Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 74 of 402
Found at i:11744495 original size:159 final size:158
Alignment explanation
Indices: 11744229--11744812 Score: 557
Period size: 159 Copynumber: 3.7 Consensus size: 158
11744219 ATTCGATCTG
* * * * * **
11744229 ATCTTAGATTGGGAATGAACTCTGGATGCCTAAGCCAACCAACGAAATGAGCGTGCGGGTACTCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGCGGGCGCTCA
* * * * * * *
11744294 ACCGATCGGAGATGCAGAAAGTGCAAGCCGGGGACCGACCCAGTCCCCCCTTGCGTGCTATCGAT
66 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGT-CCCCCTTGCGTGCTATCGAT
* *
11744359 CCTGCTGTCGCAACCCTCGGTCTGGTCTA
130 CCTGCTATCACAACCCTCGGTCTGGTCTA
* * *
11744388 ATCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGAGTGCGGGCGCTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGCGGGCGCTCA
* * * * * * *
11744453 GCTGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCAGTCCCCCTCTACTTGCTGTCTG-
66 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCT-TGCGTGCTATC-GA
* * * *
11744517 TCCCGCTACCACAACCCTCGGTCCGGT-TGG
129 TCCTGCTATCACAACCCTCGGTCTGGTCT-A
** * * *
11744547 GGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAACGGGCA-TGCGGGCGC
1 ATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACG-AAATGAG-AGTGCGGGCGC
* * ** * * *
11744610 TCAGCCGACCGAAGAGGTAGAATATGCAAGCCGAGGATCGGCCCAGTGTACCCC-TGCGTGCTAC
63 TCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCA--GTCCCCCTTGCGTGCTAT
*
11744674 CGATCCTGCTATCACAACCCTCGGTCTGGTCCA
126 CGATCCTGCTATCACAACCCTCGGTCTGGTCTA
* * * *
11744707 ATCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCACAAAATGAGAGTGCGGGCGCTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGCGGGCGCTCA
** * * * * * *
11744772 GCCGGTCGGAAAAGTATAATGCGCAAGTCGGGGATCAGCCC
66 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCC
11744813 GATCCTCCTT
Statistics
Matches: 336, Mismatches: 77, Indels: 24
0.77 0.18 0.05
Matches are distributed among these distances:
158 8 0.02
159 203 0.60
160 118 0.35
161 1 0.00
162 6 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGCGGGCGCTCA
GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTTGCGTGCTATCGATC
CTGCTATCACAACCCTCGGTCTGGTCTA
Found at i:11745482 original size:157 final size:158
Alignment explanation
Indices: 11745184--11745620 Score: 423
Period size: 157 Copynumber: 2.8 Consensus size: 158
11745174 ACTTCGTATG
* * * * * * *
11745184 CTTAGCCATGGAATGAACTCCGTATGCCTAAACCAACCCATGAAACGAGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGTCACTCAGC
* * * ** * * ** * * ** * *
11745249 TGGTCGGAGAGGCAGAATACGTAAGCTGGGGGTCGACCTGGTCTACCCTACGTACTGTCGATCCT
66 CGGCCGGAGAGGCAGAATACGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTACCGGTCCC
** * * *
11745314 GCTGTCGTAACCCTCGATCCGATCT-GAT
131 ATTGCCATAACCCTCGATCCGA-CTGGAC
* * * *
11745342 CTTAGAC-TGGAATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCACT-CGG-CACTGAG
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCA-TACGGTCACTCAG
* * *
11745404 CCGGTCGGAGAGGCATAATACGCAAGCCAGGGATCGACCCGTTCCCCCTCTGCGTGCTACCGGTC
65 CCGGCCGGAGAGGCAGAATACGCAAGCCAGGGATCGACCCGGTCCCCC-CTGCGTGCTACCGGTC
*
11745469 CCATTGCCATAACCCTCGATCCGACTGGGC
129 CCATTGCCATAACCCTCGATCCGACTGGAC
* * *
11745499 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATACGGTCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGTCACTCAGC
* ** * * *
11745564 CGGCCGGAGAGGCAGAATGCTTAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTA
66 CGGCCGGAGAGGCAGAATACGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTA
11745621 TCGATACTAC
Statistics
Matches: 228, Mismatches: 45, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
156 45 0.20
157 81 0.36
158 58 0.25
159 44 0.19
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGTCACTCAGC
CGGCCGGAGAGGCAGAATACGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTACCGGTCCC
ATTGCCATAACCCTCGATCCGACTGGAC
Found at i:11745544 original size:158 final size:157
Alignment explanation
Indices: 11745184--11745683 Score: 477
Period size: 158 Copynumber: 3.2 Consensus size: 157
11745174 ACTTCGTATG
* * *
11745184 CTTAGCCATGGAATGAACTCCGTATGCCTAAACCAACCCATGAAACGAGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATAC-GGCGCTCAGC
* * * * ** * * ** *
11745249 TGGTCGGAGAGGCAGAATACGTAAGCTGGGGGTCGACCTGGTCTACCCTACGTACTGTCGATCCT
65 CGGTCGGAGAGGCAGAATACGTAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCCC
* * * *
11745314 GCTGTCGTAACCCTCGATCCGATCTGAT
130 ACTGCCATAACCCTCGATCCGATCTGAC
* * * * *
11745342 CTTAGAC-TGGAATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCACT-CGGCACTGAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCA-TACGGCGCTCAGC
* * * * *
11745405 CGGTCGGAGAGGCATAATACGCAAGCCAGGGATCGACCCGTTCCCCCTCTGCGTGCTACCGGTCC
65 CGGTCGGAGAGGCAGAATACGTAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTACCGATCC
* *
11745470 CATTGCCATAACCCTCGATCCGA-CTGGGC
129 CACTGCCATAACCCTCGATCCGATCT-GAC
* *
11745499 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATACGGTCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGG-CGCTCAGC
* * * * * * * *
11745564 CGGCCGGAGAGGCAGAATGCTTAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATACT
65 CGGTCGGAGAGGCAGAATACGTAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCCC
* ** * * * * *
11745629 ACTACCGCAACCCTTGGTCTGGTCTGAT
130 ACTGCCATAACCCTCGATCCGATCTGAC
*
11745657 CTTAGAC-TAGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
11745684 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 61, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
156 47 0.17
157 80 0.29
158 100 0.37
159 46 0.17
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGCGCTCAGCC
GGTCGGAGAGGCAGAATACGTAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCCCA
CTGCCATAACCCTCGATCCGATCTGAC
Found at i:11745686 original size:26 final size:27
Alignment explanation
Indices: 11745657--11745714 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 27
11745647 CTGGTCTGAT
*
11745657 CTTAGACTAGGAATGAACTCTGTATG-
1 CTTAGACTAGGAATGAACTCCGTATGC
* *
11745683 CTTAGACTGGGGATGAACTCCGTATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
11745710 CTTAG
1 CTTAG
11745715 TCAACCCACG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 23 0.82
27 5 0.18
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (27 bp):
CTTAGACTAGGAATGAACTCCGTATGC
Found at i:11746075 original size:26 final size:26
Alignment explanation
Indices: 11746024--11746076 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
11746014 TCGATCCGAT
*
11746024 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
11746050 CTTAGAC-ATGGAATGAGCTTCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
11746076 C
1 C
11746077 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:11746560 original size:26 final size:26
Alignment explanation
Indices: 11746524--11746576 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11746514 CCAATCCGAT
*
11746524 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11746550 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11746576 C
1 C
11746577 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11747465 original size:26 final size:26
Alignment explanation
Indices: 11747429--11747481 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11747419 CCAGTTTGAT
*
11747429 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11747455 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11747481 C
1 C
11747482 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11747664 original size:27 final size:26
Alignment explanation
Indices: 11747625--11747678 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 26
11747615 CCGATCTGAT
11747625 CTTAGACTGGGAATGAACTGTCGTATG
1 CTTAGACTGGGAATGAACT-TCGTATG
11747652 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
11747678 C
1 C
11747679 CTAAGCAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 8 0.31
27 17 0.65
28 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:11750230 original size:26 final size:26
Alignment explanation
Indices: 11750201--11750253 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11750191 CCGGTCTGAT
11750201 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
11750227 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
11750253 C
1 C
11750254 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:11751784 original size:658 final size:656
Alignment explanation
Indices: 11750226--11751796 Score: 1815
Period size: 657 Copynumber: 2.4 Consensus size: 656
11750216 AACTCCGTAT
* *
11750226 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAA-CC-CGAAACGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * ** * * * *
11750289 CCGGTCGGAGATGCAGAATGCGTAAGCTGGGGACCAGCCCAGTCCCTCCTGTGTGCTGTCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * *
11750354 TACTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
131 TACTACCACAACCCTCGGTCTG-GCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
* ** * ** *
11750419 CCCACGAAACGAGCGTTCGGGCACTGAGCCGACCGGAAAGGCATAATGAACAAGCCAGGGATCAG
195 CCCACAAAACGAGCGTTCGGGCACTGAGCCGACTAGAGAGGCATAATGCGCAAGCCGGGGATCAG
* * * * ** * *
11750484 CTCGGTCCTTCTCTGCATGTTGTCAGTCTCGATGCCACTACCCTCGGTTCAGCTGGGGCTTAGAC
260 CCCAGTCCCTCTCTGCATGCTACCAGTCTCGATGCCACAACCCTCGATTCAGCTGGGGCTTAGAC
* * * * *
11750549 ATGGAATGAACTCCTATGCCTAAGTCGACCCATGAAATGGACGTGTGGGCGATCAGCCGGTCGGG
325 ATGGAATGAACTCCTATGCCTAAGCCAACCCATGAAATGGACGTGCGGGCGATCAGCCGATCGAG
* * ** * **
11750614 GAGACAGAATGCGTAAGCCAGGGATCAGCCTGATCCGCTTGTGTGCTATCGATCCTGCTGCCGCA
390 GAGACAGAATGCGTAAACCAGGGATCAGCCTGATCCCCTTACGCGCTATCGATCCTAATGCCGCA
*
11750679 ACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAAC
455 ACCCTCGGTTCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAAC
* * * * * *
11750744 TAGCGTGCGGGCACTCAGCCAGCCGGACAGGCCGACTGGAGAGGCATAATGCGTAAGTCGAGGAT
520 TAGCATGCGAGCACTCAGCCAACCGAACAGGCCGACTGGAGAGGCATAATACGTAAGCCGAGGAT
* * * * ** * ** ** * *
11750809 CAGCCCGATCCCCCTCTGTGTGCTGTCTATCCCGCTACCGATTTTACTGCCTTAACTGTTAGTTC
585 CAGCCCGATCCCCCTCTGCGTGCTGCCAATCCCACTACCGATCCTACTACCACAACCCTCAGTCC
11750874 GACAGGG
650 GACAGGG
** * * * *
11750881 GCTTAGACATAAAATTAACTCCGTATGCCTAAGCCAACCCATG-AACGAGTGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * *
11750945 CCGGTCGGAGAGGAAGAATGCGCAAGCCAAGGATC-GACCCGATCCCCCCCTGCGTGCTGTCAAT
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAG-CCCGGT-CCCCCCTGCGTGCTGTCGAT
* * * *
11751009 CCTACTGCCACAACCCTCGGTCTGATCCGATCTTAGAGTGGGAATGAACTTCGTATGCCTAAGTC
129 CCTACTACCACAACCCTCGGTCTG-GCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTC
* *
11751074 AACCCACAAAACGAGCATTCGGGCACTGAGCCGA-TCG-GAAGGGCATAATGCGCAAGCCGGGGA
193 AACCCACAAAACGAGCGTTCGGGCACTGAGCCGACTAGAG-A-GGCATAATGCGCAAGCCGGGGA
* *
11751137 TCAGCCCAGTCCCTCTCTGCATGCTACC-GATCTCGGTGCCACAACCCTTTGATTC-GACTGGGG
256 TCAGCCCAGTCCCTCTCTGCATGCTACCAG-TCTCGATGCCACAACCC-TCGATTCAG-CTGGGG
*
11751200 CTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCATGAAATGGACGTGCGGGTGATCAGCC
318 CTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCATGAAATGGACGTGCGGGCGATCAGCC
*** * * *
11751265 GATCGAGGAGGA-AGAATGCGTAAATTGGGGATCGGTCTGATCCCCTTACGCGCTGTCGATCCTA
383 GATCGAGGA-GACAGAATGCGTAAACCAGGGATCAGCCTGATCCCCTTACGCGCTATCGATCCTA
* *
11751329 ATGCTGTAACCCTC-GTTCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACC
447 ATGCCGCAACCCTCGGTTCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACC
* *
11751393 CACGAAA-TGAGCATGCGAGCACTCAGCCAATCGAAGAGGCCGACTGGAGAGGCATAATACGTAA
512 CACGAAACT-AGCATGCGAGCACTCAGCCAACCGAACAGGCCGACTGGAGAGGCATAATACGTAA
* * * *
11751457 GCC-AGGGATCAGCCC-AGTCCCCCTCTGCGTGCTGCCAATCCTATTGCC-AGTCCTGCTACCAC
576 GCCGA-GGATCAGCCCGA-TCCCCCTCTGCGTGCTGCCAATCCCACTACCGA-TCCTACTACCAC
11751519 AACCCTCAGTCCGACTA-GG
638 AACCCTCAGTCCGAC-AGGG
* * * ** *
11751538 GCTTAGACATGGAATGACCTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
*
11751603 CCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCC-CTGCGTGCTGTCGATC
** * * ** * * * *
11751668 CCGCTACCACAACCTTCGATCTGGCTAGGGCTTAGACAT-GGACTGAACTCCCTATGCCTAAGCC
130 CTACTACCACAACCCTCGGTCTGGCT-GATCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTC
* * * * * * *
11751732 AACCCACAAAACGGGCGTGCGGGCGCTCAACCGACTAGAGAGGCAAAATGCGCAAGGCGGGGATC
193 AACCCACAAAACGAGCGTTCGGGCACTGAGCCGACTAGAGAGGCATAATGCGCAAGCCGGGGATC
11751797 GGCCAGGTCC
Statistics
Matches: 764, Mismatches: 130, Indels: 41
0.82 0.14 0.04
Matches are distributed among these distances:
655 34 0.04
656 59 0.08
657 369 0.48
658 294 0.38
659 7 0.01
660 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (656 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
TACTACCACAACCCTCGGTCTGGCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAAC
CCACAAAACGAGCGTTCGGGCACTGAGCCGACTAGAGAGGCATAATGCGCAAGCCGGGGATCAGC
CCAGTCCCTCTCTGCATGCTACCAGTCTCGATGCCACAACCCTCGATTCAGCTGGGGCTTAGACA
TGGAATGAACTCCTATGCCTAAGCCAACCCATGAAATGGACGTGCGGGCGATCAGCCGATCGAGG
AGACAGAATGCGTAAACCAGGGATCAGCCTGATCCCCTTACGCGCTATCGATCCTAATGCCGCAA
CCCTCGGTTCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACT
AGCATGCGAGCACTCAGCCAACCGAACAGGCCGACTGGAGAGGCATAATACGTAAGCCGAGGATC
AGCCCGATCCCCCTCTGCGTGCTGCCAATCCCACTACCGATCCTACTACCACAACCCTCAGTCCG
ACAGGG
Found at i:11751806 original size:159 final size:157
Alignment explanation
Indices: 11751511--11751881 Score: 399
Period size: 159 Copynumber: 2.4 Consensus size: 157
11751501 TGCCAGTCCT
* * *
11751511 GCTACCACAACCCTC-AGTCCGACTAGGGCTTAGACATGGAATGACCTCCATATGCCTAAGCCAA
1 GCTACCACAACCTTCGA-TCTGACTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA
* * * * *
11751575 CCCACGAAACGAGCGTGCAAGCACTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCAG
65 CCCACAAAACGAGCGTGCAAGCACTCAACCGCTCAGAGAGGCAAAATGCACAAGCCAGGGATCAG
* *
11751640 CCCGGTCCCCCTCTGCGTGCTG-TCGATCCC
130 CCAGGT-CCCC-CTGCGTGCTGCT-AATCCC
* * *
11751670 GCTACCACAACCTTCGATCTGGCTAGGGCTTAGACATGGACTGAACTCCCTATGCCTAAGCCAAC
1 GCTACCACAACCTTCGATCTGACTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
* ** * * * * *
11751735 CCACAAAACGGGCGTGCGGGCGCTCAACCGACT-AGAGAGGCAAAATGCGCAAGGCGGGGATCGG
66 CCACAAAACGAGCGTGCAAGCACTCAACCG-CTCAGAGAGGCAAAATGCACAAGCCAGGGATCAG
*
11751799 CCAGGTCCCCCTGCGTGCTGCTAATCCT
130 CCAGGTCCCCCTGCGTGCTGCTAATCCC
* * * * ** *
11751827 GCTACCGCAACCTTCGTTCTGATTCGATCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTACCACAACCTTCGATCTGACTAGGGCTTAGACAT-GGAATGAACTCCATATGC
11751882 TTAGACTGGG
Statistics
Matches: 177, Mismatches: 31, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
156 1 0.01
157 58 0.33
158 5 0.03
159 111 0.63
160 2 0.01
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (157 bp):
GCTACCACAACCTTCGATCTGACTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
CCACAAAACGAGCGTGCAAGCACTCAACCGCTCAGAGAGGCAAAATGCACAAGCCAGGGATCAGC
CAGGTCCCCCTGCGTGCTGCTAATCCC
Found at i:11751901 original size:25 final size:26
Alignment explanation
Indices: 11751855--11751905 Score: 95
Period size: 25 Copynumber: 2.0 Consensus size: 26
11751845 CTGATTCGAT
11751855 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11751881 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11751906 TCTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11752114 original size:26 final size:26
Alignment explanation
Indices: 11752063--11752115 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11752053 TCGATCTGAT
* *
11752063 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
11752089 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
11752115 C
1 C
11752116 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:11752300 original size:25 final size:26
Alignment explanation
Indices: 11752247--11752317 Score: 108
Period size: 25 Copynumber: 2.8 Consensus size: 26
11752237 CTGGTTCGAT
* *
11752247 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGGATGAACTCAGTACG
*
11752273 CTTAGAC-GGGGATGAACTCAGTATG
1 CTTAGACTGGGGATGAACTCAGTACG
11752298 CTTAGACTGGGGATGAACTC
1 CTTAGACTGGGGATGAACTC
11752318 CATATGCCTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 22 0.54
26 19 0.46
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCAGTACG
Found at i:11752323 original size:26 final size:26
Alignment explanation
Indices: 11752247--11752324 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
11752237 CTGGTTCGAT
* * *
11752247 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGGATGAACTCCATATG
11752273 CTTAGAC-GGGGATGAACT-CAGTATG
1 CTTAGACTGGGGATGAACTCCA-TATG
11752298 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCATATG
11752324 C
1 C
11752325 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
24 1 0.02
25 20 0.43
26 23 0.50
27 2 0.04
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCATATG
Found at i:11752519 original size:26 final size:26
Alignment explanation
Indices: 11752481--11752533 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11752471 CCGATCTGAT
11752481 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11752507 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
11752533 C
1 C
11752534 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11752844 original size:156 final size:157
Alignment explanation
Indices: 11752506--11752886 Score: 432
Period size: 156 Copynumber: 2.4 Consensus size: 157
11752496 AACTCCATAT
* * * * *
11752506 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-CAACCCATGAAATGAACGTGTGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAA-CTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * **
11752570 GCCGGTCGGAGACGTAGAATGCGCAAGCTGGGGATCGACCGATCCACCTTGCATGCTGTCGATCC
65 GCCGGTCGGAGACGGAGAATACGCAAGCCGACGATCGACCGATCCACCTTGCATGCTGTCGATCC
*
11752635 TACTGCCACAACCCTCGGTCCGGTCCGA
130 TACTGCCACAACCCTCGATCCGGTCCGA
* * * * *
11752663 TCCTAGAC-TGGGAATGAACTTCGTATGCCTAACTCAACCCACGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
11752727 GCTGGTCGGAGA-GGATAATACGCAAGCCGACGATCGGCCCGATCC-CCTATGCGTGCTGTCGGT
65 GCCGGTCGGAGACGGAGAATACGCAAGCCGACGATC-GACCGATCCACCT-TGCATGCTGTCGAT
* * *
11752790 CC-GCTGCCACAACCCTCGATCCGG-CTGGG
128 CCTACTGCCACAACCCTCGATCCGGTC-CGA
* * *
11752819 GCTTAGACATGTAATGAACTCCGTATGCCTAATTCAACCCACGAAACGAGCGTGCGGACGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
11752884 CCG
66 CCG
11752887 ACCAGAGAGG
Statistics
Matches: 185, Mismatches: 33, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
155 1 0.01
156 100 0.54
157 84 0.45
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGACGGAGAATACGCAAGCCGACGATCGACCGATCCACCTTGCATGCTGTCGATCCT
ACTGCCACAACCCTCGATCCGGTCCGA
Found at i:11753558 original size:26 final size:26
Alignment explanation
Indices: 11753517--11753569 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11753507 GGCTCAAAAT
* *
11753517 CTTAGACTAGGAATGAATTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
11753543 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11753569 C
1 C
11753570 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11753925 original size:25 final size:26
Alignment explanation
Indices: 11753897--11753948 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11753887 TCGATCTGAT
11753897 CTTAGAC-TGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
11753922 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
11753948 C
1 C
11753949 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:11754349 original size:159 final size:159
Alignment explanation
Indices: 11753921--11754353 Score: 464
Period size: 159 Copynumber: 2.7 Consensus size: 159
11753911 AACTCTGTAT
* * * *
11753921 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGATCGTTCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
11753986 CCGGTTGGAGAGGCAGAATGCACAAGTCAGGGATC-AGCCCGGTCCCCC-CTGCGTGCTGTCAAT
66 CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGA-CCCGGTCCCCCTCTGCATGCTATCAAT
* * ** *
11754049 CCTACTATCGTAACCCTCAGTCTGGTCTGA
130 CCCACTACCACAACCCTCAGTCTGATCTGA
* * * * *
11754079 TCTTAGAC-TGGGAATGAACTATGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* ** * * **
11754143 GCCGATCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTCTGCATGCTATCGGT
65 GCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTCTGCATGCTATCAAT
* *
11754208 CCCACTACCACAACCCTCGGT-TCGAT-TGGG
130 CCCACTACCACAACCCTCAGTCT-GATCT-GA
** * *
11754238 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
11754303 CCGACCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACTCGGT-CCCCTCTG
66 CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTCTG
11754354 GTGCTGTCGA
Statistics
Matches: 223, Mismatches: 46, Indels: 12
0.79 0.16 0.04
Matches are distributed among these distances:
157 1 0.00
158 102 0.46
159 119 0.53
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTCTGCATGCTATCAATC
CCACTACCACAACCCTCAGTCTGATCTGA
Found at i:11755408 original size:26 final size:26
Alignment explanation
Indices: 11755379--11755431 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11755369 TCGGTCTGAT
*
11755379 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
11755405 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11755431 C
1 C
11755432 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11755914 original size:158 final size:158
Alignment explanation
Indices: 11755623--11756114 Score: 349
Period size: 158 Copynumber: 3.1 Consensus size: 158
11755613 GTTTAGACAA
* * * *
11755623 GGAATGAACTCCGTTTGCCTAAGCGAACCCATGAAATGAGCGTGTGGGTACTCAGTCGACCGGAG
1 GGAATGAACTCCATATGCCTAAGCGAACCCATAAAATGAGCGTGTGGGCACTCAGTCGACCGGAG
* * **
11755688 AGGTAGAATGTGAAAGTCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGTA
66 AGGCAGAATGCGAAAGTCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCACA
11755753 ACCCTCGGTTTGATCCGATCTTAGACTG
131 ACCCTCGGTTTGATCCGATCTTAGACTG
* * *
11755781 GGAATGAACTCCATATGCCTAAGTC-AACCCATAAAATGAGCGT-TGGGCGCTGAG-CAGGCCGG
1 GGAATGAACTCCATATGCCTAAG-CGAACCCATAAAATGAGCGTGTGGGCACTCAGTC-GACCGG
* * * * * * * * *
11755843 AGAGGCATAATGCGCAAGTCGGGGATCGTCTCGGTCCTTCTCTGCGTGCTGTCGGT-CTCGCTGC
64 AGAGGCAGAATGCGAAAGTCGAGGATCGGCCCGGTCC-CCCCTGCGTGCTGTCGATCCT-GCTAC
* ** * **
11755907 CACAACCCTCGATCCGA-CTGGGGCTTAGACAT-
127 CACAACCCTCGGTTTGATC-CGATCTTAGAC-TG
* * * ** * ** * *
11755939 GGAATGAACTCCCTATGCCGAAGCCAACCCA-CGAA-GCAGACGTGCGTCCACTTAG-CCAGCCG
1 GGAATGAACTCCATATGCCTAAGCGAACCCATAAAATG-AG-CGTGTGGGCACTCAGTCGA-CCG
* * * * * * * * *
11756001 GAGAGGTAGAATACGCAAG-CCAGGGATCGGCTCGGTCCCCCTTGTGTGTTG-CTGATCCTGCTG
63 GAGAGGCAGAATGCGAAAGTCGA-GGATCGGCCCGGTCCCCCCTGCGTGCTGTC-GATCCTGCTA
* * * **
11756064 TCGCAACCTTCGGTCCGATCCGATCTTAGACTG
126 CCACAACCCTCGGTTTGATCCGATCTTAGACTG
*
11756097 GGAATGAACTCCGTATGC
1 GGAATGAACTCCATATGC
11756115 TTAGACTGGA
Statistics
Matches: 261, Mismatches: 57, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
156 2 0.01
157 53 0.20
158 161 0.62
159 45 0.17
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (158 bp):
GGAATGAACTCCATATGCCTAAGCGAACCCATAAAATGAGCGTGTGGGCACTCAGTCGACCGGAG
AGGCAGAATGCGAAAGTCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCACA
ACCCTCGGTTTGATCCGATCTTAGACTG
Found at i:11756117 original size:26 final size:26
Alignment explanation
Indices: 11756088--11756140 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11756078 CCGATCCGAT
*
11756088 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
11756114 CTTAGACTGGAAATGAGCTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
11756140 C
1 C
11756141 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:11756493 original size:26 final size:26
Alignment explanation
Indices: 11756455--11756507 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11756445 CTGGTCCGAT
11756455 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11756481 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
11756507 C
1 C
11756508 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11757850 original size:26 final size:26
Alignment explanation
Indices: 11757799--11757851 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11757789 CCAGTCCGAT
*
11757799 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACATATG
*
11757825 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTACATATG
11757851 C
1 C
11757852 CCAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:11758466 original size:25 final size:25
Alignment explanation
Indices: 11758429--11758476 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
11758419 ATCTGATTTG
11758429 ATCTTAGACTGGGAATGAACTCCGT
1 ATCTTAGACTGGGAATGAACTCCGT
* *
11758454 ATCTTAGATTGGGGATGAACTCC
1 ATCTTAGACTGGGAATGAACTCC
11758477 ATATGCCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (25 bp):
ATCTTAGACTGGGAATGAACTCCGT
Found at i:11758986 original size:158 final size:158
Alignment explanation
Indices: 11758655--11759012 Score: 371
Period size: 158 Copynumber: 2.3 Consensus size: 158
11758645 TCTGTATGTC
*
11758655 GACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCTCAACCGTC
1 GACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATAAGCGTGCAGGCGCTCAACCGTC
* * * * *
11758720 CGGAGAGGCAGAACGCGTAAGTCGGGGATCGGTCCAGTCCCCTCTACATGCTGTCGATCCTGCTA
66 CGGAGAGGCAGAACGCGCAAGTCGAGGATCGGCCCAGTCCCCTCTACATGCTGCCGATCCCGCTA
*** * *
11758785 CTGTAACGCTCGATCCGGTCCGATCTTA
131 CCACAACCCTCGATCCGGTCCGAGCTTA
* * * * * * * *
11758813 GAC-TGGGAATAAACTCTGTATGCCTAAGTCAACCCATGAAATAAGCGTTCGGGCGTTGAGCCGA
1 GACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATAAGCGTGCAGGCGCTCAACCG-
* * * * * *
11758877 T-TGGAGAGGCATAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCTCTACGTGCTGCCGGTCCCG
64 TCCGGAGAGGCAGAACGCGCAAGTCGAGGATCGGCCCAGT-CCCCTCTACATGCTGCCGATCCCG
* * * ** *
11758941 CTACCACAACCCTTGGTTCGGTTGGGGCTTA
128 CTACCACAACCCTCGATCCGGTCCGAGCTTA
* *
11758972 GACATGG-ATGAACTCTCTATGCCTAAGCCAAACCACGAAAT
1 GACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAAT
11759013 GGGAGTGCGG
Statistics
Matches: 160, Mismatches: 36, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
157 1 0.01
158 112 0.70
159 46 0.29
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
GACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATAAGCGTGCAGGCGCTCAACCGTC
CGGAGAGGCAGAACGCGCAAGTCGAGGATCGGCCCAGTCCCCTCTACATGCTGCCGATCCCGCTA
CCACAACCCTCGATCCGGTCCGAGCTTA
Found at i:11759161 original size:26 final size:26
Alignment explanation
Indices: 11759125--11759177 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11759115 CTGGTCTGAT
*
11759125 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11759151 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11759177 C
1 C
11759178 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11759346 original size:26 final size:26
Alignment explanation
Indices: 11759305--11759360 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
11759295 CTGGTCTGAT
11759305 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11759331 CTTAGACATGGG-ATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
11759357 CTTA
1 CTTA
11759361 AGCCAATGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11759565 original size:680 final size:685
Alignment explanation
Indices: 11758231--11759908 Score: 1890
Period size: 680 Copynumber: 2.4 Consensus size: 685
11758221 GGGCGCTCAG
* * * * *
11758231 CGTGCTACCGATCCCGCTGCCACAACTCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCC
1 CGTGCTGCCGGTCCCGCTGCCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCC
* * * * ** * *
11758296 TATGCTTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGTCGGAGAGGCAAAATGCAC
66 TATGCCTAAGCCAACCCACGAAA-GGGAGTGCGGGTGCTCAGCCGATCGAAGAGGCAAAATGCA-
* * * * *
11758361 AAGTC-GGGATCGACCCGATCCCTCTTGCATACTGTCGATCCTACTGCCTCAACCCTCGATCTGA
129 AACTCAGGGATCGACCCGGTCCCCCTT-CATGCTGTCGATCCTGCTGCCT-AACCCTCGATCTGA
* * *
11758425 TTTGATCTTAGACTGGGAATGAACTCCGTAT-CTTAGATTGGGGATGAACTCCATATGCCTAAGT
192 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
* * ** * * *
11758489 CAATCCATGAAACGAGTATGCGGGTGCTCAGTTGGTCGGAGAGGTCGGTCGAAGAGGTAGAATGC
257 CAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGATCGGAGAGGTCGGTCGAAGAGGCAGAATGC
* * *
11758554 ACAAGCTGGGCATTGACCCGGTCCCTCCTACGTGCTGTCGATCTTGCTGTCGTAACCTTTGGTCT
322 ACAAGCTGGGCATCGACCCGGTCCCTCC-ACGTGC-GTCG---TTGC-GTCG-AACCCTCGGTCT
* * *
11758619 GATCCAATCTTAGACTAGGAATGAACTCTGTATGTCGACATGGAATGAACTCTGTATGCCTAAGC
380 GATCCAATCTTAGACTAGGAATGAACTCCGTATGTAGACATGGAATGAACTCCGTATGCCTAAGC
* * * * *
11758684 CAACCCACGAAACAAGCGTGCAGGCGCTCAACCGTCCGGAGAGGCAGAACGCGTAAGTCGGGGAT
445 CAACCCACGAAACAAGCATGCAGGCACTCAACAGTCCGGAGAGGCAGAACGCATAAGTCGGGGAC
* * * * * *
11758749 CGGTCCAGTCCCCTCTACATGCTGTCGATCCTGCTACTGTAACGCTCGATCCGGTCCGATCTTAG
510 CGGCCCAGTCCCCCCTACATGCTGTCGATCCTACTACTGCAACGCTCGATCCGATCCGATCTGAG
* * * * *
11758814 ACTGGGAATAAACTCTGTATGCCTAAGTCAACCCATGAAATAAGCGTTCGGGCGTTGAGCCGATT
575 ACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCGGGCGTTGAGCAGATC
*
11758879 GGAGAGGCATAATGC-GCAAG-TCGAGGATCGGCCCGGTCCCCCTCTA
640 GGAGAGGCATAATGCAG-AAGCT-GAGGATCGGCCCAGTCCCCCTCTA
* * * *
11758925 CGTGCTGCCGGTCCCGCTACCACAACCCTTGGTTCGGTTGGGGCTTAGACATGG-ATGAACTCTC
1 CGTGCTGCCGGTCCCGCTGCCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCC
* * * *
11758989 TATGCCTAAGCCAAACCACGAAATGGGAGTGCGGGTGCTCAGTCGACCGAAGAGGCAGAATGCAT
66 TATGCCTAAGCCAACCCACGAAA-GGGAGTGCGGGTGCTCAGCCGATCGAAGAGGCAAAATGCA-
* * *
11759054 AACTCAGGGATAGATCCGGTCCCCCTTACGA-GCTGTCGATCCTGCTGCCATAACCATCGATCTG
129 AACTCAGGGATCGACCCGGTCCCCCTT-C-ATGCTGTCGATCCTGCTGCC-TAACCCTCGATCTG
* *
11759118 GTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
191 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
* * *
11759183 TCAACCCACGAAACGAGCGTACGGGTGCTCAGTCGATCGGGGAGGTCGGTCGGAGAGGCAGAATG
256 TCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGATCGGAGAGGTCGGTCGAAGAGGCAGAATG
* * * **
11759248 CGCAAGCTGGGGATCGACCCGGT-CC-CC-C-TGC-T-G-TG-G-C-AACCCTCGGTCTGGTCTG
321 CACAAGCTGGGCATCGACCCGGTCCCTCCACGTGCGTCGTTGCGTCGAACCCTCGGTCTGATCCA
* * * *
11759303 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGGATGAACTCCGTATGCTTAAGCCAAT
386 ATCTTAGACTAGGAATGAACTCCGTATG--TAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
11759368 GCACGAAACGAA-CATGCGGGCACTCAGTCAGT-CGGAGAGGCAGAATGCATAAGTTGGGGACCG
449 CCACGAAAC-AAGCATGCAGGCACTCA-ACAGTCCGGAGAGGCAGAACGCATAAGTCGGGGACCG
* * * * * *
11759431 GCCCGGTCCCCCCTGCATGCTGTCGATCCTACT-GTGACAAC-CTTTGGTCCGATTCGATCTGAG
512 GCCCAGTCCCCCCTACATGCTGTCGATCCTACTACTG-CAACGC-TCGATCCGATCCGATCTGAG
* *
11759494 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGTTGAGTCAG-T
575 ACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCGGGCGTTGAG-CAGAT
* *
11759558 CGGAGAGGCATAATGCAGAAGCTGAGGATCGGCCCAGTCCCTCTCTG
639 CGGAGAGGCATAATGCAGAAGCTGAGGATCGGCCCAGTCCCCCTCTA
* * * *
11759605 TGTGCTGCCAGTCTCGCTGCCACAA-CCTTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCC
1 CGTGCTGCCGGTCCCGCTGCCACAACCCTT-GGTCCGGCTGGGGCTTAGACATGGAATGAACTCC
* * * *
11759669 CTATGCCTAAGCCAACCCACGAAACGGACGTGTGGGTGCTCAGCCAATCGAAGAGCCAAAATACG
65 CTATGCCTAAGCCAACCCACGAAAGGGA-GTGCGGGTGCTCAGCCGATCGAAGAGGCAAAAT--G
* * * * * * *
11759734 CAAGC-CAGGGATCGGCCCAGTCTCCCCTTCATGCTGCCGATCCTGATGCCGCAACCCTCAATCT
127 CAAACTCAGGGATCGACCCGGTC-CCCCTTCATGCTGTCGATCCTGCTGCC-TAACCCTCGATCT
* * *
11759798 GATCTGATCTTAGACTGAGAATGAACTCCGTATGGTTAGACTGGGGATGAACTCTGTATGCCTAA
190 GATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
* * ** *
11759863 GTTAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGG
255 GTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGATCGGAGAGG
11759909 CATAATGTGC
Statistics
Matches: 831, Mismatches: 133, Indels: 53
0.82 0.13 0.05
Matches are distributed among these distances:
678 39 0.05
679 7 0.01
680 263 0.32
681 207 0.25
682 8 0.01
683 5 0.01
687 1 0.00
688 1 0.00
690 3 0.00
691 1 0.00
693 66 0.08
694 123 0.15
695 107 0.13
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (685 bp):
CGTGCTGCCGGTCCCGCTGCCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCC
TATGCCTAAGCCAACCCACGAAAGGGAGTGCGGGTGCTCAGCCGATCGAAGAGGCAAAATGCAAA
CTCAGGGATCGACCCGGTCCCCCTTCATGCTGTCGATCCTGCTGCCTAACCCTCGATCTGATCTG
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGGGTGCTCAGTCGATCGGAGAGGTCGGTCGAAGAGGCAGAATGCACAA
GCTGGGCATCGACCCGGTCCCTCCACGTGCGTCGTTGCGTCGAACCCTCGGTCTGATCCAATCTT
AGACTAGGAATGAACTCCGTATGTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
ACAAGCATGCAGGCACTCAACAGTCCGGAGAGGCAGAACGCATAAGTCGGGGACCGGCCCAGTCC
CCCCTACATGCTGTCGATCCTACTACTGCAACGCTCGATCCGATCCGATCTGAGACTGGGAATAA
ACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCGGGCGTTGAGCAGATCGGAGAGGCATA
ATGCAGAAGCTGAGGATCGGCCCAGTCCCCCTCTA
Found at i:11759847 original size:26 final size:26
Alignment explanation
Indices: 11759807--11759857 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
11759797 TGATCTGATC
11759807 TTAGACTGAGAATGAACTCCGTATGG
1 TTAGACTGAGAATGAACTCCGTATGG
* * *
11759833 TTAGACTGGGGATGAACTCTGTATG
1 TTAGACTGAGAATGAACTCCGTATG
11759858 CCTAAGTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGG
Found at i:11761374 original size:597 final size:597
Alignment explanation
Indices: 11760111--11771300 Score: 19858
Period size: 597 Copynumber: 18.8 Consensus size: 597
11760101 AATTAAAATC
* *
11760111 ACACTATGAAAAACAGCAAAAAATTAAAATCACACGAAAATTGTTCGAATGTTTTTTATGCCCAG
1 ACACTATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAG
* * * *
11760176 AATTGTTCGAGTAAAAAGTCTAATATTTTGAGCTTCAAGATCCTTTCTAGGTTACGCTTAAAACT
66 AATTGTTCGAATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACT
*
11760241 GTGGAAAAATTGAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
131 GTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
* *
11760306 ATATATTCAAATTCATTTCCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGCA
196 ATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGGA
11760371 CTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTCC
261 CTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTCC
* * *
11760436 TTCTATAAACTGCTAAAACAAGTTCGCAGACATCTAAATCACATCAAGCACCAATAACAACTTCA
326 TTCTATAAACTGCTAAAACAAGTTAGCAGACAGCT-AATCACATCAAGCGCCAATAACAACTTCA
11760501 CAAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAAA
390 CAAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAAA
11760566 ATGTATCTAAAAGCCAATAAGTATGAAACACAG-GTAAAAATTAAAATCGTGCGATAATTGTGCG
455 ATGTATCTAAAAGCCAATAAGTATGAAACACAGCG-AAAAATTAAAATCGTGCGATAATTGTGCG
* * *
11760630 AATAGGTTTTACGCCCAGAATTGTTCGAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTTT
519 AATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTTT
11760695 ATAACTTACACTTG
584 ATAACTTACACTTG
*
11760709 ACACTATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATATTTTTTATGCCCAG
1 ACACTATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAG
*
11760774 AATTGTTCGAATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAGAACT
66 AATTGTTCGAATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACT
11760839 GTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
131 GTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
* *
11760904 ATACATTCAAATTCATTTTAATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGGA
196 ATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGGA
11760969 CTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTCC
261 CTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTCC
11761034 TTCTATAAACTGCTAAAACAAGTTAGCAGACAGCTAATCACATCAAGCGCCAATAACAACTTCAC
326 TTCTATAAACTGCTAAAACAAGTTAGCAGACAGCTAATCACATCAAGCGCCAATAACAACTTCAC
11761099 AAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAAAA
391 AAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAAAA
*
11761164 TGTATCTAAAAGCCAATAAGTATGAAACGCAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAA
456 TGTATCTAAAAGCCAATAAGTATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAA
11761229 TGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTTTAT
521 TGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTTTAT
11761294 AACTTACACTTG
586 AACTTACACTTG
* *
11761306 ACACTATGAAAAACAGCAAAAAATTAAAATCACACGAAAATTGTTCGAATGTTTTTTATGCCCAG
1 ACACTATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAG
* * * *
11761371 AATTGTTCGAGTAAAAAGTCTAATATTTTGAGCTTCATAATCCTTTCTAGGTTACGCTTAAAACT
66 AATTGTTCGAATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACT
* *
11761436 GTGTAAAAATTGAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
131 GTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
*
11761501 ATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAAA-AATTCTTTCATATTTTAAAGCTGGA
196 ATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGGA
*
11761565 CTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTCG
261 CTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTCC
* *
11761630 TTCTATAAAACTGCTAAAACAAGTTAGCAGACAGCTAATCACTTCAAGCGCGAATAACAACTTCA
326 TTCTAT-AAACTGCTAAAACAAGTTAGCAGACAGCTAATCACATCAAGCGCCAATAACAACTTCA
*
11761695 CAAAT-ATATCAAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAAA
390 CAAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAAA
*
11761759 GTGTATCTAAAAGCCAATAAGTATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGA
455 ATGTATCTAAAAGCCAATAAGTATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGA
* * *
11761824 ATGAGTTTTATGCCCATAATTGTTCAAAACCAAAGTCTGATG-TTTTAAACTGCAAAATCCTTTA
520 ATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTTTA
11761888 TAACTTACACTTG
585 TAACTTACACTTG
*
11761901 ACACTATGAAAAACAACAAAAAATTAAAATCACGCGAAAATAGTTCGAATGTTTTTTATGCCCAG
1 ACACTATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAG
*
11761966 AATTGTTCAAATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACT
66 AATTGTTCGAATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACT
11762031 GTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
131 GTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
* *
11762096 ATATATTCAAATTCATTTCCATTTAAAAACCCTTCTAAAACAATTCTTTCATATTTTAAAACCGG
196 ATATATTCAAATTCATTTTCATTTAAAAA-CCTTCTAAAACAATTCTTTCATATTTTAAAACTGG
*
11762161 ACTATAGAGAAAATCATATTCGAAGAAAAAC-TAAAATTTCAAAAGCATTAGGCTTTTGGTGCTC
260 ACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTC
* * *
11762225 CTTCTATAAACTGCTAAAACAAGTTCGCAGACATCTAAATCACATCAAGCACC-ATAACAACTTC
325 CTTCTATAAACTGCTAAAACAAGTTAGCAGACAGCT-AATCACATCAAGCGCCAATAACAACTTC
*
11762289 ACAAATAATATCCAAAT-CCAAGATCATTC-AATGTAATCTCACAAGTT-CTTAGAGCACCTAAA
389 ACAAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAA
11762351 AATGTA-CTAAAAG-CAAT-AGTATGAAACACAG-GTAACAAATT-AAATCGTGCGATAATTGTG
454 AATGTATCTAAAAGCCAATAAGTATGAAACACAGCG-AA-AAATTAAAATCGTGCGATAATTGTG
* * *
11762411 CGAATAGGTTTTACGCCCAGAATTGTTCGAAAA-CAAAGTCTGATGTTTTTCAACTTTC-AAATC
517 CGAATGGGTTTTATGCCCAGAATTGTTC-AAAACCAAAGTCTGATGTTTTTAAAC-TTCAAAATC
11762474 CTTTATAACTTACACTTG
580 CTTTATAACTTACACTTG
* *
11762492 ACACTATGAAAAACGACAAAAAATTAAAATCACGCGAAAATTGTTCGAATATTTTTTATGCCCAG
1 ACACTATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAG
* *
11762557 AATTGTTCGAACACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAGAACT
66 AATTGTTCGAATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACT
*
11762622 GTGGAAAAATGAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
131 GTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
* *
11762687 ATACATTCAAATTCATTTTAATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGGA
196 ATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGGA
*
11762752 CTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCGTTAGGCTTTTAGTGCTCC
261 CTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTCC
11762817 TTCTATAAACTGCTAAAACAAGTTAGCAGACAGCTAATCACATCAAGCGCCAATAACAACTTCAC
326 TTCTATAAACTGCTAAAACAAGTTAGCAGACAGCTAATCACATCAAGCGCCAATAACAACTTCAC
11762882 AAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAAAA
391 AAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAAAA
*
11762947 TGTATCTAAAAGCCAATAAGTATGAAACGCAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAA
456 TGTATCTAAAAGCCAATAAGTATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAA
*
11763012 TGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTTTAC
521 TGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTTTAT
11763077 AACTTACACTTG
586 AACTTACACTTG
* *
11763089 ACACTATGAAAAACAGCAAAAAATTAAAATCACACGAAAATTGTTCGAATGTTTTTTATGCCCAG
1 ACACTATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAG
* * * *
11763154 AATTGTTCGAGTAAAAAGTCTAATATTTTGAGCTTCAAGATCCTTTCTAGGTTACGCTTAAAACT
66 AATTGTTCGAATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACT
* *
11763219 GTGTAAAAATTGAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
131 GTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
*
11763284 ATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAGCTGGA
196 ATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGGA
*
11763349 CTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTCG
261 CTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTCC
* *
11763414 TTCTATAAAACTGCTAAAACAAGTTAGCAGACAGCTAATCACTTCAAGCGCGAATAACAACTTCA
326 TTCTAT-AAACTGCTAAAACAAGTTAGCAGACAGCTAATCACATCAAGCGCCAATAACAACTTCA
*
11763479 CAAATAATATCAAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAAA
390 CAAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAAA
**
11763544 GCGTATCTAAAAGCCAATAAGTATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGA
455 ATGTATCTAAAAGCCAATAAGTATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGA
* * *
11763609 ATGAGTTTTATGCCCATAATTGTTCAAAACCAAAGTCTGATG-TTTTAAACTGCAAAATCCTTTA
520 ATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTTTA
11763673 TAACTTACACTTG
585 TAACTTACACTTG
*
11763686 ACACTATGAAAAACAACAAAAAAATTAAAATCACGCGAAAATAGTTCGAATGTTTTTTATGCCCA
1 ACACTATGAAAAACAAC-AAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCA
*
11763751 GAATTGTTCAAATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAAC
65 GAATTGTTCGAATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAAC
11763816 TGTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTC
130 TGTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTC
* *
11763881 AATATATTCAAATTCATTTCCATTTAAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACCG
195 AATATATTCAAATTCATTTTCATTT-AAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTG
11763946 GACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCT
259 GACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCT
* * * *
11764011 CCTTCTATAAACTGCTAAAACAAGTTCGCAGACATCTAAATCATATCAAGCACCAATAACAACTT
324 CCTTCTATAAACTGCTAAAACAAGTTAGCAGACAGCT-AATCACATCAAGCGCCAATAACAACTT
11764076 CACAAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAA
388 CACAAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAA
11764141 AAATGTATCTAAAAGCCAATAAGTATGAAACACAG-GTAAAAATTAAAATCGTGCGATAATTGTG
453 AAATGTATCTAAAAGCCAATAAGTATGAAACACAGCG-AAAAATTAAAATCGTGCGATAATTGTG
* * *
11764205 CGAATAGGTTTTACGCCCAGAATTGTTCGAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCT
517 CGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCT
11764270 TTATAACTTACACTTG
582 TTATAACTTACACTTG
* *
11764286 ACACTATGAAAAACGACAAAAAATTAAAATCACGCGAAAATTGTTCGAATATTTTTTATGCCCAG
1 ACACTATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAG
* *
11764351 AATTGTTCGAACACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAGAACT
66 AATTGTTCGAATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACT
11764416 GTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
131 GTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
* *
11764481 ATACATTCAAATTCATTTTAATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGGA
196 ATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGGA
*
11764546 CTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCGTTAGGCTTTTAGTGCTCC
261 CTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTCC
11764611 TTCTATAAACTGCTAAAACAAGTTAGCAGACAGCTAATCACATCAAGCGCCAATAACAACTTCAC
326 TTCTATAAACTGCTAAAACAAGTTAGCAGACAGCTAATCACATCAAGCGCCAATAACAACTTCAC
11764676 AAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAAAA
391 AAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAAAA
*
11764741 TGTATCTAAAAGCCAATAAGTATGAAACGCAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAA
456 TGTATCTAAAAGCCAATAAGTATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAA
*
11764806 TGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTTTAC
521 TGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTTTAT
11764871 AACTTACACTTG
586 AACTTACACTTG
* *
11764883 ACACTATGAAAAACAGCAAAAAATTAAAATCACACGAAAATTGTTCGAATGTTTTTTATGCCCAG
1 ACACTATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAG
* * * *
11764948 AATTGTTCGAGTAAAAAGTCTAATATTTTGAGCTTCAAGATCCTTTCTAGGTTACGCTTAAAACT
66 AATTGTTCGAATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACT
* *
11765013 GTGTAAAAATTGAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
131 GTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
*
11765078 ATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAGCTGGA
196 ATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGG-
11765143 ACTATAGAGAAAATCATATTCGAAGAAAAACAT-AAATTTCAAAAGCATTAGGCTTTTAGTGCTC
260 ACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTC
* * *
11765207 GTTCTATAAAACTGCTAAAACAAGTTAGCAGACAGCT-ATCACTTC-AGCGCGAATAACAACTTC
325 CTTCTAT-AAACTGCTAAAACAAGTTAGCAGACAGCTAATCACATCAAGCGCCAATAACAACTTC
*
11765270 AC-AATAATATCAAAATATC-AGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAA
389 ACAAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAA
**
11765333 AGCGTATCTAAAAGCCAATAAGTATG-AACACAGCGAAAAATTAAAATCGTGCGAATAATTGTGC
454 AATGTATCTAAAAGCCAATAAGTATGAAACACAGCGAAAAATTAAAATCGTGCG-ATAATTGTGC
* * * *
11765397 GAATGAGTTTTATGCCCATAA-TGTTCAAAAACCAAAGTCTGATGTTTTAAAACTGCAAAATCCT
518 GAATGGGTTTTATGCCCAGAATTGTTC-AAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCT
11765461 TTATAACTTACACTTG
582 TTATAACTTACACTTG
* *
11765477 ACACTATGAAAAACAACAAAAAATT-AAATCACGCGAAAATAGTTCGAATGTTTTTTATGCACAG
1 ACACTATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAG
11765541 AATTGTTC-AATACAAAGTCTGAATATTTTGAGCTTCAAAATCCCTTTCTAGGTTACGCTT-AAA
66 AATTGTTCGAATACAAAGTCTG-ATATTTTGAGCTTCAAAAT-CCTTTCTAGGTTACGCTTAAAA
11765604 CTGTGG-AAAATT-AAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATT
129 CTGTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATT
11765667 CAATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTG
194 CAATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTG
11765732 GACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCT
259 GACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCT
11765797 CCTTCTATAAACTGCTAAAACAAGTTAGCAGACAGCTAATCACATCAAGCGCCAATAACAACTTC
324 CCTTCTATAAACTGCTAAAACAAGTTAGCAGACAGCTAATCACATCAAGCGCCAATAACAACTTC
11765862 ACAAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAA
389 ACAAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAA
11765927 AATGTATCTAAAAGCCAATAAGTATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCG
454 AATGTATCTAAAAGCCAATAAGTATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCG
*
11765992 AATAGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTTT
519 AATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTTT
11766057 ATAACTTACACTTG
584 ATAACTTACACTTG
*
11766071 ACACTATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATATTTTTTATGCCCAG
1 ACACTATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAG
* *
11766136 AATTGTTCGAACACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAGAACT
66 AATTGTTCGAATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACT
11766201 GTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
131 GTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
* *
11766266 ATACATTCAAATTCATTTTAATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGGA
196 ATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGGA
*
11766331 CTATAGACAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTCC
261 CTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTCC
11766396 TTCTATAAACTGCTAAAACAAGTTAGCAGACAGCTAATCACATCAAGCGCCAATAACAACTTCAC
326 TTCTATAAACTGCTAAAACAAGTTAGCAGACAGCTAATCACATCAAGCGCCAATAACAACTTCAC
11766461 AAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAAAA
391 AAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAAAA
*
11766526 TGTATCTAAAAGCCAATAAGTATGAAACGCAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAA
456 TGTATCTAAAAGCCAATAAGTATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAA
*
11766591 TGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTTTAC
521 TGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTTTAT
11766656 AACTTACACTTG
586 AACTTACACTTG
* *
11766668 ACACTATGAAAAACAGCAAAAAATTAAAATCACACGAAAATTGTTCGAATGTTTTTTATGCCCAG
1 ACACTATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAG
* * * *
11766733 AATTGTTCGAGTAAAAAGTCTAATATTTTGAGCTTCAAGATCCTTTCTAGGTTACGCTTAAAACT
66 AATTGTTCGAATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACT
* *
11766798 GTGTAAAAATTGAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
131 GTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
*
11766863 ATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAGCTGGA
196 ATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGGA
11766928 CTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTCC
261 CTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTCC
* *
11766993 GTTCTATAAAACTGCTAAAACAAGTTAGCAGACAGCTAATCACTTCAAGCGCGAATAACAACTTC
326 -TTCTAT-AAACTGCTAAAACAAGTTAGCAGACAGCTAATCACATCAAGCGCCAATAACAACTTC
*
11767058 ACAAATAATATCAAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAA
389 ACAAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAA
*
11767123 AGTGTATCTAAAAGCCAATAAGTATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCG
454 AATGTATCTAAAAGCCAATAAGTATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCG
* * *
11767188 AATGAGTTTTATGCCCATAATTGTTCAAAACCAAAGTCTGATG-TTTTAAACTGCAAAATCCTTT
519 AATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTTT
11767252 ATAACTTACACTTG
584 ATAACTTACACTTG
*
11767266 ACACTATGAAAAACAACAAAAAAATTAAAATCACGCGAAAATAGTTCGAATGTTTTTTATGCCCA
1 ACACTATGAAAAACAAC-AAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCA
*
11767331 GAATTGTTCAAATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAAC
65 GAATTGTTCGAATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAAC
11767396 TGTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTC
130 TGTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTC
*
11767461 AATATATTCAAATTCATTTCCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGG
195 AATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGG
11767526 ACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTC
260 ACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTC
* * *
11767591 CTTCTATAAACTGCTAAAACAAGTTCGCAGACATCTAAATCACATCAAGCACCAATAACAACTTC
325 CTTCTATAAACTGCTAAAACAAGTTAGCAGACAGCT-AATCACATCAAGCGCCAATAACAACTTC
11767656 ACAAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAA
389 ACAAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAA
11767721 AATGTATCTAAAAGCCAATAAGTATGAAACACAG-GTAAAAATTAAAATCGTGCGATAATTGTGC
454 AATGTATCTAAAAGCCAATAAGTATGAAACACAGCG-AAAAATTAAAATCGTGCGATAATTGTGC
*
11767785 GAATAGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTT
518 GAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTT
11767850 TATAACTTACACTTG
583 TATAACTTACACTTG
*
11767865 ACACTATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATATTTTTTATGCCCAG
1 ACACTATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAG
*
11767930 AATTGTTCGAATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAGAACT
66 AATTGTTCGAATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACT
11767995 GTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
131 GTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
* *
11768060 ATACATTCAAATTCATTTTAATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGGA
196 ATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGGA
*
11768125 CTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCGTTAGGCTTTTAGTGCTCC
261 CTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTCC
11768190 TTCTATAAACTGCTAAAACAAGTTAGCAGACAGCTAATCACATCAAGCGCCAATAACAACTTCAC
326 TTCTATAAACTGCTAAAACAAGTTAGCAGACAGCTAATCACATCAAGCGCCAATAACAACTTCAC
11768255 AAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAAAA
391 AAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAAAA
*
11768320 TGTATCTAAAAGCCAATAAGTATGAAACGCAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAA
456 TGTATCTAAAAGCCAATAAGTATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAA
*
11768385 TGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTTTAC
521 TGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTTTAT
11768450 AACTTACACTTG
586 AACTTACACTTG
* *
11768462 ACACTATGAAAAACAGCAAAAAATTAAAATCACACGAAAATTGTTCGAATGTTTTTTATGCCCAG
1 ACACTATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAG
* * * *
11768527 AATTGTTCGAGTAAAAAGTCTAATATTTTGAGCTTCAAGATCCTTTCTAGGTTACGCTTAAAACT
66 AATTGTTCGAATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACT
* *
11768592 GTGTAAAAATTGAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
131 GTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
*
11768657 ATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAGCTGGA
196 ATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGGA
*
11768722 CTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTCG
261 CTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTCC
* *
11768787 TTCTATAAAACTGCTAAAACAAGTTAGCAGACAGCTAATCACTTCAAGCGCGAATAACAACTTCA
326 TTCTAT-AAACTGCTAAAACAAGTTAGCAGACAGCTAATCACATCAAGCGCCAATAACAACTTCA
*
11768852 CAAATAATATCAAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAAA
390 CAAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAAA
*
11768917 GTGTATCTAAAAGCCAATAAGTATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGA
455 ATGTATCTAAAAGCCAATAAGTATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGA
* * *
11768982 ATGAGTTTTATGCCCATAATTGTTCAAAACCAAAGTCTGATG-TTTTAAACTGCAAAATCCTTTA
520 ATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTTTA
*
11769046 TGACTTACACTTG
585 TAACTTACACTTG
* *
11769059 ACACTATGAAAAACAACAAAAAAATTAAAATCACGCGAAAATAGTTCGAATATTTTTTATGCCCA
1 ACACTATGAAAAACAAC-AAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCA
* * *
11769124 GAATTGTTCGAACACAAAGTCTGATGTTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAGAAC
65 GAATTGTTCGAATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAAC
11769189 TGTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTC
130 TGTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTC
* *
11769254 AATACATTCAAATTCATTTTAATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGG
195 AATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGG
11769319 ACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTC
260 ACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTC
*
11769384 CTTCTATAAACTGCTAAAACAAGTTAGCAGACAGCTAATCACATCAAGCGCCAATAACAACCTCA
325 CTTCTATAAACTGCTAAAACAAGTTAGCAGACAGCTAATCACATCAAGCGCCAATAACAACTTCA
11769449 CAAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAAA
390 CAAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAAA
*
11769514 ATGTATCTAAAAGCAAATAAGTATGAAACACAG-GTAAAAATTAAAATCGTGCGATAATTGTGCG
455 ATGTATCTAAAAGCCAATAAGTATGAAACACAGCG-AAAAATTAAAATCGTGCGATAATTGTGCG
11769578 AATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTTT
519 AATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTTT
11769643 ATAACTTACACTTG
584 ATAACTTACACTTG
* * *
11769657 ACACTATGAAAAACAGCAAAAAATTAAAATCACACGAAAATTTTTCGAATGTTTTTTATGCCCAG
1 ACACTATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAG
* * * *
11769722 AATTGTTCGAGTAAAAAGTCTAATATTTTGAGCTTCAAGATCCTTTCTAGGTTACGCTTAAAACT
66 AATTGTTCGAATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACT
* * *
11769787 GTGTAAAAATTGAAAACCAATTCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
131 GTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
*
11769852 ATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAGCTGGA
196 ATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGGA
* *
11769917 CTATAGAGAAAATCATATTCGAAAAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTCG
261 CTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTCC
* *
11769982 TTCTATAAAACTGCTAAAACAAGTTAGCAGACAGCTAATCACTTCAAGCGCGAATAACAACTTCA
326 TTCTAT-AAACTGCTAAAACAAGTTAGCAGACAGCTAATCACATCAAGCGCCAATAACAACTTCA
*
11770047 CAAATAATATCAAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAAA
390 CAAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAAA
*
11770112 ATGTATCTAAAAGCCAATAAGTATGAAACACAGTGAAAAATTAAAATCGTGCGATAATTGTGCGA
455 ATGTATCTAAAAGCCAATAAGTATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGA
* * *
11770177 ATGAGTTTTATGCCCATACTTGTTCAAAACCAAAGTCTGATGTTTTTAAACTTGCAAAATCCTTT
520 ATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGATGTTTTTAAACTT-CAAAATCCTTT
11770242 ACTAACTTACACTTG
584 A-TAACTTACACTTG
*
11770257 ACACTATGAAAAACAACAAAAAAATTAAAATCACGCGAAAATAGTTCGAATG-TTTTTATGCCCA
1 ACACTATGAAAAACAAC-AAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCA
11770321 GAATTGTTC-AATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTT-AAAC
65 GAATTGTTCGAATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAAC
11770384 TGTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTC
130 TGTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTC
11770449 AATATATTCAAATTCA-TTTCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGG
195 AATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGG
11770513 ACTATAGAGAAAATCATATTCGAAG-AAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCT-
260 ACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTC
*
11770576 CTTCTATAAACTGCT-AAACAAGTTAGCAGACAGCTAATCACATCAAGCACCAATAACAACTTCA
325 CTTCTATAAACTGCTAAAACAAGTTAGCAGACAGCTAATCACATCAAGCGCCAATAACAACTTCA
11770640 CAAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCT-AAA
390 CAAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAAA
*
11770704 ATGTATCTAAAAGCCAATAAGTATGAAACACAG-GTTAAAATTAAAATCGTGCGATAATTGTGCG
455 ATGTATCTAAAAGCCAATAAGTATGAAACACAGCG-AAAAATTAAAATCGTGCGATAATTGTGCG
*
11770768 AATAGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTTT
519 AATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTTT
11770833 ATAACTTACACTTG
584 ATAACTTACACTTG
*
11770847 ACACTATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATATTTTTTATGCCCA-
1 ACACTATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAG
*
11770911 AATTGTTCGAATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAGAACT
66 AATTGTTCGAATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACT
11770976 GTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
131 GTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
* *
11771041 ATACATTCAAATTCATTTTAATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGGA
196 ATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGGA
*
11771106 CTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCGTTAGGCTTTTAGTGCTCC
261 CTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTCC
11771171 TTCTATAAACTGCTAAAACAAGTTAGCAGACAGCTAATCACATCAAGCGCCAATAACAACTTCAC
326 TTCTATAAACTGCTAAAACAAGTTAGCAGACAGCTAATCACATCAAGCGCCAATAACAACTTCAC
11771236 AAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAAAA
391 AAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAAAA
11771301 NNNNNNNNNN
Statistics
Matches: 10118, Mismatches: 401, Indels: 148
0.95 0.04 0.01
Matches are distributed among these distances:
589 41 0.00
590 305 0.03
591 606 0.06
592 241 0.02
593 298 0.03
594 441 0.04
595 543 0.05
596 421 0.04
597 3513 0.35
598 2458 0.24
599 1120 0.11
600 100 0.01
601 31 0.00
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (597 bp):
ACACTATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAG
AATTGTTCGAATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACT
GTGGAAAAATTAAAAACCAATGCTATTTGTTTCATTGTTTGAGCAGGTTTAAAACATTCGATTCA
ATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAAACAATTCTTTCATATTTTAAAACTGGA
CTATAGAGAAAATCATATTCGAAGAAAAACATAAAATTTCAAAAGCATTAGGCTTTTAGTGCTCC
TTCTATAAACTGCTAAAACAAGTTAGCAGACAGCTAATCACATCAAGCGCCAATAACAACTTCAC
AAATAATATCCAAATATCAAGATCATTCAAATGTAATCTCACAAGTTCCTTAGAGCACCTAAAAA
TGTATCTAAAAGCCAATAAGTATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAA
TGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTTTAT
AACTTACACTTG
Found at i:11761444 original size:126 final size:125
Alignment explanation
Indices: 11761184--11761444 Score: 265
Period size: 126 Copynumber: 2.1 Consensus size: 125
11761174 AGCCAATAAG
** * *** *
11761184 TATGAAACGCAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATT
1 TATGAAAAACAGCAAAAAATTAAAATCACACGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
* * * *
11761249 GTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTTTATAACTTACACTTGACAC
66 GTTCAAAA-CAAAGTCTAATGATTTTAAACTTCAAAATCCTTTATAACTTACACTTAAAAC
* **
11761310 TATGAAAAACAGCAAAAAATTAAAATCACACGAAAATTGTTCGAATGTTTTTTATGCCCAGAATT
1 TATGAAAAACAGCAAAAAATTAAAATCACACGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
* * * * * ** *
11761375 GTTCGAGTAA-AAAGTCTAAT-ATTTTGAGCTTCATAATCCTTTCTAGGTTACGCTTAAAAC
66 GTTC-A-AAACAAAGTCTAATGATTTTAAACTTCAAAATCCTTTATAACTTACACTTAAAAC
*
11761435 TGTGTAAAAA
1 TATG-AAAAA
11761445 TTGAAAACCA
Statistics
Matches: 109, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
125 33 0.30
126 73 0.67
127 1 0.01
128 2 0.02
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.32
Consensus pattern (125 bp):
TATGAAAAACAGCAAAAAATTAAAATCACACGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
GTTCAAAACAAAGTCTAATGATTTTAAACTTCAAAATCCTTTATAACTTACACTTAAAAC
Found at i:11762005 original size:125 final size:125
Alignment explanation
Indices: 11761780--11762011 Score: 313
Period size: 125 Copynumber: 1.9 Consensus size: 125
11761770 AGCCAATAAG
* * * ** * * *
11761780 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGAGTTTTATGCCCATAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATAGTGCGAATGAGTTTTATGCCCAGAATT
*
11761845 GTTCAAAACCAAAGTCTGATGTTTTAAACTGCAAAATCCTTTATAACTTACACTTGACAC
66 GTTCAAAACCAAAGTCTGATATTTTAAACTGCAAAATCCTTTATAACTTACACTTGACAC
* **
11761905 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATAGTTCGAATGTTTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATAGTGCGAATGAGTTTTATGCCCAGAATT
* * *
11761970 GTTCAAATA-CAAAGTCTGATATTTTGAGCTTCAAAATCCTTT
66 GTTCAAA-ACCAAAGTCTGATATTTTAAACTGCAAAATCCTTT
11762012 CTAGGTTACG
Statistics
Matches: 91, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
125 90 0.99
126 1 0.01
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.31
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATAGTGCGAATGAGTTTTATGCCCAGAATT
GTTCAAAACCAAAGTCTGATATTTTAAACTGCAAAATCCTTTATAACTTACACTTGACAC
Found at i:11766209 original size:126 final size:126
Alignment explanation
Indices: 11765949--11766181 Score: 326
Period size: 126 Copynumber: 1.9 Consensus size: 126
11765939 AGCCAATAAG
* * * ** *
11765949 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATAGGTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATAGGTTTTATGCCCAGAATT
*
11766014 GTTCAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTTTATAACTTACACTTGACAC
66 GTTCAAAACCAAAGTCTGATGATTTTAAACTTCAAAATCCTTTATAACTTACACTTGACAC
* **
11766075 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATATTTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATAGGTTTTATGCCCAGAATT
* * *
11766140 GTTC-GAACACAAAGTCTGAT-ATTTTGAGCTTCAAAATCCTTT
66 GTTCAAAAC-CAAAGTCTGATGATTTTAAACTTCAAAATCCTTT
11766182 CTAGGTTACG
Statistics
Matches: 93, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
125 22 0.24
126 71 0.76
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.31
Consensus pattern (126 bp):
TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATAGGTTTTATGCCCAGAATT
GTTCAAAACCAAAGTCTGATGATTTTAAACTTCAAAATCCTTTATAACTTACACTTGACAC
Found at i:11772602 original size:26 final size:26
Alignment explanation
Indices: 11772572--11772622 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
11772562 GTTGACTTAG
11772572 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * * *
11772598 GCATATGGAGTTCTTTCCCAGTCTA
1 GCATACGAAGTTCATCCCCAGTCTA
11772623 TGATCAAACT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:11774098 original size:158 final size:158
Alignment explanation
Indices: 11773576--11774101 Score: 453
Period size: 158 Copynumber: 3.3 Consensus size: 158
11773566 ATCCCCAGTC
* * * *
11773576 TAAGCATACAGAGTTCATTCTCAGTCTAAGATCAGA-CCAGACCGAGGGTTGCGATAGCAGGATC
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGA-ACCGAGGGTTGCAATAGCAGGATC
* * * * * *
11773640 AACAGCACGTA-AGGGGGACCGAGTCGA-TCCCCGACTTGTGCATTCTGCCTCTCTAGTCGGTTG
65 GACAGCACGTAGA-GGGGACC-AGGCCAGTCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGGTTG
* *
11773703 AGCGCCCGCACGCCCGTTTCATGGGTTTGCT
128 AGCGCCCGCACGCTCGTTTCATGGGTTGGCT
* * * * * * *
11773734 TAGGCATAGGGAGTTTATT-CCATGTCTAAG-TCCCAG-TCGGATCGACGGATGTGGCAGT-G--
1 TAAGCATACGGAGTTCATTCCCA-GTCTAAGAT--CAGATCGAACCGA-GG--GTTGCAATAGCA
* * * * * * *
11773793 GGATCGGCAGCACGCAGAGGGGACCGGGCC-GATCCTCAGCTTGCGCATTATGCCTCTTC-GATC
60 GGATCGACAGCACGTAGAGGGGACCAGGCCAG-TCCCCGGCTTGCGCATTCTGCCTCTCCAG-TC
* * * * * *
11773856 GGCTCAGTGCCCGAACGCTCGTTTCGTGGGTTGACT
123 GGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCT
** * * * * * * * *
11773892 TACCCATATGAAGTTCATTCCCTGTCTAAGATCAAACCGGATCAAGGGTTGCAATAGCAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCAATAGCAGGATCG
* * *
11773957 ATAGCACGTAGAGGGGACCAGGCCAGTCCCCGGCTTGCGCATTCTGCCTCTCCAGCCAGTTGAGC
66 ACAGCACGTAGAGGGGACCAGGCCAGTCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGGTTGAGC
*
11774022 GCCCGCACACTCGTTTCATGGGTTGGCT
131 GCCCGCACGCTCGTTTCATGGGTTGGCT
*
11774050 TAAGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGAACCGAGGGTTGC
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGC
11774102 GGTCGTAGGA
Statistics
Matches: 278, Mismatches: 71, Indels: 38
0.72 0.18 0.10
Matches are distributed among these distances:
155 6 0.02
156 1 0.00
157 10 0.04
158 243 0.87
159 12 0.04
160 1 0.00
161 5 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (158 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCAATAGCAGGATCG
ACAGCACGTAGAGGGGACCAGGCCAGTCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGGTTGAGC
GCCCGCACGCTCGTTTCATGGGTTGGCT
Found at i:11774411 original size:26 final size:26
Alignment explanation
Indices: 11774382--11774434 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
11774372 GTTGGCTTAG
*
11774382 GCATAAAGATTTCATT-CCATGTCTAA
1 GCATAAAGAGTTCATTCCCA-GTCTAA
**
11774408 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAAGAGTTCATTCCCAGTCTAA
11774434 G
1 G
11774435 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATAAAGAGTTCATTCCCAGTCTAA
Found at i:11775448 original size:159 final size:159
Alignment explanation
Indices: 11775055--11775608 Score: 466
Period size: 159 Copynumber: 3.4 Consensus size: 159
11775045 CTCTGGTCCA
* * * ** **
11775055 CTGAGCGCCCGTACGTTCGTTTCGTGGGTTGACTTAGGGGTACGGAGTTCATTCCACATCTAAGC
1 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* ** * * * *
11775120 CCCA-TCCGAACTGAGGGTTGTGGCAGCGGGACCGACAACACGCAGAGGGGGACCGGGTCGATCC
66 CCCAGT-CGGACCAAGGGTTGAGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGGGTTGATCC
* ***
11775184 CCGACTTGCGCATTATGCCTCTCTACCCGG
130 CCGACTTACGCATTATGCCTCTCCGGCCGG
* * * * * * *
11775214 CTCAGTGCCGGCACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATGGCCA-GTCTAAG
1 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAG
** * * * * * * *
11775278 -ATCTGACCGGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGGGGATCGGGTTGATC
65 CCCCAG-TCGGACCAAGGGTTGAGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGGGTTGATC
* * *
11775342 CCCGACTTATGCATTCTACCTCTCCGGCCGG
129 CCCGACTTACGCATTATGCCTCTCCGGCCGG
* * * *
11775373 CTGAGCGCCCACATGCTCATTTCGTGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * * *
11775438 CCCAGTCGGACTGAAGGTTGTGGTAGTAGGACCGATAACGGGATCGATAGCACGCAGAGAGGGAC
66 CCCAGTCGGAC-CAAGG--GT--T-G-AGG--C---AGCGGGATCGACAGCACGCAGAGGGGGAC
* * * * *
11775503 CGGGCTGATCCCCGGCTTACGCATTATGCCTTTTCGGTCGG
119 CGGGTTGATCCCCGACTTACGCATTATGCCTCTCCGGCCGG
* * * *
11775544 CTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCACACGGAGTTCATTCCATGTTTAAGC
1 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
11775609 ATACGGAGTT
Statistics
Matches: 307, Mismatches: 71, Indels: 22
0.77 0.18 0.05
Matches are distributed among these distances:
158 4 0.01
159 173 0.56
160 9 0.03
162 2 0.01
164 1 0.00
165 1 0.00
166 2 0.01
168 1 0.00
171 114 0.37
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
CCCAGTCGGACCAAGGGTTGAGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGGGTTGATCCC
CGACTTACGCATTATGCCTCTCCGGCCGG
Found at i:11775906 original size:159 final size:159
Alignment explanation
Indices: 11775607--11776116 Score: 517
Period size: 159 Copynumber: 3.2 Consensus size: 159
11775597 CCATGTTTAA
* * * * * *
11775607 GCATACGGAGTTCATTCC-TAGTCTAAGATCAGATCAGACC-AGACCAAGGGTTGCGGTAGTAGG
1 GCATACGGAGTTCATTCCAT-GTCTAAG--C--ACCAGACCGA-ACCGAGGGTTACGGCAGCAAG
** * * * * *
11775670 ATCGACAGCACGTAGGGGGGACTGGGCCGATCCTCGGCTCGCGCATTCTACCTCTCCGGTTGGCT
60 ATCGACAGCACACAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTTGGCT
*
11775735 GAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAG
125 GAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** *** * *
11775770 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGTGGGATTGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGTTACGGCAGCAAGATCGAC
* * *** * *
11775834 AGCACACAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCTACTGGCTTAGGG
66 AGCACACAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTTGGCTGAGCG
* * *
11775899 CCCGTACGCTCGTTTCATGGGTTGACTTAT
130 CCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * *
11775929 GTAAACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACCGAGGGTTACGGCAGCAAGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGAACCGAGGGTTACGGCAGCAAGATCGA
* ** * *
11775992 TAGCATGCAGGGGGGAACCGGGCCGATCCCCGACTTGCACATTCTGCCTCTTCGGTTGGCTGAGC
65 CAGCACACAGGGGGG-ACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTTGGCTGAGC
*
11776057 GCCCGTACGCTCGTTTCGTAGGTTGGCTTAG
129 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
11776088 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
11776117 TACGGAGTTC
Statistics
Matches: 280, Mismatches: 59, Indels: 19
0.78 0.16 0.05
Matches are distributed among these distances:
158 41 0.15
159 209 0.75
160 4 0.01
161 1 0.00
163 24 0.09
164 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGTTACGGCAGCAAGATCGAC
AGCACACAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTTGGCTGAGCGC
CCGTACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:11776117 original size:26 final size:26
Alignment explanation
Indices: 11776088--11776140 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11776078 GTTGGCTTAG
11776088 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11776114 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11776140 G
1 G
11776141 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11776856 original size:26 final size:26
Alignment explanation
Indices: 11776820--11776869 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
11776810 GTTGACTTAG
11776820 GCATACAGAGATCATGCCCAGTCTCA
1 GCATACAGAGATCATGCCCAGTCTCA
* * *
11776846 GCATACGGAGATCATTCTCAGTCT
1 GCATACAGAGATCATGCCCAGTCT
11776870 AAGATCAAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACAGAGATCATGCCCAGTCTCA
Found at i:11777320 original size:158 final size:158
Alignment explanation
Indices: 11776846--11777347 Score: 519
Period size: 158 Copynumber: 3.2 Consensus size: 158
11776836 CCCAGTCTCA
* * * *
11776846 GCATACGGAGATCATTCTCAGTCTAAGATCAAACCGGACTGAGGGTTGTGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCA
* * * * *
11776911 ACACGCAGGGGGGACTGGA-CCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAACGC
66 GCACGCAGAGGGGA-TCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* *
11776975 TTGCATGC-CTGTTTCATGGGTTGGCTTAG
130 TCGCACGCTC-GTTTCATGGGTTGGCTTAG
* * * ** ** * * *
11777004 GCATAGGGAGTTCATT-CCATGTCTAAGCCTCAG-TCAGACCAAGGGTTGCAGTAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGG
* * * * * * *
11777067 CAGCACGTAGAGGGGGACCGGGCCGATCCTTGGCTTACGCATTATGCCTCTCCGGTCGGCTCAGC
64 CAGCACGCAGA-GGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
* * * *
11777132 GCCCACACGCTCATTTCATGGGTTGACTTAG
128 GCTCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
11777163 GCATACGGAGTTCATTCCCAGTATAAGATCAGACCAGACTGAGGGTTGTGGCAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCA
* ** * * * * *
11777228 GCACGCAGAGGGGATCGAGTCGATCCCCCGCTTGGGCATTCTGCCTTTTCGGTGGGTTGAGCGCT
66 GCACGCAGAGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCT
11777293 CGCACGCTCGTTTCATGGGTTGGCTTAG
131 CGCACGCTCGTTTCATGGGTTGGCTTAG
*
11777321 GCATACGAAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
11777348 CATACGGAGT
Statistics
Matches: 270, Mismatches: 66, Indels: 16
0.77 0.19 0.05
Matches are distributed among these distances:
157 5 0.02
158 142 0.53
159 119 0.44
160 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCA
GCACGCAGAGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCT
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:11777351 original size:26 final size:26
Alignment explanation
Indices: 11777321--11777373 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11777311 GTTGGCTTAG
11777321 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
11777347 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11777373 G
1 G
11777374 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11777730 original size:26 final size:26
Alignment explanation
Indices: 11777701--11777753 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11777691 GTTGACTTAG
* *
11777701 GCATACGGAGTTGATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
**
11777727 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11777753 G
1 G
11777754 ATCAGATCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11782679 original size:27 final size:27
Alignment explanation
Indices: 11782649--11782709 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
11782639 ATCTCCATCC
* *
11782649 TTGGACTCCCGGTCATGGTCTTTCCCT
1 TTGGACTCCCGGTCACGGTCCTTCCCT
*
11782676 TTGGACTCCCGGTCACGGTCCTTCCTT
1 TTGGACTCCCGGTCACGGTCCTTCCCT
11782703 TTGGACT
1 TTGGACT
11782710 GCTTCTTTCG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.08, C:0.33, G:0.23, T:0.36
Consensus pattern (27 bp):
TTGGACTCCCGGTCACGGTCCTTCCCT
Found at i:11785159 original size:159 final size:157
Alignment explanation
Indices: 11784892--11785357 Score: 495
Period size: 159 Copynumber: 2.9 Consensus size: 157
11784882 GATTGGACCA
* * * * * * * ** *
11784892 GACTGAGGGTTGCGGCAACAGGATCGACAGCACGTAGGGGGGATCAGGCCAATCCCTGGCTGGCG
1 GACTGAGGGTTGTGGCAGCAGGACCGACAACACGCAGGGGGGACCGGGCCAATCCCCAGCTTGCG
* * * * *
11784957 CATTCTGCCTCTCCGATCGGCTAAGCGCCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGG
66 CATTCTGCCTCTCCG-GCAGCTAAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGG
11785022 AGTTCATTCCATGTCTAAGCCCCAACCG
130 AGTTCATTCCATGTCTAAGCCCCAACCG
* ** * **
11785050 GA-TCGAGGGTTGTGGCAGCGGGACCGGTAACACGCAGAGGTGGACCGGGCTGATCCCCAGCTTG
1 GACT-GAGGGTTGTGGCAGCAGGACCGACAACACGCAG-GGGGGACCGGGCCAATCCCCAGCTTG
* * * * *
11785114 CGCATTATGCCTCTCCGGCCTGCTCAGCGCCCGCACACTCGTTTCATTGGTTGACTTAGGCATAC
64 CGCATTCTGCCTCTCCGG-CAGCTAAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATAC
** **
11785179 GGAGTTCATTCC-TAGTCTAAGATCGGACCG
128 GGAGTTCATTCCAT-GTCTAAGCCCCAACCG
* * * * ** *
11785209 GACTGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGGGACTGGGCCAATCCCTGGCTTGTG
1 GACTGAGGGTTGTGGCAGCAGGACCGACAACACGCAGGGGGGACCGGGCCAATCCCCAGCTTGCG
* * * * *
11785274 CATTCTGCCTCTCCGGCAGCTGAGCACCTGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGA
66 CATTCTGCCTCTCCGGCAGCTAAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGA
11785339 GTTCATTCCATGTCTAAGC
131 GTTCATTCCATGTCTAAGC
11785358 ATACGGAGTT
Statistics
Matches: 250, Mismatches: 52, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
157 58 0.23
158 65 0.26
159 126 0.50
160 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
GACTGAGGGTTGTGGCAGCAGGACCGACAACACGCAGGGGGGACCGGGCCAATCCCCAGCTTGCG
CATTCTGCCTCTCCGGCAGCTAAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCCCCAACCG
Found at i:11786017 original size:158 final size:158
Alignment explanation
Indices: 11785757--11786065 Score: 440
Period size: 158 Copynumber: 2.0 Consensus size: 158
11785747 CAAGATCGGA
* *** *
11785757 CTGGATCGAGGGTTGCGGTAGTAGGATCGGCAGCACGTGGGGGGGACCAGGCTGATCCCCGACTT
1 CTGGATCGAGGGTTGCGGTAGTAGGATCGACAGCACACAGGGGGGACCAGGCCGATCCCCGACTT
* * * * * *
11785822 GCGCATTCTGCCTCTCTGGCCAGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
66 ACGCATTCTACCTCTCCGACCAGATGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATA
*
11785887 GGGAGTTCATTCCATGTCTAAGCCCCAG
131 GGGAGTTCATTCCATGGCTAAGCCCCAG
* * * *
11785915 CTGGATCGAGGGTTGTGGTAGTGGGATCGACAGCACACAGGGGGGATCGGGCCGATCCCC-AGCT
1 CTGGATCGAGGGTTGCGGTAGTAGGATCGACAGCACACAGGGGGGACCAGGCCGATCCCCGA-CT
* *
11785979 TACGCATTCTACCTCTCCGACCGGATGAGCGCCTGCACGCCCATTTCGTGGGTTGGCTTAGGCAT
65 TACGCATTCTACCTCTCCGACCAGATGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCAT
11786044 AGGGAGTTCATTCCATGGCTAA
130 AGGGAGTTCATTCCATGGCTAA
11786066 ACCCTAGCCG
Statistics
Matches: 132, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
157 1 0.01
158 131 0.99
ACGTcount: A:0.17, C:0.28, G:0.33, T:0.22
Consensus pattern (158 bp):
CTGGATCGAGGGTTGCGGTAGTAGGATCGACAGCACACAGGGGGGACCAGGCCGATCCCCGACTT
ACGCATTCTACCTCTCCGACCAGATGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATA
GGGAGTTCATTCCATGGCTAAGCCCCAG
Found at i:11786089 original size:158 final size:158
Alignment explanation
Indices: 11785763--11786153 Score: 428
Period size: 158 Copynumber: 2.5 Consensus size: 158
11785753 CGGACTGGAT
* * *** * *
11785763 CGAGGGTTGCGGTAGTAGGATCGGCAGCACGTGGGGGGGACCAGGCTGATCCCCGACTTGCGCAT
1 CGAGGGTTGTGGTAGTAGGATCGACAGCACACAGGGGGGACCAGGCCGATCCCCGACTTACGCAT
* * * * *
11785828 TCTGCCTCTCTGGCCAGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
66 TCTACCTCTCCGACCAGATGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGT
* * * *
11785893 TCATTCCATGTCTAAGCCCCAGCTGGAT
131 TCATTCCATGGCTAAACCCCAGCCGGAC
* * *
11785921 CGAGGGTTGTGGTAGTGGGATCGACAGCACACAGGGGGGATCGGGCCGATCCCC-AGCTTACGCA
1 CGAGGGTTGTGGTAGTAGGATCGACAGCACACAGGGGGGACCAGGCCGATCCCCGA-CTTACGCA
* *
11785985 TTCTACCTCTCCGACCGGATGAGCGCCTGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAG
65 TTCTACCTCTCCGACCAGATGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAG
*
11786050 TTCATTCCATGGCTAAACCCTAGCCGGAC
130 TTCATTCCATGGCTAAACCCCAGCCGGAC
* * * * ** * * * *
11786079 CGATGTTTGTGGCAGCT-GGA-CTAGCAGCACGTAGAGGGGGACCAGGTCGATCCTCGGCTTGCG
1 CGAGGGTTGTGGTAG-TAGGATCGA-CAGCACACAG-GGGGGACCAGGCCGATCCCCGACTTACG
*
11786142 CATTATACCTCT
63 CATTCTACCTCT
11786154 TCGGCGGGCT
Statistics
Matches: 193, Mismatches: 35, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
157 3 0.02
158 157 0.81
159 33 0.17
ACGTcount: A:0.17, C:0.28, G:0.33, T:0.22
Consensus pattern (158 bp):
CGAGGGTTGTGGTAGTAGGATCGACAGCACACAGGGGGGACCAGGCCGATCCCCGACTTACGCAT
TCTACCTCTCCGACCAGATGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGT
TCATTCCATGGCTAAACCCCAGCCGGAC
Found at i:11787159 original size:26 final size:26
Alignment explanation
Indices: 11787110--11787162 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11787100 GTTGACTTAG
*
11787110 GCATACGGAGTTCATCCCTCGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
11787136 GCATACGGAGTTTATTCCC-AGTCTAA
1 GCATACGGAGTTCA-TCCCTAGTCTAA
11787162 G
1 G
11787163 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:11787498 original size:159 final size:157
Alignment explanation
Indices: 11787136--11787550 Score: 401
Period size: 159 Copynumber: 2.6 Consensus size: 157
11787126 CCTCGTCTAA
* * *
11787136 GCATACGGAGTTTATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCT-GTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTG-TGGCAGCAGGATCGAC
*** * * * *
11787200 AGCATGTAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCGGGCAGGCTGAGCGC
64 AGCACACAGGGGGGATCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCGGGCAGGCTCAGCAC
* * * * *
11787265 CCGTACACCCGTTTCTTGGGTTGGCTTAG
129 CCGCACACCCATTTCATGGGTAGACTTAG
* * **
11787294 GCATAGGGAGTTCATT-CCATGTCTAAGCCA-CAACTAGACCGAGGGTTGTGGCAGC-GAGATCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG--ATCGACCGGACCGAGGGTTGTGGCAGCAG-GATCG
* * * * **
11787356 GCAGCACACAGAGGGGGA-CTACGCTGATCCCCAGCTTGCGCATTATGCCTGTCCGTTC-GGCTC
62 ACAGCACACAG-GGGGGATCGA-GCCGATCCCCAGCTTGCGCATTATGCCTCT-CGGGCAGGCTC
* *
11787419 AGCACCCGCACGCTCATTTCATGGGTAGACTTAG
124 AGCACCCGCACACCCATTTCATGGGTAGACTTAG
*
11787453 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
** * * *
11787518 GCACGTAGGGGGGATTGGGTCGATCCCCAGCTT
65 GCACACAGGGGGGATCGAGCCGATCCCCAGCTT
11787551 ATGCATTCTA
Statistics
Matches: 204, Mismatches: 40, Indels: 26
0.76 0.15 0.10
Matches are distributed among these distances:
157 6 0.03
158 72 0.35
159 118 0.58
160 8 0.04
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAG
CACACAGGGGGGATCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCGGGCAGGCTCAGCACCC
GCACACCCATTTCATGGGTAGACTTAG
Found at i:11787652 original size:26 final size:26
Alignment explanation
Indices: 11787615--11787667 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11787605 GTTGGCTTAG
*
11787615 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
11787641 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
11787667 G
1 G
11787668 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:11788260 original size:26 final size:26
Alignment explanation
Indices: 11788231--11788283 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11788221 GTTGACTTAG
11788231 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
11788257 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11788283 G
1 G
11788284 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11788766 original size:27 final size:27
Alignment explanation
Indices: 11788713--11788768 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
11788703 GGGTTGGCTT
* * *
11788713 AGGCATACGGATTTCATTCCATGTCTA
1 AGGCATACAGAGTTCATTCCATATCTA
11788740 AGGCATACAGAGTTCATTCCCA-ATCTA
1 AGGCATACAGAGTTCATT-CCATATCTA
11788767 AG
1 AG
11788769 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 22 0.88
28 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (27 bp):
AGGCATACAGAGTTCATTCCATATCTA
Found at i:11789134 original size:26 final size:26
Alignment explanation
Indices: 11789082--11789134 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
11789072 ATTGACTGAG
* *
11789082 GCATACGGAGTTCATCCCCGATTTAA
1 GCATACGGAGTTCATCCCAGATCTAA
*
11789108 GCATATGGAGTTCATTCCCAG-TCTAA
1 GCATACGGAGTTCA-TCCCAGATCTAA
11789134 G
1 G
11789135 ATCAGACGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAGATCTAA
Found at i:11789832 original size:301 final size:302
Alignment explanation
Indices: 11789248--11789842 Score: 709
Period size: 301 Copynumber: 2.0 Consensus size: 302
11789238 ACACGCCCAC
*
11789248 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTG
1 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTA
* * * * * * * *
11789313 TGGCAGCGGGACCGACAGTAGGTAGTGGGGGATCGGGCTGATCCTCGATTTGTGCATTATGCCTC
66 TGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGAGCCGATCCTCGACTTGCGCATTATGCCTC
* * *
11789378 TCTGGCAGGCTCAATGCCTGCACACTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCC
131 TCTGGCAGGCTCAACGCCCGCACACTCATTTCGTGGGTTAACTTACGCATACGGAGTTCATTCCC
* * * * * * **** *
11789443 AGTCTAAGATCGGACTGGACTAAGGGTTGTGATAGTAGGATCGACAGCACGCTGGGGGAGACCGG
196 AGTCTAAGATCGAACCGAACTAAGGGTTGCGACAGCAGGATCGACAGCACGCAAAAGGAGACCAG
* *
11789508 GTCAATCCCCGGCTTATGCATTCTGCCTCTCCAGATGCCCGT
261 GTCAATCCCCAGCTTACGCATTCTGCCTCTCCAGATGCCCGT
* * *
11789550 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCC-GATCGAGGGTTA
1 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTA
* * *
11789614 TGGTAGCGGGATCGACAGCACGCAGAGGGGGATCGAGCCGATCC-CTGGCTTGCGCATTATGCCT
66 TGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGAGCCGATCCTC-GACTTGCGCATTATGCCT
* * * * * * *
11789678 -TTTCG-ATCTGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCAAT
130 CTCTGGCA--GGCTCAACGCCCGCACACTCATTTCGTGGGTTAACTTACGCATACGGAGTTC-AT
* **
11789741 T-CCAGTCTAAGATCGAACCGAACCT-AGGGTTGCGGCAGCAGGATCGATGGCACGCAAAAAGG-
192 TCCCAGTCTAAGATCGAACCGAA-CTAAGGGTTGCGACAGCAGGATCGACAGCACGC-AAAAGGA
*
11789803 GACCAGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCAG
255 GACCAGGTCAATCCCCAGCTTACGCATTCTGCCTCTCCAG
11789843 CCGGCTAAGC
Statistics
Matches: 245, Mismatches: 42, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
299 1 0.00
300 4 0.02
301 183 0.75
302 57 0.23
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (302 bp):
TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTA
TGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGAGCCGATCCTCGACTTGCGCATTATGCCTC
TCTGGCAGGCTCAACGCCCGCACACTCATTTCGTGGGTTAACTTACGCATACGGAGTTCATTCCC
AGTCTAAGATCGAACCGAACTAAGGGTTGCGACAGCAGGATCGACAGCACGCAAAAGGAGACCAG
GTCAATCCCCAGCTTACGCATTCTGCCTCTCCAGATGCCCGT
Found at i:11790397 original size:157 final size:156
Alignment explanation
Indices: 11789920--11790411 Score: 517
Period size: 159 Copynumber: 3.1 Consensus size: 156
11789910 GCATACAAAA
* * ** * *
11789920 TTCATTCCCA-GTCTAAGATCGGTCTGGACCGAGGGTTGCAGTAGCAGGATCTACAGAACGTAGG
1 TTCATT-CCATGTCTAAGATCAG-CCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGTAGG
* * * ** *
11789984 GGAGGACCGAGCCAAT-CATCGGCTTGCGCATTCTACCTCTTCGGTGGGCTAAGCGCCCGCATGC
64 GG-GGACCGAGCCAATCCCT-GGCTTGCGCATTCTGCCTC-TCAGCCGGCTAAGCGCCCGCACGC
* *
11790048 TCATTTCATGGGTTGGCTTAGGCATAGGGAG
126 TCGTTTCATGGGTTGGCTTAGGCATACGGAG
** * * * *
11790079 TTCATTCCATGTCTAAGCCCTAGCCAGACTGAGGGTTGTGGCAGC-GAGACCGACAGCACGTAGC
1 TTCATTCCATGTCTAAGATC-AGCCGGACCGAGGGTTGTGGTAGCAG-GATCGACAGCACGTAG-
* ** * * * *
11790143 GGGGGACTGAGCTGATCCCCGGCTTGCGCATTATGCCTCTCAGGCCGGCTCAGCGCCCGCACACT
63 GGGGGACCGAGCCAATCCCTGGCTTGCGCATTCTGCCTCTCA-GCCGGCTAAGCGCCCGCACGCT
* *
11790208 CGTTTCATGGGTTGACTTAGGCATACGAAG
127 CGTTTCATGGGTTGGCTTAGGCATACGGAG
*
11790238 TTCATTCC-TAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGG
1 TTCATTCCAT-GTCTAAGATCAG-CCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGTAGG
* * * * *
11790302 GGGGACCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCAG-CAGCTGAGCACCCGCACGCTT
64 GGGGACCGAGCCAATCCCTGGCTTGCGCATTCTGCCTCT-CAGCCGGCTAAGCGCCCGCACGCTC
*
11790366 GTTTCGTGGGTTGGCTTAGGCATACGGAG
128 GTTTCATGGGTTGGCTTAGGCATACGGAG
11790395 TTCATTCCATGTCTAAG
1 TTCATTCCATGTCTAAG
11790412 CATGCGGAGT
Statistics
Matches: 272, Mismatches: 50, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
157 57 0.21
158 45 0.17
159 164 0.60
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
TTCATTCCATGTCTAAGATCAGCCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCACGTAGGGG
GGACCGAGCCAATCCCTGGCTTGCGCATTCTGCCTCTCAGCCGGCTAAGCGCCCGCACGCTCGTT
TCATGGGTTGGCTTAGGCATACGGAG
Found at i:11790421 original size:26 final size:26
Alignment explanation
Indices: 11790385--11790437 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11790375 GTTGGCTTAG
*
11790385 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
11790411 GCATGCGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
11790437 G
1 G
11790438 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:11791048 original size:157 final size:158
Alignment explanation
Indices: 11790843--11791174 Score: 454
Period size: 157 Copynumber: 2.1 Consensus size: 158
11790833 TAGGATCAAT
* * * * *
11790843 AGCACGCA-AGGGGACCGGGCCCATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
1 AGCACGCAGAGGGGACCGAGCCCATCCCCGACTTACGCATTCTGCCTCTCCGACCGGATGAGCAC
* *
11790907 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-CTG
66 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCG
* * * * *
11790971 GATCAAGGGTTGTGGTAGCGGGATCGGC
131 GACCAAGGGTTGTGGCAGCCGGACCAGC
* * * * *
11790999 AGCACGCAGGGGGGATCGAGCCGATCCCC-AGCTTACGCATTCTGCCTCTCTGATCGGATGAGCA
1 AGCACGCAGAGGGGACCGAGCCCATCCCCGA-CTTACGCATTCTGCCTCTCCGACCGGATGAGCA
*
11791063 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCTAGCC
65 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCC
*
11791128 GGACCGAGGGTTGTGGCAGCCGGACCAGC
130 GGACCAAGGGTTGTGGCAGCCGGACCAGC
11791157 AGCACGCAGAGGGAGACC
1 AGCACGCAGAGGG-GACC
11791175 AGGTCGATCC
Statistics
Matches: 151, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
156 9 0.06
157 103 0.68
158 36 0.24
159 3 0.02
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.19
Consensus pattern (158 bp):
AGCACGCAGAGGGGACCGAGCCCATCCCCGACTTACGCATTCTGCCTCTCCGACCGGATGAGCAC
CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCG
GACCAAGGGTTGTGGCAGCCGGACCAGC
Found at i:11792484 original size:159 final size:158
Alignment explanation
Indices: 11792168--11792561 Score: 427
Period size: 159 Copynumber: 2.5 Consensus size: 158
11792158 CCCAGTCTAA
* * * ** * *
11792168 GCATACAGAGTTCATTCCCAGTCTAAGA-TCAGATTGGA-TCGAGGGTTGCGGTAGCAGGATCGA
1 GCATACGGAGTTCATTCTCAGTCTAAGACCCA-ACCGGACT-GAGGGTTGTGGCAGCAGGATCGA
* * * * *
11792231 CAGCATGTAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCGGGCAAGCTGAGCG
64 CAGCACGTAGGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCGGGCAAGCTCAGCA
* * *
11792296 CCCGCACACTCGTTTCGTGGGTTGGCTTAG
129 CCCGCACACTCATTTCATGGGTTGACTTAG
* * * *
11792326 GGATAGGGAGTTCATTC-CATGTCTAAGCCCCAACCTGACTGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCTCA-GTCTAAGACCCAACCGGACTGAGGGTTGTGGCAGCAGGATCGAC
* * * * ** *
11792390 AGCACATAGAGGGGGACCGCGCTGATCCCCAGCTTGCGCATTATGCCTGTTCGTTC-GGCTCAGC
65 AGCACGTAG-GGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCT-CTCGGGCAAGCTCAGC
* *
11792454 ACCTGCACGCTCATTTCATGGGTTGACTTAG
128 ACCCGCACACTCATTTCATGGGTTGACTTAG
* ** *
11792485 GCATACGGAGTTCATTCTCAGTCTAAGATCGGATCGGACTGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCTCAGTCTAAGACCCAACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
11792550 GCACGTAGGGGG
66 GCACGTAGGGGG
11792562 AATCAGGCCG
Statistics
Matches: 194, Mismatches: 36, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
157 2 0.01
158 57 0.29
159 129 0.66
160 6 0.03
ACGTcount: A:0.20, C:0.25, G:0.32, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCTCAGTCTAAGACCCAACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
GCACGTAGGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTCGGGCAAGCTCAGCACC
CGCACACTCATTTCATGGGTTGACTTAG
Found at i:11792665 original size:26 final size:26
Alignment explanation
Indices: 11792629--11792681 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11792619 GTTGGCTTAG
11792629 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
11792655 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11792681 G
1 G
11792682 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11793758 original size:26 final size:26
Alignment explanation
Indices: 11793729--11793781 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11793719 GTTGGCTTAG
*
11793729 GCATACGGATTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11793755 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11793781 G
1 G
11793782 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11795285 original size:26 final size:26
Alignment explanation
Indices: 11795256--11795306 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11795246 GTTGACTTAG
11795256 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
11795282 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
11795307 GGATCGGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11799120 original size:21 final size:21
Alignment explanation
Indices: 11799094--11799156 Score: 99
Period size: 21 Copynumber: 3.0 Consensus size: 21
11799084 ATCAGACCGA
*
11799094 ACTGAGGGTTGTGGCAGCAGG
1 ACTGAGGGTTGCGGCAGCAGG
*
11799115 ACTGAGGGTTGCGGTAGCAGG
1 ACTGAGGGTTGCGGCAGCAGG
*
11799136 ACCGAGGGTTGCGGCAGCAGG
1 ACTGAGGGTTGCGGCAGCAGG
11799157 CCCAGCAGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.19, C:0.17, G:0.48, T:0.16
Consensus pattern (21 bp):
ACTGAGGGTTGCGGCAGCAGG
Found at i:11799470 original size:26 final size:26
Alignment explanation
Indices: 11799440--11799492 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11799430 GTTGACCTAG
*
11799440 GCATACAGAGTTCATCCCCAGTGTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
11799466 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11799492 G
1 G
11799493 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11799863 original size:159 final size:157
Alignment explanation
Indices: 11799466--11799852 Score: 388
Period size: 159 Copynumber: 2.4 Consensus size: 157
11799456 CCCAGTGTAA
* * *
11799466 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGA-TCGAGGGTTGCGGCAGTTGGATCGAC
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACT-GAGGGTTGCGGCAG-CGGATCGAC
* * * * * * * **
11799530 AGCATGCAGGGGGGACCGAGTCGATCTTCGGCTTACGTATTCTGCCTCTCTGGTCGGCTGAGTGC
64 AGCACGCAGGGGGGACCGAGTCAATCCTCGGCTTACGTATTATGCCTCTCAGCTCGGCTCAACGC
* *
11799595 CCGTACGCCCATTCCATGGGTTGGCTTAT
129 CCGCACGCCCATTCCATGGGTTGACTTAT
* * ** * * * *
11799624 GCGTAGGGAGTTCATTCCATA-TCTAAGCCCCAG-TCGGACCGAGGGTTGTGGTAGCGAGACCGA
1 GCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGATCGGACTGAGGGTTGCGGCAGCG-GATCGA
*
11799687 CAGCACGCAGAGGGGGACC-ACGTCAATCCTCGGCTTGCGTATTATGCCTCTTCAGCT-GGCTCA
63 CAGCACGCAG-GGGGGACCGA-GTCAATCCTCGGCTTACGTATTATGCCTC-TCAGCTCGGCTCA
** * *
11799750 ACGCCCGCACGTTCATTTCGTGGGTTGACTTAT
125 ACGCCCGCACGCCCATTCCATGGGTTGACTTAT
* * *
11799783 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGC-GGATCGACA
11799848 GCACG
65 GCACG
11799853 ATGGGAGGGA
Statistics
Matches: 181, Mismatches: 38, Indels: 19
0.76 0.16 0.08
Matches are distributed among these distances:
157 1 0.01
158 59 0.33
159 116 0.64
160 5 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCGGATCGACAG
CACGCAGGGGGGACCGAGTCAATCCTCGGCTTACGTATTATGCCTCTCAGCTCGGCTCAACGCCC
GCACGCCCATTCCATGGGTTGACTTAT
Found at i:11799978 original size:26 final size:26
Alignment explanation
Indices: 11799942--11799994 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11799932 GTTGGCTTAG
11799942 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11799968 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11799994 G
1 G
11799995 ATTTTTAGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11800365 original size:26 final size:26
Alignment explanation
Indices: 11800329--11800381 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11800319 GTTGAGTTAG
*
11800329 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
11800355 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11800381 G
1 G
11800382 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11807939 original size:26 final size:26
Alignment explanation
Indices: 11807909--11807967 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
11807899 GTTGGCTTAG
*
11807909 GCATACGTAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11807935 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11807961 -CAT-CGGA
1 GCATACGGA
11807968 CCAGACCGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 21 0.68
27 3 0.10
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11808381 original size:500 final size:498
Alignment explanation
Indices: 11807384--11808435 Score: 1271
Period size: 500 Copynumber: 2.1 Consensus size: 498
11807374 GAGCGCATGG
* * * * *
11807384 ACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCA
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCAGTCTAAGCATACGGAGTTCA
* *
11807449 TTCCCAGTCTAAGATCGGACCAGACCAAGTGTTGCGATAACAGGATCGGTAGCACACAGGGGGGA
65 TTCCCAGTCTAACATCGGACCAGACCAAGGGTTGCGAT-ACAGGATCGGTAGCACACAGGGGGGA
* * * * *
11807514 CCGGGCTAATCCCCGGCTTGCGCATTCTGCCTATCCAGCTGGCTGAGCACCCGACGCCTGTTTTA
129 CCGAGCTAATCCCCGGCTTACGCATTCTGCCTATCCAGCTGCCTGACCACCCGACGCCTGTTTCA
* * * * * **
11807579 TGGGTTGGGTTAGGCATAGGGAGTTCATTCCATGTCTAACCCTCAGTCGGACCGAGGTTGTGACA
194 TGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCGAACCCTCAGCCGGACCGAGGTAATGACA
* * * *
11807644 GCGAGACCGGCAGCACATAAAGGGGGACCAGGCCGATCCCCAGCATGCGCATTATGCCTCTTCGA
259 GCGAGACCAGCAGCACACAAAGGAGGACCAGGCCGATCCCCAGCATGCGCATTATGCCTCTCCGA
* * *
11807709 TCGGCTCAACGCCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCT
324 TCGACTCAACGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCT
* * * * *
11807774 AAGATCGGACCGGACCGAGGGTTGGGATAGCAGGTTCGACAGCACGCAGAGGGTGATCGAGCCGG
389 AAGATCGGACCGAACCGAGGGTTGAGACAGCAGGTTCGACAGCACGCACAGGGTAATCGAGCCGG
* * *
11807839 TCCTCAACTTGCGCATTCTGCCTCTCTGATCGGTTAAGCACCCGC
454 TCCCCAACTTGCACATTCTGCCTCTCCGATCGGTTAAGCACCCGC
*
11807884 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGTAGTTCATTCCATGTCTAAGCATACGGAGTTCA
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGCATACGGAGTTCA
* * *
11807949 TTCCCAGTCTAACATCGGACCAGACCGAGGGTTGCG-T-CA-G-TTGGACTTGCA-ACACGTAGG
65 TTCCCAGTCTAACATCGGACCAGACCAAGGGTTGCGATACAGGATCGG--TAGCACACA-G--GG
* * * *
11808009 GGGACCGAGTTGATCCCTGGCTTACGCATTCTGCCTCTCCAGCTGCCTGACCACCCGCACG-CTC
125 GGGACCGAGCTAATCCCCGGCTTACGCATTCTGCCTATCCAGCTGCCTGACCACCCG-ACGCCT-
* *
11808073 GTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCAGAACCC-CAGCCGGACTGAGGG
188 GTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTC-GAACCCTCAGCCGGACCGA-GG
** * * * * *
11808137 TAATGGTAGCGGGACCAGCAGCACACAGAGGAGGATCGGGCCGATCCCC-GACTTGCGCATTATG
251 TAATGACAGCGAGACCAGCAGCACACAAAGGAGGACCAGGCCGATCCCCAG-CATGCGCATTATG
* ** ** *
11808201 CCTCTCCGATCGATTCAGTGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
315 CCTCTCCGATCGACTCAACGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTAAT
* *
11808266 TCCTAGTCTAAGATCGGACCGAATCGAGGGTTGAGACAGCA-GTATCGACAGCACGCACAGGG-A
380 TCCCAGTCTAAGATCGGACCGAACCGAGGGTTGAGACAGCAGGT-TCGACAGCACGCACAGGGTA
* * * * * * *
11808329 ATCGGGCTGGTCCCCAGCTTGCACGTTTTTCCTCTCCGA-CTGGTTGAGCACCCGC
444 ATCGAGCCGGTCCCCAACTTGCACATTCTGCCTCTCCGATC-GGTTAAGCACCCGC
* *
11808384 ACGCTCGTTTTATGGGTTGGCTTAGCCATACGGAGTTCATTCCCAGTCTAAG
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAG
11808436 ATTTTGAGCC
Statistics
Matches: 469, Mismatches: 69, Indels: 28
0.83 0.12 0.05
Matches are distributed among these distances:
495 3 0.01
496 4 0.01
497 7 0.01
499 58 0.12
500 229 0.49
501 168 0.36
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (498 bp):
ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAACATCGGACCAGACCAAGGGTTGCGATACAGGATCGGTAGCACACAGGGGGGACC
GAGCTAATCCCCGGCTTACGCATTCTGCCTATCCAGCTGCCTGACCACCCGACGCCTGTTTCATG
GGTTGGCTTAGGCATACGAAGTTCATTCCATGTCGAACCCTCAGCCGGACCGAGGTAATGACAGC
GAGACCAGCAGCACACAAAGGAGGACCAGGCCGATCCCCAGCATGCGCATTATGCCTCTCCGATC
GACTCAACGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAA
GATCGGACCGAACCGAGGGTTGAGACAGCAGGTTCGACAGCACGCACAGGGTAATCGAGCCGGTC
CCCAACTTGCACATTCTGCCTCTCCGATCGGTTAAGCACCCGC
Found at i:11808901 original size:26 final size:26
Alignment explanation
Indices: 11808871--11808921 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11808861 TGACTTAGGC
11808871 ATATGGAGTTCA-TCCCTAGTCTAAGG
1 ATATGGAGTTCATTCCC-AGTCTAAGG
11808897 ATATGGAGTTCATTCCCAGTCTAAG
1 ATATGGAGTTCATTCCCAGTCTAAG
11808922 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (26 bp):
ATATGGAGTTCATTCCCAGTCTAAGG
Found at i:11809368 original size:157 final size:155
Alignment explanation
Indices: 11808901--11809395 Score: 498
Period size: 159 Copynumber: 3.1 Consensus size: 155
11808891 CTAAGGATAT
* * *
11808901 GGAGTTCATTCCCAGTCTAAGATCAAACCGGA-TCGAGGGTTGTGGCAGCAGGATCGACAGCATG
1 GGAGTTCATTCCCAGTCTAAGATC-AACCAGACT-GAGGGTTGCGGCAGCAGGATCGACAGCACG
* * * * * * * *
11808965 CAGGGGAGACCAGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGGTTGACTGAGCGCCCGTAC
64 CAGGGGGGA-C-GACCAGTCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGAAC
* *
11809030 GCTCGTTTCATGGGTTGGCTTAGGCATAG
127 GCTCGTTTCATGGGTTAGCTTAGGCATAC
* * * ** **
11809059 GGAGTTCATT-CCATGTCTAA-AGCCTAACCAGACCGAGGGTTGCGGCAGCGGGATCGGTAAAAC
1 GGAGTTCATTCCCA-GTCTAAGA-TC-AACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCAC
* * * * * *
11809122 GCAGAGGGGGACCAGGCTGATCCCC-AGCTTGCGCATTATGCCTCT-CTAGTCGGCTCAGCGCCC
63 GCAG-GGGGGACGA-CCAG-TCCCCGA-CTTGCGCATTCTGCCTCTCCGA-TCGGCTGAGCGCCC
* *
11809185 AAACGCTCGTTTCAT-GGTTTGACTTAGGCATAC
123 GAACGCTCGTTTCATGGGTTAG-CTTAGGCATAC
* * *
11809218 GGAGCTCATTCCCAGCCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATTGACAGCACGC
1 GGAGTTCATTCCCAGTCTAAGATCA-ACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* *
11809283 AGGGGGGATCGACCAGTCCCCGACTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACGC
65 AGGGGGGA-CGACCAGTCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGAACGC
*
11809348 TCGTTTCGTGGGTTAGCTTAGGCATAC
129 TCGTTTCATGGGTTAGCTTAGGCATAC
*
11809375 GGAGTTCATTCCCTGTCTAAG
1 GGAGTTCATTCCCAGTCTAAG
11809396 CATACAGAGT
Statistics
Matches: 270, Mismatches: 51, Indels: 33
0.76 0.14 0.09
Matches are distributed among these distances:
157 79 0.29
158 75 0.28
159 112 0.41
160 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (155 bp):
GGAGTTCATTCCCAGTCTAAGATCAACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
GGGGGGACGACCAGTCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGAACGCTC
GTTTCATGGGTTAGCTTAGGCATAC
Found at i:11809421 original size:26 final size:26
Alignment explanation
Indices: 11809369--11809421 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11809359 GTTAGCTTAG
* *
11809369 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
11809395 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11809421 G
1 G
11809422 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11810065 original size:158 final size:158
Alignment explanation
Indices: 11809597--11810092 Score: 583
Period size: 158 Copynumber: 3.1 Consensus size: 158
11809587 CTAAGGATAT
* * * *
11809597 GGAGTTCATTCCCA-ATCTAAGATC-GAACCAGACTGAGGGTTGTGGCAGCAGGATCAACAGCAT
1 GGAGTTCATT-CCATGTCTAAGATCAG-ACCGGACTGAGGGTTGTGGCAGCAGGATCGACAGCAC
* * * *
11809660 GCAGGGGGGACCGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAGCGCCCGTA
64 GCAGGGAGGACTGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGAA
* *
11809725 TGC-CCGTTTCGTGGGTTGGCTTAGGCATAG
129 CGCTCC-TTTCGTGGGTTGGCTTAGGCATAC
* * ** * * *
11809755 GGAGTTCATTCCATGTCTAA-ACCCCAG-CTGGACTGAGGGTTGTTCCAACGGGATCGGCAGCAC
1 GGAGTTCATTCCATGTCTAAGA--TCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGACAGCAC
* * * * *
11809818 GCAGAGAGGGATTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCC-AGTCGGCTCAGCGCCCG
64 GCAGGGA-GGACTGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGA-TCGGCTGAGCGCCCG
* * *
11809882 AACGCTCGTTTCATGGGTTGACTTAGGCATAC
127 AACGCTCCTTTCGTGGGTTGGCTTAGGCATAC
* * *
11809914 GGAGCTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATTGACAGCACG
1 GGAGTTCATT-CCATGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACG
* * * *
11809978 CAGGGAGGACTGGGTCGGTCCCCGGCTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCTCGCAC
65 CAGGGAGGACTGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGAAC
11810043 GCTCCTTTCGTGGGTTGGCTTAGGCATAC
130 GCTCCTTTCGTGGGTTGGCTTAGGCATAC
11810072 GGAGTTCATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
11810093 CATACAGAGT
Statistics
Matches: 278, Mismatches: 48, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
157 7 0.03
158 142 0.51
159 123 0.44
160 6 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
GGAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGC
AGGGAGGACTGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGAACG
CTCCTTTCGTGGGTTGGCTTAGGCATAC
Found at i:11810116 original size:26 final size:26
Alignment explanation
Indices: 11810066--11810118 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11810056 GTTGGCTTAG
* *
11810066 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATCTCTAA
11810092 GCATACAGAGTTCATTCCCA-CTCTAA
1 GCATACAGAGTTCATT-CCATCTCTAA
11810118 G
1 G
11810119 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATCTCTAA
Found at i:11810238 original size:184 final size:182
Alignment explanation
Indices: 11809908--11810841 Score: 809
Period size: 184 Copynumber: 5.0 Consensus size: 182
11809898 GTTGACTTAG
* * * * * * *
11809908 GCATACGGAGCTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATTGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGCTTGCGACAGCAGGATCGACA
* * * * * * *
11809973 GCACGCAGGGAGGACTGGGTCGGTCCCCGGCTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCT
66 G-ACACAGGGGGGACTGGGCCGAT-CCCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGCC
* *
11810038 CGCACGCTCCTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
129 CGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * *
11810092 GCATACAGAGTTCATTCCCACTCTAAGATCGGACCGGA-CTGAGGCTTACGACAGTAGGATCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGCTTGCGACAGCAGGATCGAC
* * * ** *
11810156 AGTACACAGGGGGGACTGAGCCGATCCTCGACTTGCGTATTCTACCTCTCCGACCTTCTGACCGC
65 AG-ACACAGGGGGGACTGGGCCGATCC-CGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGC
* * *
11810221 CCGTACGCTGGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAA
128 CCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAA
* * * * * *
11810276 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGTGGCAGCAGGATCGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGCTTGCGACAGCAGGATCGACA
* * * * *
11810341 -ACACGTAGGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCTGGCCGACTGAGCGC
66 GACAC--AGGGGGGACTGGGCCGATCCC-GGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGC
* * *
11810405 CCGTACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
128 CCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
11810460 GCATAAAGAGTTCATTCCTAGTCTAAGATCAGACTGGATCGAGGCTTGCAACAGTAGGACCAGCC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGCTTG---C-----GA-CA---
* * * *
11810525 GCAGGATCGACAG-CACGTAGGGGGGACCGGGTCGATCCCTGGCTTGTGCATTCTCCCTCTCCGA
54 GCAGGATCGACAGACAC--AGGGGGGACTGGGCCGATCCC-GGCTTGCGCATTCTACCTCTCCGA
* * * * * * * * * *
11810589 CCGACTAAGCGTCCGCATGCTCGTTTCCTGGTTTGACTTAGGCATATGGAGTTCATCCCCA-ATC
116 CCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTC
11810653 TAA
180 TAA
* * ** * * ** **
11810656 GCATAC-GAAGTTCATTCCCAGTCTAATATCAAACTAGACCGAGGGTTGCGGTAGCAGGATCGGT
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGCTTGCGACAGCAGGATCGAC
* * ** * * * *
11810720 AGCACGCAGGGGGGACTGGGCCGATCTTCGGCTTATGCAATCTACCTTTCTGGCCGACTGAGCGC
65 AG-ACACAGGGGGGACTGGGCCGATC-CCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGC
* * * * ** *
11810785 CCGCACGCCCATTTCATGGGTTGGCTTAGGCATTGGGAGTTCATTCCATATCTAA
128 CCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
11810840 GC
1 GC
11810842 CCCAGCCAGA
Statistics
Matches: 609, Mismatches: 114, Indels: 54
0.78 0.15 0.07
Matches are distributed among these distances:
182 4 0.01
183 10 0.02
184 432 0.71
185 5 0.01
186 2 0.00
187 1 0.00
188 1 0.00
192 1 0.00
193 3 0.00
195 1 0.00
196 146 0.24
197 3 0.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (182 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGCTTGCGACAGCAGGATCGACA
GACACAGGGGGGACTGGGCCGATCCCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGCCCG
TACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:11810279 original size:26 final size:26
Alignment explanation
Indices: 11810250--11810302 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11810240 GTTGACTTAG
11810250 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
11810276 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11810302 G
1 G
11810303 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11810435 original size:685 final size:693
Alignment explanation
Indices: 11808838--11810459 Score: 2332
Period size: 696 Copynumber: 2.3 Consensus size: 693
11808828 TTAGCTGAGT
* * * *
11808838 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCTAGTCTAAGGATATGG
1 GCCCGTACGCTGGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGGATATGG
11808903 AGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCATGCAG
66 AGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCATGCAG
* * * * *
11808968 GGGAGACCAGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGGTTGACTGAGCGCCCGTACGCT
131 GGGGGACCGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGACTGAGCGCCCGTACGCC
* *
11809033 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAAGCCTAACCAGACCGAGGG
196 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAACCAGACCGAGGG
* * * * *
11809098 TTGCGGCAGCGGGATCGGTAAAACGCAGAGGGGGACCAGGCTGATCCCCAGCTTGCGCATTATGC
261 TTGCGCCAACGGGATCGGCAAAACGCAGAGAGGGACCAGGCCGATCCCCAGCTTGCGCATTATGC
* *
11809163 CTCTCTAGTCGGCTCAGCGCCCAAACGCTCGTTTCATGGTTTGACTTAGGCATACGGAGCTCATT
326 CTCTCCAGTCGGCTCAGCGCCCAAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATT
* *
11809228 CCCAGCCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATTGACAGCACGCAGGGGGGATC
391 CCCAGCCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATTGACAGCACGCAGGGAGGATC
* * *
11809293 GACCAGTCCCCGACTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACGCTCGTTTCGTG
456 GACCAGTCCCCGACTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGCTCCTTTCGTG
* * *
11809358 GGTTAGCTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATACAGAGTTCATTCCCAGTTTAAGA
521 GGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCACTCTAAGA
* *
11809423 TCAGACCAGACCAAGCCTTGCGGTAGCAGGACTAGCAGCAGGATCGGTAGCATGCAGGGGCGATC
586 TCAGACCAGACCAAGCCTTACGGTAGCAGGA-TAGCAGCA-GATCAGTAGCA-GCAGGGGCGATC
* * *
11809488 GAGTCGATCCCCGGCTTGCCTATTCTACCTCTCCAGCCTTCTGGCC
648 GAGCCGATCCCCGACTTGCCTATTCTACCTCTCCAGCCTTCTGACC
11809534 GCCCGTACGCTGGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGGATATGG
1 GCCCGTACGCTGGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGGATATGG
* * * *
11809599 AGTTCATTCCCAATCTAAGATCGAACCAGA-CTGAGGGTTGTGGCAGCAGGATCAACAGCATGCA
66 AGTTCATTCCCAGTCTAAGATCAAACCGGATC-GAGGGTTGTGGCAGCAGGATCGACAGCATGCA
* * *
11809663 GGGGGGACCGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAGCGCCCGTATGC
130 GGGGGGACCGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGACTGAGCGCCCGTACGC
* * ** *
11809728 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCTGGACTGAGG
195 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAACCAGACCGAGG
** ** *** *
11809793 GTTGTTCCAACGGGATCGGCAGCACGCAGAGAGGGATTGGGCCGATCCCCGGCTTGCGCATTATG
260 GTTGCGCCAACGGGATCGGCAAAACGCAGAGAGGGACCAGGCCGATCCCCAGCTTGCGCATTATG
*
11809858 CCTCTCCAGTCGGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGCTCAT
325 CCTCTCCAGTCGGCTCAGCGCCCAAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGCTCAT
* * *
11809923 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATTGACAGCACGCAGGGAGGAC
390 TCCCAGCCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATTGACAGCACGCAGGGAGGA-
* ** * * *
11809988 TGGGTCGGTCCCCGGCTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCTCGCACGCTCCTTTCG
454 TCGACCAGTCCCCGACTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGCTCCTTTCG
*
11810053 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCACTCTAA
519 TGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCACTCTAA
* * ** * * * *
11810118 GATCGGACCGGACTGAGGCTTAC-G-A-CA-G-TAGGATC-GA-CAGTA-CA-CAGGGGGGA-CT
584 GATCAGACCAGACCAAGCCTTACGGTAGCAGGATAGCAGCAGATCAGTAGCAGCAGGGGCGATC-
* *
11810173 GAGCCGATCCTCGACTTGCGTATTCTACCTCTCC-GACCTTCTGACC
648 GAGCCGATCCCCGACTTGCCTATTCTACCTCTCCAG-CCTTCTGACC
* * *
11810219 GCCCGTACGCTGGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
1 GCCCGTACGCTGGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGGATATGG
* * * *
11810284 AGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGTGGCAGCAGGATCGGCAACACGTAG
66 AGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCATGCAG
* * * *
11810349 GGGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGTACGCC
131 GGGGGACCGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGACTGAGCGCCCGTACGCC
* *
11810414 CGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
196 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
11810460 GCATAAAGAG
Statistics
Matches: 828, Mismatches: 93, Indels: 21
0.88 0.10 0.02
Matches are distributed among these distances:
684 2 0.00
685 265 0.32
686 1 0.00
687 2 0.00
688 4 0.00
689 2 0.00
691 5 0.01
693 1 0.00
694 2 0.00
695 2 0.00
696 408 0.49
697 134 0.16
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (693 bp):
GCCCGTACGCTGGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGGATATGG
AGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCATGCAG
GGGGGACCGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGACTGAGCGCCCGTACGCC
CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAACCAGACCGAGGG
TTGCGCCAACGGGATCGGCAAAACGCAGAGAGGGACCAGGCCGATCCCCAGCTTGCGCATTATGC
CTCTCCAGTCGGCTCAGCGCCCAAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATT
CCCAGCCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATTGACAGCACGCAGGGAGGATC
GACCAGTCCCCGACTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGCTCCTTTCGTG
GGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCACTCTAAGA
TCAGACCAGACCAAGCCTTACGGTAGCAGGATAGCAGCAGATCAGTAGCAGCAGGGGCGATCGAG
CCGATCCCCGACTTGCCTATTCTACCTCTCCAGCCTTCTGACC
Found at i:11810670 original size:196 final size:196
Alignment explanation
Indices: 11810329--11810704 Score: 477
Period size: 196 Copynumber: 1.9 Consensus size: 196
11810319 GGTTGTGGCA
* * * *
11810329 GCAGGATCGGCAACACGTAGGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCTGGC
1 GCAGGATCGACAACACGTAGGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTCCCTCTCCGAC
* * * * *
11810394 CGACTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
66 CGACTAAGCGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATATCTA
* * * *
11810459 AGCATAAAGAGTTCATTCCTAGTCTAAGATCAGACTGGATCGAGGCTTGCAACAGTAGGACCAGC
131 AGCATAAAGAGTTCATTCCCAGTCTAAGATCAAACTAGACCGAGGCTTGCAACAGTAGGACCAGC
11810524 C
196 C
* * **
11810525 GCAGGATCGACAGCACGTAGGGGGGACCGGGTCGATCCCTGGCTTGTGCATTCTCCCTCTCCGAC
1 GCAGGATCGACAACACGTAGGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTCCCTCTCCGAC
* * * * * * *
11810590 CGACTAAGCGTCCGCATGCTCGTTTCCTGGTTTGACTTAGGCATATGGAGTTCATCCCCA-ATCT
66 CGACTAAGCGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATACGAAGTTCAT-CCCATATCT
* * *
11810654 AAGCAT-ACGAAGTTCATTCCCAGTCTAATATCAAACTAGACCGAGGGTTGC
130 AAGCATAAAG-AGTTCATTCCCAGTCTAAGATCAAACTAGACCGAGGCTTGC
11810705 GGTAGCAGGA
Statistics
Matches: 151, Mismatches: 27, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
195 2 0.01
196 146 0.97
197 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.24
Consensus pattern (196 bp):
GCAGGATCGACAACACGTAGGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTCCCTCTCCGAC
CGACTAAGCGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCATATCTA
AGCATAAAGAGTTCATTCCCAGTCTAAGATCAAACTAGACCGAGGCTTGCAACAGTAGGACCAGC
C
Found at i:11810703 original size:380 final size:367
Alignment explanation
Indices: 11809908--11810841 Score: 1109
Period size: 380 Copynumber: 2.5 Consensus size: 367
11809898 GTTGACTTAG
* * * *
11809908 GCATACGGAGCTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGTGGCAGCAGGATCGGCA
* * * * * * ** * *
11809973 GCACGCAGGGAGGACTGGGTCGGTCCCCGGCTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCT
66 GCACGCAGGGGGGACTGGGCCGATCCCTGGCTTACGCATTCTACCTCTCTGGCCGACTGAGCGCC
* *
11810038 CGCACGCTCCTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGT
131 CGCACGC-CCTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAAGAGT
* * *
11810103 TCATTCCCACTCTAAGATCGGACCGGACTGAGGCTTACGACAGTAGGATCGACAGTACACAGGGG
195 TCATTCCCACTCTAAGATCAGACCGGACTGAGGCTTACGACAGCAGGATCGACAGCACACAGGGG
* * ** * * *
11810168 GGACTGAGCCGATCCTCGACTTGCGTATTCTACCTCTCCGACCTTCTGACCGCCCGTACGCTGGT
260 GGACCGAGCCGATCCTCGACTTGCGCATTCTACCTCTCCGACCGACTAACCGCCCGCACGCTCGT
* *
11810233 TTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
325 TTCCTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAA
*
11810276 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGTGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGTGGCAGCAGGATCGGCA
* * * *
11810341 ACACGTAGGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCTGGCCGACTGAGCGCC
66 GCACGCAGGGGGGACTGGGCCGATCCCTGGCTTACGCATTCTACCTCTCTGGCCGACTGAGCGCC
* *
11810406 CGTACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATAAAGAGT
131 CGCACGCCC-TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAAGAGT
* * *
11810471 TCATTCCTAGTCTAAGATCAGACTGGA-TCGAGGCTTGCAACAGTAGGACCAGCCGCAGGATCGA
195 TCATTCCCACTCTAAGATCAGACCGGACT-GAGGCTT---AC-----GA-CA---GCAGGATCGA
** * * * * * *
11810535 CAGCACGTAGGGGGGACCGGGTCGATCC-CTGGCTTGTGCATTCTCCCTCTCCGACCGACTAAGC
247 CAGCACACAGGGGGGACCGAGCCGATCCTC-GACTTGCGCATTCTACCTCTCCGACCGACTAACC
* * * *
11810599 GTCCGCATGCTCGTTTCCTGGTTTGACTTAGGCATATGGAGTTCATCCCCAATCTAA
311 GCCCGCACGCTCGTTTCCTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAA
* * ** * * *
11810656 GCATACGAAGTTCATTCCCAGTCTAATATCAAACTAGACCGAGGGTTGCGGTAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGTGGCAGCAGGATCGGCA
* * * *
11810721 GCACGCAGGGGGGACTGGGCCGAT-CTTCGGCTTATGCAATCTACCTTTCTGGCCGACTGAGCGC
66 GCACGCAGGGGGGACTGGGCCGATCCCT-GGCTTACGCATTCTACCTCTCTGGCCGACTGAGCGC
** *
11810785 CCGCACGCCCATTTCATGGGTTGGCTTAGGCATTGGGAGTTCATTCCATATCTAAGC
130 CCGCACGCCC-TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
11810842 CCCAGCCAGA
Statistics
Matches: 478, Mismatches: 72, Indels: 20
0.84 0.13 0.04
Matches are distributed among these distances:
367 3 0.01
368 199 0.42
371 2 0.00
376 2 0.00
377 2 0.00
379 3 0.01
380 267 0.56
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (367 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGTGGCAGCAGGATCGGCA
GCACGCAGGGGGGACTGGGCCGATCCCTGGCTTACGCATTCTACCTCTCTGGCCGACTGAGCGCC
CGCACGCCCTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAAGAGTT
CATTCCCACTCTAAGATCAGACCGGACTGAGGCTTACGACAGCAGGATCGACAGCACACAGGGGG
GACCGAGCCGATCCTCGACTTGCGCATTCTACCTCTCCGACCGACTAACCGCCCGCACGCTCGTT
TCCTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAA
Found at i:11811009 original size:26 final size:26
Alignment explanation
Indices: 11810973--11811025 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11810963 GTTAGCTTAG
11810973 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11810999 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11811025 G
1 G
11811026 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11811725 original size:26 final size:26
Alignment explanation
Indices: 11811695--11811747 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11811685 GTTGACTTAG
11811695 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
11811721 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11811747 G
1 G
11811748 AACGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11812039 original size:159 final size:157
Alignment explanation
Indices: 11811721--11812064 Score: 383
Period size: 159 Copynumber: 2.2 Consensus size: 157
11811711 CCCAGTCTAA
* * * * * * * ** *
11811721 GCATACGGAGTTCATTCCCA-GTCTAAGAACGGATCAGACTGAGGGCTACGACAGCAGGATCGAC
1 GCATACGAAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGTAGGATCGAC
*
11811785 AGCACGCAGGGGGGATCAGGTCGATCCTCGAATTACGCATTCTGCCTCTCTGACCGGCTGAGCGC
65 AGCACGCAGGGGGGATCAGGTCGATCCTCGAATTACGCATTCTGCCTCTCGGACCGGCTGAGCGC
* *
11811850 CCGTACGCCTGTTTCGTGGGTTGGCTTAG
130 CCG-ACACCTATTTCGTGGGTTGGCTTAG
* * *
11811879 GCGTAGGGAGTTCATT-CATAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGTAGGATCGAC
1 GCATACGAAGTTCATTCCAT-GTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGTAGGATCGAC
* * ** *
11811943 AGCACGCAGGGGGAGATCGGGTCGGTCC-CTGGCTTGCGCATTCTGCCTCTTCGGA-CGGCTGAG
65 AGCACGCAGGGGG-GATCAGGTCGATCCTC-GAATTACGCATTCTGCCTC-TCGGACCGGCTGAG
*
11812006 TGCCC-ACACACTCATTTCGTGGGTTGGCTTAG
127 CGCCCGACAC-CT-ATTTCGTGGGTTGGCTTAG
11812038 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGAAGTTCATTCCATGTCTAAG
11812065 CATACAAAGT
Statistics
Matches: 155, Mismatches: 23, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
156 2 0.01
157 3 0.02
158 65 0.42
159 78 0.50
160 7 0.05
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGTAGGATCGACA
GCACGCAGGGGGGATCAGGTCGATCCTCGAATTACGCATTCTGCCTCTCGGACCGGCTGAGCGCC
CGACACCTATTTCGTGGGTTGGCTTAG
Found at i:11812074 original size:26 final size:26
Alignment explanation
Indices: 11812038--11812090 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11812028 GTTGGCTTAG
*
11812038 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
11812064 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
11812090 G
1 G
11812091 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:11813811 original size:26 final size:26
Alignment explanation
Indices: 11813774--11813826 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11813764 GTTGACTTAG
*
11813774 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* *
11813800 GCATACAAAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
11813826 G
1 G
11813827 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:11814791 original size:159 final size:159
Alignment explanation
Indices: 11814387--11814932 Score: 458
Period size: 159 Copynumber: 3.4 Consensus size: 159
11814377 CCTTTCTGGT
* * * * *
11814387 CGGCTGAGCGTCC-GCACGCTCGTTTCGGGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
1 CGGCTGAGCG-CCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCT
*** * * ** * ** * * * *
11814451 AAGCAAATAGATCGGACCAAGGGTTACGGCAGCAGGATCGGTAGCATGC-AGGGGGGACCGGGTC
65 AAGC-CCCAG-TCAGACCTAGGGTTATAGCAGCAGGACCGACAACACGCAAAGGGGGACCGGGCC
* * ** * *
11814515 GATCCCCGACTTACGTATTCTGCCTCTACGGC
128 AATCCCCGACTTGCACATTATGCCTCTCCGGC
* *
11814547 CGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC-ATGTCT
1 CGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTA-GTCT
* * ** *
11814611 AAGCCCCAGTCAGACCTAGGGTTATGGTAGTGGGACCGACAACACGCAAAGGGGGACCGTGCCAA
65 AAGCCCCAGTCAGACCTAGGGTTATAGCAGCAGGACCGACAACACGCAAAGGGGGACCGGGCCAA
*
11814676 TCCCTGACTTGCACATTATGCCTCTCCGGC
130 TCCCCGACTTGCACATTATGCCTCTCCGGC
* * * * * *
11814706 CAGCTCAGCGCCTACATGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTA
1 CGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTA
** * * ** * * * ** *
11814771 AG-ATCGGAT-AGGA-CTGAGGGTTGTAGCAGCAGGATTGATAGCACGGAGGGGGGGACTGGGCC
66 AGCCCCAG-TCA-GACCT-AGGGTTATAGCAGCAGGACCGACAACACGCAAAGGGGGACCGGGCC
* * * * *
11814833 GATCCCCGGCTTGCGCATTCTGCCTCTCCGGT
128 AATCCCCGACTTGCACATTATGCCTCTCCGGC
*
11814865 CGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATA-TCT
1 CGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC-TAGTCT
11814929 AAGC
65 AAGC
11814933 ATACGGAGTT
Statistics
Matches: 311, Mismatches: 66, Indels: 18
0.79 0.17 0.05
Matches are distributed among these distances:
158 32 0.10
159 217 0.70
160 62 0.20
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
CGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTA
AGCCCCAGTCAGACCTAGGGTTATAGCAGCAGGACCGACAACACGCAAAGGGGGACCGGGCCAAT
CCCCGACTTGCACATTATGCCTCTCCGGC
Found at i:11815316 original size:26 final size:26
Alignment explanation
Indices: 11815286--11815338 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11815276 ATTGACTTAG
*
11815286 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
11815312 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11815338 G
1 G
11815339 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11815784 original size:158 final size:159
Alignment explanation
Indices: 11815450--11815811 Score: 398
Period size: 158 Copynumber: 2.3 Consensus size: 159
11815440 CGCACGCCCA
* *
11815450 TTTCATGGGTTGGCTTAGGCATA-GAGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGT
1 TTTCATGGGTTGGCTTAGGCATACG-GAGTTCATTCCATGTCTAAGACCTAGCCGGACCGAAGGT
** * *
11815514 TGTAGCAGTGGGATCGGCAGCACACAATGAGGGACCGAGCCGATCCCTGGCTTGTGCATTATGCC
65 TGTAGCAGCAGGATCGGCAGCACACAATGAGGGACCGAGCCGATCCCTGGCTTGCGCATTATACC
*
11815579 TCTCCGGCCGGCTTAGCACCCGAAAGCTCG
130 TCTCCGGCCGGATTAGCACCCGAAAGCTCG
* * * *
11815609 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACTGGACCGAAGG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCTAG-CCGGACCGAAGG
** * ** * *
11815672 TTGT-GACAGCAGGAT-GGACAGCACGTAA-GAGGGACCGAGCCAGTTTTC-GGCTTGCGTATTC
64 TTGTAG-CAGCAGGATCGG-CAGCACACAATGAGGGACCGAGCC-GATCCCTGGCTTGCGCATTA
* * * * *
11815733 TACCTCTCTGGTC-GATTGAGCACCCGCACGTTCG
126 TACCTCTCCGGCCGGATT-AGCACCCGAAAGCTCG
11815767 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
11815812 CATACGGAGT
Statistics
Matches: 170, Mismatches: 25, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
157 6 0.04
158 90 0.53
159 70 0.41
160 4 0.02
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (159 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCTAGCCGGACCGAAGGTT
GTAGCAGCAGGATCGGCAGCACACAATGAGGGACCGAGCCGATCCCTGGCTTGCGCATTATACCT
CTCCGGCCGGATTAGCACCCGAAAGCTCG
Found at i:11815815 original size:26 final size:26
Alignment explanation
Indices: 11815785--11815837 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11815775 GTTGGCTTAG
11815785 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11815811 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11815837 G
1 G
11815838 ATCGAACAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11816107 original size:184 final size:184
Alignment explanation
Indices: 11815749--11816180 Score: 458
Period size: 184 Copynumber: 2.3 Consensus size: 184
11815739 TCTGGTCGAT
* * **
11815749 TGAGCACCCGCACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCA
* * * * *
11815814 TACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTGCAATAGCAGGATCGGTAGCA
66 CACGGAGTTCATTCACAGTCTAAGATCGAACAGGACCGAGGGTTACAACAGCAGGATCGGTAACA
* * * * *
11815879 CGCAGGGGGGATCAGGCCTATCCCCGGCTTGCGCATTTTGCCTCTCCAGCCGGC
131 CGCACGGAGGATCAGGCCTATCCCCGACTTACGCATTCTGCCTCTCCAGCCGGC
* * *
11815933 TGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCTTACAAAGTTCATCTCCA-GTCTAAGC
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCAT-TCCATGTCTAAGC
*** *
11815997 ACACGGAGTTCATTCACAGTCTAAGATCGAACCA-GACCGAGGGTTATGGCAGCAGGATTGGTAA
65 ACACGGAGTTCATTCACAGTCTAAGATCGAA-CAGGACCGAGGGTTACAACAGCAGGATCGGTAA
* * * * * * * *
11816061 TACGTACGGAGGA-CCGTGCCGT-TCCTCGACTTACGTATTCTGCCTCTCCGGTCGGT
129 CACGCACGGAGGATCAG-GCC-TATCCCCGACTTACGCATTCTGCCTCTCCAGCCGGC
* * * * *** * *
11816117 TGAGCGCCCGCACACCCGTTCCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATATCTAAGC
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGC
11816181 CCTAGCTGGA
Statistics
Matches: 202, Mismatches: 41, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
183 6 0.03
184 189 0.94
185 7 0.03
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.25
Consensus pattern (184 bp):
TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCA
CACGGAGTTCATTCACAGTCTAAGATCGAACAGGACCGAGGGTTACAACAGCAGGATCGGTAACA
CGCACGGAGGATCAGGCCTATCCCCGACTTACGCATTCTGCCTCTCCAGCCGGC
Found at i:11816771 original size:512 final size:512
Alignment explanation
Indices: 11815819--11817043 Score: 1247
Period size: 512 Copynumber: 2.4 Consensus size: 512
11815809 AAGCATACGG
* ** *** * ** *
11815819 AGTTCATTCCCAGTCTAAGATC-GAACAGGACCGAGGGTTGCAATAGCAGGATCGGTAGCACGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCA-GACCGAGCATTGCGGCAACAGGATCGACAGCACACA
* * * ** * * * *
11815883 GGGGGGATCAGGCCTATCCCCGGCTTGCGCATTTTG-CCTCTCC-AGCCGGCTGAGCGCCTGCAC
65 GGGGGGACCGGGTCGGTCCCCGACTTACGCA-TTCGACCTCTCCGA-CTGGCTGAGCGCCTG-AC
* * * * * * * *
11815946 GCTCGTTTCATGGGTTGACTTAGGCTTACAAAGTTCATCTCCAGTCTAAGCACACGGAGTTCATT
127 GCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATT
* * * * * * * * * **
11816011 CACAGTCTAAGATCGAACCAGACCGAGGGTTATGGCAGCAGGA-TTG--G-TA-AT----A-CGT
192 CCCAGTCTAAGATTGGATCGGACCGAAGGTTACGGCAGCAGGACTAGCAGCAAGATCGGCAGCAC
* ** * * * * *
11816066 AC--GGAGGACCGTGCCGTTCCTCGACTTACGTATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCA
257 ACAGGGGGGACCAAGCCGATCCCCGGCTTGCGTATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCA
* * * *
11816129 CACCCGTTCCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATATCTAAGCCCTAGCTGGACCG
322 CACCCGTTCCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATATCTAAGCCCCAGCTGGACCG
* * * * *
11816194 AAAGTTGTGGCAGCGGGACCGGTAACACGCAGAGGGGGACTGGGCCGATCCCCGACTTGTGCATT
387 AAAGTTGTGGCAGCAGGACCGGCAACACGCAGAGAGGGACCGGGCCGATCCCCGACTTATGCATT
* * ** * **
11816259 ATGCCTCTCCGGCCTG-CTCAGCGCCCGAACGCTCATTTCGTGGGTTGAGTTAGGCTTGA-GG
452 ATGCCACTACGGCC-GACTCAGCGCCCGAACGCTCATTTCGTGGGTTGACATAGGCAT-ACAA
* * * * * *
11816320 AGTTCATTCCTAGTCTAAGATTAGATC-GAACCGAGCATTGCGGTAGCAGGATTGACAGCACACA
1 AGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGCATTGCGGCAACAGGATCGACAGCACACA
* * *
11816384 -GGGGGACCGGGTTGGTCCCCGACTTACGCATTCTACCTCTTCGA-TCGGCTGAGCGCTCGTG-C
65 GGGGGGACCGGGTCGGTCCCCGACTTACGCATTCGACCTCTCCGACT-GGCTGAGCGC-C-TGAC
* *
11816446 GCTCATTTCGTGGGTTGGCTTCGGCATAC-GAAGTTCAT-TCCATGTCTAAGCATATGGAGTTCA
127 GCTCATTTCGTGGGTTGGCTTAGGCATACAG-AGTTCATCCCCA-GTCTAAGCATATGGAGTTCA
11816509 TTCCCAGTCTAAGATTGGATCGGACCGAAGGTTACGGCAGCAGGACTAGCAGCAAGATCGGCAGC
190 TTCCCAGTCTAAGATTGGATCGGACCGAAGGTTACGGCAGCAGGACTAGCAGCAAGATCGGCAGC
* * *
11816574 ACACAGGGGGGACCAAGCCGATCCCCGGCTTGCGTATTCTGCCTTTTCGGTCGGCTGAGCGCTCG
255 ACACAGGGGGGACCAAGCCGATCCCCGGCTTGCGTATTCTGCCTCTCCGGTCGGCTGAGCGCCCG
** * * *
11816639 CATGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGA
320 CACACCCGTTCCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATATCTAAGCCCCAGCT-GGA
* * *
11816703 CTGAAGGTTGTGGCAGCAGGACCGGCAACACGCAGAGAGGGACCGGGCCGATCCCCGGCTTATGC
384 CCGAAAGTTGTGGCAGCAGGACCGGCAACACGCAGAGAGGGACCGGGCCGATCCCCGACTTATGC
* * *
11816768 ATTATGCCACTACGGTCGACTCAGCGCCTGAACGCTCGTTTCGTGGGTTGACATAGGCATACAA
449 ATTATGCCACTACGGCCGACTCAGCGCCCGAACGCTCATTTCGTGGGTTGACATAGGCATACAA
* ** *
11816832 AGTTCATTCCCAGTCTATGATCAGACCAGACCGAGGGTTGCGGCAACAGGATCGACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGCATTGCGGCAACAGGATCGACAGCACACA-
* * ** *
11816897 GGGGGGATCGGGTCGGTCCCTGACTTGTGCATTCGGCCTCTCCGACTGGCTGAGCGCCTGCACGC
65 GGGGGGACCGGGTCGGTCCCCGACTTACGCATTCGACCTCTCCGACTGGCTGAGCGCCTG-ACGC
* * *
11816962 TCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTTATCCCCAGTCTAAGCATATGGAGTTCATTCC
129 TCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCC
*
11817027 TAGTCTAAGATTGGATC
194 CAGTCTAAGATTGGATC
11817044 AGATCGAGGG
Statistics
Matches: 588, Mismatches: 104, Indels: 51
0.79 0.14 0.07
Matches are distributed among these distances:
499 6 0.01
500 127 0.22
501 51 0.09
502 5 0.01
503 1 0.00
504 1 0.00
505 2 0.00
509 1 0.00
510 3 0.01
511 3 0.01
512 262 0.45
513 2 0.00
514 119 0.20
515 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (512 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGCATTGCGGCAACAGGATCGACAGCACACAG
GGGGGACCGGGTCGGTCCCCGACTTACGCATTCGACCTCTCCGACTGGCTGAGCGCCTGACGCTC
ATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCA
GTCTAAGATTGGATCGGACCGAAGGTTACGGCAGCAGGACTAGCAGCAAGATCGGCAGCACACAG
GGGGGACCAAGCCGATCCCCGGCTTGCGTATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACACC
CGTTCCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATATCTAAGCCCCAGCTGGACCGAAAG
TTGTGGCAGCAGGACCGGCAACACGCAGAGAGGGACCGGGCCGATCCCCGACTTATGCATTATGC
CACTACGGCCGACTCAGCGCCCGAACGCTCATTTCGTGGGTTGACATAGGCATACAA
Found at i:11816871 original size:159 final size:159
Alignment explanation
Indices: 11816708--11817007 Score: 341
Period size: 159 Copynumber: 1.9 Consensus size: 159
11816698 TCGGACTGAA
* * * * *
11816708 GGTTGTGGCAGCAGGACCGGCAACACGCAGAGAGGGACCGGGCCGATCCCCGGCTTATGCATTAT
1 GGTTGCGGCAACAGGACCGACAACACGCAGAGAGGGACCGGGCCGATCCCCGACTTATGCATTAG
* *
11816773 GCCACTACG-GTCGACTCAGCGCCTGAACGCTCGTTTCGTGGGTTGACATAGGCATACAAAGTTC
66 GCCACTCCGACT-GACTCAGCGCCTGAACGCTCGTTTCGTGGGTTGACATAGGCATACAAAGTTC
*
11816837 ATTCCCAGTCTATGATCAGACCAGACCGAG
130 ATCCCCAGTCTATGATCAGACCAGACCGAG
* * * * * * * * * *
11816867 GGTTGCGGCAACAGGATCGACAGCACGCAGGGGGGGATCGGGTCGGTCCCTGACTTGTGCATTCG
1 GGTTGCGGCAACAGGACCGACAACACGCAGAGAGGGACCGGGCCGATCCCCGACTTATGCATTAG
* * * * * * * * *
11816932 GCCTCTCCGACTGGCTGAGCGCCTGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTTA
66 GCCACTCCGACTGACTCAGCGCCTGAACGCTCGTTTCGTGGGTTGACATAGGCATACAAAGTTCA
11816997 TCCCCAGTCTA
131 TCCCCAGTCTA
11817008 AGCATATGGA
Statistics
Matches: 113, Mismatches: 27, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
159 112 0.99
160 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.22
Consensus pattern (159 bp):
GGTTGCGGCAACAGGACCGACAACACGCAGAGAGGGACCGGGCCGATCCCCGACTTATGCATTAG
GCCACTCCGACTGACTCAGCGCCTGAACGCTCGTTTCGTGGGTTGACATAGGCATACAAAGTTCA
TCCCCAGTCTATGATCAGACCAGACCGAG
Found at i:11818198 original size:26 final size:26
Alignment explanation
Indices: 11818162--11818214 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11818152 GTTGACTTAG
11818162 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
11818188 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11818214 G
1 G
11818215 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11818668 original size:158 final size:158
Alignment explanation
Indices: 11818188--11818689 Score: 474
Period size: 158 Copynumber: 3.2 Consensus size: 158
11818178 CCCAGTCTAA
* * * * * * *
11818188 GCATACGGAGTTCATTCCCA-GTGTAAGATCGGATCGGGCTGAGGGTTGCGACAGGAGGATCGGC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCGGATCGGACTAAGGGTTGTGGCAGCAGGATCGGC
* * * * * * *
11818252 AGCACGAAG-GGGCGACCGGGTTGATCCCCGACTTGCGCCTTCTGCCTCTCCGGTCGGCTGAGTG
65 AGCACGCAGAGGG-GACTGGGTCGATCTCTGACTTGCGCATTCTGCCTCTCCGGTAGGCTGAGTG
* *
11818316 CCCTCACGCCCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
** * ** * * *
11818346 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAACTGGACCAAGGGTTGTGGCAGCAGGACCGGC
1 GCATACAGAGTTCATTCCATGTCTAAGATCGGATC-GGACTAAGGGTTGTGGCAGCAGGATCGGC
** * * * * * * * *
11818410 AGCATACAGAGGGGGACTGAGCCGATCTCTGGCTTGTGCATTATGGCTCTCCGGCCA-GCTCAGT
65 AGCACGCAGA-GGGGACTGGGTCGATCTCTGACTTGCGCATTCTGCCTCTCCGG-TAGGCTGAGT
* * ** * *
11818474 GCCCGAATGCTTATTTCGTGGGTTGACTTAG
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* **
11818505 GCATACAGAGTTTATTCC-TAGTCTAAGATCGGATCGGACTAAGGGTTGTGGCAGCAGGATCGAT
1 GCATACAGAGTTCATTCCAT-GTCTAAGATCGGATCGGACTAAGGGTTGTGGCAGCAGGATCGGC
* * * ** *
11818569 AGCACGCAGAGGGGACTGGGTCGGTCTCTGACTTACGCATTCTACCTCTCTAGTAGGCTGAGCGC
65 AGCACGCAGAGGGGACTGGGTCGATCTCTGACTTGCGCATTCTGCCTCTCCGGTAGGCTGAGTGC
11818634 CCGCACGCTCGTTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
11818663 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
11818690 CATACGGAGT
Statistics
Matches: 263, Mismatches: 72, Indels: 18
0.75 0.20 0.05
Matches are distributed among these distances:
157 7 0.03
158 136 0.52
159 114 0.43
160 6 0.02
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCGGATCGGACTAAGGGTTGTGGCAGCAGGATCGGCA
GCACGCAGAGGGGACTGGGTCGATCTCTGACTTGCGCATTCTGCCTCTCCGGTAGGCTGAGTGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:11818693 original size:26 final size:26
Alignment explanation
Indices: 11818663--11818715 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11818653 GTTGGCTTAG
11818663 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
11818689 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11818715 G
1 G
11818716 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11819260 original size:159 final size:157
Alignment explanation
Indices: 11818898--11819405 Score: 468
Period size: 159 Copynumber: 3.2 Consensus size: 157
11818888 CCCAGTCTGA
* *
11818898 GCATATGGAGTTCATTCCCA-GTCTAAGATCACACCGAACCGAGGGTTGTGGCAGCAGGATAGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGAT-ACACCGAA-CGAGGGTTGTGGCAGCAGGATCGGC
* * * * * * * *
11818962 AGCACGTAGGGGGGGATCGAGCTGATCCCCGGCTTACGCATTCTGCCTCTCTAACTGGCTGAGCG
63 AGCACGCAGAGGGGGACCGAGCTGATCCCCGACTTACGCATTCTGCCTCTCCAGCTGACAGAGCG
* * * * *
11819027 CCTGCATGCCCGTTTCATGTTTTGGCTTAT
128 CCCGCACGCTCGTTTCATGTGTTGGCTTAG
* * ** * * * * *
11819057 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCAGATCGAGGGTTGTGGTAGCGGGACCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAG--ATACACCGAACGAGGGTTGTGGCAGCAGGATCGGCA
* * ** * * * * *
11819122 GCACACAGAGGGGGACCGGGCTGATCCCCGACTGGCGCATTATGCCTCTCCCGCCGACACAGTGC
64 GCACGCAGAGGGGGACCGAGCTGATCCCCGACTTACGCATTCTGCCTCTCCAGCTGACAGAGCGC
*
11819187 CCGTACGCTCGTTTCATGTGTTGGCTTAG
129 CCGCACGCTCGTTTCATGTGTTGGCTTAG
** * *
11819216 GCATACGGAGTTCATTCCCA-GTCTAAGATTGA-ACCGAACTGAGGGTTGCAGCAGCAAGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGA-T-ACACCGAAC-GAGGGTTGTGGCAGCAGGATCGG
* * * * * *
11819279 CAACATGCA-AGGGGGACCGAGCCGGTCCTCGACTTACGCATTCTGCCTCTCCGGCTGACAGAGC
62 CAGCACGCAGAGGGGGACCGAGCTGATCCCCGACTTACGCATTCTGCCTCTCCAGCTGACAGAGC
*
11819343 GCCCACACGCTCGTTTCAT-TGGTTGGCTTAG
127 GCCCGCACGCTCGTTTCATGT-GTTGGCTTAG
*
11819374 GCATACAGAGTTCATTCCATGTCTAAGCATAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATAC
11819406 GCAGTTCATT
Statistics
Matches: 276, Mismatches: 62, Indels: 23
0.76 0.17 0.06
Matches are distributed among these distances:
157 5 0.02
158 102 0.37
159 161 0.58
160 7 0.03
161 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATACACCGAACGAGGGTTGTGGCAGCAGGATCGGCAGC
ACGCAGAGGGGGACCGAGCTGATCCCCGACTTACGCATTCTGCCTCTCCAGCTGACAGAGCGCCC
GCACGCTCGTTTCATGTGTTGGCTTAG
Found at i:11819424 original size:26 final size:26
Alignment explanation
Indices: 11819374--11819426 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
11819364 GTTGGCTTAG
*
11819374 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
11819400 GCATAC-GCAGTTCATTCCCA-ATCTAA
1 GCATACAG-AGTTCATT-CCATATCTAA
11819426 G
1 G
11819427 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:11819775 original size:26 final size:26
Alignment explanation
Indices: 11819736--11819791 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
11819726 TGGGTTGATT
11819736 TAAGCATACAGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
* * *
11819762 TAAGCATACGGAGTTCATTCCCTGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
11819788 TAAG
1 TAAG
11819792 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:11820268 original size:26 final size:26
Alignment explanation
Indices: 11820219--11820269 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
11820209 TTGGCTTAGG
* *
11820219 CATACGGAGTTCATTCCATGTCTAAC
1 CATACAGAGTTCATTCCATATCTAAC
11820245 CATACAGAGTTCATTCC-TAATCTAA
1 CATACAGAGTTCATTCCAT-ATCTAA
11820270 GATCAAATCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATTCCATATCTAAC
Found at i:11820477 original size:25 final size:26
Alignment explanation
Indices: 11820427--11820478 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11820417 GTTGACTTAG
* *
11820427 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
11820453 GCATACGAAGTTCAT-CCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
11820478 G
1 G
11820479 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:11821292 original size:26 final size:26
Alignment explanation
Indices: 11821255--11821307 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
11821245 GTTGGCTTAG
11821255 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
11821281 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
11821307 G
1 G
11821308 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11821776 original size:26 final size:26
Alignment explanation
Indices: 11821724--11821781 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
11821714 ACTCTTTCTA
*
11821724 AAAAAGTTTAAAAAATCCCGAACAAT
1 AAAAAGTTTAAAAAATCCCGAAAAAT
* **
11821750 AAAAAGTTTCAAAAATCGTGAAAAAT
1 AAAAAGTTTAAAAAATCCCGAAAAAT
*
11821776 AGAAAG
1 AAAAAG
11821782 CGGGTCCTCT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.59, C:0.10, G:0.12, T:0.19
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCCCGAAAAAT
Found at i:11822300 original size:159 final size:157
Alignment explanation
Indices: 11822044--11822350 Score: 418
Period size: 159 Copynumber: 1.9 Consensus size: 157
11822034 ATCGGACCGG
* *
11822044 ACCGAGGGTTGCGGCAGCAAGATCGGCAACACGCAGGGGGACCGAGCCGATCCTCGGCTTACGCA
1 ACCGAGGGTTGCGGCAGCAAGATCGGCAACACGCAGGGGGACCGAGCCGATCCTCAGCTTACACA
* *
11822109 TTCTACCACTCCGACAGGCTGAGTGCCCGCACGCCCATTTTGTGGGTTGGCTTAGGCACAGGGAG
66 TTCTACCACTCCGACAGGCTGAGCGCCCGCACGCCCATTTTGTGGGTTGGCTTAGGCACACGGAG
11822174 TTCATTCCATGTCTAAGCCCAAGCCGA
131 TTCATTCCATGTCTAAGCCCAAGCCGA
* * * * * * *
11822201 ACCGAGGGTTGTGGTAGCAGGATCGGCATCACGTAGAGGGGGACCGGGCCGATCCTCAGCTTGCA
1 ACCGAGGGTTGCGGCAGCAAGATCGGCAACACG--CAGGGGGACCGAGCCGATCCTCAGCTTACA
* * * ** * *
11822266 CATTCTGCCTCTCCGATC-GGCTGAGCGCCTGCACGGTCGTTTTGTGGGTTGGCTTAGGCATACG
64 CATTCTACCACTCCGA-CAGGCTGAGCGCCCGCACGCCCATTTTGTGGGTTGGCTTAGGCACACG
11822330 GAGTTCATTCCATGTCTAAGC
128 GAGTTCATTCCATGTCTAAGC
11822351 ATATGGAGTT
Statistics
Matches: 129, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
157 29 0.22
159 99 0.77
160 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.21
Consensus pattern (157 bp):
ACCGAGGGTTGCGGCAGCAAGATCGGCAACACGCAGGGGGACCGAGCCGATCCTCAGCTTACACA
TTCTACCACTCCGACAGGCTGAGCGCCCGCACGCCCATTTTGTGGGTTGGCTTAGGCACACGGAG
TTCATTCCATGTCTAAGCCCAAGCCGA
Found at i:11822352 original size:26 final size:25
Alignment explanation
Indices: 11822323--11822374 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
11822313 GTTGGCTTAG
11822323 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
*
11822349 GCATATGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
11822374 G
1 G
11822375 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:11823074 original size:26 final size:26
Alignment explanation
Indices: 11823044--11823096 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11823034 GTTGACTTAG
*
11823044 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
11823070 GCATACGAAGTTCATTCCCTGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
11823096 G
1 G
11823097 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:11823594 original size:26 final size:26
Alignment explanation
Indices: 11823545--11823597 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11823535 GTTGGCGTAG
*
11823545 GCATACGGAGTTCATTCCGTGTCTAA
1 GCATACGGAGTTCATTCCGAGTCTAA
*
11823571 GCATATGGAGTTCATTCTC-AGTCTAA
1 GCATACGGAGTTCATTC-CGAGTCTAA
11823597 G
1 G
11823598 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCGAGTCTAA
Found at i:11823957 original size:26 final size:26
Alignment explanation
Indices: 11823923--11823975 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11823913 GTTGATTTAG
*
11823923 GCATGCAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
11823949 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
11823975 G
1 G
11823976 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:11828587 original size:159 final size:160
Alignment explanation
Indices: 11828411--11828775 Score: 445
Period size: 159 Copynumber: 2.3 Consensus size: 160
11828401 CGCACACCCA
* * *
11828411 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CT-GAACCGAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCACTAGACTAG-ACCGAGGG
* * * * *
11828474 TTGTGGCAAC-GAGACCGGTAGCACGTAGAGGGGG-ACCGGGTCGATCCCCGGCTTACGCATTAT
65 TTGCGACAACAG-GACCGATAGCACGCAG-GGGGGTACCAGGTCGATCCCCGGCTTACGCATTAT
* * *
11828537 GCCTCTTCGATCAACTTAGTGCCCGCATGCTCG
128 GCCTCTTCGATCAACTGAGTGCCCCCACGCTCG
* * * *
11828570 TTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATTGGACTAGACCGAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATT-CCATGTCTAAGCACTAGACTAGACCGAGGG
* * * *
11828633 TTGCGACAGCAGGATCGATAGCATGCAGGGGGGTACCAGGTCGATCCCCGGCTTACGCATTCTGC
65 TTGCGACAACAGGACCGATAGCACGCAGGGGGGTACCAGGTCGATCCCCGGCTTACGCATTATGC
* * *
11828698 CTCTTCGGTCGACTGAGTGCCCCCGCGCTCG
130 CTCTTCGATCAACTGAGTGCCCCCACGCTCG
*
11828729 TTTCGTGGGTTGGCTTAGCCATACGAAGTTCATTCCATGTCTAAGCA
1 TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
11828776 TACAGAGTTC
Statistics
Matches: 174, Mismatches: 25, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
158 10 0.06
159 158 0.91
160 6 0.03
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.25
Consensus pattern (160 bp):
TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCACTAGACTAGACCGAGGGT
TGCGACAACAGGACCGATAGCACGCAGGGGGGTACCAGGTCGATCCCCGGCTTACGCATTATGCC
TCTTCGATCAACTGAGTGCCCCCACGCTCG
Found at i:11828947 original size:195 final size:193
Alignment explanation
Indices: 11828642--11829350 Score: 771
Period size: 195 Copynumber: 3.7 Consensus size: 193
11828632 GTTGCGACAG
* * * * * * * * *
11828642 CAGGATCGATAGCATGCAGGGGGGTACCAGGTCGATCCCCGGCTTACGCATTCTGCCTCTTCGGT
1 CAGGATCGACAGCACGTAGGGGGG-ATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGT
** * * *
11828707 CGACTGAGTGCCCCCGCGCTCGTTTCGTGGGTTGGCTTAGCCATACGAAGTTCATTCCATGTCTA
65 CGACTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGCCATACGAAGTTCATTCCATGTCTA
11828772 AGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAACAGGACTAGC
130 AGCATAC-GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGC-ACAGGACTAGC
11828837 A
193 A
*
11828838 GCAGGATCGACAGCCCGTAAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTG-C-CTCCGG
1 -CAGGATCGACAGCACGT-AGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGG
* *
11828901 TCGACTAAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGCCATACAAAGTTCATTCCATGTCT
64 TCGACTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGCCATACGAAGTTCATTCCATGTCT
* * *
11828966 AAGTATACGAAGCTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGTAGGACTAG
129 AAGCATACG-AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCA-CAGGACTAG
11829031 CAA
192 C-A
** * * *
11829034 CAGGATCGGTAGCACGCAGGGAGGGATCGGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCAGT
1 CAGGATCGACAGCACGTAGGG-GGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGT
* * * * * * *
11829099 TGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCT
65 CGACTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGCCATACGAAGTTCAT-TCCATGTCT
* * * *
11829163 AAGCATACGGAGTGCATTCCCAGTCTAAGATCGGATCGAATCGAGGGTT---G--C--GA-TA--
129 AAGCATAC-GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCACAGGACTAGC
11829218 A
193 A
* * * * *
11829219 CAGGATCGACAGCACGTAGGTGGGACCAGGCCGATCCCTAGCTTGCGTATTCTGCCTCTCCGG-C
1 CAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTC
* * * * * ** *
11829283 CAGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATTGGGAGTTCATTCCATGTCTA
66 GA-CTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGCCATACGAAGTTCATTCCATGTCTA
11829348 AGC
130 AGC
11829351 CCCAGTCGGA
Statistics
Matches: 438, Mismatches: 63, Indels: 35
0.82 0.12 0.07
Matches are distributed among these distances:
183 3 0.01
184 89 0.20
185 18 0.04
188 2 0.00
189 2 0.00
194 7 0.02
195 167 0.38
196 3 0.01
197 136 0.31
198 11 0.03
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (193 bp):
CAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTC
GACTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGCCATACGAAGTTCATTCCATGTCTAA
GCATACGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCACAGGACTAGCA
Found at i:11828982 original size:26 final size:26
Alignment explanation
Indices: 11828944--11828994 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
11828934 TGGCTTAGCC
*
11828944 ATACAAAGTTCATT-CCATGTCTAAGT
1 ATACAAAGCTCATTCCCA-GTCTAAGT
*
11828970 ATACGAAGCTCATTCCCAGTCTAAG
1 ATACAAAGCTCATTCCCAGTCTAAG
11828995 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (26 bp):
ATACAAAGCTCATTCCCAGTCTAAGT
Found at i:11829175 original size:26 final size:26
Alignment explanation
Indices: 11829139--11829191 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11829129 GTTGACTTAG
*
11829139 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTGCATCCCCAGTCTAA
*
11829165 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACGGAGTGCATCCCCAGTCTAA
11829191 G
1 G
11829192 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTGCATCCCCAGTCTAA
Found at i:11830419 original size:159 final size:158
Alignment explanation
Indices: 11830010--11830421 Score: 460
Period size: 155 Copynumber: 2.6 Consensus size: 158
11830000 TCAAAGGCCA
* * * * * * *
11830010 ATCCCTAGCTTACGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCCCATTTCATGGTTTG
1 ATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGAACGCTCGTTTCATGGGTTG
* * ** * *
11830075 GCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGTAGCGAGA
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGAACCAGCCGGATCGAGGGTTGTAGCAGCGAGA
*
11830140 CCGACAGCACGCAGAGGGGGACCGATCG
131 CCGACAGCACGAAGAGGGGGACCGATCG
* * * * *** * *
11830168 ATCCCCGACTTGCGCATTATGCCTCTCC-G--GGCTCATTACCCGTACACTCGTTTCATGGGTTG
1 ATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGAACGCTCGTTTCATGGGTTG
* *
11830230 ACTTAGGCATACGGAGTTCATTCCCA-GTCTAA-AATCAGACCGGATCGAGGGTTGTAGCAGC-A
66 GCTTAGGCATACGGAGTTCATT-CCATGTCTAAGAACCAG-CCGGATCGAGGGTTGTAGCAGCGA
** *
11830292 GGATTGACAGCACGTAAG-GGGGGACCGGGTCG
129 -GACCGACAGCACG-AAGAGGGGGACC-GATCG
*
11830324 ATCCCTGGCTTGCACATTCTGCCTCTCCGGCTGGCTGAGCGCCCGAACGCTCGTTTCATGGGTTG
1 ATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGAACGCTCGTTTCATGGGTTG
*
11830389 GCTTAGGCATACGAAGTTCATTCCATGTCTAAG
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAG
11830422 CATACGGAGT
Statistics
Matches: 205, Mismatches: 39, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
154 4 0.02
155 88 0.43
156 33 0.16
157 1 0.00
158 26 0.13
159 53 0.26
ACGTcount: A:0.19, C:0.29, G:0.28, T:0.24
Consensus pattern (158 bp):
ATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGAACGCTCGTTTCATGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGAACCAGCCGGATCGAGGGTTGTAGCAGCGAGA
CCGACAGCACGAAGAGGGGGACCGATCG
Found at i:11830425 original size:26 final size:26
Alignment explanation
Indices: 11830395--11830447 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11830385 GTTGGCTTAG
11830395 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
*
11830421 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
11830447 G
1 G
11830448 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:11830914 original size:158 final size:158
Alignment explanation
Indices: 11830484--11830935 Score: 523
Period size: 159 Copynumber: 2.8 Consensus size: 158
11830474 GCAGGACCAG
* * *
11830484 TAGCAGGATCGGCAGCACGTAGGAGGGGACCGGGCCGATCCCCAACTTGCGCATTCTACCTC-TC
1 TAGCAGGATCGACAGCACGTAGG-GGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTC
* * *
11830548 TGGCCAGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATG
65 -GGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * *
11830613 TCTAAGCCCTAGCTAGACCGAGGGTTGTGA
129 TCTAAGACCTAGCCAGACCGAGGGTTGCGA
* * * * ** * * * *
11830643 CAGCGGGACCGATAGCACACAGAGGGGGACTGGGCCGATCCCCGACTTGTGCATTATGCCTCTCC
1 TAGCAGGATCGACAGCACGTAG-GGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTC
** * * *
11830708 GGTCGACTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-G
65 GGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATG
*
11830772 TCTAAGATC-AGACCAGACCGAGGGTTGCGA
129 TCTAAGACCTAG-CCAGACCGAGGGTTGCGA
* * *
11830802 TAGCAGGTTCGACAGCACGTAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCG
1 TAGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCG
* * * * ** *
11830867 GTCGGTTGAACGCCCGCACACTCGTTTCTTGGGTTGGCTTATCCATACGAAGTTCATTCCATGTC
66 GTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
11830932 TAAG
131 TAAG
11830936 CATACAAAGT
Statistics
Matches: 238, Mismatches: 50, Indels: 11
0.80 0.17 0.04
Matches are distributed among these distances:
157 3 0.01
158 92 0.39
159 138 0.58
160 5 0.02
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (158 bp):
TAGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCG
GTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGACCTAGCCAGACCGAGGGTTGCGA
Found at i:11831320 original size:397 final size:397
Alignment explanation
Indices: 11830577--11831360 Score: 1069
Period size: 397 Copynumber: 2.0 Consensus size: 397
11830567 ACGCTCGTTT
* * *
11830577 CGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCTAGCTAGACCGAGGGTTGTG
1 CGTGGGTTGGCTTAGGCAGACAGAGTTCATTACATGTCTAAGCCCCAGCTAGACCGAGGGTTGTG
* * * * *
11830642 ACAGCGGGACCGATAGCACACAGAGGGGGACTGGGCCGATCCCCGACTTGTGCATTATGCCTCTC
66 ACAGCAGGACAGACAGCACACAGAGGGGGACTGAGCCGATCCCCGACTTGCGCATTATGCCTCTC
*
11830707 CGGTCGACTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
131 CGGTCGACTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* *
11830772 TCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGTTCGACAGCACGTAGGGGGGACCAGGCC
196 TCTAAGATCAGACCAGACCGAGGGTTACGATAGCAGGATCGACAGCACGTAGGGGGGACCAGGCC
* * * *
11830837 GATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGTTGAACGCCCGCACACTCGTTTCTTGGGTT
261 GATCCCCGGCTTGCGCATTCTGCCTCTTCCGACCGTTGAACGCCCGCACACTCGTTTCCTGGGTT
*
11830902 GGCTTATCCATACGAAGTTCATTCCATGTCTAAGCATACAAAGTTCAATCCCAGTCGAAGATCAG
326 GGCTTAGCCATACGAAGTTCATTCCATGTCTAAGCATACAAAGTTCAATCCCAGTCGAAGATCAG
11830967 ACTGGAC
391 ACTGGAC
* * *
11830974 CGTGGGTTGGCTTAGGCAGAGAGAGTTCATTACATGTCTAAGCCCCAG-TCGGACTGAGGGTTGT
1 CGTGGGTTGGCTTAGGCAGACAGAGTTCATTACATGTCTAAGCCCCAGCT-AGACCGAGGGTTGT
* **
11831038 GACAGTAGGATCAG-CAGCACGTAGAGGGGGA-TCGAGCCGATCCCC-AGCTTGCGCATTATGCC
65 GACAGCAGGA-CAGACAGCACACAGAGGGGGACT-GAGCCGATCCCCGA-CTTGCGCATTATGCC
* ** * *
11831100 TCTTCGGTCGGTTCAGTACCCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTC
127 TCTCCGGTCGACTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
* * *
11831165 TCAGTCTAAGATCAGACCGGATCGAGGGTTAC-AGTAGCAGGATCGACAGCACGTAAGGGGGGAC
192 CCAGTCTAAGATCAGACCAGACCGAGGGTTACGA-TAGCAGGATCGACAGCACGT-AGGGGGGAC
* * * **
11831229 CGGGTCGATCCCCGGCTT-CTGCATTCTGCCTC-TCCGACCGTTGAGCGCCCGCAGGCTCGTTTC
255 CAGGCCGATCCCCGGCTTGC-GCATTCTGCCTCTTCCGACCGTTGAACGCCCGCACACTCGTTTC
** * *** * *
11831292 CTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTA
319 CTGGGTTGGCTTAGCCATACGAAGTTCATTCCATGTCTAAGCATACAAAGTTCAATCCCAGTCGA
11831357 AGAT
384 AGAT
11831361 TTTGAGCCAC
Statistics
Matches: 337, Mismatches: 43, Indels: 14
0.86 0.11 0.04
Matches are distributed among these distances:
396 4 0.01
397 294 0.87
398 39 0.12
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (397 bp):
CGTGGGTTGGCTTAGGCAGACAGAGTTCATTACATGTCTAAGCCCCAGCTAGACCGAGGGTTGTG
ACAGCAGGACAGACAGCACACAGAGGGGGACTGAGCCGATCCCCGACTTGCGCATTATGCCTCTC
CGGTCGACTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCAGACCAGACCGAGGGTTACGATAGCAGGATCGACAGCACGTAGGGGGGACCAGGCC
GATCCCCGGCTTGCGCATTCTGCCTCTTCCGACCGTTGAACGCCCGCACACTCGTTTCCTGGGTT
GGCTTAGCCATACGAAGTTCATTCCATGTCTAAGCATACAAAGTTCAATCCCAGTCGAAGATCAG
ACTGGAC
Found at i:11831693 original size:26 final size:26
Alignment explanation
Indices: 11831663--11831715 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11831653 GTTGGCTTAG
11831663 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
* *
11831689 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
11831715 G
1 G
11831716 ATTGGGTCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:11832060 original size:26 final size:26
Alignment explanation
Indices: 11832031--11832083 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11832021 GTTGACTTAG
*
11832031 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
11832057 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11832083 G
1 G
11832084 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11832365 original size:159 final size:159
Alignment explanation
Indices: 11832198--11832558 Score: 388
Period size: 159 Copynumber: 2.3 Consensus size: 159
11832188 CACATGCCTG
* * *
11832198 TTTCGTGGGTTGGCTTAGGCACATGGAGTTCATTCCATGTCTAAG-CCGCAGTCGGACCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCGCA-CCGGACCGAGGGT
*** ** * * * * *
11832262 TGTGGCAGCGGGA-CAGATAACACG-CAGAGGGGGACCGGGTCGATCCCCGGCTTACGTATTATG
65 TACAGCAGCAAGATC-GACAACACGAAAG-GGGGGACCGGGCCGATCCCCGACTTACGCATTATG
11832325 CCTCTCCGACCGACTCAACGCCCGAACACCCA
128 CCTCTCCGACCGACTCAACGCCCGAACACCCA
* * * * *
11832357 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAGGATCGGACCGGACTGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCGCACCGGACCGAGGGT
* *
11832421 TACAGCAGCAAGATCGACAACACGAAAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCC
65 TACAGCAGCAAGATCGACAACACGAAAGGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCC
* * * * * * * * *
11832486 TCTCTGGCCGACTGAGCGCCTGTACGCTCG
130 TCTCCGACCGACTCAACGCCCGAACACCCA
*
11832516 TTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
11832559 TGCATACGAA
Statistics
Matches: 166, Mismatches: 31, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
158 3 0.02
159 154 0.93
160 9 0.05
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCGCACCGGACCGAGGGTT
ACAGCAGCAAGATCGACAACACGAAAGGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCT
CTCCGACCGACTCAACGCCCGAACACCCA
Found at i:11832703 original size:176 final size:175
Alignment explanation
Indices: 11832423--11833105 Score: 564
Period size: 184 Copynumber: 3.8 Consensus size: 175
11832413 CTGAGGGTTA
* * * * *
11832423 CAGCAGCAAGATCGACAACACGAAAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTC
1 CAGCAGCAAGATCGACAGCACG-TAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTACCTC
* * * * * * *
11832488 TCTGGCCGACTGAGCGCCTGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCA
65 TCCGGCCGATTGAGCGCCTGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
* * *
11832553 TGTCTATGCATACGAAGTTCATTCCCATTCTAAGATCAGATAGGAC
130 TGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGATAGGAC
* * * *
11832599 CAGCAGCAGGATCGGCAGCACGTAGAGGGGATCGGGCCGATCCCTCGGCTTACGCATTCTACCTC
1 CAGCAGCAAGATCGACAGCACGTAGGGGGGACCGGGCCGATCCC-CGGCTTACGCATTCTACCTC
* * * * * * * *
11832664 TCCGGTCGATTGAGGGCCTGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATCCCC
65 TCCGGCCGATTGAGCGCCTGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCC
* * * *
11832729 A-GTCTAAGCATACGGAGTGCACTCCTAGTCTAAGATCGAACTGGATCGAGGGTTA-
129 ATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATC--A---GAT--A-GG--AC
* * * ** * * * * *
11832784 CGGCAGTAGGATCGGTAGCATGCACGGGGGACCGGGCTGATCCCCAGCTTACGCATTCTACCTCT
1 CAGCAGCAAGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTACCTCT
** *
11832849 CCGATCGATTGATCGCCTGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCA-TCC-T
66 CCGGCCGATTGAGCGCCTGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
* ** *
11832912 CGGTCTACGCATACGGAGTTCATTCCCAATCTAAGATTGGATCGGATC
131 --GTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGATAGGA-C
* ** * * * *
11832960 GAGGGTTTCGGTAGCAAGATCGACAGCACGTAGGGGGGATTGGGCCGATTCTCTGCTTGCGCATT
1 CA--G---C---AGCAAGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTACGCATT
* * * ** * *
11833025 CTACCTCTCCGGCCGGTTGATCGCCCGCACGCCCATTTTGTTGGTTGGCTTAGGCATAGGGAGTT
58 CTACCTCTCCGGCCGATTGAGCGCCTGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTT
11833090 CATTCCATGTCTAAGC
123 CATTCCATGTCTAAGC
11833106 CCAAGTCAGA
Statistics
Matches: 402, Mismatches: 78, Indels: 46
0.76 0.15 0.09
Matches are distributed among these distances:
174 1 0.00
175 19 0.05
176 119 0.30
177 3 0.01
178 2 0.00
179 3 0.01
181 4 0.01
182 2 0.00
183 1 0.00
184 208 0.52
185 38 0.09
186 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (175 bp):
CAGCAGCAAGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTACCTCT
CCGGCCGATTGAGCGCCTGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
GTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGATAGGAC
Found at i:11832944 original size:26 final size:26
Alignment explanation
Indices: 11832894--11832944 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
11832884 GTTGGCTTAG
**
11832894 GCATACGGAGTTCATCCTCGGTCTAC
1 GCATACGGAGTTCATCCTCAATCTAC
11832920 GCATACGGAGTTCATTCC-CAATCTA
1 GCATACGGAGTTCA-TCCTCAATCTA
11832945 AGATTGGATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCAATCTAC
Done.