCCAATCTAAGATCAAACCGGATCGAGGGTTACGACAGCAGGATCGACAG
* *
11573971 CATGC-AGGGGGACCGGGCCGATCCTCGG-CTTGTGCATTATGCCTCTTCGGTCGGCTCTACGCC
66 CACGCTAGGGGGACCGGGCCGATCC-CGGACTTGTGCATTATGCATCTTCGGTCGGCTCTACGCC
* *
11574034 CGCACGCTCGTTTTACG-GAG-TAACTTATGCATACGGAGTTTAT-CCTCAGTCTAAG
130 CGCACGCTCG-TTT-CGTGAGTTAACTTAGGCATACGGAGTTCATCCCT-AGTCTAAG
* * * * ** * *
11574089 CATGCAGAGTTCATTCCCAGTCTAAGGTCGGACCGGA-CTGAGGGTTGCGGCAGCAGGATCGACA
1 CATACAGAGTTCATCCCCAATCTAAGATCAAACCGGATC-GAGGGTTACGACAGCAGGATCGACA
* * *
11574153 GCACGCTGGGGGGATCGGGCCGATCCCGGACTTGTGCATTCTGCATCTT
65 GCACGCTAGGGGGACCGGGCCGATCCCGGACTTGTGCATTATGCATCTT
11574202 TGGCCAGTTG
Statistics
Matches: 403, Mismatches: 66, Indels: 49
0.78 0.13 0.09
Matches are distributed among these distances:
182 4 0.01
183 110 0.27
184 65 0.16
185 57 0.14
186 4 0.01
187 6 0.01
188 1 0.00
189 1 0.00
191 1 0.00
192 2 0.00
193 6 0.01
194 4 0.01
195 1 0.00
196 23 0.06
197 109 0.27
198 9 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (184 bp):
CATACAGAGTTCATCCCCAATCTAAGATCAAACCGGATCGAGGGTTACGACAGCAGGATCGACAG
CACGCTAGGGGGACCGGGCCGATCCCGGACTTGTGCATTATGCATCTTCGGTCGGCTCTACGCCC
GCACGCTCGTTTCGTGAGTTAACTTAGGCATACGGAGTTCATCCCTAGTCTAAG
Found at i:11574589 original size:26 final size:26
Alignment explanation
Indices: 11574559--11574611 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11574549 GTTGGCTCAG
*
11574559 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
11574585 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11574611 G
1 G
11574612 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11575464 original size:159 final size:158
Alignment explanation
Indices: 11575128--11575464 Score: 367
Period size: 159 Copynumber: 2.1 Consensus size: 158
11575118 ACTGGACCAT
* * * * * * *
11575128 GGGTTGCGGTAGCAGGATCGGCAGCACGCAGGGGAGACCGAGCCGATCCCCGGCTTGCGCATTCT
1 GGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGAGACCGAGCCAATCCCCAGCTTGCGCATTAT
* * * * * *
11575193 GCCTCTCCGGCCAACTGAGTGCCCGCACGCATGTTTCGTGGGTTGGCTTGGGCATAGTGAGTTCA
66 GCCTCTCCGGCCAACTCAGTGCCCGCACACATATTTCATGGGTTGACTTAGGCATAGTGAGTTCA
* **
11575258 TTCCATGTCTAATTCCCAGCCAGATTGA
131 TTCCATGTCTAATGCCCAGCCAGACCGA
* * * * *
11575286 GGGTTGTGGCAGCAAGACCGACAGCACGTAGAGGGGGATCGGGCCAATCCCCAGCTTGCGCATTA
1 GGGTTGTGGCAGCAGGACCGACAGCACGCAG-GGGAGACCGAGCCAATCCCCAGCTTGCGCATTA
* * **
11575351 TGCCTCTCTGTCCGGCTCAGTGCCCGCACAC-TCATTTCATGGGTTGACTTAGGCATACG-GAGT
65 TGCCTCTCCGGCCAACTCAGTGCCCGCACACAT-ATTTCATGGGTTGACTTAGGCATA-GTGAGT
*
11575414 TCATTCCATGTCTAA-GCCACAG-CTGAACCGA
128 TCATTCCATGTCTAATGCC-CAGCCAG-ACCGA
11575445 GGGTTGTGGCAGCAGGACCG
1 GGGTTGTGGCAGCAGGACCG
11575465 GCAGTAGGAT
Statistics
Matches: 147, Mismatches: 27, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
158 30 0.20
159 116 0.79
160 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGAGACCGAGCCAATCCCCAGCTTGCGCATTAT
GCCTCTCCGGCCAACTCAGTGCCCGCACACATATTTCATGGGTTGACTTAGGCATAGTGAGTTCA
TTCCATGTCTAATGCCCAGCCAGACCGA
Found at i:11575604 original size:26 final size:26
Alignment explanation
Indices: 11575574--11575626 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11575564 GTTGACTTTG
*
11575574 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
11575600 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11575626 G
1 G
11575627 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11576154 original size:26 final size:26
Alignment explanation
Indices: 11576124--11576176 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11576114 GTTGACTTTG
11576124 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
11576150 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11576176 G
1 G
11576177 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11576443 original size:11 final size:11
Alignment explanation
Indices: 11576427--11576470 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
11576417 ACCCAGGCAC
11576427 CATCGTCGGAG
1 CATCGTCGGAG
*
11576438 CATCGTCAGAG
1 CATCGTCGGAG
11576449 CATCG-CAGGAG
1 CATCGTC-GGAG
*
11576460 CATCGCCGGAG
1 CATCGTCGGAG
11576471 AGCCGAACTG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 1 0.03
11 27 0.93
12 1 0.03
ACGTcount: A:0.23, C:0.30, G:0.34, T:0.14
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:11577947 original size:26 final size:26
Alignment explanation
Indices: 11577918--11577969 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
11577908 TTGACTTAGA
11577918 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
11577944 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
11577970 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:11585304 original size:159 final size:155
Alignment explanation
Indices: 11585074--11585499 Score: 442
Period size: 159 Copynumber: 2.7 Consensus size: 155
11585064 ACGCAGGGGG
* * * * * *
11585074 GATCAGACCAATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGTCGAGCACCCGCACACCCGTT
1 GATCAGGCCGATCCCTGGCTTGCGCATTATGCCTCT-CGGCCGGTC-AGCACCCGCACGCTCGTT
* *
11585139 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCGTAGCCGGACCGACGCTTGT
64 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCGGA-CCGGACCGACGCTTGC
* *
11585204 GGCAGCAAGACCGACAGCACATAAAGAGA
128 GACAGCAAGACCGACAGCAC-GAAAGAGA
* * * * *
11585233 GATCGGGCCGATCCCTGACTTGCACATTATGCCTCTACGGCCGGCTCAGCGCCCGCACGCTTGTT
1 GATCAGGCCGATCCCTGGCTTGCGCATTATGCCTCT-CGGCCGG-TCAGCACCCGCACGCTCGTT
* * * * * * *
11585298 TCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATCGGACCGGATCGAGGGTTG
64 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG-CCGGACCGGACCGACGCTTG
* * * *
11585362 CGACAGCAAGATCGACAGCACGCAAGGGG
127 CGACAGCAAGACCGACAGCACGAAAGAGA
* * * * * *
11585391 GATCAGGCCGATCCCTGGCTTACGCATTTTACCTCTCGGGTCGGGTGAGTACCCGCACGCTCGTT
1 GATCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTC-GG-CCGGTCAGCACCCGCACGCTCGTT
*
11585456 TCATGGGTTGGCTTAGGCAT-GCGGAGTTCATTCCATGTCTAAGC
64 TCGTGGGTTGGCTTAGGCATAG-GGAGTTCATTCCATGTCTAAGC
11585500 ATACGAAGTT
Statistics
Matches: 217, Mismatches: 43, Indels: 16
0.79 0.16 0.06
Matches are distributed among these distances:
157 4 0.02
158 86 0.40
159 119 0.55
160 8 0.04
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (155 bp):
GATCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCGGCCGGTCAGCACCCGCACGCTCGTTTC
GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCGGACCGGACCGACGCTTGCGAC
AGCAAGACCGACAGCACGAAAGAGA
Found at i:11585484 original size:158 final size:157
Alignment explanation
Indices: 11585004--11585498 Score: 512
Period size: 158 Copynumber: 3.1 Consensus size: 157
11584994 TATGCATACA
* * * * *
11585004 GAGTTCATTCCCA-GTCGAAGATCAGACCAGACCGAGGGTTGTGACAACAGGATCGACAGCACGC
1 GAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCAAGATCGACAGCACGC
* * * * * * *
11585068 AGGGGGGATCAGACCAATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGTCGAGCACCCGCACA
65 AAGGGGGATCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCGGACGGGT-GAGCACCCGCACG
*
11585133 CCCGTTTCGTGGGTTGGCTTAGGCATAG-G
129 CTCGTTTCGTGGGTTGGCTTAGGCAT-GCG
* * * * * * *
11585162 GAGTTCATTCCATGTCTAAG-CCGTAGCCGGACCGACGCTTGTGGCAGCAAGACCGACAGCACAT
1 GAGTTCATTCCATGTCTAAGATCGGA-CCGGACCGAGGGTTGTGACAGCAAGATCGACAGCAC-G
* * * * * * * * * *
11585226 AAAGAGAGATCGGGCCGATCCCTGACTTGCACATTATGCCTCTACGGCCGGCTCAGCGCCCGCAC
64 CAAGGGGGATCAGGCCGATCCCTGGCTTGCGCATTATGCCTCT-CGGACGGGTGAGCACCCGCAC
* * *
11585291 GCTTGTTTCGTGGGTTGACTTAGGCATACG
128 GCTCGTTTCGTGGGTTGGCTTAGGCATGCG
* * *
11585321 AAGTTCATTCCCA-GTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCAAGATCGACAGCACGC
1 GAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCAAGATCGACAGCACGC
* * * * *
11585385 AAGGGGGATCAGGCCGATCCCTGGCTTACGCATTTTACCTCTCGGGTCGGGTGAGTACCCGCACG
65 AAGGGGGATCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTC-GGACGGGTGAGCACCCGCACG
*
11585450 CTCGTTTCATGGGTTGGCTTAGGCATGCG
129 CTCGTTTCGTGGGTTGGCTTAGGCATGCG
11585479 GAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
11585499 CATACGAAGT
Statistics
Matches: 266, Mismatches: 62, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
157 9 0.03
158 134 0.50
159 112 0.42
160 11 0.04
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.21
Consensus pattern (157 bp):
GAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCAAGATCGACAGCACGCA
AGGGGGATCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCGGACGGGTGAGCACCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATGCG
Found at i:11585874 original size:26 final size:26
Alignment explanation
Indices: 11585837--11585889 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11585827 GTTGACTTAG
11585837 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
11585863 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
11585889 G
1 G
11585890 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:11586207 original size:158 final size:158
Alignment explanation
Indices: 11585920--11586524 Score: 544
Period size: 159 Copynumber: 3.8 Consensus size: 158
11585910 ACGGTAGCAG
* * * **
11585920 GATCGGCAGCAC-GCAGGGGGAATC-AGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGG-CT
1 GATCGACAGCACAGCAGGGGGGACCGA-GCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTC-
* * * * * *
11585982 GGTTGATCGCCCTGAACGCCCGTTTCATGGGTTGGCTTAGTCATAGGGAGTTCATTTCATGTCTA
64 GGCTGAGCGCCC-GCACGCCCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCA-GTCTA
* * *
11586047 AGCCCCAGCTGGGCCAAGGGTTGTGGCGGCGA
127 AGCCCCAGCTGGACCGAGGGTTGTGGCAGCGA
** * * *
11586079 GATCGATGGCACATC-GGGGGGACCAAGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGG
1 GATCGACAGCACAGCAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGG
* *
11586143 CTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
66 CTGAGCGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCA-GTCTAAGC
*
11586208 CCCAGCTGGATCGAGGGTTGTGGCAGCGA
130 CCCAGCTGGACCGAGGGTTGTGGCAGCGA
* * * * * * * **
11586237 GACCGGCAGCA-AGCAGTGGAGGATCGAGCTGATCCCTGGCTTACGCATTATGCCTCTTTGGTCG
1 GATCGACAGCACAGCAG-GGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCG
* * * * ** * * *
11586301 GCTCAGTGCCCACAAGCTTGTTTCATGGGTTGACTTATGCATATGAAGTTCATTCCCAGTCTAAG
65 GCTGAGCGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATT-CCAGTCTAAG
**** * * *
11586366 -ATTGGACTGAACCGAGGGTTGCGGTAGC-A
129 CCCCAG-CTGGACCGAGGGTTGTGGCAGCGA
* * * *
11586395 GGATCGACAGCAC-GCAGGAGGGACCGAGCGGATCCCTAGG-TTGTGCATTCTGCCTCTCCGATC
1 -GATCGACAGCACAGCAGGGGGGACCGAGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGGTC
* * * * *
11586458 GGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
64 GGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCAT-TCCAGTCTAA
11586523 GC
128 GC
11586525 ATACGGAGTT
Statistics
Matches: 361, Mismatches: 73, Indels: 24
0.79 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 173 0.48
159 180 0.50
160 6 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GATCGACAGCACAGCAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGG
CTGAGCGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCAGTCTAAGCC
CCAGCTGGACCGAGGGTTGTGGCAGCGA
Found at i:11586406 original size:159 final size:158
Alignment explanation
Indices: 11585957--11586524 Score: 495
Period size: 158 Copynumber: 3.6 Consensus size: 158
11585947 CCGATCCCCA
* * * * * *
11585957 GCTTGCGCATTCTGCCTCTCCGG-CTGGTTGATCGCCCTGAACGCCCGTTTCATGGGTTGGCTTA
1 GCTTGCGCATTCTGCCTCTTCGGTC-GGCTGAGCGCCC-GCACGCTCGTTTCATGGGTTGACTTA
* * * ** * * * *
11586021 GTCATAGGGAGTTCATT-TCATGTCTAAGCCCCAGCTGGGCCAAGGGTTGTGGCGGCGAGATCGA
64 GGCATACGGAGTTCATTCCCA-GTCTAAGCCCCAGCTGAACCGAGGGTTGCGGCAGCGAGACCGA
** * * * *
11586085 TGGCACATC-GGGGGGACCAAGCCGATCCCTG
128 CAGCA-AGCAGGAGGGACCGAGCGGATCCCTG
* * *
11586116 GCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGG
1 GCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
* * * * *
11586181 CATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCTGGATCGAGGGTTGTGGCAGCGAGACCGGCA
66 CATACGGAGTTCATTCCCA-GTCTAAGCCCCAGCTGAACCGAGGGTTGCGGCAGCGAGACCGACA
* *
11586245 GCAAGCAGTG-GAGGATCGAGCTGATCCCTG
130 GCAAGCAG-GAG-GGACCGAGCGGATCCCTG
* * * * * * * * *
11586275 GCTTACGCATTATGCCTCTTTGGTCGGCTCAGTGCCCACAAGCTTGTTTCATGGGTTGACTTATG
1 GCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
* * **** * *
11586340 CATATGAAGTTCATTCCCAGTCTAAG-ATTGGACTGAACCGAGGGTTGCGGTAGC-AGGATCGAC
66 CATACGGAGTTCATTCCCAGTCTAAGCCCCAG-CTGAACCGAGGGTTGCGGCAGCGA-GACCGAC
*
11586403 AGCACGCAGGAGGGACCGAGCGGATCCCTAG
129 AGCAAGCAGGAGGGACCGAGCGGATCCCT-G
* * * * *
11586434 G-TTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGG
1 GCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
*
11586498 CATACGGAGTTCATCCCCAGTCTAAGC
66 CATACGGAGTTCATTCCCAGTCTAAGC
11586525 ATACGGAGTT
Statistics
Matches: 336, Mismatches: 63, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
157 2 0.01
158 175 0.52
159 155 0.46
160 4 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.25
Consensus pattern (158 bp):
GCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
CATACGGAGTTCATTCCCAGTCTAAGCCCCAGCTGAACCGAGGGTTGCGGCAGCGAGACCGACAG
CAAGCAGGAGGGACCGAGCGGATCCCTG
Found at i:11586547 original size:26 final size:26
Alignment explanation
Indices: 11586497--11586549 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11586487 GTTGACTTAG
*
11586497 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
11586523 GCATACGGAGTTCATTCTCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
11586549 G
1 G
11586550 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:11586707 original size:185 final size:184
Alignment explanation
Indices: 11586347--11586708 Score: 440
Period size: 185 Copynumber: 2.0 Consensus size: 184
11586337 ATGCATATGA
* * * * *
11586347 AGTTCATTCCCAGTCTAAGATTGGACTGAACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAG
1 AGTTCATTCCCAATCTAAGATCGGACAGAACCGAGGGTTGCGGCAACAGGATCGACAGCACGCAG
* ** * * * *
11586412 GAGGGACCGAGCGGATCCCTAGGTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCTGCACGCT
66 GAGGGACCGAGCGGATCCCCACATTGCGCATTATGCCTCTCCGATCGACTGAGCGCCCGCACGCT
*
11586477 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
131 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
* * *
11586531 AGTTCATTCTCAATCTAAGATCGGATCAG-ACCGAGGGTTGTC-GCAACGGGATCGGCAGCACGC
1 AGTTCATTCCCAATCTAAGATCGGA-CAGAACCGAGGGTTG-CGGCAACAGGATCGACAGCACGC
* * * * * * * *
11586594 AGAGGGGGATCGGGCTGATCCCCACATTGCGCATTATGCCTCTCCGGTCGACTTAGTGCCCGCAT
64 AG-GAGGGACCGAGCGGATCCCCACATTGCGCATTATGCCTCTCCGATCGACTGAGCGCCCGCAC
* * *
11586659 GCTCATTTCGTGGGTTGACTTAGGCATACGGCGTTCATTCCTAGTCTAAG
128 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
11586709 ATTGGATCGG
Statistics
Matches: 148, Mismatches: 27, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
184 52 0.35
185 96 0.65
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (184 bp):
AGTTCATTCCCAATCTAAGATCGGACAGAACCGAGGGTTGCGGCAACAGGATCGACAGCACGCAG
GAGGGACCGAGCGGATCCCCACATTGCGCATTATGCCTCTCCGATCGACTGAGCGCCCGCACGCT
CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
Found at i:11586891 original size:26 final size:26
Alignment explanation
Indices: 11586839--11586891 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11586829 GCTGGCTTAG
*
11586839 GCATACAGAGTTCATTCCATGTTTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
11586865 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
11586891 G
1 G
11586892 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:11587235 original size:26 final size:26
Alignment explanation
Indices: 11587206--11587258 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11587196 GTTGACTTAG
* **
11587206 GCATATGGAGTTTGTCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
11587232 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11587258 G
1 G
11587259 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Done.