Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 75 of 402
Found at i:11833210 original size:159 final size:158
Alignment explanation
Indices: 11833014--11833422 Score: 425
Period size: 159 Copynumber: 2.6 Consensus size: 158
11833004 CCGATTCTCT
* * * * *
11833014 GCTTGCGCATTCTACCTCTCCGGCCGGTTGA-TCGCCCGCACGCCCATTTTGTTGGTTGGCTTAG
1 GCTTGCGCATTCTACCTCTCCGACCGGTTAAGT-GCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
* * *
11833078 GCATAGGGAGTTCATTCCATGTCTAAGCCCA-AGTCAGATCAAGGGTTGTGGCAGC-GAAACTGG
65 GCATACGGAGTTCATTCCATGTCTAAGCCCAGA-TCAGACCAAGGGTTGTGGCAGCAG-AACTGA
11833141 CAGCACACAGAGGGGGACCAGGCTGATCC-CAA
128 CAGCACACAG-GGGGGACCAGGCTGATCCTC-A
* * * * * * *
11833173 GCTTGCGCATTATGCCTCTCCGACCGGTTCAGTGCCCGAACGCTTGTTTCGTGGGTTGACTTAGG
1 GCTTGCGCATTCTACCTCTCCGACCGGTTAAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGG
** * * * * * *
11833238 CATACGGAGTTCATTCC-TAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATTGATA
66 CATACGGAGTTCATTCCAT-GTCTAAGCCCAGATCAGACCAAGGGTTGTGGCAGCAGAACTGACA
* * * * *
11833302 GCACGCAGGGGGGATCGGGCTGGTCCTCG
130 GCACACAGGGGGGACCAGGCTGATCCTCA
* * * *
11833331 GCTTGTGCATTCTACCTCTCCAACCGGCTGAAG-GCCCGCACGCTCGTTTTGTGGGTTGGCCTAG
1 GCTTGCGCATTCTACCTCTCCGACCGG-TTAAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
11833395 GCATACGGAGTTCATTCCATGTCTAAGC
65 GCATACGGAGTTCATTCCATGTCTAAGC
11833423 ATACGGAGTT
Statistics
Matches: 204, Mismatches: 39, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
158 90 0.44
159 111 0.54
160 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (158 bp):
GCTTGCGCATTCTACCTCTCCGACCGGTTAAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTAAGCCCAGATCAGACCAAGGGTTGTGGCAGCAGAACTGACAG
CACACAGGGGGGACCAGGCTGATCCTCA
Found at i:11833396 original size:158 final size:157
Alignment explanation
Indices: 11832920--11833421 Score: 485
Period size: 158 Copynumber: 3.2 Consensus size: 157
11832910 CTCGGTCTAC
* * * * *
11832920 GCATACGGAGTTCATTCCCA-ATCTAAGATTGGATCGGATCGAGGGTT-TCGGTAGCAAGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATCGGATCGAGGGTTGT-GGCAGCAGGATTGA
* * * * * * **
11832983 CAGCACGTAGGGGGGATTGGGCCGATTCTCTGCTTGCGCATTCTACCTCTCCGGCCGGTTGATCG
64 CAGCACGCAGGGGGGATCGGGCTGATCCTCAGCTTGCGCATTCTACCTCTCCGACCGG-TGAAGG
* * *
11833048 CCCGCACGCCCATTTTGTTGGTTGGCTTAG
128 CCCGCACGCTCGTTTTGTGGGTTGGCTTAG
* * ** * * * * *
11833078 GCATAGGGAGTTCATTCCATGTCTAAG-CCCAAGTCAGATCAAGGGTTGTGGCAGC-GAAACTGG
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-TCGGATCGAGGGTTGTGGCAGCAG-GATTGA
* * * * * **
11833141 CAGCACACAGAGGGGGACCAGGCTGATCC-CAAGCTTGCGCATTATGCCTCTCCGACCGGTTCAG
64 CAGCACGCAG-GGGGGATCGGGCTGATCCTC-AGCTTGCGCATTCTACCTCTCCGACCGGTGAAG
* * * *
11833205 TGCCCGAACGCTTGTTTCGTGGGTTGACTTAG
127 -GCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
* *
11833237 GCATACGGAGTTCATTCC-TAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATTGAT
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAGGATTGAC
* * * *
11833301 AGCACGCAGGGGGGATCGGGCTGGTCCTCGGCTTGTGCATTCTACCTCTCCAACCGGCTGAAGGC
65 AGCACGCAGGGGGGATCGGGCTGATCCTCAGCTTGCGCATTCTACCTCTCCGACCGG-TGAAGGC
*
11833366 CCGCACGCTCGTTTTGTGGGTTGGCCTAG
129 CCGCACGCTCGTTTTGTGGGTTGGCTTAG
11833395 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
11833422 CATACGGAGT
Statistics
Matches: 268, Mismatches: 63, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
157 4 0.01
158 140 0.52
159 121 0.45
160 3 0.01
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAGGATTGACA
GCACGCAGGGGGGATCGGGCTGATCCTCAGCTTGCGCATTCTACCTCTCCGACCGGTGAAGGCCC
GCACGCTCGTTTTGTGGGTTGGCTTAG
Found at i:11833431 original size:26 final size:26
Alignment explanation
Indices: 11833395--11833447 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11833385 GTTGGCCTAG
11833395 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11833421 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11833447 G
1 G
11833448 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11833987 original size:26 final size:26
Alignment explanation
Indices: 11833948--11834000 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11833938 GTTGGCTTAG
* *
11833948 GCATACGGATTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
11833974 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11834000 G
1 G
11834001 AGTTTGAGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11835248 original size:170 final size:170
Alignment explanation
Indices: 11834941--11835444 Score: 561
Period size: 171 Copynumber: 3.0 Consensus size: 170
11834931 ACGTAGAAAC
* * * * * * * *
11834941 GGATCGAGCTGATCCCCAGTTTGGGCATTATGCCTCTCCGATCGGCTCAGTACCCACACACTCAT
1 GGATCGAGCTGATCCCCAGCTTGCGCATTCTGCCTCTTCGGTCGGTTGAGTACCCACACGCTCAT
* * *** ** *
11835006 TTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCCATCTAAGATCAGATCAGA-CTGAGGGTG
66 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAG-TCAGATC-GAGGGTT
* *
11835070 GCGGCAGCAGGACCAGCAGC-AGGATCGACAGCACACAG-GGG
129 GTGGCAGCAGGACCGGCAGCGA-GATCGACAGCACACAGAGGG
* * * ** *
11835111 GGATCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGGCCGGTTGAGCACCCGTACGCTCGT
1 GGATCGAGCTGATCCCCAGCTTGCGCATTCTGCCTCTTCGGTCGGTTGAGTACCCACACGCTCAT
* *
11835176 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCTAGTCAAATCGAGGGTTG
66 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGTCAGATCGAGGGTTG
* * * * *
11835241 TGGCAGCAAGACCGGAAGCGAGATTGGCAGCACGCAGAGGG
130 TGGCAGCAGGACCGGCAGCGAGATCGACAGCACACAGAGGG
** * *
11835282 GGATC-AGGCTGATCCCTGGCTTGCGCATTCTGCCTCTTTGGTCGGTTGAGTGCCCACACGCTCA
1 GGATCGA-GCTGATCCCCAGCTTGCGCATTCTGCCTCTTCGGTCGGTTGAGTACCCACACGCTCA
*
11835346 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG-CCGATCCGAGGGT
65 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCAGTCAGAT-CGAGGGT
*
11835410 TGTGGCAGCAGGACCGGCAGTGAGATC-AGCAGCAC
128 TGTGGCAGCAGGACCGGCAGCGAGATCGA-CAGCAC
11835445 GTAGAGGAGG
Statistics
Matches: 277, Mismatches: 49, Indels: 15
0.81 0.14 0.04
Matches are distributed among these distances:
170 133 0.48
171 141 0.51
172 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (170 bp):
GGATCGAGCTGATCCCCAGCTTGCGCATTCTGCCTCTTCGGTCGGTTGAGTACCCACACGCTCAT
TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGTCAGATCGAGGGTTGT
GGCAGCAGGACCGGCAGCGAGATCGACAGCACACAGAGGG
Found at i:11835419 original size:341 final size:328
Alignment explanation
Indices: 11834791--11835429 Score: 699
Period size: 341 Copynumber: 1.9 Consensus size: 328
11834781 GGGATTGGGT
* *
11834791 CGATCCCCGGCTTACGCATTTTACCTCTCCGACCGTCTGAGCACCCGCACGCCCGTTTCATGGGT
1 CGATCCCCAGCTTACGCATTCTACCTCTCCGACCGTCTGAGCACCCGCACGCCCGTTTCATGGGT
* ** *
11834856 TGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGTGG
66 TGGCTTAGCCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAAATCGAGGGTTGTGGCAGAGG
* * * *
11834921 GACCGACAGCACGTAGAAACGGATCGAGCTGATCCCCAGTTTGGGCATTATGCCTCTCCGATCGG
131 GACAGACAGCACGCAGAAACGGATCGAGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGG
* *
11834986 CTCAGTACCCACACACTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCCATCTAAGA
196 CTCAGTACCCACACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCACATCTAAGA
* *
11835051 TCAGATCAGACTGAGGGTGGCGGCAGCAGGACCAGCAGCAGGATCGACAGCACACAGGGGGGATC
261 CCAGA-CAGACCGAGGGTGGCGGCAGCAGGACCAGCAGCAGGATCGACAGCACACAGGGGGGATC
11835116 GAGC
325 GAGC
* * * * * * *
11835120 CGATCCCCAGCTTGCGCATTCTGCCTCTTCGGCCGGT-TGAGCACCCGTACGCTCGTTTCGTGGG
1 CGATCCCCAGCTTACGCATTCTACCTCTCCGACC-GTCTGAGCACCCGCACGCCCGTTTCATGGG
* * *
11835184 TTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCCCTAGTCAAATCGAGGGTTGTGGCAGCA
65 TTGGCTTAGCCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAAATCGAGGGTTGTGGCAG--
*** ** *
11835249 AGACCGGAAGCGAGATTGGCAGCACGCAGAGGGGGATC-AGGCTGATCCCTGGCTTGCGCATTCT
128 AG---GG-A-C-AGA----CAGCACGCAGAAACGGATCGA-GCTGATCCCCAGCTTGCGCATTAT
** * * * * * *
11835313 GCCTCTTTGGTCGGTTGAGTGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
182 GCCTCTCCGATCGGCTCAGTACCCACACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
** * * * * *
11835378 TTCCATGTCTAAGCCCCAG-CCGATCCGAGGGTTGTGGCAGCAGGACCGGCAG
247 TTCCACATCTAAG-ACCAGACAGA-CCGAGGGTGGCGGCAGCAGGACCAGCAG
11835430 TGAGATCAGC
Statistics
Matches: 249, Mismatches: 45, Indels: 20
0.79 0.14 0.06
Matches are distributed among these distances:
329 109 0.44
330 2 0.01
331 1 0.00
334 2 0.01
335 1 0.00
336 1 0.00
337 2 0.01
340 4 0.02
341 124 0.50
342 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (328 bp):
CGATCCCCAGCTTACGCATTCTACCTCTCCGACCGTCTGAGCACCCGCACGCCCGTTTCATGGGT
TGGCTTAGCCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAAATCGAGGGTTGTGGCAGAGG
GACAGACAGCACGCAGAAACGGATCGAGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGG
CTCAGTACCCACACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCACATCTAAGA
CCAGACAGACCGAGGGTGGCGGCAGCAGGACCAGCAGCAGGATCGACAGCACACAGGGGGGATCG
AGC
Found at i:11835586 original size:26 final size:26
Alignment explanation
Indices: 11835547--11835599 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11835537 GTTGACTTAG
*
11835547 GCATACGGATTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
11835573 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11835599 G
1 G
11835600 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11836293 original size:26 final size:26
Alignment explanation
Indices: 11836257--11836335 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
11836247 GTTGACTTAG
11836257 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11836283 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
11836309 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11836335 G
1 G
11836336 ATCGAACCGA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11836796 original size:158 final size:157
Alignment explanation
Indices: 11836391--11836798 Score: 426
Period size: 158 Copynumber: 2.6 Consensus size: 157
11836381 TCGATACCTT
* * *
11836391 GCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCTGCACGCCCGTTTAGTGGGTTGGCTTAGG
1 GCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
* * * * * *
11836456 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGACAGCGGGACCGGTAG
66 CATA-GGAGTTCATTCCATGTCTAAGCCACAGCCGGACCGAAGGTTGAGACAGCAGGACCGATAG
* *
11836521 CACGCAGAGGGGTACCGACCGATCCTCA
130 CACGCAGAGGGGGACCGACCGATCCCCA
* * * * * * * * * *
11836549 GCTTGAGCATTATGCCTCTTCGATCGGCTCAGCGCCCGGACGCTCGTTTCATGGGTTGACTTATG
1 GCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
* * * * * *
11836614 CATAGAGAGTTCATTCCCA-ATCTAAGATCACA-CCGGATCGAAGGTTGAGGCAGCATGATCGAT
66 CATAG-GAGTTCATT-CCATGTCTAAG-CCACAGCCGGACCGAAGGTTGAGACAGCAGGACCGAT
* * * * *
11836677 CGCATGCAG-GGGGGACCGGGCTGATCCCCG
128 AGCACGCAGAGGGGGACC-GACCGATCCCCA
* * *
11836707 GCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCACACTCGTTTCGTCGGTTGGCTTAGG
1 GCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
11836772 CATACGGAGTTCATTCCATGTCTAAGC
66 CATA-GGAGTTCATTCCATGTCTAAGC
11836799 ATACGGAGTT
Statistics
Matches: 197, Mismatches: 47, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
157 11 0.06
158 179 0.91
159 7 0.04
ACGTcount: A:0.17, C:0.28, G:0.30, T:0.24
Consensus pattern (157 bp):
GCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
CATAGGAGTTCATTCCATGTCTAAGCCACAGCCGGACCGAAGGTTGAGACAGCAGGACCGATAGC
ACGCAGAGGGGGACCGACCGATCCCCA
Found at i:11837579 original size:26 final size:26
Alignment explanation
Indices: 11837505--11837583 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
11837495 GTTGACTTAG
*
11837505 GCATACGGAGTTCATCCCTAATCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
11837531 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
11837557 GCATACGAAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCA-TCCCTAGTCTAA
11837583 G
1 G
11837584 ATTGGACCAG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 46 0.92
27 4 0.08
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:11837887 original size:160 final size:159
Alignment explanation
Indices: 11837704--11838061 Score: 372
Period size: 158 Copynumber: 2.3 Consensus size: 159
11837694 CCGTTTTGTT
* * * * *
11837704 GGTTGGCTTAGGCATAGGGAGTTCGTTCCATGTCTAAGCCCCAGTCC-GACCGAGGGTTGTG-GG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACC-AAGGTT-TGCGG
* ** * *
11837767 CAGC-GGGACCGACAGCACGTAGAGGTGGATCGGGTCGAA-CCCCGGCTTGCGCATTATGCCTAT
64 CAGCAAGG-CCGACAGCACACAG-GGGGGATCGGG-CCAATCCCCGGCTTGCGCATTATGCCT-T
11837830 CT-GGCCGGCTT-AGCGCCCGCACGCTCATTTCGTG
125 CTCGGCCGG-TTAAGCGCCCGCACGCTCATTTCGTG
* * * *
11837864 GGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGACCGGACCAAGGTTTGCGGT
1 GGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCAAGGTTTGCGGC
** * * * * *
11837927 AGCAAGGTTGATAGCACACAGGGGGGATCGGGCCAATCTCTGGCTTGCGCATTCTGCCTTTTCGG
65 AGCAAGGCCGACAGCACACAGGGGGGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTTCTCGG
*
11837992 CCGGTTAAGCGCCCGCACGCTCGTTTCGTG
130 CCGGTTAAGCGCCCGCACGCTCATTTCGTG
* *
11838022 GGTTGGCTTAGGCATACGAAGTTCATTCCATGTCCAAGCA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
11838062 TATGGAGTTC
Statistics
Matches: 164, Mismatches: 25, Indels: 19
0.79 0.12 0.09
Matches are distributed among these distances:
157 10 0.06
158 90 0.55
159 24 0.15
160 37 0.23
161 3 0.02
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.24
Consensus pattern (159 bp):
GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCAAGGTTTGCGGCA
GCAAGGCCGACAGCACACAGGGGGGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTTCTCGGC
CGGTTAAGCGCCCGCACGCTCATTTCGTG
Found at i:11838203 original size:185 final size:184
Alignment explanation
Indices: 11837875--11838245 Score: 503
Period size: 185 Copynumber: 2.0 Consensus size: 184
11837865 GTTGACTTAG
* * ** * *
11837875 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGTTTGCGGTAGCAAGGTTGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGACAGCAAGGTCGACA
* * * ** *
11837940 GCACACAGGGGGGATCGGGCCAATCTCTGGCTTGCGCATTCTGCCTTTTCGGCCGGTTAAGCGCC
66 GCACACAGGGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTTTCCGGCCGACTAAGCACC
*
11838005 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCCAA
131 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCCAA
* *
11838059 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGACAG-TAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGACAGCAAGG-TCGAC
* * * * *
11838123 AGCACGTA-AGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTTTCCGGCTGACTGAGC
65 AGCAC--ACAGGGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTTTCCGGCCGACTAAGC
* *
11838187 ACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
128 ACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCCAA
11838244 GC
1 GC
11838246 CCGAGCCGGA
Statistics
Matches: 162, Mismatches: 22, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
183 3 0.02
184 57 0.35
185 101 0.62
186 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGACAGCAAGGTCGACA
GCACACAGGGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTTTCCGGCCGACTAAGCACC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCCAA
Found at i:11838419 original size:26 final size:26
Alignment explanation
Indices: 11838390--11838442 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11838380 GTTAACTTAG
*
11838390 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
11838416 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
11838442 G
1 G
11838443 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:11838884 original size:158 final size:158
Alignment explanation
Indices: 11838416--11839065 Score: 547
Period size: 158 Copynumber: 4.0 Consensus size: 158
11838406 CCCAGTCTAA
* * * * * *
11838416 GCATACGGAGTTCATTCCCAATCTAAGATCGGACTGAACCAAGGATTGCGGTAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTGCGATAACAGGATCGACA
* * * * * * *
11838481 GCACGGAGGGGGGATC-GAGCCGATCCCCGGGTTACACATTCTACCTCTCC-GATCGACTAAGCA
66 GCACGCAGAGGGGATCAG-GCCGATCCCCGGCTTACGCATTCTACCTCTCCAG-TCGGCTGAGCG
*
11838544 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * ** * * * * *
11838574 GCATACGAAATTTAATT--CATGTCTAAG-CCCCAGCCGAACCGAGGGTTGTGGTAGC-GAGACC
1 GCATACG-AAGTTCATTCCCA-GTCTAAGATCGGA-CCGAACCAAGGGTTGCGATAACAG-GATC
* * * * ** * * * * *
11838635 GACAGCACGCAGAAGGTGATTAGGCTGATCCCCAGCTTGTGCATTATGCCTCTCCGGTTGGCTTA
62 GACAGCACGCAG-AGGGGATCAGGCCGATCCCCGGCTTACGCATTCTACCTCTCCAGTCGGCTGA
* *
11838700 GTGCCCGCACGCTCGTTTCATGGGTTGACTTAG
126 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
11838733 GCATACGAAGTTCATTTCTAGTCTAAGATCGGACCGGATCAAGGGTTGCGATAACAGGATTGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTGCGATAACAGGATCGACA
* * * * *
11838798 GCACGCAGAGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCC
66 GCACGCAGAGGGGATCAGGCCGATCCCCGGCTTACGCATTCTACCTCTCCAGTCGGCTGAGCGCC
*
11838863 CGCACACTCGTTTCATGGGTTGGCTTAG
131 CGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** *
11838891 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCAGGACCAGCA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGG-T-T-GC-G-A-TA--A-C-
* * * * *
11838956 GTAGGATCGACAGCACGCAGGGGGGATCAGGCCGATTCTCGGTTTATGCATTCTACCTCTCCAGT
56 --AGGATCGACAGCACGCAGAGGGGATCAGGCCGATCCCCGGCTTACGCATTCTACCTCTCCAGT
* *
11839021 CAGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAG
119 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
11839061 GCATA
1 GCATA
11839066 TGGAGTTAAT
Statistics
Matches: 390, Mismatches: 79, Indels: 34
0.78 0.16 0.07
Matches are distributed among these distances:
157 5 0.01
158 161 0.41
159 114 0.29
160 7 0.02
161 2 0.01
162 1 0.00
163 1 0.00
164 1 0.00
166 1 0.00
167 1 0.00
170 96 0.25
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTGCGATAACAGGATCGACA
GCACGCAGAGGGGATCAGGCCGATCCCCGGCTTACGCATTCTACCTCTCCAGTCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:11839100 original size:170 final size:170
Alignment explanation
Indices: 11838785--11839258 Score: 551
Period size: 170 Copynumber: 2.8 Consensus size: 170
11838775 GGGTTGCGAT
* * * *
11838785 AACAGGATTGACAGCACGCAGAGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCAG
1 AACAGGATCGACAGCACGCAGGGGGGATCAGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCAG
** *
11838850 CCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
66 CCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCT
**
11838915 AAGATCGGACCGGACTGAGGGTTGTGGCAGCAGGACCAGC
131 AAGATCCCACCGGACTGAGGGTTGTGGCAGCAGGACCAGC
** * * * *
11838955 AGTAGGATCGACAGCACGCAGGGGGGATCAGGCCGATTCTCGGTTTATGCATTCTACCTCTCCAG
1 AACAGGATCGACAGCACGCAGGGGGGATCAGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCAG
* * *
11839020 TCAGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTAATT-CCATGTC
66 CCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTAATTCCCA-GTC
* *
11839084 T-A-ATCCCCACCCGGACTGAGGGTTGTGGTAGCAGGACCGGC
130 TAAGAT-CCCA-CCGGACTGAGGGTTGTGGCAGCAGGACCAGC
* * * * ** * * *
11839125 AACGGGATCGACAGCATGGAGAGGGGGACCTTGCTGATCCCCGGCTTGTGCATTATGCCTCTCC-
1 AACAGGATCGACAGCACGCAG-GGGGGATCAGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCA
* * * * * * *
11839189 GACCGGTTAAGCGGCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
65 G-CCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTAATTCCCAGT
11839254 CTAAG
129 CTAAG
11839259 CATACGGAGT
Statistics
Matches: 251, Mismatches: 45, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
168 2 0.01
169 6 0.02
170 156 0.62
171 83 0.33
172 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (170 bp):
AACAGGATCGACAGCACGCAGGGGGGATCAGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCAG
CCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCT
AAGATCCCACCGGACTGAGGGTTGTGGCAGCAGGACCAGC
Found at i:11839261 original size:26 final size:26
Alignment explanation
Indices: 11839232--11839284 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11839222 GTTGACTTAG
11839232 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
11839258 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11839284 G
1 G
11839285 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11839565 original size:158 final size:158
Alignment explanation
Indices: 11839398--11839795 Score: 424
Period size: 159 Copynumber: 2.5 Consensus size: 158
11839388 CGTATGCCCT
* * *
11839398 TTTCATGGGTTGGCTTAGGCATAAGGAGTGCATTCCATGTCTAAGCCCCAACCGGATCAAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCGGA-CGAGGGTT
** *
11839463 GTGGCAGCAGGACCGGCAG-ACAC-AGAGGGGGACCGGGCCGATCCTTGGCTTGCACATTATGCC
65 GTGGCAGCAGGACCGGCAGCACACAAG-GGGGGACCGGGCCGATCCCCGACTTGCACATTATGCC
*
11839526 TCTTCGGCTGGCTCAGCACCCGCACGCTCA
129 TCTTCGGCTGGCTCAGCACCCACACGCTCA
* * * * ** *
11839556 TTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCGGACTGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATT-CCATGTCTAAGCCCCAACCGGAC-GAGGGT
* * * * * * * * *
11839620 TGCGGGAGCAGGATCGACAGCACACAAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGTC
64 TGTGGCAGCAGGACCGGCAGCACACAAGGGGGGACCGGGCCGATCCCCGACTTGCACATTATGCC
* * * * **
11839685 TCTTTGGCTGGCTGAGCGCCCACATGCTTG
129 TCTTCGGCTGGCTCAGCACCCACACGCTCA
* ** *
11839715 TTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAGCGAGGTTT
1 TTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCGGA-CGAGGGTT
*
11839780 GTGGCAGTAGGACCGG
65 GTGGCAGCAGGACCGG
11839796 TAGTGGGATC
Statistics
Matches: 190, Mismatches: 44, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
157 1 0.01
158 67 0.35
159 119 0.63
160 3 0.02
ACGTcount: A:0.19, C:0.25, G:0.32, T:0.24
Consensus pattern (158 bp):
TTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCGGACGAGGGTTG
TGGCAGCAGGACCGGCAGCACACAAGGGGGGACCGGGCCGATCCCCGACTTGCACATTATGCCTC
TTCGGCTGGCTCAGCACCCACACGCTCA
Found at i:11839655 original size:842 final size:844
Alignment explanation
Indices: 11838110--11839759 Score: 1958
Period size: 842 Copynumber: 2.0 Consensus size: 844
11838100 AGGGTTGCGA
* * * * *
11838110 CAGTAGGATCGACAGCACGTAAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTTTCC
1 CAGTAGGATCGACAGCACGTAAGGGGGGATCAGGCCGATCCCCGGCTTATGCATTCTACCTCTCC
* * *
11838175 GGCTGACTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGT
66 GGCAGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTAATTCCATGT
* * * * * * *
11838240 CTAAGCCCGAGCCGGATTGAAGGTTGTGGCAGCAGGATCAGGGAGCGGGATCGACGGCACATAAA
131 CTAAGCCCCACCCGGACTGAAGGTTGTGGCAGCAGGATCAGGCAACGGGATCGACAGCACAGAAA
* * * * *
11838305 GGGGGACTAGGTTGATCCTCGGCTTACGTATTATGCCACTTCGACCGACTGAGCGCCAGCATGCT
196 GGGGGACTAGGCTGATCCCCGGCTTACGCATTATGCCACTCCGACCGACTAAGCGCCAGCATGCT
11838370 CGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
261 CGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
* * ** * *
11838435 AATCTAAGATCGGACTGAACCAAGGATTGCGGTAGCAGGATCGACAGCACGGAGGGGGGATCGAG
326 AATCTAAGATCGAACGGAACCAAGGATTGCGACAGCAAGATCGACAGCACGCAGGGGGGATCGAG
* * * * *
11838500 CCGATCCCCGGGTTACACATTCTACCTCTCCGATCGACTAAGCACCCGCACGCTCGTTTCGTGGG
391 CCGATCCCCGGCTTACACATTCTACCTCTCCGAGCCACTAAGCACCCGCACGCCCGTTTCATGGG
* * * * * *
11838565 TTGGCTTAGGCATACGAAATTTAATTCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGTAGCG
456 TTGGCTTAGGCATAAGAAAGTGAATTCATGTCTAAGCCCCAACCGAACCAAGGGTTGTGGCAGCG
* * ** * ** *
11838630 AGACCGACAGCACGCAGAAGGTGATTAGGCTGATCCCCAGCTTGTGCATTATGCCTCTCCGGTTG
521 AGACCGACAGCACACAGAAGGGGACCAGGCCGATCCCCAGCTTGCACATTATGCCTCTCCGGCTG
* ** * * *
11838695 GCTTAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTTCTAGTCTAAG
586 GCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
* * * * *
11838760 ATCGGACCGGATCAAGGGTTGCGATAACAGGATTGACAGCACGCAGAGGGGATCGGGCCGATCCT
651 ATCGAACCGGATCAAGGGTTGCGAGAACAGGATCGACAGCACACAGAGGGGATCGGGCCGATCCC
* *
11838825 CGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTA
716 CGACTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCACACACTCGTTTCATGGGTTGGCTTA
11838890 GGCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCAGGACCAG
781 GGCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCAGGACCAG
* * * *
11838954 CAGTAGGATCGACAGCACG-CAGGGGGGATCAGGCCGATTCTCGGTTTATGCATTCTACCTCTCC
1 CAGTAGGATCGACAGCACGTAAGGGGGGATCAGGCCGATCCCCGGCTTATGCATTCTACCTCTCC
* * * * *
11839018 AGTCAG-CTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTAATTCCATG
66 -GGCAGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTAATTCCATG
* * * * ** *
11839082 TCTAATCCCCACCCGGACTGAGGGTTGTGGTAGCAGGA-CCGGCAACGGGATCGACAGCATGGAG
130 TCTAAGCCCCACCCGGACTGAAGGTTGTGGCAGCAGGATCAGGCAACGGGATCGACAGCACAGAA
* ** * **
11839146 AGGGGGACCT-TGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGGTTAAGCGGCC-GCAT
195 AGGGGGA-CTAGGCTGATCCCCGGCTTACGCATTATGCCACTCCGACCGACTAAGC-GCCAGCAT
*
11839209 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
258 GCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
* * * **
11839274 CCCAGTCTAAGATCGAACCGGATCGAAGG-TTGCGACAGCAAGATCGGTAGCACGCAGGGGGGA-
323 CCCAATCTAAGATCGAA-CGGAACCAAGGATTGCGACAGCAAGATCGACAGCACGCAGGGGGGAT
* * * * * * * * * * * *
11839337 CTGGGTCGATCCCTGGCTTGCGCATTCTGCCTCT-CTAGCCAGCTGAGCGCCCGTATGCCCTTTT
387 C-GAGCCGATCCCCGGCTTACACATTCTACCTCTCCGAGCCA-CTAAGCACCCGCACGCCCGTTT
* * * *
11839401 CATGGGTTGGCTTAGGCATAAG-GAGTGCATTCCATGTCTAAGCCCCAACCGGATCAAGGGTTGT
450 CATGGGTTGGCTTAGGCATAAGAAAGTGAATT-CATGTCTAAGCCCCAACCGAACCAAGGGTTGT
* * * ***
11839465 GGCAGC-AGGACCGGCAG-ACACAGAGGGGGACCGGGCCGATCCTTGGCTTGCACATTATGCCTC
514 GGCAGCGA-GACCGACAGCACACAGAAGGGGACCAGGCCGATCCCCAGCTTGCACATTATGCCTC
* ** * *
11839528 TTCGGCTGGCTCAGCACCCGCACGCTCATTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCC
578 TCCGGCTGGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCC
* * * *
11839593 AGTCTAAGATCGAACCGGA-CTGAGGGTTGCGGGAGCAGGATCGACAGCACACAAGGGGGGATCG
643 AGTCTAAGATCGAACCGGATC-AAGGGTTGCGAGAACAGGATCGACAGCACAC-AGAGGGGATCG
* * *** * ** * *
11839657 GGTCGATCCCCGACTTGCGCATTCTGTCTCTTTGGCTGGCTGAGCGCCCACATGCTTGTTTCGTG
706 GGCCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCACACACTCGTTTCATG
*
11839722 GGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
771 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
11839760 CCCCAGTCGG
Statistics
Matches: 667, Mismatches: 128, Indels: 24
0.81 0.16 0.03
Matches are distributed among these distances:
840 1 0.00
841 144 0.22
842 367 0.55
843 133 0.20
844 22 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (844 bp):
CAGTAGGATCGACAGCACGTAAGGGGGGATCAGGCCGATCCCCGGCTTATGCATTCTACCTCTCC
GGCAGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTAATTCCATGT
CTAAGCCCCACCCGGACTGAAGGTTGTGGCAGCAGGATCAGGCAACGGGATCGACAGCACAGAAA
GGGGGACTAGGCTGATCCCCGGCTTACGCATTATGCCACTCCGACCGACTAAGCGCCAGCATGCT
CGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
AATCTAAGATCGAACGGAACCAAGGATTGCGACAGCAAGATCGACAGCACGCAGGGGGGATCGAG
CCGATCCCCGGCTTACACATTCTACCTCTCCGAGCCACTAAGCACCCGCACGCCCGTTTCATGGG
TTGGCTTAGGCATAAGAAAGTGAATTCATGTCTAAGCCCCAACCGAACCAAGGGTTGTGGCAGCG
AGACCGACAGCACACAGAAGGGGACCAGGCCGATCCCCAGCTTGCACATTATGCCTCTCCGGCTG
GCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
ATCGAACCGGATCAAGGGTTGCGAGAACAGGATCGACAGCACACAGAGGGGATCGGGCCGATCCC
CGACTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCACACACTCGTTTCATGGGTTGGCTTA
GGCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCAGGACCAG
Found at i:11839737 original size:159 final size:156
Alignment explanation
Indices: 11839258--11839759 Score: 528
Period size: 158 Copynumber: 3.2 Consensus size: 156
11839248 CCCAGTCTAA
* * * *
11839258 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCGGATCGAAGGTTGCGACAGCAAGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCGGATCGAGGGTTGCGGCAGCAGGATCGGC
* * * **
11839322 AGCACGCAGGGGGGACTGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTAGCCAGCTGAGCGC
65 AGCACACAGGGGGGAC-GGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTTGGCTGGCTGAGCGC
* * *
11839387 CCGTATGCCCTTTTCATGGGTTGGCTTAG
129 CCGCATG-CTTTTTCGTGGGTTGGCTTAG
* * ** * * * *
11839416 GCATAAGGAGTGCATTCCATGTCTAAGCCCCAACCGGATCAAGGGTTGTGGCAGCAGGACCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGAACCGGATCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * * *
11839481 G-ACACAGAGGGGGACCGGGCCGATCCTTGGCTTGCACATTATGCCTCTTCGGCTGGCTCAGCAC
66 GCACACAG-GGGGGA-CGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTTGGCTGGCTGAGCGC
* * *
11839545 CCGCACGCTCATTTT-GTGGGTTGACTTAT
129 CCGCATGCT--TTTTCGTGGGTTGGCTTAG
* *
11839574 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCGGA-CTGAGGGTTGCGGGAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCGGATC-GAGGGTTGCGGCAGCAGGATCGG
* * *
11839637 CAGCACACAAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGTCTCTTTGGCTGGCTGAGC
64 CAGCACAC-AGGGGGGA-CGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTTGGCTGGCTGAGC
*
11839702 GCCCACATGCTTGTTTCGTGGGTTGGCTTAG
127 GCCCGCATGCTT-TTTCGTGGGTTGGCTTAG
*
11839733 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
11839760 CCCCAGTCGG
Statistics
Matches: 276, Mismatches: 56, Indels: 23
0.78 0.16 0.06
Matches are distributed among these distances:
157 11 0.04
158 165 0.60
159 98 0.36
160 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGAACCGGATCGAGGGTTGCGGCAGCAGGATCGGCA
GCACACAGGGGGGACGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTTGGCTGGCTGAGCGCCC
GCATGCTTTTTCGTGGGTTGGCTTAG
Found at i:11839946 original size:26 final size:26
Alignment explanation
Indices: 11839917--11839969 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11839907 GTTGACTTCG
11839917 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* * *
11839943 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
11839969 G
1 G
11839970 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:11840253 original size:159 final size:159
Alignment explanation
Indices: 11839943--11840445 Score: 513
Period size: 159 Copynumber: 3.2 Consensus size: 159
11839933 CCCAATCTAA
* * * * * *
11839943 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGCAGCAGTAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCGGACCAAAGGTTACGGCAGCAGGATCGG
* * *
11840006 CAACACGTA-AGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTC-GATCGACTGAG
65 CAACACGTAGAGGGGGATCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCAG-TCG-CTGAG
* *
11840069 CGCCCGCACGCCCGTTTCATTGGTTGGCTTAG
128 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
11840101 GCGTAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCAAAGGTTGA-GGCAGCGGGATCGG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGGACCAAAGGTT-ACGGCAGCAGGATCGG
* * * * * *
11840164 CAACATGTAGAGGGGGATCGGGCTAATCCCCAGCTTGCGCATTATGCCTCTCCAGCTAGCTCAGT
65 CAACACGTAGAGGGGGATCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCAG-TCGCTGAGC
* * ** *
11840229 GCCCACACGCTCATTTTGTGGGTTGACTTAG
129 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
11840260 GCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGATCGGACCGAGGGTTACGGTAGCAGGATCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGATCGGACCAAAGGTTACGGCAGCAGGATCGG
* * * * * * *
11840323 TAGCACGCAG-GGGGGATCAGG-TCGATCCTCGGCTTGCGCATTCTGCCTCTCCAGTCGTTGAGC
65 CAACACGTAGAGGGGGATCGGGCT-GATCCCCAGCTTGCGCATTCTGCCTCTCCAGTCGCTGAGC
11840386 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
129 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
11840417 GCATACAGAGTTAATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
11840446 TACGAAGTTC
Statistics
Matches: 278, Mismatches: 56, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
157 58 0.21
158 96 0.35
159 121 0.44
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGGACCAAAGGTTACGGCAGCAGGATCGGC
AACACGTAGAGGGGGATCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCAGTCGCTGAGCGC
CCGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:11840454 original size:26 final size:26
Alignment explanation
Indices: 11840417--11840469 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
11840407 GTTGGCTTAG
11840417 GCATACAGAGTTAATT-CCATGTCTAA
1 GCATACAGAGTTAATTCCCA-GTCTAA
*
11840443 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTAATTCCCAGTCTAA
11840469 G
1 G
11840470 ATTGAACTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:11840644 original size:26 final size:26
Alignment explanation
Indices: 11840614--11840664 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11840604 GTTAACTTAG
*
11840614 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
11840640 GCATACGAAGTTCATTCCCAATCTA
1 GCATACGAAGTTCATCCCCAATCTA
11840665 TGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:11840686 original size:197 final size:195
Alignment explanation
Indices: 11840312--11840698 Score: 474
Period size: 197 Copynumber: 2.0 Consensus size: 195
11840302 GGGTTACGGT
* * *
11840312 AGCAGGATCGATAGCACGCAGGGGGGATCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCAG
1 AGCAGGATCGACAGCACGCAGGGGGGACCAGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCAG
* * * * ** * *
11840377 TCGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTAATTCCATGTCTA
66 TCGCTGAGCACCCGCACACTCATTTCATGGGTTAACTTAGGCATACAGAGTTAATCCCATATCTA
* * * * **
11840442 AGCATACGAAGTTCATTCCCAGTCTAAGATTGAACTAGACTGAGGGTTGCGGTAGCAGGACCAGC
131 AGCATACGAAGTTCATTCCCAATCTAAGATGGAACGAGACCGAGGGTTGCGACAGCAGGACCAGC
* * *
11840507 AGCAGGATCGACAGCACGTAGGGGGTGACC-GGGCTGATCCTCGGCTTGCGCATTATGCCTCTTC
1 AGCAGGATCGACAGCACGCAGGGGG-GACCAGGTC-GATCCTCGGCTTGCGCATTATGCCTCTCC
* * * *
11840571 GGCTGGCTGAGCACCCGCACACTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCA-A
64 AG-TCGCTGAGCACCCGCACACTCATTTCATGGGTTAACTTAGGCATACAGAGTTAAT-CCCATA
* *
11840635 TCTAAGCATACGAAGTTCATTCCCAATCTATGATCGGACCGA-ACCGAGGGTTGCGACAGCAGGA
127 TCTAAGCATACGAAGTTCATTCCCAATCTAAGAT-GGAACGAGACCGAGGGTTGCGACAGCAGGA
11840699 TCAGTTGACT
Statistics
Matches: 161, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
195 26 0.16
196 31 0.19
197 97 0.60
198 7 0.04
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (195 bp):
AGCAGGATCGACAGCACGCAGGGGGGACCAGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCAG
TCGCTGAGCACCCGCACACTCATTTCATGGGTTAACTTAGGCATACAGAGTTAATCCCATATCTA
AGCATACGAAGTTCATTCCCAATCTAAGATGGAACGAGACCGAGGGTTGCGACAGCAGGACCAGC
Found at i:11840745 original size:697 final size:699
Alignment explanation
Indices: 11839895--11841171 Score: 1785
Period size: 697 Copynumber: 1.8 Consensus size: 699
11839885 CGCCTGCATG
* * * *
11839895 CTCATTTCGTGGGTTGACTTCGGCATACAGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTC
1 CTCATTTCATGGGTTAACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACGAAGTTCATTC
* * * * *
11839960 CCAGTCTAAGATCAGATCGGACCGAGGGTTGCAGCAGTAGGATCGGCAACACGTAAGGGGGACCG
66 CCAATCTAAGATCAGACCGAACCGAGGGTTGCAGCAGCAGGATCGGCAACACGCAAGGGGGACCG
* * * *
11840025 GGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGATCGACTGAGCGCCCGCACGCCCGTTTCATT
131 GGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCATTTCATG
* *
11840090 GGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAAGGTTGAGGCAG
196 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAAGGTTGAGGCAG
* * * *
11840155 CGGGA-TCGGCAACATGTAGAGGGGGATCGGGCTAATCCCCAGCTTGCGCATTATGCCTCTCC-A
261 CGGGACT-GGCAACACGTAGAGGGGGACCGAGCCAATCCCCAGCTTGCGCATTATGCCTCTCCGA
* * ** * *
11840218 GCTAGCTCAGTGCCCACACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTC
325 TC-AGCTCAGTGCCCACACACTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTC
* * * * * * * *
11840283 TAAGATCAGATCGGACCGAGGGTTACGGTAGCAGGATCGATAGCACG-CAGGGGGGATCAGGTCG
389 TAAGATCAGACCGGACCGAGGGTTACAGCAGCAGGATCGACACCACGTAAGGGGGCATCAGGCCG
* * * *
11840347 ATCCTCGGCTTGCGCATTCTGCCTCTCCAGTC-GTTGAGCGCCCGCACGCTCGTTTCATGGGTTG
454 ATCCCCGGCTTGCGCATTCTACCTCTCCAGTCGGCTGAGCGCCCGCAAGCTCGTTTCATGGGTTG
*
11840411 GCTTAGGCATACAGAGTTAATTCCATGTCTAAGCATAC-GAAGTTCATTCCCAGTCTAAGATTGA
519 GCTTAGGCATACAGAGTTAATTCCATGTCTAAGCATACAG-AGTTCATTCCCAATCTAAGATTGA
11840475 ACTAGACTGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCGACAGCACGTAGGGGGTGACCGGG
583 ACTAGACTGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCGACAGCACGTAGGGGGTGACCGGG
11840540 CTGATCCTCGGCTTGCGCATTATGCCTCTTCGGCTGGCTGAGCACCCGCACA
648 CTGATCCTCGGCTTGCGCATTATGCCTCTTCGGCTGGCTGAGCACCCGCACA
*
11840592 CTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGAAGTTCATTC
1 CTCATTTCATGGGTTAACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACGAAGTTCATTC
* * *** * *
11840657 CCAATCTATGATCGGACCGAACCGAGGGTTGC-GACAGCAGGATCAGTTGAC-TGCAGGGGGGAC
66 CCAATCTAAGATCAGACCGAACCGAGGGTTGCAG-CAGCAGGATC-GGCAACACGCAAGGGGGAC
* * * * *
11840720 CTGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCATTTCG
129 CGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCATTTCA
* * * *
11840785 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGC
194 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAAGGTTGAGGC
* * ** *
11840850 AGCGGGACTGGCAGCACGTAGAGGGGGACCGAGCCATTCCCTGGCTTGCGCATTATGCCTCTTCG
259 AGCGGGACTGGCAACACGTAGAGGGGGACCGAGCCAATCCCCAGCTTGCGCATTATGCCTCTCCG
* * ** ** *
11840915 ATCGGGTCAGTGCCCGTACACTTGTTTCATGGGTTGACTTATGCATACGAAGTTCATTCCCAGTC
324 ATCAGCTCAGTGCCCACACACTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTC
* * * *
11840980 TAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATTGACACCACGTAAGGGGGCATCGGGCCG
389 TAAGATCAGACCGGACCGAGGGTTACAGCAGCAGGATCGACACCACGTAAGGGGGCATCAGGCCG
* * *
11841045 ATCCCCGGCTTGCTCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGTTG
454 ATCCCCGGCTTGCGCATTCTACCTCTCCAGTCGGCTGAGCGCCCGCAAGCTCGTTTCATGGGTTG
*
11841110 GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATT
519 GCTTAGGCATACAGAGTTAATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATT
11841172 TTGAGCCACG
Statistics
Matches: 498, Mismatches: 75, Indels: 12
0.85 0.13 0.02
Matches are distributed among these distances:
696 1 0.00
697 362 0.73
698 47 0.09
699 87 0.17
700 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (699 bp):
CTCATTTCATGGGTTAACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACGAAGTTCATTC
CCAATCTAAGATCAGACCGAACCGAGGGTTGCAGCAGCAGGATCGGCAACACGCAAGGGGGACCG
GGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCATTTCATG
GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAAGGTTGAGGCAG
CGGGACTGGCAACACGTAGAGGGGGACCGAGCCAATCCCCAGCTTGCGCATTATGCCTCTCCGAT
CAGCTCAGTGCCCACACACTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTA
AGATCAGACCGGACCGAGGGTTACAGCAGCAGGATCGACACCACGTAAGGGGGCATCAGGCCGAT
CCCCGGCTTGCGCATTCTACCTCTCCAGTCGGCTGAGCGCCCGCAAGCTCGTTTCATGGGTTGGC
TTAGGCATACAGAGTTAATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATTGAACT
AGACTGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCGACAGCACGTAGGGGGTGACCGGGCTG
ATCCTCGGCTTGCGCATTATGCCTCTTCGGCTGGCTGAGCACCCGCACA
Found at i:11840969 original size:159 final size:160
Alignment explanation
Indices: 11840725--11841144 Score: 431
Period size: 159 Copynumber: 2.6 Consensus size: 160
11840715 GGGACCTGGT
* * ** * * * * *
11840725 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCATTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTATACCTCTCCGATCGGCTCAGCGCCCGCAAGCTCGTTTCGTGGGT
* * * ** *
11840790 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGATCGAGGGTTGTGGCAGCG
66 TGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCACCAGACCGGATCGAGGGTTGCAGCAGCA
* *
11840854 GGACTGGCAGCACGTAGAGGGGG-ACCGAGC
131 GGACTGACACCACGTA-AGGGGGCACCGAGC
* * * * * * * *
11840884 C-ATTCCCTGGCTTGCGCATTATGCCTCTTCGATCGGGTCAGTGCCCGTACA-CTTGTTTCATGG
1 CGA-TCCCCGGCTTGCGCATTATACCTCTCCGATCGGCTCAGCGCCCGCA-AGCTCGTTTCGTGG
* * *
11840947 GTTGACTTATGCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGCAGCA
64 GTTGGCTTAGGCATACGAAGTTCATT-CCATGTCTAAGCACCAGACCGGATCGAGGGTTGCAGCA
* * *
11841010 GCAGGATTGACACCACGTAAGGGGGCATCGGGC
128 GCAGGACTGACACCACGTAAGGGGGCACCGAGC
* * * *
11841043 CGATCCCCGGCTTGCTCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTATACCTCTCCGATCGGCTCAGCGCCCGCAAGCTCGTTTCGTGGGT
11841108 TGGCTTAGGCATAC-AGAGTTCATTCCATGTCTAAGCA
66 TGGCTTAGGCATACGA-AGTTCATTCCATGTCTAAGCA
11841145 TACAGAGTTC
Statistics
Matches: 208, Mismatches: 43, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
158 15 0.07
159 188 0.90
160 5 0.02
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.24
Consensus pattern (160 bp):
CGATCCCCGGCTTGCGCATTATACCTCTCCGATCGGCTCAGCGCCCGCAAGCTCGTTTCGTGGGT
TGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCACCAGACCGGATCGAGGGTTGCAGCAGCA
GGACTGACACCACGTAAGGGGGCACCGAGC
Found at i:11841166 original size:26 final size:26
Alignment explanation
Indices: 11841116--11841168 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11841106 GTTGGCTTAG
*
11841116 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
11841142 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
11841168 G
1 G
11841169 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:11841885 original size:26 final size:26
Alignment explanation
Indices: 11841848--11841900 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11841838 GTTGACTTAG
11841848 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
11841874 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11841900 G
1 G
11841901 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11842341 original size:158 final size:157
Alignment explanation
Indices: 11841882--11842375 Score: 489
Period size: 158 Copynumber: 3.1 Consensus size: 157
11841872 AAGCATACGT
* * * * ** *
11841882 AGTTCATTCCCA-GTCTAAGATCGGACCGGACTGAGGGTTGTGACAGTAGGATCGGCAGCACACA
1 AGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATCAACAGCACGCA
* * * * * * *
11841946 CGGGGGATCGGGCCGATCCCTGGCTTGCACTTTCTGCCTTTCTG-GCTGACTGAGCGCCCGCACG
65 -GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAG-CTGAGCGCCCGCACG
* *
11842010 CCCGTTTCGGGGGTTGGCTTAGGCATAG-GG
128 CTCGTTTCGTGGGTTGGCTTAGGCAT-GCGG
** * * * *
11842040 AGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGATGGTTGTGGCAGCGGGACTGGAACCA-CAA
1 AGTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGTGACAGCAGGA-T-CAA-CAGC-A
* * * * * * *
11842103 AG-AGGGGGATCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTCAGCACCCGCA
61 CGCAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCCCGCA
* * * *
11842167 CACTTGTTTTGTGGGTTGACTTAGGCATGCGG
126 CGCTCGTTTCGTGGGTTGGCTTAGGCATGCGG
* *
11842199 AGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGATCAACAGCACGCA
1 AGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATCAACAGCACGCA
* * *
11842263 GGGGGTATCGGCCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGTGCCCGCACGC
65 GGGGG-ATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCCCGCACGC
*
11842328 TCGTTTCGTGGGTTGGCTTAGGCATACGG
129 TCGTTTCGTGGGTTGGCTTAGGCATGCGG
11842357 AGTTCATTCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
11842376 CATACAGAGT
Statistics
Matches: 267, Mismatches: 55, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
156 4 0.01
157 15 0.06
158 129 0.48
159 109 0.41
160 7 0.03
161 3 0.01
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (157 bp):
AGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATCAACAGCACGCAG
GGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGGCTTAGGCATGCGG
Found at i:11842385 original size:26 final size:26
Alignment explanation
Indices: 11842349--11842401 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11842339 GTTGGCTTAG
*
11842349 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
11842375 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11842401 G
1 G
11842402 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11843009 original size:159 final size:158
Alignment explanation
Indices: 11842597--11843034 Score: 524
Period size: 158 Copynumber: 2.8 Consensus size: 158
11842587 CAGGATCGGT
* * ** *
11842597 AGCACGTAGCGGGGGACCAGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGTTGCCTGAGCG
1 AGCACGCAG-GGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
* *
11842662 CCCGCACGCTCATTTAATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAGCC
65 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAGCC
* * **
11842727 GGATCGAGGGTTGTGGCAGCGGGACCGAC
130 GGACCGAGGGTTGCGGCAGCAAGACCGAC
* ** * * * **
11842756 AGCACGCAGAGGGGACCGGGCTGATCCTTGACTTGTGCATTATGCCTCTCCGGCCGGCTCAATGC
1 AGCACGCAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
* *
11842821 CCGCACGCTCGTTTTC-TGGGTTGAG-TTAGGCTTACGGAGTTCATTCCCA-GTCTAAGA-TCAG
66 CCGCACGCTCG-TTTCATGGGTTG-GCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCCAG
*
11842882 ACCGGACCGAGGGTTGCGGCAGCAAGATCGAC
128 -CCGGACCGAGGGTTGCGGCAGCAAGACCGAC
* * * * *
11842914 AGTACGCAGGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGTTGAGCG
1 AGCACGCA-GGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
* * *
11842979 CCCACATGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
65 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
11843035 ACATCCGGAG
Statistics
Matches: 232, Mismatches: 39, Indels: 16
0.81 0.14 0.06
Matches are distributed among these distances:
157 3 0.01
158 129 0.56
159 100 0.43
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (158 bp):
AGCACGCAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAGCCG
GACCGAGGGTTGCGGCAGCAAGACCGAC
Found at i:11843913 original size:26 final size:26
Alignment explanation
Indices: 11843877--11843929 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11843867 GTTGGCTTAG
*
11843877 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
11843903 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11843929 G
1 G
11843930 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11846814 original size:26 final size:26
Alignment explanation
Indices: 11846778--11846829 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11846768 GTTGGCTTAG
*
11846778 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
11846804 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11846830 AGATTTTGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11849265 original size:17 final size:17
Alignment explanation
Indices: 11849243--11849283 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
11849233 GAGAGGAGTT
11849243 CATGACTTGGCTAAAGC
1 CATGACTTGGCTAAAGC
11849260 CATGACTTGGCTAAAGC
1 CATGACTTGGCTAAAGC
11849277 CATGACT
1 CATGACT
11849284 ACTGCTGAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (17 bp):
CATGACTTGGCTAAAGC
Found at i:11854758 original size:26 final size:26
Alignment explanation
Indices: 11854721--11854773 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11854711 GTTGACTTAG
11854721 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
11854747 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
11854773 G
1 G
11854774 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11855224 original size:159 final size:157
Alignment explanation
Indices: 11854747--11855240 Score: 510
Period size: 159 Copynumber: 3.1 Consensus size: 157
11854737 CCCAGTCTAA
* * * * *
11854747 GCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGACCAAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATCGACA
* *
11854812 GCACGTA-GGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGACTGAGCGC
66 GCACGCAGGGGGGGA-CGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGC
* *
11854876 CCGCATGCCCGTTTCATGGGTTGGCTTAG
130 CCGCATGCTCGTTTCGT-GGTTGGCTTAG
* * ** * * *
11854905 GCATAGGGAGTTCATT-CCATCTCTAAGCCCCA-ACCGGACCGAGGGTTGTGCCAGCGGGATCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGTGACAGCAGGATCGA
* ** * * * *
11854968 CAGCACGCAGAGGGGGACTGGATCGATCCCTGACTTGCGCATTATGCCTCTCCGATCGGCTCAGC
64 CAGCACGCAGGGGGGGAC-GGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGC
* * * *
11855033 ACCCGAATGCTCGTTTCGTGGTTGAACGTAG
128 GCCCGCATGCTCGTTTCGTGGTTG-GCTTAG
* * * * *
11855064 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGATTGTGATAGTC-GAATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAG-CAGGATCGAC
* * * *
11855128 AGCACGCAGGGGGGGATCGGGCCGGTCCCCGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGCG
65 AGCACGCAGGGGGGGA-CGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCG
* ** * *
11855193 CCTGCCCGCTCATTTTGTAGGTTGGCTTAG
129 CCCGCATGCTCGTTTCGT-GGTTGGCTTAG
11855223 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
11855241 ATGTTTAAGC
Statistics
Matches: 269, Mismatches: 57, Indels: 19
0.78 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 61 0.23
159 195 0.72
160 10 0.04
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATCGACA
GCACGCAGGGGGGGACGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCC
CGCATGCTCGTTTCGTGGTTGGCTTAG
Found at i:11855275 original size:26 final size:26
Alignment explanation
Indices: 11855223--11855275 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11855213 GTTGGCTTAG
* *
11855223 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCAAGTGTAA
11855249 GCATACGGAGTTCATTCCAAGTGTAA
1 GCATACGGAGTTCATTCCAAGTGTAA
11855275 G
1 G
11855276 TCGGACTAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTGTAA
Found at i:11855454 original size:26 final size:26
Alignment explanation
Indices: 11855418--11855470 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11855408 GTTGACTTAG
11855418 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
11855444 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11855470 G
1 G
11855471 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11855630 original size:183 final size:184
Alignment explanation
Indices: 11855311--11855643 Score: 447
Period size: 183 Copynumber: 1.8 Consensus size: 184
11855301 GTAAGACTAG
* * * **
11855311 TAGCAGGATCGACAGCACGCAGAGGGGATCGGGATGATCCTCGGCTTGTTCATTCTGCCTCTCCA
1 TAGCAGGATCGACAGCACGCAGAGGGGACCAGGATGATCCTCAGCTTGCGCATTCTGCCTCTCCA
* ** *
11855376 GCCTACTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
66 GCCGACTGAGCACCCACACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
11855441 TAAGCATACGGAGTTCATTCCCAGTTTAAGATCGAACCAGACTGAGGGTTGCGA
131 TAAGCATACGGAGTTCATTCCCAGTTTAAGATCGAACCAGACTGAGGGTTGCGA
* * *
11855495 TAGCAGGATCGACAGCACGTAGGGGGGACCAGG-TCGATCC-CAGTTTGCGCATTCTGCCTCTCC
1 TAGCAGGATCGACAGCACGCAGAGGGGACCAGGAT-GATCCTCAGCTTGCGCATTCTGCCTCTCC
* * * * **
11855558 GGCCGACTGAGCACCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC-TTTCCATG
65 AGCCGACTGAGCACCCACACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-G
* *
11855622 TTTAAGCATATGGAGTTCATTC
129 TCTAAGCATACGGAGTTCATTC
11855644 ATAGTCTAAG
Statistics
Matches: 127, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
182 4 0.03
183 89 0.70
184 34 0.27
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (184 bp):
TAGCAGGATCGACAGCACGCAGAGGGGACCAGGATGATCCTCAGCTTGCGCATTCTGCCTCTCCA
GCCGACTGAGCACCCACACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
TAAGCATACGGAGTTCATTCCCAGTTTAAGATCGAACCAGACTGAGGGTTGCGA
Found at i:11855653 original size:26 final size:26
Alignment explanation
Indices: 11855601--11855653 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
11855591 GTTGGCTTAG
* *
11855601 GCATACGGAGTTCTTTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
11855627 GCATATGGAGTTCATT-CATAGTCTAA
1 GCATACGGAGTTCATTCCAT-GTCTAA
11855653 G
1 G
11855654 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 3 0.13
26 20 0.87
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:11857401 original size:26 final size:26
Alignment explanation
Indices: 11857372--11857427 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
11857362 TAGGTTGACT
11857372 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* *
11857398 TAAGTATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
11857424 TAAG
1 TAAG
11857428 ATCGGACTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:11857704 original size:159 final size:159
Alignment explanation
Indices: 11857440--11858222 Score: 744
Period size: 159 Copynumber: 4.9 Consensus size: 159
11857430 CGGACTGGAT
* * * * * * * * *
11857440 CGAGGGTTGCGGCAGCAGGATCGATAGAATGCAG-GGGGGATCAGGTCGATCCCCGACTTGCGCA
1 CGAGGGTTTCGACAGCAGGATCGACAGCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCA
* * ** * *
11857504 TTCTGCCTCTCCGGTCGGCTGAGTGCCCGCATGC-CCTTTTCGTGGGTTGGCTTAGGCATAGGGA
66 TTCTGCCTCTTCGATCGGCTGAGCACCCGCACGCTCC-TTTCGTGGGTTGGCTTAGGCATACGGA
* *
11857568 GTTTATTCCATGTCTAAGCCCCAGTCGGAC
130 GTTCATTCCATGTCTAAGCCCCAGCCGGAC
* * *
11857598 CGAGGGTTTTGGCAGC-GAGATCGGCAGCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTGCGC
1 CGAGGGTTTCGACAGCAG-GATCGACAGCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTGCGC
* * ** **
11857662 ATTATGCCTCTTCGA-CTGGCTCAGCACCCGCACGCTCCTTTCGTGGGTTGAATTAGGCATACAA
65 ATTCTGCCTCTTCGATC-GGCTGAGCACCCGCACGCTCCTTTCGTGGGTTGGCTTAGGCATACGG
* * **
11857726 AGTTTATTCCCA-GTCCAAG-ATCAGACCGGAC
129 AGTTCATT-CCATGTCTAAGCCCCAG-CCGGAC
* * * * * * * *
11857757 CAAGGGTTTCGACAGCAGGATTGACAGCACATAGGGGGGGATCAGGTCGATCCCCGGCTTGCTCG
1 CGAGGGTTTCGACAGCAGGATCGACAGCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCA
* * * * *
11857822 TTCTACCTC-TCCAGCCGGCTGAGCACCCGCACGC-CCATTTCATGGGTTGGCTTAGGCATAGGG
66 TTCTGCCTCTTCGA-TCGGCTGAGCACCCGCACGCTCC-TTTCGTGGGTTGGCTTAGGCATACGG
11857885 AGTTCATTCCATGTCTAAGCCCCAGCCGGAC
129 AGTTCATTCCATGTCTAAGCCCCAGCCGGAC
* * * * * *
11857916 CGAGGGTTGT-GGCAGCGGGATCGATAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGC
1 CGAGGGTT-TCGACAGCAGGATCGACAGCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTGCGC
*** * * * * * * **
11857980 ACGATGCCTCTTTGATCGGCTTAGCGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACAAA
65 ATTCTGCCTCTTCGATCGGCTGAGCACCCGCACGCTCCTTTCGTGGGTTGGCTTAGGCATACGGA
** * *
11858045 GTTCATTCCCA-GTCTAAGATCGAACCGGAC
130 GTTCATT-CCATGTCTAAGCCCCAGCCGGAC
* * * *
11858075 TC-AGGGTTACGACAGCAGGATCAACAGCACGTA-ATGGGGGACCGGGTCGATCCCCGACTTACG
1 -CGAGGGTTTCGACAGCAGGATCGACAGCACGTAGA-GGGGGACCGGGTCGATCCCCGGCTTGCG
* * *
11858138 CATTCTGCCTCTCCGATCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
64 CATTCTGCCTCTTCGATCGGCTGAGCACCCGCACGCTCCTTTCGTGGGTTGGCTTAGGCATACGG
11858203 AGTTCATTCCATGTCTAAGC
129 AGTTCATTCCATGTCTAAGC
11858223 ATACGAAGTT
Statistics
Matches: 496, Mismatches: 109, Indels: 39
0.77 0.17 0.06
Matches are distributed among these distances:
157 1 0.00
158 41 0.08
159 436 0.88
160 18 0.04
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
CGAGGGTTTCGACAGCAGGATCGACAGCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCA
TTCTGCCTCTTCGATCGGCTGAGCACCCGCACGCTCCTTTCGTGGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGCCCCAGCCGGAC
Found at i:11858055 original size:318 final size:315
Alignment explanation
Indices: 11857409--11858222 Score: 1069
Period size: 318 Copynumber: 2.6 Consensus size: 315
11857399 AAGTATACGG
* * * * *
11857409 AGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGCAGCAGGATCGATAG-A-AT-G
1 AGTTCATTCCCAGTCTAAGATC-GACCGGA-CCAGGGTTACGACAGCAGGATCGACAGCACATAG
** *
11857471 CAGGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCAT
64 --GGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCACCCGCAC
* * *
11857536 GCCCTTTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAGTCGGACCGA
126 GCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGA
* * * * **
11857601 GGGTTTTGGCAGCGAGATCGGCAGCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTA
191 GGGTTGTGGCAGCGAGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCACGA
*
11857666 TGCCTCTTCGACTGGCTCAGCACCCGCACGCTCCTTTCGTGGGTTGAATTAGGCATACAA
256 TGCCTCTTCGACTGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGAATTAGGCATACAA
* * * *
11857726 AGTTTATTCCCAGTCCAAGATCAGACCGGACCAAGGGTTTCGACAGCAGGATTGACAGCACATAG
1 AGTTCATTCCCAGTCTAAGATC-GACCGGACC-AGGGTTACGACAGCAGGATCGACAGCACATAG
* * * * *
11857791 GGGGGGATCAGGTCGATCCCCGGCTTGCTCGTTCTACCTCTCCAGCCGGCTGAGCACCCGCACGC
64 GGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCACCCGCACGC
*
11857856 CCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
128 CCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
* * *
11857921 GTTGTGGCAGCGGGATCGATAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCACGATG
193 GTTGTGGCAGCGAGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCACGATG
* * * * *
11857986 CCTCTTTGA-TCGGCTTAGCGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACAA
258 CCTCTTCGACT-GGCTCAGCACCCGCACGCTCATTTCGTGGGTTGAATTAGGCATACAA
* * *
11858044 AGTTCATTCCCAGTCTAAGATCGAACCGGACTCAGGGTTACGACAGCAGGATCAACAGCACGTAA
1 AGTTCATTCCCAGTCTAAGATCG-ACCGGAC-CAGGGTTACGACAGCAGGATCGACAGCACATAG
* * * * *
11858109 TGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCACCTGCACGC
64 GGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCG-TCGGCTGAGCACCCGCACGC
* * *
11858174 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
128 CCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
11858223 ATACGAAGTT
Statistics
Matches: 431, Mismatches: 58, Indels: 15
0.86 0.12 0.03
Matches are distributed among these distances:
316 1 0.00
317 50 0.12
318 376 0.87
319 3 0.01
320 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (315 bp):
AGTTCATTCCCAGTCTAAGATCGACCGGACCAGGGTTACGACAGCAGGATCGACAGCACATAGGG
GGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGTCGGCTGAGCACCCGCACGCCCA
TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
GTGGCAGCGAGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCACGATGCCT
CTTCGACTGGCTCAGCACCCGCACGCTCATTTCGTGGGTTGAATTAGGCATACAA
Found at i:11860646 original size:157 final size:159
Alignment explanation
Indices: 11860383--11860849 Score: 519
Period size: 157 Copynumber: 2.9 Consensus size: 159
11860373 GATCGGATCA
* * * * *
11860383 GACCGAGGGTTGCGACAGTAGGATCGACAGCACGTAGGGGGGGCCGAGCCGATCACCGGCTTGCA
1 GACCGAGGGTTGCGACAGTAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCG
* * * * * * *
11860448 CATTCTGCCTCTCCGATCGGCTGAGCGCTCGCATGCCCGTTTCGT-GGTTGGCCTAGGCATAGGG
66 CATTCTGCCTCTTCGGTCGGCTGAGCGCTCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
*
11860512 AGTTCATTCCATGTCTAAGCCCCAG-CCG
131 AGTTCATTCCATGTCTAAGCACCAGACCG
* * * * * * *
11860540 GATCGAGGGTTGTGCCAGCAGGATCGGCAGCACGCAGAGGGGATCGGGCCGATCCCCGGCTTGCG
1 GACCGAGGGTTGCGACAGTAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCG
* * * *
11860605 CATTTTGCCTCTTCGGTCGGCTCAGCGCTCGTACGCTCGTTTCGTGGGTTGACTTATGCATACGG
66 CATTCTGCCTCTTCGGTCGGCTGAGCGCTCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
**
11860670 AGTTCATTCCCA-GTCTAAG-ATTAGACCG
131 AGTTCATT-CCATGTCTAAGCACCAGACCG
* ** * * ** * *
11860698 GACCGAGTGTTGCGGTAGTAGGATCGACAGTACGCAGGGGAGGACCAGGCCGATCCTTGACATGC
1 GACCGAGGGTTGCGACAGTAGGATCGACAGCACGCAGGGG-GGACCGGGCCGATCCCCGGCTTGC
* * * * * *
11860763 GCATTCTGCCTCTTCGGCCTGCTGAGTGCCCGTACGCTCCTTTCATGGGTTGGCTTAGGCATACG
65 GCATTCTGCCTCTTCGGTCGGCTGAGCGCTCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
11860828 GAGTTCATTCCATGTCTAAGCA
130 GAGTTCATTCCATGTCTAAGCA
11860850 TACGGAGTTC
Statistics
Matches: 253, Mismatches: 51, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
157 93 0.37
158 67 0.26
159 92 0.36
160 1 0.00
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
GACCGAGGGTTGCGACAGTAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCG
CATTCTGCCTCTTCGGTCGGCTGAGCGCTCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAAGCACCAGACCG
Found at i:11860851 original size:26 final size:26
Alignment explanation
Indices: 11860821--11860899 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
11860811 GTTGGCTTAG
11860821 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
11860847 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
11860873 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
11860899 G
1 G
11860900 ATTTTGAGCC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 48 0.94
27 3 0.06
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:11861969 original size:159 final size:157
Alignment explanation
Indices: 11861607--11862107 Score: 429
Period size: 159 Copynumber: 3.2 Consensus size: 157
11861597 CCCAGTCTAA
* * *
11861607 GCATACAGAGTTCATTCCTAGTCTAAGAACGAACCGGACCGAGGGTTACGGTAGCAGGATCGACA
1 GCATACAGAGTTCATTCC-AGTCTAAGAACGAACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
11861672 GCACGCTGGGGGGACCGAGCCGATCCCTGGCTTGCTCATTCTGCCTCTTCGACCGGCTAAGCGCC
65 GCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTAAGCGCC
* * *
11861737 CTCATGCCCGTTTCGTGGGTTGGCTTAG
130 CGCACGCCCGTTTCGTGGGTTGACTTAG
** * * * * * ** *
11861765 GCATAGGGAGTTCATTCCATGTCTAA-ACCCCAGCCAGGCCGAGGGTTGTGGCAGTGGGA-CAGG
1 GCATACAGAGTTCATTCCA-GTCTAAGA-ACGAACCAGACCGAGGGTTGCGGCAGCAGGATC-GA
* * * *
11861828 CAGCATGCAGAGGGGGACC-AGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGAGCAGCTCAG
63 CAGCACGCAG-GGGGGACCGA-GCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTAAG
* *
11861892 CGCCCGCACGCTCGTTTCGTTGGTTGACTTAG
126 CGCCCGCACGCCCGTTTCGTGGGTTGACTTAG
* * * * *
11861924 GCGTACAGAGTTCATTTCCAGTCTAAGAAAGGACCAGACCGAGGGTTGGGGTAGCAGGATCGACA
1 GCATACAGAGTTCA-TTCCAGTCTAAGAACGAACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * ** * * * *
11861989 GCACGCAAGGGGGATCGAGCC-AGTCCTCGACTTACGCA-TCTGCCCCTCCGGTCGGTTGAGCAC
65 GCACGCAGGGGGGACCGAGCCGA-TCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTAAGCGC
* *
11862052 CCGCACGCTCGTTTCATGGGTTAGA-TTAG
129 CCGCACGCCCGTTTCGTGGGTT-GACTTAG
*
11862081 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCA-GTCTAAG
11862108 CATATAGAGT
Statistics
Matches: 270, Mismatches: 61, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
156 5 0.02
157 64 0.24
158 76 0.28
159 118 0.44
160 7 0.03
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCAGTCTAAGAACGAACCAGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTAAGCGCCC
GCACGCCCGTTTCGTGGGTTGACTTAG
Found at i:11862111 original size:26 final size:26
Alignment explanation
Indices: 11862081--11862133 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11862071 GTTAGATTAG
*
11862081 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
11862107 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
11862133 G
1 G
11862134 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:11862460 original size:158 final size:158
Alignment explanation
Indices: 11862172--11862462 Score: 388
Period size: 158 Copynumber: 1.8 Consensus size: 158
11862162 TAGGACCAAT
* * * * * *
11862172 AGCAGGATCGACAGCGCACAGGGGGGATCGGGCTGATCCTCGGCTTTCGCATTCTGCCTCGTCGG
1 AGCAGGATCGACAGCACACAGGGGGGACCGGGCTGATCCTCGACTTACACATTCTGCCTCGTCGA
** * * *
11862237 TTGGCTGAGCGCCTGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
66 CCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
11862302 AAGATTGGATCGGATCGAGGGTTGCGGC
131 AAGATTGGATCGGATCGAGGGTTGCGGC
* * * *
11862330 AGCAGGATCGATAGCACGCAGGGGGGACCGGG-TCGGTCCTCGACTTACACATTCTGCCTCTTCG
1 AGCAGGATCGACAGCACACAGGGGGGACCGGGCT-GATCCTCGACTTACACATTCTGCCTCGTCG
* * *
11862394 ACCGACTGAGCGCCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGT
65 ACCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GT
11862458 CTAAG
129 CTAAG
11862463 CATACGGAGT
Statistics
Matches: 113, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
157 4 0.04
158 109 0.96
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
AGCAGGATCGACAGCACACAGGGGGGACCGGGCTGATCCTCGACTTACACATTCTGCCTCGTCGA
CCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATTGGATCGGATCGAGGGTTGCGGC
Found at i:11862472 original size:26 final size:26
Alignment explanation
Indices: 11862436--11862488 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11862426 GTTGGCTTAG
11862436 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11862462 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11862488 G
1 G
11862489 ATCAGACCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11862581 original size:355 final size:353
Alignment explanation
Indices: 11861839--11862650 Score: 993
Period size: 355 Copynumber: 2.3 Consensus size: 353
11861829 AGCATGCAGA
* * * * * *
11861839 GGGGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGAG-CAGCTCAGCGCCCGCACGC
1 GGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCT-CG-GTCGGCTGAGCGCCCGCACGC
* * *
11861903 TCGTTTCGTTGGTTGACTTAGGCGTACAGAGTTCATTTCCAGTCTAAGAAAGGACCAGACCGAGG
64 TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGAAAGGACCAGACCGAGG
* * * *
11861968 GTTGGGGTAGCAGGATCGACAGCACGCAAGGGGGATCGAGCCAGTCCTCGACTTACGCATCTGCC
129 GTTGCGGCAGCAGGATCGACAGCACGCAAGGGGGACCGAGCCAGTCCTCGACTTACACATCTGCC
** **
11862033 CCTCCGGTCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTAGATTAGGCATACGGAGTTCATTC
194 CCTCCGACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTAGATTAGGCATACGGAGTTCATTC
* * * * * *
11862098 CATGTCTAAGCATATAGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCCGACAGT
259 CATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCACACCGAGGGTTGCCGAAAGC
* * *
11862163 AGGACCAATAGCAGGATCGACAGCGCACAG
324 AGGACCAACAGCAGGATCGACAACACACAG
* * * *
11862193 GGGGGATCGGG-CTGATCCTCGGCTT-TCGCATTCTGCCTCGTCGGTTGGCTGAGCGCCTGCATG
1 GGGGGATCGGGTC-GATCCCCGGCTTGT-GCATTCTGCCTC-TCGGTCGGCTGAGCGCCCGCACG
* * * ** * * *
11862256 CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAG
63 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGAAAGGACCAGACCGAG
* * * * *
11862321 GGTTGCGGCAGCAGGATCGATAGCACGCAGGGGGGACCGGGTCGGTCCTCGACTTACACATTCTG
128 GGTTGCGGCAGCAGGATCGACAGCACGCAAGGGGGACCGAGCCAGTCCTCGACTTACACA-TCTG
* * * * * *
11862386 CCTCTTCGACCGACTGAGCGCCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCAT
192 CCCCTCCGACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTAGATTAGGCATACGGAGTTCAT
* *
11862451 TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCACACTGAGGGTTG-CGAAA
257 TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCACACCGAGGGTTGCCGAAA
* * * **
11862515 GCAGGACCAGCAGCAGGGTCGGCAACACGTAG
322 GCAGGACCAACAGCAGGATCGACAACACACAG
*
11862547 GAGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACGC
1 G-GGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTC-TCGGTCGGCTGAGCGCCCGCACGC
* *
11862612 TCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTTATTCC
64 TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC
11862651 ATGCCTAAGC
Statistics
Matches: 383, Mismatches: 67, Indels: 15
0.82 0.14 0.03
Matches are distributed among these distances:
353 2 0.01
354 179 0.47
355 200 0.52
356 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (353 bp):
GGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCGGTCGGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGAAAGGACCAGACCGAGGGT
TGCGGCAGCAGGATCGACAGCACGCAAGGGGGACCGAGCCAGTCCTCGACTTACACATCTGCCCC
TCCGACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTAGATTAGGCATACGGAGTTCATTCCA
TGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCACACCGAGGGTTGCCGAAAGCAG
GACCAACAGCAGGATCGACAACACACAG
Found at i:11862794 original size:171 final size:171
Alignment explanation
Indices: 11862561--11862926 Score: 520
Period size: 171 Copynumber: 2.1 Consensus size: 171
11862551 GGATCGGGTC
* *
11862561 GATCCCCGGCTTGTGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGTGCATTATGCCTCTTCGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTT
* * * *
11862626 GGCTTAGGCATACAGAGTTTATTCCATGCCTAAGCTCTAGCCGGATCGAGGGTTGTAGTAGCAGG
66 GGCTTAGGCATACAGAGTTCATTCCATGCCTAAGCCCTAGCCGGACCGAGGGTTGTAGTAGCAAG
* * *
11862691 ACTGGTAGTAGGATCGGTAGCATGCAGAGGGGGA-TCGAGCT
131 ACTGGCAGCAGGATAGGTAGCATGCAGAGGGGGACTCGA-CT
* ** * * * * *
11862732 GATCCCCAGCTTACGCATTATGCCTC-TCTGGTTGGTTGAGCTCCTGCATGCTCATTTCGTGGGT
1 GATCCCCGGCTTGTGCATTATGCCTCTTC-GGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGT
* *
11862796 TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGTAGCAA
65 TGGCTTAGGCATACAGAGTTCATTCCATGCCTAAGCCCTAGCCGGACCGAGGGTTGTAGTAGCAA
*
11862861 GACTGGCAGCAGGATAGGTAGCATGCAGAGGGGGACTGGACT
130 GACTGGCAGCAGGATAGGTAGCATGCAGAGGGGGACTCGACT
11862903 GATCCCCGGCTTGTGCATTATGCC
1 GATCCCCGGCTTGTGCATTATGCC
11862927 ACTCCTATTG
Statistics
Matches: 170, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
170 2 0.01
171 165 0.97
172 3 0.02
ACGTcount: A:0.18, C:0.24, G:0.31, T:0.26
Consensus pattern (171 bp):
GATCCCCGGCTTGTGCATTATGCCTCTTCGGTCGGCTGAGCACCCGCACGCTCATTTCGTGGGTT
GGCTTAGGCATACAGAGTTCATTCCATGCCTAAGCCCTAGCCGGACCGAGGGTTGTAGTAGCAAG
ACTGGCAGCAGGATAGGTAGCATGCAGAGGGGGACTCGACT
Found at i:11863025 original size:26 final size:26
Alignment explanation
Indices: 11862988--11863040 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11862978 GTTGACTTAG
11862988 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* *
11863014 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
11863040 G
1 G
11863041 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:11863514 original size:158 final size:156
Alignment explanation
Indices: 11863014--11863505 Score: 479
Period size: 158 Copynumber: 3.1 Consensus size: 156
11863004 CCCAGTCTAA
* *
11863014 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGGAGCAAGATCGGTA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGAGCAAGATCGATA
* ** * * * *
11863079 GCACGCAGGGGGGACCGGGTCGATCCCTAGCTTGCGTATTCTACCTCTCCGGCTGGCTAAGCACC
66 GCACGCAGGGGGG-CCGGGTAG-TCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCGCC
* *
11863144 CGCACGCCCATTTCGTGGGTTGGCTTAG
129 CGAACGCTCATTTCGTGGGTTGGCTTAG
** ** * **
11863172 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGGAGCGGGATC-A
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGGAGCAAGATCGA
* * * * * *
11863234 GCAGCACGCAGAGGGGGACGGATTTA-TCCCCGGCTTGCGCATTATGCCTCTCCGGCCAGCTCAG
64 -TAGCACGCAG-GGGGGCCGG--GTAGTCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTAAG
* * ** *
11863298 CGCCTGAACGCTCTTTTTATGGGTTGACTTAG
125 CGCCCGAACGCTCATTTCGTGGGTTGGCTTAG
* * * * * * *
11863330 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGTGATGCAGTAGCAAGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGAGCAAGATCGATA
* * * * *
11863395 GCATGCAGGGGGGCCCGGGTAAGTCCCCGGCTGGTGCATTCTGCCTCTCCGACCGGCTGAGCGCC
66 GCACGCAGGGGGG-CCGGGT-AGTCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCGCC
* *
11863460 CGTACGCTCGTTTCGTGGGTTGGCTTAG
129 CGAACGCTCATTTCGTGGGTTGGCTTAG
11863488 GCATACAGAGTTCATTCC
1 GCATACAGAGTTCATTCC
11863506 ATTTCTAAGC
Statistics
Matches: 264, Mismatches: 58, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 10 0.04
158 241 0.91
159 11 0.04
160 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGAGCAAGATCGATA
GCACGCAGGGGGGCCGGGTAGTCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTAAGCGCCCG
AACGCTCATTTCGTGGGTTGGCTTAG
Found at i:11863538 original size:26 final size:26
Alignment explanation
Indices: 11863488--11863540 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11863478 GTTGGCTTAG
*
11863488 GCATACAGAGTTCATTCCATTTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
11863514 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
11863540 G
1 G
11863541 ATCCGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:11864069 original size:26 final size:26
Alignment explanation
Indices: 11864039--11864091 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11864029 GTTGGCTTAG
11864039 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
11864065 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11864091 G
1 G
11864092 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11865595 original size:26 final size:26
Alignment explanation
Indices: 11865564--11865616 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11865554 GTTGGCTTAG
11865564 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11865590 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11865616 G
1 G
11865617 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11865898 original size:13 final size:13
Alignment explanation
Indices: 11865880--11865915 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
11865870 TGCGCATTAT
11865880 GCCTCTCCGACCG
1 GCCTCTCCGACCG
11865893 GCCTCTCCGACCG
1 GCCTCTCCGACCG
11865906 GCCTCTCCGA
1 GCCTCTCCGA
11865916 TAAGCTGAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.08, C:0.53, G:0.22, T:0.17
Consensus pattern (13 bp):
GCCTCTCCGACCG
Found at i:11866716 original size:196 final size:184
Alignment explanation
Indices: 11866522--11866868 Score: 380
Period size: 184 Copynumber: 1.9 Consensus size: 184
11866512 GCAGCAGGAC
* * * * * *
11866522 CAGCAGCAGGATCGACAGCACGCA-AGGGGGATCGGGTCGATCC-CTGGCTTACGCATTCTGCCT
1 CAGCAGCAGGACCGACAGTACGCAGA-GGGGAACGGGCCAATCCTC-GGCTTACGCATTCTACCT
* * * * *
11866585 TTCAGGCCGACTGAGAGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCC
64 CTCAGACCGACTGAGAGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
* * *
11866650 CTGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCTA-ACCGGACCGAGGGTTG
129 ATGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATC-AGACCGGACCAAGGGTTA
** * * * *
11866706 TGGTAGCAGGATCGATAGTACGCAGAGGGGAACGGGCCAATCCTCGGCTTATGCATTCTACCTCT
1 CAGCAGCAGGACCGACAGTACGCAGAGGGGAACGGGCCAATCCTCGGCTTACGCATTCTACCTCT
* ** * * *
11866771 CTGACCGGTTGAGCGCCTGCACGC-CGTTACATGGGTTGGCTTAGGCATACAGG-GTTCATTCCA
66 CAGACCGACTGAGAGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC-GGAGTTCATTCCA
*
11866834 TGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
130 TGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGA
11866869 GTTTGAGCCA
Statistics
Matches: 137, Mismatches: 23, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
183 65 0.47
184 70 0.51
185 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (184 bp):
CAGCAGCAGGACCGACAGTACGCAGAGGGGAACGGGCCAATCCTCGGCTTACGCATTCTACCTCT
CAGACCGACTGAGAGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
GTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTA
Found at i:11866848 original size:183 final size:184
Alignment explanation
Indices: 11866526--11866868 Score: 451
Period size: 183 Copynumber: 1.9 Consensus size: 184
11866516 CAGGACCAGC
* * * * * *
11866526 AGCAGGATCGACAGCACGCAAGGGGGATCGGGTCGATCCCTGGCTTACGCATTCTGCCTTTCAGG
1 AGCAGGATCGACAGCACGCAAGGGGGAACGGGCCAATCCCTGGCTTACGCATTCTACCTCTCAGA
* * *
11866591 CCGACTGAGAGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCTGTCT
66 CCGACTGAGAGCCCGCACGCTCGTTACATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCT
*
11866656 AAGCATACAGAGTTCATTCCTAGTCTAAGATCTAACCGGACCGAGGGTTGTGGT
131 AAGCATACAGAGTTCATTCCCAGTCTAAGATCTAACCGGACCGAGGGTTGTGGT
* * * *
11866710 AGCAGGATCGATAGTACGC-AGAGGGGAACGGGCCAAT-CCTCGGCTTATGCATTCTACCTCTCT
1 AGCAGGATCGACAGCACGCAAG-GGGGAACGGGCCAATCCCT-GGCTTACGCATTCTACCTCTCA
** * * * *
11866773 GACCGGTTGAGCGCCTGCACGC-CGTTACATGGGTTGGCTTAGGCATACAGG-GTTCATTCCATG
64 GACCGACTGAGAGCCCGCACGCTCGTTACATGGGTTGACTTAGGCATAC-GGAGTTCATCCCATG
11866836 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
128 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
11866869 GTTTGAGCCA
Statistics
Matches: 136, Mismatches: 20, Indels: 7
0.83 0.12 0.04
Matches are distributed among these distances:
183 70 0.51
184 66 0.49
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (184 bp):
AGCAGGATCGACAGCACGCAAGGGGGAACGGGCCAATCCCTGGCTTACGCATTCTACCTCTCAGA
CCGACTGAGAGCCCGCACGCTCGTTACATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCT
AAGCATACAGAGTTCATTCCCAGTCTAAGATCTAACCGGACCGAGGGTTGTGGT
Found at i:11866853 original size:26 final size:26
Alignment explanation
Indices: 11866815--11866867 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11866805 GTTGGCTTAG
*
11866815 GCATACAGGGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
11866841 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11866867 G
1 G
11866868 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11867575 original size:26 final size:26
Alignment explanation
Indices: 11867545--11867597 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11867535 GTTGACTTAG
11867545 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
11867571 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11867597 G
1 G
11867598 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11868248 original size:26 final size:26
Alignment explanation
Indices: 11868212--11868264 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11868202 GTTGACTTAG
11868212 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
11868238 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11868264 G
1 G
11868265 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11868625 original size:26 final size:26
Alignment explanation
Indices: 11868581--11868630 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
11868571 TTGACTTAGG
*
11868581 CATACGAAGTTTATCCCCAATCTAAA
1 CATACGAAGTTCATCCCCAATCTAAA
* *
11868607 CATACGAAGTTCATTCCCAGTCTA
1 CATACGAAGTTCATCCCCAATCTA
11868631 TGATCGATCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.34, C:0.28, G:0.10, T:0.28
Consensus pattern (26 bp):
CATACGAAGTTCATCCCCAATCTAAA
Found at i:11869111 original size:26 final size:26
Alignment explanation
Indices: 11869081--11869133 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11869071 GTTGGCTTAG
11869081 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
11869107 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
11869133 G
1 G
11869134 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11869418 original size:514 final size:514
Alignment explanation
Indices: 11868746--11869817 Score: 1346
Period size: 514 Copynumber: 2.1 Consensus size: 514
11868736 CGCACGTCCA
*
11868746 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTT
* * * *
11868811 GTGGCAGCAGGACTGGTAGCACGTAGAAGGGGATCGGGCCGATCCCCGACTTGCACATTATGACT
66 GTGGCAGCAGGACTGGCAGCACGCAGAAGGGGACCGAGCCGATCCCCGACTTGCACATTATGACT
* ** * * * * * *
11868876 CTTCAGTTGGCTCAGCACTCGTACGCTCGTTTCATGGTTTGACTTATGCATGCGGAGTTCATTCC
131 CTCCAGCCGACTCAGCACTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC
* *
11868941 CAGTCTAAGATCGAATCAGACCGAGGTTTGT-GGCAGCAGGATCGACAGCACCCAGGGGGGATCA
196 CAGTCTAAGATCGAATCAGACCGAGGGTTCTAGGC-GCAGGATCGACAGCACCCAGGGGGGATCA
* * * * * * * * *
11869005 GGCTAATCCTCGGCTTGCGCATTTTGCCTCTCTGACCGGTTGAGTGCCCGTACGCTCGTTTCATG
260 GGCCAATCCCCGACTTGCGCATTCTACCTCTCTGACCGGCTAAGCGCCCGCACGCTCGTTTCATG
11869070 GGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
325 GGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
* * *
11869135 TCGAACTGGACCAAAGGTT-GCGACCA-CAGGACTAGCAGCAGGATTGGCAGCACGCAGGGGAGG
390 TCGAACCGGACCAAAGGTTAG-G-CCAGCAGGACCAGCAGCAGGATTGGCAGCACACAGGGGAGG
* * * * *
11869198 ACCGGGTCGATCCCCGACTTGCGCATTCTGCCTC-TCCACCCGGCTGAGCTCCCT-CACACTCG
453 ACCAGGCCGATCCCCGACTTGCACATTCTACCTCTTCCA-CCGGCTGAAC-CCCTGCACACTCG
* * **
11869260 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTT
** * * * * * *
11869325 GTGGCAGTGGGACTGGCAGCATGCAGAGGGGGACCGAGCCGATCCCTGGCTTGTACATTATGCCT
66 GTGGCAGCAGGACTGGCAGCACGCAGAAGGGGACCGAGCCGATCCCCGACTTGCACATTATGACT
* * * *
11869390 CTCCGGCCGACTCAGCGC-CTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTTATTC
131 CTCCAGCCGACTCAGCACTC-GCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTC
* * * * * * * * *
11869454 CCAGTCTAATATTGAATCGGATCGAGGGTTCTAGTCGTAGGATTGACAGCACGCAGGGGGGATCG
195 CCAGTCTAAGATCGAATCAGACCGAGGGTTCTAGGCGCAGGATCGACAGCACCCAGGGGGGATCA
* * *
11869519 GGCCGATCCCCGACTTGCGCATTCTACCTCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTG
260 GGCCAATCCCCGACTTGCGCATTCTACCTCTCTGACCGGCTAAGCGCCCGCACGCTCGTTTCATG
* *
11869584 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
325 GGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
* * * * * * * * *
11869649 TCGGACCGGACCGAGGGTTAGGGCAGTAGGACCAGCAGTAGGATTGGCAGTACACAGGGGGGGAT
390 TCGAACCGGACCAAAGGTTAGGCCAGCAGGACCAGCAGCAGGATTGGCAGCACACAGGGGAGGAC
* * * **
11869714 CAGGCCGATCCCCGGCTTGCACATTCTACCTCTTCGACCGGCTGAACGCCTGCACGTTCG
455 CAGGCCGATCCCCGACTTGCACATTCTACCTCTTCCACCGGCTGAACCCCTGCACACTCG
*
11869774 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
11869818 ACATACAGAG
Statistics
Matches: 474, Mismatches: 78, Indels: 12
0.84 0.14 0.02
Matches are distributed among these distances:
513 6 0.01
514 462 0.97
515 6 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (514 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGTT
GTGGCAGCAGGACTGGCAGCACGCAGAAGGGGACCGAGCCGATCCCCGACTTGCACATTATGACT
CTCCAGCCGACTCAGCACTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC
CAGTCTAAGATCGAATCAGACCGAGGGTTCTAGGCGCAGGATCGACAGCACCCAGGGGGGATCAG
GCCAATCCCCGACTTGCGCATTCTACCTCTCTGACCGGCTAAGCGCCCGCACGCTCGTTTCATGG
GTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
CGAACCGGACCAAAGGTTAGGCCAGCAGGACCAGCAGCAGGATTGGCAGCACACAGGGGAGGACC
AGGCCGATCCCCGACTTGCACATTCTACCTCTTCCACCGGCTGAACCCCTGCACACTCG
Found at i:11869594 original size:158 final size:158
Alignment explanation
Indices: 11869169--11869621 Score: 525
Period size: 159 Copynumber: 2.9 Consensus size: 158
11869159 CACAGGACTA
* *
11869169 GCAGCAGGATTGGCAGCACGCAGGGGAGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTC
1 GCAGTAGGATTGGCAGCACGCAGGGG-GGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTC
** * * * *
11869234 CACCCGGCTGAGCTCCCTCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
65 CGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * *
11869299 TCTAAGCCCCAGTCGGACTGAGGGTTGTG
130 TCTAAGACCCAATCGGACTGAGGGTTCTG
* * * * * * ** *
11869328 GCAGTGGGACTGGCAGCATGCAGAGGGGGACCGAGCCGATCCCTGGCTTGTACATTATGCCTCTC
1 GCAGTAGGATTGGCAGCACGCAG-GGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTC
* * * * * *
11869393 CGGCCGACTCAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTTATTCCCA-
65 CGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAT
* ***
11869457 GTCTAATATTGAATCGGA-TCGAGGGTTCTAG
129 GTCTAAGACCCAATCGGACT-GAGGGTTCT-G
* * * * *
11869488 TC-GTAGGATTGACAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTACCTCTCT
1 GCAGTAGGATTGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCC
11869552 GGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 GGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
11869617 CTAAG
131 CTAAG
11869622 CATACGGAGT
Statistics
Matches: 239, Mismatches: 50, Indels: 11
0.80 0.17 0.04
Matches are distributed among these distances:
157 3 0.01
158 93 0.39
159 135 0.56
160 8 0.03
ACGTcount: A:0.17, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
GCAGTAGGATTGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCC
GGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGACCCAATCGGACTGAGGGTTCTG
Found at i:11869631 original size:26 final size:26
Alignment explanation
Indices: 11869595--11869647 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11869585 GTTGGCTTAG
11869595 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11869621 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11869647 G
1 G
11869648 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:11869843 original size:26 final size:26
Alignment explanation
Indices: 11869793--11869843 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11869783 TTGGCTTAGG
*
11869793 CATACAGAGTTCATTCCATGTCTAAA
1 CATACAGAGTTCATTCCATGCCTAAA
11869819 CATACAGAGTTCATTCC-TAGCCTAA
1 CATACAGAGTTCATTCCAT-GCCTAA
11869844 GATTTTCAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCATGCCTAAA
Found at i:11869846 original size:197 final size:196
Alignment explanation
Indices: 11869490--11869846 Score: 547
Period size: 197 Copynumber: 1.8 Consensus size: 196
11869480 GGTTCTAGTC
* * * *
11869490 GTAGGATTGACAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTACCTCTCTGGC
1 GTAGGATTGACAGCACACAGGGGGGATCAGGCCGATCCCCGACTTGCACATTCTACCTCTCTGAC
*
11869555 CGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
66 CGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
* * *
11869620 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTAGGGCAGTAGGACCAGC
131 AACATACAGAGTTCATTCCCAGCCTAAGATCGGACCGGACCGAGGGTTAGGGCAGTAGGACCAGC
11869685 A
196 A
* * *
11869686 GTAGGATTGGCAGTACACAGGGGGGGATCAGGCCGATCCCCGGCTTGCACATTCTACCTCT-TCG
1 GTAGGATTGACAGCACACA-GGGGGGATCAGGCCGATCCCCGACTTGCACATTCTACCTCTCT-G
* *
11869750 ACCGGCTGAA-CGCCTGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
64 ACCGGCT-AAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
*
11869814 CTAAACATACAGAGTTCATTCCTAGCCTAAGAT
128 CTAAACATACAGAGTTCATTCCCAGCCTAAGAT
11869847 TTTCAGCCAC
Statistics
Matches: 144, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
196 17 0.12
197 125 0.87
198 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (196 bp):
GTAGGATTGACAGCACACAGGGGGGATCAGGCCGATCCCCGACTTGCACATTCTACCTCTCTGAC
CGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
AACATACAGAGTTCATTCCCAGCCTAAGATCGGACCGGACCGAGGGTTAGGGCAGTAGGACCAGC
A
Found at i:11870549 original size:26 final size:26
Alignment explanation
Indices: 11870513--11870565 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11870503 GTTGACTTAG
11870513 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
11870539 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
11870565 G
1 G
11870566 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:11870735 original size:26 final size:26
Alignment explanation
Indices: 11870699--11870749 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11870689 TGGCTTAGGT
11870699 ATACGGAGTTCATTCC-ATGTCTAAGC
1 ATACGGAGTTCATTCCTA-GTCTAAGC
11870725 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATTCCTAGTCTAAG
11870750 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCTAGTCTAAGC
Found at i:11870750 original size:184 final size:189
Alignment explanation
Indices: 11870441--11870945 Score: 626
Period size: 197 Copynumber: 2.7 Consensus size: 189
11870431 CCATCCGTTT
* * * *
11870441 GATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGACTGAGCGCCCGCACGCTCATTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCGTGGGTT
* * * * *
11870506 GACTTAGGCATACGGAGTTCATCCCCA-ATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
66 GGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCA
* * **
11870570 GACCGGACCGAGGGT-TGT-GG-TAGC-AGGATAGACAGCATGTA-GGGGAGATCAGGCC
130 AACCGGACCGAGGGTGAGTAGGATAGCAAGGATAGACAGCACATAGGGGGAGATCAGGCC
* * * * *
11870625 GATCCCCAGCTTACGCATTCTTCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCGTGGGTT
*
11870690 GGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAA
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAA
* * * *
11870755 ACCGGACTGAGGGTAGGGGCAGTAGGACTAGCAGTAGGATTGGCAGCACATAGGGGGGGATCAGG
131 ACCGGACCGAGGGT----G-AGTAGGA-TAGCA--AGGATAGACAGCACATAGGGGGAGATCAGG
11870820 CC
188 CC
* * **
11870822 GATCCCCGGCTTGCGCATTCTACCTCTTCGATCGACTGAGCGCCTGCACATTCATTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCGTGGGTT
* *
11870887 GGCTTAGGCATACGAAGTTCATTCCATGTCTAAACATACGGAGTTCATTCCTAGTCTAA
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAA
11870946 AATTTTCAGC
Statistics
Matches: 273, Mismatches: 34, Indels: 15
0.85 0.11 0.05
Matches are distributed among these distances:
183 3 0.01
184 124 0.45
190 2 0.01
191 2 0.01
193 4 0.01
196 13 0.05
197 125 0.46
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (189 bp):
GATCCCCGGCTTGCGCATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAA
ACCGGACCGAGGGTGAGTAGGATAGCAAGGATAGACAGCACATAGGGGGAGATCAGGCC
Found at i:11870931 original size:26 final size:26
Alignment explanation
Indices: 11870895--11870946 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11870885 TTGGCTTAGG
11870895 CATACGAAGTTCATTCC-ATGTCTAAA
1 CATACGAAGTTCATTCCTA-GTCTAAA
*
11870921 CATACGGAGTTCATTCCTAGTCTAAA
1 CATACGAAGTTCATTCCTAGTCTAAA
11870947 ATTTTCAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (26 bp):
CATACGAAGTTCATTCCTAGTCTAAA
Found at i:11871650 original size:26 final size:26
Alignment explanation
Indices: 11871614--11871666 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11871604 GTTGACTTAG
11871614 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
11871640 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
11871666 G
1 G
11871667 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:11872172 original size:157 final size:155
Alignment explanation
Indices: 11871640--11872172 Score: 459
Period size: 158 Copynumber: 3.4 Consensus size: 155
11871630 CCCAGTCTAA
* * *
11871640 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAG-TCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * ** *
11871705 GCACGCAGGGGGGATCGGGCCGATCCCCTG-CTTACGCATTCTGCCTGTCCTACCGGTTGAGTGC
65 GCACGAAGGGGGGACCGGGCCGATCCTC-GACTTGCGCATTCTGCCTCTCCGGCC-GCTGAGT-C
*
11871769 CCGT-ACGC-CTGTTTCGTGGGTTGGCTTAG
127 CC-TCACGCTC-GTTTCATGGGTTGGCTTAG
* * * * * *
11871798 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAGTCAGACCGA-GGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCCA-GTCTAAGACC-AGTCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
11871861 AGCACGAAGAGGAGGACTGGGCCGATCCTC-AGCTTGCGCATTATACCTCTCCGGCCGACTCAAG
64 AGCACGAAG-GGGGGACCGGGCCGATCCTCGA-CTTGCGCATTCTGCCTCTCCGGCCG-CT-GAG
* * * * *
11871925 GCCCGCATGCTCATTTCATGGGTTGACTTAG
125 TCCCTCACGCTCGTTTCATGGGTTGGCTTAG
* *** * * * * *
11871956 GCATACGGAGTTCATTCCCAGTATAAGATTGGACTGGACTGAGGGTTGCGGTAGTAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGTC-GGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
11872021 GCACGTAGGGGGGACCGGGCTGATCCTCGACTTGCACAGTCTGCCTCTTCGGCCAGCTGAGTCCC
65 GCACGAAGGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCC-GCTGAGTCCC
11872086 TCACGCTCGTTTCATGGGTTGGCTTAG
129 TCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
11872113 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAGTCGGACCGAGGGATGTGGCAACAGGAT
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGTCGGACCGAGGGTTGCGGCAGCAGGAT
11872173 TAGTAGTAGG
Statistics
Matches: 289, Mismatches: 70, Indels: 33
0.74 0.18 0.08
Matches are distributed among these distances:
156 3 0.01
157 100 0.35
158 153 0.53
159 33 0.11
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCAGTCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGAAGGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCCGCTGAGTCCCTC
ACGCTCGTTTCATGGGTTGGCTTAG
Found at i:11872313 original size:26 final size:26
Alignment explanation
Indices: 11872284--11872336 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11872274 GTTGACTTAG
11872284 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
11872310 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
11872336 G
1 G
11872337 ATCAGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:11874413 original size:26 final size:26
Alignment explanation
Indices: 11874377--11874426 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
11874367 TGACTAAGGT
*
11874377 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACAGAGTTCATCCCCAGTCTAAGC
* *
11874403 ATACAGAGTTCATTCCCATTCTAA
1 ATACAGAGTTCATCCCCAGTCTAA
11874427 CATCGAACCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGC
Found at i:11874598 original size:184 final size:190
Alignment explanation
Indices: 11874381--11874782 Score: 426
Period size: 196 Copynumber: 2.1 Consensus size: 190
11874371 TAAGGTATAC
* **
11874381 GGAGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCCCATTCTAACATCGA-ACCAGACCGAG
1 GGAGTTCAT-TCCATGTCTAAGCATACAGAGTTCATTCCCAGCCTAACATC-ATACCAGACCGAG
*
11874444 CACTGTGATAGCAAGATCGACAGC-A-C-GCA-G-A-GGGGA-TCGAGTCGATCCCCGGCTTGCG
64 CACTGTGATAGCAAGATCGACAGCGATCAGCACGCAGGGGGACT-GAGCCGATCCCCGGCTTGCG
* ** * * ** *
11874502 CATTCTGCCTCTTCGGCTGGCTGAGCACCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAG
128 CATTCTGCCTCTCCGGCCAGCTGAGCACCCACACGCCCATTTCATGGGTTGGATTAGGCATAG
* ** * * * **
11874565 GGAGTTTATTCCATGTCTAAGCATATGGAGTTCATTCCCAGCCTAAGATCATATCGGACCGAGGG
1 GGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGCCTAACATCATACCAGACCGAGCA
* * *
11874630 TTGTGGTAGCAGGATCGACAGCGGGATCGAGAGCACGCAGGGGGGACTGAGCCGATCCCCGGCTT
66 CTGTGATAGCAAGATCGACAGC--GATC---AGCACGCA-GGGGGACTGAGCCGATCCCCGGCTT
* * *
11874695 GTGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCACATGCCCATTTCATGGGTTGGATTAGGCATA
125 GCGCATTCTGCCTCTCCGGCCAGCTGAGCACCCACACGCCCATTTCATGGGTTGGATTAGGCATA
11874760 G
190 G
11874761 GGAGTTCATTCCATGTCTAAGC
1 GGAGTTCATTCCATGTCTAAGC
11874783 CCCAGCCGGA
Statistics
Matches: 176, Mismatches: 27, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
183 4 0.02
184 67 0.38
187 1 0.01
188 1 0.01
192 3 0.02
193 1 0.01
194 1 0.01
196 97 0.55
197 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (190 bp):
GGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGCCTAACATCATACCAGACCGAGCA
CTGTGATAGCAAGATCGACAGCGATCAGCACGCAGGGGGACTGAGCCGATCCCCGGCTTGCGCAT
TCTGCCTCTCCGGCCAGCTGAGCACCCACACGCCCATTTCATGGGTTGGATTAGGCATAG
Found at i:11874610 original size:26 final size:26
Alignment explanation
Indices: 11874559--11874611 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
11874549 GTTGGCTTAG
* *
11874559 GCATAGGGAGTTTATTCCATGTCTAA
1 GCATAGGGAGTTCATTCCATGCCTAA
*
11874585 GCATATGGAGTTCATTCCCA-GCCTAA
1 GCATAGGGAGTTCATT-CCATGCCTAA
11874611 G
1 G
11874612 ATCATATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCATGCCTAA
Found at i:11874930 original size:12 final size:12
Alignment explanation
Indices: 11874913--11874943 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
11874903 GTGCTGGTAC
11874913 TTGGCCCTTATA
1 TTGGCCCTTATA
11874925 TTGGCCCTTATA
1 TTGGCCCTTATA
11874937 TTGGCCC
1 TTGGCCC
11874944 CCTATCACTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.29, G:0.19, T:0.39
Consensus pattern (12 bp):
TTGGCCCTTATA
Found at i:11875636 original size:26 final size:26
Alignment explanation
Indices: 11875607--11875657 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
11875597 TTGACTTAGG
11875607 CATACGGAGTTTATCCCCAGTCTAAT
1 CATACGGAGTTTATCCCCAGTCTAAT
* * *
11875633 CATATGGAGTTTATTCCTAGTCTAA
1 CATACGGAGTTTATCCCCAGTCTAA
11875658 GATCGAACAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (26 bp):
CATACGGAGTTTATCCCCAGTCTAAT
Found at i:11875712 original size:184 final size:184
Alignment explanation
Indices: 11875382--11875794 Score: 562
Period size: 184 Copynumber: 2.2 Consensus size: 184
11875372 CCTCTCTGGT
*
11875382 CGGCTGAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTTATCCCCAGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTTATCCCCAGTCTA
* * * * *
11875447 AGCATACGGAGTTCATTTCCACTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGTAGGATCGAC
66 AGCATACGGAGTTCATTTCCACTCTAAGATCGAACAGGACCGAGGGTTGCGGCAGTACGATCGAC
* * *
11875512 AGCACGCAGGGGGGATCAAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAC
131 AGCACACAGAGGGGATCAAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGAC
*
11875566 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTTATCCCCAGTCTA
* * * * * *
11875631 ATCATATGGAGTTTA-TTCCTAGTCTAAGATCGAACAGGATCGAGGGTTGCGGTAGTACGATC-A
66 AGCATACGGAGTTCATTTCC-ACTCTAAGATCGAACAGGACCGAGGGTTGCGGCAGTACGATCGA
** * * *
11875694 GCAGCACACAGAGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGGCTCTCCTAC
130 -CAGCACACAGAGGGGATCAAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGAC
* * *
11875750 TGGCTGAGCGCCCGCACAC-CTGTTTCATGGGTTGACTTAGGCATA
1 CGGCTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATA
11875795 GGGACTTCAT
Statistics
Matches: 202, Mismatches: 24, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
183 6 0.03
184 196 0.97
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (184 bp):
CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTTATCCCCAGTCTA
AGCATACGGAGTTCATTTCCACTCTAAGATCGAACAGGACCGAGGGTTGCGGCAGTACGATCGAC
AGCACACAGAGGGGATCAAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGAC
Found at i:11876206 original size:158 final size:157
Alignment explanation
Indices: 11875633--11876222 Score: 481
Period size: 158 Copynumber: 3.7 Consensus size: 157
11875623 CCAGTCTAAT
* * * * * * * * *
11875633 CATATGGAGTTTATTCCTAGTCTAAGATC-GAACAGGATCGAGGGTTGCGGTAGTACGATC-AGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGTGGCAGCAGGATCGA-C
* * ** * * ** **
11875696 AGCACACAGAGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGGCTCTCCTACTGGCTGAGCGC
64 AGCACGCAGGGGGGA-CCAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGC
*
11875761 CCGCACAC-CTGTTTCATGGGTTGACTTAGG
128 CCGCACGCTC-GTTTCATGGGTTGACTTAGG
* * ** * * * *
11875791 CATAGGGACTTCATT-CCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGCGGGACCGGC
1 CATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * * * * *
11875854 AGCACGCAGACGGGGACCAGGCCGATCCCTGGCTTGTGCATTATGGCTCTTCGGTCAGCTCAACG
64 AGCACGCAG-GGGGGACCA-GCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCG
* * *
11875919 CCTGAACGCTCGTTTCATGGGTTGACTTTGG
127 CCCGCACGCTCGTTTCATGGGTTGACTTAGG
** * * * * * * *
11875950 CATACAAAGTTCATTCCCAATCTAACATCGGACCAGACCGATGATTGTGGGAGCAGGATCGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAG
* * * *
11876015 CACGCAGGGGGGACCGAG-CTAGTCCTCGGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGCGCC
66 CACGCAGGGGGGACC-AGCCGA-TCCCCGACTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCC
**
11876079 CGCACGCTCGTTTTGTGGGTTGACTTAGG
129 CGCACGCTCGTTTCATGGGTTGACTTAGG
* * **
11876108 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAGGATCGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAG
* *
11876173 CATGCAGGGGGGACCATGCCGATCCCCGACTTGCGTATTCTGCCTCTCCG
66 CACGCAGGGGGGACCA-GCCGATCCCCGACTTGCGCATTCTGCCTCTCCG
11876223 ATCGGCTTAC
Statistics
Matches: 330, Mismatches: 89, Indels: 26
0.74 0.20 0.06
Matches are distributed among these distances:
157 5 0.02
158 206 0.62
159 114 0.35
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAG
CACGCAGGGGGGACCAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTGACTTAGG
Found at i:11876980 original size:26 final size:26
Alignment explanation
Indices: 11876944--11876996 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11876934 GTTGACTTAG
*
11876944 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
11876970 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
11876996 G
1 G
11876997 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:11877338 original size:183 final size:184
Alignment explanation
Indices: 11876918--11877338 Score: 555
Period size: 183 Copynumber: 2.3 Consensus size: 184
11876908 CTGAGCGTCT
* *
11876918 GCACGCTCATTT-GTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
*
11876982 CATTCCCAATCTAAGATCGGACCGAACCGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGG
66 CATTCCCAATCTAAGATCAGACCGAACCGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGG
* * *
11877047 GATCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGTGCCC
131 GATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCC
* * *
11877101 GCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATATGGAGTT
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
* * * * * *
11877166 TATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTG-GGTAGTAGGATC-AGCAGCACGCAGGGG
66 CATTCCCAATCTAAGATCAGACCGAACCGAGGGTTGTGGCAGTAGGATCGA-CAGCACGCAGGGG
* * * * *
11877229 GGATCGGGTCGATCCCCGATTTGCGCATTCTGGCTCTCCTACTGGCTGAGTGCCC
130 GGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCC
** * * *
11877284 GCACGCAT-GTTTCATGGGTTGGTTTAGGCATAGGGACTTCAT-TCCATGTCTAAGC
1 GCACGC-TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
11877339 CCCAGCCGAA
Statistics
Matches: 207, Mismatches: 27, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
182 4 0.02
183 124 0.60
184 79 0.38
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.25
Consensus pattern (184 bp):
GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
CATTCCCAATCTAAGATCAGACCGAACCGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGG
GATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCC
Found at i:11877810 original size:158 final size:158
Alignment explanation
Indices: 11877154--11877811 Score: 614
Period size: 158 Copynumber: 4.2 Consensus size: 158
11877144 CCCAATCTAA
* * * * * *
11877154 GCATATGGAGTTTATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTG-GGTAGTAGGATC-AGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCGA-C
* * * * * ** *
11877217 AGCACGCAGGGGGGATCGGGTCGATCCCCGATTTGCGCATTCTGGCTCTCCTACTGGCTGAGTGC
65 AGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGC
* **
11877282 CCGCACGCAT-GTTTCATGGGTTGGTTTAG
130 CCACACGC-TCGTTTCATGGGTTGACTTAG
* * * ** * * *
11877311 GCATAGGGACTTCATT-CCATGTCTAAG-CCCCAGCCGAACCTAGGGTTGTGGTAGCGGGATCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGTGGTAGCAGGATCGA
* * * * * * * * * *
11877374 CAGTACGCAGACGGGGACCAGGCCGATCCCTGGCTTGCGCATTATGGCTCTCCCG-TCGGTTCAA
64 CAGCACGCAG-GGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCT-GGCTGAG
* *
11877438 CGCCCGA-ACGCTCGTTTCGTGGGTTGACTTTG
127 CGCCC-ACACGCTCGTTTCATGGGTTGACTTAG
* * * * *
11877470 GCATACGAAGTTCATTCCCAATCTAAGATCGGACTGGACCGATGGTTGTGGGAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCGACA
* * * **
11877535 GCACACAGGGGGGACC-GGGCTAGTCCCCGACTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGC
66 GCACGCAGGGGGGACCAGGCCGA-TCCCCGACTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGC
* * *
11877599 CCGCACGCTCATTTCGTGGGTTGACTTAG
130 CCACACGCTCGTTTCATGGGTTGACTTAG
* * ****
11877628 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCCACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCGACA
* * *
11877693 GCACGCAGGGGGGACCATGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGGCTGGCTGAGCGCC
66 GCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCC
* *
11877758 CACACGCTGGTTTCATGGGTTGGCTTAG
131 CACACGCTCGTTTCATGGGTTGACTTAG
*
11877786 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
11877812 TCCCCAGCTA
Statistics
Matches: 399, Mismatches: 87, Indels: 29
0.77 0.17 0.06
Matches are distributed among these distances:
156 5 0.01
157 38 0.10
158 235 0.59
159 116 0.29
160 5 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCGACA
GCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCC
CACACGCTCGTTTCATGGGTTGACTTAG
Found at i:11878839 original size:159 final size:158
Alignment explanation
Indices: 11878484--11878872 Score: 408
Period size: 159 Copynumber: 2.5 Consensus size: 158
11878474 TAAGCATGCA
* * * * *
11878484 GAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCAACAGCTCGCA
1 GAGTTCATTCCAAGTCTAAGATCGGGCCGGACTGAGGGTTGCGGCAGCAGGATCAACAGCACGCA
* * ** * * *
11878549 GGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTTGGCCGACTGAGTGCCCGCACGC
66 GGGGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCAGACTCAGCGCCCGCACGC
* * * *
11878614 CCGTTTCTTGGGTTGGCTTGGGCATAGG
131 CCGTTTCGTGGGTTAGCTTAGGCATACG
* ** ** * * ***
11878642 GAGTTCATTCCATGTCTAAGCCCCAGTCGGA-TCGAGGGTT-CTGGCTGCAGGA-CGGGTAGCAC
1 GAGTTCATTCCAAGTCTAAGATCGGGCCGGACT-GAGGGTTGC-GGCAGCAGGATC-AACAGCAC
*
11878704 GCAGAGGGGGATCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGTCAG-CTCAGCGCCCG
63 GCAG-GGGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGG-CAGACTCAGCGCCCG
* *
11878768 TACGCTCGTTTCGTGGGTTAGCTTAGGCATACG
126 CACGCCCGTTTCGTGGGTTAGCTTAGGCATACG
** *
11878801 GAGTTCATTCCAAGTCTAAGATCGGGCCGGACTGAGGGTTGCGATAGCAGGATCGACAGCACGCA
1 GAGTTCATTCCAAGTCTAAGATCGGGCCGGACTGAGGGTTGCGGCAGCAGGATCAACAGCACGCA
*
11878866 GAGGGGA
66 GGGGGGA
11878873 TCGGGTCAAC
Statistics
Matches: 182, Mismatches: 41, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 51 0.28
159 124 0.68
160 5 0.03
ACGTcount: A:0.19, C:0.28, G:0.33, T:0.21
Consensus pattern (158 bp):
GAGTTCATTCCAAGTCTAAGATCGGGCCGGACTGAGGGTTGCGGCAGCAGGATCAACAGCACGCA
GGGGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGGCAGACTCAGCGCCCGCACGC
CCGTTTCGTGGGTTAGCTTAGGCATACG
Found at i:11878948 original size:26 final size:26
Alignment explanation
Indices: 11878919--11878971 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11878909 GTTGGCTTAG
* **
11878919 GCATATGGACTTCATTCTGTGTCTAA
1 GCATACGGACTTCATTCTCAGTCTAA
*
11878945 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGACTTCATTCTCAGTCTAA
11878971 G
1 G
11878972 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGACTTCATTCTCAGTCTAA
Found at i:11879329 original size:26 final size:26
Alignment explanation
Indices: 11879300--11879352 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11879290 GTTGACTTAG
11879300 GCATAC-AGAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
*
11879326 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
11879352 G
1 G
11879353 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:11879689 original size:158 final size:158
Alignment explanation
Indices: 11879326--11879816 Score: 510
Period size: 158 Copynumber: 3.1 Consensus size: 158
11879316 CCCAGTCTAA
* * * * *
11879326 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAATCTGAGGGTTGCGGTAGTAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-CTGAGGGTTGTGGTAGCAGGATCGACA
* * * * *
11879391 GCACGTAG-GTGGGATCGAGTCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGACTGAGCGC
65 GCAAGTAGAGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCTGACCGGCTGAGCGC
** *
11879455 CCGCGTGCCCGTTTCGTGGGTTGACTTAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * ** * * * * * *
11879484 GAATAGGGAGTTCATT-CCATGTCTATGCCCCAGTCAGACCGATGGTTGTGGCAGCGGGATCGAC
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGACTGAGGGTTGTGGTAGCAGGATCGAC
* * *
11879548 AGCAAGTAGAGGGGGATCGGGTTGAT-CCCGACTTGCGCATTATGCCTCTCTGACCGGCTCAACG
64 AGCAAGTAGAGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCTGACCGGCTGAGCG
* *
11879612 CCTGCACACTCGTTTCGTGGGTTGACTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
11879642 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACTGAGGGTTGTGGTAGCAGGATCGACA
* * * * * * * *
11879707 AC-A-T-GCAGGGGGATCGGGCCGGTCCCCGGCTTACGCATTCTGCCTCT-TCGGCTGGCTGAGC
65 GCAAGTAG-AGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCT-GACCGGCTGAGC
**
11879768 GCCCGCACGCTCGTTTCGTGGGTTGGTTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
11879799 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
11879817 ATATCTTAGC
Statistics
Matches: 268, Mismatches: 57, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
155 1 0.00
156 16 0.06
157 81 0.30
158 149 0.56
159 21 0.08
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACTGAGGGTTGTGGTAGCAGGATCGACAG
CAAGTAGAGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCTGACCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:11881392 original size:26 final size:26
Alignment explanation
Indices: 11881363--11881415 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11881353 CCGGTCTGGT
*
11881363 CTTAGGCTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
* *
11881389 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
11881415 C
1 C
11881416 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:11882546 original size:517 final size:510
Alignment explanation
Indices: 11881536--11882735 Score: 1262
Period size: 517 Copynumber: 2.3 Consensus size: 510
11881526 TGTCGATCCT
* * * * *
11881536 GCTGTCGGTCCAGCTAGCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTGT-GTA
1 GCTGTCAGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACT-TCGTA
* ** * * * * * *
11881600 TGCCAAAGTGAACCCACGAAATGAGCCA-ACGGGCGCTCAGCCAGTCGGAGAGGCT-GAATGCGT
65 TGCCTAAGCCAACCCATGAAATG-GGCATGC-GGTGCTCAGCC-GACTGAGAGG-TAGAATGCGT
* * ** * * * * * *
11881663 AAGCCGGGGATCGACCCGATTTACCCCTACATGCTACCGATCCTGCTGCTAGTCTTGTTGCCGTA
126 AAGCCGGGGATCGGCCCG-GTCCCCCCTACGTGCTATCGATCCTGCTGCTAGTCCTGCTACCGCA
* *
11881728 ACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCCATAGGCTTAGACATGGAATGAACTC
190 ACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACACCATAGGCTTAGACATGGAATGAACTC
* * * *
11881793 CGTATGCCTAACCAACCCACGAAATGAGCATGCAGGCGCTCAACCGACCGGAGAGGTAAAATGCA
255 CGTATGCCTAACCAACCCACAAAATGAGCATGCAGGCACTCAACCGACCGAAGAGGCAAAATGCA
* ** * * *
11881858 CAAGCTGAGGACCAATCCGATCTTCCTTACATGTTGTCGATCCTACTACCACAACCCTTAGTCTG
320 CAAGCCGAGGACCAATCCGATCCCCCCTACATGCTGTCGATCCTACTACCACAACCCTCAGTCTG
* * * * * ** *
11881923 ATCCGATCTTAGATTGGGAATGAACTCTGTTTGCCTAGGTCAACCCATGAAACAGGCGTGCGGGG
385 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAGGCGTGCAAGC
* * * * * * * *
11881988 GCTGAGCCGGCCGGAGAGGCATAATGTGTAAGTCGAGGATCGACCCGATCCC-CATCTGCGT
450 ACTAAGCCAGCCGGAGAGGCATAATGCGCAAGCCCAGGATCGACCCGATCCCTC-TCTGCGA
11882049 GCTG-CTAGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTTCGTA
1 GCTGTC-AGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTTCGTA
* * *
11882113 TGCCTAAGCCAACCCATGAAACGGGCATGCTGGTGCTTAGCCGACCTGAGAGGTAGAATGCATAA
65 TGCCTAAGCCAACCCATGAAATGGGCATGC-GGTGCTCAGCCGA-CTGAGAGGTAGAATGCGTAA
* * * *
11882178 GCCGGGGATCGGTCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGCTGGTCCTGCTATCGCAACC
128 GCCGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCCTGCTGCTAGTCCTGCTACCGCAACC
* * * * * *
11882243 CTCGTTTCGATCCGATCTTAGACTGGGAATGAACACCTTATGCTTAGACATGGAATGAACTCTGT
193 CTCGGTCCAATCCGATCTTAGACTGGGAATGAACACCATAGGCTTAGACATGGAATGAACTCCGT
* * * * * *
11882308 ATGCCTAAGCCAACCTACAAAATGAGCGTGCGTGCAGGCACTCAGCCGGCTGAAGAGGCAGAATG
258 ATGCCTAA-CCAACCCACAAAATGA----GCATGCAGGCACTCAACCGACCGAAGAGGCAAAATG
* * * * *** * * *
11882373 CGCAAGCCGGGGATCGA-CCTGATCCCCCCTGTGTGCTGTCGATCCTGCTACCGCAACCCTCGGT
318 CACAAGCCGAGGACCAATCC-GATCCCCCCTACATGCTGTCGATCCTACTACCACAACCCTCAGT
* ** *
11882437 CTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-TGAGCGTGC
382 CTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAG-GCGTGC
* *
11882501 AAGCACTAAGCCAGCCGGAGAGGCATAATGCGCAAGCCCAGGATCGGCCCGGTCCCTCTCTGCGA
446 AAGCACTAAGCCAGCCGGAGAGGCATAATGCGCAAGCCCAGGATCGACCCGATCCCTCTCTGCGA
* * * * * * *
11882566 GCTGTCGGTGCCACTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTGTCAGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTTCGTAT
* * * * *
11882631 GCCTAAGCTAACCCATGAAATGGGCATGCGGTCGCTCAGCCGATTGAAGAGGCAAAATGCGCAAG
66 GCCTAAGCCAACCCATGAAATGGGCATGCGGT-GCTCAGCCGACTG-AGAGGTAGAATGCGTAAG
* * *
11882696 CCGGGGATCGGCCCGGTCCCTCCTTCGTGCTGTCGATCCT
129 CCGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCCT
11882736 ACTGTCGCAA
Statistics
Matches: 564, Mismatches: 107, Indels: 28
0.81 0.15 0.04
Matches are distributed among these distances:
512 109 0.19
513 127 0.23
516 8 0.01
517 318 0.56
518 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (510 bp):
GCTGTCAGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTTCGTAT
GCCTAAGCCAACCCATGAAATGGGCATGCGGTGCTCAGCCGACTGAGAGGTAGAATGCGTAAGCC
GGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCCTGCTGCTAGTCCTGCTACCGCAACCCTC
GGTCCAATCCGATCTTAGACTGGGAATGAACACCATAGGCTTAGACATGGAATGAACTCCGTATG
CCTAACCAACCCACAAAATGAGCATGCAGGCACTCAACCGACCGAAGAGGCAAAATGCACAAGCC
GAGGACCAATCCGATCCCCCCTACATGCTGTCGATCCTACTACCACAACCCTCAGTCTGATCCGA
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAGGCGTGCAAGCACTAAG
CCAGCCGGAGAGGCATAATGCGCAAGCCCAGGATCGACCCGATCCCTCTCTGCGA
Found at i:11882632 original size:159 final size:155
Alignment explanation
Indices: 11882284--11882790 Score: 509
Period size: 159 Copynumber: 3.2 Consensus size: 155
11882274 AACACCTTAT
* * *
11882284 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCTACAAAATGAGCGTGCGTGCAGGCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGA----GCGTGCAGGCA
* * * * * *
11882348 CTCAGCCGGCTGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGATCCCCCCTGTGTGCTGTC
60 CTCAGCC-GCTGAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCCTGCGTGCTGTC
* * *
11882413 GATCCTGCTACCGCAACCCTCGGTCTGGTTTGA
124 GATCCTACTGCCGCAACCCTCGGTCCGG-TTGA
* * *
11882446 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAAGCACTAAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAGCGTGCAGGCACTCAG
* * * ** * *
11882511 CCAGCCGGAGAGGCATAATGCGCAAGCCCAGGATCGGCCCGGTCCCTCTCTGCGAGCTGTCGGTG
65 CC-GCTGAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCTC-CTGCGTGCTGTCGAT-
* *
11882576 CC-ACTGCCACAACCCTCGGTCCGGTTGGG
127 CCTACTGCCGCAACCCTCGGTCCGGTT-GA
* * * * *
11882605 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCTAACCCATGAAATGGGCATGC-GGTCGCTC
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAATGAGCGTGCAGG-CACTC
* *
11882668 AGCCGATTGAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCCTTCGTGCTGTCGAT
63 AGCCG-CTGAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGAT
* * *
11882733 CCTACTGTCGCAACCCTCAGTCCAGTCTGA
127 CCTACTGCCGCAACCCTCGGTCCGGT-TGA
*
11882763 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
11882791 TTAGGCTGGG
Statistics
Matches: 285, Mismatches: 49, Indels: 26
0.79 0.14 0.07
Matches are distributed among these distances:
157 3 0.01
158 113 0.40
159 123 0.43
160 3 0.01
161 1 0.00
162 42 0.15
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (155 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCAACCCACGAAATGAGCGTGCAGGCACTCAGC
CGCTGAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGATCCTA
CTGCCGCAACCCTCGGTCCGGTTGA
Found at i:11882800 original size:26 final size:26
Alignment explanation
Indices: 11882764--11882816 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11882754 CCAGTCTGAT
11882764 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
11882790 CTTAGGCTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11882816 C
1 C
11882817 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11883008 original size:25 final size:26
Alignment explanation
Indices: 11882980--11883029 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11882970 TCCGATGATT
*
11882980 TTAGAC-TGGAATGAACTCTGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
11883005 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
11883030 ACTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:11883454 original size:158 final size:157
Alignment explanation
Indices: 11883003--11883464 Score: 441
Period size: 158 Copynumber: 2.9 Consensus size: 157
11882993 AACTCTGTAT
* * * *
11883003 GCTTAGACATGGAATGAACTCCGTATGACTAAGCCAACCCATGAAACGAACATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
11883068 TCAGTCGAAGAGGTAGAATGCGTAAACCGAGGATCGATCC-GATCCCCCCTGTGTGCTGTCGATC
66 CCGGTCGAAGAGGCAGAATGCGTAAGCCGGGGATCGA-CCAG-TCCCCCCTGCGTGCTGTCGATC
* *
11883132 CTACTGCCGTAACCCTCTATCCGGTCCAA
129 CTGCTGCCGTAACCCTCTATCCGCTCCAA
* * * * * * *
11883161 TCTTAGA-TTGGGAATGTACTCCATATGCCTAAGTCAAACCATGAAACGAGCGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
** * * * *
11883225 GCCGACCGAAGAGGCATAATGCGTAAGCCAGGGATCGACCAGGTCCCCTCTACGTGCTGTCCG-T
65 GCCGGTCGAAGAGGCAGAATGCGTAAGCCGGGGATCGACCA-GTCCCCCCTGCGTGCTGT-CGAT
* ** ***
11883289 CCCGCTGCCACAACCCTC-AGTCCGACT-GGG
128 CCTGCTGCCGTAACCCTCTA-TCCG-CTCCAA
* * * *
11883319 GCTTAGACATGGAATGAACTTCC-TATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGGGCTTA
1 GCTTAGACATGGAATGAAC-TCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * *
11883383 GCCGGTCGGACAGGCAGACTGCATAAGCCGGGGATCGGCCTAGTCCCCCCTGCGTGCTGTCGATC
65 GCCGGTCGAAGAGGCAGAATGCGTAAGCCGGGGATCGACC-AGTCCCCCCTGCGTGCTGTCGATC
11883448 CTGCTGCCGTAACCCTC
129 CTGCTGCCGTAACCCTC
11883465 GGTTTGGTCA
Statistics
Matches: 239, Mismatches: 55, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
157 6 0.03
158 224 0.94
159 9 0.04
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGAAGAGGCAGAATGCGTAAGCCGGGGATCGACCAGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCGTAACCCTCTATCCGCTCCAA
Found at i:11883514 original size:26 final size:26
Alignment explanation
Indices: 11883478--11883529 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11883468 TTGGTCAAAT
*
11883478 ATTAGATTGGGAATGAACTCCGTATG
1 ATTAGACTGGGAATGAACTCCGTATG
* *
11883504 ATTAGACTGGGGATGAACTTCGTATG
1 ATTAGACTGGGAATGAACTCCGTATG
11883530 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.31
Consensus pattern (26 bp):
ATTAGACTGGGAATGAACTCCGTATG
Found at i:11884065 original size:26 final size:26
Alignment explanation
Indices: 11884024--11884076 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11884014 CCGGTCTGAT
* *
11884024 CTTAGACTTGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11884050 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11884076 C
1 C
11884077 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11884687 original size:159 final size:158
Alignment explanation
Indices: 11884417--11884918 Score: 494
Period size: 159 Copynumber: 3.2 Consensus size: 158
11884407 ACTCCATATG
* * * *
11884417 CTTAAACATGGAATGAACTCTGTATGCCTAAGCCAACCTATGAAATGAACGTGCGGG-AGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCGTGCGGGCA-CTCAG
* * * * * *
11884481 CCGGCCAGAGAGGCAGAATGCGCAAGTCAGGGATCGACCTGGTCCCCCCCTGCGTGCTGTTGATC
65 CCCGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACC-AGTCCCCCCCTGCATGCTGCTGATC
11884546 CTGCTGCCACAACCCTCGGTCTGGTCTGAT
129 CTGCTGCCACAACCCTCGGTCTGGTCTGAT
* * * * * *
11884576 CTTAGACAAGGAATGAACTCCGTATGCATAAGTCAAACTACAAAATGAGCGTGCGGGCACTGAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCGTGCGGGCACTCAGC
* * * * * * *
11884641 CCGCCAAAGAGGCATAATGCGTAACCCGGGGATCGACCCGATCCCCCTCTGCATGCTGCTGGTCC
66 CCGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCAG-TCCCCCCCTGCATGCTGCTGATCC
* * * **
11884706 GGCTGCCACAACCCTTGGTCCGG-CTGGGG
130 TGCTGCCACAACCCTCGGTCTGGTCT-GAT
* * * * * * *
11884735 CTTAGACATGGAATGAACTCCCTAGGCCTAAGCCGACCCACGAAACG-GACGTACGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAG-CGTGCGGGCACTCAG
* * * * * *
11884799 -CCGACCGGAGAGGTAGAATGCGCAAGCTGAGGATCGACCAGT-CCCCCCTACATGCTGCCGATC
65 CCCG-CCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCAGTCCCCCCCTGCATGCTGCTGATC
* * *
11884862 CTGCTGTCGCAACCCTCGGTCTGGTCCGAT
129 CTGCTGCCACAACCCTCGGTCTGGTCTGAT
*
11884892 CCTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
11884919 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 64, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
156 1 0.00
157 59 0.22
158 9 0.03
159 202 0.74
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCGTGCGGGCACTCAGC
CCGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCAGTCCCCCCCTGCATGCTGCTGATCCT
GCTGCCACAACCCTCGGTCTGGTCTGAT
Found at i:11884923 original size:26 final size:26
Alignment explanation
Indices: 11884894--11884944 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
11884884 GGTCCGATCC
11884894 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
11884920 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
11884945 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:11886171 original size:26 final size:26
Alignment explanation
Indices: 11886135--11886187 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11886125 TCGGCTCGAT
* *
11886135 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11886161 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11886187 C
1 C
11886188 CTCAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11886376 original size:197 final size:196
Alignment explanation
Indices: 11886131--11886492 Score: 485
Period size: 197 Copynumber: 1.8 Consensus size: 196
11886121 TCGATCGGCT
* * * * *
11886131 CGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTCAGTCA
1 CGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
11886196 ACCCATGAAATGAAAGTACGGGCGCTTAGCCGATCGGAGAGGGAGAATGCGTAAGCC-AGGGATC
66 ACCCACGAAATGAAAGTACGGGCGCTCAACCGATCGGAGAGGGAGAATGCGCAAGCCGA-AGACC
* * *
11886260 GGCCTGGTCCCCACCTGCGTGCTGTCGATCCTGCTACTGGTCCTACTACCACAACCCTCGATCCA
130 GACCCGGTCCCC-CCTACGTGCTGTCGATCCTGCTACTGGTCCTACTACCACAACCCTCGATCCA
11886325 ATC
194 ATC
* *
11886328 CGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACAT-TGAATGAACTTCGTATGCCTAAGCC
1 CGATCTTAGACTAGGAATGAACTCTGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCC
** * * * *
11886392 AACCCACGAAATGAGCGTGCGGGCGCTCAATCGATCGGAGCGGTAGAATGCGCAAGCCGAAGACC
65 AACCCACGAAATGAAAGTACGGGCGCTCAACCGATCGGAGAGGGAGAATGCGCAAGCCGAAGACC
11886457 GACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTAC
130 GACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTAC
11886493 CTCAATCCTC
Statistics
Matches: 141, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
196 23 0.16
197 116 0.82
198 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.22
Consensus pattern (196 bp):
CGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACCCACGAAATGAAAGTACGGGCGCTCAACCGATCGGAGAGGGAGAATGCGCAAGCCGAAGACCG
ACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTACTGGTCCTACTACCACAACCCTCGATCCAAT
C
Found at i:11886704 original size:159 final size:158
Alignment explanation
Indices: 11886368--11886752 Score: 364
Period size: 159 Copynumber: 2.4 Consensus size: 158
11886358 CTTAGACATT
* * * * ** * * * ** * *
11886368 GAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAATCGATCGGAGC
1 GAATGAACTCCCTATGCCTAAGACAACCCATGAAACAAGCATCCGAGCGCTCAGCCGACCGGAGA
* * * * * *
11886433 GGTAGAATGCGCAAGCCGAAGACCGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTACCTCAA
66 GGCATAATGCGCAAGCCGAAGACCGACCCAGTCCCCCCTACGTGCTGTCAATCCCGCTACCACAA
* *
11886498 TCCTCGGTCTGATTTGATCTTAGACTGG
131 TCCTCGGTCTGATTGGAGCTTAGACTGG
* ** * * *
11886526 GAATGAACTCCGTATGCCTAATTCAACCCATGAAACAAGCATCCGGGCGTTGAGCCGACCGGAGA
1 GAATGAACTCCCTATGCCTAAGACAACCCATGAAACAAGCATCCGAGCGCTCAGCCGACCGGAGA
** * *
11886591 GGCATAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTCTGA-GTGCTGTCAATCCCGCTACCAC
66 GGCATAATGCGCAAGCCGAAGACCGACCCAGTCCCCC-CT-ACGTGCTGTCAATCCCGCTACCAC
*
11886655 AA-CACTCGGTCTGGA-TGGGGCTTAGACAT-G
129 AATC-CTCGGTCT-GATTGGAGCTTAGAC-TGG
* ** * *
11886685 GAGTGAACTCCCTATGCCTAAGACAACCCATGAAACGGGCGTGCGAGCGCTCAGCCGACCGGAGA
1 GAATGAACTCCCTATGCCTAAGACAACCCATGAAACAAGCATCCGAGCGCTCAGCCGACCGGAGA
11886750 GGC
66 GGC
11886753 CAATCAGAGA
Statistics
Matches: 184, Mismatches: 38, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
158 82 0.45
159 98 0.53
160 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
GAATGAACTCCCTATGCCTAAGACAACCCATGAAACAAGCATCCGAGCGCTCAGCCGACCGGAGA
GGCATAATGCGCAAGCCGAAGACCGACCCAGTCCCCCCTACGTGCTGTCAATCCCGCTACCACAA
TCCTCGGTCTGATTGGAGCTTAGACTGG
Found at i:11887066 original size:26 final size:26
Alignment explanation
Indices: 11887028--11887080 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11887018 CTGGTTTGAT
11887028 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11887054 CTTAGAC-GTGGAATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCATATG
11887080 C
1 C
11887081 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11887349 original size:159 final size:159
Alignment explanation
Indices: 11887053--11887556 Score: 434
Period size: 159 Copynumber: 3.2 Consensus size: 159
11887043 AACTCCATAT
*
11887053 GCTTAGACGT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAGGTGCTCA
1 GCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCACGCAGGTGCTCA
* * * * * * * *
11887117 GTCGGTCGAAGACGTAGAATGCGTAAGCCGGGCACCGACCCGGTTCCCTTCTGCGTGCTGTCGAT
65 GCCGATCGAAGACGCAGAATGCGCAAGCCGGGCACCGACCCGATCCCCTTCTACGTGCTGTCCAT
*
11887182 CCAGCTGCCACAACCCTCGG-TCCGATCCGA
130 CCAGCTGCCACAACCCTCGGCTCCGAT-AGA
* * * * * *
11887212 TCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGCGCGGGTGCTGAG
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCACGCAGGTGCTCAG
* * * * * * *
11887277 CCGATCGGAGAGGCATAATGCGCAAGCGGGGGATCGACCTGATCCCCTTCTACGTGCTGTCCATG
66 CCGATCGAAGACGCAGAATGCGCAAGCCGGGCACCGACCCGATCCCCTTCTACGTGCTGTCCAT-
* * * *
11887342 TCA-CTGCCACAACCCTCGGCTCGGCTAGG
130 CCAGCTGCCACAACCCTCGGCTCCGATAGA
* * *** *
11887371 GCTTAGAC-ATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGGGCGTACAGGCGCTCA
1 GCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCACGCAGGTGCTCA
* * * * * *
11887435 GTCGATCGAAGAGGTAGAATGCGCAAGCCTGGG-ATC-AGCCCGGTCCCC-CCTACGTGCTG-CA
65 GCCGATCGAAGACGCAGAATGCGCAAGCC-GGGCACCGA-CCCGATCCCCTTCTACGTGCTGTC-
* * ** *
11887496 GATCCTGCTGCGGCAACCCTCGG-TCC-AGTCTGA
127 CATCCAGCTGCCACAACCCTCGGCTCCGA-T-AGA
* * *
11887529 TCTTAGACTGGGAGTGAACTCCGTATGC
1 GCTTAGACTAGGAATGAACTCCGTATGC
11887557 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 58, Indels: 23
0.77 0.16 0.06
Matches are distributed among these distances:
157 5 0.02
158 53 0.19
159 209 0.76
160 9 0.03
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCACGCAGGTGCTCAG
CCGATCGAAGACGCAGAATGCGCAAGCCGGGCACCGACCCGATCCCCTTCTACGTGCTGTCCATC
CAGCTGCCACAACCCTCGGCTCCGATAGA
Found at i:11887566 original size:26 final size:26
Alignment explanation
Indices: 11887530--11887582 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11887520 CCAGTCTGAT
11887530 CTTAGACT-GGGAGTGAACTCCGTATG
1 CTTAGACTGGGGA-TGAACTCCGTATG
*
11887556 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
11887582 C
1 C
11887583 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:11887756 original size:26 final size:26
Alignment explanation
Indices: 11887727--11887779 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11887717 CCGGTCTGAT
11887727 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
11887753 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
11887779 C
1 C
11887780 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:11888052 original size:158 final size:157
Alignment explanation
Indices: 11887753--11888095 Score: 381
Period size: 158 Copynumber: 2.2 Consensus size: 157
11887743 ACTCCGTATG
* * *
11887753 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *
11887817 TCGGTCGGAGAGGTAGAATGCCTAAGTCGGGGACCGACCTGGTCCCCTCTGCATGCTGCCGATGC
65 CCGGTCGAAGAGGCAGAATGCCTAAGTCGGGGACAGACCCGGTCCCCTCTGCATGCTGCCGATGC
*
11887882 TATTGTCACAACCCTCGGTTTGGTATGAT
130 -ATTGTCACAACCCTCGGTTCGGTATGAT
* * * * *
11887911 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCCCGAAACGAGCGTTCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * *
11887976 CGGTCGAAGAGGCATAATGTGC-AAGTCTGGGATCAG-CCCGGTCCCCTCTGCATGTTGCTGAT-
66 CGGTCGAAGAGGCAGAATG-CCTAAGTCGGGGA-CAGACCCGGTCCCCTCTGCATGCTGCCGATG
* * *
11888038 C-TTGCTACCGCAACCCTCGGTTCGTTCTGAT
129 CATTG-T--CACAACCCTCGGTTCGGTATGAT
*
11888069 CATAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
11888096 TTAGACTGGG
Statistics
Matches: 156, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
155 3 0.02
156 1 0.01
157 2 0.01
158 147 0.94
159 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.23
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CGGTCGAAGAGGCAGAATGCCTAAGTCGGGGACAGACCCGGTCCCCTCTGCATGCTGCCGATGCA
TTGTCACAACCCTCGGTTCGGTATGAT
Found at i:11888110 original size:26 final size:26
Alignment explanation
Indices: 11888071--11888121 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
11888061 GTTCTGATCA
11888071 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
11888097 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
11888122 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:11889461 original size:26 final size:26
Alignment explanation
Indices: 11889425--11889477 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11889415 CCTATGTGAT
*
11889425 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11889451 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11889477 C
1 C
11889478 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11890439 original size:159 final size:159
Alignment explanation
Indices: 11890143--11890488 Score: 407
Period size: 159 Copynumber: 2.2 Consensus size: 159
11890133 AACTCCGTAT
* * *
11890143 GCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACCAGCGTGCGGCCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACCAGCGTGCGGCCGCTCAG
* ** *
11890208 CCGATCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGATCCCCCTCTATGTGCTGTCGGTC
66 CCGATCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCAATCCCCCTCTACATGCTGTCGATC
* *
11890273 CCGCTGCCACAACCCTAGATCTGG-CTGGG
131 CCACTGCCACAACCCTAGATCTGGTCT-GA
* *
11890302 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG-AATCAGGCGTGCGAG-CGCTC
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACCA-GCGTGCG-GCCGCTC
* * * *
11890365 AGCCGGTCGGAGAGGCAGAATGCGCAAGGT-GGGGATCGGCCTAATTCCCCC-CTGCATGCTGTC
64 AGCCGATCGGAGAGGCAGAATGCGCAA-GTCAGGGATCGGCCCAA-TCCCCCTCTACATGCTGTC
* ** * *
11890428 GATCCTACTGCCGTAACCCTCGGTCTGGTCTGA
127 GATCCCACTGCCACAACCCTAGATCTGGTCTGA
*
11890461 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
11890489 TTAGACTAGG
Statistics
Matches: 160, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
158 5 0.03
159 144 0.90
160 11 0.07
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACCAGCGTGCGGCCGCTCAG
CCGATCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCAATCCCCCTCTACATGCTGTCGATC
CCACTGCCACAACCCTAGATCTGGTCTGA
Found at i:11891400 original size:159 final size:156
Alignment explanation
Indices: 11890982--11891501 Score: 438
Period size: 158 Copynumber: 3.3 Consensus size: 156
11890972 GTGGTCCTGT
* ** * *
11890982 TGCCACAACCCTC-AGTCTGGTCTGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGA-TCCGGTCAAAGCTTAGACTGGAATGAACTCCATATGCCTAAGCCAACCC
* * * * * *
11891046 ATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGTAGAATGCGCAAGCTGGGGACCGACTC
65 ATGAAACGAGCGTGCGGGCGCTCAG-CGATCAGAGAGGTAGAATGCGCAAGCCGGGGATCGACCC
* *
11891111 GATCCCCCCTGCGTGCTGTTGATCCTAC
129 GATCCCCCCTGCATGCTGTCGATCCTAC
* * *
11891139 TGCCACAACCCTCGGTCCGGTCAAATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCC
1 TGCCACAACCCTCGATCCGGTCAAAGCTTAGACT-GGAATGAACTCCATATGCCTAAGCCAACCC
* * * * * *
11891204 ATGAAACGAGCGTTCGGGCACTGGGCAG-GTTGA-AGAGGCATAATGCGCAAGCCGGGGATCGAC
65 ATGAAACGAGCGTGCGGGCGCT---CAGCGATCAGAGAGGTAGAATGCGCAAGCCGGGGATCGAC
* *
11891267 CCGATCCCCCTCTGCATGCTGTCGGT-CTCGC
127 CCGATCCCCC-CTGCATGCTGTCGATCCT-AC
* * ** *** *
11891298 TGCCACAATCCTTGATTTGG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 TGCCACAACCCTCGATCCGGTC-AAAGCTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACC
* * * ***
11891362 CATGAAACGGGCGTGCGGGCGCTCAGTCGATCAGAGAGGTAGAATACGCAAGCCAGGGATCGGTT
64 CATGAAACGAGCGTGCGGGCGCTCAG-CGATCAGAGAGGTAGAATGCGCAAGCCGGGGATCGACC
* * ** * *
11891427 CGGTCGCTACTGCGTACTGTCGATCCTAC
128 CGATCCCCCCTGCATGCTGTCGATCCTAC
* * * * ** *
11891456 TGTCGCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTC
1 TGCCACAACCCTCGATCCGGTCAAAGCTTAGACT-GGAATGAACTC
11891502 TGTATGCTTA
Statistics
Matches: 287, Mismatches: 61, Indels: 29
0.76 0.16 0.08
Matches are distributed among these distances:
156 3 0.01
157 30 0.10
158 134 0.47
159 116 0.40
160 1 0.00
161 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (156 bp):
TGCCACAACCCTCGATCCGGTCAAAGCTTAGACTGGAATGAACTCCATATGCCTAAGCCAACCCA
TGAAACGAGCGTGCGGGCGCTCAGCGATCAGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGA
TCCCCCCTGCATGCTGTCGATCCTAC
Found at i:11891511 original size:26 final size:26
Alignment explanation
Indices: 11891482--11891534 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11891472 CTGATCTGAT
11891482 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
11891508 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
11891534 C
1 C
11891535 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:11892029 original size:12 final size:12
Alignment explanation
Indices: 11892012--11892042 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
11892002 TGAGGGATAG
11892012 GGGCCAATATAA
1 GGGCCAATATAA
11892024 GGGCCAATATAA
1 GGGCCAATATAA
11892036 GGGCCAA
1 GGGCCAA
11892043 GTACCAGCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.39, C:0.19, G:0.29, T:0.13
Consensus pattern (12 bp):
GGGCCAATATAA
Found at i:11892253 original size:26 final size:26
Alignment explanation
Indices: 11892215--11892267 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11892205 GGTTCAAACT
11892215 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11892241 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
11892267 C
1 C
11892268 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11892597 original size:26 final size:26
Alignment explanation
Indices: 11892556--11892606 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11892546 CCGATCAGAT
*
11892556 CTTAGACTGGGAATGAACTCTATATA
1 CTTAGACTGGGAATGAACTCCATATA
11892582 CTTAGACTAGGG-ATGAACTCCATAT
1 CTTAGACT-GGGAATGAACTCCATAT
11892607 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATA
Found at i:11893431 original size:159 final size:158
Alignment explanation
Indices: 11892791--11893453 Score: 666
Period size: 159 Copynumber: 4.2 Consensus size: 158
11892781 AACTCCGTAT
* * * *
11892791 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAA
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * **
11892856 CCGATCGGAGAGGCAGAAGGCACTAGCTGGGGACCGACCCAGTCCTATCCTGCGTGCTGTCGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCC-CCCCTGCGTGCTGTCGATC
*
11892921 CTGCTGCCACAACCCTCGGTCCGATTCGA
130 CTGCTGCCACAACCCTCGGTCCGACTCGA
** * * * * * * *
11892950 TTTTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGCCGCTGAG
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * *
11893014 TCGGCCGGAGTGGCATAATGCGCAAGAC-GGGGATCGACCCGGTCCCCCTCTGCGTGCTGTC-AG
66 CCGACCGGAGAGGCAGAATGCGCAAG-CTGGGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGA-
* * * * * *
11893077 TCCTGTTACCATAAACCTCGGTCCGACTGGG
128 TCCTGCTGCCACAACCCTCGGTCCGACTCGA
* * *
11893108 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCACTTAG
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * *
11893173 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCTCTCTCTGCGTGCTGTCGGTC
66 CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTC-CCCCCTGCGTGCTGTCGATC
* * * * * *
11893238 CCGCTGCCACAACCCTAGGTTCGGCTGGG
130 CTGCTGCCACAACCCTCGGTCCGACTCGA
* * * * * * *
11893267 GCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAAGGGCGTACGGACGCTCA
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACG-AAACGAGCGTGCGGGCACTCA
* * * *
11893332 GCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCCTACGTGCTGTCGATC
65 GCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATC
* * **
11893397 CTGCTGCCGCAACCATCGGTCCGGTTCGA
130 CTGCTGCCACAACCCTCGGTCCGACTCGA
* * *
11893426 TCTTAGACTGGGAATGAACTCCATATGC
1 GCTTAGACTTGGAATGAACTCCGTATGC
11893454 TTAGACTGGG
Statistics
Matches: 405, Mismatches: 91, Indels: 16
0.79 0.18 0.03
Matches are distributed among these distances:
157 2 0.00
158 121 0.30
159 226 0.56
160 56 0.14
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTCCGACTCGA
Found at i:11893463 original size:26 final size:26
Alignment explanation
Indices: 11893427--11893479 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11893417 CCGGTTCGAT
11893427 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
11893453 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11893479 C
1 C
11893480 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11893665 original size:26 final size:26
Alignment explanation
Indices: 11893636--11893689 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
11893626 TCGGTCTGAT
11893636 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
11893662 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
11893688 CT
1 CT
11893690 AAAGCCAACC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:11893848 original size:26 final size:26
Alignment explanation
Indices: 11893819--11893876 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
11893809 CCGGTCCGAT
11893819 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGGCTGGGAATGAACTCCGTATG
* *
11893845 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGGCTGGGAATGAACTCCGTATG
*
11893871 CCTAGG
1 CTTAGG
11893877 TCAACCCACA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.22, C:0.21, G:0.31, T:0.26
Consensus pattern (26 bp):
CTTAGGCTGGGAATGAACTCCGTATG
Done.