Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 73 of 402
Found at i:11667687 original size:26 final size:26
Alignment explanation
Indices: 11667651--11667703 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11667641 GTTGACTTAG
11667651 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
11667677 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11667703 G
1 G
11667704 ATCAAATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11669821 original size:158 final size:159
Alignment explanation
Indices: 11669253--11670162 Score: 666
Period size: 159 Copynumber: 5.8 Consensus size: 159
11669243 GATTAGGCCA
* * * * * * *
11669253 ATCCCCGGCTTGTGCATTCTACCTCTCCGACCGGCTAAGCGCTCGCATGCCCGTTTCGTGGGTTG
1 ATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTG
* * ** * ** **
11669318 GT-TTAGGCATAGGGAGTTCATT-CCATGTGTAAGCCCCAG-CCGGACCAAGGGTTGTGGCAGTG
66 ATCTTAGGCATAGGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCAGCAGCA
*
11669380 GGATTGGCAGCACGCAGAGGGGGACCGGGCTG
129 GGATCGGCAGCACGCAG-GGGGGACCGGGCTG
* * * * * * * * **
11669412 AT-CCTCGGCTTGCGCATTATGCCTCTCCAATCGGCTCAGTGCCTGCACGCTCATTTTGTGGGTT
1 ATCCCT-GGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTT
* * * *
11669476 GA-CTTAGGCATA-CGAGTTCATTCCCAATCTAAGATCAGATCGGACTGAGGGTTGCAGCAGCAG
65 GATCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAG
* *
11669539 GATCGACAGCACGCAGGGGGGACCGGGCCG
130 GATCGGCAGCACGCAGGGGGGACCGGGCTG
* * *
11669569 ATCCC-GGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGTACAT--TCGTTTCATGGGT
1 ATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCG--CATGCTCGTTTCATGGGT
* ** * * *
11669631 TG-GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGCCCGAGGGTTGCAACAGCA
64 TGATCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCA
* *
11669695 GGATCGGTAGCACGCAGGGGGGACCGGGTTG
129 GGATCGGCAGCACGCAGGGGGGACCGGGCTG
* *
11669726 ATCCCTGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCACCCGCATGCTCGTTTCATGGGTT-
1 ATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTG
* ** * * ** **
11669790 ATCTTAGGGATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGGCAGTG
66 ATCTTAGGCATAGGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCAGCAGCA
* * ** * * ** **
11669853 GGACCGACAGCATACAAAGGGGGATCGATCCA
129 GGATCGGCAGCACGC-AGGGGGGACCGGGCTG
* * * * ** * * * * * *
11669885 AT-CTTCGGCTTGCACATTATGCCTCTCCGGCCGATTCAGTGCCCGTACGCTTGTTTTATGGGTT
1 ATCCCT-GGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTT
* * * * * * * * **
11669949 G-GCTTAGGCATACGGAGTTCATTCCCAGTATAAGATCAGACCGAACTGAGTGTTGTAGTAATAG
65 GATCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAG
*
11670013 GATCGGCAGCACGTAAGGGGGGACCGGGCTG
130 GATCGGCAGCACG-CAGGGGGGACCGGGCTG
* * * * * * * **
11670044 ATCCCCGGCTTGCACATTCTACCTCT-CTAGCCGGTTAAGCGCCCGCACGCTCGTTTTGTGGGTT
1 ATCCCTGGCTTGCGCATTCTGCCTCTCCGA-CCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTT
* * * * * *
11670108 G-GCTTAGGCACACGGAGTTCATTCCCAGTCTAAGACCGGACCGAACCGAGGGTTG
65 GATCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
11670163 ACCGCCCGTA
Statistics
Matches: 586, Mismatches: 142, Indels: 46
0.76 0.18 0.06
Matches are distributed among these distances:
156 55 0.09
157 96 0.16
158 155 0.26
159 276 0.47
160 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
ATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTG
ATCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGG
ATCGGCAGCACGCAGGGGGGACCGGGCTG
Found at i:11670249 original size:26 final size:26
Alignment explanation
Indices: 11670197--11670249 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11670187 GTTGGCTTAG
*
11670197 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTATAA
*
11670223 GCATACGGAGTTCATTCCCA-GTATAA
1 GCATACAGAGTTCATT-CCATGTATAA
11670249 G
1 G
11670250 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTATAA
Found at i:11670601 original size:26 final size:26
Alignment explanation
Indices: 11670565--11670617 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11670555 GTTGACTTAG
*
11670565 GCATACGGAGTTCATCCCCGGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
11670591 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11670617 G
1 G
11670618 ATTGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11670944 original size:26 final size:26
Alignment explanation
Indices: 11670907--11670959 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
11670897 GTTGACTTTT
11670907 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
11670933 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
11670959 G
1 G
11670960 ATTGAACCGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11670980 original size:342 final size:349
Alignment explanation
Indices: 11670165--11671278 Score: 1094
Period size: 353 Copynumber: 3.1 Consensus size: 349
11670155 GAGGGTTGAC
* * * *
11670165 CGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATAC-AGAGTTCATTCCATGTCTAAGCATAC
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCAGGTCTAAGCATAC
* * ** * * * *
11670229 GGAGTTCATTCCCAGTATAAGATCAG-ACCGAACCAAGGGTTGCAGTAGCAGGACCAGCAGTAGG
65 AGAGTTCATTCCCAGTCTAAGATTGGAACAG-ACCAAAGG-TG-TGTAGCA-GACCAGCA-CAGG
** * * * * * * *
11670293 ATCGGTAGCACGTAAGAGAGGATCGGGCTGATCCTCGACTTACGCATTCTGCCTCTCCGATCAGT
125 ATCGACAGCACG-CAG-GGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCA-C
* * * *
11670358 TGAGCACCCGCAC-GCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGC
187 TGAGCGCCCGCACGGC-CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
* * *
11670422 CCCAGTCGAACCAAGGGTTGTGGTAGCAGGATCGGCAGCGAGATCGACAGCATACAGAGGAGGAC
251 CCCAGTCGGACCAAGGGTTGTGGTAGCAGGA----C--CGACA--G-CA-CAT--AGAGGGGGAC
* * *
11670487 CGGGCTGATCCCC-AGCTTACTCATTATGCCTC-TCGGGCCGGCTAAG
304 CGAGCTGATCCCCGA-CTTACGCATTATGCCTCTTC-GGCCGGCTCAG
* * * **
11670533 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCGGTCTAAGCATATG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCAGGTCTAAGCATACA
* * * *
11670598 GAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAA-G-GT-T-GC-GA-CAGTA-A-GATCGGC
66 GAGTTCATTCCCAGTCTAAGATTGGAACAGACCAAAGGTGTGTAGCAGACCAGCACAGGATCGAC
* * * * *
11670655 AGCACGCAGGGGGGACTGGGTCGATCCCCGGCTTACGCATTCTGCCTCTTCAATCGACTGAGGGC
131 AGCACGCA-GGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATC-ACTGAGCGC
*
11670720 CCGCACGGCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGTCCCAG-CT
194 CCGCACGGCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-
*
11670784 GGACCAAGGGATGTGGTAGCAGGACCGACAGCACATAGAGGGGGACCGAGC-GATCCCCGACTTA
258 GGACCAAGGGTTGTGGTAGCAGGACCGACAGCACATAGAGGGGGACCGAGCTGATCCCCGACTTA
*
11670848 CGCATTATGCCTCTTCGACCGGCTCAG
323 CGCATTATGCCTCTTCGGCCGGCTCAG
* ** *
11670875 CGCCCGCACGCTCATTTCGTGGGTTGACTTTTGCATACGAAGTTCATTCCATGTCTAAGCATACA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCAGGTCTAAGCATACA
*
11670940 GAGTTCATTCCCAGTCTAAGATT-GAACCGTACCAAAGGTTGTGGTAGCATGACCAGCAGCAGGA
66 GAGTTCATTCCCAGTCTAAGATTGGAACAG-ACCAAAGG-TGT-GTAGCA-GACCAGCA-CAGGA
* * * *
11671004 TCGACAGCACGCAGGGGGACCGGGCCGATCCCCGGCTTGCGTATTCTACCTCTCCGACCAACTGA
126 TCGACAGCACGCAGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATC-ACTGA
* *
11671069 GCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
190 GCGCCCGCACGGCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
* * ** * * * ** * *
11671134 ATCAGACTGAGGGTTGTGGCAGC-GAGACCGGCAGCACATAGAGAGGGATTGAGCTGATCCTCGG
255 GTCGGACCAAGGGTTGTGGTAGCAG-GACCGACAGCACATAGAGGGGGACCGAGCTGATCCCCGA
* * *
11671198 CTTGCGCATTATGCCTCTCCGGTCGGCTCAG
319 CTTACGCATTATGCCTCTTCGGCCGGCTCAG
* * * *
11671229 CACCTGAACGCTCGTTTCATGGGTTGACTTAGGCATAC-AGAGTTCATTCC
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCC
11671279 CAATCTAAGA
Statistics
Matches: 628, Mismatches: 93, Indels: 64
0.80 0.12 0.08
Matches are distributed among these distances:
341 4 0.01
342 116 0.18
343 17 0.03
345 5 0.01
346 2 0.00
347 2 0.00
348 2 0.00
349 4 0.01
350 2 0.00
351 5 0.01
352 1 0.00
353 146 0.23
354 91 0.14
355 119 0.19
356 16 0.03
357 1 0.00
359 4 0.01
360 2 0.00
362 2 0.00
363 1 0.00
365 1 0.00
367 1 0.00
368 82 0.13
369 2 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (349 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCAGGTCTAAGCATACA
GAGTTCATTCCCAGTCTAAGATTGGAACAGACCAAAGGTGTGTAGCAGACCAGCACAGGATCGAC
AGCACGCAGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCACTGAGCGCCC
GCACGGCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA
CCAAGGGTTGTGGTAGCAGGACCGACAGCACATAGAGGGGGACCGAGCTGATCCCCGACTTACGC
ATTATGCCTCTTCGGCCGGCTCAG
Found at i:11671444 original size:158 final size:158
Alignment explanation
Indices: 11671029--11671447 Score: 398
Period size: 159 Copynumber: 2.6 Consensus size: 158
11671019 GGGACCGGGC
* * * ** * *
11671029 CGATCCCCGGCTTGCGTATTCTACCTCTCCGACCAACTGAGCGCCCGCACGCCCGTTTCGTGGGT
1 CGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
* * * * *
11671094 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCAGACTGAGGGTTGTGGCAGCGA
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAATCAGACCGAGGGTTGCGGCAGAGA
* ***
11671159 GACCGGCAGCACATAGAGAGGGATTGAG
131 GACCGACAGCACATAGAGAGGGACCAAG
* ** * * * *
11671187 CTGAT-CCTCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCACCTGAACGCTCGTTTCATGG
1 C-GATCCCT-GGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGG
* * * ** *
11671251 GTTGACTTAGGCATACAGAGTTCATTCCCA-ATCTAAG-ATTAGA-CTGGACCGAGGGTTGCGGC
64 GTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCA-ATC-AGACCGAGGGTTGCGGC
** * * * *
11671313 AGTAG-GATTGATAGCACGTAGGGGGGGACCAAG
126 AG-AGAGACCGACAGCACATAGAGAGGGACCAAG
* * *
11671346 CGATCCCTGGCTTGTGCATTCTGGCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCGTGGGT
1 CGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
*
11671411 TGGCTTTGGCATACGGAGTTCATTCCATGTCTAAGCA
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
11671448 TACGGAGTTC
Statistics
Matches: 203, Mismatches: 49, Indels: 17
0.75 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 82 0.40
159 114 0.56
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
CGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAATCAGACCGAGGGTTGCGGCAGAGA
GACCGACAGCACATAGAGAGGGACCAAG
Found at i:11671455 original size:26 final size:26
Alignment explanation
Indices: 11671419--11671471 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11671409 GTTGGCTTTG
11671419 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
11671445 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
11671471 G
1 G
11671472 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:11671956 original size:159 final size:158
Alignment explanation
Indices: 11671687--11671992 Score: 389
Period size: 159 Copynumber: 1.9 Consensus size: 158
11671677 AAAGATCGAA
* * * * * *
11671687 CCAGACTGAGGGTTGGGGTAGCAGGATCGGCAAGATGCAGGGGGGATCGGGCCGATCCTCGGCTT
1 CCAGACCGAGGGTTGGGGCAGCAGGATCGACAACACGCAGGGGGGACCGGGCCGATCCTCGGCTT
* * * * * *
11671752 GCGCATTCTGCCTCTCCGACCGACTGAGCGCCTGCACACCTGTTTCACAGGTTGGGTTGGGCAGA
66 ACGCATTCTACCTCTCCGACCGACTGAGCACCCGCACACCTGTTTCACAGGTTGGCTTAGGCAGA
*
11671817 GGGAGTTCATTCCATGTTGAAGCCCCAG
131 CGGAGTTCATTCCATGTTGAAGCCCCAG
* **
11671845 CCAGACCGAGGGTTGTGGCAGTGGGATCGACAACACGCAGAGGGGGACCGGGCCGATCCTCGGCT
1 CCAGACCGAGGGTTGGGGCAGCAGGATCGACAACACGCAG-GGGGGACCGGGCCGATCCTCGGCT
** * **
11671910 TACGCATTCTACCTCTCCGGTCGACTGAGCACCCGCAC-GCTCGTTTCGTAGGTTGGCTTAGGCA
65 TACGCATTCTACCTCTCCGACCGACTGAGCACCCGCACACCT-GTTTCACAGGTTGGCTTAGGCA
*
11671974 TACGGAGTTCATTCCATGT
129 GACGGAGTTCATTCCATGT
11671993 CAAGCATACA
Statistics
Matches: 124, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
158 34 0.27
159 90 0.73
ACGTcount: A:0.18, C:0.28, G:0.33, T:0.21
Consensus pattern (158 bp):
CCAGACCGAGGGTTGGGGCAGCAGGATCGACAACACGCAGGGGGGACCGGGCCGATCCTCGGCTT
ACGCATTCTACCTCTCCGACCGACTGAGCACCCGCACACCTGTTTCACAGGTTGGCTTAGGCAGA
CGGAGTTCATTCCATGTTGAAGCCCCAG
Found at i:11673116 original size:25 final size:25
Alignment explanation
Indices: 11673071--11673122 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 25
11673061 TCCGTTTGAT
11673071 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGG-ATGAACTCCGTATG
11673097 CTTAGACTTGGG-TGAACTCCGTATG
1 CTTAGAC-TGGGATGAACTCCGTATG
11673122 C
1 C
11673123 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 14 0.56
26 7 0.28
27 4 0.16
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCCGTATG
Found at i:11673385 original size:24 final size:24
Alignment explanation
Indices: 11673358--11673410 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
11673348 CACCCCTGCG
*
11673358 TGCTGTCGATCCTATTACTGCTCC
1 TGCTATCGATCCTATTACTGCTCC
* * *
11673382 TGCTATCGATCCTGTTGCTGGTCC
1 TGCTATCGATCCTATTACTGCTCC
11673406 TGCTA
1 TGCTA
11673411 CCGTAACCTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.11, C:0.30, G:0.21, T:0.38
Consensus pattern (24 bp):
TGCTATCGATCCTATTACTGCTCC
Found at i:11673473 original size:26 final size:26
Alignment explanation
Indices: 11673435--11673487 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11673425 CCGATCCGAT
*
11673435 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11673461 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
11673487 C
1 C
11673488 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11673806 original size:159 final size:158
Alignment explanation
Indices: 11673460--11673954 Score: 412
Period size: 159 Copynumber: 3.1 Consensus size: 158
11673450 AACTCTGTAT
* * * ** *
11673460 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTATGCGGGCACTCA
1 GCTTAGAC-TGGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* * * * * * * * * **
11673524 GCCGACCGGAGAGGCA-AATGA-GCAAGCCGAGGACCGGCCC-AGTCCCCCTTGCATGCCGTTGA
65 GCCGATCGAAGAGGCAGAAT-ACGCAAGCTGGGGATCGGCCCGA-TCCCCCCTACGTGCTGCCGA
* * * * * *
11673586 TCCTGCTACCGCAACCCTCGGTCTGGTCT-GA
128 TCCCGCTGCCACAACCCTTGGTCCGG-CTGGG
* ** * * *
11673617 TCTTAGACTGGGAATAAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGTTGAG
1 GCTTAGACTGGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * * *** *
11673682 CTGGTC-AGAGAGGCATAATACGCAAGTTGGGGATCGGCCCGATCCTCTTTTACGTGCTGCTGAT
66 CCGATCGA-AGAGGCAGAATACGCAAGCTGGGGATCGGCCCGATCC-CCCCTACGTGCTGCCGAT
11673746 CCCGCTGCCACAACCCTTGGTCCGGCTGGG
129 CCCGCTGCCACAACCCTTGGTCCGGCTGGG
* * *
11673776 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* * *
11673840 GCCGATCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGATCCCCCCTGCGTGCTGCCGATC
65 GCCGATCGAAGAGGCAGAATACGCAAGCTGGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATC
* ** * *
11673905 CTGCTGCTGCAACCCTTGGTCCGATCT-GA
130 CCGCTGCCACAACCCTTGGTCCG-GCTGGG
* *
11673934 TCTTAGACTGGGAATGAACTC
1 GCTTAGACTGGGAATAAACTC
11673955 TGTATGTTTA
Statistics
Matches: 271, Mismatches: 56, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
156 1 0.00
157 65 0.24
158 76 0.28
159 127 0.47
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACTGGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
CCGATCGAAGAGGCAGAATACGCAAGCTGGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCC
CGCTGCCACAACCCTTGGTCCGGCTGGG
Found at i:11673965 original size:26 final size:26
Alignment explanation
Indices: 11673936--11673986 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11673926 CGATCTGATC
*
11673936 TTAGACTGGGAATGAACTCTGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
*
11673962 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
11673987 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:11674696 original size:26 final size:26
Alignment explanation
Indices: 11674658--11674710 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11674648 GGCTCAAAAT
11674658 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11674684 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
11674710 C
1 C
11674711 ATAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11675049 original size:26 final size:26
Alignment explanation
Indices: 11674999--11675051 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11674989 CCGGTTTGAT
**
11674999 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11675025 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11675051 C
1 C
11675052 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11676105 original size:26 final size:26
Alignment explanation
Indices: 11676076--11676128 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11676066 CCGGTCTGAT
11676076 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
11676102 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
11676128 C
1 C
11676129 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:11676209 original size:367 final size:353
Alignment explanation
Indices: 11675524--11676230 Score: 821
Period size: 367 Copynumber: 2.0 Consensus size: 353
11675514 TATCGGTCCC
*
11675524 GCTGCCACAACCCTCGATCCGGCTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGATCCGACTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * *
11675589 CCACAAAACGGGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCACAAGTCAGGGATCGAC
66 CCACAAAACGAGCGTGCGGGTGCTCAGCCGACCGGAAAAGCAGAATGCACAAGCCAGAGATCGAC
* * ** *
11675654 CTGGTCCCCCTGTGTGTTGTTGATCCTGCTATTGTAACCCTCCATCCGGTCCGATCTTAGACTAT
131 CTGATCCCCCTGTGTGTTGTTGATCCTGCTACTACAACCCTCCATCCGGTCCGATCTTAGACTAG
* * * * *
11675719 GAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGACACGAG
196 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG
* * * * *
11675784 CGTGCGGGTGCTCAGCCAGCTGGAGAGGCATAATGCGCAAGCCGAGGATCAGCTCGGTCCCCTTC
261 CGTACGGGTGCTCAGCCAGCTAGAGAGCCAGAATGCGCAAGCCGAGGATCAGCTCGGTCCCCCT-
11675849 TGCGCGCTGTCAATCCCGCTGCCGGTCTT
325 TGCGCGCTGTCAATCCCGCTGCCGGTCTT
* *
11675878 GCTGCCACAACCCTC-AGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 GCTGCCACAACCCTCGA-TCCGACTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAA
* * * ***
11675942 CCCACGAAACGAGCGTGGGGGTGCTCAGCTGGTTGGAAAAGCAGAATGCACAAGCCAGAGATCG-
65 CCCACAAAACGAGCGTGCGGGTGCTCAGCCGACCGGAAAAGCAGAATGCACAAGCCAGAGATCGA
** * * **
11676006 GTTCGATCCCCCCTACATGCTGCCGATCCTGTTGTTGGTCCTGCTGCTACAACCCTCGGTCCGGT
130 CCT-GAT--CCCC--C-TG-T---G----TGTTGTTGATCCTGCTACTACAACCCTCCATCCGGT
* *
11676071 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC
181 CCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGC
* * * *
11676135 CAACCCACGAAACGAGCGTACGGGTGCTCAGTC-GATCAGAGAGCCAGAATGCGTAAGCCGGGGA
245 CAACCCACGAAACGAGCGTACGGGTGCTCAGCCAGCT-AGAGAGCCAGAATGCGCAAGCCGAGGA
* *
11676199 TC-GACTCGGTCCCCCTTGCGTGCTGTCGATCC
309 TCAG-CTCGGTCCCCCTTGCGCGCTGTCAATCC
11676231 TACTACTGCA
Statistics
Matches: 292, Mismatches: 43, Indels: 24
0.81 0.12 0.07
Matches are distributed among these distances:
353 2 0.01
354 114 0.39
356 4 0.01
358 1 0.00
359 2 0.01
360 1 0.00
363 1 0.00
366 17 0.06
367 149 0.51
368 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.21
Consensus pattern (353 bp):
GCTGCCACAACCCTCGATCCGACTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACAAAACGAGCGTGCGGGTGCTCAGCCGACCGGAAAAGCAGAATGCACAAGCCAGAGATCGAC
CTGATCCCCCTGTGTGTTGTTGATCCTGCTACTACAACCCTCCATCCGGTCCGATCTTAGACTAG
GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG
CGTACGGGTGCTCAGCCAGCTAGAGAGCCAGAATGCGCAAGCCGAGGATCAGCTCGGTCCCCCTT
GCGCGCTGTCAATCCCGCTGCCGGTCTT
Found at i:11676445 original size:159 final size:158
Alignment explanation
Indices: 11676101--11676552 Score: 453
Period size: 159 Copynumber: 2.9 Consensus size: 158
11676091 AACTCCGTAT
* **
11676101 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAG
* * * * * *
11676166 TCGATCAGAGAGCCAGAATGCGTAAGCCGGGGATCGACTCGGTCCCCCTTGCGTGCTGTCGATCC
66 TCGACCAAAGAGCCAGAATGCGTAAGCCGAGGATCGACCCGATCCCCCTTGCGTGCTATCGATCC
** * *
11676231 TACTACTGCAACCCTCGGTTCGATCTGA
131 TACTACCACAACCCTCGGTCCGAGCTGA
* * * ** * * *
11676259 TCTTAGAC-TGGGAATGAACTCTGTATGCTTAAGTAAACCCACGAAACGAGCATGCGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCA
* * * * * *
11676323 G-CAGGCCAAAGAGGCATAATTCGTAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTATCGG
65 GTC-GACCAAAGAGCCAGAATGCGTAAGCCGAGGATCGACCCGATCCCCCT-TGCGTGCTATCGA
* *
11676387 TCC-AGCTGCCACAACCCTCGGTCCG-GCTAGG
128 TCCTA-CTACCACAACCCTCGGTCCGAGCT-GA
* * * *
11676418 GCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCATGAAACGGGCATACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAG
* * * * * * * * *
11676483 TCGACCGAAGAGGCAGAACGCATAAGCTGGGGATCGACCCGGTCCCCCTTGCGTGCTGTGGATCC
66 TCGACCAAAGAGCCAGAATGCGTAAGCCGAGGATCGACCCGATCCCCCTTGCGTGCTATCGATCC
11676548 TACTA
131 TACTA
11676553 TTAGTCCTGC
Statistics
Matches: 231, Mismatches: 55, Indels: 16
0.76 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 107 0.46
159 120 0.52
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAG
TCGACCAAAGAGCCAGAATGCGTAAGCCGAGGATCGACCCGATCCCCCTTGCGTGCTATCGATCC
TACTACCACAACCCTCGGTCCGAGCTGA
Found at i:11676627 original size:26 final size:26
Alignment explanation
Indices: 11676589--11676641 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11676579 TCGGTCCCAT
11676589 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11676615 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
11676641 C
1 C
11676642 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11676851 original size:513 final size:507
Alignment explanation
Indices: 11675735--11677178 Score: 1547
Period size: 513 Copynumber: 2.8 Consensus size: 507
11675725 ACTCTGTATG
* * * *
11675735 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGACACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGTGCTGAGC
** * * * * *
11675800 C-AGCTGGAGAGGCATAATGCGCAAGCCGAGGATCAGCTCGGTCCCCTTCTGCGCGCTGTCAATC
65 CGA-CCAGAGAGGCATAATACGCAAGCCGAGGATCGGCCCGATCCCCCTCT--GCG-TG-C--T-
* ** * * *
11675864 CCGCTGCCGGTCTTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCGT
122 ---AT--CGGTCCAGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCT
* * ** * * * *
11675929 ATGCCTAAGCCAACCCACGAAACGAGCGTGGGGGTGCTCAGCTGGTTGGAA-AAGCAGAATGCAC
182 ATGCCTAAGCCAACCCATGAAACGGGCGTACGGGTGCTCAG-TCGATCGAAGAGGCAGAATGCAC
* * ** * * * * * * * *
11675993 AAGCCAGAGATCGGTTCGATCCCCCCTACATGCTGCCGATCCTGTTGTTGGTCCTGCTGCTACAA
246 AAGCTAGGGATCGGCCCGGTCCCCCTTGCGTGCTGTCGATCCT-CTATT-GTCCTGCT--TGCAA
**
11676058 CCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCC
307 CCCTCGGT-CGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCC
* *
11676123 GTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGTCGATCAGAGAGCCAGAATGCG
371 GTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGATCAGAGAGCCAGAATGCG
* *
11676188 TAAGCCGGGGATCGACTCGGTCCCCCTTGCGTGCTGTCGATCCTACTACTGCAACCCTCGGTTCG
436 TAAGCCGGGGATCGACTCAGTCCCCCTTGCGTGCTGTCGATCCTACTACTGCAACCCTCAGTTCG
*
11676253 ATCTGAT
501 ATCTAAT
* * * *
11676260 CTTAGACTGGGAATGAACTCTGTATGCTTAAGTAAACCCACGAAACGAGCATGCGG-GCATTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTGC--TGAG
* * * * *
11676324 CAGGCCAAAGAGGCATAATTCGTAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTATCGGTC
64 CCGACCAGAGAGGCATAATACGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTATCGGTC
* *
11676389 CAGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCCAAGCCA
129 CAGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* ** * * * *
11676454 ACCCATGAAACGGGCATACGGGCACTCAGTCGACCGAAGAGGCAGAACGCATAAGCTGGGGATCG
194 ACCCATGAAACGGGCGTACGGGTGCTCAGTCGATCGAAGAGGCAGAATGCACAAGCTAGGGATCG
* *
11676519 ACCCGGTCCCCCTTGCGTGCTGTGGATCCTACTATTAGTCCTGCTATTGCAACCCTCGGCTCGGT
259 GCCCGGTCCCCCTTGCGTGCTGTCGATCCT-CTATT-GTCCTGC--TTGCAACCCTCGG-TCGGT
* * *
11676584 CCCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAACC
319 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
* * * *
11676649 AACCCATGAAACGAGCGTACGGGCGCTCAGCC-AGTCGGAGAGGCAGAATGTGTAAGCCGGGGAT
384 AACCCACGAAACGAGCGTACGGGCGCTCAGCCGA-TCAGAGAGCCAGAATGCGTAAGCCGGGGAT
* * * *
11676713 CGAC-CTAGTCCCCTCTTTCGTGCTGTCGATCCTGCTACTGGAACCCTCAGTTCGGTCTAAT
448 CGACTC-AGTCCCC-CTTGCGTGCTGTCGATCCTACTACTGCAACCCTCAGTTCGATCTAAT
*
11676774 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGTGCTGAGCC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTGCTGAGCC
* * * * *
11676839 GACCAGAGAGGCATAATACGCAAGCCGAGGATCGGCCCAATCCCACTCTACGTGTTGTCGGTCCC
66 GACCAGAGAGGCATAATACGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTATCGGT-CC
* * * * *
11676904 A-CTGCCACAACCCTCGATCCGGTTGGGGTTTAGACATGGAATTAACTCCCTACGCCTAAGCCAA
130 AGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* ** * *
11676968 CCCATGAAACAGGCGTACGGGTGCTCAACCGGTC-AGAGAGGCAGAATGCGCAAG-TCAGGGATC
195 CCCATGAAACGGGCGTACGGGTGCTCAGTCGATCGA-AGAGGCAGAATGCACAAGCT-AGGGATC
* * * *
11677031 GGCCTGGT-CCCCTCTGTGTGCTGTTGAT-C-CTATTG--C--C--GCAACCCTCGGTTCGGTTC
258 GGCCCGGTCCCCCT-TGCGTGCTGTCGATCCTCTATTGTCCTGCTTGCAACCCTCGG-TCGGTCC
* * *
11677087 AATCTTAGACTGGGAACGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCA
321 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCA
*
11677151 ACCCACGAAACGAGCATACGGGCGCTCA
385 ACCCACGAAACGAGCGTACGGGCGCTCA
11677179 ACCTACCAGA
Statistics
Matches: 780, Mismatches: 123, Indels: 56
0.81 0.13 0.06
Matches are distributed among these distances:
500 1 0.00
501 99 0.13
505 1 0.00
507 1 0.00
509 1 0.00
510 5 0.01
512 15 0.02
513 457 0.59
514 96 0.12
515 4 0.01
519 1 0.00
521 1 0.00
522 2 0.00
523 5 0.01
524 2 0.00
525 89 0.11
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (507 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTGCTGAGCC
GACCAGAGAGGCATAATACGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTATCGGTCCA
GCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCATGAAACGGGCGTACGGGTGCTCAGTCGATCGAAGAGGCAGAATGCACAAGCTAGGGATCGGC
CCGGTCCCCCTTGCGTGCTGTCGATCCTCTATTGTCCTGCTTGCAACCCTCGGTCGGTCCAATCT
TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
GAAACGAGCGTACGGGCGCTCAGCCGATCAGAGAGCCAGAATGCGTAAGCCGGGGATCGACTCAG
TCCCCCTTGCGTGCTGTCGATCCTACTACTGCAACCCTCAGTTCGATCTAAT
Found at i:11677073 original size:158 final size:158
Alignment explanation
Indices: 11676615--11677116 Score: 439
Period size: 158 Copynumber: 3.2 Consensus size: 158
11676605 ACTCCGTATG
* * *
11676615 CTTAGACATGGAATGAACTCTGTATGCCTAAACCAACCCATGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAGC
* * * * * * *
11676680 CAGTCGGAGAGGCAGAATGTGTAAGCCGGGGATCGACCTAGTCCCCTCTTTCGTGCTGTCGATCC
66 CGGTCAGAGAGGCAGAATGCGCAAG-CAGGGATCGGCCTAGTCCCCTCTAT-GTGCTGTCGATCC
* * * * *
11676745 TGCTACTGGAACCCTC-AGTTCGGTCTAAT
129 TACTGCCGCAACCCTCGAGTCCGGTCTAAT
* ** * *
11676774 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGC-GGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAG
** * * * * * * * *
11676837 CCGACCAGAGAGGCATAATACGCAAGCCGAGGATCGGCCCAATCCCACTCTACGTGTTGTCGGTC
65 CCGGTCAGAGAGGCAGAATGCGCAAGCAG-GGATCGGCCTAGTCCC-CTCTATGTGCTGTCGATC
* * **
11676902 CCACTGCCACAACCCTCGA-TCCGGT-TGGGGT
128 CTACTGCCGCAACCCTCGAGTCCGGTCT--AAT
* * * *
11676933 -TTAGACATGGAATTAACTCCCTACGCCTAAGCCAACCCATGAAAC-AGGCGTACGGGTGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTACGGGTGCTCAG
* * *
11676996 CCGGTCAGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCTGGTCCCCTCTGTGTGCTGTTGATCC
65 CCGGTCAGAGAGGCAGAATGCGCAAG-CAGGGATCGGCCTAGTCCCCTCTATGTGCTGTCGATCC
* *
11677061 TATTGCCGCAACCCTCG-GTTCGGT-TCAAT
129 TACTGCCGCAACCCTCGAGTCCGGTCT-AAT
*
11677090 CTTAGAC-TGGGAACGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
11677117 TTAGACTGGG
Statistics
Matches: 264, Mismatches: 66, Indels: 27
0.74 0.18 0.08
Matches are distributed among these distances:
157 6 0.02
158 161 0.61
159 95 0.36
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAGC
CGGTCAGAGAGGCAGAATGCGCAAGCAGGGATCGGCCTAGTCCCCTCTATGTGCTGTCGATCCTA
CTGCCGCAACCCTCGAGTCCGGTCTAAT
Found at i:11677126 original size:26 final size:26
Alignment explanation
Indices: 11677090--11677142 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11677080 TCGGTTCAAT
11677090 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
* *
11677116 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
11677142 C
1 C
11677143 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:11678272 original size:26 final size:26
Alignment explanation
Indices: 11678228--11678280 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11678218 TCGGTCTGAT
*
11678228 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
11678254 CTTAGACTAGGG-ATAAACTCCGTATG
1 CTTAGACT-GGGAATAAACTCCGTATG
11678280 C
1 C
11678281 CTAAGTCCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:11679295 original size:26 final size:26
Alignment explanation
Indices: 11679266--11679318 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11679256 CCGGACCGAT
11679266 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
11679292 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
11679318 C
1 C
11679319 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:11679719 original size:158 final size:158
Alignment explanation
Indices: 11679291--11679757 Score: 452
Period size: 158 Copynumber: 3.0 Consensus size: 158
11679281 AACTCCGTAT
* *
11679291 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAA
* * **
11679356 CCGGTCGAAGAGGCAGAATGCGTAAGTTGGGGA-CTGACCTGGTCCCCCT-TGCGTGCTGTCGAT
66 CCGATCGAAGAGGCAGAATGCGCAAG-TGGGGATC-GACCTGGTCCCCCTCTGTATGCTGTCGAT
** **
11679419 CCTGCTACCGTAACCCTCGATCCGGTCCAA
129 CCTGCTACCACAACCCTCGATCCACTCCAA
* * * ** *
11679449 TCTTAGAC-TGTGAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTTTGGGCGCT-A
1 GCTTAGACATG-GAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCA
* * * *
11679512 AGCCGATCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCTGGACCCCCTCTGTATGCTGTC-A
65 A-CCGATCGAAGAGGCAGAATGCGCAAGT-GGGGATCGACCTGGTCCCCCTCTGTATGCTGTCGA
* * * ***
11679576 GTCTCT-CTGCCACAACCCTCAGTTCTACT-GGG
128 -TC-CTGCTACCACAACCCTC-GATCCACTCCAA
* * *
11679608 GCTTAGACATGGAATAAACTCCCTATGCCTAAG-CAACCCACGAAACG-GACGTACGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAG-CGTACGGGTGCTCA
** *
11679671 ACCGATCGAAGAGGCAGAATGCGCAAGCTGGGGATC-AGTTCGGTCCCCC-CTGTATGCTGCCGA
65 ACCGATCGAAGAGGCAGAATGCGCAAG-TGGGGATCGACCT-GGTCCCCCTCTGTATGCTGTCGA
* *
11679734 TCCTGCTGCCATAACCCTCGATCC
128 TCCTGCTACCACAACCCTCGATCC
11679758 GGTTTGATCT
Statistics
Matches: 251, Mismatches: 43, Indels: 32
0.77 0.13 0.10
Matches are distributed among these distances:
156 5 0.02
157 33 0.13
158 152 0.61
159 53 0.21
160 8 0.03
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAA
CCGATCGAAGAGGCAGAATGCGCAAGTGGGGATCGACCTGGTCCCCCTCTGTATGCTGTCGATCC
TGCTACCACAACCCTCGATCCACTCCAA
Found at i:11679807 original size:26 final size:26
Alignment explanation
Indices: 11679766--11679818 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11679756 CCGGTTTGAT
11679766 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
* *
11679792 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
11679818 C
1 C
11679819 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:11680135 original size:26 final size:26
Alignment explanation
Indices: 11680106--11680156 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
11680096 CCGATTCGAT
11680106 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11680132 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
11680157 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11680358 original size:26 final size:26
Alignment explanation
Indices: 11680307--11680359 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11680297 GGCTCAAACT
*
11680307 CTTAGACTGAGAATGAACTCTATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
11680333 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCATATG
11680359 C
1 C
11680360 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:11680757 original size:13 final size:13
Alignment explanation
Indices: 11680739--11680763 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11680729 GATCGCTCAA
11680739 CCGATCGGAGAGG
1 CCGATCGGAGAGG
11680752 CCGATCGGAGAG
1 CCGATCGGAGAG
11680764 ACAAAATGCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.44, T:0.08
Consensus pattern (13 bp):
CCGATCGGAGAGG
Found at i:11680910 original size:26 final size:26
Alignment explanation
Indices: 11680858--11680910 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11680848 CTGATCTGAT
*
11680858 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
11680884 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
11680910 C
1 C
11680911 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:11681706 original size:26 final size:26
Alignment explanation
Indices: 11681662--11681714 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11681652 TCGGTCCGAT
*
11681662 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATAAACTTCGTATG
* *
11681688 CTTAGACTGGGGATAAACTTCGTATG
1 CTTAGACTGAGAATAAACTTCGTATG
11681714 C
1 C
11681715 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATAAACTTCGTATG
Found at i:11682051 original size:26 final size:26
Alignment explanation
Indices: 11682013--11682065 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11682003 CCGGTTTGAT
11682013 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
11682039 CTTAGACAT-GGAATGAATTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
11682065 C
1 C
11682066 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:11682393 original size:159 final size:157
Alignment explanation
Indices: 11682038--11682453 Score: 451
Period size: 159 Copynumber: 2.6 Consensus size: 157
11682028 AACTCTGTAT
* * *
11682038 GCTTAGACATGGAATGAATTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTG-TTAA
* ** * *
11682103 CCGATCGGAGAGGCAGCATGCGCAAGCTAGGGACCGGCCCAGTCCCCCCTACGTGCTGTCGATCC
65 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGTCGATCC
* *
11682168 TGCTGCCACAACCCCTGGTCTGGCCTGA
130 TGCTGCCACAACCCCTAGTCTAGCCTGA
** * * * *
11682196 TATTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGTGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGTT-A
* * * * **
11682260 ACCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATTGACCC-GATCCCTCTCTGTGTGCTGTCGA
64 ACCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAG-TCCC-CCCTACGTGCTGTCGA
* *
11682324 TCCTGCTGCCACAA-CCCTCAGTCTAGCTTGG
127 TCCTGCTGCCACAACCCCT-AGTCTAGCCTGA
* * * * * *
11682355 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTG-TTAA
* * *
11682420 CCGACCGGAGAGGCAGAATGCCCAAGTCGGGGAT
65 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGAT
11682454 GAGGCTGATC
Statistics
Matches: 210, Mismatches: 41, Indels: 13
0.80 0.16 0.05
Matches are distributed among these distances:
157 3 0.01
158 92 0.44
159 112 0.53
160 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGTTAAC
CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGTCGATCCT
GCTGCCACAACCCCTAGTCTAGCCTGA
Found at i:11682464 original size:159 final size:158
Alignment explanation
Indices: 11682038--11682540 Score: 500
Period size: 158 Copynumber: 3.2 Consensus size: 158
11682028 AACTCTGTAT
* * *
11682038 GCTTAGACATGGAATGAATTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTTAA
* * ** * * *
11682103 CCGATCGGAGAGGCAGCATGCGCAAGCTAGGGA-CCGGCCCAGTCCC-CCCTACGTGCTGTCGAT
66 CCGATCGGAGAGGCAGAATGCGCAAGC-GGGGATGAGGCCGA-TCCCTCTCTGCGTGCTGTCGAT
*
11682166 CCTGCTGCCACAACCC-CTGGTCTGGCCTGA
129 CCTGCTGCCACAACCCTC-GGTCTAGCCTGA
** * * * *
11682196 TATTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGTG-TTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTT-
* * * *
11682259 AACCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATTGA-CCCGATCCCTCTCTGTGTGCTGTCG
64 AACCGATCGGAGAGGCAGAATGCGCAAG-CGGGGA-TGAGGCCGATCCCTCTCTGCGTGCTGTCG
* * *
11682323 ATCCTGCTGCCACAACCCTCAGTCTAGCTTGG
127 ATCCTGCTGCCACAACCCTCGGTCTAGCCTGA
* * * * * *
11682355 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTTAA
* * * * **
11682420 CCGACCGGAGAGGCAGAATGCCCAAGTCGGGGATGAGGCTGATCCCT-TTTGCGTGCTACCGATC
66 CCGATCGGAGAGGCAGAATGCGCAAG-CGGGGATGAGGCCGATCCCTCTCTGCGTGCTGTCGATC
* ** *
11682484 CTACTGCTGCAACCCTCGGTCTAGTCTGA
130 CTGCTGCCACAACCCTCGGTCTAGCCTGA
*
11682513 CCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
11682541 TTAGATTGTG
Statistics
Matches: 277, Mismatches: 57, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.01
158 144 0.52
159 126 0.45
160 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTTAA
CCGATCGGAGAGGCAGAATGCGCAAGCGGGGATGAGGCCGATCCCTCTCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTCTAGCCTGA
Found at i:11683591 original size:158 final size:160
Alignment explanation
Indices: 11683247--11683591 Score: 360
Period size: 159 Copynumber: 2.2 Consensus size: 160
11683237 TGGGTCAAAC
* * * *
11683247 TCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCCCTCAG
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGAGCATGCGGGCACTCAG
** *
11683312 CCAGCTGAAGAGGCAAAATACGCAAGTTGGGGATCAGCCCAATCCCCCTCTGCGTGCTGTCGGTC
66 CCAGCTGAAGAGGCAAAATACGCAAGCCGGGGATCAGCCCAATCCCCCTCTGCGTGCTGTCGATC
* * *
11683377 CCACTACCACAACCCTCGGTCTGGCTGGGA
131 CCACTACCACAACCCTCGATCTCGATGGGA
* *
11683407 -CTTAGACAT-GGAATGAACTCCTTATGCCTAAGCCAAACCATGAAAC-AGGCATGTGGGCACTC
1 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGA-GCATGCGGGCACTC
* * * * * ** * * *
11683469 AGTC-GACTGGAGAGGCAGAATGCGTAAGCCGGGGATTGGCCCGAT-CCCCTTTGCGTGCTGTTG
64 AGCCAG-CTGAAGAGGCAAAATACGCAAGCCGGGGATCAGCCCAATCCCCCTCTGCGTGCTGTCG
** * * **
11683532 ATCCTGCTACCGCAACCTTCGATC-CGATTTGA
128 ATCCCACTACCACAACCCTCGATCTCGATGGGA
*
11683564 TCTTAGACTGGGAATGAACTACGTATGC
1 TCTTAGACTGGGAATGAACTCCGTATGC
11683592 TTAGACTTGG
Statistics
Matches: 150, Mismatches: 30, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
157 5 0.03
158 59 0.39
159 85 0.57
160 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (160 bp):
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGAGCATGCGGGCACTCAG
CCAGCTGAAGAGGCAAAATACGCAAGCCGGGGATCAGCCCAATCCCCCTCTGCGTGCTGTCGATC
CCACTACCACAACCCTCGATCTCGATGGGA
Found at i:11683606 original size:26 final size:26
Alignment explanation
Indices: 11683565--11683617 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11683555 CCGATTTGAT
11683565 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
11683591 CTTAGACTTGGG-ATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTACGTATG
11683617 C
1 C
11683618 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:11684305 original size:26 final size:26
Alignment explanation
Indices: 11684276--11684328 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11684266 CCGGTCCGCT
* *
11684276 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11684302 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11684328 C
1 C
11684329 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11685035 original size:26 final size:26
Alignment explanation
Indices: 11684997--11685049 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11684987 GGCTGAAACT
11684997 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11685023 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
11685049 C
1 C
11685050 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11690186 original size:26 final size:26
Alignment explanation
Indices: 11690157--11690209 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11690147 CCGGTTCGAT
11690157 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGCGG-ATGAACTCCGTATG
11690183 CTTAGACTGCGGATGAACTCCGTATG
1 CTTAGACTGCGGATGAACTCCGTATG
11690209 C
1 C
11690210 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGGATGAACTCCGTATG
Found at i:11690312 original size:184 final size:187
Alignment explanation
Indices: 11689998--11690490 Score: 528
Period size: 196 Copynumber: 2.6 Consensus size: 187
11689988 TCTGGCTGGG
* * * * * * * * *
11689998 GCTTAGACATGGAATGAACTCCCTATGCCGAAGCTAACCCACGAAATGGGTGCACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAA
* * * * * * * *
11690063 TCGATCGGAGAGGCAGAATGCGCAAGCTGAGGTTCGGCCCGATCCACCCTGCGTGCTATCGATCC
66 CCGATCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCCTACGTGCTACCGATCC
*
11690128 TA-CTG-T-CGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTAT
131 TATCTGCTACGCAACCCTCAGTCCGGTTCAATCTTAGACTGGGAATGAACTCCGTAT
* * * * *
11690182 GCTTAGAC-TGCGGATGAACTCCGTATGCCTAAGTCAACCTA-GAAAATGAGCGTACGGGTGCTC
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATG-AAACGAGCGTACGGGCGCTC
* *
11690245 AACCGATTGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTACCGAT
64 AACCGATCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCCTACGTGCTACCGAT
* *
11690310 CCTATTGCTGGTCCTGCTACCGCAACCCTCGGTCTGGTTCAATCTTAGACTGGGAATGAACTCCG
129 CCTA-------T-CTGCTA-CGCAACCCTCAGTCCGGTTCAATCTTAGACTGGGAATGAACTCCG
11690375 TAT
185 TAT
* * *
11690378 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAA
* * * * * *
11690443 CCGGTCAGAGAGGCAAAATGCACAAGCCAAGGACCGGCCCAGTCCCCC
66 CCGATCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCC
11690491 TTGCATGCTG
Statistics
Matches: 253, Mismatches: 40, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
183 3 0.01
184 106 0.42
193 3 0.01
194 1 0.00
196 137 0.54
197 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (187 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAA
CCGATCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCCTACGTGCTACCGATCC
TATCTGCTACGCAACCCTCAGTCCGGTTCAATCTTAGACTGGGAATGAACTCCGTAT
Found at i:11690391 original size:26 final size:26
Alignment explanation
Indices: 11690353--11690405 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11690343 CTGGTTCAAT
11690353 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11690379 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
11690405 C
1 C
11690406 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11690603 original size:98 final size:98
Alignment explanation
Indices: 11690420--11690606 Score: 239
Period size: 98 Copynumber: 1.9 Consensus size: 98
11690410 GCCAACCCAT
**
11690420 GAAACGAGCGTGCGGGCGTTCAGCCGGTCAGAGAGGCAAAATGCACAAGCCAAGGACCGGCCCAG
1 GAAACGAGCGTGCGGGCACTCAGCCGGTCAGAGAGGCAAAATGCACAAGCCAAGGACCGGCCCAG
* * *
11690485 TCCCCCTTGCATGCTGTCGATCCTGTTGCACAC
66 TCCCCCCTACATGCTATCGATCCTGTTGCACAC
* * * * * ** * *
11690518 GAAACGAGCGTGCGGGCACTCAGTCGGTCGGATAGGTAGAATGCACAAGCCGGGGATCGGCCCGG
1 GAAACGAGCGTGCGGGCACTCAGCCGGTCAGAGAGGCAAAATGCACAAGCCAAGGACCGGCCCAG
*
11690583 TCCCCCCTACGTGCTATCGATCCT
66 TCCCCCCTACATGCTATCGATCCT
11690607 ACTGTCGCAA
Statistics
Matches: 74, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
98 74 1.00
ACGTcount: A:0.22, C:0.31, G:0.31, T:0.16
Consensus pattern (98 bp):
GAAACGAGCGTGCGGGCACTCAGCCGGTCAGAGAGGCAAAATGCACAAGCCAAGGACCGGCCCAG
TCCCCCCTACATGCTATCGATCCTGTTGCACAC
Found at i:11690671 original size:26 final size:26
Alignment explanation
Indices: 11690635--11690687 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11690625 CCGGTCTGAT
11690635 CTTAGACTGGGGATGAACTACATATG
1 CTTAGACTGGGGATGAACTACATATG
*
11690661 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTACATATG
11690687 C
1 C
11690688 CTAGGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTACATATG
Found at i:11691043 original size:26 final size:26
Alignment explanation
Indices: 11691014--11691066 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11691004 CCGATCGGAT
*
11691014 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
11691040 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
11691066 C
1 C
11691067 CTAAACCTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:11691215 original size:197 final size:195
Alignment explanation
Indices: 11690843--11691432 Score: 774
Period size: 196 Copynumber: 3.0 Consensus size: 195
11690833 TCTGACTGGG
* *
11690843 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCCG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGT-CGGGCGCTCAG
** * * * *
11690908 TCGACCAGAGAGGCAGAATGCACAAGCTGGGGATC-AGCCCAATCCCTCCTGCGTGCTGTCAATC
65 TCGACTGGAGAGGCAGAATGCACAAGCTGGGGATCGA-CCCGATCCCCCCTGCATGCTGTCGATC
*
11690972 CTGCTGCTGGTCCTGCTACCGCAACCCTCGGTCCGATCGGATCTTAGACTGGGAATGAACTCCGT
129 CTGCTGCTGGTCCTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGT
11691037 AT
194 AT
* * * * *
11691039 GCTTAGACATGGAATGAACTCCATATGCCTAAACCTACCCATGAAATGAGTGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGT-CGGGCGCTCAG
* * * * * *
11691104 CCGACTGGAGAGGAAGAATGCGCAAGCCGGGGACCGACCCGATCCTCCCCTACATGCTGTCGATC
65 TCGACTGGAGAGGCAGAATGCACAAGCTGGGGATCGACCCGATCC-CCCCTGCATGCTGTCGATC
* * * * *
11691169 CTGTTACTGGTCCTGCTACCGCAACCCTCAGT-CTAGTCCGATCTTAGATTGGGAATGAACTCCG
129 CTGCTGCTGGTCCTGCTACCGCAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCG
11691233 TAT
193 TAT
* * *
11691236 GCTTAGACATGGATTGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGT-GAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTCG-GGCGCTCAG
* * *
11691300 TCGA-TCGGAGAGGCAGAACGCACAAGCTGGGGATCGACCCGATCCCCCCTGCATGATGCCGATC
65 TCGACT-GGAGAGGCAGAATGCACAAGCTGGGGATCGACCCGATCCCCCCTGCATGCTGTCGATC
* * * *
11691364 ATGCTGCTGGTCTTGCTACCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCAT
129 CTGCTGCTGGTCCTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGT
11691429 AT
194 AT
11691431 GC
1 GC
11691433 CTAAGCCAAC
Statistics
Matches: 336, Mismatches: 52, Indels: 13
0.84 0.13 0.03
Matches are distributed among these distances:
195 75 0.22
196 142 0.42
197 119 0.35
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.20
Consensus pattern (195 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTCGGGCGCTCAGT
CGACTGGAGAGGCAGAATGCACAAGCTGGGGATCGACCCGATCCCCCCTGCATGCTGTCGATCCT
GCTGCTGGTCCTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:11692873 original size:158 final size:154
Alignment explanation
Indices: 11692471--11692900 Score: 380
Period size: 159 Copynumber: 2.7 Consensus size: 154
11692461 AACTCCGTAT
* * *
11692471 GCTTAGACATGGAATGAACTCCTTATGCCTAAACCAACACATGAAACGAGTGTGCAGGCGCTCAG
1 GCTTAG-CATGGAATGAACTCCCTATGCCTAAACCAAC-CATGAAACGAGCGTGCGGGCGCTCAG
* ** * * *
11692536 CCAGTCGGAGAGGCAGAATGCGCAAGCTGGGGATTAGCCCGATCTGCCCCTGCGTATTGTCGATC
64 CCGGTCGGAGAGGCAGAATGCGCAAGC-GGGGATCGGCCCGGTC--CCCCTGCGTACTGCCGATC
** * *
11692601 CTGCTACTGCAACCCTCGGTCCGATCTGA
126 CTGCTACCACAACCCTCAGTCCGAGCTGA
* * *** * * *
11692630 TCTTAG-ACTGGGAATGAACTCCGTATGTAAAAATCAACCCATGAAACGAGCGTGTGGGCGCTGA
1 GCTTAGCA-T-GGAATGAACTCCCTATGCCTAAACCAA-CCATGAAACGAGCGTGCGGGCGCTCA
** * * * *
11692694 GCCGACCGAAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTTTGCGTGCTGCCGGT
63 GCCGGTCGGAGAGGCAGAATGCGCAAG-CGGGGATCGGCCCGGTCCCCC--TGCGTACTGCCGAT
* *
11692759 -CTCGCTGCCACAACCCTCAGTCC-AGCTAGG
125 CCT-GCTACCACAACCCTCAGTCCGAGCT-GA
* * * *
11692789 GCTTAGCATGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACGGGCGTGCGGGCACTCAGC
1 GCTTAGCATGGAATGAACTCCCTATGCCTAAACCAACC-ATGAAACGAGCGTGCGGGCGCTCAGC
* * *
11692854 CGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCAGTCCCCC
65 CGGTCGGAGAGGCAGAATGCGCAAG-CGGGGATCGGCCCGGTCCCCC
11692901 CTACGTGCTA
Statistics
Matches: 213, Mismatches: 48, Indels: 21
0.76 0.17 0.07
Matches are distributed among these distances:
157 7 0.03
158 87 0.41
159 116 0.54
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (154 bp):
GCTTAGCATGGAATGAACTCCCTATGCCTAAACCAACCATGAAACGAGCGTGCGGGCGCTCAGCC
GGTCGGAGAGGCAGAATGCGCAAGCGGGGATCGGCCCGGTCCCCCTGCGTACTGCCGATCCTGCT
ACCACAACCCTCAGTCCGAGCTGA
Found at i:11692960 original size:158 final size:156
Alignment explanation
Indices: 11692472--11692973 Score: 424
Period size: 158 Copynumber: 3.2 Consensus size: 156
11692462 ACTCCGTATG
* * *
11692472 CTTAGACATGGAATGAACTCCTTATGCCTAAACCAACACATGAAACGAGTGTGCAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAACCAAC-CATGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * * **
11692537 CAGTCGGAGAGGCAGAATGCGCAAGCTGGGGATTAGCCCGATCTGCCCCTGCGT-ATTGTCGATC
65 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCAG-TC-CCCCCTGCGTGCTACT-GATC
*
11692601 CTGCT-ACTGCAACCCTCGGTCCGATCTGAT
127 CTGCTGAC-GCAACCCTCGGTCCGATCTAAT
*** * * *
11692631 CTTAGAC-TGGGAATGAACTCCGTATGTAAAAATCAACCCATGAAACGAGCGTGTGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAACCAA-CCATGAAACGAGCGTGCGGGCGCTCAG
** * * * * * * * *
11692695 CCGACCGAAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTTTGCGTGCTGCCGGT-
64 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG-CCAGTCCCCC-CTGCGTGCTACTGATC
* * * * **
11692759 CTCGCTGCCACAACCCTCAGTCC-AGCTAGGG
127 CT-GCTGACGCAACCCTCGGTCCGATCTA-AT
* * * * *
11692790 CTTAG-CATGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACGGGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAACCAACC-ATGAAACGAGCGTGCGGGCGCTCAGC
* *
11692854 CGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCAGTCCCCCCTACGTGCTACTGATCCT
65 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC-CAGTCCCCCCTGCGTGCTACTGATCCT
* * *
11692919 ACTGTCGCAACCCTCGGTCCGATCCAAT
129 GCTGACGCAACCCTCGGTCCGATCTAAT
11692947 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
11692974 TTAGACAGGG
Statistics
Matches: 263, Mismatches: 65, Indels: 31
0.73 0.18 0.09
Matches are distributed among these distances:
157 35 0.13
158 113 0.43
159 109 0.41
160 6 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCATGAAACGAGCGTGCGGGCGCTCAGCC
GGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCAGTCCCCCCTGCGTGCTACTGATCCTGC
TGACGCAACCCTCGGTCCGATCTAAT
Found at i:11692976 original size:26 final size:26
Alignment explanation
Indices: 11692947--11692999 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11692937 CCGATCCAAT
*
11692947 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
11692973 CTTAGACAGGGGATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
11692999 C
1 C
11693000 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:11693409 original size:171 final size:171
Alignment explanation
Indices: 11693109--11693416 Score: 472
Period size: 171 Copynumber: 1.8 Consensus size: 171
11693099 ATCCAGCTGT
*
11693109 CGATCCTGCTACCGATCCTGCTGCCACAACCCTCGATCCGGCCGGGGCTTAGACATGGAGTGAAC
1 CGATCCTGCTACCGATCCTGCTGCCACAACCCTCGATCCGGCCGGGGCTTAGACATGGAATGAAC
* *
11693174 TCCGTATGCCTAAGCTAACCCACAAAATAAGCATGCGGGCGCTCAACCGGTCCGAGAAGCAGAAT
66 TCCGTATGCCTAAGCCAACCCACAAAACAAGCATGCGGGCGCTCAACCGGTCCGAGAAGCAGAAT
11693239 GCGCAAGTCGAAGATCAACCCGGTCCCCCTCTACGTGCTAC
131 GCGCAAGTCGAAGATCAACCCGGTCCCCCTCTACGTGCTAC
* * * **
11693280 CGATCCTGCTATCGGTCCTGCTGCCACAACCCTCGGTCCGGCTTGGGCTTAGACATGGAATGAAC
1 CGATCCTGCTACCGATCCTGCTGCCACAACCCTCGATCCGGCCGGGGCTTAGACATGGAATGAAC
* * * * * * * *
11693345 TCTGTATGCCTAAGCCAACTCACAAAACGAGCGTGCGGGCGCTTAGCCGGTCGGAGAGGCAGAAT
66 TCCGTATGCCTAAGCCAACCCACAAAACAAGCATGCGGGCGCTCAACCGGTCCGAGAAGCAGAAT
11693410 GCGCAAG
131 GCGCAAG
11693417 CCGGGGATCA
Statistics
Matches: 121, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
171 121 1.00
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (171 bp):
CGATCCTGCTACCGATCCTGCTGCCACAACCCTCGATCCGGCCGGGGCTTAGACATGGAATGAAC
TCCGTATGCCTAAGCCAACCCACAAAACAAGCATGCGGGCGCTCAACCGGTCCGAGAAGCAGAAT
GCGCAAGTCGAAGATCAACCCGGTCCCCCTCTACGTGCTAC
Found at i:11693870 original size:159 final size:158
Alignment explanation
Indices: 11693522--11693958 Score: 436
Period size: 159 Copynumber: 2.8 Consensus size: 158
11693512 AACTCTATAT
* * * * * * * *
11693522 GCTTAGACATGGAGTGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGAGCGTTCAG
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAA
* * *
11693587 CCGACCGGAGAGGCAGAATGCATAAGTCGGGGATCAGCTCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCAGCCCAGTCCCCCCTGCGTGCTGTCGATCC
* **
11693652 TGCTGCTGCAACCCTCGGTCTGATCCAA
131 CGCTGCCACAACCCTCGGTCTGATCCAA
* * * *
11693680 TCTT--ATACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTG
1 GCTTAGATA-T-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTC
* * * *
11693743 AATCGGCCGGAGAGGCATAATGCGCAAGTCGGGGATC-GACCCAGTCCCCCTCTGCGTGCTGTCG
64 AACCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCAG-CCCAGTCCCCC-CTGCGTGCTGTCG
* ***
11693807 GTCCCGCTGCCACAACCCTCGGTCTGA-CTGGG
127 ATCCCGCTGCCACAACCCTCGGTCTGATC-CAA
* * * * *
11693839 GCTTAGATATGGAATGAACTCCCTATGCCTAACCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAA
* * ** ** * *
11693904 CCGACTGGAGAGGTAGAATGCGTAAACCGGGGATC-G-GCGGTCCCCCCTGCGTGCT
66 CCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCAGCCCAGTCCCCCCTGCGTGCT
11693959 ATCGGTCCTG
Statistics
Matches: 227, Mismatches: 45, Indels: 16
0.79 0.16 0.06
Matches are distributed among these distances:
156 11 0.05
157 10 0.04
158 88 0.39
159 114 0.50
160 1 0.00
161 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAA
CCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCAGCCCAGTCCCCCCTGCGTGCTGTCGATCC
CGCTGCCACAACCCTCGGTCTGATCCAA
Found at i:11694649 original size:11 final size:11
Alignment explanation
Indices: 11694629--11694667 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
11694619 CCGTTAGGCT
11694629 CTCCGGTGATG
1 CTCCGGTGATG
*
11694640 CTCCGATGATG
1 CTCCGGTGATG
*
11694651 CTCCGGCGATG
1 CTCCGGTGATG
11694662 CTCCGG
1 CTCCGG
11694668 CAATGGTGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.10, C:0.33, G:0.33, T:0.23
Consensus pattern (11 bp):
CTCCGGTGATG
Found at i:11695162 original size:159 final size:158
Alignment explanation
Indices: 11694757--11695177 Score: 409
Period size: 159 Copynumber: 2.6 Consensus size: 158
11694747 ACTGGGAATG
* * *
11694757 AACTCCGTATGCTTAAACATGGAATGAACTTCGTATGCCTAAGCCAACCAACGAAACGAGCGTGC
1 AACTCCG-A-GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-
* * * * *
11694822 CA-GCACTCAGCCGGCCAGAGAGGCAGAATGCACAAGCTAGGGATCAGCTCAGTCCCCCCCTGCG
63 CAGGCACTCAGCC-GCCGGAGAGGCATAATGCGCAAGCCAAGGATCAGCTCAGTCCCCCCCTGCG
** * ** *
11694886 TGCTATTGATCCTGCTACTGCAACCCTCAGTC
127 TGCTACCGATCCCGCTACCACAACCCTCAATC
*** * * * *
11694918 TGGTCCGATCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTG-T
1 AACTCCGAGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCA
* * * * * * * * *
11694981 GAACACTGAACCGACCGAAGAGGCATAATGTGCAAGCCAAGGATCGGCTCGGTCCCCCTCTGTGT
65 G-GCACTCAGCCG-CCGGAGAGGCATAATGCGCAAGCCAAGGATCAGCTCAGTCCCCCCCTGCGT
*
11695046 GCTACCGATCCCGCTGCCACAACCCTCAATCC
128 GCTACCGATCCCGCTACCACAACCCTCAAT-C
* * * *
11695078 AACT-GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAG
1 AACTCCGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAG
*
11695142 GCGCTCAGCCAGCCGGAGAGGCATAATGCGCAAGCC
66 GCACTCAGCC-GCCGGAGAGGCATAATGCGCAAGCC
11695178 GAGTGTCATA
Statistics
Matches: 204, Mismatches: 48, Indels: 18
0.76 0.18 0.07
Matches are distributed among these distances:
158 2 0.01
159 192 0.94
160 6 0.03
161 4 0.02
ACGTcount: A:0.27, C:0.31, G:0.24, T:0.17
Consensus pattern (158 bp):
AACTCCGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAG
GCACTCAGCCGCCGGAGAGGCATAATGCGCAAGCCAAGGATCAGCTCAGTCCCCCCCTGCGTGCT
ACCGATCCCGCTACCACAACCCTCAATC
Found at i:11700599 original size:26 final size:26
Alignment explanation
Indices: 11700570--11700622 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11700560 CCGCTCCCAT
11700570 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11700596 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11700622 C
1 C
11700623 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11700881 original size:157 final size:156
Alignment explanation
Indices: 11700595--11701106 Score: 473
Period size: 157 Copynumber: 3.2 Consensus size: 156
11700585 AACTCCGTAT
* * *
11700595 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCTTACGGGTGCT-G
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGTGCTAG
* * * * *
11700658 CCTGCCATAGAGGCATAATGCGTAAGCCTG-GGATCGGCCCGATCCCTCT-CTGTGTGTTGTCGA
65 CCGGCCAGAGAGGCATAATGCATAAGCC-GAGGATCGGCCCGGTCCCTCTAC-GT-T-CTGTCGA
11700721 TCCTGCTGCCACAACCCTCGGTCCGACTGAG
126 TCCTGCTGCCACAACCCTCGGTCCGACTGAG
*
11700752 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGTGCT-AG
* * * * * * *
11700817 CCGGCCGGAGAGGTAGAATGCACAAGCCGAGTATCGGCTCGGTGCCC-CTACGTTCTATCGATCC
65 CCGGCCAGAGAGGCATAATGCATAAGCCGAGGATCGGCCCGGT-CCCTCTACGTTCTGTCGATCC
* ** * *
11700881 TACTGCTTCAACCCTCGATCCGGTCTGA-
129 TGCTGCCACAACCCTCGGTCC-GACTGAG
* * * * * * * * **
11700909 TCTTAGACTTTGAATGAACTCCGTATGCCTAAGTCAACTCACGAAACAAGCGTTCGGGCACTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGTGCT-AG
* * * * * *
11700974 CCGACCAGAAAGGCATAATACATAAGCC-AGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGGT
65 CCGGCCAGAGAGGCATAATGCATAAGCCGA-GGATCGGCCCGGT--CCCTCTACGTTCTGTCGAT
* *
11701038 CCCGCTGCCACAACCCTCGGTCC-AGCTGGG
127 CCTGCTGCCACAACCCTCGGTCCGA-CTGAG
* * *
11701068 GCTTAGACATAGAATAAACTCCCTATGCCTAAGCCAACC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
11701107 TACAAAATGG
Statistics
Matches: 283, Mismatches: 60, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
156 1 0.00
157 166 0.59
158 14 0.05
159 98 0.35
160 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGTGCTAGC
CGGCCAGAGAGGCATAATGCATAAGCCGAGGATCGGCCCGGTCCCTCTACGTTCTGTCGATCCTG
CTGCCACAACCCTCGGTCCGACTGAG
Found at i:11701415 original size:11 final size:11
Alignment explanation
Indices: 11701401--11701426 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
11701391 GCTCTCCGGT
11701401 GATGCTCCGAC
1 GATGCTCCGAC
11701412 GATGCTCCGAC
1 GATGCTCCGAC
11701423 GATG
1 GATG
11701427 GTGCCTCGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (11 bp):
GATGCTCCGAC
Found at i:11701889 original size:26 final size:26
Alignment explanation
Indices: 11701851--11701903 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11701841 TCGGTCTGAT
11701851 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11701877 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
11701903 C
1 C
11701904 CAAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11702219 original size:159 final size:157
Alignment explanation
Indices: 11701876--11702638 Score: 581
Period size: 159 Copynumber: 4.8 Consensus size: 157
11701866 AACTCCGTAT
* * * * * * * *
11701876 GCTTAGACATGGAATGAACTTCGTATGCCAAAGCCAACTCATGAAATGAACGTGCGGCCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * *** * * *
11701941 CCGACCGAAAAGGTAGAATGCGCAAGCCGAGGATTAACCCGATCCCCCCTGCATGCTGTTGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
* * *
11702006 TACTGTCGCAACCCTCAGTCCGATCTGA
131 TGCTGCCACAACCCTCAGTCCGA-CTGA
* * * * * *
11702034 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGACCATGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * * * *
11702098 GCCGACCGGAGAGGCATAATGCGTAAGCC-AGGGATCGGCCCGATCCCCCTCTGCCTGCTGTCGG
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGGCCCGATCCCCC-CTACGTGCTGTCGA
*
11702162 T-CTCGCTGCCACAACCCTCAGTCCGACTGGG
128 TCCT-GCTGCCACAACCCTCAGTCCGACT-GA
* * *
11702193 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACTAAACGAGCGTGCGGGC-ATACA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCT-CA
* ** * * * * * *
11702257 GTCGGTCGGAAAGGCAGAATGTGCAAGTCGAGGACCGGCTCGGTCCCCCCTACGTGCTGTCGATC
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATC
** *
11702322 CTGCTGCCGTAACCCT-TGATCCGGTA-TGA
130 CTGCTGCCACAACCCTCAG-TCC-G-ACTGA
* * * * * * * *
11702351 TCTTAGAC-TGGGAATGAACTACGTATGCCTAAGTCAACCCATGAAACGAGCTTTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * * * * * * * *
11702415 GCC-AGTCGGAGAGGCATAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCTCTAAGTGCTTTCGG
65 GCCGA-CCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCC-CTACGTGCTGTCGA
* * *
11702479 TCCTGCTGCCACAACCCTCGGTCCGGCTGGG
128 TCCTGCTGCCACAACCCTCAGTCCGACT-GA
* * * * * * *
11702510 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAATGGGCATACGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * ** * * * * *
11702575 CCGGCCTGAGAGGCAGAATATGCAAGTC-AGGGATCGACCCGGTCCTCCTTACGTGCTGTCGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGGCCCGATCCCCCCTACGTGCTGTCGATC
11702639 TTACTGCTGG
Statistics
Matches: 476, Mismatches: 107, Indels: 44
0.76 0.17 0.07
Matches are distributed among these distances:
157 4 0.01
158 225 0.47
159 242 0.51
160 5 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
TGCTGCCACAACCCTCAGTCCGACTGA
Found at i:11702376 original size:158 final size:159
Alignment explanation
Indices: 11701876--11702555 Score: 508
Period size: 158 Copynumber: 4.3 Consensus size: 159
11701866 AACTCCGTAT
* * * * * * *
11701876 GCTTAGACATGGAATGAACTTCGTATGCCAAAGCCAACTCATGAAATGAACGTGCGGCCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * **** * * *
11701941 CC-GACCGAAAAGGTAGAATGCGCAAGCCGAGGATTAACCCGATCCCCC-CTGCA-TGCTGTTGA
66 CCAG-TCGGAAAGGCAGAATGCGCAAGTCGAGGACCGGCCCGGTCCCCCTCT-AAGTGCTGTCGA
* * * *
11702003 TCCTACTGTCGCAACCCTC-AGTCCGATCT-GA
129 TCCTGCTGCCACAACCCTCGA-TCCG-GCTGGA
* * * * * * ** *
11702034 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGACCATGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
* * * * * * * ***
11702098 GCC-GACCGGAGAGGCATAATGCGTAAG-CCAGGGATCGGCCCGATCCCCCTCTGCCTGCTGTCG
65 GCCAG-TCGGAAAGGCAGAATGCGCAAGTCGA-GGACCGGCCCGGTCCCCCTCTAAGTGCTGTCG
* * *
11702161 GT-CTCGCTGCCACAACCCTC-AGTCCGACTGGG
128 ATCCT-GCTGCCACAACCCTCGA-TCCGGCTGGA
11702193 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACT-AAACGAGCGTGCGGGCA-TAC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-TGAAACGAGCGTGCGGGCACT-C
* * * * *
11702256 AGTCGGTCGGAAAGGCAGAATGTGCAAGTCGAGGACCGGCTCGGTCCCCC-CTACGTGCTGTCGA
64 AGCCAGTCGGAAAGGCAGAATGCGCAAGTCGAGGACCGGCCCGGTCCCCCTCTAAGTGCTGTCGA
** * *
11702320 TCCTGCTGCCGTAACCCTTGATCCGG-TATGA
129 TCCTGCTGCCACAACCCTCGATCCGGCT-GGA
* * * * * *
11702351 TCTTAGAC-TGGGAATGAACTACGTATGCCTAAGTCAACCCATGAAACGAGCTTTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
* * * * * * *
11702415 GCCAGTCGGAGAGGCATAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCTCTAAGTGCTTTCGGT
65 GCCAGTCGGAAAGGCAGAATGCGCAAGTCGAGGACCGGCCCGGTCCCCCTCTAAGTGCTGTCGAT
* *
11702480 CCTGCTGCCACAACCCTCGGTCCGGCTGGG
130 CCTGCTGCCACAACCCTCGATCCGGCTGGA
* *
11702510 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
11702556 TGGGCATACG
Statistics
Matches: 414, Mismatches: 88, Indels: 39
0.77 0.16 0.07
Matches are distributed among these distances:
157 6 0.01
158 212 0.51
159 190 0.46
160 6 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
CCAGTCGGAAAGGCAGAATGCGCAAGTCGAGGACCGGCCCGGTCCCCCTCTAAGTGCTGTCGATC
CTGCTGCCACAACCCTCGATCCGGCTGGA
Found at i:11702417 original size:317 final size:316
Alignment explanation
Indices: 11701876--11702555 Score: 841
Period size: 317 Copynumber: 2.1 Consensus size: 316
11701866 AACTCCGTAT
* * * *
11701876 GCTTAGACATGGAATGAACTTCGTATGCCAAAGCCAACTCATGAAATGAACGTGCGGCCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGG-CGCTCAG
* ** * *
11701941 CCGACCGAAAAGGTAGAATGCGCAAGCCGAGGATTAACCCGATCCCCCCTGCATGCTGTTGATCC
65 CCGACCGAAAAGGCAGAATGCGCAAGCCGAGGACCAACCCGATCCCCCCTACATGCTGTCGATCC
* *
11702006 TACTGTCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
130 TACTGCCGCAACCCTCAGTCCGATATGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
**
11702071 CCCACGAAACGACCATGCGGGTGCTGAGCC-GACCGGAGAGGCATAATGCGTAAGCCAGGGATCG
195 CCCACGAAACGACCATGCGGGCACTGAGCCAG-CCGGAGAGGCATAATGCGTAAGCCAGGGATCG
**
11702135 GCCCGATCCCCCTCTGCCTGCTGTCGGT-CTCGCTGCCACAACCCTCAGTCCGACTGGG
259 GCCCGATCCCCCTCTAACTGCTGTCGGTCCT-GCTGCCACAACCCTCAGTCCGACTGGG
*
11702193 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACT-AAACGAGCGTGCGG-GCATAC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-TGAAACGAACGTGCGGCGC-T-C
* ** * * * ** * * *
11702256 AGTCGGTCGGAAAGGCAGAATGTGCAAGTCGAGGACCGGCTCGGTCCCCCCTACGTGCTGTCGAT
63 AGCCGACCGAAAAGGCAGAATGCGCAAGCCGAGGACCAACCCGATCCCCCCTACATGCTGTCGAT
* * * *
11702321 CCTGCTGCCGTAACCCT-TGATCCGGTATGATCTTAGACTGGGAATGAACTAC-GTATGCCTAAG
128 CCTACTGCCGCAACCCTCAG-TCCGATATGATCTTAGACTGGGAATGAACT-CTGTATGCCTAAG
* * * * * * *
11702384 TCAACCCATGAAACGAGCTTTCGGGCACTGAGCCAGTCGGAGAGGCATAATGCGTAAGTCGGGGA
191 TCAACCCACGAAACGACCATGCGGGCACTGAGCCAGCCGGAGAGGCATAATGCGTAAGCCAGGGA
* * * * *
11702449 TCGGCCCGGTCCCCCTCTAAGTGCTTTCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGG
256 TCGGCCCGATCCCCCTCTAACTGCTGTCGGTCCTGCTGCCACAACCCTCAGTCCGACTGGG
* *
11702510 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
11702556 TGGGCATACG
Statistics
Matches: 310, Mismatches: 45, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
315 2 0.01
316 2 0.01
317 301 0.97
318 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGCGCTCAGC
CGACCGAAAAGGCAGAATGCGCAAGCCGAGGACCAACCCGATCCCCCCTACATGCTGTCGATCCT
ACTGCCGCAACCCTCAGTCCGATATGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
CCACGAAACGACCATGCGGGCACTGAGCCAGCCGGAGAGGCATAATGCGTAAGCCAGGGATCGGC
CCGATCCCCCTCTAACTGCTGTCGGTCCTGCTGCCACAACCCTCAGTCCGACTGGG
Found at i:11702591 original size:317 final size:317
Alignment explanation
Indices: 11701977--11702638 Score: 816
Period size: 317 Copynumber: 2.1 Consensus size: 317
11701967 CCGAGGATTA
* * * * * * * * * *
11701977 ACCCGATCCCCCCTGCATGCTGTTGATCCTACTGTCGCAACCC-TCAGTCCGATCTGATCTTAGA
1 ACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGTAACCCTTGA-TCCGGTATGATCTTAGA
**
11702041 CTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGACCATGCGGGTGCTGAGCCGACCG
65 CTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGACCATGCGGGCACTGAGCCGACCG
**
11702106 GAGAGGCATAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTCTGCCTGCTGTCGGTCTCGCTGC
130 GAGAGGCATAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTCTAACTGCTGTCGGTCTCGCTGC
* **
11702171 CACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACT
195 CACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAG
* * * * *
11702236 AAACGAGCGTGCGGGCATACAGTCGGTCGGAAAGGCAGAATGTGCAAGTC-GAGGACCG
260 AAACGAGCATACGGGCATACAGCCGGCCGGAAAGGCAGAATATGCAAGTCAG-GGACCG
* *
11702294 GCTCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGTAACCCTTGATCCGGTATGATCTTAGAC
1 ACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGTAACCCTTGATCCGGTATGATCTTAGAC
* * * * *
11702359 TGGGAATGAACTAC-GTATGCCTAAGTCAACCCATGAAACGAGCTTTCGGGCACTGAGCC-AGTC
66 TGGGAATGAACT-CTGTATGCCTAAGTCAACCCACGAAACGACCATGCGGGCACTGAGCCGA-CC
* * * * *
11702422 GGAGAGGCATAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCTCTAAGTGCTTTCGGTC-CTGCT
129 GGAGAGGCATAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTCTAACTGCTGTCGGTCTC-GCT
* *
11702486 GCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
193 GCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * * *
11702551 AGAAATGGGCATACGGGTGC-T-TAGCCGGCCTGAGAGGCAGAATATGCAAGTCAGGGATCG
258 AGAAACGAGCATAC-GG-GCATACAGCCGGCCGGAAAGGCAGAATATGCAAGTCAGGGACCG
* *
11702611 ACCCGGTCCTCCTTACGTGCTGTCGATC
1 ACCCGGTCCCCCCTACGTGCTGTCGATC
11702639 TTACTGCTGG
Statistics
Matches: 292, Mismatches: 46, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
316 2 0.01
317 281 0.96
318 7 0.02
319 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (317 bp):
ACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGTAACCCTTGATCCGGTATGATCTTAGAC
TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGACCATGCGGGCACTGAGCCGACCGG
AGAGGCATAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTCTAACTGCTGTCGGTCTCGCTGCC
ACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGA
AACGAGCATACGGGCATACAGCCGGCCGGAAAGGCAGAATATGCAAGTCAGGGACCG
Found at i:11703555 original size:850 final size:827
Alignment explanation
Indices: 11701533--11703780 Score: 2342
Period size: 830 Copynumber: 2.7 Consensus size: 827
11701523 TTAGACATAA
* * * * *
11701533 AATGAACT-CTGTATGCCTAAGCCAACGCACGAAATGAGCGTGCGGGCGCTC-AACC-GATCGGA
1 AATGAACTAC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCAC-CGAGCCAG-TCGGA
* * ** * *
11701595 GAGGCAGAATGCGCAAGTCGGGGATC-GACCCAAG-CCAACTC----TGCGTGCTACCGGTCCAG
63 GAGGCATAATGCGCAAGTCGGGGATCAG-CCC-GGTCCCCCTCTAAGTGCTTGCTACCGGTCCTG
* *
11701654 CTGTCACAACCCTCGGTCCGACTGGGGTTTAGACATGGAATGAACTCCGTATG-C-AAGCCAACC
126 CTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
11701717 CATGAAATGAGCGTACGGGCGCTCAGTCGACTGGAGAGGTAGAATGCGCAAGTCGAGGATCAGCC
191 CATGAAATGAGCGTACGGGCGCTCAGCCGAC-CGAGAGGCAGAATGCGCAAGTCGGGGATCAGCC
* * * * * * *
11701782 CGATCCCCCCCTGCGTGCTACCCGATCCTACTACTGGTCCTGTTGTCATAACGCTCGGTTCGGTC
255 CGGT-CCCTCCTGCGTGCT-GCCGATCCTACTACTGGTCCTGCTGTCACAACCCTCGGTCCGGTC
* * *
11701847 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCAAAGCCA
318 TGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * * **
11701912 ACTCATGAAATGAACGTGCGGCCGCTCAGCCGACCGAAAAGGTAGAATGCGCAAGCCGAGGATTA
383 ACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGTAGAATGCGCAAGCCGAGGATCG
* * * *
11701977 ACCCGATCCCCCCTGCATGCTGTTGATCCTACTG-TCGCAACCCTCAGTCCGATCTGATCTTAGA
448 ACCTGATCCCCCCTGCGTGCTGTCGATCCTACTGCT-GCAACCCTCGGTCCGATCTGATCTTAGA
**
11702041 CTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGACCATGCGGGTGCTGAGCCGACCG
512 CTGGGAATGAACTC-GTATGCCTAAGTCAACCCACGAAACGA-CATGCGGGCACTGAGCCGACCG
** * * * * *
11702106 GAGAGGCATAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTCTGCCTGCTGTCGGTCTCGCTGC
575 GAGAGGCATAATAAGCAAGCCAGGGATCGGCCAGATCCCCCTCTACCTGCTGTCAGTCCCGCTGC
*
11702171 CACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACT
640 CACAACCCTCAGTCCGACTGGGGCTCAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACT
* * * * * * *
11702236 AAACGAGCGTGCGGGCATACAGTCGGTCGGAAAGGCAGAATGTGCAAGTCGAGGACCGGCTCGGT
705 AAACGAGCGTGCGGGCATACAGACCGACCGAAAGACAGAATGCGCAAGTCGAGGACCGGATCGGT
* * ** *
11702301 CCCCCCTACGTGCTGTCGATCCTGCTGCCGTAACCCTTGATCCGGTATGATCTTAGACTGGG
770 CCCCCCTACGTGCTGTCGATCCTACTACCCCAACCCTCGAT-C--TATGA-CTTAGACTGGG
* * * *
11702363 AATGAACTACGTATGCCTAAGTCAACCCATGAAACGAGCTTTCGGGCACTGAGCCAGTCGGAGAG
1 AATGAACTACGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACCGAGCCAGTCGGAGAG
* *
11702428 GCATAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCTCTAAGTGCTT--T--CGGTCCTGCTGCC
66 GCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTAAGTGCTTGCTACCGGTCCTGCTGCC
* * *
11702489 ACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGA
131 ACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGA
* * * * * ** *
11702554 AATGGGCATACGGGTGCTTAGCCGGCCTGAGAGGCAGAATATGCAAGTCAGGGATC-GACCCGGT
196 AATGAGCGTACGGGCGCTCAGCCGACC-GAGAGGCAGAATGCGCAAGTCGGGGATCAG-CCCGGT
* * * * * * *
11702618 -CCTCCTTACGTGCTGTCGATCTTACTGCTGGTCCTGCGGCCCCAACCCTCGGTCCGGTCTGATC
259 CCCTCC-TGCGTGCTGCCGATCCTACTACTGGTCCTGCTGTCACAACCCTCGGTCCGGTCTGATC
* *
11702682 TTAGACTAGGAATGAACTCCATATACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
323 TTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * *
11702747 CGAAACGAGCGTGCGGGCGCTCAGTCGACGGGAGAGGCAAAATGCGCAAGCCGAGGATCGATCTG
388 CGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGTAGAATGCGCAAGCCGAGGATCGACCTG
* * * * * * * *
11702812 GTCCCCCCTGCGTGCTGTCAATCCTGCTGCTACAACCCTTGGTCTGGTCTGATCTTAGACTAGGA
453 ATCCCCCCTGCGTGCTGTCGATCCTACTGCTGCAACCCTCGGTCCGATCTGATCTTAGACTGGGA
* * * * **
11702877 ATGAACTACGTAT-CCGTAAGCCAACCCATGAAATGA-ATGTTCGGGCACTGAGCTGGTCGGAGA
518 ATGAACT-CGTATGCC-TAAGTCAACCCACGAAACGACATG--CGGGCACTGAGCCGACCGGAGA
* * **
11702940 GGCATAATAAGCAAGTCAGGGATGGGCCTAG-TCCCCCCCTCTATGTGCTGTCAGTCCCGCTGCC
579 GGCATAATAAGCAAGCCAGGGATCGGCC-AGAT--CCCCCTCTACCTGCTGTCAGTCCCGCTGCC
*
11703004 ACAACCCTCGGTCCGACTGGGGCTCAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCA-TG
641 ACAACCCTCAGTCCGACTGGGGCTCAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACT-
* * * * *
11703067 AAACGGGCGTGTGGGCACT-CA-ACCGACCGAAGAGACAGAATGCGTAAGTCGGGGATC-GATCG
705 AAACGAGCGTGCGGGCA-TACAGACCGACCGAA-AGACAGAATGCGCAAGTCGAGGACCGGATC-
* *
11703129 GGTCCCCTCTGCGTGCTGTCGATCCTACTACCCCAACCCTCGAT-TATG-CTTAGACTGGG
767 GGTCCCCCCTACGTGCTGTCGATCCTACTACCCCAACCCTCGATCTATGACTTAGACTGGG
* * *
11703188 GATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGTGCTCAACCG-GCCAGAGA
1 AATGAACTACGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GG-G--C-ACCGAGCC----A
* * * **
11703252 GGCTGGTCGGAGAGGCGTAATGTGCAAG-CTGGGGATCAGCCCGGTCCTCCTCTTCGTGCTGCCG
57 -----GTCGGAGAGGCATAATGCGCAAGTC-GGGGATCAGCCCGGTCCCCCTCTAAGTGCT----
* * *
11703316 ATCCCGCTACCAGTCCTGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTT
112 -T---GCTACCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTC
* * *
11703381 CGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGACCGAAGAGGCAGAATGC
173 CGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGCCGACCG-AGAGGCAGAATGC
* * * ** * **
11703446 GTAAGCCGGGGATCAGCCCGGTCCCTCCTGCATGCTGCCGATCCTGTTACTGGTCCTACTGTTGC
237 GCAAGTCGGGGATCAGCCCGGTCCCTCCTGCGTGCTGCCGATCCTACTACTGGTCCTGCTGTCAC
* * * *
11703511 AACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGAAATGAACT
302 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACT
* * * * * *
11703576 CTGTATGCCTAAGCCAACCCACGAAACGAGCGCGCCGGTGCTCAGTCGGCTGGAGAGGTAGAATG
367 CCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGTAGAATG
** * * * *
11703641 CATAAGCCGAGGATCGACCTGATCCCTCCTACGTGCTATCGATCCTACTGCTGCAACCCTCGATC
432 CGCAAGCCGAGGATCGACCTGATCCCCCCTGCGTGCTGTCGATCCTACTGCTGCAACCCTCGGTC
* * *
11703706 CGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAAAGAAACGAGCATGCAG
497 CGATCTGATCTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGA-CATGCGG
*
11703771 GCGCTGAGCC
560 GCACTGAGCC
11703781 AGTCAACCAA
Statistics
Matches: 1159, Mismatches: 200, Indels: 98
0.80 0.14 0.07
Matches are distributed among these distances:
825 48 0.04
826 2 0.00
827 5 0.00
828 3 0.00
829 7 0.01
830 423 0.36
831 107 0.09
832 129 0.11
833 1 0.00
834 4 0.00
837 1 0.00
838 46 0.04
843 1 0.00
848 1 0.00
849 1 0.00
850 369 0.32
851 8 0.01
852 3 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (827 bp):
AATGAACTACGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACCGAGCCAGTCGGAGAG
GCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTAAGTGCTTGCTACCGGTCCTGCTGCC
ACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGA
AATGAGCGTACGGGCGCTCAGCCGACCGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTCC
CTCCTGCGTGCTGCCGATCCTACTACTGGTCCTGCTGTCACAACCCTCGGTCCGGTCTGATCTTA
GACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
AACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGTAGAATGCGCAAGCCGAGGATCGACCTGATC
CCCCCTGCGTGCTGTCGATCCTACTGCTGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATG
AACTCGTATGCCTAAGTCAACCCACGAAACGACATGCGGGCACTGAGCCGACCGGAGAGGCATAA
TAAGCAAGCCAGGGATCGGCCAGATCCCCCTCTACCTGCTGTCAGTCCCGCTGCCACAACCCTCA
GTCCGACTGGGGCTCAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACTAAACGAGCGTG
CGGGCATACAGACCGACCGAAAGACAGAATGCGCAAGTCGAGGACCGGATCGGTCCCCCCTACGT
GCTGTCGATCCTACTACCCCAACCCTCGATCTATGACTTAGACTGGG
Found at i:11704047 original size:26 final size:26
Alignment explanation
Indices: 11704011--11704063 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11704001 CTGATCCGAT
*
11704011 CTTAGATTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
* *
11704037 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
11704063 C
1 C
11704064 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:11705306 original size:26 final size:26
Alignment explanation
Indices: 11705267--11705327 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
11705257 CCCTCAGTCC
*
11705267 ACTCCG-AT-CTTAGAC-TGGGAATGA
1 ACTCCGTATGCTTAGACAT-GGAATAA
11705291 ACTCCGTATGCTTAGACATGGAATAA
1 ACTCCGTATGCTTAGACATGGAATAA
*
11705317 ACTCTGTATGC
1 ACTCCGTATGC
11705328 CTAAGCCAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 6 0.19
25 2 0.06
26 23 0.72
27 1 0.03
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
ACTCCGTATGCTTAGACATGGAATAA
Found at i:11712829 original size:159 final size:157
Alignment explanation
Indices: 11712414--11712916 Score: 427
Period size: 158 Copynumber: 3.2 Consensus size: 157
11712404 AACTCTATAT
* * * * *
11712414 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTACGGGCGCTCAA
1 GCTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
11712479 CAAGCC-AGAGAGGCAGAATGCGCAAGCTGGGGATCAACCCAGTCCCCCCTACGTGCTGTCGATC
65 CCAGCCGA-AGAGGCAGAATGCGCAAGCTGGGGATCAACCCAGTCCCCCCTACGTGCTGCCGATC
* **
11712543 CTGCTGTCACAACCCTCGATCCGATCCGA
129 CCGCTACCACAACCCTCGATCCGATCCGA
* * * * * * *
11712572 TCTTAAACTGGAATTGAACTCAATATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAG
1 GCTTAGACTGGAA-TGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * ** *** * *
11712637 CCAACCGAAGAGGCATAATGCACAACCCAGGGATTGGCCCGGTCCTCCTCTACGTGCTGCCGATC
65 CCAGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCAACCCAGTCC-CCCCTACGTGCTGCCGATC
* * * * *
11712702 CCGCTACCATAACCCTCGGTTCGGT-TGA
129 CCGCTACCACAACCCTCGATCCGATCCGA
* * * * *
11712730 GGCTTAGACTTGGAATGAACTCCCTATGCCCAAGCCAACCCACGAAACGGGCATGCGGGCACTCA
1 -GCTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* ** * * * * *
11712795 GCCAGCCGAAAAGGCAGAATGCGCAAGCTGGGGATCGGCTC-GATCCCCCCTGCATGCTACTGAT
64 GCCAGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCAACCCAG-TCCCCCCTACGTGCTGCCGAT
* ** * * *
11712859 CCTGCTGTCGCAACCCTCGGTCCAATCCGA
128 CCCGCTACCACAACCCTCGATCCGATCCGA
* *
11712889 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACT-GGAATGAACTCCATATGC
11712917 TTAGACTGGG
Statistics
Matches: 267, Mismatches: 70, Indels: 16
0.76 0.20 0.05
Matches are distributed among these distances:
157 6 0.02
158 137 0.51
159 119 0.45
160 5 0.02
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.18
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CAGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCAACCCAGTCCCCCCTACGTGCTGCCGATCCC
GCTACCACAACCCTCGATCCGATCCGA
Found at i:11713211 original size:26 final size:25
Alignment explanation
Indices: 11713163--11713212 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
11713153 GATCCGATCA
*
11713163 TAGACTGGAATGAACTTCGTATGCT
1 TAGACTGGAATGAACTTCATATGCT
11713188 TAGACATGGAATGAAC-TCTATATGC
1 TAGAC-TGGAATGAACTTC-ATATGC
11713213 CTCAGCCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (25 bp):
TAGACTGGAATGAACTTCATATGCT
Found at i:11713532 original size:26 final size:26
Alignment explanation
Indices: 11713503--11713555 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11713493 CCGATCCGAT
11713503 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
11713529 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11713555 C
1 C
11713556 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11713914 original size:26 final size:26
Alignment explanation
Indices: 11713885--11713937 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11713875 CTGGTCTGAT
11713885 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
11713911 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
11713937 C
1 C
11713938 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:11714755 original size:26 final size:26
Alignment explanation
Indices: 11714726--11714778 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11714716 TCGGTCTGAT
*
11714726 CTTAGAC-TGGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
11714752 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
11714778 C
1 C
11714779 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:11714791 original size:183 final size:184
Alignment explanation
Indices: 11714568--11714935 Score: 463
Period size: 183 Copynumber: 2.0 Consensus size: 184
11714558 TCTGGCTGGG
* * * * *
11714568 GCTTAGACATGGAATGAACTCTGTCTGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * * * * * *
11714633 TCGGCCGGAAAGGTAGAATGCGCAAGGCGGGGATCGGCCCGGTCCCCCTGC-A-TGTTGTTGATC
66 TCGGCCGGAAAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCT-CTACTGCTGTCGATC
* * *
11714696 CTACTGTCGCAACCCTCGGT-TCGGTCTGATCTTAGACTGGGAATGAACTTCGTAT
130 CTACTGTCGCAACCCTCGGTCT-GGTCTGATCATAGACTGAGAATGAACTCCGTAT
* * **
11714751 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * *
11714816 TCGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATC
66 TCGGCCGGAAAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTAC-TGCTGTCGATC
* * *
11714881 CTACTGTCGGAACCCTCGGTCTGGTTTGATCATAGATTGAGAATGAACTCCGTAT
130 CTACTGTCGCAACCCTCGGTCTGGTCTGATCATAGACTGAGAATGAACTCCGTAT
11714936 ACCTAAGTCA
Statistics
Matches: 156, Mismatches: 25, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
182 1 0.01
183 98 0.63
185 56 0.36
186 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
TCGGCCGGAAAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTACTGCTGTCGATCC
TACTGTCGCAACCCTCGGTCTGGTCTGATCATAGACTGAGAATGAACTCCGTAT
Found at i:11715154 original size:159 final size:159
Alignment explanation
Indices: 11714751--11715218 Score: 430
Period size: 159 Copynumber: 2.9 Consensus size: 159
11714741 AACTTCGTAT
* * *
11714751 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGACTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTCAG
* * *
11714816 TCGGTCGGAGAGGCAGAATGCGTAAG-CCAGGGATC-AGCCCGATCCCCCTCTACGTGCTGTCGA
66 TCGATCAGAGAGGCAGAATGCGTAAGTCGA-GGATCGA-CCCGATCCCCCTCTACGTGCTGTCGA
* ** * ** *
11714879 TCCTACTGTCGGAACCCTCGGTCTGGTTTGA
129 TCCTACTGCCACAACCCTCGGTCCGACTGGA
* * * * * ** *
11714910 TCATAGA-TTGAGAATGAACTCCGTAT-ACCTAAGTCAACCCACGAAATGAGCATGCAGGCGCTG
1 GCTTAGACATG-GAATGAACTCCGTATGA-CTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTC
* * *
11714973 AGTCAACCAAAGAGGC-GTAATGCGTAAGTCGAGGATCGACCCGATCCCCCTCTACGTGCTGTCG
64 AGTCGATCAGAGAGGCAG-AATGCGTAAGTCGAGGATCGACCCGATCCCCCTCTACGTGCTGTCG
* * *
11715037 ATACC-GCTGCCACAACCCTTGGTCCGACTGGG
128 AT-CCTACTGCCACAACCCTCGGTCCGACTGGA
* ** * *
11715069 GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATAAAATGGGTGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGACTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTCAG
* ** * * * ** *
11715134 -CTGATCAGAGATGCAGAATGCACAAGTCGGGGATCGATCCGGTCCCCC-CTGTGTGCTGCCGAT
66 TC-GATCAGAGAGGCAGAATGCGTAAGTCGAGGATCGACCCGATCCCCCTCTACGTGCTGTCGAT
* *
11715197 CCTACTGTCGCAACCCTCGGTC
130 CCTACTGCCACAACCCTCGGTC
11715219 TGGTCTGATC
Statistics
Matches: 242, Mismatches: 56, Indels: 23
0.75 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 31 0.13
159 200 0.83
160 9 0.04
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGACTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTCAG
TCGATCAGAGAGGCAGAATGCGTAAGTCGAGGATCGACCCGATCCCCCTCTACGTGCTGTCGATC
CTACTGCCACAACCCTCGGTCCGACTGGA
Found at i:11716000 original size:26 final size:26
Alignment explanation
Indices: 11715962--11716014 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11715952 GGCTCAAAAT
11715962 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
11715988 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
11716014 C
1 C
11716015 CTAAGCGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:11716449 original size:158 final size:158
Alignment explanation
Indices: 11715987--11716488 Score: 467
Period size: 158 Copynumber: 3.2 Consensus size: 158
11715977 AACTCCGTAT
* * *
11715987 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCGAACCTACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * ** ** *
11716052 CCAATCGGAGAGGCAGAATGCTCAAGCCGGGGATCAGCCCGATCCCCCCTATGTTTTGTCGATCT
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTACTGACGATCT
* * * *
11716117 TGCTACCGCAACCCTCAGTCTGAGCCGA
131 TGCTGCCACAACCCTCGGTCCGAGCCGA
* * * ** * * * * *
11716145 TCTTAGA-TTGGGAATGAACTCCGTATGCATAAGTTAACCCATGAAATGAACGTACGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * * * *
11716209 GCCGGTCGAAGATGCATAATGCGCAAGCCAGGGATTGGCCCGATCCCCCTCTGCATACTGACGGT
65 GCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTACTGACGAT
* * *
11716274 C-CGACTGCCACAA-CCTCGGTCCG-GCTGGG
129 CTTG-CTGCCACAACCCTCGGTCCGAGC-CGA
* *
11716303 GCTTAGACATGGAATGAACTCCCTATGCCCT-AGCCAACCCACAAAATGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATG-CCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * *
11716367 ACCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCCTGCGTGCTGCCGATC
65 GCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTACTGACGATC
* * * *
11716432 TTGCTGGCACAACCCTCGATTCGATCCGA
130 TTGCTGCCACAACCCTCGGTCCGAGCCGA
*
11716461 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
11716489 TTAGACTGGG
Statistics
Matches: 264, Mismatches: 70, Indels: 21
0.74 0.20 0.06
Matches are distributed among these distances:
157 25 0.09
158 219 0.83
159 20 0.08
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTACTGACGATCT
TGCTGCCACAACCCTCGGTCCGAGCCGA
Found at i:11716491 original size:26 final size:26
Alignment explanation
Indices: 11716462--11716514 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11716452 TCGATCCGAT
11716462 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
11716488 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11716514 C
1 C
11716515 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11716847 original size:26 final size:26
Alignment explanation
Indices: 11716818--11716870 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11716808 CCGGTTTGAT
11716818 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
11716844 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
11716870 C
1 C
11716871 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:11717146 original size:159 final size:159
Alignment explanation
Indices: 11716844--11717201 Score: 373
Period size: 159 Copynumber: 2.3 Consensus size: 159
11716834 ACTCCGTATG
11716844 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGC
* * * * *
11716909 CGGTCGAAGAGGTAGAATGCACAAGTCGGGGATCGACCTGATCCTCTCTTGTATGCTGTCAATCC
66 CGGTCGAAGAGGCAGAATGCACAAGTCGAGGATCGACCCGATCCTCTCTTGCATGCTGCCAATCC
* * **
11716974 TGTTACCGTAACCCTCAGTCCAGTCTGAT
131 CGCTACCACAACCCTCAGTCCAGTCTGAT
* * * * *
11717003 CTTAGACTAT-GAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTGAG
1 CTTAGAC-ATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAG
* * * * * **
11717067 CCGGTCGGAGAGGCATAATGCGCAAGTCGAGGATC-AGCCCGGTCCTC-CTTTGCGTGCTGCCGG
65 CCGGTCGAAGAGGCAGAATGCACAAGTCGAGGATCGA-CCCGATCCTCTC-TTGCATGCTGCCAA
* * ** * **
11717130 TCCCGCTGCCACAACCCTCAAT-TTGGCTAGGG
128 TCCCGCTACCACAACCCTCAGTCCAGTCT-GAT
** *
11717162 CTTAGACATGGAATGAACTCTCCATGCCTAATCCAACCCA
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCA
11717202 CAAAATGGGC
Statistics
Matches: 162, Mismatches: 32, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
158 7 0.04
159 153 0.94
160 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGC
CGGTCGAAGAGGCAGAATGCACAAGTCGAGGATCGACCCGATCCTCTCTTGCATGCTGCCAATCC
CGCTACCACAACCCTCAGTCCAGTCTGAT
Found at i:11724246 original size:159 final size:159
Alignment explanation
Indices: 11723945--11724391 Score: 377
Period size: 159 Copynumber: 2.8 Consensus size: 159
11723935 ACTCCGTAGG
*
11723945 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGAGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTGCAGGAGCTCAGC
* * *
11724010 CGGTCGGAGAGGTAGAACGCGCAAGTCAGGGATCAACCCGATCCCCCCCTGCGTGCTGTCGATCC
66 CGGCCGAAGAGGTAGAACGCGCAAGTCAGGGATCAACCCGATCCCCCCCTGCGTGCTGCCGATCC
**
11724075 TGCTGCCGCAACCCTTAATTCAGTTTGAT
131 CACTGCCGCAACCCTTAATTCAGTTTGAT
* * * * *
11724104 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGTGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTGCAGGAGCTCAG
* * * * ** * **
11724168 CTGGCCGAAGAGGCT-TAATGCGTAAGTC-GAGGATTGACTCGATCCCCTTCTGCGTGCTGCCGA
65 CCGGCCGAAGAGG-TAGAACGCGCAAGTCAG-GGATCAACCCGATCCCCCCCTGCGTGCTGCCGA
* * * ** * **
11724231 TCCCATTG-CGACAACCCTCT-GTCCAACTAGGG
128 TCCCACTGCCG-CAACCCT-TAATTCAGTTTGAT
* * * * * * * * *
11724263 CTGAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-CAGGCGTGCGGGTGTTCAA
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGA-GCGTGCAGGAGCTCAG
* * * * ** * * *
11724327 CCGACTGGAGAGGTAGAATGCGCAAGTCAGGGATCGGCCCGGT-CCCCCCTGCGTACTGCCAATC
65 CCGGCCGAAGAGGTAGAACGCGCAAGTCAGGGATCAACCCGATCCCCCCCTGCGTGCTGCCGATC
11724391 C
130 C
11724392 TGCTGTCGTA
Statistics
Matches: 226, Mismatches: 53, Indels: 19
0.76 0.18 0.06
Matches are distributed among these distances:
158 24 0.11
159 198 0.88
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTGCAGGAGCTCAGC
CGGCCGAAGAGGTAGAACGCGCAAGTCAGGGATCAACCCGATCCCCCCCTGCGTGCTGCCGATCC
CACTGCCGCAACCCTTAATTCAGTTTGAT
Found at i:11724830 original size:26 final size:25
Alignment explanation
Indices: 11724801--11724852 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
11724791 CCGATCCAAT
11724801 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACT-CGTATG
*
11724827 CTTAGGCATGGAATGAACTCGTATG
1 CTTAGACATGGAATGAACTCGTATG
11724852 C
1 C
11724853 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 7 0.29
26 16 0.67
27 1 0.04
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (25 bp):
CTTAGACATGGAATGAACTCGTATG
Found at i:11725330 original size:26 final size:26
Alignment explanation
Indices: 11725301--11725352 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
11725291 CCGATCTGAT
*
11725301 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
* **
11725327 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
11725353 GCTAAGGCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:11725719 original size:26 final size:26
Alignment explanation
Indices: 11725681--11725733 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11725671 TCGGTCTGAT
11725681 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11725707 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
11725733 C
1 C
11725734 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11726030 original size:159 final size:157
Alignment explanation
Indices: 11725708--11726158 Score: 487
Period size: 159 Copynumber: 2.8 Consensus size: 157
11725698 CTCCGTATGC
* *
11725708 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCTGGCGCTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGCC
** * *
11725773 GGTTGGAGAGGCAGAATGCGCAAGCCGGAGATCGACCCGATCCCCCCCTGCGTGCTGTCGATCCT
66 GGCCGGAGAGGCAAAATGCGCAAGCCGG-GATCGACCCGGT-CCCCCCTGCGTGCTGTCGATCCT
** * * *
11725838 GCTATCGCAACTCTCATTCCGGTCCGATC
129 GCTGCCACAACTCTCATACCGGTCCGATA
* * ** * * * *
11725867 TTAGAC-TGGTAATGAACTCCGTATGCCTAGGTCAACCCATTAAATGAGCATACGGGTGCTGAGC
1 TTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGC
* * *
11725931 CGGCCGGAGAGGCATAATACGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
65 CGGCCGGAGAGGCAAAATGCGCAAGCC-GGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGATCC
* **
11725996 CGCTGCCACAAC-CTTCGA-ACCGGCTGGGA-A
128 TGCTGCCACAACTC-TC-ATACCGG-TCCGATA
* * * * * * *
11726026 TTAGACATGGAATGAACTCCCTATGCCTAAACCAGCCCACAAAACGAGTGTGCGGGCACTCAACC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGCC
* *
11726091 GGCCGGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGGTCCCCCCAGCGTGCTGTCGATCCTG
66 GGCCGGAGAGGCAAAATGCGCAAGCC-GGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTG
11726156 CTG
130 CTG
11726159 TCGCAACCCT
Statistics
Matches: 239, Mismatches: 46, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
158 29 0.12
159 201 0.84
160 9 0.04
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGCC
GGCCGGAGAGGCAAAATGCGCAAGCCGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGC
TGCCACAACTCTCATACCGGTCCGATA
Found at i:11726213 original size:26 final size:26
Alignment explanation
Indices: 11726184--11726235 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
11726174 TGGTCTGATT
*
11726184 TTAGACTAGGAATGAACTCTGTATGC
1 TTAGACTAGGAATAAACTCTGTATGC
* * *
11726210 TTAGACTGGGGATAAACTTTGTATGC
1 TTAGACTAGGAATAAACTCTGTATGC
11726236 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (26 bp):
TTAGACTAGGAATAAACTCTGTATGC
Found at i:11726222 original size:882 final size:879
Alignment explanation
Indices: 11723916--11726264 Score: 2846
Period size: 880 Copynumber: 2.7 Consensus size: 879
11723906 CGTCTCTCAA
* *
11723916 AATCTTAGGCTGGGAATGAACTCCGTAGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
11723981 CCCACGAAATGAGCGTGCAGGAGCTCAGCCGGTCGGAGAGGTAGAACGCGCAAGTCAGGGATCAA
66 CCCACAAAATGAGCGTGCAGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAG-CCGGGATCAA
* * * **
11724046 CCCGATCCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTAATT-CAGTTTGATCTTAGA
130 CCCGATCCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAA-CCTTCATTCCGGTCCGATCTTAGA
* * * *
11724110 CTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGTGTGCGGGCGCTGAGCTGGCCG
194 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAGCCGGCCG
* * * * * * * * * * *
11724175 AAGAGGCTTAATGCGTAAGTCGAGGATTGACTCGATCCCCTTCTGCGTGCTGCCGATCCCATTGC
259 GAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCACTGC
* * * * * *
11724240 GACAACCCTCTGTCCAACTAGGG-CTGAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
324 CACAACCCTC-GACCGACT-GGGAATTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * * *
11724304 GAAAC-AGGCGTGCGGGTGTTCAACCGACTGGAGAGGTAGAATGCGCAAGTCAGGGATCGGCCCG
387 AAAACGA-GCGTGCGGGCGCTCAACCGGCCGGAGAGGTAGAATGCGCAAGTCGGGGATCGGCCCG
* * *
11724368 GTCCCCCCTGCGTACTGCCAATCCTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTCGACTGGGA
451 GTCCCCCCTGCGTGCTGCCGATCCTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACT-GGA
* *
11724433 ATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCCAAGCCAACCCACGAAACGAGCG
515 ATGAACTCTGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCG
* * * * * *
11724498 TGCAGACACTCAGCAGGCCAGAGAGGCTGAGCGAAGAGGCATAATGCACAAGCCAGGGATCAGCC
580 TGCAGACACTCAACAGACCAGAGAGGCCGACCGAAGAGGCATAATGCACAAGCCAGGAATCAACC
* ** * *
11724563 CGATTCCCCTCTACGTGCTGTCGATCCCGCTGTCGGTCCTGCTGTAACAACCTTCGGTCGAGCTG
645 CGAATCCCCTCTACGTGCTGTCGATCCCGCTACCGGTCCTGCTGTAACAACCCTCGATCGAGCTG
* * * ** *
11724628 GGGGTTAGACATGGAATGAACTTTGTATCCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC
710 GGGCTTAGACATGGAATGAACTTCGTATCCCTAAGCCAACCCACGAAACGAACGAACGGGCGCTC
* * * * * * * * *
11724693 AGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTGTTGAT
775 AACCGATCGAAAAAGCAGAATGCGCAAGCCGAGGACCGACCCGATCCCCCCTGCATGCTATCGAT
* * *
11724758 CCTGCTGCTGGTCCTGCTGCCACAATCGTTGGTCCGATCC
840 CCTGCTGCTGGTCCTGCTGCCACAACCCTTAGTCCGATCC
*
11724798 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCATGGAATGAACT-CGTATGCCTAAGCCAA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
11724862 CCTACAAAACGAGCGTTCGGGCGTTCAGCCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCAA
66 CCCACAAAATGAGCGTGCAGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCC-GGGATCAA
* * ** * *
11724927 CCCGAT-CCCCCCTGCATACTGTCGATCCTGCTACCGCAACCTTCGGTCTGGTCCGATCTTAGAT
130 CCCGATCCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCTTCATTCCGGTCCGATCTTAGAC
* * * * *
11724991 TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGTTGAACCGACCGG
195 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAGCCGGCCGG
* * * * * *
11725056 AGAGACATAATGCGCAAGCCGAGGATCGGCCCAGTCCACCTCAGCGTGCTGTCGGTCCCACTGTC
260 AGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCACTGCC
* * *
11725121 ACAACCCCCGGACCGTCTAGGAATTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAA
325 ACAACCCTC-GACCGACTGGGAATTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAA
* * * * * * * * *
11725186 AATGGGCGTGCAGGCGCTCAGCCGGCCGAAGATGTAGAATGCGTAAGTCGGGGATCGGGCCGATC
389 AACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGTAGAATGCGCAAGTCGGGGATCGGCCCGGTC
* * ** * * *
11725251 CCTCCTGCGTGCTGCCGATCCTACTACCGTAACTCTTGGTCCGATCTGATCTTAGACTGGAAATG
454 CCCCCTGCGTGCTGCCGATCCTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGG-AATG
* * * * *
11725316 AACTCTGTATGCTTAGATTGGGGATGAACTCCGTATGGCTAAGGCAACCCACGAAACGAGTGTGC
518 AACTCTGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC
* *** * * * * *
11725381 GGGTGCTCAACCGACC-GAAGAGGCCGACCGGAGAGGCATAATGCGCAAGTC-GAGAATCAACTC
583 AGACACTCAACAGACCAG-AGAGGCCGACCGAAGAGGCATAATGCACAAGCCAG-GAATCAACCC
* * * *
11725444 -AATCCCCTTCTGCGTGCTGTCGATCCCGCTACCGGTCCTGCTGTCACAACCCTCGATCGGGTTG
646 GAATCCCC-TCTACGTGCTGTCGATCCCGCTACCGGTCCTGCTGTAACAACCCTCGATCGAGCTG
* * *
11725508 GGGCTTAGACATGGAATGAACTTCGTATCCCTAAGCCAACCCATGAAACGAATGAACGGGCGTTC
710 GGGCTTAGACATGGAATGAACTTCGTATCCCTAAGCCAACCCACGAAACGAACGAACGGGCGCTC
* * * *
11725573 AACCGGTCGAAAAAGTAGAATGTGCAAGCCGAGGACCGACCCGATCCCCCCTGCCTGCTATCGAT
775 AACCGATCGAAAAAGCAGAATGCGCAAGCCGAGGACCGACCCGATCCCCCCTGCATGCTATCGAT
* * * *
11725638 CCTGCTGCTGGTCCTGTTGCCACAACCCTTAGTTCGGTCT
840 CCTGCTGCTGGTCCTGCTGCCACAACCCTTAGTCCGATCC
*
11725678 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
11725743 CCCACAAAATGAGCGTGCTGGCGCTCAGTCGGTTGGAGAGGCAGAATGCGCAAGCCGGAGATCGA
66 CCCACAAAATGAGCGTGCAGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGG-GATCAA
*
11725808 CCCGATCCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAA-CTCTCATTCCGGTCCGATCTTAGA
130 CCCGATCCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCT-TCATTCCGGTCCGATCTTAGA
* * * * * *
11725872 CTGGTAATGAACTCCGTATGCCTAGGTCAACCCATTAAATGAGCATACGGGTGCTGAGCCGGCCG
194 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAGCCGGCCG
* *
11725937 GAGAGGCATAATACGCAAGCC-AGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTG
259 GAGAGGCATAATGCGCAAGCCGA-GGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCACTG
* * * *
11726001 CCACAACCTTCGAACCGGCTGGGAATTAGACATGGAATGAACTCCCTATGCCTAAACCAGCCCAC
323 CCACAACCCTCG-ACCGACTGGGAATTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * * * *
11726066 AAAACGAGTGTGCGGGCACTCAACCGGCCGGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGG
387 AAAACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGTAGAATGCGCAAGTCGGGGATCGGCCCGG
* * * * *
11726131 TCCCCCCAGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCTGGTCTGATTTTAGACTAGGAA
452 TCCCCCCTGCGTGCTGCCGATCCTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACT-GGAA
* * * * *
11726196 TGAACTCTGTATGCTTAGACTGGGGATAAACTTTGTATGCCTAAGTCAACCCACAAAACGAGCAT
516 TGAACTCTGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGT
11726261 GCAG
581 GCAG
11726265 CGCTCAGCCG
Statistics
Matches: 1223, Mismatches: 229, Indels: 30
0.83 0.15 0.02
Matches are distributed among these distances:
879 17 0.01
880 638 0.52
881 151 0.12
882 415 0.34
883 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (879 bp):
AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
CCCACAAAATGAGCGTGCAGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGATCAAC
CCGATCCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCTTCATTCCGGTCCGATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAGCCGGCCGGA
GAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCACTGCCA
CAACCCTCGACCGACTGGGAATTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAA
CGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGTAGAATGCGCAAGTCGGGGATCGGCCCGGTCCC
CCCTGCGTGCTGCCGATCCTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGAATGAAC
TCTGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGA
CACTCAACAGACCAGAGAGGCCGACCGAAGAGGCATAATGCACAAGCCAGGAATCAACCCGAATC
CCCTCTACGTGCTGTCGATCCCGCTACCGGTCCTGCTGTAACAACCCTCGATCGAGCTGGGGCTT
AGACATGGAATGAACTTCGTATCCCTAAGCCAACCCACGAAACGAACGAACGGGCGCTCAACCGA
TCGAAAAAGCAGAATGCGCAAGCCGAGGACCGACCCGATCCCCCCTGCATGCTATCGATCCTGCT
GCTGGTCCTGCTGCCACAACCCTTAGTCCGATCC
Found at i:11727411 original size:159 final size:157
Alignment explanation
Indices: 11726931--11727426 Score: 455
Period size: 159 Copynumber: 3.1 Consensus size: 157
11726921 ACTTCGTATG
* * * *
11726931 CTTAGAC-ATGGAATGAACTCCGTCA-GCCTAACCCAACCCACGGAACGAGCGTGCGGGCGCTCA
1 CTTAGACTA-GGAATGAACTCCAT-ATGCCTAAACCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * * * * *
11726994 GCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGTTCCCCCCCATGTGCTGTCGATC
64 GCCGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATC
*
11727059 CTGCTACCACAACCCTCAGTCCAGTCTGAT
129 CTGCTACCACAACCCTCAGTCCTGTC-GAT
* ** * *
11727089 CTTAGACTAGGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTACGGCCGCTGAGC
1 CTTAGACTAGGAATGAACTCCATATGCCTAAACCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * * *
11727154 CTATCGAAGAGGCATAATGCGTAAGCCGAGAATCAGCCCGATCCCCCTCTACGTGCTGTCGGTCC
66 CGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGATCCCCC-CTACGTGCTGTCGATCC
* * * * **
11727219 CGCTACCGCAACCCTCAAT-CTAGCTGGGG
130 TGCTACCACAACCCTCAGTCCT-G-TCGAT
* * * *
11727248 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAACGGGGCGT-CTGGGTGCTC
1 CTTAGACTA-GGAATGAACTCCATATGCCTAAACCAACCCACGAAAC-GAGCGTAC-GGGCGCTC
* * *
11727311 AGCCGACCGGAGAGGTAGAATACGTAAGCCGAGGATCGGCCC-AGTCCCCCCTGCGTGCTGTCGA
63 AGCCGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGA-TCCCCCCTACGTGCTGTCGA
** * *
11727375 TCCTGCTGTCACAACCCTCGGTCCTGTTCAAT
127 TCCTGCTACCACAACCCTCAGTCCTG-TCGAT
* *
11727407 CTTAGACTGGGAATCAACTC
1 CTTAGACTAGGAATGAACTC
11727427 TGTATGCTTA
Statistics
Matches: 265, Mismatches: 62, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
157 1 0.00
158 90 0.34
159 121 0.46
160 53 0.20
ACGTcount: A:0.24, C:0.32, G:0.25, T:0.18
Consensus pattern (157 bp):
CTTAGACTAGGAATGAACTCCATATGCCTAAACCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCT
GCTACCACAACCCTCAGTCCTGTCGAT
Found at i:11727436 original size:26 final size:26
Alignment explanation
Indices: 11727407--11727462 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
11727397 CCTGTTCAAT
**
11727407 CTTAGAC-TGGGAATCAACTCTGTATG
1 CTTAGACAT-GGAATCAACTCCATATG
*
11727433 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATCAACTCCATATG
11727459 CTTA
1 CTTA
11727463 AGCCAACCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATCAACTCCATATG
Found at i:11727574 original size:184 final size:185
Alignment explanation
Indices: 11727247--11727617 Score: 482
Period size: 184 Copynumber: 2.0 Consensus size: 185
11727237 TCTAGCTGGG
* * * ***
11727247 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAACGGGGCGTCTGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAACCAACCCACGAAACGGAGCGTCTGACCGCTCA
*
11727312 GCCGACCGGAGAGGTAGAATACGTAAGCCGAGGATCGGCCCAGTCCCCCCTGCGTGCTGTCGATC
66 GCCGACCGGAGAGGTAGAATACGCAAGCCGAGGATCGGCCCAGTCCCCCCTGCGTGCTGTCGATC
* * ** *
11727377 CTGCTGTCACAACCCTCGGTCCTG-TTCAATCTTAGACTGGGAATCAACTCTGTAT
131 CTGCTGCCACAACCCTCAGTCC-GACCCAATCTTAGACTGGGAATCAACTCCGTAT
* * *
11727432 GCTTAGACATGGAATGAACTCCATATGCTTAAGCCAACCCACGAAA-TGAGCGTGC-GACCGCTC
1 GCTTAGACATGGAATGAACTCCATATGCCTAAACCAACCCACGAAACGGAGCGT-CTGACCGCTC
* * * *
11727495 AGCCGACCGGAGAGGTAGAATGCGCCAGCC-AGGGATCGGCCC-GATCCCCTCTGCGTGCTGTTG
65 AGCCGACCGGAGAGGTAGAATACGCAAGCCGA-GGATCGGCCCAG-TCCCCCCTGCGTGCTGTCG
* *
11727558 ATCTTGCTGCCACAACCCTCAGTCCGACCCAATCTTAGACTGGGAATGAACTCCGTAT
128 ATCCTGCTGCCACAACCCTCAGTCCGACCCAATCTTAGACTGGGAATCAACTCCGTAT
11727616 GC
1 GC
11727618 CTAAGTCAAC
Statistics
Matches: 161, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
183 3 0.02
184 115 0.71
185 43 0.27
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.20
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAACCAACCCACGAAACGGAGCGTCTGACCGCTCA
GCCGACCGGAGAGGTAGAATACGCAAGCCGAGGATCGGCCCAGTCCCCCCTGCGTGCTGTCGATC
CTGCTGCCACAACCCTCAGTCCGACCCAATCTTAGACTGGGAATCAACTCCGTAT
Found at i:11727657 original size:158 final size:155
Alignment explanation
Indices: 11727433--11727932 Score: 477
Period size: 158 Copynumber: 3.2 Consensus size: 155
11727423 ACTCTGTATG
* * **
11727433 CTTAGACATGGAATGAACTCCATATGCTTAAGCCAACCCACGAAATGAGCGTGCGACCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * *
11727498 CGACCGGAGAGGTAGAATGCGCCAGCCAGGGATCGGCCCGATCCCCTCTGCGTGCTGTTGATCTT
66 CG-GCGGAGAGGTAGAATGCG-AAGCCAGGGATCGGCCCGATCCCCTCTGCGTGCTG-CGATCTT
* * * *
11727563 GCTGCCACAACCCTCAGTCCGACCCAAT
128 GCTGCCACAACCCTCGGTCTGACCCGAC
* * *
11727591 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * *
11727655 CCGGCGGAGAGGCATAATGCGTAAGCC-GAGGATCGGCCCGATCCCTCTCTTCGTGCTGCCAGTC
65 CCGGCGGAGAGGTAGAATGCG-AAGCCAG-GGATCGGCCCGATCCC-CTCTGCGTGCTGCGA-TC
** * ** **
11727719 TCACTGCCACAACCCTCGGTCTGGCTGGGG
126 TTGCTGCCACAACCCTCGGTCTGACCCGAC
* * * * *
11727749 CTTAGACATGGCATGAACTCCCTATGCCTAACCCAACCCACGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * * * * *
11727814 CGGGCAGAGAGGTAGAATGTGTAGTCAAGGATC-GCCACGATCCCCCCTGTGTGCTGCCGATCCT
66 C-GGCGGAGAGGTAGAATGCGAAGCCAGGGATCGGCC-CGATCCCCTCTGCGTGCTG-CGATCTT
** ** *
11727878 GCTGCTGCAACCCTCGGTCTGTTCTGAC
128 GCTGCCACAACCCTCGGTCTGACCCGAC
11727906 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
11727933 TTAGACATGG
Statistics
Matches: 275, Mismatches: 57, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
156 2 0.01
157 93 0.34
158 164 0.60
159 16 0.06
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.19
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGGCGGAGAGGTAGAATGCGAAGCCAGGGATCGGCCCGATCCCCTCTGCGTGCTGCGATCTTGCT
GCCACAACCCTCGGTCTGACCCGAC
Found at i:11727944 original size:26 final size:26
Alignment explanation
Indices: 11727906--11727958 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11727896 CTGTTCTGAC
*
11727906 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
11727932 CTTAGACAT-GGAATGAACTACGTATG
1 CTTAGAC-TGGGAATGAACTACGTATG
11727958 C
1 C
11727959 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:11727995 original size:499 final size:498
Alignment explanation
Indices: 11726903--11728530 Score: 2056
Period size: 499 Copynumber: 3.3 Consensus size: 498
11726893 GTGGCTCAAA
* *
11726903 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTCA-GCCTAACCCAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGT-ATGCCTAAGCCAA
* * * * *
11726967 CCCACGGAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGA
65 CCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGG
* * *** * * * *
11727032 CCCGTTCCCCCCCATGTGCTGTCGATCCTGCTACCACAACCCTCAGTCC-AGTCTGATCTTAGAC
130 CCCGATCCCCTCTGCGTGCTGTTGATCTTGCTGCCACAACCCTCAGTCCGA-TCCGATCTTAGAC
* * * * * *
11727096 TAGGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTACGGCCGCTGAGCCTATCGA
194 TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAGCCGA-CGG
* * * *
11727161 AGAGGCATAATGCGTAAGCCGAGAATCAGCCCGATCCCCCTCTACGTGCTGTCGGTCCCGCTACC
258 AGAGGCATAATGCGTAAGCCGAGGATCAGCCCGATCCCCCTCTTCGTGCTGCCAGTCCCGCTACC
* ** *
11727226 GCAACCCTCAATCTAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCATGA
323 ACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCATGA
* * *
11727291 AACGGGGCGT-CTGGGTGCTCAGCCGACCGGAGAGGTAGAATACGTAAGCCGAGGATCGGCCC-A
388 AAC-GGGCGTGC-GGGTGCTCAGCCGAGCGGAGAGGTAGAATGCGT-AG-CAAGGATCGGCCCGA
*
11727354 GTCCCCCCTGCGTGCTGTCGATCCTGCTG-TCACAACCCTCGGTCCTGTTCA
449 -TCCCCCCTGCGTGCTGTCGATCCTGCTGCT-ACAACCCTCGGTCCTGTTCG
* * * *
11727405 ATCTTAGACTGGGAATCAACTCTGTATGCTTAGACATGGAATGAACTCCATATGCTTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
11727470 CCACGAAATGAGCGTGCGACCGCTCAGCCGACCGGAGAGGTAGAATGCGCCAGCCAGGGATCGGC
66 CCACGAAACGAGCGTGCGAGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGC
* * *
11727535 CCGATCCCCTCTGCGTGCTGTTGATCTTGCTGCCACAACCCTCAGTCCGACCCAATCTTAGACTG
131 CCGATCCCCTCTGCGTGCTGTTGATCTTGCTGCCACAACCCTCAGTCCGATCCGATCTTAGACTA
*
11727600 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAGCCGGCGGAGA
196 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAGCCGACGGAGA
* * * * *
11727665 GGCATAATGCGTAAGCCGAGGATCGGCCCGATCCCTCTCTTCGTGCTGCCAGTCTCACTGCCACA
261 GGCATAATGCGTAAGCCGAGGATCAGCCCGATCCCCCTCTTCGTGCTGCCAGTCCCGCTACCACA
* * *
11727730 ACCCTCGGTCTGGCTGGGGCTTAGACATGGCATGAACTCCCTATGCCTAACCCAACCCACGAAAC
326 ACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAAC
* * * *
11727795 GGGCGTGCGGGCGCTCAGCCGGGCAGAGAGGTAGAATGTGTAGTCAAGGATC-GCCACGATCCCC
391 GGGCGTGCGGGTGCTCAGCCGAGCGGAGAGGTAGAATGCGTAG-CAAGGATCGGCC-CGATCCCC
* * *
11727859 CCTGTGTGCTGCCGATCCTGCTGCTGCAACCCTCGGT-CTGTTCTG
454 CCTGCGTGCTGTCGATCCTGCTGCTACAACCCTCGGTCCTGTTC-G
* *
11727904 ACCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTACGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * **
11727969 CCACGAAATGAGCGTGCGAGCGCTCAGCTGACCGGAGAGGCAGAATGTACAAGCCAGGGATCGGC
66 CCACGAAACGAGCGTGCGAGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGC
* *
11728034 CCGAT-CCCTCCTGCGTGCTGTTGATCTTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACT
131 CCGATCCCCT-CTGCGTGCTGTTGATCTTGCTGCCACAACCCTCAGTCCGATCCGATCTTAGACT
* * *
11728098 CA-GAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCTCTGAGCCGATGGA
195 -AGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAGCCGACGGA
* * * * *
11728162 GAGGCATAATGCGCAAGTCGGGGATCAGCTCGGTCCCCCT-TTCGTGCTGCCAGTCCCGCTACCA
259 GAGGCATAATGCGTAAGCCGAGGATCAGCCCGATCCCCCTCTTCGTGCTGCCAGTCCCGCTACCA
* * * * *
11728226 CAACCCTCGGTCCGACTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCAATGAA
324 CAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCATGAA
** * * * **
11728291 ATAGGCATGCGGGTGCTCAGCC-AGCTGGAGAGGCAGAATGCGCAAGCTGGAGATCGGCCCGATC
389 ACGGGCGTGCGGGTGCTCAGCCGAGC-GGAGAGGTAGAATGCG-TAGCAAG-GATCGGCCCGATC
* * * *
11728355 CCCCCTGCGTGCTATCGATCCTGCTGCCACAACCCTCGGTCCAGTCCG
451 CCCCCTGCGTGCTGTCGATCCTGCTGCTACAACCCTCGGTCCTGTTCG
* * * *
11728403 ATCTTAGACTGGGAATAAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
* ** * * * *
11728467 CCCATGAAACGAGCAAGCGGGTGCTCAGCCGACCAGAGAGGCAGCATGCGCAAGCCGGGGATCG
65 CCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCG
11728531 AACGGGTGGT
Statistics
Matches: 974, Mismatches: 137, Indels: 33
0.85 0.12 0.03
Matches are distributed among these distances:
497 2 0.00
498 126 0.13
499 466 0.48
500 42 0.04
501 121 0.12
502 216 0.22
503 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (498 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGAGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGC
CCGATCCCCTCTGCGTGCTGTTGATCTTGCTGCCACAACCCTCAGTCCGATCCGATCTTAGACTA
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAGCCGACGGAGA
GGCATAATGCGTAAGCCGAGGATCAGCCCGATCCCCCTCTTCGTGCTGCCAGTCCCGCTACCACA
ACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAAC
GGGCGTGCGGGTGCTCAGCCGAGCGGAGAGGTAGAATGCGTAGCAAGGATCGGCCCGATCCCCCC
TGCGTGCTGTCGATCCTGCTGCTACAACCCTCGGTCCTGTTCG
Found at i:11728232 original size:341 final size:340
Alignment explanation
Indices: 11727591--11728237 Score: 729
Period size: 341 Copynumber: 1.9 Consensus size: 340
11727581 CCGACCCAAT
* * * *
11727591 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCCACGAAATGAGCGTACGAGCGCTCAGC
* * ** *
11727656 CGGCGGAGAGGCATAATGCGTAAGCCGAGGATCGGCCCGATCCCTCTCTTCGTGCTGCCAGTCTC
66 CGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCTCTCTGCGTGCTGCCAGTCTC
* * * * *
11727721 ACTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGCATGAACTCCCTATGCCTAACCCAAC
131 ACTGCCACAACCCTCGGTCCGGCTCGAGCTTAGACATAGAATGAACTCCCTATGCCTAACCCAAC
* * * *
11727786 CCACGAAACGGGCGTGCGGGCGCTCAGCCGGGCAGAGAGGTAGAATGTGTAGTCAAGGATCGCCA
196 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGG-AGAGAGGCAGAATGCGAAGTCAAGGATCGCCA
* * **
11727851 CGATCCCCCCTGTGTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCTGTTCTGACCTTAGACTGG
260 CGATCCCCCCTGTGTGCTGCCGATCCCGCTACCACAACCCTCGGTCTGTTCTGACCTTAGACTGG
11727916 GAATGAACTCCGTATG
325 GAATGAACTCCGTATG
*
11727932 CTTAGACAT-GGAATGAACTACGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAG
1 CTTAGAC-TGGGAATGAACTACGTATGCCTAAGCCAACCCACGAAATGAGCGTACGAGCGCTCAG
* * **
11727996 CTGACCGGAGAGGCAGAATGTACAAGCC-AGGGATCGGCCCGATCCCTC-CTGCGTGCTG-TTGA
65 CCG-CCGGAGAGGCAGAATGCACAAGCCGA-GGATCGGCCCGATCCCTCTCTGCGTGCTGCCAG-
** * *
11728058 TCTTGCTGCCACAACCCTCGGTCCGG-TCCGATCTTAGAC-TCAGAATGAACTCCGTATGCCTAA
127 TCTCACTGCCACAACCCTCGGTCCGGCT-CGAGCTTAGACAT-AGAATGAACTCCCTATGCCTAA
** * * * * * **
11728121 GTCAACCCACGAAATGAGCGTGCGGGCTCTGAGCCGATG-GAGAGGCATAATGCGCAAGTCGGGG
190 CCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG-GGAGAGAGGCAGAATGCG-AAGTCAAGG
* * *
11728185 ATCAG-CTCGGT-CCCCCTTTCGTGCTGCC-AGTCCCGCTACCACAACCCTCGGTC
253 ATC-GCCACGATCCCCCCTGT-GTGCTGCCGA-TCCCGCTACCACAACCCTCGGTC
11728238 CGACTGGGGC
Statistics
Matches: 252, Mismatches: 43, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
340 23 0.09
341 189 0.75
342 40 0.16
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.20
Consensus pattern (340 bp):
CTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCCACGAAATGAGCGTACGAGCGCTCAGC
CGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCTCTCTGCGTGCTGCCAGTCTC
ACTGCCACAACCCTCGGTCCGGCTCGAGCTTAGACATAGAATGAACTCCCTATGCCTAACCCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCGGGAGAGAGGCAGAATGCGAAGTCAAGGATCGCCAC
GATCCCCCCTGTGTGCTGCCGATCCCGCTACCACAACCCTCGGTCTGTTCTGACCTTAGACTGGG
AATGAACTCCGTATG
Found at i:11728396 original size:158 final size:155
Alignment explanation
Indices: 11727931--11728431 Score: 501
Period size: 158 Copynumber: 3.2 Consensus size: 155
11727921 AACTCCGTAT
* * *
11727931 GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
* * ** * * * *
11727996 CTGACCGGAGAGGCAGAATGTACAAGCCAGGGATCGGCCCGATCCCTCCTGCGTGCTGTTGATCT
66 CCG-CTGGAGAGGCAGAATGCGCAAG-CTGGGATCGGCCCGATCCCCCCTGCGTGCT-TCGATCC
*
11728061 TGCTGCCACAACCCTCGGTCCGGTCCGA
128 TGCTGCCACAACCCTCGGTCCGCTCCGA
* * * *
11728089 TCTTAGAC-TCAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCT-CTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGG-TGCTC
* * * * * * * * * *
11728152 AGCCGATGGAGAGGCATAATGCGCAAGTCGGGGATCAGCTCGGTCCCCCTTTCGTGCTGCCAGTC
64 AGCCGCTGGAGAGGCAGAATGCGCAAG-CTGGGATCGGCCCGATCCCCCCTGCGTGCTTCGA-TC
* * * *
11728217 CCGCTACCACAACCCTCGGTCCGACT-GGG
127 CTGCTGCCACAACCCTCGGTCCG-CTCCGA
* * * * *
11728246 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCAATGAAAT-AGGCATGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGA-GCGTGCGGGTGCTCA
11728310 GCCAGCTGGAGAGGCAGAATGCGCAAGCTGGAGATCGGCCCGATCCCCCCTGCGTGCTATCGATC
65 GCC-GCTGGAGAGGCAGAATGCGCAAGCTGG-GATCGGCCCGATCCCCCCTGCGTGCT-TCGATC
11728375 CTGCTGCCACAACCCTCGGTCCAG-TCCGA
127 CTGCTGCCACAACCCTCGGTCC-GCTCCGA
* *
11728404 TCTTAGAC-TGGGAATAAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
11728432 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 57, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
156 3 0.01
157 121 0.44
158 146 0.53
159 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
CCGCTGGAGAGGCAGAATGCGCAAGCTGGGATCGGCCCGATCCCCCCTGCGTGCTTCGATCCTGC
TGCCACAACCCTCGGTCCGCTCCGA
Found at i:11728434 original size:26 final size:26
Alignment explanation
Indices: 11728405--11728457 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11728395 CCAGTCCGAT
11728405 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
11728431 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
11728457 C
1 C
11728458 CTAAGTCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:11729163 original size:26 final size:26
Alignment explanation
Indices: 11729125--11729177 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11729115 GGCTCAAAAT
11729125 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11729151 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
11729177 C
1 C
11729178 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11729686 original size:298 final size:298
Alignment explanation
Indices: 11729150--11729686 Score: 735
Period size: 298 Copynumber: 1.8 Consensus size: 298
11729140 AACTCCGTAT
*
11729150 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGGAACGAGCGTGCGCGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTGCGCGCGCTCAG
* * * ** * *
11729215 TCGGTCAGAGAGATAGAATGCGCAAGCCGAAGATCAGCCTGGTCCCCTGTGTGCTGTTGATCCTG
66 CCGGTCAGAGAGATAGAATGCGCAAGCCGAAGATCAGCCCGATCCCCTGCATGCTGTCGAACCTG
* *
11729280 CTATGCAACCCTCGGTCTGGTCCAATCTTACACTGGGAATGAACTCCGTATCCATAAGTCAACCC
131 CTATGCAACCCTAGGTCCGGTCCAATCTTACACTGGGAATGAACTCCGTATCCATAAGTCAACCC
* *
11729345 ACGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCATAATACGCAAGGCAGGGATCGGCAA
196 ACAAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCATAATACGCAAGGCAGGGATCGGCAA
11729410 GGTCCCGTTGCGTGCTGTTGGTCCCGCTGCGTGCTGGG
261 GGTCCCGTTGCGTGCTGTTGGTCCCGCTGCGTGCTGGG
* * *
11729448 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGGAACGGGCGTGCG-GCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTGCGCGCGCTCAG
* * * * *
11729512 CCGG-CAGAGTGGTAGAATGCGCAAGCC-AGGGATCGGCCCGATCCTCCTGCATGTTGTCGAACC
66 CCGGTCAGAGAGATAGAATGCGCAAGCCGA-AGATCAGCCCGATCC-CCTGCATGCTGTCGAACC
* *** * *
11729575 TGCTGTCGCTAACCCTAGGTCCGGTCTGTTCTTAGACT-GGAATGAACTCTGTATGCC-TAAGTC
129 TGCTAT-GC-AACCCTAGGTCCGGTCCAATCTTACACTGGGAATGAACTCCGTAT-CCATAAGTC
*
11729638 AACCCACAAAATGAGCGTGCGGGCGCTCAGCCGACC-AGAGAGGCATAAT
191 AACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCGA-AGAGGCATAAT
11729687 TTACAAGTCG
Statistics
Matches: 206, Mismatches: 27, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
295 1 0.00
296 32 0.16
297 29 0.14
298 120 0.58
299 24 0.12
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (298 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTGCGCGCGCTCAG
CCGGTCAGAGAGATAGAATGCGCAAGCCGAAGATCAGCCCGATCCCCTGCATGCTGTCGAACCTG
CTATGCAACCCTAGGTCCGGTCCAATCTTACACTGGGAATGAACTCCGTATCCATAAGTCAACCC
ACAAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCATAATACGCAAGGCAGGGATCGGCAA
GGTCCCGTTGCGTGCTGTTGGTCCCGCTGCGTGCTGGG
Found at i:11729951 original size:170 final size:170
Alignment explanation
Indices: 11729585--11729954 Score: 370
Period size: 171 Copynumber: 2.2 Consensus size: 170
11729575 TGCTGTCGCT
* * * * * * *
11729585 AACCCTAGGTCCGGTCTGTTCTTAGACTGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAAT
1 AACCCTCGGTCCGGTCTGATCTTAGACTGGAATAAACTCCGTATGCCTAAGCCAACCAACAAAAC
* * ** * *** *
11729650 GAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCATAATTTACAAGTCGGGGATCAGCCAAGTCCCC
66 GAGCGTGCGGGCGCTCAACCGACCAGAGAGGCAGAATGCACAAGCCAAAGATCAGCCAAGACCCC
*
11729715 CTCTGCGTGCTGTCAATCCCACTACCGGTCTTGCTACCAC
131 CTCTGCGTGCTGGCAATCCCACTACCGGTCTTGCTACCAC
* ** *
11729755 AACCCTCGGTCCGGGT-AGGGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCAACGAA
1 AACCCTCGGTCC-GGTCTGATCTTAGAC-TGGAATAAACTCCGTATGCCTAAGCCAACCAACAAA
* * * *
11729819 ACGAGCGTGCGGGTGCTCAACCGATC-GAAGAGGCAGAATGCGCAAGCCAAAGATCAGCC-CGAC
64 ACGAGCGTGCGGGCGCTCAACCGACCAG-AGAGGCAGAATGCACAAGCCAAAGATCAGCCAAGAC
* *** * * **
11729882 CCCC-CATGCGTGCTGGCGATCCTGTTGCTGGTCTTGCTACCGT
128 CCCCTC-TGCGTGCTGGCAATCCCACTACCGGTCTTGCTACCAC
*
11729925 AATCCTCGGTCCGGTCTGATCTTAGACTGG
1 AACCCTCGGTCCGGTCTGATCTTAGACTGG
11729955 GAATGAGCTC
Statistics
Matches: 159, Mismatches: 36, Indels: 11
0.77 0.17 0.05
Matches are distributed among these distances:
169 7 0.04
170 73 0.46
171 79 0.50
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (170 bp):
AACCCTCGGTCCGGTCTGATCTTAGACTGGAATAAACTCCGTATGCCTAAGCCAACCAACAAAAC
GAGCGTGCGGGCGCTCAACCGACCAGAGAGGCAGAATGCACAAGCCAAAGATCAGCCAAGACCCC
CTCTGCGTGCTGGCAATCCCACTACCGGTCTTGCTACCAC
Found at i:11729974 original size:26 final size:26
Alignment explanation
Indices: 11729945--11729997 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11729935 CCGGTCTGAT
* *
11729945 CTTAGAC-TGGGAATGAGCTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
11729971 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
11729997 C
1 C
11729998 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:11730484 original size:26 final size:26
Alignment explanation
Indices: 11730443--11730495 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11730433 TTTGATCGAT
*
11730443 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
* *
11730469 CTTAGACGGGGGATGAATTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
11730495 C
1 C
11730496 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCGTATG
Found at i:11731520 original size:157 final size:158
Alignment explanation
Indices: 11731188--11731520 Score: 438
Period size: 158 Copynumber: 2.1 Consensus size: 158
11731178 GCTTAGACAT
* * *
11731188 GGAATGAACTCTGTAAGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGGTCGGAG
* * *** *
11731253 AGGTAGAATGCGCAAGTCGAGGATAAGCCCGGTCCCCCCTACATGCTGTTGATCCTGCTGCCACA
66 AGGCAGAATGCGCAAGCCGAGGATAAGCCCGGTCCCCCCTACATGCTACCGATCCTACTGCCACA
*
11731318 ACCCTCGATCCGATCTGATCTTAGACTG
131 ACCCTCGATCCGATCTGATCTTAAACTG
* * *
11731346 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGCGCTCAGCCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGGTCGGAG
* * * * *
11731411 AGGCAGAATGCGCAAGCCGTA-GAT-CGACTCGG-CCCCCTTGCATGCTACCGATCCTACTGCCG
66 AGGCAGAATGCGCAAGCCG-AGGATAAG-CCCGGTCCCCCCTACATGCTACCGATCCTACTGCCA
* * *
11731473 TAACCCTCGGTCCGGTCTGATCTTAAACTG
129 CAACCCTCGATCCGATCTGATCTTAAACTG
11731503 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
11731521 TTAGACTGAG
Statistics
Matches: 151, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
157 67 0.44
158 83 0.55
159 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGGTCGGAG
AGGCAGAATGCGCAAGCCGAGGATAAGCCCGGTCCCCCCTACATGCTACCGATCCTACTGCCACA
ACCCTCGATCCGATCTGATCTTAAACTG
Found at i:11731891 original size:26 final size:26
Alignment explanation
Indices: 11731862--11731914 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11731852 CCGGTCTGAT
11731862 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
11731888 CTTAGACTGGGGTTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11731914 C
1 C
11731915 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11732377 original size:159 final size:159
Alignment explanation
Indices: 11732072--11732492 Score: 359
Period size: 159 Copynumber: 2.6 Consensus size: 159
11732062 CCGGCTGGGG
* * * * *
11732072 CTTAGACTTAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAAT
1 CTTAGACTGAGAATGAACTCCGTATGCATAAGCCAACCCACGAAACCAGCGTGCGAGTGCTCAAC
* * * ** *
11732137 CGACCAGAGAGGTAGATTGCGTAAGTTGGGGACCAGCCCGGTCCCCCCCTACATGCTATCGATCC
66 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGACCAGCCCGGTCCCCCCCTACATGCTACCGATCC
* * *
11732202 TGCTGCCGCAACCCTCGGTCTGATCTGAT
131 CGCTACCACAACCCTCGGTCTGATCTGAT
* *
11732231 CTTAGACTGAGAATGAACTCTGTATGCATAAGTCAACCCACGAAACCAGCGTGCGAGTGCT-AAG
1 CTTAGACTGAGAATGAACTCCGTATGCATAAGCCAACCCACGAAACCAGCGTGCGAGTGCTCAA-
* * * * * * * * * * *
11732295 CCGACCGGAGAGGCATAATGTGCAAGCCGGGGATCGGGCCGGTCCCCCTCTGCGTGCTGCCGGTC
65 CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGACCAGCCCGGTCCCCCCCTACATGCTACCGATC
* * * * *
11732360 CCGCTACCATAATCCTCGGTC-CAGCTGGGGT
130 CCGCTACCACAACCCTCGGTCTGATCT--GAT
* * * ** * *
11732391 -TTAGACATG-GAGTGAACTCCGTATGCCTAAGACAACCCACGAAACGGGCATGC-AGGCGCTCA
1 CTTAGAC-TGAGAATGAACTCCGTATGCATAAGCCAACCCACGAAACCAGCGTGCGA-GTGCTCA
* * * *
11732453 GCCTG-CTAGAGAGGCAGAATACGCAAGCCGGGGATCAGCC
64 ACC-GACCAGAGAGGCAGAATGCGCAAGCCGGGGACCAGCC
11732493 TGATCCTTTC
Statistics
Matches: 207, Mismatches: 48, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
158 6 0.03
159 195 0.94
160 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (159 bp):
CTTAGACTGAGAATGAACTCCGTATGCATAAGCCAACCCACGAAACCAGCGTGCGAGTGCTCAAC
CGACCAGAGAGGCAGAATGCGCAAGCCGGGGACCAGCCCGGTCCCCCCCTACATGCTACCGATCC
CGCTACCACAACCCTCGGTCTGATCTGAT
Found at i:11733305 original size:26 final size:26
Alignment explanation
Indices: 11733255--11733307 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11733245 GGCTAAAAAT
**
11733255 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11733281 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
11733307 C
1 C
11733308 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11733635 original size:159 final size:158
Alignment explanation
Indices: 11733283--11733653 Score: 372
Period size: 158 Copynumber: 2.3 Consensus size: 158
11733273 TTTGTATGCT
* * * *
11733283 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACCGACGCTCAGCCA
1 TAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCCGACGCTCAGCCA
* * * * * *
11733348 GTCGGAGAGGCAGAATACGTAAGCCGGGGATCGACCCGGTCCCACCTATGTGCTGTTGATCCTGT
66 GCCGAAGAGGCAGAATACGTAAGCCGGGGATCGACCCGATCCCACCTATGTGCTGTCGATCCAGC
* * *
11733413 TGCCACAACCCTCAGTCCGATCCGATCT
131 TGCCACAACCCTCAGTCCGATCAGAGCA
* * * * * * * *
11733441 TAGACT-GGGAATGAAC-CACGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGTTGAGC
1 TAGA-TATGGAATGAACTC-CGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCCGACGCTCAGC
* * * * * * * *
11733504 CGGCCGAAGAGGCATAGTGCGTAAGCCGGGGATCGACTCGATCCCCCTCTGTGTGCTGTCGGTCC
64 CAGCCGAAGAGGCAGAATACGTAAGCCGGGGATCGACCCGATCCCAC-CTATGTGCTGTCGATCC
*
11733569 AGCTGCCACAACCCTC-GATCCGA-CTAGGGCA
128 AGCTGCCACAACCCTCAG-TCCGATC-AGAGCA
* * *
11733600 TAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAATGGGCGTGCCG
1 TAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCCG
11733654 GTACTCAGGC
Statistics
Matches: 169, Mismatches: 37, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
157 1 0.01
158 90 0.53
159 77 0.46
160 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
TAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCCGACGCTCAGCCA
GCCGAAGAGGCAGAATACGTAAGCCGGGGATCGACCCGATCCCACCTATGTGCTGTCGATCCAGC
TGCCACAACCCTCAGTCCGATCAGAGCA
Found at i:11733793 original size:26 final size:26
Alignment explanation
Indices: 11733757--11733809 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11733747 CTGGTCCGAT
11733757 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* * *
11733783 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
11733809 C
1 C
11733810 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:11734182 original size:343 final size:344
Alignment explanation
Indices: 11733451--11734226 Score: 954
Period size: 344 Copynumber: 2.3 Consensus size: 344
11733441 TAGACTGGGA
*
11733451 ATGAAC-CACGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGTTGAGCCGGCCGAAGAG
1 ATGAACTC-CGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGGCCGAAGAG
* * * ** ** *
11733515 GCATAGTGCGTAAGCCGGGGATCGACTCGATCCCCCTCTGTGTGCTGTCGGTCCAGCTGCCACAA
65 GCATAATGAGTAAGCCGAGGATCGACTCGATCCCCCTCTGCATGCTGTCGAACCAGCAGCCACAA
* * *
11733580 CCCTCGATCCGACTAGGGCATAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAATG
130 CCCTCAATCCGACTAGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACG
* * *
11733645 GGCGTGCCGGTACTCAGGCCGATCGGAGAGGTAGAATTCGTAAGTCAAGGATCGACCCGGTCCCC
195 GGCGTGCCGGTACTCAGGCCGATCGGAGAGGCAAAATGCGTAAGTCAAGGATCGACCCGGTCCCC
* * *
11733710 TCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAAAGAAC
260 TCTACGTGCTGTCGATCCTACTGTCGCAACCCTCGGTCAGGTCCGATCTTAGACTGAGAAAGAAC
**
11733775 TCCATATGCTTAGACTGGGG
325 TCCATATGCTTAGACTACGG
* * * *
11733795 ATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCGCTGAGCTGGTCGAAGAGG
1 ATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGGCCGAAGAGG
*
11733860 CATAATGAGTAAGCCGAGGATCGA-TCCTG-TCCCCCTCTGCATGCTGTCGAACCCGCAGCCACA
66 CATAATGAGTAAGCCGAGGATCGACT-C-GATCCCCCTCTGCATGCTGTCGAACCAGCAGCCACA
* * * *
11733923 ATCCTCAATCTGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
129 ACCCTCAATCCGACTAGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAAC
* * * * * ***
11733988 GGTCGTGCGGGTGCTCA-GTCGGTCGGAGAGGCAAAATGCGTAAGTTGGGGATC-AGCCCGGTCC
194 GGGCGTGCCGGTACTCAGGCCGATCGGAGAGGCAAAATGCGTAAGTCAAGGATCGA-CCCGGTCC
* ** * * * *
11734051 ACC-CTACGTGCTGTCGATCCTATTGTCGCAACTGTTGGTCAGGTTCGATCTTAGATTGAGAATG
258 -CCTCTACGTGCTGTCGATCCTACTGTCGCAACCCTCGGTCAGGTCCGATCTTAGACTGAGAAAG
* *
11734115 AACTTCATATGCTTGGACTACGG
322 AACTCCATATGCTTAGACTACGG
* * * * * *
11734138 ATGAACTTCGTATGCCTAAGTCATCCCATGAAACGAGCGTGCGGGCACTCAGCCGACC-AGAGAG
1 ATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGGCCGA-AGAG
** *
11734202 GCAGCATGCGTAAGCCGAGGATCGA
65 GCATAATGAGTAAGCCGAGGATCGA
11734227 ACGGGTGGTA
Statistics
Matches: 367, Mismatches: 59, Indels: 13
0.84 0.13 0.03
Matches are distributed among these distances:
342 2 0.01
343 181 0.49
344 182 0.50
345 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.20
Consensus pattern (344 bp):
ATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGGCCGAAGAGG
CATAATGAGTAAGCCGAGGATCGACTCGATCCCCCTCTGCATGCTGTCGAACCAGCAGCCACAAC
CCTCAATCCGACTAGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGG
GCGTGCCGGTACTCAGGCCGATCGGAGAGGCAAAATGCGTAAGTCAAGGATCGACCCGGTCCCCT
CTACGTGCTGTCGATCCTACTGTCGCAACCCTCGGTCAGGTCCGATCTTAGACTGAGAAAGAACT
CCATATGCTTAGACTACGG
Found at i:11735306 original size:159 final size:159
Alignment explanation
Indices: 11734826--11735320 Score: 491
Period size: 159 Copynumber: 3.1 Consensus size: 159
11734816 ACTCCGTATG
* *
11734826 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACCAGCGTGTGGGTGCTCAA
1 CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGTGCTCAG
* * * * * * * *
11734890 CCGGTCGGAGAGGCAGAATACGCAAACCGGGGATTGGCCCGATCCCCCCTGCATACTGTCCATCC
66 CCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTTGCATGCTGTCGATCC
* * * *
11734955 TACTGCCATAACCCTTGGTCCAGTCTGAT
131 TGCTGCCACAACCCTCGATCCAGTCTGAT
* * * * * * *
11734984 CTTAGAC-TGGGAATGAACTCCGTATGCATAGGTCAACTCACGAAACAAGCGTGCGGGTGTTGAG
1 CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGTGCTCAG
* * * * * * * * *
11735048 CCGGCCGAAGAGGCATAATGCGCAAGTCGAGGATCGGTCGGGTCCCCCTCTGCTTG--GTACTGG
66 CCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCT-TGCATGCTGT-C-GA
* * **
11735111 TCCCGCTGCCACAACCCTCGATCTAG-CTGGGG
128 TCCTGCTGCCACAACCCTCGATCCAGTCT-GAT
* *** *
11735143 CTTAGACAT-GGAATGAACTCCCTATGCCTAAAGCCAACCCACGAAATGGGCGTGTGGGCGCTCA
1 CTTAGACATGGGAATGAACTCCGTATGCCT-AAGCCAACCCACGAAACAAGCGTGTGGGTGCTCA
* * *
11735207 GCCGGTCGGAGAGGCAAAATGCGTAAGCCGGGGATCGACCTGGTCCCCCTTGCATGCTGTCGATC
65 GCCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTTGCATGCTGTCGATC
* *
11735272 CTGCTGCCGCAACCCTCGATCCGGTCTGAT
130 CTGCTGCCACAACCCTCGATCCAGTCTGAT
*
11735302 CTTAGA-TTGGGAATGAACT
1 CTTAGACATGGGAATGAACT
11735321 TTGTATGCTT
Statistics
Matches: 263, Mismatches: 63, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 94 0.36
159 95 0.36
160 69 0.26
161 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGTGCTCAG
CCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTTGCATGCTGTCGATCC
TGCTGCCACAACCCTCGATCCAGTCTGAT
Found at i:11736063 original size:26 final size:26
Alignment explanation
Indices: 11736026--11736078 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11736016 GGCTCAAAAT
*
11736026 CTTAGACCAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
11736052 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
11736078 C
1 C
11736079 CTAAGATAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.23
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:11736583 original size:158 final size:158
Alignment explanation
Indices: 11736052--11736661 Score: 645
Period size: 158 Copynumber: 3.8 Consensus size: 158
11736042 ACTCCGTATG
** *
11736052 CTTAGACAAGGAATGAACTCCGTATGCCTAAGAT-AACCCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAA-ATCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *
11736116 CCTATACCAGAGAGGTAGAATGCGCAAGCCAGGGATTGACCCGGTCCCCCCTGCATGCTGTCGAT
65 CCGAT-CGA-AGAGGTAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGAT
* * * *
11736181 CCTGCTACCATAACCCTTGGTCCGGTCTGAT
128 CCTACTACCACAACCCTCGGTCCGGTCCGAT
* * * *
11736212 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * *
11736277 CGATCGAAGAGGCATAATGCGCAAGTC-GGAGATCGGCCCGATCCCCCTCTGCGTGCTGCCTG-T
66 CGATCGAAGAGGTAGAATGCGCAAGCCAGG-GATCGACCCGGTCCCCC-CTGCGTGCTGCC-GAT
* * ** **
11736340 CCCACTACCACAACCCTCGGTTCGGTTGGGG
128 CCTACTACCACAACCCTCGGTCCGGTCCGAT
* * ** * *
11736371 CTTAGACAT-GGAAGGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *
11736435 TCGGTCGAAGAGGTAGAATACGCAAGCCAGGGATCGGCCCAGTCCCCCCTGCGTGCTGCCGATCC
65 CCGATCGAAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCC
* ** *
11736500 TACTGCTGCAACCCTCAGTCCGGTCCGAT
130 TACTACCACAACCCTCGGTCCGGTCCGAT
* * *
11736529 CTTAGACTGGGAATGAACTCTGTATGCCTAAATCAACCCATGAAACGAGTGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCGTGCGGGCACTCAGC
** * * * * *
11736594 C-AGTCGAAGAGGTAGAATGCATAAGTCGGGGATCGACCCGGTCCCTCTTGCGTGCTGTCGATCC
66 CGA-TCGAAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCC
11736658 TACT
130 TACT
11736662 GCTAGTCCTG
Statistics
Matches: 368, Mismatches: 73, Indels: 20
0.80 0.16 0.04
Matches are distributed among these distances:
157 4 0.01
158 174 0.47
159 127 0.35
160 63 0.17
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CGATCGAAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCT
ACTACCACAACCCTCGGTCCGGTCCGAT
Found at i:11736727 original size:26 final size:26
Alignment explanation
Indices: 11736698--11736747 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
11736688 CCGGTCTGAT
11736698 CTTAGAC-TGGGAAAAAACTCCGTAGG
1 CTTAGACAT-GGAAAAAACTCCGTAGG
**
11736724 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATGGAAAAAACTCCGTA
11736748 TGCCTAAGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (26 bp):
CTTAGACATGGAAAAAACTCCGTAGG
Found at i:11737108 original size:159 final size:158
Alignment explanation
Indices: 11736722--11737224 Score: 403
Period size: 159 Copynumber: 3.2 Consensus size: 158
11736712 AAACTCCGTA
* *
11736722 GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 GGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-CTTA
* ** * * *
11736787 ACCGGCCA-GAGAGGTAGAATGCACAAGCTGGAGACCGGCCAAGTCCCCCCATGCGTGCTGTCGA
65 GCC-GATAGGAGAGGCAGAATGCACAAGCTCGAGACCGGCCAAGTCCCCCCATGCGTGCTGCCGA
* ** * *
11736851 TCCTGCTATCGTAACCCTCGATCTGATCTG
129 TCCTGCTACCACAACCCTCGATCCGAGCTG
** * * * * *
11736881 ATCTTAGAC-TAGGAATGAACTCTATATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGTTG
1 GGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCCTT-
* * **
11736945 AGCCGATAGGAGAGGCATAATGCGCAAGC-CGAGTACCGGCCCGGTCCCCCTC-TGCGTGCTGCC
64 AGCCGATAGGAGAGGCAGAATGCACAAGCTCGAG-ACCGGCCAAGTCCCCC-CATGCGTGCTGCC
* * * *
11737008 GATCCTGTTACCACAACCTTTGGTCCG-GCTGG
127 GATCCTGCTACCACAACCCTCGATCCGAGCT-G
* * *
11737040 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACACGAAACGGGCGTGCGGGCACTTA
1 GGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-CTTA
* * * * *** * * * ** * *
11737105 GCCGGTCGGAGAGGTAGATTGTGTAAG-TCAAGGATCAGCCCGGTCCCCCC-CGCGTGCTGTCGA
65 GCCGATAGGAGAGGCAGAATGCACAAGCTCGA-GACCGGCCAAGTCCCCCCATGCGTGCTGCCGA
*
11737168 TCCTGCTGCCACAACCCTCGATCCG-GTCTG
129 TCCTGCTACCACAACCCTCGATCCGAG-CTG
** *
11737198 ATCTTAAAC-TGAGAATGAACTCCATAT
1 GGCTTAGACATG-GAATGAACTCCATAT
11737225 ACTTAGACAT
Statistics
Matches: 273, Mismatches: 59, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 63 0.23
159 203 0.74
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCCTTAG
CCGATAGGAGAGGCAGAATGCACAAGCTCGAGACCGGCCAAGTCCCCCCATGCGTGCTGCCGATC
CTGCTACCACAACCCTCGATCCGAGCTG
Found at i:11737400 original size:184 final size:184
Alignment explanation
Indices: 11737042--11737403 Score: 447
Period size: 184 Copynumber: 2.0 Consensus size: 184
11737032 CCGGCTGGGG
* *
11737042 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACACGAAACGGGCGTGCGGGCACTTAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACACGAAACGAGCGTGCGGGCACTCAGC
* * * * * * ** * * *
11737107 CGGTCGGAGAGGTAGATTGTGTAAGTCAAGGATCAGCCCGGTCCCCCCCGCGTGCTGTCGATCCT
66 CGGTCGAAAAGGCAGAATGCGTAAGTCAAGGACCAGCCCAATCCCCCACGCGTGCTATCGATCCA
* * **
11737172 GCTGCCACAACCCTCGATCCGGTCTGATCTTAAACTGAGAATGAACTCCATATA
131 GCTACCACAACCCTCGATCCGATCCCATCTTAAACTGAGAATGAACTCCATATA
* * * *
11737226 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACACGAAACGAGCGTGCGGGCACTCAGC
* * *
11737291 CGGTCGAAAAGGCAGAATGCGTAAGTCGAGGACCGGCCCAATCCCCCATGCGTGCTATCGATCCA
66 CGGTCGAAAAGGCAGAATGCGTAAGTCAAGGACCAGCCCAATCCCCCACGCGTGCTATCGATCCA
** * * *
11737356 GCTACCGTAACCCTCGGTTCGATCCCATCTTAGACT-AGGAATGAACTC
131 GCTACCACAACCCTCGATCCGATCCCATCTTAAACTGA-GAATGAACTC
11737404 TGTATGCATA
Statistics
Matches: 148, Mismatches: 29, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
183 1 0.01
184 147 0.99
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.20
Consensus pattern (184 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACACGAAACGAGCGTGCGGGCACTCAGC
CGGTCGAAAAGGCAGAATGCGTAAGTCAAGGACCAGCCCAATCCCCCACGCGTGCTATCGATCCA
GCTACCACAACCCTCGATCCGATCCCATCTTAAACTGAGAATGAACTCCATATA
Found at i:11737681 original size:157 final size:157
Alignment explanation
Indices: 11737226--11737723 Score: 500
Period size: 157 Copynumber: 3.2 Consensus size: 157
11737216 ACTCCATATA
*
11737226 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * **
11737291 CGGTCGAAAAGGCAGAATGCGTAAGTCGAGGACCGGCCCAATCCCCCATGCGTGCTATCGATCCA
66 CGATCGGAGAGGCAGAATACGTAAG-CCAGGATCGGCCCAATCCCCCCTGCGTGCTGCCGATCCA
* * *
11737356 GCTACCGTAACCCTCGGTTCGATCCCAT
130 GCTACCGCAACCCTCGATTCGATCCCAG
* * * * * * *
11737384 CTTAGAC-TAGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
11737448 CCGA-CGGAGAGGCATAATATGCAAGCCAGGGATCGGCCCGATCCCCTCTGCGTGCTGCCGGTCC
65 CCGATCGGAGAGGCAGAATACGTAAGCCA-GGATCGGCCCAATCCCCCCTGCGTGCTGCCGATCC
* * * ***
11737512 CGCTACCACAACCCTCGATTCG-GCTGGGG
129 AGCTACCGCAACCCTCGATTCGATC-CCAG
* * * *
11737541 CTTAGACATGGAATGAACTCCCTATTCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
11737606 CGATCGGAGAGGCAGATTACGTAAGCCAGGATCGGCCAAATCCCCCCTGCGTGCTGCCGATCCTG
66 CGATCGGAGAGGCAGAATACGTAAGCCAGGATCGGCCCAATCCCCCCTGCGTGCTGCCGATCCAG
* * * * ** *
11737671 CTGCTGCAACCCTCGGTCCGATCTGAT
131 CTACCGCAACCCTCGATTCGATCCCAG
*
11737698 CTTAGAC-TGGGAATGAACTCGGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
11737724 TTTAGACTAG
Statistics
Matches: 269, Mismatches: 64, Indels: 15
0.77 0.18 0.04
Matches are distributed among these distances:
156 4 0.01
157 186 0.69
158 79 0.29
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGATCGGAGAGGCAGAATACGTAAGCCAGGATCGGCCCAATCCCCCCTGCGTGCTGCCGATCCAG
CTACCGCAACCCTCGATTCGATCCCAG
Found at i:11739770 original size:171 final size:171
Alignment explanation
Indices: 11739242--11739781 Score: 671
Period size: 171 Copynumber: 3.2 Consensus size: 171
11739232 AACACCATAT
* *
11739242 GCTTAGAC-TAGAGATGAACTTCGTATGCCTAAGTCAACCCAC-AAAACGAGCGTGCGGGTGCTC
1 GCTTAGACATGGA-ATGAACTCCGTATGCCTAAGTCAACCCACGAAAACGAGCGTGCGGGTGCTC
* * * *
11739305 AGCCGGCCGGAGAGGCATAATGCGTAAGCCGAGGATCAGCTCGGTCCCCCTCTGCATGCTGTCGA
65 AGCCGGCCGGAGAGGCATAATGCGTAAGCCGAGGATCACCT-GATCCCCCTCTGCGTGCTGCCGA
* *
11739370 TCCCGCTTCCGATCCTGCTGCCACAACCCTTGGTCCGGCTGGG
129 TCCCGCTACCGATCCTGCTGCCACAACCCTTGGTTCGGCTGGG
*
11739413 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACG-AAACGAGCGTGCAGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAACGAGCGTGCGGGTGCTCA
** *
11739477 GCCGGCCGGAGAGGCATAATGCGTAAGCCGAGGATCACCCCATCCCCCTCTGCGAGCTGCCGATC
66 GCCGGCCGGAGAGGCATAATGCGTAAGCCGAGGATCACCTGATCCCCCTCTGCGTGCTGCCGATC
*
11739542 CCGCTACCGATCCTGCTGCCACAACCCTTGG-TCTGACTGGG
131 CCGCTACCGATCCTGCTGCCACAACCCTTGGTTC-GGCTGGG
* * *
11739583 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAACAAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAACGAGCGTGCGGGTGCTCA
* * * * * * * * * *
11739648 GTCGGCTGGAGAGGCAGAATACGCAAGCTGGGGATCGATCTGATCCCCC-CTGTGTGCTACCGAT
66 GCCGGCCGGAGAGGCATAATGCGTAAGCCGAGGATC-ACCTGATCCCCCTCTGCGTGCTGCCGAT
* * * ** * *
11739712 CCTGCTACTGGTCCTGCTGCCGTAACCCTCGGTTCGGTCT-GA
130 CCCGCTACCGATCCTGCTGCCACAACCCTTGGTTCGG-CTGGG
*
11739754 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
11739782 TTAGACATGA
Statistics
Matches: 322, Mismatches: 39, Indels: 16
0.85 0.10 0.04
Matches are distributed among these distances:
169 1 0.00
170 99 0.31
171 206 0.64
172 16 0.05
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (171 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAACGAGCGTGCGGGTGCTCA
GCCGGCCGGAGAGGCATAATGCGTAAGCCGAGGATCACCTGATCCCCCTCTGCGTGCTGCCGATC
CCGCTACCGATCCTGCTGCCACAACCCTTGGTTCGGCTGGG
Found at i:11740288 original size:26 final size:26
Alignment explanation
Indices: 11740259--11740312 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
11740249 GGTCTGATCT
*
11740259 TAGACTGGGAATGAACTTCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
*
11740285 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
11740311 TA
1 TA
11740313 AGTTAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:11740862 original size:369 final size:367
Alignment explanation
Indices: 11740094--11741022 Score: 1087
Period size: 368 Copynumber: 2.5 Consensus size: 367
11740084 TCAGTCAGGT
* * * * *
11740094 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGGGTGTGGGCAC
1 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC
* * * * *
11740159 TCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCCTTCGTGCCGTCG
66 TCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGCCTCGGTCCCCCCTGCATGCCATCA
* * * * *
11740224 ATCCTATTGTCATAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAGA
131 ATCCTACTGTCACAACCCTCAGTCCGGTCTGATCTTAGACTGGCAATGAACTCCGTATGCCTAGA
* * * *
11740289 CTGGGGATGAACTCCGTATGCCTAAGTTAACCCACAAAACGAGGGTGCGGGTGCTCAGACGGCAA
196 CTGGGGATAAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGACGGCAA
* * * * * * * **
11740354 AGAGGTCGGCCGGAGAGGCATAATGCGCAAGTCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGT
261 ACAGGTCGACCGAAGAGGCATAATGCACAAGCCGAGGATCAACCCGATCCCCCTCTACGTGCTAC
* *
11740419 CGATCCCACTGTCGGTCTTGCTGCCACAACCCTCGGTCCGAC
326 CGATCCCACAGTCGGTCTTGCTACCACAACCCTCGGTCCGAC
** * * *
11740461 TGGGGCTTCCACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATACGGGCGC
1 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC
* * * * *
11740526 TCAGCCGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCT-GGTCCCCCCCTGCATGCTAT
66 TCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCG-CCTCGGT-CCCCCCTGCATGCCAT
* * *
11740590 CAATCCTACTG-CTACAACCTTC-GATCCTGTCTGATCTTAGACTGGCAATGAACTCCGTATGCT
129 CAATCCTACTGTC-ACAACCCTCAG-TCCGGTCTGATCTTAGACTGGCAATGAACTCCGTATGCC
* * * **
11740653 TAGACTGGGGTTAAACTCTATATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGTGCTCAGTTG
192 TAGACTGGGGATAAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGACG
* * *
11740718 GCCAGACAGGTCGATCGAAGAGGCATAATGCACAAGCC-AGGGATCAACCCGATCCTCCTCTACG
257 G-CAAACAGGTCGACCGAAGAGGCATAATGCACAAGCCGA-GGATCAACCCGATCCCCCTCTACG
**
11740782 TGCTACCGATCCTGCAGTCGGTCTTGCTACCACAACCCTCGGTCCGAC
320 TGCTACCGATCCCACAGTCGGTCTTGCTACCACAACCCTCGGTCCGAC
*
11740830 TGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC
1 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC
* * * * * * * * * **
11740895 TCAACCGGTCGAAGAGGTAGAATGCGCAAG-CTGAGGATGGACC-CGATCCCCCCTACGTGCTGT
66 TCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAG-GGATCG-CCTCGGTCCCCCCTGCATGCCAT
* * * * * * * *
11740958 CGATCCTGCTGCCATAACCCTCAGTCCGATCTTATCTTAGAATGGGAATGAACTCCGTATGCCTA
129 CAATCCTACTGTCACAACCCTCAGTCCGGTCTGATCTTAGACTGGCAATGAACTCCGTATGCCTA
11741023 AGTCAACCCA
Statistics
Matches: 471, Mismatches: 81, Indels: 19
0.82 0.14 0.03
Matches are distributed among these distances:
367 96 0.20
368 188 0.40
369 187 0.40
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (367 bp):
TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC
TCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGCCTCGGTCCCCCCTGCATGCCATCA
ATCCTACTGTCACAACCCTCAGTCCGGTCTGATCTTAGACTGGCAATGAACTCCGTATGCCTAGA
CTGGGGATAAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGACGGCAA
ACAGGTCGACCGAAGAGGCATAATGCACAAGCCGAGGATCAACCCGATCCCCCTCTACGTGCTAC
CGATCCCACAGTCGGTCTTGCTACCACAACCCTCGGTCCGAC
Found at i:11741558 original size:26 final size:26
Alignment explanation
Indices: 11741519--11741572 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
11741509 CCAGTTCGAT
11741519 CTTAGATTGGGATTCAACTCCGTATG
1 CTTAGATTGGGATTCAACTCCGTATG
* *
11741545 CTTAGATTGTGATTGAACTCCGTATG
1 CTTAGATTGGGATTCAACTCCGTATG
11741571 CT
1 CT
11741573 CAGCCGACCG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (26 bp):
CTTAGATTGGGATTCAACTCCGTATG
Found at i:11741940 original size:159 final size:159
Alignment explanation
Indices: 11741573--11741958 Score: 415
Period size: 159 Copynumber: 2.4 Consensus size: 159
11741563 TCCGTATGCT
*
11741573 CAGCCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGATCCCACC-CTACGTGCTGTC
1 CAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCC-CCTCTACGTGCTGTC
* * * *
11741637 GATCCTGCTACCGCAACCCTCGATCCGATTTGATCTTAGACTGAGAATGAACTCCGTATGCCTAA
65 GATCCCGCTACCACAACCCTCGATCCGATTGGATCTTAGACTGAGAATGAACTCCCTATGCCTAA
* * * *
11741702 GTCAACCAACAAAACGAGCGTTCGGGGGTT
130 GCCAACCAACAAAACGAGCGTGCGGGGCTC
* * * * * *
11741732 GAGCCGATCGGAGAAGCATAATGCGCAAGCCAGGGATCAACCCAATCCCCCTCTACGTGCTGTC-
1 CAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCTCTACGTGCTGTCG
* * * *
11741796 AGTCCCGCTACCACAACCCTC-AGTTCGGTTGGGTTTTAGACATG-GAATGAACTCCCTATGCCT
66 A-TCCCGCTACCACAACCCTCGA-TCCGATTGGATCTTAGAC-TGAGAATGAACTCCCTATGCCT
* * * *
11741859 AAGCCAACCCACGAAACGGGTGTGCGGGTGCTC
128 AAGCCAACCAACAAAACGAGCGTGCGGG-GCTC
* * * * * * *
11741892 CA-CCGACCGAAGAGGCAGAATGCGTAAGCTGGGGATCAGCTCGGT-CCCCTCTGCGTGCTGTCG
1 CAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCTCTACGTGCTGTCG
11741955 ATCC
66 ATCC
11741959 TACTGTCGTA
Statistics
Matches: 185, Mismatches: 36, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
158 23 0.12
159 157 0.85
160 5 0.03
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
CAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCTCTACGTGCTGTCG
ATCCCGCTACCACAACCCTCGATCCGATTGGATCTTAGACTGAGAATGAACTCCCTATGCCTAAG
CCAACCAACAAAACGAGCGTGCGGGGCTC
Found at i:11742397 original size:26 final size:26
Alignment explanation
Indices: 11742368--11742420 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
11742358 CCGATCTGAT
11742368 CTTAGAC-TGGGAATGAAC-TCTGTATG
1 CTTAGACAT-GGAATGAACTTC-GTATG
11742394 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
11742420 C
1 C
11742421 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:11742652 original size:158 final size:157
Alignment explanation
Indices: 11742394--11742920 Score: 556
Period size: 158 Copynumber: 3.3 Consensus size: 157
11742384 ACTCTGTATG
* *
11742394 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAGC
* * * * * *
11742459 TGATCGGAAAGGCAGAATGTGCAAGCCAGGAATCGGCCCAGTCCCCCCTGCGTGTTGTCGATCTT
66 CGATCGGAAAGGCAGAATGCGCAAGTCAGGGATCGGCCC-GTCCCCCCTGCGTGCTGTCGATCCT
*
11742524 GCTACCGCAACCCTCGGTCCGGTCTGAT
130 GCTACCGCAACCCTCGGTCTGGTCTGAT
* ** * * * *
11742552 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTCCAGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAG
* * * * ** *
11742616 CCAATCGGAAAGGCATAATGCGCAAGTCGGGGATCGGTCCGATCCCTTTCTGTGTGCTGTCGATC
65 CCGATCGGAAAGGCAGAATGCGCAAGTCAGGGATCGGCCCG-TCCC-CCCTGCGTGCTGTCGATC
* * **
11742681 CCGCTACCACAACCCTCGGTCTGGT-TGGGG
128 CTGCTACCGCAACCCTCGGTCTGGTCT-GAT
* * * *
11742711 CTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAGC
* * * * * *
11742776 CGACCGGGAAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCACCCCTACGTGCTGCCGATCCT
66 CGATCGGAAAGGCAGAATGCGCAAGTCAGGGATCGGCCC-GTCCCCCCTGCGTGCTGTCGATCCT
** * * **
11742841 GCTGTCGCAACCCTTGGTCTGATCCAAT
130 GCTACCGCAACCCTCGGTCTGGTCTGAT
* * *
11742869 CTTAGAC-TGGGAATGAACTCCGTATGCCTATGTCAACCCACGAAATGAGCAT
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCAT
11742921 GCGGATGCTC
Statistics
Matches: 295, Mismatches: 66, Indels: 16
0.78 0.18 0.04
Matches are distributed among these distances:
157 3 0.01
158 166 0.56
159 124 0.42
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAGC
CGATCGGAAAGGCAGAATGCGCAAGTCAGGGATCGGCCCGTCCCCCCTGCGTGCTGTCGATCCTG
CTACCGCAACCCTCGGTCTGGTCTGAT
Found at i:11742968 original size:317 final size:317
Alignment explanation
Indices: 11742393--11742968 Score: 751
Period size: 317 Copynumber: 1.8 Consensus size: 317
11742383 AACTCTGTAT
** *
11742393 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAG
1 GCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAG
** * * * * * * * *
11742458 TTGATCGGAAAGGCAGAATGTGCAAGCCAGGAATCGGCCCAGTCCCCCCTGCGTGTTGTCGATCT
66 CCGACCGGAAAGGCAGAATGCGCAAGCCAGGAATCGACCCAGTCACCCCTACGTGCTGCCGATCC
* **
11742523 TGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
131 TGCTACCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * ** *
11742588 CCCATAAAACGAGCGTCCAGGCGCTGAGCCAATCGGAAAGGCATAATGCGCAAGTCGGGGATCGG
196 CCCACAAAACGAGCATCCAGGCGCTCAGCCAATCCAAAAGGCAGAATGCGCAAGTCGGGGATCGG
11742653 TCCGATCCCTTTCTGTGTGCTGTCGATCCCGCTACCACAACCCTCGGTCTGGTTGGG
261 TCCGATCCCTTTCTGTGTGCTGTCGATCCCGCTACCACAACCCTCGGTCTGGTTGGG
* *
11742710 GCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAG
* * * *
11742775 CCGACCGGGAAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCACCCCTACGTGCTGCCGATCC
66 CCGACCGGAAAGGCAGAATGCGCAAGCCAGGAATCGACCCAGTCACCCCTACGTGCTGCCGATCC
** * * *
11742840 TGCTGTCGCAACCCTTGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTATGTCAA
131 TGCTACCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * * *
11742905 CCCACGAAATGAGCATGC-GGATGCTCAGTCGA-CCAAAGAGGCAGGATGCTCAAGTCGGGGATC
196 CCCACAAAACGAGCATCCAGG-CGCTCAGCCAATCCAAA-AGGCAGAATGCGCAAGTCGGGGATC
11742968 G
259 G
11742969 AACGGGTGGT
Statistics
Matches: 216, Mismatches: 41, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
316 5 0.02
317 211 0.98
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAG
CCGACCGGAAAGGCAGAATGCGCAAGCCAGGAATCGACCCAGTCACCCCTACGTGCTGCCGATCC
TGCTACCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACAAAACGAGCATCCAGGCGCTCAGCCAATCCAAAAGGCAGAATGCGCAAGTCGGGGATCGG
TCCGATCCCTTTCTGTGTGCTGTCGATCCCGCTACCACAACCCTCGGTCTGGTTGGG
Found at i:11743592 original size:26 final size:26
Alignment explanation
Indices: 11743554--11743606 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11743544 GGCTTAAACT
*
11743554 CTTAGACTGGGAAGGAACTTCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
*
11743580 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAAGGAACTCCGTATG
11743606 C
1 C
11743607 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Done.