Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 72 of 402
Found at i:11587542 original size:159 final size:158
Alignment explanation
Indices: 11587232--11587773 Score: 488
Period size: 159 Copynumber: 3.4 Consensus size: 158
11587222 CCCAGTCTAA
* ** * * ** * *
11587232 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACCGAGGGTTGCGACAGTAGGATCGGC
1 GCATAAGGAGTTCATT-CCATGTCTAAGCCCCGACCGGA-CGAGGGTTATGGCAGCAGGATCGGC
* * * * * * * * * ** *
11587296 AGCACGTA-GGGGGGA-CCAGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGT
64 AGCACGCACGGGGGCATCGA-GCCGATCCCCGGCTTACACATTATGCCTCTCCGACTGGCTCAGT
* * *
11587359 GCCCGTACGCCCGTTTGATGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
11587390 GCATAAGGAGTTCATTCCATGTCTAAGCCCCGACCGGATCGAGGGTTATGGCAGCGGGACCGGCA
1 GCATAAGGAGTTCATTCCATGTCTAAGCCCCGACCGGA-CGAGGGTTATGGCAGCAGGATCGGCA
* * * *
11587455 GCATGCA-GAGGGGCATCGAGCCGATCCTCGGCTTGCACATTATGCCTCTTCGA-TCGGCTCAGT
65 GCACGCACG-GGGGCATCGAGCCGATCCCCGGCTTACACATTATGCCTCTCCGACT-GGCTCAGT
* *
11587518 GCCCGCACGCTCGTTTCATGGGTTGACTTAT
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
** * ***
11587549 GCATACA-GAGTTCATTCCCA-GTCTAAG-ATCGAACCAGACCGAGGGTTGCAGCAGCAGGATCG
1 GCATA-AGGAGTTCATT-CCATGTCTAAGCCCCG-ACCGGA-CGAGGGTTATGGCAGCAGGATCG
* * * * * *
11587611 ACAGCACGCACGGGGGGATCGAGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGACTGGCTGAG
62 GCAGCACGCACGGGGGCATCGAGCCGATCCCCGGCTTACACATTATGCCTCTCCGACTGGCTCAG
* *
11587676 TGCCCGCATGCTCGTTTCGTGGGTTGGCTTAG
127 TGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
11587708 GCATATGGAGTTCATTCCATGTCTAAGCCCCAATCGGACTGAGGGTTATGGCAGCAGGATCGGCA
1 GCATAAGGAGTTCATTCCATGTCTAAGCCCCGACCGGAC-GAGGGTTATGGCAGCAGGATCGGCA
11587773 G
65 G
11587774 TGGGATCGAC
Statistics
Matches: 307, Mismatches: 64, Indels: 25
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.01
158 61 0.20
159 234 0.76
160 9 0.03
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATAAGGAGTTCATTCCATGTCTAAGCCCCGACCGGACGAGGGTTATGGCAGCAGGATCGGCAG
CACGCACGGGGGCATCGAGCCGATCCCCGGCTTACACATTATGCCTCTCCGACTGGCTCAGTGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:11587929 original size:26 final size:26
Alignment explanation
Indices: 11587892--11587944 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11587882 GTTGATTTAG
*
11587892 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
11587918 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
11587944 G
1 G
11587945 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:11588248 original size:686 final size:679
Alignment explanation
Indices: 11586925--11589118 Score: 2436
Period size: 686 Copynumber: 3.2 Consensus size: 679
11586915 GCAGCCAGAC
* * * * * *
11586925 CAGCAGCAGGATCGACAGCATGCAGGGGGGACCAAG-CTGATTCTCGACTTGCGCATTCTGCATC
1 CAGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGTCTGATCCCCGGCTTGCGCATTCTGCCTC
* *
11586989 TCCGGTCGGCTGAGCGCCCGCACGCTCATTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCA
66 TCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
* * * * ** *
11587054 TGTCTAATCCCCAACCGGACCGAGGGTTGTGGCAGCAGGACTGACAACGGGATCGACAGCACGGA
131 TGTCTAAGCCCCAATCGGACTGAGGGTTGTGGCAGCAGGAC-GGCAGTGGGATCGACAGCACGCA
**
11587119 GAGGGGGACCTTGCTGATCCCCGGCTTACGCATTATGCCTCTCCGA-CTGGCT-G-AGC---GCT
195 GAGGGGGACCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGATC-GGCTCGAAGCTGAGCT
* ** *
11587178 --CGTATGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTTGTCCCCAGTCTAAGCATACGGA
259 CCCGTATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAA
* * *
11587241 GTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGTAGGATCGGCAGCACGTAGG
324 GTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAAG
* * *
11587306 GGGGACCAGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGTGCCCGTACGCCC
389 GGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACGCCC
* * * *
11587371 GTTTGATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCC-GACCGGATCGAGGG
454 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCAAGGG
* * * * * * *
11587435 TTATGGCAGCGGGACCGGCAGCATGCAGAGGGGCATCGAGCCGATCCTCGGCTTGCACATTATGC
518 TTGTGGCAGCGGGACCGGCAGCATGTAGAGGGGGACCGGGCTGATCCCCGGCTTGCACATTATGC
* *
11587500 CTCTTCGATCGGCTCAGTGCCC-GCACGCTCGTTTCATGGGTTGACTTATGCATACAGAGTTCAT
583 CTCTTCGGTCGGCTCAGTGCCCAG-ACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCAT
11587564 TCCCAGTCTAAGATCGAACCAGACCGAGGGTTG
647 TCCCAGTCTAAGATCGAACCAGACCGAGGGTTG
* *
11587597 CAGCAGCAGGATCGACAGCACGCACGGGGGGATCGAGTC-GATCCCCGGCTTACGCATTCTGCCT
1 CAGCAGCAGGATCGACAGCACGCA-GGGGGGACCGAGTCTGATCCCCGGCTTGCGCATTCTGCCT
* * * * *
11587661 CTCC-GACTGGCTGAGTGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTC
65 CTCCGGTC-GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC
*
11587725 CATGTCTAAGCCCCAATCGGACTGAGGGTTATGGCAGCAGGATCGGCAGTGGGATCGACAGCACG
129 CATGTCTAAGCCCCAATCGGACTGAGGGTTGTGGCAGCAGGA-CGGCAGTGGGATCGACAGCACG
* * * *
11587790 CAGAGGGGGACCGGGCTAATCCCCAGCTTGCACATTATGCCTCTCCGATCGGCCTCTCCGACAGG
193 CAGAGGGGGACCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGATCGG---CT-CGA-A-G
* *
11587855 CTGAGCTCCCGTATGCTCGTTTTATGGGTTGATTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
252 CTGAGCTCCCGTATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* *
11587920 ATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAAC
317 ATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * *
11587985 AAGTAAGGGGGATCAGGTCAATCCCCAGCTTGCGCATTCTGCCTCTTCGACCAGCTGAGCGCCCG
382 ACGTAAGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCG
*
11588050 CACGCCCGTTCCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
447 CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
* * * *
11588115 CAAGGGTTGTGGCAGCTGGATCGGCAACATGTAGAGGGGGACCGGGCTGATCCCCAGCTTGCACA
512 CAAGGGTTGTGGCAGCGGGACCGGCAGCATGTAGAGGGGGACCGGGCTGATCCCCGGCTTGCACA
* * * * *
11588180 TTATGCCTCTCCGGTCGGCTCAGTGCCCAGACGCTCATTTTATGGGTTTACTTAGGCATACGGAG
577 TTATGCCTCTTCGGTCGGCTCAGTGCCCAGACGCTCGTTTCATGGGTTGACTTATGCATACGGAG
* *
11588245 TTCATTCCTAGTCTAAGATC-AGATCAGACCGAGGGTTG
642 TTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTG
* * * * * * *
11588283 C-GTAGCAAGATCGACAGTACGCAGGGGGGGATCGGGTC-GATCCTCGGCTTGCACATTCTGCCT
1 CAGCAGCAGGATCGACAGCACGCA-GGGGGGACCGAGTCTGATCCCCGGCTTGCGCATTCTGCCT
* * ***
11588346 CTCCAGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATAAAGTTCATTCC
65 CTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
* *
11588411 ATGTCTAAGCTTACGGAGTTCATTCCTAGTCTAAGATCGAACCGGACTGAGGGTTGCGACAGCAG
130 ATG--T---C-TA---AG--C---CC----C--A-AT-----CGGACTGAGGGTTGTGGCAGCAG
* * * * * **
11588476 GACCAGCAGTAGGATCGACAGCATGCAG-GGGGCGACTGGGTTGATCCTTGGCTTACGCATTATG
169 GA-CGGCAGTGGGATCGACAGCACGCAGAGGGG-GACCGGGCTGATCCCCGGCTTACGCATTATG
* *
11588540 CCTCT----TCGG-TC-AA-CTGAG-TGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
232 CCTCTCCGATCGGCTCGAAGCTGAGCT-CCCGTATGCTCGTTTCATGGGTTGACTTAGGCATACG
* * * * *
11588597 GACTTCATCCCC-GATCTAAGCATAC-AGAGTTCATTGCCAATCTATGATCGGA-CTGGATCGAG
296 GAGTTCATCCCCAG-TCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAG
* * * * *
11588659 GGTTGCGGCAGCAGGATCTGTAGCACG-CAGGGGGACCTGGTCGATCCCCGGCTTGTGCATTCTG
358 GGTTGCGGCAGCAGGATCGGCAGCACGTAAGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTG
* * * *
11588723 CCTCTCCGGCCGGCTGAGCGCCCACACGTCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
423 CCTCTCCGGCCAGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
* * *
11588788 TCCATGTCTAAGCCCTAGCCAGACCAAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGGGGGA
488 TCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCGGGACCGGCAGCATGTAGAGGGGGA
* * * * * * * *
11588853 CCGGG-TCGATCCCTGGCTTGCGCATTATGCCTCTTC-GACTGGGTCAGTACCCACACACTTGTT
553 CCGGGCT-GATCCCCGGCTTGCACATTATGCCTCTTCGGTC-GGCTCAGTGCCCAGACGCTCGTT
* * * * * *
11588916 TCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAATGTAAGATCGGACCGGACCAAGGGTTG
616 TCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTG
* * ** * * ** *
11588980 CGGCAGCAGGATCGATAGCACATAGGGGGGCACCG-GGCTGAACCCCGGCTTGCTTATACTGCCT
1 CAGCAGCAGGATCGACAGCACGCAGGGGGG-ACCGAGTCTGATCCCCGGCTTGCGCATTCTGCCT
* * * *
11589044 CTCCGGTCGGTTAAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
65 CTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
*
11589109 ATGTCCAAGC
130 ATGTCTAAGC
11589119 ATACGGAGTT
Statistics
Matches: 1281, Mismatches: 182, Indels: 103
0.82 0.12 0.07
Matches are distributed among these distances:
672 25 0.02
673 183 0.14
674 3 0.00
676 2 0.00
678 1 0.00
680 1 0.00
681 2 0.00
684 3 0.00
685 113 0.09
686 371 0.29
687 4 0.00
689 2 0.00
690 1 0.00
691 2 0.00
692 1 0.00
693 1 0.00
694 2 0.00
696 5 0.00
697 260 0.20
698 209 0.16
699 2 0.00
700 1 0.00
701 1 0.00
702 1 0.00
703 2 0.00
705 1 0.00
706 2 0.00
707 4 0.00
710 4 0.00
711 72 0.06
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (679 bp):
CAGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGTCTGATCCCCGGCTTGCGCATTCTGCCTC
TCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
TGTCTAAGCCCCAATCGGACTGAGGGTTGTGGCAGCAGGACGGCAGTGGGATCGACAGCACGCAG
AGGGGGACCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGATCGGCTCGAAGCTGAGCTCC
CGTATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGT
TCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAAGGG
GGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACGCCCGT
TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTG
TGGCAGCGGGACCGGCAGCATGTAGAGGGGGACCGGGCTGATCCCCGGCTTGCACATTATGCCTC
TTCGGTCGGCTCAGTGCCCAGACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCC
AGTCTAAGATCGAACCAGACCGAGGGTTG
Found at i:11588383 original size:158 final size:157
Alignment explanation
Indices: 11587918--11588419 Score: 512
Period size: 158 Copynumber: 3.2 Consensus size: 157
11587908 CCCAGTCTAA
11587918 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGC
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGC-GCAGCAGGATCGGC
* * * * * *
11587982 AACAAGTA-AGGGGGATCAGGTCAATCCCCAGCTTGCGCATTCTGCCTCTTCGACCAGCTGAGCG
64 AACAAGTAGAGGGGGATCGGGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGTCGA-CTGAGCG
* *
11588046 CCCGCACGCCCGTTCCATGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * * * *
11588076 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCAAGGGTTGTGGCAGCTGGATCGGC
1 GCATACGAAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGAGGGTTG-CGCAGCAGGATCGGC
* * * * * *
11588140 AACATGTAGAGGGGGACCGGG-CTGATCCCCAGCTTGCACATTATGCCTCTCCGGTCGGCTCAGT
64 AACAAGTAGAGGGGGATCGGGTC-GATCCCCAGCTTGCACATTCTGCCTCTCC-GTCGACTGAGC
* * **
11588204 GCCCAG-ACGCTCATTTTATGGGTTTACTTAG
127 GCCC-GCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
11588235 GCATACGGAGTTCATTCC-TAGTCTAAGATCAGATCAGACCGAGGGTTGCGTAGCAAGATCGACA
1 GCATACGAAGTTCATTCCAT-GTCTAAGATCAGATCGGACCGAGGGTTGCGCAGCAGGATCGGCA
** * * * * *
11588299 GTACGCAGGGGGGGATCGGGTCGATCCTCGGCTTGCACATTCTGCCTCTCCAGTCGACTGAGCGC
65 ACAAGTAGAGGGGGATCGGGTCGATCCCCAGCTTGCACATTCTGCCTCTCC-GTCGACTGAGCGC
11588364 CCGCACGCTCGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
**
11588393 GCATATAAAGTTCATTCCATGTCTAAG
1 GCATACGAAGTTCATTCCATGTCTAAG
11588420 CTTACGGAGT
Statistics
Matches: 275, Mismatches: 57, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
157 4 0.01
158 165 0.60
159 103 0.37
160 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGCGCAGCAGGATCGGCAA
CAAGTAGAGGGGGATCGGGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGTCGACTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:11588629 original size:197 final size:197
Alignment explanation
Indices: 11588291--11588674 Score: 470
Period size: 197 Copynumber: 1.9 Consensus size: 197
11588281 TGCGTAGCAA
* * * * *
11588291 GATCGACAGTACGCAGGGGGGGATCGGGTCGATCCTCGGCTTGCACATTCTGCCTCTCCAGTCGA
1 GATCGACAGCACGCAGGGGGCGATCGGGTCGATCCTCGGCTTACACATTATGCCTCTCCAGTCAA
* * * *
11588356 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATAAAGTTCATTCCATGTCTAAGC
66 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAACTTCATTCCACGTCTAAGC
* * *
11588421 TTACGGAGTTCATT-CCTAGTCTAAGATCGAACCGGA-CTGAGGGTTGCGACAGCAGGACCAGCA
131 ATACAGAGTTCATTGCC-AATCTAAGATCGAACCGGATC-GAGGGTTGCGACAGCAGGACCAGCA
11588484 GTAG
194 GTAG
* * * * * *
11588488 GATCGACAGCATGCAGGGGGCGA-CTGGGTTGATCCTTGGCTTACGCATTATGCCTCTTCGGTCA
1 GATCGACAGCACGCAGGGGGCGATC-GGGTCGATCCTCGGCTTACACATTATGCCTCTCCAGTCA
* ** *
11588552 ACTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGACTTCA-TCCCCGATCTAA
65 ACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAACTTCATTCCACG-TCTAA
* * * *
11588616 GCATACAGAGTTCATTGCCAATCTATGATCGGACTGGATCGAGGGTTGCGGCAGCAGGA
129 GCATACAGAGTTCATTGCCAATCTAAGATCGAACCGGATCGAGGGTTGCGACAGCAGGA
11588675 TCTGTAGCAC
Statistics
Matches: 157, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
196 5 0.03
197 149 0.95
198 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (197 bp):
GATCGACAGCACGCAGGGGGCGATCGGGTCGATCCTCGGCTTACACATTATGCCTCTCCAGTCAA
CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAACTTCATTCCACGTCTAAGC
ATACAGAGTTCATTGCCAATCTAAGATCGAACCGGATCGAGGGTTGCGACAGCAGGACCAGCAGT
AG
Found at i:11588848 original size:697 final size:699
Alignment explanation
Indices: 11587869--11589133 Score: 1727
Period size: 697 Copynumber: 1.8 Consensus size: 699
11587859 GCTCCCGTAT
* * *
11587869 GCTCGTTTTATGGGTTGATTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGACTTCATCCCCAGTCTAAGCATACGAAGTTCATT
* *
11587934 CCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAACAAGTAAGGGGGATC
66 CCCAATCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAACAAGTAAGGGGGACC
* *
11587999 AGGTCAATCCCCAGCTTGCGCATTCTGCCTCTTCGACCAGCTGAGCGCCCGCACGCCCGTTCCAT
131 AGGTCAATCCCCAGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCCCACACGCCCGTTCCAT
*
11588064 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCA
196 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCA
* * *
11588129 GCTGGATCGGCAACATGTAGAGGGGGACCGGG-CTGATCCCCAGCTTGCACATTATGCCTCTCCG
261 GCGGGACCGGCAACACGTAGAGGGGGACCGGGTC-GATCCCCAGCTTGCACATTATGCCTCTCCG
* * * * * * * *
11588193 -GTCGGCTCAGTGCCCAGACGCTCATTTTATGGGTTTACTTAGGCATACGGAGTTCATTCCTAGT
325 ACT-GGCTCAGTACCCACACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAAT
* * * * * * *
11588257 CTAAGATCAGATCAGACCGAGGGTTGC-GTAGCAAGATCGACAGTACGCAGGGGGGGATCGGG-T
389 CTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAAGATCGACAGCACACAGGGGGGCACCGGGCT
* * * * *
11588320 CGATCCTCGGCTTGCACATTCTGCCTCTCCAGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGT
454 -GAACCCCGGCTTGCACATACTGCCTCTCCAGTCGACTAAGCACCCGCACGCTCGTTTCATGGGT
* * *
11588385 TGGCTTAGGCATATAAAGTTCATTCCATGTCTAAGCTTACGGAGTTCATTCCTAGTCTAAGATCG
518 TGGCTTAGGCATACAAAGTTCATTCCATGTCCAAGCATACGGAGTTCATTCCTAGTCTAAGATCG
11588450 AACCGGACTGAGGGTTGCGACAGCAGGACCAGCAGTAGGATCGACAGCATGCAGGGGGCGACTGG
583 AACCGGACTGAGGGTTGCGACAGCAGGACCAGCAGTAGGATCGACAGCATGCAGGGGGCGACTGG
11588515 GTTGATCCTTGGCTTACGCATTATGCCTCTTCGGTCAACTGAGTGCCCGCAC
648 GTTGATCCTTGGCTTACGCATTATGCCTCTTCGGTCAACTGAGTGCCCGCAC
11588567 GCTCGTTTCATGGGTTGACTTAGGCATACGGACTTCATCCCC-GATCTAAGCATAC-AGAGTTCA
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGACTTCATCCCCAG-TCTAAGCATACGA-AGTTCA
* * * * * * * * *
11588630 TTGCCAATCTATGATCGGA-CTGGATCGAGGGTTGCGGCAGCAGGATCTGTAGCACG-CAGGGGG
64 TTCCCAATCTAAGATCAGATC-GGACCGAGGGTTGCGGCAGCAGGATCGGCAACAAGTAAGGGGG
* * * * * * * *
11588693 ACCTGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACACGTCCGTTT
128 ACCAGGTCAATCCCCAGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCCCACACGCCCGTTC
* *
11588758 CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCAAGGGTTGTG
193 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTG
* ** * *
11588823 GCAGCGGGACCGGCAGCACGTAGAGGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTT
258 GCAGCGGGACCGGCAACACGTAGAGGGGGACCGGGTCGATCCCCAGCTTGCACATTATGCCTCTC
* ** * *
11588888 CGACTGGGTCAGTACCCACACACTTGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAA
323 CGACTGGCTCAGTACCCACACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAA
* * * * * *
11588953 TGTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGATAGCACATAGGGGGGCACCGGGC
388 TCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAAGATCGACAGCACACAGGGGGGCACCGGGC
** * ** *
11589018 TGAACCCCGGCTTGCTTATACTGCCTCTCCGGTCGGTTAAGCACCCGCACGCTCGTTTCGTGGGT
453 TGAACCCCGGCTTGCACATACTGCCTCTCCAGTCGACTAAGCACCCGCACGCTCGTTTCATGGGT
**
11589083 TGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGCATACGGAGTTCATTC
518 TGGCTTAGGCATACAAAGTTCATTCCATGTCCAAGCATACGGAGTTCATTC
11589134 ACAATCTAAG
Statistics
Matches: 483, Mismatches: 77, Indels: 14
0.84 0.13 0.02
Matches are distributed among these distances:
697 253 0.52
698 229 0.47
699 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (699 bp):
GCTCGTTTCATGGGTTGACTTAGGCATACGGACTTCATCCCCAGTCTAAGCATACGAAGTTCATT
CCCAATCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAACAAGTAAGGGGGACC
AGGTCAATCCCCAGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCCCACACGCCCGTTCCAT
GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCA
GCGGGACCGGCAACACGTAGAGGGGGACCGGGTCGATCCCCAGCTTGCACATTATGCCTCTCCGA
CTGGCTCAGTACCCACACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCT
AAGATCAGACCAGACCAAGGGTTGCGGCAGCAAGATCGACAGCACACAGGGGGGCACCGGGCTGA
ACCCCGGCTTGCACATACTGCCTCTCCAGTCGACTAAGCACCCGCACGCTCGTTTCATGGGTTGG
CTTAGGCATACAAAGTTCATTCCATGTCCAAGCATACGGAGTTCATTCCTAGTCTAAGATCGAAC
CGGACTGAGGGTTGCGACAGCAGGACCAGCAGTAGGATCGACAGCATGCAGGGGGCGACTGGGTT
GATCCTTGGCTTACGCATTATGCCTCTTCGGTCAACTGAGTGCCCGCAC
Found at i:11588906 original size:159 final size:158
Alignment explanation
Indices: 11588687--11589118 Score: 428
Period size: 159 Copynumber: 2.7 Consensus size: 158
11588677 TGTAGCACGC
* * * * * *
11588687 AGGGGGACCTGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCACACG-
1 AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCC-GCTGGCTAAGCACCCACACGC
*
11588751 TCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCAGACCAA
65 T-CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGACCAGACCAA
* * * *
11588815 GGGTTGTGGCAGCGGGACCGGCAGCACGTAG
128 GGGTTGCGGCAGCAGGACCGACAGCACATAG
* * * * * *
11588846 AGGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTTCGACTGGGTCAGTACCCACACAC
1 AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCG-CTGGCTAAGCACCCACACGC
* * * ** * *
11588911 TTGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAATG--TAAGATCGGACCGGACCAA
65 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CC-ATGTCTAAGCCCAGACCAGACCAA
* *
11588974 GGGTTGCGGCAGCAGGATCGATAGCACATAG
128 GGGTTGCGGCAGCAGGACCGACAGCACATAG
* ** * * *
11589005 -GGGGGCACCGGG-CTGAACCCCGGCTTGCTTA-TACTGCCTCTCCGGTCGGTTAAGCACCCGCA
1 AGGGGG-ACCGGGTC-GATCCCCGGCTTGCGCATTA-TGCCTCTCCGCT-GGCTAAGCACCCACA
*
11589067 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGC
62 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
11589119 ATACGGAGTT
Statistics
Matches: 221, Mismatches: 41, Indels: 22
0.78 0.14 0.08
Matches are distributed among these distances:
157 3 0.01
158 13 0.06
159 199 0.90
160 3 0.01
161 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGCTGGCTAAGCACCCACACGCT
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGACCAGACCAAGGG
TTGCGGCAGCAGGACCGACAGCACATAG
Found at i:11590129 original size:159 final size:160
Alignment explanation
Indices: 11589822--11590326 Score: 465
Period size: 159 Copynumber: 3.2 Consensus size: 160
11589812 CCCTATCTAA
* * * * ** * *
11589822 GCATACGGAGTTCATTCCCA-GTCTAAG-ATTGGACCGGACCGAGGGTGGCGACAGCAGGATCGG
1 GCATAGGGAGTTCATT-CCATGTCTAAGCATTAGACCAGACCAAGGGTTACGACAGCAGGACCGA
** * *
11589885 CAGCATACA-G-GGGGGACCGGACGATCCCCGACTTGCGCTTTCTACCTCTCT-AGCTGGCTGAG
65 CAGCACGCATGAGGGGGACCGGACGATCCCCGACTTGCGCATTCTACCTCTCTGA-CCGGCTGAG
* *
11589947 CGCCCGCACGCCCGTTTCATGGGTTGGCTTAG
129 CGCCCGCATGCTCGTTTCATGGGTTGGCTTAG
* * * * * *
11589979 GCATAGGGAGTTCATTCCATGTCTAAGCCTT-GGCCAGACCAAGGGTTATGGCAGCGGGACCGGC
1 GCATAGGGAGTTCATTCCATGTCTAAGCATTAGACCAGACCAAGGGTTACGACAGCAGGACCGAC
* * * * *
11590043 AGCACGC-TGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCTGACCGGCTCAGC
66 AGCACGCATGAGGGGGACCG-GACGATCCCCGACTTGCGCATTCTACCTCTCTGACCGGCTGAGC
* * ** *
11590107 ACCCGTATGCTCGTTTTGTGGGTTGACTTAG
130 GCCCGCATGCTCGTTTCATGGGTTGGCTTAG
* * * * * * * *
11590138 GCCT-GCGGAGTTCATTCCCA-ATCTAAG-ATTAGATCGGACCGAGGGTTGCGATAGCAGGATCG
1 GCATAG-GGAGTTCATT-CCATGTCTAAGCATTAGACCAGACCAAGGGTTACGACAGCAGGACCG
* * * * **
11590200 ACAGCACGCATGA-GGGGATCGGGTCGGTCCCCGACTTGCGCATTCTACCTCTCCGACCGATTGA
64 ACAGCACGCATGAGGGGGA-CCGGACGATCCCCGACTTGCGCATTCTACCTCTCTGACCGGCTGA
*
11590264 GCGCCCACATGCTCGTTTCATGGGTTGGCTTAG
128 GCGCCCGCATGCTCGTTTCATGGGTTGGCTTAG
*
11590297 GCATACGGAGTTCATTCCATGTCTAAGCAT
1 GCATAGGGAGTTCATTCCATGTCTAAGCAT
11590327 ACGGAGTTTA
Statistics
Matches: 274, Mismatches: 60, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 52 0.19
158 17 0.06
159 191 0.70
160 11 0.04
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (160 bp):
GCATAGGGAGTTCATTCCATGTCTAAGCATTAGACCAGACCAAGGGTTACGACAGCAGGACCGAC
AGCACGCATGAGGGGGACCGGACGATCCCCGACTTGCGCATTCTACCTCTCTGACCGGCTGAGCG
CCCGCATGCTCGTTTCATGGGTTGGCTTAG
Found at i:11590327 original size:26 final size:26
Alignment explanation
Indices: 11590297--11590349 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11590287 GTTGGCTTAG
11590297 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
11590323 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11590349 G
1 G
11590350 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11597901 original size:26 final size:26
Alignment explanation
Indices: 11597864--11597916 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11597854 GTTGACTTAG
11597864 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
11597890 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11597916 G
1 G
11597917 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11598196 original size:159 final size:157
Alignment explanation
Indices: 11598028--11598391 Score: 417
Period size: 159 Copynumber: 2.3 Consensus size: 157
11598018 CCCTCACGCC
* *
11598028 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCAAGGG
** * *
11598093 TTGTGCCAACGGGACCGACAACACGCAGCGAGGG-TCTGGGTCGATCCCCGACTTGCGCATTATG
66 TTACGCCAACAGGACCGACAACACGCAG-GAGGGATC-GGGTCGATCCCCGACTTACGCATTATG
*
11598157 CCTCTCCGACCGGCTCAGCGCCCGAATGCT
129 CCTCTCCG-CCGGCTCAGCACCCGAATGCT
* * ***** * * *
11598187 CGTTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATTGGATCAGATCGAGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCAGACCAAGG
* * * * * * *
11598251 GTTACGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGGTCCCCGACTTACGCATTCTGC
65 GTTACGCCAACAGGACCGACAACACGCAGGAGGGATCGGGTCGATCCCCGACTTACGCATTATGC
* * *
11598316 CTCTCCGCCGGCTGAGCACCTGCATGCT
130 CTCTCCGCCGGCTCAGCACCCGAATGCT
* *
11598344 CGTTTCGTAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
11598392 ATATGGAGTT
Statistics
Matches: 170, Mismatches: 32, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
156 3 0.02
157 56 0.33
158 36 0.21
159 72 0.42
160 3 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (157 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCAAGGG
TTACGCCAACAGGACCGACAACACGCAGGAGGGATCGGGTCGATCCCCGACTTACGCATTATGCC
TCTCCGCCGGCTCAGCACCCGAATGCT
Found at i:11598393 original size:26 final size:26
Alignment explanation
Indices: 11598364--11598416 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
11598354 GTTGGCTTAG
*
11598364 GCATACAGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCACTCCCA-GTCTAA
**
11598390 GCATATGGAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
11598416 G
1 G
11598417 ATCAGATCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:11598583 original size:26 final size:26
Alignment explanation
Indices: 11598554--11598607 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
11598544 GGGTTGACTT
11598554 AGCATACGGAGTTCATCCCCAGTCTA
1 AGCATACGGAGTTCATCCCCAGTCTA
* *
11598580 AGCATATGGAGTTCATTCCCAGTCTA
1 AGCATACGGAGTTCATCCCCAGTCTA
11598606 AG
1 AG
11598608 ATCGGACGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (26 bp):
AGCATACGGAGTTCATCCCCAGTCTA
Found at i:11598731 original size:183 final size:182
Alignment explanation
Indices: 11598207--11598766 Score: 598
Period size: 183 Copynumber: 3.0 Consensus size: 182
11598197 TTTGACTTAG
* * **
11598207 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATC-AGATCGAGGGTTACGGCAGCAGGATCGAC
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGA-CGAGATCGAGGGTTACGATAGCAGGATCGAC
* * * * *
11598271 AGCACGCAGGGGGGATCGGGTCGGTCCCCGACTTACGCATTCTGCCTCTCCGCCGGCTGAGCACC
65 AGCACGCA-GGGGGATCGGGTCGATCCCCGGCTTATGCATTCTACCTCTCCGCCGGCTGAGCGCC
* * * * *
11598336 TGCATGCTCGTTTCGTAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
129 CGCACGCTAGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * *
11598390 GCATATGGAGTTCACTCCCAGTCTAAGATCAGATCGAACTGAGGTTCGGAGAGG--ACTAGTAGT
1 GCATATGGAGTTCATTCCCAGTCTAAGATC-G---G-AC-GA-GATC-GAG-GGTTACGA-TAGC
* * *
11598453 AGGATCGACAGCACGTAGAGGGGATCGGGTCGATCCCCGGCTTGCT-CATTCTACCTCTCTGGCC
56 AGGATCGACAGCACGCAG-GGGGATCGGGTCGATCCCCGGCTT-ATGCATTCTACCTCTC-CGCC
* * * * * *
11598517 TGCTGAGTGCCCACACGCTAGTTTTGTGGGTTGACTTA-GCATACGGAGTTCATCCCCA-GTCTA
118 GGCTGAGCGCCCGCACGCTAGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTA
11598580 A
182 A
*
11598581 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACGAGATCGAGGGTTGCGATAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACGAGATCGAGGGTTACGATAGCAGGATCGACA
*
11598646 GCACACAGGGAGGA-CTGGG-CTGATCCCCGGCTTATGCATTCTACCTCTCCGACCGGCTGAGCG
66 GCACGCAGGG-GGATC-GGGTC-GATCCCCGGCTTATGCATTCTACCTCTCCG-CCGGCTGAGCG
*
11598709 CCCGCACGCCT-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
127 CCCGCACG-CTAGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
11598765 GC
1 GC
11598767 CCCAACCGGA
Statistics
Matches: 309, Mismatches: 43, Indels: 49
0.77 0.11 0.12
Matches are distributed among these distances:
182 8 0.03
183 115 0.37
184 30 0.10
185 2 0.01
186 2 0.01
187 3 0.01
188 1 0.00
189 1 0.00
190 7 0.02
191 104 0.34
192 36 0.12
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (182 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGGACGAGATCGAGGGTTACGATAGCAGGATCGACA
GCACGCAGGGGGATCGGGTCGATCCCCGGCTTATGCATTCTACCTCTCCGCCGGCTGAGCGCCCG
CACGCTAGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:11599630 original size:26 final size:26
Alignment explanation
Indices: 11599594--11599646 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11599584 GTTGACTTAG
11599594 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
11599620 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11599646 G
1 G
11599647 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11600134 original size:159 final size:157
Alignment explanation
Indices: 11599654--11600161 Score: 486
Period size: 159 Copynumber: 3.2 Consensus size: 157
11599644 AAGATCGAAC
* ** * * * ** * **
11599654 CGGACCGAGGGTTGCAGCAGTAGGACCGACAGCACG--TAGGGGGACCGGGCCGATCCCCAACTT
1 CGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGATAGGGCAGATCCCCCGCTT
* * * *
11599717 GTGTATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
66 GCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA
* *
11599782 GGGAGTTCATTCCATGTCTAAGCCCTAGC
131 CGGAGTTCATT-CATGTCTAAGCCC-AGA
* ** * * * *
11599811 CAGACCAAGGGTTGTGGCAGCGGGA-CTGACAGCATGCAGAGGGGGATCGGGCTGATCCCCCGCT
1 CGGACTGAGGGTTGTGGCAGCAGGATC-GACAGCACGCAGAGGGGGATAGGGCAGATCCCCCGCT
* * * * **
11599875 TGCGCATTATGCCTCTCCGGCCGGCTCAACGCCCGCACGCTCATTTCATGGGTTAACTTAGGCAT
65 TGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAT
* **
11599940 ACGGAGTTCATTCCTAGTCTAAGATCAGA
130 ACGGAGTTCATTCAT-GTCTAAGCCCAGA
* * **
11599969 CTGGACTGAGGCTTGTGGCAGCAGTATCGACAGCACGCAG-GGGGTGACTAGGGCAG-TCCCTGG
1 C-GGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGG-GA-TAGGGCAGATCCCCCG
* * * *
11600032 CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGACCGTACGCTCATTTCGTGTGTTGGCTTAGGC
63 CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGC
* * *
11600097 ATACGAAGTTCATTCAATGTCTAGGGCCCAGT
128 ATACGGAGTTCATTC-ATGTCTA-AGCCCAGA
* *
11600129 CGGACTGAGGGTTGTAGTAGCAGGATCGACAGC
1 CGGACTGAGGGTTGTGGCAGCAGGATCGACAGC
11600162 CCACACGCTC
Statistics
Matches: 283, Mismatches: 58, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
156 1 0.00
157 27 0.10
158 9 0.03
159 233 0.82
160 13 0.05
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.22
Consensus pattern (157 bp):
CGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGATAGGGCAGATCCCCCGCTT
GCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA
CGGAGTTCATTCATGTCTAAGCCCAGA
Found at i:11600227 original size:26 final size:26
Alignment explanation
Indices: 11600191--11600243 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11600181 GTTGACTTAG
11600191 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
11600217 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11600243 G
1 G
11600244 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11600722 original size:26 final size:26
Alignment explanation
Indices: 11600692--11600742 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
11600682 TTGTCTTAGG
*
11600692 CATACGAAGTTTATTCC-ATGTCTAAT
1 CATACGAAGTTCATTCCTA-GTCTAAT
*
11600718 CATACGGAGTTCATTCCTAGTCTAA
1 CATACGAAGTTCATTCCTAGTCTAA
11600743 GATTGGAGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (26 bp):
CATACGAAGTTCATTCCTAGTCTAAT
Found at i:11600868 original size:34 final size:34
Alignment explanation
Indices: 11600826--11600896 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
11600816 TCTACCAAAT
*
11600826 AAATAGAAGGATCCCATCTACCAAATTTGGCGAC
1 AAATAGAAGGATCCCATCTACCAAATTTGGCAAC
11600860 AAATAGAAGGATCCCATCTACCAAATTTGGCAAC
1 AAATAGAAGGATCCCATCTACCAAATTTGGCAAC
11600894 AAA
1 AAA
11600897 ACTCATTCTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.42, C:0.23, G:0.15, T:0.20
Consensus pattern (34 bp):
AAATAGAAGGATCCCATCTACCAAATTTGGCAAC
Found at i:11601510 original size:159 final size:157
Alignment explanation
Indices: 11601337--11601691 Score: 410
Period size: 157 Copynumber: 2.2 Consensus size: 157
11601327 CCTGTTTCGG
* * * ** **
11601337 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAA-TTCCCAGTCAGACCGAGGGTTGTGGC
1 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGAT--CAACCAGACCGAGGGTTGCAGC
* * * *
11601401 AGCAGGATCGGTAGCACGTAGAGGCAGATCGGGCCGATCCCC-AGCTTGCGTATTATGCCTCTCC
64 AGCAGGATCGATAGCACGCAG-GGCAGATCGAGCCGATCCCCGA-CTTGCGCATTATGCCTCTCC
* *
11601465 GGTCGATTCAGTGCCTGCACGCTCATTTCAT
127 GGTCGACTCAGCGCCTGCACGCTCATTTCAT
* **
11601496 GGGTTGACTTAGGCATACGGAGTTCATTCTCA-GTCTAAGATCAACCAGATTGAGGGTTGCAGCA
1 GGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGATCAACCAGACCGAGGGTTGCAGCA
* ** *
11601560 GTAGGATCGATAGCACGCAGGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGT
65 GCAGGATCGATAGCACGCAGGGCAGATCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGT
* * * *
11601625 CGGCTGAGCGCCTGCACGCTCGTTTCGT
130 CGACTCAGCGCCTGCACGCTCATTTCAT
* *
11601653 AGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
1 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
11601692 CATACAGAGT
Statistics
Matches: 165, Mismatches: 27, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
156 2 0.01
157 93 0.56
158 35 0.21
159 32 0.19
160 3 0.02
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (157 bp):
GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAACCAGACCGAGGGTTGCAGCAG
CAGGATCGATAGCACGCAGGGCAGATCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTC
GACTCAGCGCCTGCACGCTCATTTCAT
Found at i:11602080 original size:26 final size:26
Alignment explanation
Indices: 11602046--11602096 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11602036 TTGACATAGG
11602046 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCCAGTCTAAC
* *
11602072 CATAGGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
11602097 GATCAGACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAC
Found at i:11602398 original size:159 final size:157
Alignment explanation
Indices: 11602072--11602572 Score: 489
Period size: 158 Copynumber: 3.2 Consensus size: 157
11602062 CCAGTCTAAC
* * ** *
11602072 CATAGGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTACGGCAGCAAGATCGGTAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATCGAGGGTTGTGGCAGCAAGATCGATAG
* * * * ** *
11602137 CACGTAGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTC-TCTGATCGGCTGAGTGCC
66 CACGTAAGGGGGATCGGGTCGATCCCTAGCTTACGCATTCTGCCTCTTC-GGCCAGCT-AGTGCC
* *
11602201 CGCACGTC-CATTTTGTGGGTTGGCTTAGG
129 TGCAC-TCTCATTTCGTGGGTTGGCTTAGG
* ** * *
11602230 CATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAAATCGAGGGTTGTGGCAGCATGACCGAT
1 CATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAAATCGAGGGTTGTGGCAGCAAGATCGAT
* *
11602293 AGCACGTAAAGGGGGATCGGGCCGATCCCTAGCTTACGCATTATGCCTCTTCGGCCAGCTCAGTG
64 AGCACGT-AAGGGGGATCGGGTCGATCCCTAGCTTACGCATTCTGCCTCTTCGGCCAGCT-AGTG
* * **
11602358 CCTGCACTCTCATTTCATGGGTTGACTTCTG
127 CCTGCACTCTCATTTCGTGGGTTGGCTTAGG
* * * *
11602389 CATACGGAGTTCATTCCCAGTCTATGATCAGACCAGA-CTGAGGGTTGTGGTAGCAAGATCGACA
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATC-GAGGGTTGTGGCAGCAAGATCGATA
* * * * * * *
11602453 GCACG-CAGGGGGTATCAGGTCGATCCCCAACTTGA-GTATTCTACCTCTTCGGCCAGCT-GAGC
65 GCACGTAAGGGGG-ATCGGGTCGATCCCTAGCTT-ACGCATTCTGCCTCTTCGGCCAGCTAGTGC
*
11602515 ACTCGCACGCTCATTTCGTGGGTTGGCTTAGG
128 -CT-GCACTCTCATTTCGTGGGTTGGCTTAGG
11602547 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
11602573 CATATGGAGT
Statistics
Matches: 282, Mismatches: 48, Indels: 26
0.79 0.13 0.07
Matches are distributed among these distances:
156 3 0.01
157 14 0.05
158 140 0.50
159 120 0.43
160 5 0.02
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (157 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATCGAGGGTTGTGGCAGCAAGATCGATAG
CACGTAAGGGGGATCGGGTCGATCCCTAGCTTACGCATTCTGCCTCTTCGGCCAGCTAGTGCCTG
CACTCTCATTTCGTGGGTTGGCTTAGG
Found at i:11602596 original size:26 final size:26
Alignment explanation
Indices: 11602546--11602598 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11602536 GTTGGCTTAG
*
11602546 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
11602572 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
11602598 G
1 G
11602599 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:11609170 original size:26 final size:26
Alignment explanation
Indices: 11609134--11609184 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
11609124 GACTTAGGCT
11609134 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
11609160 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
11609185 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:11609491 original size:160 final size:159
Alignment explanation
Indices: 11609292--11609663 Score: 399
Period size: 158 Copynumber: 2.3 Consensus size: 159
11609282 GAGCGCCTGT
* * * * * * *
11609292 ACGCTCGTTTCATGGGTTGTCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAG-CTGGAC
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAAC
* * ** * * * *
11609356 CAAGGGTTGTGGGCAGTGGGATCGGTAGCATACCGAGAGGGATCGAGCCGATCCCTGACTTGCGC
66 CAAGGGTTAT-GACAGCAGGATCGATAGCACACAG-GAGGGATCGAGCCGATCCCTGACTTGCAC
*
11609421 ATTATGCCTCTCTGACCGGCTCAGCACCCGC
129 ATTATACCTCTCTGACCGGCTCAGCACCCGC
* *
11609452 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAA
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGAA
* * * * * *
11609515 CCGAGGGTTATGACAGCAGGATCGATAGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCACA
65 CCAAGGGTTATGACAGCAGGATCGATAGCACACAGGAGGGATCGAGCCGATCCCTGACTTGCACA
* * *
11609580 TTCTACCTCTCTGACCGGCTGAGCACCTGC
130 TTATACCTCTCTGACCGGCTCAGCACCCGC
* * * ** *
11609610 ACGCTTGTTTTGTGGGTTGGCTTAGTTATACGAAGTTCATTCCATGTCTAAGCA
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
11609664 TATGGAGTTC
Statistics
Matches: 174, Mismatches: 34, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
157 3 0.02
158 92 0.53
159 21 0.12
160 56 0.32
161 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.26
Consensus pattern (159 bp):
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAAC
CAAGGGTTATGACAGCAGGATCGATAGCACACAGGAGGGATCGAGCCGATCCCTGACTTGCACAT
TATACCTCTCTGACCGGCTCAGCACCCGC
Found at i:11609599 original size:158 final size:157
Alignment explanation
Indices: 11609158--11609661 Score: 439
Period size: 160 Copynumber: 3.2 Consensus size: 157
11609148 CCCAGTCTAA
*
11609158 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACC-AGACCGAGGGTTGCGGCAGCAGGATCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGA-ACCGAGGGTTGTGGCAGCAGGATC-G
* * * * * * *
11609221 CAGCACGCAGGGGGGGA-CAAGGCCAAT-CCTCGGCTTACGCATTCTACGTCT-TCGATCGAC-C
63 TAGCACGCA-GGGGGGATC-GGGCCGATCCCT-GGCTTGCGCATTCTACCTCTCT-GACCGGCTC
* * * *
11609282 GAGCGCCTGTACGCTCGTTTCATGGGTTGTCTTAG
124 -AGCACCTGCACGCTCGTTTCGTGGGTTGACTTAG
* ** ** * * * **
11609317 GCATAGGGAGTTCATTCCTTGTCTAAGCCCCAG-CTGGACCAAGGGTTGTGGGCAGTGGGATCGG
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGAACCGAGGGTTGT-GGCAGCAGGATC-G
** * * * * * *
11609381 TAGCATACCGAGAGGGATCGAGCCGATCCCTGACTTGCGCATTATGCCTCTCTGACCGGCTCAGC
63 TAGCACGCAG-GGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCTGACCGGCTCAGC
* *
11609446 ACCCGCACGCTCATTTCGTGGGTTGACTTAG
127 ACCTGCACGCTCGTTTCGTGGGTTGACTTAG
* *
11609477 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTATGACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGATCG-TA
* * *
11609542 GCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCACATTCTACCTCTCTGACCGGCTGAGCACC
65 GCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCTGACCGGCTCAGCACC
* * *
11609607 TGCACGCTTGTTTTGTGGGTTGGCTTAG
130 TGCACGCTCGTTTCGTGGGTTGACTTAG
** *
11609635 TTATACGAAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
11609662 CATATGGAGT
Statistics
Matches: 269, Mismatches: 64, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
157 3 0.01
158 93 0.35
159 55 0.20
160 111 0.41
161 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGATCGTAG
CACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCTGACCGGCTCAGCACCT
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:11610381 original size:157 final size:159
Alignment explanation
Indices: 11610183--11610479 Score: 413
Period size: 157 Copynumber: 1.9 Consensus size: 159
11610173 TACACGTCCA
* * *
11610183 TTTTATGGGTTAGCTTAGGCATGGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTT
1 TTTTATGGGTTAGCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
* * * *
11610248 GTGGCAGC-AGGATCTGCAACACGCA-AG-GGGATCGGGCCGATCCTCGACTTGCGCATTCTGCC
66 GTGGCAGCGA-GACCGGCAACACGCAGAGAGGGATCGGGCCGATCCCCGACTTGCGCATTATGCC
11610310 TC-TCTGACCGGTTGAGCGCTCACATGTTGT
130 TCTTC-GACCGGTTGAGCGCTCACATGTTGT
* * **
11610340 TTTTGTGGGTTGGCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTT
1 TTTTATGGGTTAGCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
* ** *
11610405 GTGGCAGCGAGACCGGTAACACGCAGAGAGGGATCGGGTTGATCCCCGGCTTGCGCATTATGCCT
66 GTGGCAGCGAGACCGGCAACACGCAGAGAGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCT
11610470 CTTCGACCGG
131 CTTCGACCGG
11610480 CTCAGTGCCC
Statistics
Matches: 121, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
157 78 0.64
158 3 0.02
159 38 0.31
160 2 0.02
ACGTcount: A:0.18, C:0.25, G:0.32, T:0.25
Consensus pattern (159 bp):
TTTTATGGGTTAGCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
GTGGCAGCGAGACCGGCAACACGCAGAGAGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCT
CTTCGACCGGTTGAGCGCTCACATGTTGT
Found at i:11610527 original size:159 final size:158
Alignment explanation
Indices: 11610188--11610862 Score: 560
Period size: 159 Copynumber: 4.3 Consensus size: 158
11610178 GTCCATTTTA
** * *
11610188 TGGGTT-AGCTTAGGCATGGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGG
1 TGGGTTGA-CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGG
* * * *
11610252 CAGC-AGGATCTGCAACACGCAA-GGGGA-TCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTC
65 CAGCGA-GACCGGCAACACGCAAGGGGGACT-GGGCCGATCCCCGACTTGCGCATTATGCCTCTC
* * * * * * *** ** *
11610314 TGACCGGTTGAGCGCTCACATGTTGTTTTTG
128 CGACCGGCTCAGTGCCCGCACACTCATTTCG
* * * *
11610345 TGGGTTGGCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGC
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGC
* * ** * *
11610410 AGCGAGACCGGTAACACGCAGAGAGGGA-TCGGGTTGATCCCCGGCTTGCGCATTATGCCTCTTC
66 AGCGAGACCGGCAACACGCA-AGGGGGACT-GGGCCGATCCCCGACTTGCGCATTATGCCTCTCC
* *
11610474 GACCGGCTCAGTGCCCGTACACTCATTTCA
129 GACCGGCTCAGTGCCCGCACACTCATTTCG
* ** * *
11610504 TGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGCG
1 TGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTG
* * * * * *
11610567 ACAGTCG-GATCGACAGCACGCAAGGGGGACTGGGCTGATCCCCTG-CTTGCGCATTTTGCCTCT
64 GCAG-CGAGACCGGCAACACGCAAGGGGGACTGGGCCGATCCCC-GACTTGCGCATTATGCCTCT
** * ** *
11610630 CCGGTCGGCTGAGTGCCCGCAGGCTCGTTTCG
127 CCGACCGGCTCAGTGCCCGCACACTCATTTCG
* * * ** *
11610662 TAGGTTGGCTCAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTAGGACCGAGGGTTGTGGT
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGC
* * * * * * * *
11610727 AGCGGGACTGGCAGCACGTAGAGGGGGACTAGGTCGATCCCCGACTTGCACATTATGCCTCTCCA
66 AGCGAGACCGGCAACACGCA-AGGGGGACTGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCG
* * * *
11610792 ATCGGCTCAGTGGCCGCACGCTAAATTTCG
130 ACCGGCTCAGTGCCCGCACACT-CATTTCG
*
11610822 TGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
1 TGGGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAGC
11610863 ATACGGACTT
Statistics
Matches: 414, Mismatches: 88, Indels: 29
0.78 0.17 0.05
Matches are distributed among these distances:
157 78 0.19
158 121 0.29
159 169 0.41
160 43 0.10
161 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
TGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGC
AGCGAGACCGGCAACACGCAAGGGGGACTGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGA
CCGGCTCAGTGCCCGCACACTCATTTCG
Found at i:11610679 original size:158 final size:157
Alignment explanation
Indices: 11610344--11610863 Score: 473
Period size: 158 Copynumber: 3.3 Consensus size: 157
11610334 TGTTGTTTTT
* * * * *
11610344 GTGGGTTGGCCTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCT-GGACCGAGGGTTGT
1 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCACCAG-TAGGACCGAGGGTTGC
* * * ** * * *
11610407 GGCAGCGAGACCGGTAACACGCAGAGAGGGA-TCGGGTTGATCCCCGGCTTGCGCATTATGCCTC
64 GACAGCGGGACTGACAGCACGCAGAGGGGGACT-AGG-TGATCCCC-GCTTGCGCATTATGCCTC
* * * *
11610471 TTCGACCGGCTCAGTGCCCGTACACTCATTTC
126 TCCGATCGGCTCAGTGCCCGCACGCTCATTTC
* * * *
11610503 ATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAG-ATCAG-ACCGGATCGAGGGTTGC
1 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACCAGTA--GGACCGAGGGTTGC
* *
11610566 GACAGTC-GGA-TCGACAGCACGCA-AGGGGGACTGGGCTGATCCCCTGCTTGCGCATTTTGCCT
64 GACAG-CGGGACT-GACAGCACGCAGAGGGGGACTAGG-TGATCCCC-GCTTGCGCATTATGCCT
* * * *
11610628 CTCCGGTCGGCTGAGTGCCCGCAGGCTCGTTTC
125 CTCCGATCGGCTCAGTGCCCGCACGCTCATTTC
* * * * *
11610661 GTAGGTTGGCTCAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAGTAGGACCGAGGGTTGTG
1 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCACCAGTAGGACCGAGGGTTGCG
** * * *
11610725 GTAGCGGGACTGGCAGCACGTAGAGGGGGACTAGGTCGATCCCCGACTTGCACATTATGCCTCTC
65 ACAGCGGGACTGACAGCACGCAGAGGGGGACTAGGT-GATCCCCG-CTTGCGCATTATGCCTCTC
* * *
11610790 CAATCGGCTCAGTGGCCGCACGCTAAATTTC
128 CGATCGGCTCAGTGCCCGCACGCT-CATTTC
*
11610821 GTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
1 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
11610864 TACGGACTTC
Statistics
Matches: 289, Mismatches: 55, Indels: 33
0.77 0.15 0.09
Matches are distributed among these distances:
157 4 0.01
158 122 0.42
159 117 0.40
160 43 0.15
161 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACCAGTAGGACCGAGGGTTGCGA
CAGCGGGACTGACAGCACGCAGAGGGGGACTAGGTGATCCCCGCTTGCGCATTATGCCTCTCCGA
TCGGCTCAGTGCCCGCACGCTCATTTC
Found at i:11610874 original size:26 final size:26
Alignment explanation
Indices: 11610835--11610887 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11610825 GTTGACTTAG
*
11610835 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
* *
11610861 GCATACGGACTTCATTCTCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
11610887 G
1 G
11610888 ATCGGAATCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCAGTCTAA
Found at i:11611260 original size:159 final size:159
Alignment explanation
Indices: 11610935--11611377 Score: 374
Period size: 159 Copynumber: 2.8 Consensus size: 159
11610925 TAGTAGGATC
* * * * * * * * * * *
11610935 GACAGCACGCATGGGGGGATCGGGTCGATCCCCAGCTTG-TGCATTCTACCTCTCTGACCGACTG
1 GACAGCACGCA-GGAGGGACCGGGCCGATCCCCGGCTTGCCGCATTATGCCGCTCCGACAGACTC
* ** * * * *
11610999 AGCGCCCGCCCGCTCGTTTCATGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
65 AGCACCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCC
* * *
11611064 AACCGAACTGAGGGTTGTGGCAGCGGGAAT
130 AACCGAACCGAGGGTTGCGGCAGCAGGAAT
* * * * * * * * *
11611094 GATAGCACTCAGAGATGGACTGGGTCGATCCTCGGCTTG-CGCATTATGCCTCTCTGGCA-AGCT
1 GACAGCACGCAG-GAGGGACCGGGCCGATCCCCGGCTTGCCGCATTATGCCGCTCCGACAGA-CT
* * *
11611157 CAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGAT
64 CAGCACCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGAC
** * * *
11611221 CGGATCGGACCGAGGGTTGCGGTAGCAGG-AT
128 CCAACCGAACCGAGGGTTGCGGCAGCAGGAAT
* * * * *
11611252 CGACAGCACGCAGGGGGGACCGGGCCGCTCCCCGGCTTGCCGCATTCTGCCGCTCCGACCGACTG
1 -GACAGCACGCAGGAGGGACCGGGCCGATCCCCGGCTTGCCGCATTATGCCGCTCCGACAGACTC
* * * **
11611317 AGCGCCCGTACGCTTGTTTCGTGGGTTGGCTTAAACATACGGAGTTCATTCCATGTCTAAG
65 AGCACCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
11611378 CATACTGAGT
Statistics
Matches: 224, Mismatches: 53, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
158 27 0.12
159 193 0.86
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
GACAGCACGCAGGAGGGACCGGGCCGATCCCCGGCTTGCCGCATTATGCCGCTCCGACAGACTCA
GCACCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCA
ACCGAACCGAGGGTTGCGGCAGCAGGAAT
Found at i:11611401 original size:26 final size:26
Alignment explanation
Indices: 11611352--11611402 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
11611342 TTGGCTTAAA
*
11611352 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATATCTAAG
*
11611378 CATACTGAGTTCATTCCCA-ATCTAA
1 CATACGGAGTTCATT-CCATATCTAA
11611403 ATCGGATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATATCTAAG
Found at i:11611616 original size:194 final size:196
Alignment explanation
Indices: 11611247--11611628 Score: 447
Period size: 194 Copynumber: 2.0 Consensus size: 196
11611237 TTGCGGTAGC
* * **
11611247 AGGATCGACAGCACGCAGGGGGGACCGGGCCGCTCCCCGGCTTGCCGCATTCTGCCGCTCCGACC
1 AGGATCGACAACACGCAGGGGGGACCAGGCCAATCCCCGGCTTGCCGCATTCTGCCGCTCCGACC
* * * *
11611312 GACTGAGCGCCCGTACGCTTGTTTCGTGGGTTGGCTTAAACATACGGAGTTCATTCCATGTCTAA
66 GACTAAGCGCCCGTACGCTTGTTTCATGGGTTGACTTAAACATACGGAGTTCATCCCATGTCTAA
** *
11611377 GCATACTGAGTTCATTCCCAATCTAAATCGGATCGGACTGAGGGTTGCAGTAGCAGGACCGACAG
131 GCATACTGAGTTCATTCCCAATCTAAATCAAATCGGACTGAGGGTTGCAGCAGCAGGACCGACAG
11611442 T
196 T
* * * * *
11611443 AGGATCGACAACACGTA-GGGGGACCAGGCCAATCCCCGGCTTGCC-TATTTTGCCTCTCTGACC
1 AGGATCGACAACACGCAGGGGGGACCAGGCCAATCCCCGGCTTGCCGCATTCTGCCGCTCCGACC
** * * **
11611506 GACTAAGCTTCGGTAGGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTA
66 GACTAAGCGCCCGTACGCTTGTTTCATGGGTTGACTTAAACATACGGAGTTCAT-CCCATGTCTA
*
11611570 AGCATAC-GAAGTTCATT-CCAAGTC-AAGATCAAA-CTGGA-TCGAGGGTTGCGGCAGCAGGA
130 AGCATACTG-AGTTCATTCCCAA-TCTAA-ATCAAATC-GGACT-GAGGGTTGCAGCAGCAGGA
11611629 TTGGCAGCAC
Statistics
Matches: 157, Mismatches: 23, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
193 9 0.06
194 105 0.67
195 28 0.18
196 15 0.10
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (196 bp):
AGGATCGACAACACGCAGGGGGGACCAGGCCAATCCCCGGCTTGCCGCATTCTGCCGCTCCGACC
GACTAAGCGCCCGTACGCTTGTTTCATGGGTTGACTTAAACATACGGAGTTCATCCCATGTCTAA
GCATACTGAGTTCATTCCCAATCTAAATCAAATCGGACTGAGGGTTGCAGCAGCAGGACCGACAG
T
Found at i:11612547 original size:158 final size:158
Alignment explanation
Indices: 11612095--11612550 Score: 438
Period size: 159 Copynumber: 2.9 Consensus size: 158
11612085 GCAGTAGGAC
* * * * *
11612095 CAGCAACAAGATCGACAGCACGCAAGGGGGACC-AGGTCGATCCCCAGCTTGTGCATTCTGCCTC
1 CAGCAGCAGGATCGACAGCACGCAGGGGGGACCGA-GTCGATCCCCGGCTTGCGCATTCTGCCTC
* * * * *
11612159 TTC-AGTCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAATTCATTCC
65 TTCGA-CCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCC
* * * *
11612223 ATGTCTAAGCCCCAGCTGAATCGGGGGTTG
129 ATGTCTAAGCACCAGATCAATCGAGGGTTG
* * * * * * *
11612253 -TGACAGCGGGA-CAGATAGCACGCGGAGGGGGATCGAGTCGATCCCCGACTTGCGCATTATGCC
1 CAG-CAGCAGGATC-GACAGCACGCAG-GGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCC
* * * * * * * *
11612316 TCTCCGACCGACTTAGTGCTCGCACGCGCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
63 TCTTCGACCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTC
* *
11612381 ACA-ATCTAAG-ATCAGATCAGATCGAGGGTTG
128 -CATGTCTAAGCACCAGATCA-ATCGAGGGTTG
* * * * *
11612412 CAGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCTCGGCCTGCACATTCTACCTCT
1 CAGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCT
* * * * *
11612477 TCGACCGGCTGAATGCCCGCACACTCATTTCGTGGGTTGGCTTCGGCATACAGCGTTTATTCCAT
66 TCGACCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCAT
11612542 GTCTAAGCA
131 GTCTAAGCA
11612551 TATGGAGTTC
Statistics
Matches: 230, Mismatches: 57, Indels: 21
0.75 0.19 0.07
Matches are distributed among these distances:
157 4 0.02
158 106 0.46
159 114 0.50
160 6 0.03
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.22
Consensus pattern (158 bp):
CAGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCT
TCGACCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCAT
GTCTAAGCACCAGATCAATCGAGGGTTG
Found at i:11612929 original size:26 final size:26
Alignment explanation
Indices: 11612890--11612942 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11612880 GTTGACTTAG
*
11612890 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
*
11612916 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
11612942 G
1 G
11612943 ATCCGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCAGTCTAA
Found at i:11613406 original size:26 final size:26
Alignment explanation
Indices: 11613370--11613422 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11613360 GTTGGCTTAG
11613370 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCAT-TCTAA
11613396 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
11613422 G
1 G
11613423 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:11613908 original size:158 final size:158
Alignment explanation
Indices: 11613472--11614222 Score: 581
Period size: 159 Copynumber: 4.8 Consensus size: 158
11613462 CAGGATCGGT
* * * * * * * * * * *
11613472 AGCACGCAGGGGGGACCGAGTCGATCCCCAGCTTGCGCATTCTGCCTC-TCTAGCTGGATGAGCG
1 AGCACGCAGAGGGGATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTTCGA-CCGGCTCAGCG
* * * *
11613536 CCCGCAT-GCCCGTTTCATGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAAC
65 CCCGC-TCGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCGAC
**
11613600 CGGACCGAGGGTTGTGGCAGTGGGACCGAC
129 CGGACCGAGGGTTGTGGCAGCAGGACCGAC
* * * ** * ** *
11613630 AGCACACAGAGGGTGACCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCGATTGGCTCAGTG
1 AGCACGCAGAGGG-GATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTTCGACCGGCTCAGCG
* * * * * * * *
11613695 CCTGAAT-GCTCGTTT-AGTAGGTTGACTTAGGCATACGGAGTTCATTCCCA-ATCTAAGATCGG
65 CCCG-CTCGCTCGTTTCA-TGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGACCCG
* * * *
11613757 ATCGGATCGAGGGTTGTGGTAGCAGGATCGAC
127 ACCGGACCGAGGGTTGTGGCAGCAGGACCGAC
* ** * * ** * *
11613789 AGCACGTAGAGGGGATCGGGCC-AGTCTTCGGCTTGCACATTCTGCCTTTTCGGTCGGTTGAGCG
1 AGCACGCAGAGGGGATCGGGCCGA-TCCCCGGCTTGCACATTATGCCTCTTCGACCGGCTCAGCG
* * * *
11613853 CCCGCTCGCCCGTTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGT
65 CCCGCTCGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCGA-C
* * *
11613917 CGGACCGAGGGTTGTGGCAACGGGACCTAC
129 CGGACCGAGGGTTGTGGCAGCAGGACCGAC
** * *
11613947 AGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTTCGGCCGGCTCAGCA
1 AGCACGCAGA-GGGGATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTTCGACCGGCTCAGCG
* * * * ** ** * * *
11614012 CTCGCACGCTCATTTCGTGGGTTAACTTCTGCATACGGAGTTCATTCCCA-GTCTAAGATCAGAC
65 CCCGCTCGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGACCCGAC
* **
11614076 CAGACCGAGGGTTGTGGCAGCAGGATTGAC
129 CGGACCGAGGGTTGTGGCAGCAGGACCGAC
* * * * *
11614106 AGCACGCAGGGGGGA-CAGGGTCGATCCCTGGCTTGCA-A-TCTGCCTC-TCTGACCGGCTAAGC
1 AGCACGCAGAGGGGATC-GGGCCGATCCCCGGCTTGCACATTATGCCTCTTC-GACCGGCTCAGC
* * * *
11614167 ACCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
64 GCCCGCTCGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
11614223 CGCATATCAA
Statistics
Matches: 466, Mismatches: 110, Indels: 36
0.76 0.18 0.06
Matches are distributed among these distances:
155 5 0.01
156 61 0.13
157 9 0.02
158 143 0.31
159 237 0.51
160 11 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
AGCACGCAGAGGGGATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTTCGACCGGCTCAGCGC
CCGCTCGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCGACCG
GACCGAGGGTTGTGGCAGCAGGACCGAC
Found at i:11613983 original size:317 final size:315
Alignment explanation
Indices: 11613462--11614222 Score: 863
Period size: 317 Copynumber: 2.4 Consensus size: 315
11613452 GGACCAGCAT
** * * * * ** *
11613462 CAGGATCGGTAGCACGCAGGGGGGACCGAGTCGATCCCCAGCTTGCGCATTCTGCCTCTCT-AGC
1 CAGGATCGACAGCACGCAGAGGGGACAGGGCCGATCCCTGGCTT--GCAATCTGCCTCTCTGA-C
* * *
11613526 TGGATGAGCGCCCGCAT-GCCCGTTTCATGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCT
63 CGGCTGAGCGCCCGC-TCGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
** * *
11613590 AAGCCCCAACCGGACCGAGGGTTGTGGCAGTGGGACCGACAGCACACAGAGGGTGACCGGGTCGA
127 AAGCCCCAACCGGACCGAGGGTTGTGGCAACGGGACCGACAGCACACAGAGGGGGACCGGGCCGA
** * *
11613655 TCCCCGGCTTGTGCATTATGCCTCTCCGATTGGCTCAGTGC-CT-GAATGCTCGTTTAGTAGGTT
192 TCCCCGGCTTGTGCATTATGCCTCTCCGACCGGCTCA--GCACTCGAACGCTCATTTAGTAGGTT
* * * * * *
11613718 GACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGATCGAGGGTTGTGGTAG
255 AACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGTGGCAG
* * *
11613779 CAGGATCGACAGCACGTAGAGGGGATC-GGGCC-AGT-CTTCGGCTTGCACATTCTGCCT-TTTC
1 CAGGATCGACAGCACGCAGAGGGGA-CAGGGCCGA-TCCCT-GGCTTGCA-A-TCTGCCTCTCT-
** * *
11613840 GGTCGGTTGAGCGCCCGCTCGCCCGTTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGT
60 GACCGGCTGAGCGCCCGCTCGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
** * * *
11613905 CTAAGCCCCAGTCGGACCGAGGGTTGTGGCAACGGGACCTACAGCACGCAGAGGGGGATCGGGCC
125 CTAAGCCCCAACCGGACCGAGGGTTGTGGCAACGGGACCGACAGCACACAGAGGGGGACCGGGCC
* * * * *
11613970 GATCCCCGGCTTGTGCATTATGCCTCTTCGGCCGGCTCAGCACTCGCACGCTCATTTCGTGGGTT
190 GATCCCCGGCTTGTGCATTATGCCTCTCCGACCGGCTCAGCACTCGAACGCTCATTTAGTAGGTT
** *
11614035 AACTTCTGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAG
255 AACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGTGGCAG
* * *
11614096 CAGGATTGACAGCACGCAGGGGGGACAGGGTCGATCCCTGGCTTGCAATCTGCCTCTCTGACCGG
1 CAGGATCGACAGCACGCAGAGGGGACAGGGCCGATCCCTGGCTTGCAATCTGCCTCTCTGACCGG
* * * * * *
11614161 CTAAGCACCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
66 CTGAGCGCCCGCTCGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
11614223 CGCATATCAA
Statistics
Matches: 370, Mismatches: 60, Indels: 30
0.80 0.13 0.07
Matches are distributed among these distances:
315 70 0.19
316 11 0.03
317 285 0.77
318 4 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (315 bp):
CAGGATCGACAGCACGCAGAGGGGACAGGGCCGATCCCTGGCTTGCAATCTGCCTCTCTGACCGG
CTGAGCGCCCGCTCGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
CCCAACCGGACCGAGGGTTGTGGCAACGGGACCGACAGCACACAGAGGGGGACCGGGCCGATCCC
CGGCTTGTGCATTATGCCTCTCCGACCGGCTCAGCACTCGAACGCTCATTTAGTAGGTTAACTTA
GGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGTGGCAG
Found at i:11615664 original size:26 final size:26
Alignment explanation
Indices: 11615628--11615680 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11615618 GTTGACTTAG
*
11615628 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
* *
11615654 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
11615680 G
1 G
11615681 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCACAGTCTAA
Found at i:11616146 original size:159 final size:159
Alignment explanation
Indices: 11615777--11616130 Score: 440
Period size: 159 Copynumber: 2.2 Consensus size: 159
11615767 CAGCCATTTG
* * * * *
11615777 AGCGCCCGCACGCCCATTTCGTTGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGTCTC
1 AGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCC
** * **
11615842 AGTCGGACCAAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAAGGGGATCGGGCCAATCCATTG
66 AACCGGACCAAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAAGGGGACCGGGCCAATCCACAG
*
11615907 CTTGCGCATTAGGCCTCTCCGGCGGGCTG
131 CTTGCGCATTAGGCCTCTCCGGCGGGCTC
* * *
11615936 AGTGCCCGCACGCCCGTTCCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCC
1 AGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCC
** * * * * * *
11616001 AACCGGACTGAGGGTTGTGGCAGCGGGTCTGATAGCATGCA-AAGGAGGACCGGGCCAATCCCCA
66 AACCGGACCAAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAAGG-GGACCGGGCCAATCCACA
* * *
11616065 GCTTGCGTATTATGCCTCTCCGGTGGGCTC
130 GCTTGCGCATTAGGCCTCTCCGGCGGGCTC
* * *
11616095 AGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGC
1 AGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGC
11616131 GTATAGAATT
Statistics
Matches: 163, Mismatches: 31, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
158 4 0.02
159 159 0.98
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22
Consensus pattern (159 bp):
AGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCC
AACCGGACCAAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAAGGGGACCGGGCCAATCCACAG
CTTGCGCATTAGGCCTCTCCGGCGGGCTC
Found at i:11616173 original size:159 final size:159
Alignment explanation
Indices: 11615777--11616198 Score: 364
Period size: 159 Copynumber: 2.7 Consensus size: 159
11615767 CAGCCATTTG
* * * * * * * * * *
11615777 AGCGCCCGCACGCCCATTTCGTTGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGTCTC
1 AGCGCCCGCACGCCCATTCCGTGGGTTGACTTAGGCATAGAGAATTAATTCCATATCTAAGACCC
** * ** * **
11615842 AGTCGGACCAAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAAGGGGATCGGGCCAATCCATTG
66 AACCAGACTGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAAGGGGACCGGGCCAATCCACAG
*
11615907 CTTGCGCATTAGGCCTCTCCGGCGGGCTG
131 CTTGCGCATTAGGCCTCTCCGGCGGGCTC
* * * * * * *
11615936 AGTGCCCGCACGCCCGTTCCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCC
1 AGCGCCCGCACGCCCATTCCGTGGGTTGACTTAGGCATAGAGAATTAATTCCATATCTAAGACCC
* * * * * * *
11616001 AACCGGACTGAGGGTTGTGGCAGCGGGTCTGATAGCATGCA-AAGGAGGACCGGGCCAATCCCCA
66 AACCAGACTGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAAGG-GGACCGGGCCAATCCACA
* * *
11616065 GCTTGCGTATTATGCCTCTCCGGTGGGCTC
130 GCTTGCGCATTAGGCCTCTCCGGCGGGCTC
* * * * * *
11616095 AGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCGTATAGAATTAATTCCCA-ATCTAAGATC
1 AGCGCCCGCACGCCCATTCCGTGGGTTGACTTAGGCATAGAGAATTAATT-CCATATCTAAGACC
** * * * *
11616159 GGACCAGA-TCGAGGGTTGCGGTAGTAGGATCGACAGCACG
65 CAACCAGACT-GAGGGTTGTGGCAGCAGGACCGACAGCACG
11616199 TAAGGGGGCA
Statistics
Matches: 210, Mismatches: 50, Indels: 6
0.79 0.19 0.02
Matches are distributed among these distances:
158 5 0.02
159 202 0.96
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.22
Consensus pattern (159 bp):
AGCGCCCGCACGCCCATTCCGTGGGTTGACTTAGGCATAGAGAATTAATTCCATATCTAAGACCC
AACCAGACTGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAAGGGGACCGGGCCAATCCACAG
CTTGCGCATTAGGCCTCTCCGGCGGGCTC
Found at i:11616317 original size:26 final size:26
Alignment explanation
Indices: 11616288--11616340 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11616278 GTTGGCTTAG
11616288 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11616314 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11616340 G
1 G
11616341 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11616682 original size:26 final size:26
Alignment explanation
Indices: 11616634--11616686 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11616624 GTTGACTTAG
*
11616634 GCATACGGAGTTCCTCCGTAGTCTAA
1 GCATACGGAGTTCCTCCGCAGTCTAA
*
11616660 GCATACGGAGTTCATTCC-CAGTCTAA
1 GCATACGGAGTTC-CTCCGCAGTCTAA
11616686 G
1 G
11616687 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCCTCCGCAGTCTAA
Found at i:11616870 original size:333 final size:341
Alignment explanation
Indices: 11616251--11616880 Score: 859
Period size: 333 Copynumber: 1.9 Consensus size: 341
11616241 CTCCGGCCAT
* * * * *
11616251 CTGAGCGCCCGCATGCTCGTTACGTTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CTGAGCGCCAGCATGCTCGTTACATGGGTTGACTTAGGCATACGGAGTTCACTCCATGTCTAAGC
* *
11616316 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCTAGGGTTGTGATGGCAGGACCAGCAGT
66 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG-TGT-ATGGCAGGA-CAGCAG-
* **
11616381 AAGATCGGTATCACACAGTGGGGGATCGGGCCGATCCTTGGCTTGCGCATTCTGCCTCTCCGATC
127 -AGATCGGTAGCACACAGTGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATC
* * * *
11616446 GGCTGAGCACTCGCACGCTCATTTCGTGTGTTGGCTTAGGCATACAGGGTTCATTTCATGTCTAA
191 GGCTGAGCACTCGCACGCCCATTTCATGTGTTGGCTTAGGCATACAGGGTTCATTCCATGCCTAA
11616511 GCCCAAGCCGGACCGAGGGTTGTGGCAGCAGGATCGGTAGCGGGATTAGCAGCACACAGAAAGGG
256 GCCCAAGCCGGACCGAGGGTTGTGGCAGCAGGATCGGTAGCGGGATTAGCAGCACACAGAAAGGG
11616576 ATCAGGCTGATCCCCGGTCGG
321 ATCAGGCTGATCCCCGGTCGG
* *
11616597 CTGAGCGCCAGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC-CTCCGTAGTCTAAG
1 CTGAGCGCCAGCATGCTCGTTACATGGGTTGACTTAGGCATACGGAGTTCACTCCAT-GTCTAAG
* *
11616661 CATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGA-GG-GT-T-G-AGG-TAGCAG-GA
65 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTGTATGGCAGGACAGCAGAGA
* * *
11616719 TTGGTAGCGCACAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCT
130 TCGGTAGCACACAGTGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCT
* * * *
11616783 GAGCCAC-CGCACGCCCGTTTCATTTGTTGGTTTAGGCATA-GGGAGTTCATTCCATGCCTAAGC
195 GAG-CACTCGCACGCCCATTTCATGTGTTGGCTTAGGCATACAGG-GTTCATTCCATGCCTAAGC
* * *
11616846 CCCAGTCGGACCGAGGGTTGTGGCAGCGGGATCGG
258 CCAAGCCGGACCGAGGGTTGTGGCAGCAGGATCGG
11616881 CAACACGTAG
Statistics
Matches: 253, Mismatches: 28, Indels: 19
0.84 0.09 0.06
Matches are distributed among these distances:
332 2 0.01
333 127 0.50
334 16 0.06
337 5 0.02
339 3 0.01
340 1 0.00
341 1 0.00
343 2 0.01
345 6 0.02
346 90 0.36
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (341 bp):
CTGAGCGCCAGCATGCTCGTTACATGGGTTGACTTAGGCATACGGAGTTCACTCCATGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTGTATGGCAGGACAGCAGAGAT
CGGTAGCACACAGTGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTG
AGCACTCGCACGCCCATTTCATGTGTTGGCTTAGGCATACAGGGTTCATTCCATGCCTAAGCCCA
AGCCGGACCGAGGGTTGTGGCAGCAGGATCGGTAGCGGGATTAGCAGCACACAGAAAGGGATCAG
GCTGATCCCCGGTCGG
Found at i:11617140 original size:158 final size:157
Alignment explanation
Indices: 11616660--11617161 Score: 537
Period size: 158 Copynumber: 3.2 Consensus size: 157
11616650 CGTAGTCTAA
* * * *
11616660 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGAGGTAGCAGGATTGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGAGGCAGCAGGATCGGCA
* ** *
11616725 GCGCACAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGC-CA
66 GCACGTA-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCAC-
* ** *
11616789 CCGCACGCCCGTTTCATTTGTTGGTTTAG
129 CCGCACGCTCGTTTCATGGGTTGATTTAG
* * * ** * *
11616818 GCATAGGGAGTTCATT-CCATGCCTAAG-CCCCAGTCGGACCGAGGGTTGTGGCAGCGGGATCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-TCGGACCGAGGGTTGAGGCAGCAGGATCGG
* * * *
11616881 CAACACGTAGAGAGGGACCGTGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGC
64 CAGCACGTAG-G-GGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGC
** * *
11616946 ACCCGCACGCTCGTTTTGTGGATTGATTTAT
127 ACCCGCACGCTCGTTTCATGGGTTGATTTAG
* * * *
11616977 GCATACGGAGTTCATTCCCAGTCTATGATCGGACCGGACCGAGGGTTGGGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGAGGCAGCAGGATCGGCA
* * * * *
11617042 GCACGTAGGGGGCACCGGGCCGATCCTCTGCTTGCGCATTCTGCCTC-TCCAGCCGACTGAGCAC
66 GCACGTAGGGGG-ACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGA-TCGGCTGAGCAC
* *
11617106 CCGCATGCTCGTTTCATGGGTTGACTTAG
129 CCGCACGCTCGTTTCATGGGTTGATTTAG
*
11617135 GCATACAGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
11617162 CATATGAAGT
Statistics
Matches: 280, Mismatches: 54, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
157 15 0.05
158 135 0.48
159 124 0.44
160 6 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGAGGCAGCAGGATCGGCA
GCACGTAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCACCC
GCACGCTCGTTTCATGGGTTGATTTAG
Found at i:11617165 original size:26 final size:26
Alignment explanation
Indices: 11617135--11617187 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
11617125 GTTGACTTAG
11617135 GCATACAG-AGTTCATT-CCATGTCTAA
1 GCATA-AGAAGTTCATTCCCA-GTCTAA
*
11617161 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATTCCCAGTCTAA
11617187 G
1 G
11617188 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCCAGTCTAA
Found at i:11617538 original size:159 final size:159
Alignment explanation
Indices: 11617292--11617676 Score: 348
Period size: 159 Copynumber: 2.4 Consensus size: 159
11617282 CCTCTTCGCT
* * * * * * ** *
11617292 CGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTA
1 CGGCTAAGCGCCCGCATGCTCATTTCGTGGATTGACTTAGGCATACAGAGTTCATTCCATGTCTA
*** * * * * * * **
11617357 ATCCCCAG-TCAGACCGAGGGTTG-TCGCAGCGGGATTGACAGCACGCAGAGGGGG-ACCAGGCC
66 A-GATCAGACCGGACTGAAGGTTGCT-GCAGCAGGATCGACAGCACGCA-AGGGGGCACCAGGAA
11617419 GATCCCCAGCTTACGCATTATGCCTCTCCAAC
128 GATCCCCAGCTTACGCATTATGCCTCTCCAAC
* *
11617451 CGGCTCAGCGCCCGTACT-CTCATTTCGTGGATTGACTTAGGCATACAGAGTTCATTCCCA-GTC
1 CGGCTAAGCGCCCGCA-TGCTCATTTCGTGGATTGACTTAGGCATACAGAGTTCATT-CCATGTC
* * *
11617514 TAAGATCAGACCGGACTGAAGGTTGCTGTAGCAGGATCGATAGCGCGCAAGGGGGCACCAGGAAG
64 TAAGATCAGACCGGACTGAAGGTTGCTGCAGCAGGATCGACAGCACGCAAGGGGGCACCAGGAAG
* * * * * ****
11617579 GTCTCCGGCTTGCGCATTCTGCCTCTCTGGT
129 ATCCCCAGCTTACGCATTATGCCTCTCCAAC
* * * *
11617610 CGGCTAAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
1 CGGCTAAGCGCCCGCATGCTCATTTCGTGGATTGACTTAGGCATACAGAGTTCATTCCATGTCTA
11617675 AG
66 AG
11617677 CATATGGAGT
Statistics
Matches: 180, Mismatches: 39, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
158 13 0.07
159 163 0.91
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
CGGCTAAGCGCCCGCATGCTCATTTCGTGGATTGACTTAGGCATACAGAGTTCATTCCATGTCTA
AGATCAGACCGGACTGAAGGTTGCTGCAGCAGGATCGACAGCACGCAAGGGGGCACCAGGAAGAT
CCCCAGCTTACGCATTATGCCTCTCCAAC
Found at i:11617679 original size:26 final size:26
Alignment explanation
Indices: 11617650--11617702 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11617640 GTTGGCTTAG
11617650 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
11617676 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11617702 G
1 G
11617703 ATCGTACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11617984 original size:13 final size:13
Alignment explanation
Indices: 11617966--11617990 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11617956 CGCATTATGC
11617966 CTCTCCGGTCGGA
1 CTCTCCGGTCGGA
11617979 CTCTCCGGTCGG
1 CTCTCCGGTCGG
11617991 CTGAAAGCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.40, G:0.32, T:0.24
Consensus pattern (13 bp):
CTCTCCGGTCGGA
Found at i:11619655 original size:26 final size:26
Alignment explanation
Indices: 11619607--11619659 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11619597 GTTGACTTAG
* **
11619607 GCATACGGAGTTTATCCCTAGTCTAA
1 GCATACGGAGTTCATCCAAAGTCTAA
*
11619633 GCATACGGAGTTCATTCAAAGTCTAA
1 GCATACGGAGTTCATCCAAAGTCTAA
11619659 G
1 G
11619660 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCAAAGTCTAA
Found at i:11619862 original size:356 final size:355
Alignment explanation
Indices: 11619210--11619902 Score: 987
Period size: 356 Copynumber: 1.9 Consensus size: 355
11619200 TGCCTCTCTT
* *
11619210 GTCGGCTAAGCGTCCGCATGCTCGTTTTGTGCGTTGACTTAGGCATTCGGAGTTCATCTCCAGTC
1 GTCGGCTAAGCGTCCGCACGCTCGTTTTGTGCGTTGACTTAGGCATACGGAGTTCATCTCCAGTC
* ** * * *
11619275 TAAGCATATGGAGTTCATTCCCATTCTAAGATCAAACCAGACCGAGGGTTGCGGTAGCAGGATCG
66 TAAGCATACGGAGTTCATTCAAAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCA
* * * * * * *
11619340 ATAGCATGTAGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCTGGCTGAGCG
131 ATAGCACGCAGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCAGCCGGCTGAGCA
*
11619405 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAGCT
196 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCAATGTCTAAGCCCCAGCT
* * * ** **
11619470 GGATCGAGGGTTGTGGCAGCGGGACCGGTAGCACGTAGAGGGGGACCGGGCCGATCCCTCG-CTT
261 AGACCGAGGGTTGTGGCAGCGAGACCGACAGCACGTAGAGGGGGACCGAACCGATCCC-CGACTT
*
11619534 GCGCATTATGCCTCTTCGACCGACCTCTCCG
325 ACGCATTATGCCTCTTCGACCGACCTCTCCG
* * *
11619565 GTCGGCTTAGCG-CTCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTTATC-CCTAG
1 GTCGGCTAAGCGTC-CGCACGCTCGTTTTGTGCGTTGACTTAGGCATACGGAGTTCATCTCC-AG
* * *
11619628 TCTAAGCATACGGAGTTCATTCAAAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTATGAT
64 TCTAAGCATACGGAGTTCATTCAAAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGAT
* * *
11619693 CAATATCACGCAGGGGGGACCGGGTTGATCCCCGACTTGCGCATTCTACCTCTCCGGCCGGCTGA
129 CAATAGCACGCA-GGGGGACCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCAGCCGGCTGA
* * *
11619758 GCACCCGCGCGCCCGTTTCATGGGTTGGCTTAGGCTTAGGGAGTTCATTCAATGTCTAAGCCCCA
193 GCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCAATGTCTAAGCCCCA
* *
11619823 GTTAGACCGAGGGTTGTGGCAGCGAGACCGACAGCACGTAGAGGGGGACCGAACTGATCCCCGAC
258 GCTAGACCGAGGGTTGTGGCAGCGAGACCGACAGCACGTAGAGGGGGACCGAACCGATCCCCGAC
11619888 TTACGCATTATGCCT
323 TTACGCATTATGCCT
11619903 TTCTGGCCGG
Statistics
Matches: 296, Mismatches: 38, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
354 3 0.01
355 120 0.41
356 173 0.58
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (355 bp):
GTCGGCTAAGCGTCCGCACGCTCGTTTTGTGCGTTGACTTAGGCATACGGAGTTCATCTCCAGTC
TAAGCATACGGAGTTCATTCAAAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCA
ATAGCACGCAGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCAGCCGGCTGAGCA
CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCAATGTCTAAGCCCCAGCT
AGACCGAGGGTTGTGGCAGCGAGACCGACAGCACGTAGAGGGGGACCGAACCGATCCCCGACTTA
CGCATTATGCCTCTTCGACCGACCTCTCCG
Found at i:11620673 original size:26 final size:26
Alignment explanation
Indices: 11620643--11620693 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
11620633 TGGCTTGGGC
11620643 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAGTCTAAGT
*
11620669 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
11620694 ATCAGAAGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGT
Found at i:11620784 original size:183 final size:182
Alignment explanation
Indices: 11620300--11620851 Score: 501
Period size: 183 Copynumber: 3.0 Consensus size: 182
11620290 GTTAACTTAG
* ** * *
11620300 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GAAACGAGGGTTGTGGTAGCTGGATCTAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGGGACGAGGGTTGCGGTAGCAGGATC-AC
* * * * ** * * * *
11620364 AGCACGCAGGGGGTATCG-GGTCGGTCCCTGGCTTACACATTTAGCCTCTCCGGCCGACTGAGCT
64 AGCACGCAGGGGGGACCGAGCT-GATCCCCAGCTTGCGCATTT-GCCTCTCCGACCGGCTGAG-T
* * * *
11620428 -CCCGTACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAA
126 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCATGTCTAA
* * * * * * * *
11620484 GCATACAGAGCTCATTTCCAATCTAAGATCAGACAGGGCCCGAGGGTTACGGCAGCAAGA-C-CA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGG-ACGAGGGTTGCGGTAGCAGGATCACA
** * * * * * *
11620547 GCA-GCAGGATTGG-CAGCAGGCCGATCCTCAACTTGTGCATTCTACCTCTCCGACCGGCTGAGT
65 GCACGCAGG-GGGGACCG-A-GCTGATCCCCAGCTTGCGCATT-TGCCTCTCCGACCGGCTGAGT
*
11620610 GCCCGCACGCTCGTTTCATGGGTTGGCTTGGGCATACGGAGTTCATCCCCA-GTCTAA
126 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-CCCATGTCTAA
*
11620667 GTATACGGAGTTCATTCCCAGTCTAAGATCAGA-AGGGACTGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGGAC-GAGGGTTGCGGTAGCAGGATC-AC
* * *
11620731 AGCACGCAGGGGGGACCGAGCTGATCCCCAGCTTGCGCATTTGCCTTTCCGACCAGCTGAGCGCC
64 AGCACGCAGGGGGGACCGAGCTGATCCCCAGCTTGCGCATTTGCCTCTCCGACCGGCTGAGTGCC
* * * * * * *
11620796 CGCATGCCCATTTCGTGGGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAA
129 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCATGTCTAA
11620850 GC
1 GC
11620852 CCCAGCCAGA
Statistics
Matches: 287, Mismatches: 65, Indels: 33
0.75 0.17 0.09
Matches are distributed among these distances:
181 7 0.02
182 30 0.10
183 167 0.58
184 53 0.18
185 23 0.08
186 7 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (182 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGGACGAGGGTTGCGGTAGCAGGATCACAG
CACGCAGGGGGGACCGAGCTGATCCCCAGCTTGCGCATTTGCCTCTCCGACCGGCTGAGTGCCCG
CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCATGTCTAA
Found at i:11621034 original size:368 final size:369
Alignment explanation
Indices: 11620593--11621306 Score: 922
Period size: 368 Copynumber: 1.9 Consensus size: 369
11620583 GCATTCTACC
* * ** *
11620593 TCTCCGACCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTGGGCATACGGAGTTCATCC
1 TCTCCGACCGACTGAGGGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATCC
* * * *
11620658 CCAGTCTAAGTATACGGAGTTCATTCCCAGTCTAAGATCAGAA-GGGACTGA-GGGTTGCGGTAG
66 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA-AACGGGAC-CACAGGTTGCGGCAG
* * *
11620721 CAGGATCGACAGCACGCAGGGGGGACCGAG-CTGATCCCCAGCTTGCGCATT-TGCCTTTCCGAC
129 CAGGATCGACAGCACGCAGGGGGGACCGAGCCTG-TCCCCAGCATACGCATTCTGCCTCTCCGAC
* * * *
11620784 C-AGCTGAGCGCCCGCATGCCCATTTCGTGGGTTGGCTT-AGACATAGGGAGTTCATTCCATGTC
193 CGA-CTGAGCACCCGAACGCCCATTTCATGGGTTGGCTTAAG-CATAGGGAGTTCATTCCATGTC
* *
11620847 TAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCAGCAGCATGCAGAGGGGGA-TCGAGCC
256 TAAGCCCCAGCCAGACCGAGGGTAGTGGCAGCGGGACCAGCAGCACGCAGAGGGGGACT-GAGCC
* * *
11620911 GATCC-CTGGCTTACGCATTCTGCCTCTTCGGTCGGCCTCTCCGACTGGCT
320 AATCCTC-AGCTTACGCATTCTACCTCTTCGGTCGGCCTCTCCGACTGGCT
* *
11620961 TCTCCGACCGACTGAGGGCCTGCATGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATCC
1 TCTCCGACCGACTGAGGGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATCC
* * * * *
11621026 CTAGTCTAAGCATATGGTGTTCATTCCCAGTCTAAGATCAAACTGGACCACAGGTTGTGGCAGCA
66 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACGGGACCACAGGTTGCGGCAGCA
* * * * * *
11621091 GGATCGACAGTACGTAGGGGGGACCGGGCCTGTCCTCGGCATACGCATTCTGCCTCTCCGGCCGA
131 GGATCGACAGCACGCAGGGGGGACCGAGCCTGTCCCCAGCATACGCATTCTGCCTCTCCGACCGA
* * *
11621156 CTGAGCACTCGAACGCCCGTTTCATGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAATC
196 CTGAGCACCCGAACGCCCATTTCATGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGC
* * * * *
11621221 CCCAGTCGGACTGAGGGTAGTGGCAGTGGGATCAGCAGCACGCAGAGGGGGACTGAGCCAATCCT
261 CCCAGCCAGACCGAGGGTAGTGGCAGCGGGACCAGCAGCACGCAGAGGGGGACTGAGCCAATCCT
*
11621286 CAGCTTGCGCATTCTACCTCT
326 CAGCTTACGCATTCTACCTCT
11621307 CCGGCAAGCT
Statistics
Matches: 295, Mismatches: 43, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
367 3 0.01
368 147 0.50
369 140 0.47
370 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (369 bp):
TCTCCGACCGACTGAGGGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATCC
CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACGGGACCACAGGTTGCGGCAGCA
GGATCGACAGCACGCAGGGGGGACCGAGCCTGTCCCCAGCATACGCATTCTGCCTCTCCGACCGA
CTGAGCACCCGAACGCCCATTTCATGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGC
CCCAGCCAGACCGAGGGTAGTGGCAGCGGGACCAGCAGCACGCAGAGGGGGACTGAGCCAATCCT
CAGCTTACGCATTCTACCTCTTCGGTCGGCCTCTCCGACTGGCT
Found at i:11621039 original size:26 final size:26
Alignment explanation
Indices: 11621009--11621061 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11620999 GTTAACTTAG
11621009 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
* *
11621035 GCATATGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11621061 G
1 G
11621062 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11621388 original size:26 final size:26
Alignment explanation
Indices: 11621352--11621404 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11621342 GTTGGCTTAG
*
11621352 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCAT-TCTAA
11621378 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCATTCTAA
11621404 G
1 G
11621405 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCATTCTAA
Found at i:11622459 original size:159 final size:161
Alignment explanation
Indices: 11622039--11622469 Score: 403
Period size: 159 Copynumber: 2.7 Consensus size: 161
11622029 TGGTCGGTTG
* *
11622039 AGCGTCCGCATGCT-AGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
1 AGCGCCCGCATGCTCA-TTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
** ** * * *
11622103 GGGACTGGATCGAGGGTTGTGGCAGCAGGATCGACAGAACACAG-GGGGGACCAGGGTCGATCCC
65 GAAACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCAGGCTCGATCCC
* * * *
11622167 CGATTTACGCATTCTACCTCTTCGGCCGGCTA
130 CGACTTACGCATTATACCTCTCCGACCGGCTA
* * * * *
11622199 AGCGCCCGCACGC-C-TGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CGATGTCTAAG-
1 AGCGCCCGCATGCTCAT-TTT-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGA
* ** * * * * *
11622260 CCCTAGCCAGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACACAGAGGGGGATCAGGCT-GATC
63 TCGAAACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCAGGCTCGATC
* * *
11622324 CCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCA
128 CCCGACTTACGCATTATACCTCTCCGACCGGCT-A
* * * *
11622359 A-CGGCTGCATGCTCATTTTGTGGGTTGACTTAGGCATATGGAATTCATTCCCAGTCTAAGATCG
1 AGCGCCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
** * * **
11622423 AAACCAGACCGA-GGTTACGACAGCAAGATCGACAGCACGTAGAGGGG
66 AAACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGG
11622470 ACTGGGTCGG
Statistics
Matches: 212, Mismatches: 49, Indels: 21
0.75 0.17 0.07
Matches are distributed among these distances:
158 1 0.00
159 135 0.64
160 75 0.35
161 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.31, T:0.22
Consensus pattern (161 bp):
AGCGCCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
AAACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCAGGCTCGATCCCC
GACTTACGCATTATACCTCTCCGACCGGCTA
Found at i:11623972 original size:26 final size:26
Alignment explanation
Indices: 11623942--11623994 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11623932 GTTGACTTAG
11623942 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* * *
11623968 GCATACAGAGTTCATTCCCTGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
11623994 G
1 G
11623995 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:11624352 original size:158 final size:158
Alignment explanation
Indices: 11623968--11624468 Score: 477
Period size: 158 Copynumber: 3.2 Consensus size: 158
11623958 CCCAGTCTAA
* * * * *
11623968 GCATACAGAGTTCATTCCCT-GTCTAAGATCAGACCGGATCATGGGTTGCGGTAGTAGGATCGAC
1 GCATACAGAGTTCATT-CCTAGTCTAAGATCATACCGGACCAAGGGTTGCAGTAGCAGGATCGAC
* * * *
11624032 AGCA--TGGAGGGGCGATCGGGTCGATCCCCGGATTGCGCATTCTGCCTCTCCGACCGACTGAGC
65 AGCACGTGGAGGGG-GATCGAGTCGGTCCCCGGCTTGCGCATTATGCCTCTCCGA-CGACTGAGC
*
11624095 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * ** * * *
11624126 GCATAGGGAGTTCATT-CGATGTCTAAGCGCCAGT--CGGACCTAGGGTTGTCA-TAGCTGGACC
1 GCATACAGAGTTCATTCCTA-GTCTAAG-ATCA-TACCGGACCAAGGGTTG-CAGTAGCAGGATC
* * * * * *
11624187 GACAGCACGGGGAGGGGGATCGAGCCGGTCCCCGGCTTGTGCATTATGCCTCTCCGTCGGCTCAG
62 GACAGCACGTGGAGGGGGATCGAGTCGGTCCCCGGCTTGCGCATTATGCCTCTCCGACGACTGAG
* *
11624252 CGCCCGCACGCTCGTTTCGTGGGTTGACATAG
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
11624284 GCATACAGAGTTCATTCCTAGCCTAAGATCATACCGGACCAAGGGTTGCAGCAGCAGGATCGATA
1 GCATACAGAGTTCATTCCTAGTCTAAGATCATACCGGACCAAGGGTTGCAGTAGCAGGATCGACA
* * *
11624349 GCACGTAG-GGGGGA-CCAGGTCGGTCCCAGGCTTGCGCATTCTATG--TCTCCGACTGACTGAG
66 GCACGTGGAGGGGGATCGA-GTCGGTCCCCGGCTTGCGCA-T-TATGCCTCTCCGAC-GACTGAG
* * *
11624410 TGCCTGCACGCTCGTTTCATGGGTTGGCTTAG
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
**
11624442 GCATATGGAGTTCATTCC-ATGTCTAAG
1 GCATACAGAGTTCATTCCTA-GTCTAAG
11624469 CATACGGAGT
Statistics
Matches: 273, Mismatches: 54, Indels: 32
0.76 0.15 0.09
Matches are distributed among these distances:
156 4 0.01
157 35 0.13
158 185 0.68
159 42 0.15
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCTAGTCTAAGATCATACCGGACCAAGGGTTGCAGTAGCAGGATCGACA
GCACGTGGAGGGGGATCGAGTCGGTCCCCGGCTTGCGCATTATGCCTCTCCGACGACTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:11624472 original size:26 final size:26
Alignment explanation
Indices: 11624442--11624494 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11624432 GTTGGCTTAG
*
11624442 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11624468 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11624494 G
1 G
11624495 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11625650 original size:184 final size:185
Alignment explanation
Indices: 11625311--11626059 Score: 764
Period size: 184 Copynumber: 4.0 Consensus size: 185
11625301 GTTGACTTAG
* * *
11625311 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGC-ACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAACAGGATCGACA
* * * * * ** *
11625375 GCACGCAAAGGGGGATCGGGCTGGT-CCCTGACTTACGCATTCTACCTCTCCGATAGGTTGAGCG
66 GCACGC-AGGGGGGACCAGGCTGATCCCCAGACTTACGCATTCTACCTCTCCGGCAGGCTGAGCG
* * *
11625439 CCCGCACGCTCGTTTCGTGGTTTGGCTTAGGCATACGGAGTTCATTCGATGTCTAA
130 CCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * ** * *
11625495 GCATATGGTGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGTAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAACAGGATCGACA
* * *
11625560 GCACGCAGGGGGGATCAGGCTGATCCCCAG-CTTACGCATTCTGCCTCTCCGGTAGGCTGAGCGC
66 GCACGCAGGGGGGACCAGGCTGATCCCCAGACTTACGCATTCTACCTCTCCGGCAGGCTGAGCGC
* * *
11625624 CCACACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCGATGTCTAA
131 CCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * ** * ** **
11625679 GCATATGGGGTTCATTCCCA-TCCTAAGATTGGATCGAACCGAGGGTTGCGGCAGTAGGATCGGT
1 GCATACGGAGTTCATTCCCAGT-CTAAGATCAGATCGGACCGAGGGTTGCGGCAACAGGATCGAC
* * * * *
11625743 AGCACGCA-GGGGGACCAGGCCGATCCTC-GGCTTACGCATTCTACCTC-CCTGGCCGGCTAAGC
65 AGCACGCAGGGGGGACCAGGCTGATCCCCAGACTTACGCATTCTACCTCTCC-GGCAGGCTGAGC
*
11625805 ACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
129 GCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
11625862 GCATACGAAGTTCATTCCCAGTCTAAAATCAGATCGGACCGAAGGTTGTGGCAATAGGACTAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCG-AGG--GTTGC----GG-C-A--A
* * * * * * * *
11625927 GCAGGATCGACCGCACACAGGGGGGACCGGGCTGA-CCCCCGACTTGCGTATTTTGCCTCTCCGA
55 -CAGGATCGACAGCACGCAGGGGGGACCAGGCTGATCCCCAGACTTACGCATTCTACCTCTCCG-
* * *
11625991 CCA-GATGA-CTGCCCCGCACGCT-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
118 GCAGGCTGAGC-G-CCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
11626053 TCTAA
181 TCTAA
11626058 GC
1 GC
11626060 CCCAGCCGGA
Statistics
Matches: 474, Mismatches: 67, Indels: 36
0.82 0.12 0.06
Matches are distributed among these distances:
182 3 0.01
183 128 0.27
184 207 0.44
185 21 0.04
186 4 0.01
190 2 0.00
191 1 0.00
192 1 0.00
195 17 0.04
196 78 0.16
197 12 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAACAGGATCGACA
GCACGCAGGGGGGACCAGGCTGATCCCCAGACTTACGCATTCTACCTCTCCGGCAGGCTGAGCGC
CCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:11625873 original size:26 final size:26
Alignment explanation
Indices: 11625836--11625887 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11625826 GTTGGCTTAG
*
11625836 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
11625862 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11625888 AATCAGATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11625877 original size:183 final size:182
Alignment explanation
Indices: 11625311--11625914 Score: 773
Period size: 184 Copynumber: 3.3 Consensus size: 182
11625301 GTTGACTTAG
** *
11625311 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGC-ACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGCAGGATCGATA
* * * * *
11625375 GCACGCAAAGGGGGATCGGGCTGGTCCCTGACTTACGCATTCTACCTCTCCGATAGGTTGAGCGC
66 GCACGC--AGGGGGATCAGGCTGATCCC-GGCTTACGCATTCTACCTCTCCGGTAGGCTGAGCGC
* *
11625440 CCGCACGCTCGTTTCGTGGTTTGGCTTAGGCATACGGAGTTCATTCGATGTCTAA
128 CCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCGATGTCTAA
* * * * * *
11625495 GCATATGGTGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGTAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGCAGGATCGATA
* *
11625560 GCACGCAGGGGGGATCAGGCTGATCCCCAGCTTACGCATTCTGCCTCTCCGGTAGGCTGAGCGCC
66 GCACGCA-GGGGGATCAGGCTGAT-CCCGGCTTACGCATTCTACCTCTCCGGTAGGCTGAGCGCC
* *
11625625 CACACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCGATGTCTAA
129 CACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCGATGTCTAA
* * * * *
11625679 GCATATGGGGTTCATTCCCA-TCCTAAGATTGGATCGAACCGAGGGTTGCGGCAGTAGGATCGGT
1 GCATACGGAGTTCATTCCCAGT-CTAAGATTGGATCGGACCGAGGGTTGCGGCAGCAGGATCGAT
* * ** * *
11625743 AGCACGCAGGGGGACCAGGCCGATCCTCGGCTTACGCATTCTACCTC-CCTGGCCGGCTAAGCAC
65 AGCACGCAGGGGGATCAGGCTGATCC-CGGCTTACGCATTCTACCTCTCC-GGTAGGCTGAGCGC
*
11625807 CCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
128 CCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCGATGTCTAA
* * ** * *
11625862 GCATACGAAGTTCATTCCCAGTCTAAAATCAGATCGGACCGAAGGTTGTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCA
11625915 ATAGGACTAG
Statistics
Matches: 365, Mismatches: 48, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
182 4 0.01
183 138 0.38
184 203 0.56
185 20 0.05
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (182 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGCAGGATCGATA
GCACGCAGGGGGATCAGGCTGATCCCGGCTTACGCATTCTACCTCTCCGGTAGGCTGAGCGCCCA
CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCGATGTCTAA
Found at i:11626253 original size:26 final size:26
Alignment explanation
Indices: 11626216--11626268 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11626206 GTTGACTTAG
*
11626216 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
11626242 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
11626268 G
1 G
11626269 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:11626976 original size:26 final size:26
Alignment explanation
Indices: 11626923--11626976 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
11626913 TGGGTTGACT
* *
11626923 TAGGCATACGGAGTTCATCCTCAGTC
1 TAGGCATACGGACTTCATCCTCAATC
11626949 TAGGCATACGGACTTCATTCC-CAATC
1 TAGGCATACGGACTTCA-TCCTCAATC
11626975 TA
1 TA
11626977 AGATCGAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGACTTCATCCTCAATC
Found at i:11627993 original size:26 final size:26
Alignment explanation
Indices: 11627963--11628015 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11627953 GTTAACTTAG
11627963 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
11627989 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11628015 G
1 G
11628016 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11628342 original size:26 final size:26
Alignment explanation
Indices: 11628306--11628358 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11628296 GTTGACTTAG
11628306 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
11628332 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11628358 G
1 G
11628359 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11628537 original size:343 final size:343
Alignment explanation
Indices: 11627911--11628675 Score: 1023
Period size: 343 Copynumber: 2.2 Consensus size: 343
11627901 TTACGCATCC
** * ** * *
11627911 TGCCTCTCTGGTCGGCTGAGCATCCGCACGCTCGTTTCATGAGTTAACTTAGGCATACAGAGTTC
1 TGCCTCTCTGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACAGAGTTC
*
11627976 ATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAATCAAGGGTTGCGGC
66 ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAATCAAGGGTTGCGGC
* * * *
11628041 AGCAGGATCGGTAGCACTCAGGGGGGACCGGGTCGATCCCTGACTTGTGCATTTTGCCTCTCCGA
131 AGCAGGATCGGCAGCACTCAGGGGGGACCAGGTCGATCCCTGACTTGCGCATTTTACCTCTCCGA
* * **
11628106 CCGGCTTAGTGCCCGCACGCCCGTTCCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
196 CAGGCTGAGCACCCGCACGCCCGTTCCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* *
11628171 AAGCCCCAGCCGGATCGAGGGTTGTGGAAGCGGGACCGGCAGCA-CGTAGAGGGGGACCGGACCG
261 AAGCCCCAGCCGGACCGAGGGTTGTGGAAGCGGGACCGACAGCATC-TAGAGGGGGACCGGACCG
11628235 ATCCTCGACTTGCGCATTA
325 ATCCTCGACTTGCGCATTA
** * *
11628254 TGCCTCTCTGACCGGCTCATTGCCCGCACGCTCGTTTCGTGCGTTGACTTAGGCATACGGAGTTC
1 TGCCTCTCTGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACAGAGTTC
* * *
11628319 ATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATC-AGACCGGATCGAGGGTTGCGG
66 ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGAATCAAGGGTTGCGG
* * *
11628383 CAGCAGGATCGGCAGTACTCAGGGGGGACCAGGTCGAT-CCTCGGCTTGCGCATTTTACCTCTCT
130 CAGCAGGATCGGCAGCACTCAGGGGGGACCAGGTCGATCCCT-GACTTGCGCATTTTACCTCTCC
** * * * *
11628447 GGTATGCTGGGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
194 GACAGGCTGAGCACCCGCACGCCCGTTCCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
* * **
11628512 CTAAGCCCTAGCCGGACCGAGGGTTGTGGTAGCGGGACCGACAGCATCTAGAGGGGGACCGGGTC
259 CTAAGCCCCAGCCGGACCGAGGGTTGTGGAAGCGGGACCGACAGCATCTAGAGGGGGACCGGACC
*
11628577 GATCCTCGACTTGCGCATTC
324 GATCCTCGACTTGCGCATTA
* ** * * * * * * * *
11628597 TGCCTCTTTGTTCGGTTGAGCGCCCGCATGCTCATTTTGTGGGTTGGCTTAGGCATACAGAATTC
1 TGCCTCTCTGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACAGAGTTC
*
11628662 ATTCCCAGTCTAAG
66 ATCCCCAGTCTAAG
11628676 ATTTTGAGCC
Statistics
Matches: 365, Mismatches: 54, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
342 4 0.01
343 360 0.99
344 1 0.00
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (343 bp):
TGCCTCTCTGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACAGAGTTC
ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAATCAAGGGTTGCGGC
AGCAGGATCGGCAGCACTCAGGGGGGACCAGGTCGATCCCTGACTTGCGCATTTTACCTCTCCGA
CAGGCTGAGCACCCGCACGCCCGTTCCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
AAGCCCCAGCCGGACCGAGGGTTGTGGAAGCGGGACCGACAGCATCTAGAGGGGGACCGGACCGA
TCCTCGACTTGCGCATTA
Found at i:11628623 original size:159 final size:158
Alignment explanation
Indices: 11628332--11628676 Score: 374
Period size: 159 Copynumber: 2.2 Consensus size: 158
11628322 CCCAGTCTAA
* * * *
11628332 GCATACGGAGTTCATTCC-TAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGC
1 GCATACGGAGTTCATTCCAT-GTCTAAGACCAGACCGGACCGAGGGTTGCGGCAGCAGGACCGAC
* * * * *
11628396 AGTACTCAGGGGGGACCAGGTCGATCCTCGGCTTGCGCATTTTACCTCTCTGGTATGCTGGGCAC
65 AGCACTCAGGGGGGACCAGGTCGATCCTCGACTTGCGCATTCTACCTCTCTGGTAGGCTGAGCAC
*
11628461 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCCCATTTCGTGGGTTGGCTTAG
* * * * *
11628490 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCGGACCGAGGGTTGTGGTAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGACC-AGACCGGACCGAGGGTTGCGGCAGCAGGACCGAC
* * * * * *
11628554 AGCA-TCTAGAGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTTTGTTCGGTTGAGC
65 AGCACTC-AG-GGGGGACCAGGTCGATCCTCGACTTGCGCATTCTACCTCTCTGGTAGGCTGAGC
* * * *
11628618 GCCCGCATGCTCATTTTGTGGGTTGGCTTAG
128 ACCCGCACGCCCATTTCGTGGGTTGGCTTAG
* *
11628649 GCATACAGAATTCATTCCCA-GTCTAAGA
1 GCATACGGAGTTCATT-CCATGTCTAAGA
11628677 TTTTGAGCCA
Statistics
Matches: 153, Mismatches: 29, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
157 2 0.01
158 55 0.36
159 93 0.61
160 3 0.02
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACCGGACCGAGGGTTGCGGCAGCAGGACCGACA
GCACTCAGGGGGGACCAGGTCGATCCTCGACTTGCGCATTCTACCTCTCTGGTAGGCTGAGCACC
CGCACGCCCATTTCGTGGGTTGGCTTAG
Found at i:11629809 original size:26 final size:26
Alignment explanation
Indices: 11629779--11629831 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11629769 GTTGGCTTAG
11629779 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11629805 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11629831 G
1 G
11629832 ATTGGACGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11629959 original size:183 final size:188
Alignment explanation
Indices: 11629741--11630184 Score: 540
Period size: 183 Copynumber: 2.4 Consensus size: 188
11629731 TTTCCGATTG
* *
11629741 GCTAAGCGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 GCTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * * *
11629806 CATACGGAGTTCATTCCCAGTCTAAGAT-TGGACGGACCGAGGGTTGCGGCAGTAGGACCAGTAG
66 CATACAGAGTTCATTCCCAGTCTAAGATCAGAACGGACCGAGGGTTGCGGCAGCAGGACCAGTAA
* * *
11629870 CAAGATCGACAGCACGTA-GGGGGATC-AG-G-CTTG-CGCATTCTGCCTCTCTGGCC
131 CAAGATCGACAGCACGCAGGGGGGATCGAGCGACTTGTCGCATTCTGCCTCTCCGGCA
* * * *
11629923 GACTAAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
1 G-CTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * *
11629988 GCATGCAGAGTTCATTCTCAGTCTAAGATCAGAATGGACCGAGGGTTGCGGTAGCAGGACCAGTA
65 GCATACAGAGTTCATTCCCAGTCTAAGATCAGAACGGACCGAGGGTTGCGGCAGCAGGACCAGTA
* ** * *
11630053 ACAGGATCGGTAGCACGCAGGGGGGATCGGGCCGATCCTTGACTTTCGCATTCTGCCTCTCCGTC
130 ACAAGATCGACAGCACGCAGGGGGGATCGAG-CGA--CTTG----TCGCATTCTGCCTCTCCGGC
11630118 A
188 A
* * *
11630119 GTTGAGCGCTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 GCTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
11630184 C
66 C
11630185 CTCAGTCAGA
Statistics
Matches: 218, Mismatches: 30, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
182 1 0.00
183 83 0.38
184 44 0.20
185 8 0.04
186 1 0.00
188 1 0.00
191 4 0.02
195 58 0.27
196 18 0.08
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (188 bp):
GCTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CATACAGAGTTCATTCCCAGTCTAAGATCAGAACGGACCGAGGGTTGCGGCAGCAGGACCAGTAA
CAAGATCGACAGCACGCAGGGGGGATCGAGCGACTTGTCGCATTCTGCCTCTCCGGCA
Found at i:11630345 original size:26 final size:26
Alignment explanation
Indices: 11630315--11630367 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11630305 GTTGACTTAG
*
11630315 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
11630341 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11630367 G
1 G
11630368 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11631431 original size:26 final size:26
Alignment explanation
Indices: 11631395--11631447 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11631385 GTTGGCTTAG
*
11631395 GCATACGGAGTTCAAT-CCATGTCTAA
1 GCATACAGAGTTCAATCCCA-GTCTAA
*
11631421 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
11631447 G
1 G
11631448 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:11631959 original size:26 final size:26
Alignment explanation
Indices: 11631923--11631973 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11631913 TGGCTTAGGA
*
11631923 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
11631949 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
11631974 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:11632679 original size:26 final size:26
Alignment explanation
Indices: 11632643--11632695 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11632633 GTTGACTTAG
11632643 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
11632669 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11632695 G
1 G
11632696 ATCACACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11633020 original size:26 final size:26
Alignment explanation
Indices: 11632984--11633036 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11632974 GTTGACTTAG
11632984 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
11633010 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11633036 G
1 G
11633037 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11633405 original size:159 final size:159
Alignment explanation
Indices: 11633010--11633429 Score: 384
Period size: 159 Copynumber: 2.7 Consensus size: 159
11633000 CCCAGTCTAA
* * * *
11633010 GCATATGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGGCA
* * * * * * *
11633075 GCACGCAGGGGGG-ACCGGGCCAATCCCTGGCTTGCGCATTCTGCCTATCTGACCGGCTGAGCGC
66 GCACGAAGGGGGGAATCGGGTCGATCCCTGGCTTGCGCATTATACCTATCTGACCGGCTCAGCGC
* * * *
11633139 CCGCACACCCGTTTCGTGGGTTGGCTTAG
131 CCGCACACCCATTTAGTGGGTTGACTGAG
* * ** * ** * * *
11633168 GCATAGGGAGTTCATT-CCACTTCTAAGCCCCAG-CGGGACCGAGGGTTGTGGCAACGGGACCGG
1 GCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGG
* * * * *
11633231 CAGCATGCAA-AGGGGAATCGGGTCGATCCCTGGCTTGCGCATTATAACT-TTTCGACCTGCTCA
64 CAGCACG-AAGGGGGGAATCGGGTCGATCCCTGGCTTGCGCATTATACCTATCT-GACCGGCTCA
* * *
11633294 GCGCCCGTACGCTCATTTAGTGGGTTGACTGAG
127 GCGCCCGCACACCCATTTAGTGGGTTGACTGAG
* * * * *
11633327 GCATACGGAGTTCATTCCCAATCTTAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATTGACG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGGCA
* * * *
11633392 GCACGAAGGGGGGACT-GGGTCGGTCCCCGACTTGCGCA
66 GCACGAAGGGGGGAATCGGGTCGATCCCTGGCTTGCGCA
11633430 ATCTGTCTCT
Statistics
Matches: 202, Mismatches: 52, Indels: 16
0.75 0.19 0.06
Matches are distributed among these distances:
157 3 0.01
158 79 0.39
159 117 0.58
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.32, T:0.20
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGGCA
GCACGAAGGGGGGAATCGGGTCGATCCCTGGCTTGCGCATTATACCTATCTGACCGGCTCAGCGC
CCGCACACCCATTTAGTGGGTTGACTGAG
Found at i:11633535 original size:26 final size:26
Alignment explanation
Indices: 11633485--11633537 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11633475 GTTGGCTTAG
*
11633485 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
11633511 GCATACGGAGTTCATTTCCA-ATCTAA
1 GCATACGGAGTTCA-TTCCATATCTAA
11633537 G
1 G
11633538 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:11633895 original size:26 final size:26
Alignment explanation
Indices: 11633865--11633917 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11633855 GTTGACCAAG
*
11633865 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
11633891 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11633917 G
1 G
11633918 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11634219 original size:159 final size:160
Alignment explanation
Indices: 11633891--11634394 Score: 393
Period size: 159 Copynumber: 3.2 Consensus size: 160
11633881 CCCAGTTTAA
* * * * * * * * *
11633891 GCATATGGAGTTCATTCCCA-GTCTAAG-ATCGGATCGGACCGAGGGTTGCAGCAACAAGTTCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGATGCAGCAGCAGGATCGA
* * * * * * * * * *
11633954 CAGCACGCA-GG-GGTACCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTTCGTTCG-GCTGAG
65 CAGCACGCAGGGCGGGATCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGATC-GAG
* * * *
11634016 CACCCGTACGC-CTGTTTCATGGGTTGGCTTAG
129 CACCCGCACACTC-ATTTCGTGGGTTGGCTTAG
* * * ** *
11634048 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGCAGCGGGATCGGA
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGATGCAGCAGCAGGATC-GA
* * * * * *
11634112 -TGCACGCAGAGG-GGGATCGGGCCGATCCCCGACTTGTGCATTATGCCTTTTCGATTGACTC-A
65 CAGCACGCAG-GGCGGGATCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGA-TCGA
** * * *
11634174 GTGCCCGCACATTCATTTCGTGGGTTGACTTAT
128 GCACCCGCACACTCATTTCGTGGGTTGGCTTAG
* * * * *
11634207 GCATACGAAGTTCATTCC-TAGTCTAAG-ATCAGATCGGACTGAGGGATGCAGTAGCAGGATCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCGGACCGAGGGATGCAGCAGCAGGATCGA
* * *
11634270 CAGCATGTAGGGCGGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGATCGAGC
65 CAGCACGCAGGGCGGGATCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGATCGAGC
* * * *
11634335 ACCCGTACGCTCGTTTTGTGGGTTGGCTTAG
130 ACCCGCACACTCATTTCGTGGGTTGGCTTAG
11634366 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
11634395 TACGGAGTTC
Statistics
Matches: 269, Mismatches: 63, Indels: 27
0.75 0.18 0.08
Matches are distributed among these distances:
156 3 0.01
157 51 0.19
158 11 0.04
159 200 0.74
160 3 0.01
161 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGATGCAGCAGCAGGATCGAC
AGCACGCAGGGCGGGATCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGATCGAGCA
CCCGCACACTCATTTCGTGGGTTGGCTTAG
Found at i:11634395 original size:26 final size:26
Alignment explanation
Indices: 11634366--11634418 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11634356 GTTGGCTTAG
11634366 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
11634392 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
11634418 G
1 G
11634419 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:11635119 original size:26 final size:26
Alignment explanation
Indices: 11635089--11635139 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
11635079 GTTGACTTAG
*
11635089 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
11635115 GCATACGAAGTTCATTCCTAGTCTA
1 GCATACGAAGTTCATCCCCAGTCTA
11635140 GGATCGGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:11636117 original size:23 final size:23
Alignment explanation
Indices: 11636087--11636135 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
11636077 TCGACCGGCT
11636087 AGTGGGTTGGCTTAGGCATACAG
1 AGTGGGTTGGCTTAGGCATACAG
11636110 AGTGGGTTGGCTTAGGCATACAG
1 AGTGGGTTGGCTTAGGCATACAG
11636133 AGT
1 AGT
11636136 TCATTCCATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.22, C:0.12, G:0.39, T:0.27
Consensus pattern (23 bp):
AGTGGGTTGGCTTAGGCATACAG
Found at i:11636161 original size:26 final size:26
Alignment explanation
Indices: 11636125--11636177 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11636115 GTTGGCTTAG
11636125 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
11636151 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11636177 G
1 G
11636178 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11637618 original size:26 final size:26
Alignment explanation
Indices: 11637582--11637634 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11637572 ATTGGCTTAG
11637582 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11637608 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11637634 G
1 G
11637635 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11638675 original size:26 final size:26
Alignment explanation
Indices: 11638645--11638697 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11638635 GTTGGCTTAT
11638645 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
11638671 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11638697 G
1 G
11638698 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11639407 original size:26 final size:26
Alignment explanation
Indices: 11639377--11639427 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11639367 GTTGACTTAG
11639377 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
11639403 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
11639428 GGATCGGATC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11639883 original size:158 final size:156
Alignment explanation
Indices: 11639403--11639894 Score: 508
Period size: 158 Copynumber: 3.1 Consensus size: 156
11639393 CCTAGTCTAA
* * ** * *
11639403 GCATACGGAGTTCATTCCCAGTCTAGGATCGGATCGGGCCGAGGGTTGCGACAGCAGGATCGGTA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGACAGCAAGATC-GCA
* * *
11639468 GCACGCAGGCGTGA-CTGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCAC
65 GCACGCAGGGGGGATC-GGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCGC
11639532 CCGCATGC-CTGTTTCATGGGTTGGCTTAG
129 CCGCA--CACTGTTTCATGGGTTGGCTTAG
* * * ** * * *
11639561 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCGAACCGAGGGTTGTGGCAGCGAGATCTG
1 GCATACGAAGTTCATTCCCA-GTCTAAGATCGGA-TCGAACCGAGGGTTGCGACAGCAAGATC-G
* * * * * * *
11639624 CAGCACGCAGAAGGGGATCGGGTCGATCCCCGGCTTGCACATTATGCCTCTCTGATCAGCTCAGT
63 CAGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGC
* ** *
11639689 GCCCGCACATTAGTTTTGTGGGTTGACTTAG
127 GCCCGCACACT-GTTTCATGGGTTGGCTTAG
* * *
11639720 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCGATAGCAAGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGACAGCAAGATCG-CA
* * *
11639785 GCACGTAGGGGGGATCGTGTCGGTCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCC
65 GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCC
* * *
11639850 CACACACTCGTTTCATGGGCTGGTTTAG
130 CGCACACT-GTTTCATGGGTTGGCTTAG
11639878 GCATAC-AGAGTTCATTC
1 GCATACGA-AGTTCATTC
11639895 TATGTCTAAG
Statistics
Matches: 268, Mismatches: 56, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
157 7 0.03
158 138 0.51
159 117 0.44
160 6 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGACAGCAAGATCGCAG
CACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCCC
GCACACTGTTTCATGGGTTGGCTTAG
Found at i:11641053 original size:26 final size:26
Alignment explanation
Indices: 11641017--11641069 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11641007 GTTGACTTAG
11641017 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
11641043 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11641069 G
1 G
11641070 ATCAGGCCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11642110 original size:25 final size:26
Alignment explanation
Indices: 11642082--11642133 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
11642072 GTTGACTTAG
* *
11642082 GCATATGGAGTTTA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11642107 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11642133 G
1 G
11642134 ATTGAACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11643137 original size:26 final size:26
Alignment explanation
Indices: 11643101--11643153 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11643091 GCTGGCTTAG
11643101 GCATACGGAGTTCAATCC-ATGTCTAA
1 GCATACGGAGTTCAATCCTA-GTCTAA
*
11643127 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCAATCCTAGTCTAA
11643153 G
1 G
11643154 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCTAGTCTAA
Found at i:11644038 original size:26 final size:26
Alignment explanation
Indices: 11644008--11644060 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11643998 GTTGGCTTAG
11644008 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
* *
11644034 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11644060 G
1 G
11644061 ATTTGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11646378 original size:26 final size:26
Alignment explanation
Indices: 11646342--11646394 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11646332 GTTGACTTAG
11646342 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
11646368 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11646394 G
1 G
11646395 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11646717 original size:26 final size:26
Alignment explanation
Indices: 11646686--11646738 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11646676 GTTGGCTTAG
*
11646686 GCATACAGAGTTCATT-CCATATCTAA
1 GCATACAGAGATCATTCCCA-ATCTAA
*
11646712 GCATACGGAGATCATTCCCAATCTAA
1 GCATACAGAGATCATTCCCAATCTAA
11646738 G
1 G
11646739 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGATCATTCCCAATCTAA
Found at i:11647972 original size:26 final size:26
Alignment explanation
Indices: 11647936--11647988 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11647926 GTTGACTTAG
11647936 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
11647962 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11647988 G
1 G
11647989 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11649167 original size:158 final size:158
Alignment explanation
Indices: 11648900--11649253 Score: 439
Period size: 158 Copynumber: 2.2 Consensus size: 158
11648890 GCACACAGGA
* * ** * *
11648900 GGGACCGGGTCGATCCCCGGCTTGTAAATTCTTCCTCTTCGACTGGCTGAGTGCCCGCACGCCCA
1 GGGACCAGGCCGATCCCCGGCTTG-CCATTCTGCCTCTTCGACTGGCTGAGCGCCCGCACGCCCA
*
11648965 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAAGGT
65 GTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-GGACCGAAGGT
*
11649029 TATG-GCAACAGGA-CTGACAGCACGCAGAGG
129 TATGAG-AACAGGACCAG-CAGCACGCAGAGG
* * * * *
11649059 GGGCCCGGGCTGATCCCCGTCTTGCGCATTCTGCCTCTTCAGAC-GGCTGAGCGCCCGCGCGCCC
1 GGGACCAGGCCGATCCCCGGCTTGC-CATTCTGCCTCTTC-GACTGGCTGAGCGCCCGCACGCCC
* *
11649123 -GTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCAGCTGGACTGAAGGT
64 AGTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAAGGT
* * *
11649187 TGTGAGAGCGGGACCAGCAGCACGCAGAGG
129 TATGAGAACAGGACCAGCAGCACGCAGAGG
* *
11649217 GGGATCAGGCCGATCCCCGGCTTGCCATTATGCCTCT
1 GGGACCAGGCCGATCCCCGGCTTGCCATTCTGCCTCT
11649254 ACGATCGGCT
Statistics
Matches: 168, Mismatches: 22, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
157 11 0.07
158 100 0.60
159 54 0.32
160 3 0.02
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (158 bp):
GGGACCAGGCCGATCCCCGGCTTGCCATTCTGCCTCTTCGACTGGCTGAGCGCCCGCACGCCCAG
TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAAGGTTA
TGAGAACAGGACCAGCAGCACGCAGAGG
Found at i:11651143 original size:157 final size:158
Alignment explanation
Indices: 11650586--11651256 Score: 614
Period size: 159 Copynumber: 4.2 Consensus size: 158
11650576 CAGTCTTAGA
* * * *
11650586 TCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGGGGGGACT-AGGGCGATCCT
1 TCAG-CCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAGGGGGGACTGA-GTCGATCCC
* * * * * * * *
11650650 TGGCTTGCGCATTCTGTCGCTCCAGCCGGCTAAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTA
64 CGGCTTGCGCATTCT-CCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTA
11650715 GGCAT-AGGAGTTCATTCCATGTCTAAGCCC
128 GGCATAAGGAGTTCATTCCATGTCTAAGCCC
* * * *
11650745 -CAGCCGGACCGAGGGTTGTGGCAAC-GGCACCGATAGCACACAGAGGGGGACTGGGCCGATCCC
1 TCAGCCGGACCGAGGGTTGTGGCAGCAGG-ACCGACAGCACACAG-GGGGGACTGAGTCGATCCC
* * * * * * * *
11650808 CGGCTTGCGCATTATTCCTCTTCGACC-AGCTCAACGCCCGCACGCTTGTTTAGTGGGTTGACTT
64 CGGCTTGCGCATT-CTCCTCTCCGGCCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTT
*
11650872 AGGCATACA-GAGTTCATTCCCA-GTCTAAG--A
127 AGGCATA-AGGAGTTCATT-CCATGTCTAAGCCC
* * * * * * * * * * * *
11650902 TCAGACCAGACTGAGGGTTGCGGTAGCAGGATCAACCGCACGCAGGAGGCA-TCGGGTCGGTCCC
1 TCAG-CCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAGGGGGGACT-GAGTCGATCCC
** * * * *
11650966 CAACTTGTGCATTCTGCTCTCCGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAA
64 CGGCTTGCGCATTCTCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
11651031 GCATAAGGAGTTCATTCCATGTCTAA-CCC
129 GCATAAGGAGTTCATTCCATGTCTAAGCCC
* * *
11651060 TCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACTGAATCGATCCCC
1 TCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAG-GGGGGACTGAGTCGATCCCC
* * * * * *
11651125 GGCTTGCGCATTCTCTCTCTCTGGCTAGA-TGAGCGCTCGCACGCTCATTTTGTGGGATGGCTTA
65 GGCTTGCGCATTCTC-CTCTCCGGC-CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTA
* *
11651189 GGCATACGGAGTTCATTCCAAGTCTAAGCCC
128 GGCATAAGGAGTTCATTCCATGTCTAAGCCC
*
11651220 -CA-CCTGTACCGAGGGTTGTGGCAGCAGGACCGACAGC
1 TCAGCC-GGACCGAGGGTTGTGGCAGCAGGACCGACAGC
11651257 CAGATCGATA
Statistics
Matches: 408, Mismatches: 81, Indels: 46
0.76 0.15 0.09
Matches are distributed among these distances:
156 6 0.01
157 125 0.31
158 127 0.31
159 139 0.34
160 11 0.03
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (158 bp):
TCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAGGGGGGACTGAGTCGATCCCCG
GCTTGCGCATTCTCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
ATAAGGAGTTCATTCCATGTCTAAGCCC
Found at i:11651168 original size:316 final size:316
Alignment explanation
Indices: 11650560--11651248 Score: 832
Period size: 316 Copynumber: 2.2 Consensus size: 316
11650550 TAGTCTAAGA
* * *
11650560 ATACGGAGTTCATTCCCAGTCTTAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAACAGC
* * **** * *
11650625 ACACAGGGGGGACTAGGGCGATCCTTGGCTTGCGCATTCTGTCGCTCCAGCCGGCTAAGCGCCCG
66 ACACAGGAGGCACTAGGGCGATCCCCAACTTGCGCATTCTGTCGCTCCAGCCGACTAAGCACCCG
*
11650690 CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
131 CACGCCCGTTTCATGGGTTGGCTTAAGCATAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
* **
11650755 GAGGGTTGTGGCAACGGCACCGATAGCACACAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCAT
196 GAGGGTTGTGGCAACGGCACCGACAGCACACAGAGGGGGACTGAACCGATCCCCGGCTTGCGCAT
* ** *
11650820 TATTCCTCTTCGACCAGCTCAACGCCCGCACGCTTGTTTAGTGGGTTGACTTAGGC
261 TATTCCTCTTCGACCAGATCAACGCCCGCACGCTCATTTAGTGGGATGACTTAGGC
* * * *
11650876 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCAACCGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAACAGC
* * * * * * *
11650941 ACGCAGGAGGCA-TCGGGTCGGTCCCCAACTTGTGCATTCTG-CTCTCCGGCCGACTGAGCACCC
66 ACACAGGAGGCACTAGGG-CGATCCCCAACTTGCGCATTCTGTCGCTCCAGCCGACTAAGCACCC
* *
11651004 GCACGCTCGTTTCGTGGGTTGGCTTAAGCATAAGGAGTTCATTCCATGTCTAA-CCCTCAGCCGG
130 GCACGCCCGTTTCATGGGTTGGCTTAAGCAT-AGGAGTTCATTCCATGTCTAAGCCC-CAGCCGG
* * * *
11651068 ACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACTGAATCGATCCCCGGCTTGCG
193 ACCGAGGGTTGTGGCAACGGCACCGACAGCACACAGAGGGGGACTGAACCGATCCCCGGCTTGCG
* * * * * * * *
11651133 CATT-CT-CTCTCTCTGGCTAGATGAGCGCTCGCACGCTCATTTTGTGGGATGGCTTAGGC
258 CATTATTCCTCT-TC-GACCAGATCAACGCCCGCACGCTCATTTAGTGGGATGACTTAGGC
* * ** * *
11651192 ATACGGAGTTCATTCCAAGTCTAAG-CCCCACCTGTACCGAGGGTTGTGGCAGCAGGA
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGA
11651249 CCGACAGCCA
Statistics
Matches: 314, Mismatches: 53, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
314 4 0.01
315 60 0.19
316 250 0.80
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (316 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAACAGC
ACACAGGAGGCACTAGGGCGATCCCCAACTTGCGCATTCTGTCGCTCCAGCCGACTAAGCACCCG
CACGCCCGTTTCATGGGTTGGCTTAAGCATAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
GAGGGTTGTGGCAACGGCACCGACAGCACACAGAGGGGGACTGAACCGATCCCCGGCTTGCGCAT
TATTCCTCTTCGACCAGATCAACGCCCGCACGCTCATTTAGTGGGATGACTTAGGC
Found at i:11651200 original size:159 final size:157
Alignment explanation
Indices: 11650560--11651256 Score: 594
Period size: 157 Copynumber: 4.4 Consensus size: 157
11650550 TAGTCTAAGA
* ** * *
11650560 ATACGGAGTTCATTCCCAGTCTTA-GATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
1 ATACGGAGTTCATT-CCAGTCTAACCCTCAG-CCGGACCGAGGGTTGTGGCAGCAGGACCGACAG
* ** * * ** * * *
11650624 CACACAGGGGGGACT-AGGGCGATCCTTGGCTTGCGCATTCTGTCGCTCCAGCCGGCTAAGCGCC
64 CACACAGGGGGGACTGA-GTCGATCCCCGGCTTGCGCATTCTCTCTCTCTGGCCAGATGAGCGCC
* *
11650688 CGCACGCCCGTTTCATGGGTTGGCTTAGGC
128 CGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* *
11650718 ATA-GGAGTTCATTCCATGTCTAAGCCC-CAGCCGGACCGAGGGTTGTGGCAAC-GGCACCGATA
1 ATACGGAGTTCATTCCA-GTCTAA-CCCTCAGCCGGACCGAGGGTTGTGGCAGCAGG-ACCGACA
* * * * * * *
11650780 GCACACAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTAT-TC-CTCTTCGACCAGCTCAAC
63 GCACACAG-GGGGGACTGAGTCGATCCCCGGCTTGCGCATTCTCTCTCTC-T-GGCCAGATGAGC
* * *
11650843 GCCCGCACGCTTGTTTAGTGGGTTGACTTAGGC
125 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* ** * * * * * * *
11650876 ATACAGAGTTCATTCCCAGTCTAA-GATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCAACCG
1 ATACGGAGTTCATT-CCAGTCTAACCCTCAG-CCGGACCGAGGGTTGTGGCAGCAGGACCGACAG
* * * * * ** * *
11650940 CACGCAGGAGGCA-TCGGGTCGGTCCCCAACTTGTGCATTCTGCTCTC-C-GGCC-GACTGAGCA
64 CACACAGGGGGGACT-GAGTCGATCCCCGGCTTGCGCATTCT-CTCTCTCTGGCCAGA-TGAGCG
*
11651001 CCCGCACGCTCGTTTCGTGGGTTGGCTTAAGC
126 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* *
11651033 ATAAGGAGTTCATTCCATGTCTAACCCTCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGC
1 ATACGGAGTTCATTCCA-GTCTAACCCTCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGACAGC
* * * *
11651098 ACGCAGAGGGGGACTGAATCGATCCCCGGCTTGCGCATTCTCTCTCTCTGGCTAGATGAGCGCTC
65 ACACAG-GGGGGACTGAGTCGATCCCCGGCTTGCGCATTCTCTCTCTCTGGCCAGATGAGCGCCC
* * *
11651163 GCACGCTCATTTTGTGGGATGGCTTAGGC
129 GCACGCTCGTTTCGTGGGTTGGCTTAGGC
*
11651192 ATACGGAGTTCATTCCAAGTCTAAGCCC-CA-CCTGTACCGAGGGTTGTGGCAGCAGGACCGACA
1 ATACGGAGTTCATTCC-AGTCTAA-CCCTCAGCC-GGACCGAGGGTTGTGGCAGCAGGACCGACA
11651255 GC
63 GC
11651257 CAGATCGATA
Statistics
Matches: 428, Mismatches: 83, Indels: 55
0.76 0.15 0.10
Matches are distributed among these distances:
156 12 0.03
157 140 0.33
158 130 0.30
159 131 0.31
160 14 0.03
161 1 0.00
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (157 bp):
ATACGGAGTTCATTCCAGTCTAACCCTCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCA
CACAGGGGGGACTGAGTCGATCCCCGGCTTGCGCATTCTCTCTCTCTGGCCAGATGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAGGC
Found at i:11651469 original size:12 final size:12
Alignment explanation
Indices: 11651452--11651479 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
11651442 GGGTTACGAT
11651452 AGCAGGATCGAC
1 AGCAGGATCGAC
11651464 AGCAGGATCGAC
1 AGCAGGATCGAC
11651476 AGCA
1 AGCA
11651480 TACAGGATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.25, G:0.32, T:0.07
Consensus pattern (12 bp):
AGCAGGATCGAC
Found at i:11651955 original size:26 final size:26
Alignment explanation
Indices: 11651918--11651967 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
11651908 TGGCTTAGGC
11651918 ATACGGAATTCATT-CCATGTCTAACG
1 ATACGGAATTCATTCCCA-GTCTAACG
*
11651944 ATACGGAGTTCATTCCCAGTCTAA
1 ATACGGAATTCATTCCCAGTCTAA
11651968 GATTTTGAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (26 bp):
ATACGGAATTCATTCCCAGTCTAACG
Found at i:11653171 original size:26 final size:26
Alignment explanation
Indices: 11653142--11653193 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11653132 TTGGCTTAGT
11653142 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
*
11653168 CATACGGAGTTGATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
11653194 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:11659646 original size:26 final size:26
Alignment explanation
Indices: 11659616--11659665 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
11659606 GTTGACTTAG
11659616 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
11659642 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
11659666 GAGATCAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11660364 original size:26 final size:26
Alignment explanation
Indices: 11660328--11660380 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11660318 GTTGACTTAG
11660328 GCATACGGAGTTC-TTCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
11660354 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11660380 G
1 G
11660381 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11660670 original size:159 final size:157
Alignment explanation
Indices: 11660499--11661164 Score: 495
Period size: 157 Copynumber: 4.2 Consensus size: 157
11660489 GCCTGTTTCA
*
11660499 TGGGTTGGCTTAGGCATACGAAGTTCATTTCATGTCTAAGCCCCAACTGGACTGAGGGTTGTGGC
1 TGGGTTGACTTAGGCATACGAAGTTCATTTCATGTCTAAGCCCCAACTGGACTGAGGGTTGTGGC
* * *
11660564 AGCGGTATCTGTAGCACGCAGAGGGGGACCGGGCCGATCCCGGGTTTGTGCATTACGCCTCTCCA
66 AGCGG-ATCTGTAGCACGTAGAGGGGGACCGGGCCGATCCCCGGTTTGTGCATTACGCCTCTCCG
* *
11660629 GTCGACTCAGCACCCGCACGCTCATTCCT
130 GTCGGCTCAGCGCCCGCACGCTCATT-CT
* * ** ** **
11660658 TGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGACTGGA-T-AGAGGTTACG
1 TGGGTTGACTTAGGCATACGAAGTTCATT-TCATGTCTAAGCCCCAACTGGACTGAG-GGTTGTG
* * * *
11660720 GTAGCAGGATC-GATAGCACGTAG-GGGGTA-CGGGCCGATCCCCGGCTTGCGCATT-CTGCCTC
64 GCAGC-GGATCTG-TAGCACGTAGAGGGGGACCGGGCCGATCCCCGGTTTGTGCATTAC-GCCTC
* * * ** *
11660781 TTCGGTCGGTTGAGCGCCCGTACAC-CTGTTTCA
126 TCCGGTCGGCTCAGCGCCCG--CACGCTCATTCT
* ** *
11660814 TGGGTT-AGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCCAGTTGGACCGAGGGTTGTGG
1 TGGGTTGA-CTTAGGCATACGAAGTTCATTTCATGTCTAAGCCCCAACTGGACTGAGGGTTGTGG
** **
11660878 CAGCGGGATCTACAGCACGTAGAGGGGGACCGAACCGATCCCCGGTTTGTGCATTACGCCTCTCC
65 CAGC-GGATCTGTAGCACGTAGAGGGGGACCGGGCCGATCCCCGGTTTGTGCATTACGCCTCTCC
* * *
11660943 GGTCGGCTCAGTGCCCACACGCTCATTTT
129 GGTCGGCTCAGCGCCCGCACGCTCATTCT
* ** * **
11660972 GTGGGTTAACTTAGGCATAC-AGAGTTCA-TTC-TAGTCTAAGATCGAACCAGA-TAGAGGGTTG
1 -TGGGTTGACTTAGGCATACGA-AGTTCATTTCAT-GTCTAAGCCCCAACTGGACT-GAGGGTTG
* * * * * * *
11661033 CGGTAGCAGGATC-GATAGCACGCAG-GGGGGATCGGGTC-AGTCCCCGGCTTGTGCATT-CTAC
62 TGGCAGC-GGATCTG-TAGCACGTAGAGGGGGACCGGGCCGA-TCCCCGGTTTGTGCATTAC-GC
* * * * ** *
11661094 CTCTCCAGTCGGTTGAGCGCCTGCACGCTTGTTTCA
123 CTCTCCGGTCGGCTCAGCGCCCGCACGC-TCATTCT
* * *
11661130 TGGGTTGGCTTAGGCACAC-AGAGTTCATTCCATGT
1 TGGGTTGACTTAGGCATACGA-AGTTCATTTCATGT
11661165 TTAAACATAT
Statistics
Matches: 393, Mismatches: 87, Indels: 55
0.73 0.16 0.10
Matches are distributed among these distances:
155 4 0.01
156 83 0.21
157 111 0.28
158 83 0.21
159 108 0.27
160 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (157 bp):
TGGGTTGACTTAGGCATACGAAGTTCATTTCATGTCTAAGCCCCAACTGGACTGAGGGTTGTGGC
AGCGGATCTGTAGCACGTAGAGGGGGACCGGGCCGATCCCCGGTTTGTGCATTACGCCTCTCCGG
TCGGCTCAGCGCCCGCACGCTCATTCT
Found at i:11661039 original size:315 final size:317
Alignment explanation
Indices: 11660354--11661164 Score: 1092
Period size: 315 Copynumber: 2.6 Consensus size: 317
11660344 CCTAGTCTAA
** * **
11660354 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATAGAGGGTTGCGGTAGCAGGATCGATA
* * * * * ** *
11660419 ACACGCAGGGGGGACCGGATCGATCCTCGGCTTGCACATTCTACCTCTCCGGTTGACTGAGCACC
66 GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCGCC
*
11660484 CGTACGCCTGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTTCATGTCTAAGCCCCAACTGG
131 CGTACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCCAACTGG
* * ** ** *
11660549 ACTGAGGGTTGTGGCAGCGGTATCTGTAGCACGCAGAGGGGGACCGGGCCGATCCCGGGTTTGTG
196 ACCGAGGGTTGTGGCAGCGGGATCTACAGCACGCAGAGGGGGACCGAACCGATCCCCGGTTTGTG
* *
11660614 CATTACGCCTCTCCAGTCGACTCAGCACCCGCACGCTCATTCCTTGGGTTGACTTAG
261 CATTACGCCTCTCCAGTCGACTCAGCACCCACACGCTCATTCCTTGGGTTAACTTAG
* * *
11660671 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATAGA-GGTTACGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATAGAGGGTTGCGGTAGCAGGATCGATA
* * * * *
11660735 GCACGTAGGGGGTA-CGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGTTGAGCGCC
66 GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCGCC
* * **
11660799 CGTACACCTGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCCAGTTGG
131 CGTACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCCAACTGG
*
11660864 ACCGAGGGTTGTGGCAGCGGGATCTACAGCACGTAGAGGGGGACCGAACCGATCCCCGGTTTGTG
196 ACCGAGGGTTGTGGCAGCGGGATCTACAGCACGCAGAGGGGGACCGAACCGATCCCCGGTTTGTG
* * ** *
11660929 CATTACGCCTCTCCGGTCGGCTCAGTGCCCACACGCTCATT-TTGTGGGTTAACTTAG
261 CATTACGCCTCTCCAGTCGACTCAGCACCCACACGCTCATTCCT-TGGGTTAACTTAG
* * *
11660986 GCATACAGAGTTCATT-CTAGTCTAAGATCGAACCAGATAGAGGGTTGCGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATAGAGGGTTGCGGTAGCAGGATCGATA
* * *
11661050 GCACGCAGGGGGGATCGGGTC-AGTCCCCGGCTTGTGCATTCTACCTCTCCAGTCGGTTGAGCGC
66 GCACGCAGGGGGGACCGGGTCGA-TCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCGC
* * * * * *
11661114 CTGCACGCTTGTTTCATGGGTTGGCTTAGGCACACAGAGTTCATTCCATGT
130 CCGTACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGT
11661165 TTAAACATAT
Statistics
Matches: 428, Mismatches: 62, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
314 22 0.05
315 254 0.59
316 114 0.27
317 38 0.09
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATAGAGGGTTGCGGTAGCAGGATCGATA
GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCGCC
CGTACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCCAACTGG
ACCGAGGGTTGTGGCAGCGGGATCTACAGCACGCAGAGGGGGACCGAACCGATCCCCGGTTTGTG
CATTACGCCTCTCCAGTCGACTCAGCACCCACACGCTCATTCCTTGGGTTAACTTAG
Found at i:11661553 original size:26 final size:26
Alignment explanation
Indices: 11661523--11661575 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11661513 GTTGACTTAG
11661523 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
11661549 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11661575 G
1 G
11661576 ATCGAACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11661918 original size:26 final size:26
Alignment explanation
Indices: 11661866--11661918 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11661856 GTTGACTTCG
*
11661866 GCATACGGAGTTCATCCCCAATTTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
11661892 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
11661918 G
1 G
11661919 ATCGGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:11662098 original size:343 final size:343
Alignment explanation
Indices: 11661472--11662235 Score: 994
Period size: 343 Copynumber: 2.2 Consensus size: 343
11661462 TCTCCGATCG
* * * * * *
11661472 GCCTCTTCGGCCGGCTGAGCGCTCGTACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCA
1 GCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCGTTACATGGGTTGACTTAGGCATACGGAGTTCA
* * * *
11661537 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGATCGAGGGTTACGGCA
66 TCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGAACCGAGGGTTACGACA
* * * * * * *
11661602 GTAGGATCGACAACACGCAGGGGGAGCCGGGTCGATCCCTGGCTTGTGCATTTTGCCTCTCCAAC
131 GCAGGATCGACAACACGAAGGGGGAGCCGAGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCAAC
* *
11661667 CGGCTGAGAGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTA
196 CGGCTGAGAGCCCACACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * * * * * *
11661732 AGCCCTAGTCGGACCGAGGGTTGTGGCAGCGGGACCGGTAGCATGCAGAGGGGGATCGGGTCGAT
261 AGCCCCAGTCGAACCGAGGGTTGTGGCAGCGGGACAGGCAACATGCAGAGGGGGACCGGGCCGAT
* *
11661797 CCTCGGCTTGCGCATTAT
326 CCCCGGCTTACGCATTAT
* * * *
11661815 GCCTCTTCGACCGGCTCAGCGCCCGCACGCTTGTTACGTGGGTTGACTTCGGCATACGGAGTTCA
1 GCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCGTTACATGGGTTGACTTAGGCATACGGAGTTCA
* * * * **
11661880 TCCCCAATTTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGACA
66 TCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGAACCGAGGGTTACGACA
* * * **
11661945 GCAGGATCGATAGCACGAAGGGCGGA-CTGAGCCGATACCC-AGCTTGCGCATTCTGCCTCTCTG
131 GCAGGATCGACAACACGAAGGG-GGAGCCGAGCCGAT-CCCTAGCTTGCGCATTCTGCCTCTCCA
** * ** **
11662008 GTCGGCTGAGTGCCCACACGTCCGTTTTTTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
194 ACCGGCTGAGAGCCCACACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
*
11662073 TAAGCCCCAGTCGAACTGAGGGTTGTGGCAGCGGGACAGGCAACATGCAGAGGGGGACCGGGCCG
259 TAAGCCCCAGTCGAACCGAGGGTTGTGGCAGCGGGACAGGCAACATGCAGAGGGGGACCGGGCCG
11662138 ATCCCCGGCTTACGCATTAT
324 ATCCCCGGCTTACGCATTAT
* *
11662158 GCCTCTTTGGCCGGCTCAGCGCCCGCACGCTCGTTTA-ATGGGTTGACTTATGCATACGGAGTTC
1 GCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCG-TTACATGGGTTGACTTAGGCATACGGAGTTC
*
11662222 ATTCCCAATCTAAG
65 ATCCCCAATCTAAG
11662236 ATCGGACCGA
Statistics
Matches: 359, Mismatches: 59, Indels: 6
0.85 0.14 0.01
Matches are distributed among these distances:
343 350 0.97
344 9 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (343 bp):
GCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCGTTACATGGGTTGACTTAGGCATACGGAGTTCA
TCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGAACCGAGGGTTACGACA
GCAGGATCGACAACACGAAGGGGGAGCCGAGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCAAC
CGGCTGAGAGCCCACACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
AGCCCCAGTCGAACCGAGGGTTGTGGCAGCGGGACAGGCAACATGCAGAGGGGGACCGGGCCGAT
CCCCGGCTTACGCATTAT
Found at i:11662344 original size:158 final size:157
Alignment explanation
Indices: 11661892--11662384 Score: 512
Period size: 158 Copynumber: 3.1 Consensus size: 157
11661882 CCCAATTTAA
* * * *
11661892 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * *
11661957 GCACGA-AGGGCGGACTGAGCCGATACCCAGCTTGCGCATTCTGCCTC-TCTGGTCGGCTGAGTG
66 GCA-TACAGGGGGGACTG-GCCGATCCCCGGCTTACGCATTCTGCCTCTTC-GGCCGGCTGAGCG
* **
11662020 CCCACACG-TCCGTTTTTTGGGTTGGCTTAG
128 CCCGCACGCT-CGTTTAATGGGTTGGCTTAG
* * ** * *
11662050 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCGAACTGAGGGTTGTGGCAGCGGGA-CAG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGAACTGAGGGTTGTGGCAGCAGGATC-G
* * * * * * *
11662112 GCAACATGCAGAGGGGGACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTTGGCCGGCTCAG
63 ACAGCATACAG-GGGGGA-CTGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGGCCGGCTGAG
* *
11662177 CGCCCGCACGCTCGTTTAATGGGTTGACTTAT
126 CGCCCGCACGCTCGTTTAATGGGTTGGCTTAG
* ** *
11662209 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGAACTGAGGGTTACGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGTGGCAGCAGGATCGACA
* *
11662274 GCATACAGGGGGGACTAGGCTGATCCCCGGCTTTCGCATTCTGCCTCTTCGGCCGGCTGAGCGCC
66 GCATACAGGGGGGACT-GGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGGCCGGCTGAGCGCC
** *
11662339 CGCACGCTCGTTTCGTGCGTTGGCTTAG
130 CGCACGCTCGTTTAATGGGTTGGCTTAG
11662367 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
11662385 ATGACTAAGC
Statistics
Matches: 271, Mismatches: 52, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
157 7 0.03
158 140 0.52
159 114 0.42
160 10 0.04
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGTGGCAGCAGGATCGACA
GCATACAGGGGGGACTGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGGCCGGCTGAGCGCCC
GCACGCTCGTTTAATGGGTTGGCTTAG
Found at i:11663389 original size:171 final size:171
Alignment explanation
Indices: 11663093--11663400 Score: 388
Period size: 171 Copynumber: 1.8 Consensus size: 171
11663083 TTAGGCATAT
* * *
11663093 GGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCGAAGATCAGACCAGACCGAGCA
1 GGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTACCAGTAGAAGATCAAACCAGACCGAGCA
* ** * *
11663158 TTACGACAGCAGGATCGATAGCACGCAAGGGGGATCGGGTTGATCCCCGACTTGCGCATTCTGCC
66 TTACGACAGCAGGATCGACAGCACGCAAGGGGGATCGGACTGATCCCCGACTTACGCATTCTACC
11663223 TCTCCGGTCGTCTGAGCGCCCGTACACCTGTTTCATGGGTC
131 TCTCCGGTCGTCTGAGCGCCCGTACACCTGTTTCATGGGTC
* * * * *
11663264 GGAGTTCAT-TCCATGTTTAAGCATACGGAGTTCATTACTAGTATAAGATCAAACCAGACCGAGG
1 GGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTACCAGTAGAAGATCAAACCAGACCGAGC
* * * * * * *
11663328 GTTA-GGCAGCATGATTGGCAGCACGCAGGGGGGGATTGGACTGATCCCC-AGCTTACGCATTCT
65 ATTACGACAGCAGGATCGACAGCACGCA-AGGGGGATCGGACTGATCCCCGA-CTTACGCATTCT
11663391 ACCTCTCCGG
128 ACCTCTCCGG
11663401 CCGACTGAAT
Statistics
Matches: 114, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
170 22 0.19
171 92 0.81
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (171 bp):
GGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTACCAGTAGAAGATCAAACCAGACCGAGCA
TTACGACAGCAGGATCGACAGCACGCAAGGGGGATCGGACTGATCCCCGACTTACGCATTCTACC
TCTCCGGTCGTCTGAGCGCCCGTACACCTGTTTCATGGGTC
Found at i:11663517 original size:12 final size:12
Alignment explanation
Indices: 11663502--11663532 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
11663492 GCAGTAAGAC
11663502 TGGCAGCCGGAT
1 TGGCAGCCGGAT
*
11663514 TGGCAGCGGGAT
1 TGGCAGCCGGAT
11663526 TGGCAGC
1 TGGCAGC
11663533 ATGTAGAGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.23, G:0.45, T:0.16
Consensus pattern (12 bp):
TGGCAGCCGGAT
Found at i:11663664 original size:26 final size:26
Alignment explanation
Indices: 11663635--11663690 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
11663625 TGGGTTGACT
11663635 TAAGCATACGGAGTTCA-TCTCCAGTC
1 TAAGCATACGGAGTTCATTC-CCAGTC
11663661 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
11663687 TAAG
1 TAAG
11663691 ATCGAACTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 27 0.93
27 2 0.07
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:11664009 original size:26 final size:26
Alignment explanation
Indices: 11663980--11664032 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11663970 GTTGACTTAG
11663980 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
11664006 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11664032 G
1 G
11664033 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11664210 original size:343 final size:342
Alignment explanation
Indices: 11663613--11664349 Score: 890
Period size: 343 Copynumber: 2.2 Consensus size: 342
11663603 GAGTGCCCGT
*
11663613 ACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATCTCCAGTCTAAGCATACGGAGTTCA
1 ACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
* * * * **
11663678 TTCCCAGTCTAAGATCGAACTGGATCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGT
66 TTCCCAGTCTAAGATCGAACCGGATCGAAGGTTACGACAGCAAGATCGACAGCACGCAGGGGGAC
* * * **
11663743 CGAGCCGATCCCTGGCTTGTGCATTTTGCCTCTCCGGCCGACTGAGCACCCGCACGTCTGTTTCG
131 CGAGCCGATCCCTAGCTTATGCATTTTGCCTCTCCGGCCGACTGAGCACCCGCACGCCCATTTCG
*
11663808 TGGGTTGGCTTAGGCATAGGGAGGTTATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGC
196 TGGGTTGGCTTAGGCATAGGGAGGTTATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGC
* * * * *
11663873 AGCGGGATC-GACAGCATGTAGAGGGGGACCGGGTCGAT-CCTCGGCTTACTCATTATGCCTCTT
261 AGCGAGA-CAGACAGCACGCAGAGGGGGACCGGGCCGATCCCT-GGCTTACGCATTATGCCTCTT
**
11663936 CGACCGGCTCAACGCCTGC
324 CGACCGGCTCAACGCCCAC
* * *
11663955 ACGCTTGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
1 ACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
* ** * * * *
11664020 TTCCCAGTCTAAGATCGGACCGGA-CTGAAGGTTGTGACAGCAAGATTGATAGCATGGAGGGTGG
66 TTCCCAGTCTAAGATCGAACCGGATC-GAAGGTTACGACAGCAAGATCGACAGCACGCAGGG-GG
* * ** * *
11664084 ACCGAGCCGAT-CCTCAGCTTATGCATTTTGCCTCTCTGGTCGGTTGAGCGCCTGCACGCCCATT
129 ACCGAGCCGATCCCT-AGCTTATGCATTTTGCCTCTCCGGCCGACTGAGCACCCGCACGCCCATT
** * * *
11664148 TTTTGGGTTGGCTTAGGGATAGGGA-GTTCATTCCATGTCTAAGGCCCAGCCGGACTGAGGGTTG
193 TCGTGGGTTGGCTTAGGCATAGGGAGGTT-ATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTG
* ** * *
11664212 TGGTAGCGAGACAGGTAGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTC
257 TGGCAGCGAGACAGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTACGCATTATGCCTC
*
11664277 TTCGGCCGGCTCAACGCCCAC
322 TTCGACCGGCTCAACGCCCAC
** * * ** * *
11664298 ACGCTCGTTTTATGAGTTGACTTATGCATACAAAGTTCATTCCTAGTCTAAG
1 ACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAG
11664350 ATCAGACCAA
Statistics
Matches: 332, Mismatches: 57, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
341 1 0.00
342 116 0.35
343 212 0.64
344 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (342 bp):
ACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATCGAACCGGATCGAAGGTTACGACAGCAAGATCGACAGCACGCAGGGGGAC
CGAGCCGATCCCTAGCTTATGCATTTTGCCTCTCCGGCCGACTGAGCACCCGCACGCCCATTTCG
TGGGTTGGCTTAGGCATAGGGAGGTTATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGC
AGCGAGACAGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTACGCATTATGCCTCTTCG
ACCGGCTCAACGCCCAC
Found at i:11665409 original size:26 final size:26
Alignment explanation
Indices: 11665373--11665425 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11665363 GTAGACTTAG
*
11665373 GCATACGGAGTTCATCCCCGGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
11665399 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11665425 G
1 G
11665426 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11666058 original size:158 final size:158
Alignment explanation
Indices: 11665399--11666227 Score: 628
Period size: 158 Copynumber: 5.2 Consensus size: 158
11665389 CCCGGTCTAA
* *
11665399 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-AGACCGAGGGTTGCAGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGA-ACCGAGGGTTGCGGTAGTAGGATCGAC
* * * * * ** *
11665463 AGCACGCAGCGGGGACCGTGTCGATCCCTGGCTCACACATTTTACCTCTCCGGCCGGCTGAGCAC
65 AGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTTTACCTCTCCGGCCGGCTGAGCAC
*
11665528 CCGCACACCCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
* ** * * ** *
11665557 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACTGAGGGTTATGGTAGTGGGATCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGAACCGAGGGTTGCGGTAGTAGGATCGA
* * * * ** * * *
11665620 CCGCACTCTGAGGGGGATCGGGCCAATCCCCTTCTTGCGCATTCTACCTCTTC-GCCGGCTGACC
64 CAGCACGCAG-GGGGGACCGGGCCAATCCCCGGCTTGCGCATTTTACCTCTCCGGCCGGCTGAGC
* *
11665684 ACTCACACGCCCGTTTCGTGGGTTGGCTTAG
128 ACCCGCACGCCCGTTTCGTGGGTTGGCTTAG
* ** ** * * * * * *
11665715 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGGCTGAGGGTTGTGGCAATGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGAACCGAGGGTTGCGGTAGTAGGATCGA
* * * * * * * * * ** * *
11665778 CAACACGCTGAGGGGACCGGGCCGATCCCTGACTTGTGCATTATGCCTCTCCGGTTGGCTCAGCG
64 CAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTTTACCTCTCCGGCCGGCTGAGCA
*** * *
11665843 CCCGCACGCTTTTTTCATGGGTTGACTTAG
129 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
* * *
11665873 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAAGGTTGCGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGGTAGTAGGATCGACA
* * * **
11665938 GCACGCAGGGGGGACCGGGCTAATCCCCGGCTTGCGCATTTTGCCTCTCCGACCGGCTGAGTGCC
66 GCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTTTACCTCTCCGGCCGGCTGAGCACC
* *
11666003 CGCACGCTCGTTTTGTGGGTTGGCTTAG
131 CGCACGCCCGTTTCGTGGGTTGGCTTAG
* * *
11666031 GCATATGGAATTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGTAGGTCCATCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTT--G-C----GG----T-A
* * * * ** * * *
11666096 GTAGGATTGACAGCACGGAGGGGGGGACCAGGCCGATCCTTGGCTTGCGCATTCTGCCTCTTCGG
54 GTAGGATCGACAGCACGCA-GGGGGGACCGGGCCAATCCCCGGCTTGCGCATTTTACCTCTCCGG
* * * * **
11666161 CTGGTTGAGCACACGTACGCTTGTTTCGTGGGTTGGCTTAG
118 CCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAG
* *
11666202 GCATATGGAGTTCGTT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11666228 ACCCTAGTCG
Statistics
Matches: 533, Mismatches: 117, Indels: 29
0.78 0.17 0.04
Matches are distributed among these distances:
157 37 0.07
158 345 0.65
159 35 0.07
160 1 0.00
161 1 0.00
165 2 0.00
169 1 0.00
170 21 0.04
171 90 0.17
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGGTAGTAGGATCGACA
GCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTTTACCTCTCCGGCCGGCTGAGCACC
CGCACGCCCGTTTCGTGGGTTGGCTTAG
Found at i:11666449 original size:58 final size:58
Alignment explanation
Indices: 11666358--11666471 Score: 192
Period size: 58 Copynumber: 2.0 Consensus size: 58
11666348 CGCTCGTTTC
* *
11666358 GTGGGTTGACTTAGGCATACGGAGTTCAGCCCCATTTTAAGCATACGGAGTTCATTTT
1 GTGGGTTGACTTAGGCATACGGAGTTCAGCCCCAGTCTAAGCATACGGAGTTCATTTT
* *
11666416 GTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATT
1 GTGGGTTGACTTAGGCATACGGAGTTCAGCCCCAGTCTAAGCATACGGAGTTCATT
11666472 CCCAGTCTAA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 52 1.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (58 bp):
GTGGGTTGACTTAGGCATACGGAGTTCAGCCCCAGTCTAAGCATACGGAGTTCATTTT
Found at i:11666466 original size:26 final size:26
Alignment explanation
Indices: 11666430--11666482 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11666420 GTTGACTTAG
11666430 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
11666456 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11666482 G
1 G
11666483 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11666758 original size:158 final size:158
Alignment explanation
Indices: 11666456--11666955 Score: 456
Period size: 158 Copynumber: 3.2 Consensus size: 158
11666446 CCCAGTCTAA
* * * * ** *
11666456 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGACCGAACCGAGGGTTGCAGCAGCAGGATCAAC
1 GCATATGGAGTTCATT-CCATGTCTAAGACCAGGCTGGACCGAGGGTTGTGGCAGCAGGATCGAC
* ** * * * * * ** * * ** * * *
11666520 AGCACACAGGGGGGATCGGGCCGATCCTCGGCTTGCATATTCTGCCT-TTTCGATCGGTTGAGCG
65 AACATGCAGGGGGGACCGGGTCAATCCCCGGCTTACGCATTATGCCTCTCT-GGCCGGCTCAGCA
*
11666584 CCCGCACGC-CGATTTCGTGTGTTGGCTTAG
129 CCCGCACGCTCG-TTTCGTGGGTTGGCTTAG
* * * * * *
11666614 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGATCGAGGGTTGTGGCAGCGGGA-CTGG
1 GCATATGGAGTTCATTCCATGTCTAAG-ACCAGGCTGGACCGAGGGTTGTGGCAGCAGGATC-GA
* * ** * *
11666677 CAGCATGCAGAGGGGGACCGGGTCGATCCTTGGCTTACGCATTATGCCTCTTTGGTCGGCTCAGC
64 CAACATGCAG-GGGGGACCGGGTCAATCCCCGGCTTACGCATTATGCCTCTCTGGCCGGCTCAGC
* *
11666742 ACCCGCA-GCTCGTTTCGTGGGTTGACTTAT
128 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
11666772 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGGCTGGACCTAGGGTTGTGGCAGCAGGATCGAC
1 GCATATGGAGTTCATT-CCATGTCTAAGACCAGGCTGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
11666836 AACATGTAGGGGGGACTGGGTCAATCCCCGGCTTACGCATTCTGCCTCTCTGGCCGGCTGAGCCC
65 AACATGCAGGGGGGACCGGGTCAATCCCCGGCTTACGCATTATGCCTCTCTGGCCGGCTCAGCAC
11666901 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
11666930 GCTTATGAAGTTCATTCCATGTCTAA
1 GCATATGGAGTTCATTCCATGTCTAA
11666956 CCATATGGAG
Statistics
Matches: 281, Mismatches: 50, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
157 63 0.22
158 159 0.57
159 56 0.20
160 3 0.01
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCATGTCTAAGACCAGGCTGGACCGAGGGTTGTGGCAGCAGGATCGACA
ACATGCAGGGGGGACCGGGTCAATCCCCGGCTTACGCATTATGCCTCTCTGGCCGGCTCAGCACC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Done.