Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 76 of 402
Found at i:11894579 original size:26 final size:26
Alignment explanation
Indices: 11894541--11894593 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11894531 GGCTCAAAAT
11894541 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11894567 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
11894593 C
1 C
11894594 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11894865 original size:159 final size:158
Alignment explanation
Indices: 11894566--11895034 Score: 537
Period size: 159 Copynumber: 3.0 Consensus size: 158
11894556 AACTCCGTAT
* * * * *
11894566 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * * * * * * *
11894631 CCGACCGGAGAGGTAGAATACGCAAGCTGGGGATTGGCCCAGTCCCCCACAGCGTGCTGTCGGTC
66 TCGACCGGAGAGGAAGAATGCACAAGCCGGGGATCGGCCCGGT-CCCCACAGCGTGCTATCGGTC
* * * *
11894696 CCGCTGCCACAACTCTCTGTCCGGCTGGG
130 CCGCTACCACAACCCTCGGTCCGACTGGG
* * *
11894725 GCTTGGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGGGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * *
11894790 TC-AGTCAGAGAGGAATAATGCACAAGCCGGGGATCGGCCCGGTCCCCATCTA-CGTGCTATCGG
66 TCGA-CCGGAGAGGAAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCA-C-AGCGTGCTATCGG
*
11894853 TCCCGCTACCACAACCCTCGGTTCGACTGGG
128 TCCCGCTACCACAACCCTCGGTCCGACTGGG
* * * *
11894884 GCTTAGACATGGAATGAACTCCCTATGCCTAAACGATCCCACGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * * * * * *
11894949 TCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACTCGGTCCCCCCTGCGTGCTACCGATCC
66 TCGACCGGAGAGGAAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCACAGCGTGCTATCGGTCC
** * *
11895014 TACTGCCGCAACCCTCGGTCC
131 CGCTACCACAACCCTCGGTCC
11895035 AGTCTGATCT
Statistics
Matches: 259, Mismatches: 46, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
158 35 0.14
159 222 0.86
160 2 0.01
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
TCGACCGGAGAGGAAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCACAGCGTGCTATCGGTCC
CGCTACCACAACCCTCGGTCCGACTGGG
Found at i:11895084 original size:26 final size:26
Alignment explanation
Indices: 11895043--11895095 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11895033 CCAGTCTGAT
*
11895043 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11895069 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
11895095 C
1 C
11895096 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11895795 original size:26 final size:24
Alignment explanation
Indices: 11895753--11895831 Score: 77
Period size: 26 Copynumber: 3.0 Consensus size: 24
11895743 GGCTCAAAAT
*
11895753 CTTAGACTGGCAATGAACTACTTATG
1 CTTAGACTGG-ATTGAACT-CTTATG
* *
11895779 CTTAGACGTGGATTGAACTCCGTACG
1 CTTAGAC-TGGATTGAACT-CTTATG
11895805 CTTAGACATGGATTGAACTCTGTATG
1 CTTAGAC-TGGATTGAACTCT-TATG
11895831 C
1 C
11895832 CTAAGCCAAC
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
25 1 0.02
26 40 0.91
27 3 0.07
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (24 bp):
CTTAGACTGGATTGAACTCTTATG
Found at i:11896519 original size:26 final size:26
Alignment explanation
Indices: 11896475--11896527 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11896465 CCGATCCGAT
*
11896475 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACGGGGAATAAACTCCATATG
* * *
11896501 CTTAGACGGGGGATGAACTCCGTATG
1 CTTAGACGGGGAATAAACTCCATATG
11896527 C
1 C
11896528 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACGGGGAATAAACTCCATATG
Found at i:11896713 original size:26 final size:26
Alignment explanation
Indices: 11896684--11896739 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
11896674 TCAGTCTGAT
11896684 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
11896710 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
11896736 CTTA
1 CTTA
11896740 AGCCAACCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:11896970 original size:392 final size:391
Alignment explanation
Indices: 11896228--11896945 Score: 944
Period size: 392 Copynumber: 1.8 Consensus size: 391
11896218 ATCGACCTGG
* * * *
11896228 TCCCCCCTGCGTGATGCAGATCCTACTGCTGGTCCTGTTGCCGCAACCCTCGGTTTGATCCGATC
1 TCCCCCCTGCGTGATGCAGATACTACTGCTGGTCCTGCTGCCGCAACCCTCGATTAGATCCGATC
* *
11896293 TTAGATTGGGAATGAACTCCGTATGCTTAGACATTGAATGAACTCTGTATGCCTAAGCCAACCCA
66 TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCA
** * * * * *
11896358 CGAAACGAGTGTGCGGGCGCTCTACCAATCGAAGAGGTAGAATGCATAAGCCAGGGATCGGCCCG
131 CGAAACGAACGTGCGGGCGCTCTACCAAGCGAAAAGGCAGAATGCACAAGCCAGGGATCGACCCG
* ** * *
11896423 GTCCCCCTTACATGCTGTTGATCCTGCTACCGTAACCTCAGTCCGATCCGATCTTAGACTGGGAA
196 ATCCCCCTTACA-GCTGCAGATCCTGCTACCGTAACCTCAGTCCAATCCGATCTTAGACTAGGAA
* * *
11896488 TAAACTCCATATGCTTAGACGGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT
260 TAAACTCCATATGCTTAGACGGGGGATGAACTCCATATACCTAAGTCAACCCATAAAACGAGCGT
**
11896553 GCGGCTGCTCAACCGACTGGAGAGGCCAACCGGAGAGGCAGAATACGCAAGCCAGGGATCGGCCC
325 GCGGCTGCTCAACCGACCAGAGAGGCCAACCGGAGAGGCAGAATACGCAAGCCAGGGATCGGCCC
11896618 GA
390 GA
* * * * *
11896620 TCCCCCCTGCGTGATGCGGATATTACTGGTGGTCCTGCTGTCGCAACCCTCGATTCAG-TCTGAT
1 TCCCCCCTGCGTGATGCAGATACTACTGCTGGTCCTGCTGCCGCAACCCTCGATT-AGATCCGAT
* *
11896684 CTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGCTTAAGCCAACCC
65 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCC
* * *
11896749 ATGAAATGAACGTGCGGGCGCTC-AGCC-GGCGAGAAAGGCAGAATGCACAAGCCAGGGATCGAC
130 ACGAAACGAACGTGCGGGCGCTCTA-CCAAGCGA-AAAGGCAGAATGCACAAGCCAGGGATCGAC
* * * *
11896812 TCGATCCCCCCTGTGC-GCTGCCAG-TCCTGCTGCTGTAACCCTC-GATCCAATCCGATCTTAGA
193 CCGAT-CCCCCT-TACAGCTG-CAGATCCTGCTACCGTAA-CCTCAG-TCCAATCCGATCTTAGA
* * * *
11896874 CTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATACCTAGGTCAACCCATAAAA
253 CTAGGAATAAACTCCATATGCTTAGACGGGGGATGAACTCCATATACCTAAGTCAACCCATAAAA
11896939 CGAGCGT
318 CGAGCGT
11896946 CGGGCGCTTG
Statistics
Matches: 279, Mismatches: 39, Indels: 15
0.84 0.12 0.05
Matches are distributed among these distances:
391 4 0.01
392 181 0.65
393 92 0.33
394 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (391 bp):
TCCCCCCTGCGTGATGCAGATACTACTGCTGGTCCTGCTGCCGCAACCCTCGATTAGATCCGATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCA
CGAAACGAACGTGCGGGCGCTCTACCAAGCGAAAAGGCAGAATGCACAAGCCAGGGATCGACCCG
ATCCCCCTTACAGCTGCAGATCCTGCTACCGTAACCTCAGTCCAATCCGATCTTAGACTAGGAAT
AAACTCCATATGCTTAGACGGGGGATGAACTCCATATACCTAAGTCAACCCATAAAACGAGCGTG
CGGCTGCTCAACCGACCAGAGAGGCCAACCGGAGAGGCAGAATACGCAAGCCAGGGATCGGCCCG
A
Found at i:11897931 original size:159 final size:158
Alignment explanation
Indices: 11897618--11898080 Score: 479
Period size: 159 Copynumber: 2.9 Consensus size: 158
11897608 TCTGCATGCT
* * * * * *
11897618 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCATGGAACGAGCGTACGGGCGCTCAACCG
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCTGAAACGGGCGTGCGGGCGCTCAGCCG
* * * * * * * * *
11897683 GTCGAAGAGGTAGAATACGCAAGCCGGGGAT-GTCCCGATCCCCCACTACGTGCTGTTGATCCCG
66 GCCGAAGAGG-AAAATGCACAAGTCGGGGATCGACCCGGTCCCCC-CTACGTGCTGTCGATCCTG
* **
11897747 CTGCCACAACTCTC--TATCTGGCTGGGGC
129 CTGCCACAACCCTCAGTATCTAACTGGGGC
* *
11897775 TTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCTCGAAACGGGCGTGGGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCT-GAAACGGGCGTGCGGGCGCTCAGCC
11897840 GGCCGAAGAGGAATAATGCACAAGTCGGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGATCCT
65 GGCCGAAGAGGAA-AATGCACAAGTCGGGGATCGACCCGGTCCCCC-CTACGTGCTGTCGATCCT
11897905 GCTGCCACAACCCTCAGT-TC-AACTGGGGC
128 GCTGCCACAACCCTCAGTATCTAACTGGGGC
* * * * * *
11897934 TTAGATATGGAATGAACTCCCTATGCCTAAACGAACCCATGAAACGGGCGTGCAGGCGCTTAGTC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC-TGAAACGGGCGTGCGGGCGCTCAGCC
* * ** * * * *
11897999 GACCGGAGAGGCAAAATGCACAAGTCAAGTATC-AGCCTGGTCCCCCCTGCTTGCTGTCGATCCT
65 GGCCGAAGAGG-AAAATGCACAAGTCGGGGATCGA-CCCGGTCCCCCCTACGTGCTGTCGATCCT
* **
11898063 GTTGCTGCAACCCTCAGT
128 GCTGCCACAACCCTCAGT
11898081 CTGGATTGAT
Statistics
Matches: 258, Mismatches: 40, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
157 37 0.14
158 77 0.30
159 138 0.53
160 5 0.02
161 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCTGAAACGGGCGTGCGGGCGCTCAGCCG
GCCGAAGAGGAAAATGCACAAGTCGGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCT
GCCACAACCCTCAGTATCTAACTGGGGC
Found at i:11898567 original size:26 final size:26
Alignment explanation
Indices: 11898525--11898577 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11898515 GGCTCAAAAT
11898525 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
11898551 CTTAGAC-ATGGATTGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
11898577 C
1 C
11898578 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11898920 original size:159 final size:158
Alignment explanation
Indices: 11898550--11899051 Score: 397
Period size: 159 Copynumber: 3.2 Consensus size: 158
11898540 AACTCCGTAT
* * * * *
11898550 GCTTAGACATGGATTGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * **
11898615 CCAGCTGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGATCCCCCCTATGTGTTGTCGATCC
66 CCAGCTGAAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCCCCTACGTGTACTCGATCC
** * * *
11898680 TGCTATCACAACCCTCGGTTTGGTCCGA
131 CACTACCACAACCCTCAGTCTGGTCCGA
* * * * * *
11898708 TCTTAGAC-TAGGAATGAACTCCGC-ATGCATAAGTCAACCGACGAAACGAGCGTGCGGGCGTTG
1 GCTTAGACAT-GGAATGAACTCC-CTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * *
11898771 AGCTAGTTGAAGAGGCATAATGCGCAAGTCGAGGATCGGCTCGATCCCCCTCTACGTGCTACT-G
64 AGCCAGCTGAAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCCC-CTACGTG-TACTCG
* * ** *
11898835 GTCCCACTGCCACAACCCTCAGTCTGGTTGGG
127 ATCCCACTACCACAACCCTCAGTCTGGTCCGA
* ** * *
11898867 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTATTAAACGGGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** * * ** * * *
11898932 CC-GATCGGAGAGGCAAAATGCGTAAGCCGAGGATTGGCTAGGT-CCCCCTGCATGCTA-TCGAT
66 CCAGCT-GAAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCCCCTACGTG-TACTCGAT
* * * * *
11898994 CCTACTGCCGCAACCCTCAGTCCGATCCGA
129 CCCACTACCACAACCCTCAGTCTGGTCCGA
* *
11899024 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCCTATGC
11899052 TTAGATTGGG
Statistics
Matches: 273, Mismatches: 62, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
156 2 0.01
157 58 0.21
158 99 0.36
159 111 0.41
160 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGCTGAAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCCCCTACGTGTACTCGATCC
CACTACCACAACCCTCAGTCTGGTCCGA
Found at i:11899054 original size:26 final size:26
Alignment explanation
Indices: 11899025--11899077 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11899015 CCGATCCGAT
11899025 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
11899051 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11899077 C
1 C
11899078 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11899135 original size:13 final size:13
Alignment explanation
Indices: 11899117--11899141 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11899107 GAACTCAACC
11899117 GGTCGGAGAGGCT
1 GGTCGGAGAGGCT
11899130 GGTCGGAGAGGC
1 GGTCGGAGAGGC
11899142 ATAATGAGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.56, T:0.12
Consensus pattern (13 bp):
GGTCGGAGAGGCT
Found at i:11899895 original size:26 final size:26
Alignment explanation
Indices: 11899859--11899911 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11899849 CTAGTCTGAT
*
11899859 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACACCATATG
* *
11899885 CTTAGACTGGGGATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCATATG
11899911 C
1 C
11899912 CTATCTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:11900532 original size:11 final size:11
Alignment explanation
Indices: 11900491--11900534 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
11900481 CGGTTAGGCT
*
11900491 CTCCGGCGATG
1 CTCCGACGATG
*
11900502 CTCCGACAATG
1 CTCCGACGATG
11900513 CTCCGACGATG
1 CTCCGACGATG
*
11900524 CTCCAACGATG
1 CTCCGACGATG
11900535 GTGCCCCGGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.20, C:0.36, G:0.25, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:11900643 original size:26 final size:25
Alignment explanation
Indices: 11900604--11900655 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
11900594 GGCTCAAACT
11900604 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
*
11900629 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
11900655 C
1 C
11900656 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:11901237 original size:343 final size:341
Alignment explanation
Indices: 11900603--11901361 Score: 811
Period size: 342 Copynumber: 2.2 Consensus size: 341
11900593 TGGCTCAAAC
*
11900603 TCTTAGACTGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAACC
1 TCTTAGACTGGAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAACC
*** * *
11900668 ACAAAACGAGCGAGCAGGCGCTGAACCGATCGGAGAGGCAGAATGCACAAGCTGGGGATTGGTCC
66 ACAAAACGAGCGAGCAGGCGCTGAACCGATCGGAGAGGCAGAATGCACAAGCCAAGGATCGGCCC
** * * *
11900733 AGTCCCTTTCTATGTGCTACCGATCTCGCTGCCACAACCTCGGTCCAGCTGGGGCTTACACATGG
131 AGTCCCCCTCTATGTGCTACCGATCCCACTACCACAACCTCGGTCCAGCTGGGGCTTACACATGG
* * * *
11900798 AATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCATGCTGGCACTCAACCGATCGGAGAG
196 AATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGCGGGCACTCAACCGACCGAAGAG
* * * * * *
11900863 GCAGAATGCACAAGTCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATTCTGCGACCACAAC
261 GCAGAATGCACAAGCCAGGGACCGGCCCGGTCCCCCCTACATGCTATCGATCCTGCGACCACAAC
11900928 CCTCGGTCTGATCCAA
326 CCTCGGTCTGATCCAA
* * * ** *
11900944 TCTTAGATTGGGAATGAACTCCATATGGTTAGAC-TGGGGATGAACTCTGTATGCCTAAGTTAAC
1 TCTTAGACT-GGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAAA
* * ** * ** * * *
11901008 CCACGAAATGAGCGTTC-GAGCGTTGAGTCGGTCGGAGAGGCATAATGCGCAAGCCAAGGATCGG
64 CCACAAAACGAGCGAGCAG-GCGCTGAACCGATCGGAGAGGCAGAATGCACAAGCCAAGGATCGG
* * ** * * *
11901072 CCCTGTCCCCCTCTGTGTGCTGTCGATCCCACTACCACAACCCTCGGTTCGGCTGGGGCTTAGAC
128 CCCAGTCCCCCTCTATGTGCTACCGATCCCACTACCACAA-CCTCGGTCCAGCTGGGGCTTACAC
* ** * ** *
11901137 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAGTCGGCCGA
192 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGCGGGCACTCAACCGACCGA
* *
11901202 AGAGGCAGAATGCGCAAGCCAGGGACCGGCCCGGTCCCCCCTGCATGCTATCGATCCTGCTTCTA
257 AGAGGCAGAATGCACAAGCCAGGGACCGGCCCGGTCCCCCCTACATGCTATCGA---T-C--CT-
* * * * **
11901267 GTCCCGCTACCGCAACCCTCAGTCCGGTCTGA
315 G---CG--ACCACAACCCTCGGTCTGATCCAA
*
11901299 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
1 TCTTAGACT-GGAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
11901362 CCAATGAAAT
Statistics
Matches: 336, Mismatches: 65, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
341 10 0.03
342 124 0.37
343 122 0.36
346 1 0.00
349 2 0.01
350 1 0.00
353 2 0.01
355 73 0.22
356 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (341 bp):
TCTTAGACTGGAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAACC
ACAAAACGAGCGAGCAGGCGCTGAACCGATCGGAGAGGCAGAATGCACAAGCCAAGGATCGGCCC
AGTCCCCCTCTATGTGCTACCGATCCCACTACCACAACCTCGGTCCAGCTGGGGCTTACACATGG
AATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGCGGGCACTCAACCGACCGAAGAG
GCAGAATGCACAAGCCAGGGACCGGCCCGGTCCCCCCTACATGCTATCGATCCTGCGACCACAAC
CCTCGGTCTGATCCAA
Found at i:11901329 original size:26 final size:26
Alignment explanation
Indices: 11901300--11901352 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11901290 CCGGTCTGAT
11901300 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
11901326 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
11901352 C
1 C
11901353 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:11901565 original size:210 final size:209
Alignment explanation
Indices: 11901202--11901613 Score: 581
Period size: 210 Copynumber: 2.0 Consensus size: 209
11901192 AGTCGGCCGA
* * *
11901202 AGAGGCAGAATGCGCAAGCCAGGGACCGGCCCGGTCCCCCCTGCATGCTATCGATCCTGCTTCTA
1 AGAGGCAGAATGCACAAGCCAGGGACCGGCCCGGTCCCCCCTGCACGCTATCGATCCTGCTACTA
*
11901267 GTCCCGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
66 GTCCCGCTACCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * *
11901332 CATGGAATGAACTCTGTATGCCTAAGCCAACCAATGAAATGAGCGTGTGGGTGCTCAGCCGGTCG
131 CATGGAATGAACTCTGCATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGTCG
11901397 GAGAGGCCGATCGG
196 GAGAGGCCGATCGG
* * ** ** *
11901411 AGAGGCAGAATGCATAAGCCAGGGATCGGCCTTGTCCCCCCCTGTGCGCTGTCGATCCTGCTACT
1 AGAGGCAGAATGCACAAGCCAGGGACCGGCCCGGT-CCCCCCTGCACGCTATCGATCCTGCTACT
* * * * * *
11901476 GGTCCTGCTACCGTAACCCTCGGTCCGATTTGATCTTAGACTGGGAATGAACTCTGTATGCTTAG
65 AGTCCCGCTACCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * *
11901541 ATATGGAATGAACTCTGCATGCCTAAGGCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGTC
130 ACATGGAATGAACTCTGCATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGTC
11901606 GGAGAGGC
195 GGAGAGGC
11901614 AGAATGCAGA
Statistics
Matches: 176, Mismatches: 26, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
209 30 0.17
210 146 0.83
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.21
Consensus pattern (209 bp):
AGAGGCAGAATGCACAAGCCAGGGACCGGCCCGGTCCCCCCTGCACGCTATCGATCCTGCTACTA
GTCCCGCTACCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
CATGGAATGAACTCTGCATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGTCG
GAGAGGCCGATCGG
Found at i:11902036 original size:156 final size:158
Alignment explanation
Indices: 11901656--11902036 Score: 360
Period size: 159 Copynumber: 2.4 Consensus size: 158
11901646 CCCATACATT
* * * * *
11901656 CTGCCGATCCTGCTGTCGCAGCCCTCGGTCCATTCTGATCTTAAACTGGGAATGAACTCCGTATG
1 CTGCCGATCCTGTTGTCGCAACCCTCGGTCCA-TCTAATCTTAGACTAGGAATGAACTCCGTATG
* * * * *
11901721 CCTAAGTCAAACCACGAAACAAGCGTACGGGCACTGAGCCAACCGGAGAGGCATAATGCGCAAGC
65 CCTAAGCCAAACCACGAAACAAGCATACGGGCACTCAGCCAACCGGAGAGGCAAAATGCGAAAGC
* * *
11901786 CAGGGATCGGCCTGGTCCCCCTCTGTGTG
130 CAGGAATCGGCCTGATCCCCCTCTGCGTG
* * * * * * ** *
11901815 CTGCCGGTCCCGTTGCCACAACCATCGGTCCAGCTAGGGCTTAGAC-ATGGAATTAACTCTC-TA
1 CTGCCGATCCTGTTGTCGCAACCCTCGGTCCATCTA-ATCTTAGACTA-GGAATGAACTC-CGTA
* * * ** * * * * *
11901878 TGCCTCAGCCAACCCATGAAACGGGCATGCGGGCGCTCAGCCGATCGGAGAGGCAAAATGTGAAA
63 TGCCTAAGCCAAACCACGAAACAAGCATACGGGCACTCAGCCAACCGGAGAGGCAAAATGCGAAA
11901943 GCC-GAGAATCGG-CTGAT-CCCC-CTGCGTG
128 GCCAG-GAATCGGCCTGATCCCCCTCTGCGTG
* *
11901971 CTGCCGATCCTATTGTCGTAACCCTCGGTCCGATCTAATCTTAGACTAGGAATGAACTCCGTATG
1 CTGCCGATCCTGTTGTCGCAACCCTCGGTCC-ATCTAATCTTAGACTAGGAATGAACTCCGTATG
11902036 C
65 C
11902037 TTAGATTGCG
Statistics
Matches: 172, Mismatches: 43, Indels: 17
0.74 0.19 0.07
Matches are distributed among these distances:
155 1 0.01
156 52 0.30
157 9 0.05
158 7 0.04
159 102 0.59
160 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CTGCCGATCCTGTTGTCGCAACCCTCGGTCCATCTAATCTTAGACTAGGAATGAACTCCGTATGC
CTAAGCCAAACCACGAAACAAGCATACGGGCACTCAGCCAACCGGAGAGGCAAAATGCGAAAGCC
AGGAATCGGCCTGATCCCCCTCTGCGTG
Found at i:11902039 original size:26 final size:26
Alignment explanation
Indices: 11902010--11902062 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11902000 CCGATCTAAT
11902010 CTTAGACTAG-GAATGAACTCCGTATG
1 CTTAGA-TAGCGAATGAACTCCGTATG
* *
11902036 CTTAGATTGCGGATGAACTCCGTATG
1 CTTAGATAGCGAATGAACTCCGTATG
11902062 C
1 C
11902063 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGATAGCGAATGAACTCCGTATG
Found at i:11902235 original size:26 final size:26
Alignment explanation
Indices: 11902206--11902258 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11902196 CCGGTCTGAT
*
11902206 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
11902232 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
11902258 C
1 C
11902259 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:11902354 original size:196 final size:196
Alignment explanation
Indices: 11901984--11902365 Score: 527
Period size: 196 Copynumber: 1.9 Consensus size: 196
11901974 CCGATCCTAT
* * * *
11901984 TGTCGTAACCCTCGGTCCGATCTAATCTTAGACTAGGAATGAACTCCGTATGCTTAGATTGCGGA
1 TGTCGCAACCCTCGGTCCGATCTAATCTTAGACGAGGAATGAACTCCGTATGCTTAGAATGCGAA
* *
11902049 TGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGAGCGCTCAGTCGGCCGGAGAGGC
66 TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGTCGGCCGGAGAGGC
* * *
11902114 AGAATGCGCAAGCCGAGAATCGACCCGATCCCCCCTGTGTGCTGTCGATCCTGCTGCTGGTCCTG
131 AGAATGCGCAAGCAGAGAACCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTG
11902179 C
196 C
* * * *
11902180 TGTCGCAACCCTTGGTCCGGTCTGATCTTAGACGGGGAATGAACTCCGTATGCTTAGACATG-GA
1 TGTCGCAACCCTCGGTCCGATCTAATCTTAGACGAGGAATGAACTCCGTATGCTTAGA-ATGCGA
* * *
11902244 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG-CTGCCGGAGAGG
65 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGTCGGCCGGAGAGG
* * * * *
11902308 CAGAATGTGCAAGTCAG-GGACCGGCCTGGTCCTCCCCTGCGTGCTGTCGATCCTGCTG
130 CAGAATGCGCAAG-CAGAGAACCGACCCGATCC-CCCCTGCGTGCTGTCGATCCTGCTG
11902366 GCGCAACCCT
Statistics
Matches: 162, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
195 33 0.20
196 127 0.78
197 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (196 bp):
TGTCGCAACCCTCGGTCCGATCTAATCTTAGACGAGGAATGAACTCCGTATGCTTAGAATGCGAA
TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGTCGGCCGGAGAGGC
AGAATGCGCAAGCAGAGAACCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTG
C
Found at i:11902622 original size:159 final size:158
Alignment explanation
Indices: 11902231--11902733 Score: 491
Period size: 159 Copynumber: 3.2 Consensus size: 158
11902221 AACTCCGTAT
11902231 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * * *
11902296 CTG-CCGGAGAGGCAGAATGTGCAAGTCAGGGACCGGCCTGGTCCTCCCCTGCGTGCTGTCGATC
66 CCGACCGGAGAGGCAGAATGTGCAAGCCGGGGAACGGCCCGATCC-CCCCTGCGTGCTGTCGATC
* * *
11902360 CTGCTGGCGCAACCCTCGATCCGATCTGA
130 CCGCTGCCACAACCCTCGATCCGATCTGA
* *** ** ** * * * *
11902389 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAATGAACCCACAAAATAAGCGTTCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCA
* * * * * *
11902453 GCCGATCGGAGAGGCATAATGTGCAAGCCGGGGATCGGCCCGATCCCACTCTGCGTGCTGTTGGT
65 GCCGACCGGAGAGGCAGAATGTGCAAGCCGGGGAACGGCCCGATCCC-CCCTGCGTGCTGTCGAT
* *
11902518 CCCGTTGCCACAACCCTCTG-TCCGAT-TGGG
129 CCCGCTGCCACAACCCTC-GATCCGATCT-GA
* * *
11902548 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* *
11902613 CCGACCGGAGAGGCAGAATGCT-TAAGCCGGGGAACGGCCCAATCCCCCCTGCGTGCTG-CTGAT
66 CCGACCGGAGAGGCAGAATG-TGCAAGCCGGGGAACGGCCCGATCCCCCCTGCGTGCTGTC-GAT
* * ** * *
11902676 CCTGCTGTCGTAACCCTC-AGTCCAATCCGA
129 CCCGCTGCCACAACCCTCGA-TCCGATCTGA
* *
11902706 TCTTAGAC-TGGGAATGAACTACGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
11902734 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 62, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 110 0.41
159 156 0.58
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
CCGACCGGAGAGGCAGAATGTGCAAGCCGGGGAACGGCCCGATCCCCCCTGCGTGCTGTCGATCC
CGCTGCCACAACCCTCGATCCGATCTGA
Found at i:11902624 original size:695 final size:699
Alignment explanation
Indices: 11900972--11902784 Score: 2056
Period size: 695 Copynumber: 2.6 Consensus size: 699
11900962 CTCCATATGG
* * * * * *
11900972 TTAGACTGGGGATGAACTCTGTATGCCTAAGTTAACCCACGAAATGAGCGTTCGAGCGTTGAGTC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTTCG-GCGCTGAGCC
* * *
11901037 GGTCGGAGAGGCATAATGCGCAAGCCAAGGATCGGCCCTGTCCCCCTCTGTGTGCTGTCGATCCC
65 GATCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCC-GTCCCCCTCTGTGTGCTGTCGGTCCC
** * * *
11901102 ACTACCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
129 GTTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * * * * *
11901167 CCACGAAACGGGTGTGCGGGCGCTCAGTCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGACCGGC
194 CCATGAAACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGTGAAAGCC-GAGAACGGC
* * ** * *
11901232 CCGGTCCCCCCTGCATGCTATCGATCCTGCTTCTAGTCCCGCTACCGCAACCCTCAGTCCGGTCT
258 CCGATCCCCCCTGCGTGCTGCCGATCCT--AT-T-GT--CG-T-----AACCCTCAGTCCGATCT
* * *
11901297 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
311 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-ATGGGATGAACTCCGTATGCCTAAGTCAA
* * * * *
11901362 CCAATGAAATGAGCGTGTGGGTGCTCAGCCGGTCGGAGAGGCCGATCGGAGAGGCAGAATGCATA
375 CCCATGAAATGAGCGTGCGAGCGCTCA--C-GTC---G-GGCC-A-CGGAGAGGCAGAATGCACA
* * * *
11901427 AGCCAGGGATCGGCCTTGTCCCCCCCTGTGCGCTGTCGATCCTGCTACTGGTCCTGCTACCGTAA
431 AGCCAGGAATCGACCTCGTCCCCCCCTGTGCGCTGTCGATCCTGCTACTGGTCCTGCTACCGCAA
* * * * *
11901492 CCCTCGGTCCGATTTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATATGGAATGAACTCT
496 CCCTCGGTCCGATCTGATCTTAGACGGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCC
* * *
11901557 GCATGCCTAAGGCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGTCGGAGAGGCAGAATGCA
561 GCATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCA
* * * * * * *
11901622 GAAGTCGGGGATCAGCCCGTTTGCCCCATACATTCTGCCGATCCTGCTGTCGCAGCCCTCGGTCC
626 GAAGTCAGGGACCAGCCCGTCTGCCCCATACATGCTGCCGATCCTGCTGGCGCAACCCTCGATCC
11901687 ATTCTGATC
691 ATTCTGATC
* * * * *
11901696 TTAAACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACAAGCGTACGGGCACTGAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTTC-GGCGCTGAGCC
* * * *
11901761 AACCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCTCTGTGTGCTGCCGGTCCC
65 GATCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCC-CGTCCCCCTCTGTGTGCTGTCGGTCCC
* * * * *
11901826 GTTGCCACAACCATCGGTCC-AGCTAGGGCTTAGACATGGAATTAACTCTCTATGCCTCAGCCAA
129 GTTGCCACAACCCTCGGTCCGA-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * *
11901890 CCCATGAAACGGGCATGCGGGCGCTCAGCCGATCGGAGAGGCAAAATGTGAAAGCCGAGAATCGG
193 CCCATGAAACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGTGAAAGCCGAGAA-CGG
* * *
11901955 -CTGAT-CCCCCTGCGTGCTGCCGATCCTATTGTCGTAACCCTCGGTCCGATCTAATCTTAGACT
257 CCCGATCCCCCCTGCGTGCTGCCGATCCTATTGTCGTAACCCTCAGTCCGATCTGATCTTAGACT
* *
11902018 AGGAATGAACTCCGTATGCTTAGATTGCGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATG
322 GGGAATGAACTCCGTATGCTTAGAATG-GGATGAACTCCGTATGCCTAAGTCAACCCATGAAATG
*
11902083 AGCGTGCGAGCGCTCA-GTC-GG-C-CGGAGAGGCAGAATGCGCAAGCC-GAGAATCGACC-CGA
386 AGCGTGCGAGCGCTCACGTCGGGCCACGGAGAGGCAGAATGCACAAGCCAG-GAATCGACCTCG-
* * ** * *
11902142 T-CCCCCCTGTGTGCTGTCGATCCTGCTGCTGGTCCTGCTGTCGCAACCCTTGGTCCGGTCTGAT
449 TCCCCCCCTGTGCGCTGTCGATCCTGCTACTGGTCCTGCTACCGCAACCCTCGGTCCGATCTGAT
*
11902206 CTTAGACGGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
514 CTTAGACGGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCC
* * * * *
11902271 ATGAAACGAGCGTGCGGGTGCTCAG-CTGCCGGAGAGGCAGAATG-TGCAAGTCAGGGACCGGCC
579 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCAG-AAGTCAGGGACCAGCC
* * * *
11902334 TGGTCCT-CCCC-TGCGTGCTGTCGATCCTGCTGGCGCAACCCTCGATCCGA-TCTGATC
643 -CGT-CTGCCCCATACATGCTGCCGATCCTGCTGGCGCAACCCTCGATCC-ATTCTGATC
* * * *
11902391 TTAGACTAGGAATGAACTCCGTATGCCTAAATGAACCCACAAAATAAGCGTTCAGGCGCTGAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTTC-GGCGCTGAGCC
* * * * *
11902456 GATCGGAGAGGCATAATGTGCAAGCCGGGGATCGGCCCGATCCCACTCTGCGTGCTGTTGGTCCC
65 GATCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCG-TCCCCCTCTGTGTGCTGTCGGTCCC
* *
11902521 GTTGCCACAACCCTCTGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
129 GTTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * *
11902586 CCATGAAACGGGCGTGCGGGTGCTCAACCGACCGGAGAGGCAGAATGCT-TAAGCCGGGGAACGG
194 CCATGAAACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATG-TGAAAGCC-GAGAACGG
* * ** * *
11902650 CCCAATCCCCCCTGCGTGCTGCTGATCCTGCTGTCGTAACCCTCAGTCCAATCCGATCTTAGACT
257 CCCGATCCCCCCTGCGTGCTGCCGATCCTATTGTCGTAACCCTCAGTCCGATCTGATCTTAGACT
* * * * *
11902715 GGGAATGAACTACGTATGCTTAGACTGGGGATGAACTCCGCATGCCTAAGTCAACCCACGAAACG
322 GGGAATGAACTCCGTATGCTTAGAAT-GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATG
11902780 AGCGT
386 AGCGT
11902785 ACGGATGCTC
Statistics
Matches: 928, Mismatches: 143, Indels: 63
0.82 0.13 0.06
Matches are distributed among these distances:
694 2 0.00
695 282 0.30
696 154 0.17
697 143 0.15
698 1 0.00
700 1 0.00
701 2 0.00
706 3 0.00
709 2 0.00
710 94 0.10
715 1 0.00
716 2 0.00
718 2 0.00
719 1 0.00
720 1 0.00
722 19 0.02
723 6 0.01
724 211 0.23
725 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (699 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTTCGGCGCTGAGCCG
ATCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGTCCCCCTCTGTGTGCTGTCGGTCCCGT
TGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
ATGAAACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGTGAAAGCCGAGAACGGCCCG
ATCCCCCCTGCGTGCTGCCGATCCTATTGTCGTAACCCTCAGTCCGATCTGATCTTAGACTGGGA
ATGAACTCCGTATGCTTAGAATGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGT
GCGAGCGCTCACGTCGGGCCACGGAGAGGCAGAATGCACAAGCCAGGAATCGACCTCGTCCCCCC
CTGTGCGCTGTCGATCCTGCTACTGGTCCTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGAC
GGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAAC
GAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCAGAAGTCAGGGACCAGCCCGTCTGCC
CCATACATGCTGCCGATCCTGCTGGCGCAACCCTCGATCCATTCTGATC
Found at i:11902759 original size:26 final size:26
Alignment explanation
Indices: 11902707--11902759 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11902697 CCAATCCGAT
*
11902707 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGCATG
* *
11902733 CTTAGACTGGGGATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTACGCATG
11902759 C
1 C
11902760 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGCATG
Found at i:11904225 original size:159 final size:156
Alignment explanation
Indices: 11903774--11904235 Score: 425
Period size: 159 Copynumber: 2.9 Consensus size: 156
11903764 GGTCCTACTA
** * *
11903774 CCACAACCCTCGGTTTGGCTGGGGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTC-GTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * ** * *
11903839 GAAA-TGAGCATGCGGGTGCTCAACTGATCGGAGAGGCAGAATGGAAAGTCGGGGATCGGCTCGG
65 GAAACAG-GCGTGCGGGCACTCAGCTGATCGGAGAGGCAGAATGGAAAGCCGGGGATCGGCTCGG
* *
11903903 TCCCCCCTGCGTGCTTTCGATACTACTG
129 TCCCCCCTGCGTGCTGTCGATACCACTG
* * * * * ** * *
11903931 TCGCAACACTCGATCC-AGTTCGATCTTAGAC-TGAGAATGAACTCCGTATGTCTAAGTCAACCC
1 CCACAACCCTCG-TCCGA-CTGGGGCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCC
* * * * * * *
11903994 ATGAAACAAGCGTTCGGGCACTGAGC-CAGCCGGAGAGGCATAATGCAAAAGCCGGGGATCGGCT
63 ATGAAACAGGCGTGCGGGCACTCAGCTGA-TCGGAGAGGCAGAATG-GAAAGCCGGGGATCGGCT
* * *
11904058 CGATCCCCCTCTGCGTGCTGTC-AGTCCCGCTG
126 CGGTCCCCC-CTGCGTGCTGTCGA-TACCACTG
* *
11904090 CCACAACCCTCTGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTC-GTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * *
11904155 GAAACAGGCGTGCGGGCACTCAGCTGATC-GAGAGGCAGAATGTGTAAGCCGAGGATC-GATCCG
65 GAAACAGGCGTGCGGGCACTCAGCTGATCGGAGAGGCAGAATG-GAAAGCCGGGGATCGGCT-CG
*
11904218 GTCCCCCCCTACGTGCTG
128 GT-CCCCCCTGCGTGCTG
11904236 CCAATCCTAC
Statistics
Matches: 236, Mismatches: 55, Indels: 27
0.74 0.17 0.08
Matches are distributed among these distances:
156 4 0.02
157 77 0.33
158 60 0.25
159 90 0.38
160 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (156 bp):
CCACAACCCTCGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATG
AAACAGGCGTGCGGGCACTCAGCTGATCGGAGAGGCAGAATGGAAAGCCGGGGATCGGCTCGGTC
CCCCCTGCGTGCTGTCGATACCACTG
Found at i:11904276 original size:158 final size:156
Alignment explanation
Indices: 11903798--11904298 Score: 481
Period size: 158 Copynumber: 3.2 Consensus size: 156
11903788 TTGGCTGGGG
* * * ** *
11903798 CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAA-TGAGCATGCGGGTGCTCAA
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAG-GCGTGCGGGCACTCAG
* * * *
11903862 CTGATCGGAGAGGCAGAATGGAAAGTCGGGGATCGGCTCGGT-CCCCCCTGCGTGCTTTCGATAC
64 CTGATCGGAGAGGCAGAATGGAAAGCCGGGGATCGGCTCGGTCCCCCCCTGCGTGCTGTCAATCC
* * * *
11903926 TACTGTCGCAACACTCGATCCAGTTCGAT
129 TACTGCCGCAACCCTCGGTCC-GTCCGAT
* * * * *
11903955 CTTAGACTGAGAATGAACTCCGTATGTCTAAGTCAACCCATGAAACAAGCGTTCGGGCACTGAGC
1 CTTAGACTG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCACTCAGC
* * * * * * *
11904020 -CAGCCGGAGAGGCATAATGCAAAAGCCGGGGATCGGCTCGATCCCCCTCTGCGTGCTGTCAGTC
65 TGA-TCGGAGAGGCAGAATG-GAAAGCCGGGGATCGGCTCGGTCCCCCCCTGCGTGCTGTCAATC
** * * * * **
11904084 CCGCTGCCACAACCCTCTGTCCGACTGGGG
128 CTACTGCCGCAACCCTCGGTCCGTC-CGAT
* *
11904114 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCACTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCACTCAGC
* * * * *
11904179 TGATC-GAGAGGCAGAATGTGTAAGCCGAGGATC-GATCCGGTCCCCCCCTACGTGCTGCCAATC
65 TGATCGGAGAGGCAGAATG-GAAAGCCGGGGATCGGCT-CGGTCCCCCCCTGCGTGCTGTCAATC
*
11904242 CTACTACCGCAACCCTCGGTCCGGTCCGAT
128 CTACTGCCGCAACCCTCGGTCC-GTCCGAT
11904272 CTTAGACTAGGAATGAACTCCGTATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
11904299 TTACACTAGG
Statistics
Matches: 269, Mismatches: 64, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
156 3 0.01
157 67 0.25
158 106 0.39
159 90 0.33
160 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCACTCAGCT
GATCGGAGAGGCAGAATGGAAAGCCGGGGATCGGCTCGGTCCCCCCCTGCGTGCTGTCAATCCTA
CTGCCGCAACCCTCGGTCCGTCCGAT
Found at i:11904301 original size:26 final size:26
Alignment explanation
Indices: 11904272--11904324 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11904262 CCGGTCCGAT
*
11904272 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
*
11904298 CTTACACTAGGGATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
11904324 C
1 C
11904325 CTCAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:11904724 original size:672 final size:677
Alignment explanation
Indices: 11903440--11905024 Score: 1816
Period size: 672 Copynumber: 2.4 Consensus size: 677
11903430 AACTCCGTAT
* * * ** * *
11903440 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGTGCCCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAA
* * * ** * * * *
11903505 CCGGCCGGAGAGGTAGAATGCGCAATTCAAGGATCGACTC-GAT--CCCCT---T-CTG-C-GTG
66 CCGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCAG-TCCCCCCTACGTGCTGCCAATC
* * * * *
11903561 CT--G-CCGCAACCTTTGGTCCGGTATGATCTTAGGCTAGGAATGAACTCCATATGCTTAGACTG
130 CTACGACCGCAACCCTCGGTCCGGTACGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTA
* * * * *
11903623 GGGATGAACTCTGCATGCCTAAGTCAACTCACAAAACGAGCGTACGGGCGCTCAGTCGGCTGGAG
195 GGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAGTC-GC----G
* * * *
11903688 AGGCAAGTCAGAGAGGCATAATGCACAATCCGAGGATCAGCCCGGTTCCCCTCTGCGTGCTACCG
255 AGGC-AG-CAGAGAGGCATAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTCTACATGCTACCG
*** *
11903753 ATCCCGCTACCGGTCCTACTACCACAACCCTCGGTTTGGCTGGGGCTTAGACATGGAATAAACTC
318 ATCCCGCTACCGGTCCTACTACCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATAAACTC
* * * * *
11903818 CGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGTGCTCAACTGATCGGAGAGGCAGAATGG
383 CGTATGCCCAAGCCAACCAACGAAACGAGCATGCGGGTGCTCAACCGATCGGAGAGGCAGAATGG
* * * * * * *
11903883 AAAGTCGGGGATCGGCTCGGTCCCCCCTGCGTGCTTTCGATACTACTGTCGCAACACTCGATCCA
448 AAAGTCAGGGACCGACCCGGTCCCCCCAGCGTGCTGTCGATACTACTATCGCAACACTCGATCCA
* * * *
11903948 GTTCGATCTTAGACTGAGAATGAACTCCGTATGTCTAAGTCAACCCATGAAACAAGCGTTCGGGC
513 GTTCGACCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTTCAGAC
* * * * * *
11904013 ACTGAGCCAGCCGGAGAGGCATAATGCAAAAGCCGGGGATCGGCTCGATCCCCCTCTGCGTGCTG
578 ACTGAACCAGCCGAAGAGGCATAATGCAAAAGCCGGGGATCAGCCCAATCCCCCTCTGCGTGCTA
* *
11904078 TCAGTCCCGCTGCCACAACCCTCTGTCCGACTGGG
643 CCAGTCCCGCTGCCACAACCCTCGGTCCGACTGGG
*
11904113 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTACGGGCACTCA
* * * * * *
11904177 GCTGATC-GAGAGGCAGAATGTGTAAGCCGAGGATCGATCCGGTCCCCCCCTACGTGCTGCCAAT
65 ACCGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCAGT-CCCCCCTACGTGCTGCCAAT
* * * *
11904241 CCTACTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTACACT
129 CCTACGACCGCAACCCTCGGTCCGGTACGATCTTAGACTAGGAATGAACTCCATATGCTTAGACT
* *
11904306 AGGGATGAACTCCGTATGCCTCAGTCAACCCACAAAACGAGCGTGCGGGCACTCAG-C-C-AGTC
194 AGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAGTCGCGAGGC
** * * **
11904368 -G-A-AGAGGCATAATGTGCAAGCCGGGGATC-GACCCGGTCCCCCTCTACATGTTGTCGATCCC
259 AGCAGAGAGGCATAATGCACAAGCCGAGGATCAG-CCCGGTCCCCCTCTACATGCTACCGATCCC
** * * * *
11904429 GCTGTCGGTCCTGCTACCATAACCCTTGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCGTAT
323 GCTACCGGTCCTACTACCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATAAACTCCGTAT
* * * *
11904494 GCCCAAGCCAACCAACGAAACGAGCGTGTGGGTGCTCAGCCGA-CTGGAGAGGCAGAATGCGTAA
388 GCCCAAGCCAACCAACGAAACGAGCATGCGGGTGCTCAACCGATC-GGAGAGGCAGAATG-GAAA
* * * ***
11904558 GTCAGGGACCGACCCGGTCCCCCCAGCGTGCTGTCGATCCTGCTATCGCAACACTCGGTTTGGTT
451 GTCAGGGACCGACCCGGTCCCCCCAGCGTGCTGTCGATACTACTATCGCAACACTCGATCCAGTT
* * *
11904623 CGACCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCAGACGCT
516 CGACCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTTCAGACACT
* * * *
11904688 GAACC-GATCGAAGAGGCATAATGCACAAGCCGGGGATCAGCCCAATCTCCCTTTGCGTGCTACC
581 GAACCAG-CCGAAGAGGCATAATGCAAAAGCCGGGGATCAGCCCAATCCCCCTCTGCGTGCTACC
11904752 AGTCCCGCTGCCACAACCCTCGGTCCGACTGGG
645 AGTCCCGCTGCCACAACCCTCGGTCCGACTGGG
* * * *
11904785 GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACCCACGTAACGAGCGTACGGGCCCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAA
* * * *
11904850 CCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGCTAATCC
66 CCGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCAGTCCCCCCTACGTGCTGCCAATCC
* * * *
11904915 TGCGATCGCAACCCTCGGT-CGAGTTCAATC-TAGACTAGGAATGAACTCCATATGCTTAGACTA
131 TACGACCGCAACCCTCGGTCCG-GTACGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTA
* ** *
11904978 GGGATCAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGG
195 GGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGG
11905025 ATGCTCAGCC
Statistics
Matches: 769, Mismatches: 122, Indels: 44
0.82 0.13 0.05
Matches are distributed among these distances:
670 2 0.00
671 227 0.30
672 326 0.42
673 95 0.12
674 1 0.00
675 5 0.01
676 3 0.00
678 1 0.00
679 3 0.00
680 1 0.00
681 4 0.01
683 1 0.00
684 100 0.13
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (677 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAA
CCGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCAGTCCCCCCTACGTGCTGCCAATCC
TACGACCGCAACCCTCGGTCCGGTACGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAG
GGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAGTCGCGAGGCAG
CAGAGAGGCATAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTCTACATGCTACCGATCCCGCT
ACCGGTCCTACTACCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATAAACTCCGTATGCC
CAAGCCAACCAACGAAACGAGCATGCGGGTGCTCAACCGATCGGAGAGGCAGAATGGAAAGTCAG
GGACCGACCCGGTCCCCCCAGCGTGCTGTCGATACTACTATCGCAACACTCGATCCAGTTCGACC
TTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTTCAGACACTGAACC
AGCCGAAGAGGCATAATGCAAAAGCCGGGGATCAGCCCAATCCCCCTCTGCGTGCTACCAGTCCC
GCTGCCACAACCCTCGGTCCGACTGGG
Found at i:11904987 original size:26 final size:26
Alignment explanation
Indices: 11904945--11904995 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
11904935 GAGTTCAATC
*
11904945 TAGACTAGGAATGAACTCCATATGCT
1 TAGACTAGGAATCAACTCCATATGCT
* *
11904971 TAGACTAGGGATCAACTCCGTATGC
1 TAGACTAGGAATCAACTCCATATGC
11904996 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATCAACTCCATATGCT
Found at i:11905892 original size:26 final size:26
Alignment explanation
Indices: 11905852--11905903 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11905842 CGATTTGATG
*
11905852 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
11905878 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
11905904 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:11906326 original size:158 final size:158
Alignment explanation
Indices: 11905877--11906548 Score: 547
Period size: 158 Copynumber: 4.2 Consensus size: 158
11905867 ACTCTGTATG
* * ** *
11905877 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAGC
* ** * * *
11905942 CGGTC-AGAGAGGCATG-ATGCGCAAGCTAGGGATCAACTCGATCCCCCTCTGTGTGCTGCCGAT
66 CGGCCGAGAGAGGCA-GAATGCGCAAG-TAGGGATCGGCCCGGTCCCCC-C--TGCG-TG-C--T
* * ** * **
11906005 CCCGTTGCCGGTCCTACTGCCACAACCCTC-AGTCCGGCCGGGG
122 ---GTT---GATCCTGCTGCCACAACCCTCGA-TCCGATCTGAT
* * * *
11906048 CTAAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAG
* * * *
11906112 CCGGCC-AGAGAGGCAGAATGCGCAAGTCGAGGATCGACCTGGTCCCCCCTGCGTGCTATTGATC
65 CCGGCCGAGAGAGGCAGAATGCGCAAGTAG-GGATCGGCCCGGTCCCCCCTGCGTGCTGTTGATC
* *
11906176 CTGTTGCCATAACCCTC-AGTCCGATCTGAT
129 CTGCTGCCACAACCCTCGA-TCCGATCTGAT
* * * * * *
11906206 CTTAGACTGGGAATGAACTCCGTATGCATAA-CTCAATCCATGAAATGAGCATACGGGTGTTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGC-CAACCCATGAAATGAGCATGCGGGCGCTCAG
* * * *
11906270 CCGACCGAG-GAGGCATAATGCGCAAGTAGGGATCGGCCCGGTCCCCCTCTGTGTGCTGTGGATC
65 CCGGCCGAGAGAGGCAGAATGCGCAAGTAGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTTGATC
* * **
11906334 CCGCTGCCACAACCCTCGATCTGA-CTGGGG
129 CTGCTGCCACAACCCTCGATCCGATCT-GAT
* *
11906364 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAG
* * * ** * *
11906428 CCGGCCG-GAAAGGTAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGCTGATC
65 CCGGCCGAGAGAGGCAGAATGCGCAAG-TAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTTGATC
* * * *
11906492 CTACTACCGCAACCCTCGATCCGATTTGAT
129 CTGCTGCCACAACCCTCGATCCGATCTGAT
*
11906522 CTTAGATTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
11906549 TTAGACTGGG
Statistics
Matches: 407, Mismatches: 79, Indels: 43
0.77 0.15 0.08
Matches are distributed among these distances:
157 22 0.05
158 257 0.63
159 24 0.06
161 2 0.00
164 1 0.00
166 1 0.00
167 2 0.00
168 3 0.01
170 4 0.01
171 90 0.22
172 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAGC
CGGCCGAGAGAGGCAGAATGCGCAAGTAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTTGATCCT
GCTGCCACAACCCTCGATCCGATCTGAT
Found at i:11906551 original size:26 final size:26
Alignment explanation
Indices: 11906522--11906574 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11906512 CCGATTTGAT
* *
11906522 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11906548 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11906574 C
1 C
11906575 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11912859 original size:25 final size:27
Alignment explanation
Indices: 11912807--11912859 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
11912797 CCGATCCGAT
11912807 CTTAGACTAGGAATGGAACTTCGTATG
1 CTTAGACTAGGAATGGAACTTCGTATG
* *
11912834 CTTAGACTGGGGAT-GAAC-TCGTATG
1 CTTAGACTAGGAATGGAACTTCGTATG
11912859 C
1 C
11912860 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 8 0.33
26 4 0.17
27 12 0.50
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
CTTAGACTAGGAATGGAACTTCGTATG
Found at i:11913088 original size:159 final size:159
Alignment explanation
Indices: 11912833--11913601 Score: 764
Period size: 159 Copynumber: 4.9 Consensus size: 159
11912823 AACTTCGTAT
* * * *
11912833 GCTTAGAC-TGGGGATGAACT-CGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * ** * ** * *
11912896 GCCGACCGAAGAGGCATAATGCGTAAATCGGGGATCAGCCCAATCCCCCTCTACGTGCTGTCGAT
65 GCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGAT
* *
11912961 CCCGTTGCCACAACCCTCGGTCCGACTGGG
130 CCCGCTACCACAACCCTCGGTCCGACTGGG
* * *
11912991 GCTTAGACATGGAATGAATTTCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * **** * * * **
11913056 TCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCAATTCGAT-TCCCACTGCGTGCTGTTGAT-
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATC
* ** * *
11913119 CCGATTACTGCAACCCTTGGTCCGATCT-GA
131 CCG-CTACCACAACCCTCGGTCCGA-CTGGG
* * * * * *
11913149 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGTGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * * * *
11913213 GCCAGCCGAAGAGGCATAATGCGCAAACCAGGGATCGGCTCGGTCCCCCTTTGCGTGCTACCGAT
65 GCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGAT
**
11913278 CCCGCTACCACAACCCTCGGTTTGACTGGG
130 CCCGCTACCACAACCCTCGGTCCGACTGGG
* * * * *
11913308 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCATCCCACGAAACGAGCATGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * *
11913373 CCGGTCGGAA-AGGTAGAATGTGCAAGCCGGGGATCGGCCCGGT-CCCC-CTGCGTGTTGCCGAT
66 CCGG-CCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGAT
* * * * *
11913435 CCCGCTGCCACAACCCTCGATCTGGCTGAG
130 CCCGCTACCACAACCCTCGGTCCGACTGGG
* *
11913465 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * *
11913530 TCAGCCGAAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTTTGCGTGCTACCGATC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATC
*
11913595 CTGCTAC
131 CCGCTAC
11913602 TGGTCCTATT
Statistics
Matches: 496, Mismatches: 102, Indels: 25
0.80 0.16 0.04
Matches are distributed among these distances:
156 4 0.01
157 132 0.27
158 146 0.29
159 206 0.42
160 8 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATC
CCGCTACCACAACCCTCGGTCCGACTGGG
Found at i:11913407 original size:317 final size:316
Alignment explanation
Indices: 11912833--11913601 Score: 909
Period size: 317 Copynumber: 2.4 Consensus size: 316
11912823 AACTTCGTAT
* *
11912833 GCTTAGACTGGGGATGAACT-CGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAG
* * * ** * * **
11912897 CC-GACCGAAGAGGCATAATGCGTAAATCGGGGATCAGCCCAATCCCCCTCTACGTGCTGTCGAT
66 CCAG-CCGAAGAGGCATAATGCGCAAACCGGGGATCGGCCCGGTCCCCCTTTGCGTGCTACCGAT
* * * *
11912961 CCCGTTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAATTTCGTATGCCTAAGCC
130 CCCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
* * * * * * *
11913026 AACCTACGAAACGAGCGTGCGGGTGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATC
195 AACCCACGAAACGAGCATGCGAGCGCTCAGCCGGCCGGAAAGGCAGAATGCGCAAGCCGGGGATC
** * ** * ** * * *
11913091 AATTCGATTCCCACTGCGTGCTGTTGAT-CCGATTACTGCAACCCTTGGTCCGATCTGA-
260 AACCCG-GTCCCACTGCGTGCTGCCGATCCCG-CTACCACAACCCTCGATCCG-GCTGAG
* * * *
11913149 TCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGTGTTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAG
* *
11913214 CCAGCCGAAGAGGCATAATGCGCAAACCAGGGATCGGCTCGGTCCCCCTTTGCGTGCTACCGATC
66 CCAGCCGAAGAGGCATAATGCGCAAACCGGGGATCGGCCCGGTCCCCCTTTGCGTGCTACCGATC
** *
11913279 CCGCTACCACAACCCTCGGTTTGACTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCA
131 CCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
11913344 TCCCACGAAACGAGCATGCGAGCGCTCAGCCGGTCGGAAAGGTAGAATGTGCAAGCCGGGGATCG
196 ACCCACGAAACGAGCATGCGAGCGCTCAGCCGGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCA
* * * * *
11913409 GCCCGGTCCCCCTGCGTGTTGCCGATCCCGCTGCCACAACCCTCGATCTGGCTGAG
261 ACCCGGTCCCACTGCGTGCTGCCGATCCCGCTACCACAACCCTCGATCCGGCTGAG
* * * *
11913465 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGA
* * * *
11913529 GTCAGCCGAAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTTTGCGTGCTACCGAT
65 GCCAGCCGAAGAGGCATAATGCGCAAACCGGGGATCGGCCCGGTCCCCCTTTGCGTGCTACCGAT
*
11913594 CCTGCTAC
130 CCCGCTAC
11913602 TGGTCCTATT
Statistics
Matches: 381, Mismatches: 67, Indels: 10
0.83 0.15 0.02
Matches are distributed among these distances:
315 4 0.01
316 167 0.44
317 209 0.55
318 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (316 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAG
CCAGCCGAAGAGGCATAATGCGCAAACCGGGGATCGGCCCGGTCCCCCTTTGCGTGCTACCGATC
CCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
ACCCACGAAACGAGCATGCGAGCGCTCAGCCGGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCA
ACCCGGTCCCACTGCGTGCTGCCGATCCCGCTACCACAACCCTCGATCCGGCTGAG
Found at i:11913666 original size:26 final size:26
Alignment explanation
Indices: 11913637--11913689 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11913627 CCAGTCCGAT
11913637 CTTAGAC-TGGAAATGAACTCCGTATG
1 CTTAGACATGG-AATGAACTCCGTATG
*
11913663 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
11913689 C
1 C
11913690 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:11914163 original size:158 final size:155
Alignment explanation
Indices: 11913663--11914163 Score: 499
Period size: 159 Copynumber: 3.2 Consensus size: 155
11913653 ACTCCGTATG
* * *
11913663 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GAGCGTGCAGGCGCTCAG-
* * * ** * *
11913728 CAG-CGAAGAGGTAGAATGCACAAGTTGGGGATCGACCTGATCCCCCCTACGTGCTGTTGATCTT
64 CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACC-GATCCCCCCTGCGTGCTGCTGATCTT
* *
11913792 GCTACCACAACCCTCGGTCTGGTCTGAT
128 GCTACCACAACCCTCGGTCCGGTCCGAT
* * * * *
11913820 CTTAGAC-TGAGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGCAGGC-ATGAG
1 CTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GAGCGTGCAGGCGCTCAG
* * * * *
11913883 CTGGCCGAAGAGGCATAATGCGTAAGCCAGGGGATCAACCCGATCCCCCTCTGTGTGCTGCTGGT
64 C-GGCCGAAGAGGCAGAATGCGCAAGCC-GGGGATCGA-CCGATCCCCC-CTGCGTGCTGCTGAT
* * **
11913948 CTTGCTACCACAACCCTCGGTTCGG-CTGGGG
125 CTTGCTACCACAACCCTCGGTCCGGTC-CGAT
* *
11913979 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGAGGCGTGTAGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGA-GCGTGCAGGCGCTCAG-
* * * * *
11914044 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCACGGTCCCCCCTGCGTGCTACTGATCCT
64 CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGAC-CGATCCCCCCTGCGTGCTGCTGATCTT
** ** *
11914109 GCTGTCGTAACCCTCGATCCGGTCCGAT
128 GCTACCACAACCCTCGGTCCGGTCCGAT
11914137 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
11914164 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 52, Indels: 27
0.78 0.15 0.08
Matches are distributed among these distances:
155 1 0.00
156 6 0.02
157 67 0.24
158 74 0.27
159 101 0.36
160 28 0.10
161 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGAGCGTGCAGGCGCTCAGCG
GCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCGATCCCCCCTGCGTGCTGCTGATCTTGCT
ACCACAACCCTCGGTCCGGTCCGAT
Found at i:11914166 original size:26 final size:26
Alignment explanation
Indices: 11914137--11914189 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11914127 CCGGTCCGAT
11914137 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11914163 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11914189 C
1 C
11914190 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11914881 original size:158 final size:157
Alignment explanation
Indices: 11914552--11914888 Score: 457
Period size: 158 Copynumber: 2.1 Consensus size: 157
11914542 GCTTAGAGAT
* *
11914552 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGACCAGAG
1 GGAATGAACTCCGTATGCTTAAGCCAACCCACAAAATGAGCGTGCAGGCGCTCAGCCGACCAGAG
* *
11914617 AGGCAGAATGCGTAAGTCCGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCTGCA
66 AGGCAGAATACGCAAGTCCGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCTGCA
* *
11914682 ACCCTCAGTCCGATCGATCTTAGACTG
131 ACCCTCAGTCCGATCGATCCTAGACTA
* * *
11914709 GGAATGAACTTCCGTATGCTTAAGTCAACCCACAAAATGAGCGTGCAGGCGCTGAGCCGACCGGA
1 GGAATGAAC-TCCGTATGCTTAAGCCAACCCACAAAATGAGCGTGCAGGCGCTCAGCCGACCAGA
* * **
11914774 GAGGCATAATACGCAAG-CCAGGGATCGGTCTTG-TCCCCCCTGCGTGCTGTCGATCCTGCTG-T
65 GAGGCAGAATACGCAAGTCC-GGGATCAG-CCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCT
*
11914836 CGCAACCCTC-GATCCGGTCTGATCCTAGACTA
128 -GCAACCCTCAG-TCCGATC-GATCCTAGACTA
*
11914868 GGAATGAACTCCGTATTCTTA
1 GGAATGAACTCCGTATGCTTA
11914889 GACTAGGGAT
Statistics
Matches: 159, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
157 13 0.08
158 125 0.79
159 21 0.13
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCTTAAGCCAACCCACAAAATGAGCGTGCAGGCGCTCAGCCGACCAGAG
AGGCAGAATACGCAAGTCCGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCTGCA
ACCCTCAGTCCGATCGATCCTAGACTA
Found at i:11916018 original size:158 final size:157
Alignment explanation
Indices: 11915582--11916074 Score: 474
Period size: 158 Copynumber: 3.1 Consensus size: 157
11915572 GGCTCAAAAT
** *
11915582 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCCCAAC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAAC
* * ** * * *
11915647 CGATCGGAGAGGCAGAACGCGCAAGCCGGGGAT-TGACCTGGTCCCCCTGTGTGTTGTCGATCCT
66 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCTGGTCCCCCTACGTGCTGCCGATCCC
*
11915711 ACTACCACAACCCTCGGTCTGGTCTGAT
130 ACTACCACAACCCTCGGTCTGGTCTGAG
* * * * * * * *
11915739 CTTAGACTGGGAATGAACTTCGTAT-CCTAAGTCAACCCATGAAATGAGCGTGCAGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAAC
* * * * * *
11915803 CGATCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCTGGTCCCCCTCTCCATGCTGCCGGTCC
66 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCTGGT-CCCC-CTACGTGCTGCCGATCC
* * *
11915868 CGCTGCCACAACCCTCGGTCTGG-CTGGGG
129 CACTACCACAACCCTCGGTCTGGTCT-GAG
* * *
11915897 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAAGCCATGAAAC-AGGCGTTCGGGTGCTCA
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGA-GCGTGCGGGTGCTCA
* * * * * * *
11915960 ACCGATCGGAGAGGTAGAATTCGCAAGTCGGGGATCAGCCCGATCCTCCCAACGTGCTGTCGATC
64 ACCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCTGGTCC-CCCTACGTGCTGCCGATC
* ** * * * * *
11916025 CTACTGTCGCAACTCTCAGTCTAGTCTGAT
128 CCACTACCACAACCCTCGGTCTGGTCTGAG
11916055 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
11916075 TGTATGCTTA
Statistics
Matches: 268, Mismatches: 58, Indels: 19
0.78 0.17 0.06
Matches are distributed among these distances:
156 66 0.25
157 31 0.12
158 103 0.38
159 68 0.25
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAAC
CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCTGGTCCCCCTACGTGCTGCCGATCCCA
CTACCACAACCCTCGGTCTGGTCTGAG
Found at i:11916084 original size:26 final size:26
Alignment explanation
Indices: 11916055--11916107 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11916045 CTAGTCTGAT
* *
11916055 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11916081 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11916107 C
1 C
11916108 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11917158 original size:159 final size:159
Alignment explanation
Indices: 11916803--11917762 Score: 653
Period size: 159 Copynumber: 6.0 Consensus size: 159
11916793 AACTCCGTAT
* * * * * * *
11916803 GCTTAGGCATGGAATGAACTCCGTAAGCCTAAGCCAACCCGCGGAATGAGGGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * ** * * * * * *
11916868 CCGGCCAGAGAGGTAGAATGCGCAAGCCGAAGATTGGCCCGAT-CCCC-CTGCATACTATCGATC
66 CCGACCAGAGAGGCATAATGCGCAAGGCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATC
* * *
11916931 CTGCTGTCGCAACCCTCGGTCCGGTCT-GA
131 CTGCTGCCACAACCCTCGATCCGG-CTGGA
* * * *** * * *
11916960 TCTTACAC-TGGGAATGAACTCCGTATGCATAAATTAACCCACGGAACGAGAGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
11917024 GCCGA-CTGAAGAGGCATAATACGCAAGGCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGG
65 GCCGACCAG-AGAGGCATAATGCGCAAGGCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGA
* *
11917088 TCATGCTGCCACAACCCTCGATCCGGCTGGG
129 TCCTGCTGCCACAACCCTCGATCCGGCTGGA
* * * *
11917119 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCGCGAAACGGGCGTGCGGGCTCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
11917184 CCGACCAGAGAGGCAGAATACGGAA-GCTGGGGATC-AGCCCGGTACCCC-CTGCGTGCTATCGA
66 CCGACCAGAGAGGCATAATGCGCAAGGC-GGGGATCGA-CCCGGTCCCCCTCTGCGTGCTGTCGA
* * * * * *
11917246 TCTTGCTGTCGCAACCCTCGGTCCAG-TCCGA
129 TCCTGCTGCCACAACCCTCGATCCGGCT-GGA
* * * * * *
11917277 TCATCGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCAGGG-GCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGGCGCTCA
* * * *** *
11917340 ACCGACCGGAAAGGCATAATGCGCAAGTTAGGGATC-AGCCAGGTCCCCCTCTGCGTGCTGCTGA
65 GCCGACCAGAGAGGCATAATGCGCAAGGCGGGGATCGA-CCCGGTCCCCCTCTGC--G-TGC---
*
11917404 TCCCGCTACCGATCCTGCTGCCACAACCCTCGATCCGGCTGGG
123 T---G-T--CGATCCTGCTGCCACAACCCTCGATCCGGCTGGA
* * * *
11917447 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** ** * * * * *
11917512 TTGGTCAGAGAGGCAAAATGTGCAA-GCTGGGGATCGGCCCGGTCCCCCCCTTCGTGCTGTCGAT
66 CCGACCAGAGAGGCATAATGCGCAAGGC-GGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGAT
* ** * *
11917576 CCTGCTACCGTAACCCTC-AGTACAGTCT-GA
130 CCTGCTGCCACAACCCTCGA-T-CCGGCTGGA
* * * * * * * *
11917606 TCTTAGA-TTGGGAATGAACTCTGTATGCATAGGTCAACCCACGAAATGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
11917670 GCCGACC-GAAGAGGCATAATGTGTAAGCCGAGGATCGACCCAGTCCCCCTCTGCGTGCTG-CTA
65 GCCGACCAG-AGAGGCATAATGCGCAAGGCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGA
* *
11917733 GT-CTCGCTGCCACAACCCTCGGTCCCGCTG
129 -TCCT-GCTGCCACAACCCTCGATCCGGCTG
11917763 CCACAACCCT
Statistics
Matches: 614, Mismatches: 150, Indels: 76
0.73 0.18 0.09
Matches are distributed among these distances:
156 3 0.00
157 161 0.26
158 65 0.11
159 248 0.40
160 9 0.01
161 4 0.01
162 1 0.00
164 1 0.00
165 1 0.00
168 4 0.01
169 1 0.00
170 33 0.05
171 83 0.14
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCAGAGAGGCATAATGCGCAAGGCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATC
CTGCTGCCACAACCCTCGATCCGGCTGGA
Found at i:11917783 original size:21 final size:21
Alignment explanation
Indices: 11917737--11917776 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
11917727 CTGCTAGTCT
11917737 CGCTGCCACAACCCTCGGTCC
1 CGCTGCCACAACCCTCGGTCC
11917758 CGCTGCCACAACCCTCGGT
1 CGCTGCCACAACCCTCGGT
11917777 TCGGCTGGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.15, C:0.50, G:0.20, T:0.15
Consensus pattern (21 bp):
CGCTGCCACAACCCTCGGTCC
Found at i:11917897 original size:339 final size:328
Alignment explanation
Indices: 11916803--11917916 Score: 951
Period size: 316 Copynumber: 3.4 Consensus size: 328
11916793 AACTCCGTAT
* * * * * * * *
11916803 GCTTAGGCATGGAATGAACTCCGTAAGCCTAAGCCAACCCGCGGAATGAGG-GTGTGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GGCGTGCGGGCACTCA
** * * ** * ** ** * * * *
11916867 GCCGGCCAGAGAGGTAGAATGCGCAAGCCGAAGATTGGCCCGAT-CCCCCTGCATACTATCGATC
65 GTAGGCCAGAGAGGCAAAATAAGCAAGCTGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATC
** * * * * * * * *
11916931 CTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCATAAATTA
130 CTGCTACCGCAACCCTCAGTACAGTCCGATCATAGACT-GGAATGAACTCCGTATGCATAAGTCA
* * * * * * *
11916996 ACCCACGGAACGAGAGTGC-GGGCGCTGAGCCGA-CTGAAGAGGCATAATACGCAAGGCG-GGGA
194 ACCCACGAAACAAGCGTGCAGGG-GCTCAACCGACCGGAA-AGGCATAATGCGCAA-GCGAGGGA
**
11917058 TCGACCC-GGTCCCCCTCTGC--G-TGCTG-T--CG-----G-TCATGCTGCCACAACCCTCGAT
256 TC-ACCCAGGTCCCCCTCTGCGTGCTGCTGATCCCGCAACCGATCCCGCTGCCACAACCCTCGAT
11917110 CCGGCTGGG
320 CCGGCTGGG
* *
11917119 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCGCGAAACGGGCGTGCGGGCTCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
** * * * * * * *
11917184 CCGACCAGAGAGGCAGAATACGGAAGCTGGGGATCAGCCCGGTACCCCCTGCGTGCTATCGATCT
66 TAGGCCAGAGAGGCAAAATAAGCAAGCTGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
** * * * *
11917249 TGCTGTCGCAACCCTCGGTCCAGTCCGATCATCGACTGGAATGAACTCCGTATGCCTAAGTCAAC
131 TGCTACCGCAACCCTCAGTACAGTCCGATCATAGACTGGAATGAACTCCGTATGCATAAGTCAAC
* ** *
11917314 CCATGAAACAAGCGTGCAGGGGCTCAACCGACCGGAAAGGCATAATGCGCAAGTTAGGGATCAGC
196 CCACGAAACAAGCGTGCAGGGGCTCAACCGACCGGAAAGGCATAATGCGCAAGCGAGGGATCACC
* *
11917379 CAGGTCCCCCTCTGCGTGCTGCTGATCCCGCTACCGATCCTGCTGCCACAACCCTCGATCCGGCT
261 CAGGTCCCCCTCTGCGTGCTGCTGATCCCGCAACCGATCCCGCTGCCACAACCCTCGATCCGGCT
11917444 GGG
326 GGG
* ** *
11917447 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
* * ** * *
11917512 TTGGTCAGAGAGGCAAAATGTGCAAGCTGGGGATCGGCCCGGTCCCCCCCTTCGTGCTGTCGATC
66 TAGGCCAGAGAGGCAAAATAAGCAAGCTGGGGATCAGCCCGGT-CCCCCCTGCGTGCTGTCGATC
* * * * * *
11917577 CTGCTACCGTAACCCTCAGTACAGTCTGATCTTAGATTGGGAATGAACTCTGTATGCATAGGTCA
130 CTGCTACCGCAACCCTCAGTACAGTCCGATCATAGACT-GGAATGAACTCCGTATGCATAAGTCA
** * * * *
11917642 ACCCACGAAATGAGCGTGC-GGGCGCTGAGCCGACC-GAAGAGGCATAATGTGTAAGCCGA-GGA
194 ACCCACGAAACAAGCGTGCAGGG-GCTCAACCGACCGGAA-AGGCATAATGCGCAAG-CGAGGGA
*
11917704 TCGACCCA-GTCCCCCTCTGCGTGCTGCT-AGTCTCGCTGCCACAACCCTCGGTCCCGCTGCCAC
256 TC-ACCCAGGTCCCCCTCTGCGTGCTGCTGA-TC-C-C-G---CAA--C-CGATCCCGCTGCCAC
* *
11917767 AACCCTCGGTTCGGCTGGG
310 AACCCTCGATCCGGCTGGG
* * * *
11917786 GATTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
** * * ** * *
11917851 TAGGCCAGAGAGATAAAACAAGCAAGCCGGGGATCAATCCGGTCCCCTCTGCATGCTGTCGATCC
66 TAGGCCAGAGAGGCAAAATAAGCAAGCTGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
11917916 T
131 T
11917917 ACTGTCACAA
Statistics
Matches: 656, Mismatches: 108, Indels: 46
0.81 0.13 0.06
Matches are distributed among these distances:
315 6 0.01
316 167 0.25
317 57 0.09
318 1 0.00
319 5 0.01
320 1 0.00
322 2 0.00
327 1 0.00
328 123 0.19
329 53 0.08
330 90 0.14
331 6 0.01
332 1 0.00
333 1 0.00
336 2 0.00
338 21 0.03
339 119 0.18
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (328 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
TAGGCCAGAGAGGCAAAATAAGCAAGCTGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
TGCTACCGCAACCCTCAGTACAGTCCGATCATAGACTGGAATGAACTCCGTATGCATAAGTCAAC
CCACGAAACAAGCGTGCAGGGGCTCAACCGACCGGAAAGGCATAATGCGCAAGCGAGGGATCACC
CAGGTCCCCCTCTGCGTGCTGCTGATCCCGCAACCGATCCCGCTGCCACAACCCTCGATCCGGCT
GGG
Found at i:11918984 original size:158 final size:158
Alignment explanation
Indices: 11918702--11919264 Score: 571
Period size: 157 Copynumber: 3.6 Consensus size: 158
11918692 CTTAGACATA
* * *
11918702 GAATGAACTACGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG-CGGCAGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGA
* * * * *
11918766 GGCAGAATGCGTAAGCCGGGGATTGGCCCGATCCCCTGCTATGTGCTGTCGATTCTGCTGCCGGA
66 GGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCT-CTGTGTGCTGTCGATCCTGCTGCCGCA
*
11918831 ACCCTCGGTCCGGTCCGATCTTAGGCTGG
130 ACCCTCGGTCCGGTCCGATCTTAGACTGG
* ** * ** *
11918860 GAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGTATTCGGGCGCGGAGCCGACCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGA
* * * * * *
11918924 GGCATAATACGCAAGCCGGGGATCGGCCCAATCCCCCTCTGTGTGCTGTCGGTCCCGCTGCTGCA
66 GGCAGAATGCGCAAGCCGGGGATCGGCCCGAT-CCCCTCTGTGTGCTGTCGATCCTGCTGCCGCA
* * * *
11918989 ACCCTCGGTCCGG-CTGGGTTTTAGACAT-T
130 ACCCTCGGTCCGGTC-CGATCTTAGAC-TGG
* * * * *
11919018 GAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC-AGGCGTGCTGGCGCTCAGCTGGTCGGAG
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCAGCCGGCCGGAG
* * * * * *
11919082 AGGCAGAATGCGCAAGTCAGGGATCGGCCCGGTCCCC-CTGCGTGCTGTCGATCCTACTGCCGTA
65 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCTCTGTGTGCTGTCGATCCTGCTGCCGCA
* * * *
11919146 ACCCTCAGTCTGATCTGATCTTAGACTGG
130 ACCCTCGGTCCGGTCCGATCTTAGACTGG
* * * * * * * *
11919175 GAATGAACTCCATATGCCTAAGTCAACCCATGAAACAAGCGTACGGACGCTCAGCCGACCAGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGA
* * *
11919240 GGCAGGATGTGCAAGTCGGGGATCG
66 GGCAGAATGCGCAAGCCGGGGATCG
11919265 AACGGGTGGT
Statistics
Matches: 326, Mismatches: 70, Indels: 19
0.79 0.17 0.05
Matches are distributed among these distances:
156 1 0.00
157 151 0.46
158 101 0.31
159 73 0.22
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGA
GGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCTCTGTGTGCTGTCGATCCTGCTGCCGCAA
CCCTCGGTCCGGTCCGATCTTAGACTGG
Found at i:11919898 original size:26 final size:26
Alignment explanation
Indices: 11919861--11919913 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11919851 GGCTCAAAAT
*
11919861 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
11919887 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
11919913 C
1 C
11919914 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:11920255 original size:26 final size:26
Alignment explanation
Indices: 11920217--11920269 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11920207 CCGGTCCGAT
11920217 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
11920243 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
11920269 C
1 C
11920270 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:11920404 original size:184 final size:184
Alignment explanation
Indices: 11920058--11920427 Score: 492
Period size: 184 Copynumber: 2.0 Consensus size: 184
11920048 TCCGACTGGG
*
11920058 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCTCAA
** * * * * * * *
11920123 CCGGTCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCCTAGTCACCCCTGTGTGCTGTCGATCC
66 CCGACCAGAGAGGCAGAATACACAAGCCGGGGATCGGCCCAATCACCCCTGCGTGCTATCGATCC
* * * * * *
11920188 TGTTGCCGCAACCCGTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTAT
131 GGCTACCACAACCCGTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
11920242 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCTCAA
* *
11920307 CCGACCAGAGAGGCAGAATATACAAGCCGGGGATCGGCCCAATC-CCTCCTGCGTGCTATCGATT
66 CCGACCAGAGAGGCAGAATACACAAGCCGGGGATCGGCCCAATCACC-CCTGCGTGCTATCGATC
* *
11920371 CGGCTACCACAACCC-TCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTAT
130 CGGCTACCACAACCCGT-GGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
11920426 GC
1 GC
11920428 CTAAGTCAAC
Statistics
Matches: 160, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
183 3 0.02
184 157 0.98
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCTCAA
CCGACCAGAGAGGCAGAATACACAAGCCGGGGATCGGCCCAATCACCCCTGCGTGCTATCGATCC
GGCTACCACAACCCGTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:11921597 original size:26 final size:26
Alignment explanation
Indices: 11921556--11921608 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11921546 CCGGTCCAAT
11921556 CTTAGACTAGGAATGAAC-CCTGTATG
1 CTTAGACTAGGAATGAACTCC-GTATG
* *
11921582 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11921608 C
1 C
11921609 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11921851 original size:171 final size:170
Alignment explanation
Indices: 11921581--11921949 Score: 429
Period size: 171 Copynumber: 2.2 Consensus size: 170
11921571 AACCCTGTAT
* ** * *
11921581 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTTAACCCATTAAAAGAGCGTGCGGGGGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATCAAAAGAGCGTGCGGGGGCTCAA
* *
11921646 CCAGCCGGAAAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTTTGCGTGCTACCGATC
66 CCAGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCC-CTGCGTGCTACCGATC
* *
11921711 CCGCTGCCGGTCCTGCTACCACAACCCTCGGTCCGGCTAGG
130 CCACTGCCGGTCCTACTACCACAACCCTCGGTCCGGCTAGG
*
11921752 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA-CAAAACGAGCGTGCGGGTGCTC
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATCAAAA-GAGCGTGCGGGGGCTC
* * * * * * * **
11921815 AACCGGTCGGAGAGGCAGAATGTGCAAGCTGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGAT
64 AACCAGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTACCGAT
* * * ** *
11921880 CCTACTGCTGGTCCTACTGCCGTAACCCTCGGTCCGGTCT-GA
129 CCCACTGCCGGTCCTACTACCACAACCCTCGGTCCGG-CTAGG
* * *
11921922 TCTTAGACTGGGAAAGAACTCTGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
11921950 TTAGACATGG
Statistics
Matches: 166, Mismatches: 28, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
169 1 0.01
170 70 0.42
171 94 0.57
172 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.20
Consensus pattern (170 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATCAAAAGAGCGTGCGGGGGCTCAA
CCAGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTACCGATCC
CACTGCCGGTCCTACTACCACAACCCTCGGTCCGGCTAGG
Found at i:11921952 original size:26 final size:26
Alignment explanation
Indices: 11921923--11921975 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11921913 CCGGTCTGAT
*
11921923 CTTAGAC-TGGGAAAGAACTCTGTATG
1 CTTAGACAT-GGAAAGAACTCCGTATG
*
11921949 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAAAGAACTCCGTATG
11921975 C
1 C
11921976 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAAAGAACTCCGTATG
Found at i:11922039 original size:367 final size:352
Alignment explanation
Indices: 11921359--11922084 Score: 846
Period size: 367 Copynumber: 2.0 Consensus size: 352
11921349 CTCTCTGCGT
* * * * * * *
11921359 GCTGTCGGTCCCGCTGCCATAACCCTCTATCTGGCTGGGGCTTAGAGATGGAATGAACTCCCTAT
1 GCTGCCGGTCCCGCTACCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTAT
** * * * *
11921424 GCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGTTCAGCAGGCCAGAGAGGCAGAATGCACAAG
66 GCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAACAGGCCAGAGAGGCAGAATGCACAAG
11921489 CCGGGGATCAGCACGATCCCCCTGCCTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCCA
131 CCGGGGATCAGCACGATCCCCCTGCCTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCCA
* * **
11921554 ATCTTAGACTAGGAATGAACCCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTTAAC
196 ATCTTAGACTAGGAAAGAACCCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
11921619 CCATTAAAAGAGCGTGCGGGGGCTCAGCCAGCCGGAAAGGCATAATGCGCAAGCCGGGGATCA-G
261 CCATGAAAAGAGCGTGCGGGGGCTCAGCCAGCCGGAAAGGCAGAATGCGCAAGCCGAGGAT-AGG
*
11921683 CCCGATCCCCCTTTGCGTGCTACCGATCCC
325 CCCGAGCCCCC--TGCGTGCTACCGATCCC
* * *
11921713 GCTGCCGGTCCTGCTACCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTAT
1 GCTGCCGGTCCCGCTACCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTAT
* * * **
11921778 GCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAACCGGTCGGAGAGGCAGAATGTGCAAG
66 GCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAACAGGCCAGAGAGGCAGAATGCACAAG
* * * * * *
11921843 CTGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCCTACTGCTGGTCCTACTGCCGTAACCC
131 CCGGGGATCAGCACGAT-CCCCCTGCCTGCTGCCGA---T-C--CT-G--CTA---CCGCAACCC
** * *
11921908 TCGGTCCGGTCTGATCTTAGACTGGGAAAGAACTCTGTATGCTTAGACAT-GGAATGAACTCCGT
183 TCGGTCCGGTCCAATCTTAGACTAGGAAAGAACCCTGTATGCTTAGAC-TGGGAATGAACTCCGT
* * * * *
11921972 ATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGTC-GACTGGAGAGGCAGAATGCGC
247 ATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGGGCTCAGCCAG-CCGGAAAGGCAGAATGCGC
* * *
11922036 AAGCCGAGGATAGGCCCGGGCCCCCTGCGTGCTATCGATCCT
311 AAGCCGAGGATAGGCCCGAGCCCCCTGCGTGCTACCGATCCC
11922078 GCTGCCG
1 GCTGCCG
11922085 CAACCCTTGG
Statistics
Matches: 309, Mismatches: 47, Indels: 21
0.82 0.12 0.06
Matches are distributed among these distances:
354 123 0.40
355 16 0.05
358 1 0.00
359 1 0.00
361 2 0.01
362 1 0.00
364 3 0.01
365 22 0.07
366 2 0.01
367 137 0.44
368 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (352 bp):
GCTGCCGGTCCCGCTACCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTAT
GCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAACAGGCCAGAGAGGCAGAATGCACAAG
CCGGGGATCAGCACGATCCCCCTGCCTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCCA
ATCTTAGACTAGGAAAGAACCCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CCATGAAAAGAGCGTGCGGGGGCTCAGCCAGCCGGAAAGGCAGAATGCGCAAGCCGAGGATAGGC
CCGAGCCCCCTGCGTGCTACCGATCCC
Found at i:11922362 original size:159 final size:155
Alignment explanation
Indices: 11921948--11922363 Score: 458
Period size: 159 Copynumber: 2.6 Consensus size: 155
11921938 AACTCTGTAT
* *
11921948 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * *
11922013 TCGACTGGAGAGGCAGAATGCGCAAGCCGAGGATAGGCCCGGGCCCCCTGCGTGCTATCGATCCT
66 -CCACTGGAGAGGCAGAATGCGCAAGCCG-GGATCCGCCCGGCCCCCCTGCGTGCTATCGATCCC
* * * *
11922078 GCTGCCGCAACCCTTGGTCCGATTTGA
129 GCTGCCACAACCCTCGGTCCGACTGGA
* * * * * ** *
11922105 TCTTAGAC-TGGGAATGGACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
11922169 GCCGACTGGAGATGCATG-ATGCGCAAGCCGGGGATCCGCTCGGTCCCCCTCTGCGTGTTGTCGG
65 GCC-ACTGGAGAGGCA-GAATGCGCAAGCC-GGGATCCGCCCGG-CCCCC-CTGCGTGCTATCGA
*
11922233 TCCCGCTGCCACAACCCTCGGTCCGACTGGG
125 TCCCGCTGCCACAACCCTCGGTCCGACTGGA
* * *
11922264 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
11922329 CCAATAGGAGAGGTAGAATGCGCAAGCCAGGGATC
66 CCACT-GGAGAGGCAGAATGCGCAAGCC-GGGATC
11922364 GACCCAGTCC
Statistics
Matches: 210, Mismatches: 40, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
156 2 0.01
157 84 0.40
158 9 0.04
159 114 0.54
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.30, T:0.18
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCACTGGAGAGGCAGAATGCGCAAGCCGGGATCCGCCCGGCCCCCCTGCGTGCTATCGATCCCGC
TGCCACAACCCTCGGTCCGACTGGA
Found at i:11922453 original size:26 final size:26
Alignment explanation
Indices: 11922424--11922474 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11922414 CGGTCCGATC
*
11922424 TTAGATTAGGAATGAACTCCGTATGG
1 TTAGACTAGGAATGAACTCCGTATGG
*
11922450 TTAGACTAGGGATGAACTCCGTATG
1 TTAGACTAGGAATGAACTCCGTATG
11922475 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGG
Found at i:11923675 original size:26 final size:26
Alignment explanation
Indices: 11923646--11923698 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11923636 CCGATCCGAT
*
11923646 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACACCGTATG
* *
11923672 CTTAGACTGGGGATGAACACCGTATG
1 CTTAGACTAGGAATGAACACCGTATG
11923698 C
1 C
11923699 CTAAGTCAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACACCGTATG
Found at i:11924052 original size:26 final size:26
Alignment explanation
Indices: 11924014--11924066 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11924004 CCGATCCAAT
*
11924014 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11924040 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
11924066 C
1 C
11924067 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11924067 original size:184 final size:184
Alignment explanation
Indices: 11923855--11924223 Score: 526
Period size: 184 Copynumber: 2.0 Consensus size: 184
11923845 TCCAACTGGG
* *
11923855 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTAC-AGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGA-GCGCTCA
** * * * *
11923919 ACCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTTCTGTCGATC
65 ACCGACCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCCTACGTGCTGTCCATC
* * * *
11923984 CTACTGCTGCAACCCTCGGTCC-GATCCAATCTTAGACTGGGAATGAACTTCGTAT
130 CTACTACCGCAACCCTCAGTCCAG-TCCAATCTTAGACTGGGAATGAACTCCGTAT
*
11924039 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGAGCGCTCAA
* * *
11924104 CCGACCGGAGAGGTAGAATGCACAAGTCGAGGATCGGCCCGGTCCCCCTTACGTGCTGTCCATCC
66 CCGACCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCCTACGTGCTGTCCATCC
* * **
11924169 TGCTACCGCAACCGTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
131 TACTACCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTAT
11924223 G
1 G
11924224 GCTGAGTAAA
Statistics
Matches: 163, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
184 161 0.99
185 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGAGCGCTCAA
CCGACCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCCTACGTGCTGTCCATCC
TACTACCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTAT
Found at i:11926538 original size:60 final size:60
Alignment explanation
Indices: 11926445--11926568 Score: 212
Period size: 60 Copynumber: 2.1 Consensus size: 60
11926435 CCAATCTACA
* * * *
11926445 AAGAAGGGTCGAAAATAGAACCAATACTTGATGGTGTGGGAAAAGTGTTGGAAGAATTTG
1 AAGAAGGGTCAAAAATAGAACCAATACCTGATGGTGTGGGAAAAGTGTTGGAAAAATTCG
11926505 AAGAAGGGTCAAAAATAGAACCAATACCTGATGGTGTGGGAAAAGTGTTGGAAAAATTCG
1 AAGAAGGGTCAAAAATAGAACCAATACCTGATGGTGTGGGAAAAGTGTTGGAAAAATTCG
11926565 AAGA
1 AAGA
11926569 GGTGATGCCA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.41, C:0.08, G:0.30, T:0.21
Consensus pattern (60 bp):
AAGAAGGGTCAAAAATAGAACCAATACCTGATGGTGTGGGAAAAGTGTTGGAAAAATTCG
Found at i:11930235 original size:26 final size:26
Alignment explanation
Indices: 11930199--11930251 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11930189 TTGGTTCGAT
11930199 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
11930225 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11930251 C
1 C
11930252 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11930957 original size:26 final size:26
Alignment explanation
Indices: 11930919--11930968 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
11930909 GGCTCAAAAT
*
11930919 CTTAGACTGGGAATGAACTTTGTACG
1 CTTAGACTGGGAATGAACTCTGTACG
11930945 CTTAGACAT-GGAATGAACTCTGTA
1 CTTAGAC-TGGGAATGAACTCTGTA
11930969 TTCCTAAGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTACG
Found at i:11931448 original size:26 final size:26
Alignment explanation
Indices: 11931419--11931471 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11931409 CTGGTCTGAT
* * *
11931419 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
11931445 CTTAGACTGGGGATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
11931471 C
1 C
11931472 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:11932600 original size:157 final size:157
Alignment explanation
Indices: 11932167--11932602 Score: 403
Period size: 158 Copynumber: 2.8 Consensus size: 157
11932157 CTTCTATGCT
* * * * *
11932167 TAGACATGGAATGAACTCCGTATTCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTTAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGATCAGCCG
* ** * * * **
11932232 GTCGGAGAGGCAGAATGCTTAAGCCGGGGATTGGCCCGGTCCCCCCCTACGTGCTGTCAATCCTG
66 GCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGT--CCCCCTACGTGCTGTCAACCCCA
* ** * * * *
11932297 CTGTCGTAACCCTTGGTCTAGTCTGATCT
129 CTGCCACAACCCTCGGTCCAGTCTGAGCG
* * * * * * * *
11932326 TAGAC-TAGTAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGTGT-AGGGC-ACTGAGC
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGA-TCAGC
* * * * * * **
11932388 CGGCCGCAGAGGCATAGTGCGGAAGCCGGGGATCGACCTGGTCCCCTCAACGTGCTGTCGGCCCC
64 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCC-CTACGTGCTGTCAACCCC
*
11932453 ACTGCCACAACCCTCGGTCCAG-CTGGGGCG
128 ACTGCCACAACCCTCGGTCCAGTCT-GAGCG
* *
11932483 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGATCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGATCAGCCG
* * * *
11932548 ACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAGTCCCCCTATGTGCTGT
66 GCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTACGTGCTGT
11932603 TGATCCTGCT
Statistics
Matches: 215, Mismatches: 55, Indels: 16
0.75 0.19 0.06
Matches are distributed among these distances:
156 6 0.03
157 80 0.37
158 89 0.41
159 40 0.19
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGATCAGCCG
GCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTACGTGCTGTCAACCCCACT
GCCACAACCCTCGGTCCAGTCTGAGCG
Found at i:11932621 original size:157 final size:157
Alignment explanation
Indices: 11932167--11932664 Score: 448
Period size: 157 Copynumber: 3.2 Consensus size: 157
11932157 CTTCTATGCT
* * * * *
11932167 TAGACATGGAATGAACTCCGTATTCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTTAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGATCAGCCG
* ** * * *
11932232 GTCGGAGAGGCAGAATGCTTAAGCCGGGGATTGGCCCGGTCCCCCCCTACGTGCTGTCAATCCTG
66 GCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGT--CCCCCTACGTGCTGTCGATCCTG
* * * * *
11932297 CTGTCGTAACCCTTGGTCTAGTCTGATCT
129 CTGCCGCAACCCTTGGTCCAGTCTGAGCG
* * * * * * * *
11932326 TAGAC-TAGTAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGTGT-AGGGC-ACTGAGC
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGA-TCAGC
* * * * * * ** *
11932388 CGGCCGCAGAGGCATAGTGCGGAAGCCGGGGATCGACCTGGTCCCCTCAACGTGCTGTCGGCCCC
64 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCC-CTACGTGCTGTCGATCCT
* * * *
11932453 ACTGCCACAACCCTCGGTCCAG-CTGGGGCG
128 GCTGCCGCAACCCTTGGTCCAGTCT-GAGCG
* *
11932483 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGATCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGATCAGCCG
* * * * *
11932548 ACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAGTCCCCCTATGTGCTGTTGATCCTGCT
66 GCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTACGTGCTGTCGATCCTGCT
* ** * *
11932613 ACCGCAACCCTTGGTCTGGTCTGATCT
131 GCCGCAACCCTTGGTCCAGTCTGAGCG
*
11932640 TAGAC-TGGGAATGAACTCCTTATGC
1 TAGACAT-GGAATGAACTCCGTATGC
11932665 TTAGATTGGG
Statistics
Matches: 261, Mismatches: 69, Indels: 20
0.75 0.20 0.06
Matches are distributed among these distances:
156 7 0.03
157 123 0.47
158 91 0.35
159 40 0.15
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGATCAGCCG
GCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTACGTGCTGTCGATCCTGCT
GCCGCAACCCTTGGTCCAGTCTGAGCG
Found at i:11932674 original size:26 final size:26
Alignment explanation
Indices: 11932638--11932690 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11932628 CTGGTCTGAT
* *
11932638 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* *
11932664 CTTAGATTGGGGATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
11932690 C
1 C
11932691 CTATGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:11933398 original size:26 final size:26
Alignment explanation
Indices: 11933361--11933413 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11933351 GGCTCAAAAT
*
11933361 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
11933387 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
11933413 C
1 C
11933414 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:11933843 original size:158 final size:157
Alignment explanation
Indices: 11933389--11933886 Score: 466
Period size: 158 Copynumber: 3.2 Consensus size: 157
11933379 TCCGTATGCT
* * * * * *
11933389 TAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGCGGGTGCTCAACCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCAG
* ** *
11933454 GTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTTGGT-CCTCCTACGTGCTGTCGATCCTAC
66 G-CCGAGAGGCAGAATGCGCAAGCCGAGGATCGGCACGGTCCCCCCTACGTGCTGTCGATCCTAC
* * * *
11933518 TACCGCAACCCCCGGTCCGGTCTGATCT
130 TGCCGCAACCCTCGGTCCGGTCTGAGCG
* * * * * * * *
11933546 TAGACTGGGTATGAAATCAGTATGCATAAGTCAACCC-TGAAACGAGCGCGCGGGCGCTGAG-AC
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCA-
* * * * * * *
11933609 GGCCGAAGAGACATAATGCGCAAGCTGAGGATCGGCCCGATCCCCCTCTATGTGC-GATCGGTCC
65 GGCCG-AGAGGCAGAATGCGCAAGCCGAGGATCGGCACGGTCCCCC-CTACGTGCTG-TCGATCC
* * * *
11933673 CACTGCCACAACCCTCGGTCTGG-CTGGGGCG
127 TACTGCCGCAACCCTCGGTCCGGTCT-GAGCG
* * *
11933704 TAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCAG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCAG
* * * *
11933769 GCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACACGGTCCCCCCTGCGTGCTGTCGATCCTAT
66 GCC-GAGAGGCAGAATGCGCAAGCCGAGGATCGGCACGGTCCCCCCTACGTGCTGTCGATCCTAC
* ** * * *
11933834 TGCCGCAACCCTCGATCCAATCCGATCT
130 TGCCGCAACCCTCGGTCCGGTCTGAGCG
* *
11933862 TAGACTGGGGATGAACTTCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
11933887 TTAGACTGGG
Statistics
Matches: 262, Mismatches: 68, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
155 2 0.01
156 48 0.18
157 37 0.14
158 114 0.44
159 59 0.23
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (157 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCAG
GCCGAGAGGCAGAATGCGCAAGCCGAGGATCGGCACGGTCCCCCCTACGTGCTGTCGATCCTACT
GCCGCAACCCTCGGTCCGGTCTGAGCG
Found at i:11933896 original size:26 final size:26
Alignment explanation
Indices: 11933860--11933912 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11933850 CCAATCCGAT
11933860 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGGATGAACTTCGTATG
11933886 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGGATGAACTTCGTATG
11933912 C
1 C
11933913 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTTCGTATG
Found at i:11934670 original size:11 final size:11
Alignment explanation
Indices: 11934654--11934690 Score: 74
Period size: 11 Copynumber: 3.4 Consensus size: 11
11934644 GCTCTTCGGT
11934654 GATGCTCCGAC
1 GATGCTCCGAC
11934665 GATGCTCCGAC
1 GATGCTCCGAC
11934676 GATGCTCCGAC
1 GATGCTCCGAC
11934687 GATG
1 GATG
11934691 GTGCCTTGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.19
Consensus pattern (11 bp):
GATGCTCCGAC
Found at i:11934798 original size:26 final size:26
Alignment explanation
Indices: 11934760--11934810 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
11934750 GGCTCAAAAT
** *
11934760 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
11934786 CTTAGACAAGGAATGAACTCCGTAT
1 CTTAGACAAGGAATGAACTCCGTAT
11934811 ACCTAAGCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:11935088 original size:159 final size:158
Alignment explanation
Indices: 11934785--11935237 Score: 473
Period size: 159 Copynumber: 2.9 Consensus size: 158
11934775 AACTTCGTAT
* * * * * ** **
11934785 GCTTAGACAAGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACAAGCATGTGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCAGGCACTCAG
*** * *
11934850 CTGGCCGAAGAGGTAGAAT-CGCAAGTCGAGGATCGGCCCGGTCTCCCCCTACGTGCTATCGATC
66 CCAACCGAAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTC-CCCCCTACATGCTATCGATC
* ** *
11934914 CTGGTGCTGCAACCCTCGGTCTGGTCT-GA
130 CTGCTGCAACAACCCTCGGTCT-GACTGGA
* * * * *
11934943 TCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCAGGCACTCA
* * *
11935007 GCCAACCGAAGAGGCATAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCTCTGCATGCTATCGGT
65 GCCAACCGAAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCC-CTACATGCTATCGAT
* *
11935072 CTTGCTGCAACAACCCTCGGTCTGACTGGG
129 CCTGCTGCAACAACCCTCGGTCTGACTGGA
* * * * **
11935102 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCAGGCACTCAG
* * * * * *
11935167 CCGATCGGAGAGGCAGAATGCGCAAGTCG-GAGATCAGCCCGGTCCCCCCTACGTGCTGTCGATC
66 CCAACCGAAGAGGCAGAATGCGCAAGTCGAG-GATCGGCCCGGTCCCCCCTACATGCTATCGATC
11935231 CTGCTGC
130 CTGCTGC
11935238 TGGTCCTGCT
Statistics
Matches: 240, Mismatches: 49, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
158 90 0.38
159 149 0.62
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCAGGCACTCAG
CCAACCGAAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCCTACATGCTATCGATCC
TGCTGCAACAACCCTCGGTCTGACTGGA
Found at i:11935644 original size:159 final size:157
Alignment explanation
Indices: 11935298--11935661 Score: 405
Period size: 157 Copynumber: 2.3 Consensus size: 157
11935288 AACTCCGTAT
* * *
11935298 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATACGGGCACTCAG
* * * *
11935363 CCGACTGGAGAGGCTGAATGCACAAGTCGGGGACCGATCCGGTCCCCCTGCATGCTGTCGATCCT
66 CCGACTGGAGAGGCTGAATGCACAAGCCAGGGACCGACCCGGTCCCCCTGCATGCTGCCGATCCT
* *
11935428 GCTGCCGCAACCCTCGGTCTAGTTCGA
131 GCTGCCACAACCCTCGGTCTAGCTCGA
* * * * * * * *
11935455 TCTTAGATAGGGAATAAACTTCGTATGCCTAAGTCAACCCACT-AAACT-AGCGTACGGGCACTG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCA-TGAAA-TGAGCATACGGGCACTC
* * *
11935518 AGCC-AGTCGGAGAGGCAT-AATGCGCAAGCCAGGGATCGACCCGGTCCCCCT-CTACGTGCTGC
64 AGCCGACT-GGAGAGGC-TGAATGCACAAGCCAGGGACCGACCCGGTCCCCCTGC-A--TGCTGC
* * * *
11935580 CGGTCCTGCTGCCACAACCCTCGGTCTGGCTGGG
124 CGATCCTGCTGCCACAACCCTCGGTCTAGCTCGA
*
11935614 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATG
11935662 GGCGTGCAGG
Statistics
Matches: 168, Mismatches: 30, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
156 3 0.02
157 90 0.54
158 5 0.03
159 70 0.42
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATACGGGCACTCAG
CCGACTGGAGAGGCTGAATGCACAAGCCAGGGACCGACCCGGTCCCCCTGCATGCTGCCGATCCT
GCTGCCACAACCCTCGGTCTAGCTCGA
Found at i:11935688 original size:159 final size:157
Alignment explanation
Indices: 11935298--11935799 Score: 451
Period size: 159 Copynumber: 3.2 Consensus size: 157
11935288 AACTCCGTAT
* *
11935298 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * * * * *
11935363 CCGACTGGAGAGGC-TGAATGCACAAGTCGGGGACCGATCCGGTCCCCCTGCATGCTGTCGATCC
66 CCGGCCGGAGAGGCAT-AATGCGCAAGCCAGGGATCGACCCGGTCCCCCTGCATGCTGCCGATCC
* *
11935427 TGCTGCCGCAACCCTCGGTCTAGTTCGA
130 TGCTGCCACAACCCTCGGTCTAGCTCGA
* * * * * * * * *
11935455 TCTTAGATAGGGAATAAACTTCGTATGCCTAAGTCAACCCACT-AAACT-AGCGTACGGGCACTG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCA-TGAAA-TGAGCGTGCGGGCGCTC
* *
11935518 AGCCAGTCGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGGTCCCCCT-CTACGTGCTGCCG
64 AGCCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTGC-A--TGCTGCCG
* * * *
11935582 GTCCTGCTGCCACAACCCTCGGTCTGGCTGGG
126 ATCCTGCTGCCACAACCCTCGGTCTAGCTCGA
* * *
11935614 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCAGGCGCTCAG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * ** * **
11935679 CTGGCCGGAGCA-GCAGAATGCGTAAGCCAGGGATC-AGCCTTGTCCCCCCTACATGCTGTAGAT
66 CCGGCCGGAG-AGGCATAATGCGCAAGCCAGGGATCGA-CCCGGT-CCCCCTGCATGCTGCCGAT
* * * * *
11935742 CCTGCTACCGCAACCCTTGGTC-GGGTCTGA
128 CCTGCTGCCACAACCCTCGGTCTAGCTC-GA
* **
11935772 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACAAGGAATGAACTCCGTATGC
11935800 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 58, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
156 1 0.00
157 93 0.34
158 57 0.21
159 114 0.42
160 8 0.03
161 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTGCATGCTGCCGATCCT
GCTGCCACAACCCTCGGTCTAGCTCGA
Found at i:11935728 original size:512 final size:500
Alignment explanation
Indices: 11934758--11935895 Score: 1364
Period size: 512 Copynumber: 2.2 Consensus size: 500
11934748 GTGGCTCAAA
* * *
11934758 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACAAGGAATGAACTCCGTATACCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * *
11934823 CCATGAAACAAGCATGTGGGGGCTCAGCTGGCCGAAGAGG-TAGAAT-CGCAAGTCGAGGATCGG
66 CCATGAAACGAGCATGCGGGCGCTCAGC-CGCTGAAGAGGCT-GAATGCACAAGTCGAGGACCGA
* * *
11934886 CCCGGTCTCCCCCTACGTGCTATCGATCCTGGTGCTGCAACCCTCGGTCTGGTCTGATCTTAGAC
129 CCCGG-CTCCCCCTACATGCTATCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGAC
* *
11934951 TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCACTGAGCCAACCGA
193 TGGGAATAAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTACAGGCACTGAGCCAACCGA
* * * * *
11935016 AGAGGCATAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCTCTGCATGCTATCGGTCTTGCTGCA
258 AGAGGCATAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTACATGCTACCGGTCCTGCTGCA
* *
11935081 ACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGA
323 ACAACCCTCGGTCTGACTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
* * * *
11935146 AACGGGCATGCGGGGGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGTCGGAGATCAGCCCGGTC
388 AACGGGCATGCAGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGAGATCAGCCCGGTC
* * * *
11935211 CCCCCTACGTGCTGTCGATCCTGCTGCTGGTCCTGCTACAGCAAACCTCGATCTGATCCT-
453 CCCCCTACATGCTGTAGAT-C--CTGCT--ACC-GC-A-A-C---CCTCGATCGGAT-CTG
*
11935271 ATCTGAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
11935336 CCATGAAATGAGCATGCGGGCGCTCAGCCGACTGGAGAGGCTGAATGCACAAGTCGGGGACCGAT
66 CCATGAAACGAGCATGCGGGCGCTCAGCCG-CTGAAGAGGCTGAATGCACAAGTCGAGGACCGAC
* * *
11935401 CCGG-TCCCCCTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTAGT-TCGATCTTAGA-T
130 CCGGCTCCCCCTACATGCTATCGATCCTGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACT
* * * * **
11935463 AGGGAATAAACT-TCGTATGCCTAAGTCAACCCACTAAACTAGCGTACGGGCACTGAGCCAGTCG
194 -GGGAATAAACTCT-GTATGCATAAGTCAACCCACGAAACGAGCGTACAGGCACTGAGCCAACCG
* * *
11935527 GAGAGGCATAATGCGCAAGCC-AGGGATCGACCCGGTCCCCCTCTACGTGCTGCCGGTCCTGCTG
257 AAGAGGCATAATGCGCAAGCCGA-GGATCGACCCGGTCCCCCTCTACATGCTACCGGTCCTGCTG
* *
11935591 CCACAACCCTCGGTCTGGCTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCAT
321 CAACAACCCTCGGTCTGACTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * * * *
11935656 GAAATGGGCGTGCAGGCGCTCAGCTGGCCGGAGCA-GCAGAATGCGTAAGCCAGG-GATCAGCCT
386 GAAACGGGCATGCAGGCGCTCAGCCGACCGGAG-AGGCAGAATGCGCAAGCC-GGAGATCAGCCC
* * * *
11935719 TGTCCCCCCTACATGCTGTAGATCCTGCTACCGCAACCCTTGGTCGGGTCTG
449 GGTCCCCCCTACATGCTGTAGATCCTGCTACCGCAACCCTCGATCGGATCTG
* *
11935771 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
* * * *
11935835 CACATGAAACGAGCGTGCGAGCGCTCAGCCGGTCGAAGAGGCAT-AATGCACAAGTCGAGGA
65 CCCATGAAACGAGCATGCGGGCGCTCAGCCGCT-GAAGAGGC-TGAATGCACAAGTCGAGGA
11935896 TCAGCTCGAT
Statistics
Matches: 542, Mismatches: 70, Indels: 39
0.83 0.11 0.06
Matches are distributed among these distances:
499 4 0.01
500 117 0.22
501 1 0.00
503 1 0.00
504 1 0.00
505 1 0.00
506 2 0.00
507 2 0.00
509 5 0.01
511 5 0.01
512 286 0.53
513 99 0.18
514 18 0.03
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (500 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCATGAAACGAGCATGCGGGCGCTCAGCCGCTGAAGAGGCTGAATGCACAAGTCGAGGACCGACC
CGGCTCCCCCTACATGCTATCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGG
GAATAAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTACAGGCACTGAGCCAACCGAAGA
GGCATAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTACATGCTACCGGTCCTGCTGCAACA
ACCCTCGGTCTGACTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC
GGGCATGCAGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGAGATCAGCCCGGTCCCC
CCTACATGCTGTAGATCCTGCTACCGCAACCCTCGATCGGATCTG
Found at i:11935809 original size:26 final size:26
Alignment explanation
Indices: 11935773--11935825 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11935763 CGGGTCTGAT
11935773 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11935799 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11935825 C
1 C
11935826 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11936211 original size:26 final size:26
Alignment explanation
Indices: 11936171--11936223 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
11936161 GGCTCAACCT
11936171 CTTAGACTGGAAATGAACT-TCGTAAG
1 CTTAGACTGGAAATGAACTCT-GTAAG
11936197 CTTAGACATGG-AATGAACTCTGTAAG
1 CTTAGAC-TGGAAATGAACTCTGTAAG
11936223 C
1 C
11936224 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCTGTAAG
Found at i:11937293 original size:27 final size:26
Alignment explanation
Indices: 11937237--11937289 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11937227 CCGATCCGAT
11937237 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11937263 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11937289 C
1 C
11937290 CTTAAGTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11938614 original size:26 final size:26
Alignment explanation
Indices: 11938585--11938635 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
11938575 GGTTCGATCC
*
11938585 TAGACTAGGAACGAACTTCGTATGCT
1 TAGACTAGGAACGAACTCCGTATGCT
* * *
11938611 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTAGGAACGAACTCCGTATGC
11938636 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAACGAACTCCGTATGCT
Found at i:11939381 original size:159 final size:158
Alignment explanation
Indices: 11939131--11939428 Score: 366
Period size: 159 Copynumber: 1.9 Consensus size: 158
11939121 TTGCTACCGT
* * *
11939131 AACCCTCAGTCCGATCTGAACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
1 AACCCTCAGTCCGATCTGAACTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAA
* * ** * * * *
11939196 CAAGCGTGCGGGTGCTAAGCCAATCGGGGAGGCATAATGTGCAAGCCAGGGATCGGCCCGGTCCC
66 CAAGCGTACAGACGCTAAGCCAATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTACC
11939261 TCTCTGCGTGCTGCAGGTCCTGTTGCCAC
131 TC-CTGCGTGCTGCAGGTCCTGTTGCCAC
**
11939290 AACCCTCAGTCCGA-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAAACCATGA
1 AACCCTCAGTCCGATCT-GAACTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAAACCATGA
*** * * * * *
11939353 AATGGGCGTACAGACGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCGGTA
64 AACAAGCGTACAGACGCTAAGCCAATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTA
11939418 CCTCCTGCGTG
129 CCTCCTGCGTG
11939429 TTTCCAATCC
Statistics
Matches: 116, Mismatches: 21, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
158 9 0.08
159 106 0.91
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
AACCCTCAGTCCGATCTGAACTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAA
CAAGCGTACAGACGCTAAGCCAATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTACC
TCCTGCGTGCTGCAGGTCCTGTTGCCAC
Found at i:11940238 original size:26 final size:26
Alignment explanation
Indices: 11940200--11940252 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11940190 GGCTCAAAAT
11940200 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11940226 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
11940252 C
1 C
11940253 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11940780 original size:26 final size:26
Alignment explanation
Indices: 11940751--11940803 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11940741 CCGATTCGAT
*
11940751 CTTAGAC-TCAGAATGAACTCCGTATG
1 CTTAGACAT-AGAATGAACTACGTATG
*
11940777 CTTAGACATGGAATGAACTACGTATG
1 CTTAGACATAGAATGAACTACGTATG
11940803 C
1 C
11940804 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATAGAATGAACTACGTATG
Found at i:11941131 original size:159 final size:158
Alignment explanation
Indices: 11940776--11941134 Score: 375
Period size: 158 Copynumber: 2.3 Consensus size: 158
11940766 AACTCCGTAT
* * * *
11940776 GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAATGAGAGTGTAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGACTGTAGGCGCTCAG
* * * * * *
11940841 CCAACCGGAGAGGCAGAATGAGCAAGTCGGGGATCGACCTGATCCCCCCTGTGTGCTGTCGATCC
66 CCAACCGAAGAGGCAGAATAAGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCC
* ** * * *
11940906 TACTGCTGCAACCCTTGGTCTGGTCTGA
131 TACTACCACAAACCTCGGTCTGGACTGA
* * * *
11940934 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAG-CT-TACGAGCGTT
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGACTGTA-G-GCGCT
* * * * *
11940996 GAGCCGACCGAAGAGGCATAATAAGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCG
63 CAGCCAACCGAAGAGGCAGAATAAGCAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTGCCG
* *
11941061 ATCCTGCTACCACAAACCTCGGTCT-GACTAGG
127 ATCCTACTACCACAAACCTCGGTCTGGACT-GA
* * *
11941093 GCTTAGACATGGAATGACCTCCCTATACCTAAGCCAACCCAC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
11941135 GAAACGGGCG
Statistics
Matches: 162, Mismatches: 33, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
156 2 0.01
157 3 0.02
158 91 0.56
159 65 0.40
160 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGACTGTAGGCGCTCAG
CCAACCGAAGAGGCAGAATAAGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCC
TACTACCACAAACCTCGGTCTGGACTGA
Found at i:11942012 original size:26 final size:26
Alignment explanation
Indices: 11941974--11942026 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11941964 GGCTCAAAAT
11941974 CTTAGACTAGGAATCAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
*
11942000 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATCAACTCCGTATG
11942026 C
1 C
11942027 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCGTATG
Found at i:11942301 original size:159 final size:159
Alignment explanation
Indices: 11941999--11942421 Score: 397
Period size: 159 Copynumber: 2.7 Consensus size: 159
11941989 AACTCCGTAT
*** * *
11941999 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATAAATAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * ** * *
11942064 TTGACCGGAGAGGTAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCTCCCTACGTGTTGTCGATC
66 CTGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCTCCCTACGTGATCTCGATC
* *
11942129 CTGCTATCGCAACCCTCGATCCGATCCGA
131 CTGCTACCACAACCCTCGATCCGATCCGA
* * * * *
11942158 TCTTAGAC-TAGGAATGAACTCCGTATAAATAAGTCAACCCATGAAACGAGCTTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATAAATAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* *
11942222 GCTGATCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCAGTCCC-CCTCTACGTGCATCT-G
65 GCTGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCTCC-CTACGTG-ATCTCG
* * * ** *
11942285 GT-CTCGCTGCCACAACCCTCGGTCCGATTGGG
128 ATCCT-GCTACCACAACCCTCGATCCGATCCGA
* *** * ** * * *
11942317 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAGTGGGTGTACAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATAAATAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * *
11942382 -TCAGCCGAAGAGGCAGAATACGCAAGCCGGGGATCAGCCC
66 CTGA-CCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCC
11942422 GGTACCCCTG
Statistics
Matches: 210, Mismatches: 48, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
158 7 0.03
159 200 0.95
160 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATAAATAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CTGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCTCCCTACGTGATCTCGATC
CTGCTACCACAACCCTCGATCCGATCCGA
Found at i:11943228 original size:159 final size:157
Alignment explanation
Indices: 11943049--11943341 Score: 365
Period size: 159 Copynumber: 1.9 Consensus size: 157
11943039 CTAAGACTGG
* * ** * ** *
11943049 GAATGAACTCCGTATGCCTAAGTCAACCCGTGTAACGAGCGTTTGGGCACTGAGCCGGCC-GAAA
1 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCCGGCCAG-AA
*
11943113 AGGCAT-AATGCGCAAGTCGAGGATCGACCCAGTCCCCCTCTGCGTGCTGTCGATCCTGCTGTCA
65 AGG-ATAAATGCGCAAGTCGAGGATCGACCCAGT-CCCC-CTGCGTGCTGTCGATCCTGCTATCA
*
11943177 CAATCCTCAGTCTGACTGGGGCTTCGACATT
127 CAACCCTCAGTCTGACTGGGGCTTCGACATT
* * *
11943208 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGCCGGCCAGAGA
1 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCCGGCCAGAAA
* * * ** *
11943273 GGTTAAATGCGTAAGTCGGGGATCGACCTGGTCCCCCTGTGTGCTGTCGATCCTGCTATCACAAC
66 GGATAAATGCGCAAGTCGAGGATCGACCCAGTCCCCCTGCGTGCTGTCGATCCTGCTATCACAAC
11943338 CCTC
131 CCTC
11943342 GGTCCGGTCT
Statistics
Matches: 113, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
157 30 0.27
158 5 0.04
159 77 0.68
160 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (157 bp):
GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCCGGCCAGAAA
GGATAAATGCGCAAGTCGAGGATCGACCCAGTCCCCCTGCGTGCTGTCGATCCTGCTATCACAAC
CCTCAGTCTGACTGGGGCTTCGACATT
Found at i:11943386 original size:26 final size:26
Alignment explanation
Indices: 11943357--11943407 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
11943347 GGTCTGATCC
*
11943357 TAGACTGGGAATAAACTCTGTATGCT
1 TAGACTGGGAATAAACTCCGTATGCT
* *
11943383 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATAAACTCCGTATGC
11943408 CTAAGCCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATAAACTCCGTATGCT
Found at i:11944621 original size:26 final size:26
Alignment explanation
Indices: 11944592--11944642 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
11944582 CGGTCTGATC
*
11944592 TTAGAC-TGGGAATGAACTCTGTATGA
1 TTAGACAT-GGAATGAACTCCGTATGA
*
11944618 TTAGACATGGATTGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
11944643 CCTAAGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGA
Found at i:11945669 original size:197 final size:195
Alignment explanation
Indices: 11945287--11945696 Score: 522
Period size: 197 Copynumber: 2.1 Consensus size: 195
11945277 TTCGACTGGG
* * **
11945287 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAA
* * * * *
11945352 CCGGCAGAGAGGCAGAATGCACAAGTCAGGGATCGACCCGGTCCCCCCTATGTGCTGTCGATCTT
66 CCGCCAGAGAGGCAGAATGCACAAGTCAGGGACCGACCCGATCCCCCCTATGTGCTCTCAATCTT
** * * *
11945417 GTTACTGGTCCTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGATTGGGAATGAACTCCGTAT
131 ACTACTAGTCCTGCTGCCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
11945482 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAT
1 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAA
* ** *
11945547 TCGACCAGAGAGGCAGAAT-CTGTAAG-CTGGCGACC-AGCCCGATCCCCCCCT-TCGTGCTCTC
66 CCG-CCAGAGAGGCAGAATGC-ACAAGTCAGG-GACCGA-CCCGAT-CCCCCCTAT-GTGCTCTC
* *
11945608 AATCTTACTACTAGTCCTGCTGTCGCAACCTTCAGTCCAGTCCGATCTTAGACTGGGAATGAACT
125 AATCTTACTACTAGTCCTGCTGCCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACT
*
11945673 CTGTAT
190 CCGTAT
*
11945679 GCTTAGACATCGAATGAA
1 GCTTAGACATGGAATGAA
11945697 ATGCTTAAGC
Statistics
Matches: 185, Mismatches: 24, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
195 66 0.36
196 26 0.14
197 93 0.50
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.22
Consensus pattern (195 bp):
GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAA
CCGCCAGAGAGGCAGAATGCACAAGTCAGGGACCGACCCGATCCCCCCTATGTGCTCTCAATCTT
ACTACTAGTCCTGCTGCCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:11945982 original size:155 final size:155
Alignment explanation
Indices: 11945797--11946096 Score: 510
Period size: 155 Copynumber: 1.9 Consensus size: 155
11945787 CTGCGTGCTA
* * *
11945797 TCGATCTTGCTGCCAAAACCCTAGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATACCT
1 TCGATCCTGCTGCCAAAACCCTAGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTAAACCT
* *
11945862 AAGTCAACCTACGAAACGAGCGTGCGGGCGTTGAGCTGACCGGAGAGGCATAATATGCAAGCCAA
66 AAGTCAACCCACGAAACGAGCGTGCGGGCGTTGAGCTGACCGGAGAGGCATAATACGCAAGCCAA
*
11945927 GGATTGACCCGATCCCCCCTGCATG
131 GGATCGACCCGATCCCCCCTGCATG
*
11945952 TCGATCCTGCTGCCAAAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTAAACCT
1 TCGATCCTGCTGCCAAAACCCTAGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTAAACCT
* *
11946017 AAGTCAACCCATGAAACGAGCGTGCGGGCGTTGAGCTGACCGGAGAGGCATAATACGCAAGCCAG
66 AAGTCAACCCACGAAACGAGCGTGCGGGCGTTGAGCTGACCGGAGAGGCATAATACGCAAGCCAA
*
11946082 GGATCGACCTGATCC
131 GGATCGACCCGATCC
11946097 TCCTCTGCGT
Statistics
Matches: 135, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
155 135 1.00
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (155 bp):
TCGATCCTGCTGCCAAAACCCTAGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTAAACCT
AAGTCAACCCACGAAACGAGCGTGCGGGCGTTGAGCTGACCGGAGAGGCATAATACGCAAGCCAA
GGATCGACCCGATCCCCCCTGCATG
Found at i:11947397 original size:26 final size:26
Alignment explanation
Indices: 11947346--11947398 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11947336 CCGGTCTAAT
**
11947346 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
11947372 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
11947398 C
1 C
11947399 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:11947729 original size:26 final size:26
Alignment explanation
Indices: 11947688--11947740 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11947678 TCGATCCTAT
11947688 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11947714 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
11947740 C
1 C
11947741 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11947791 original size:342 final size:343
Alignment explanation
Indices: 11947043--11947803 Score: 939
Period size: 343 Copynumber: 2.2 Consensus size: 343
11947033 GACTGGGAAA
* * * * *
11947043 GAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAGTCGACCG-A-AGAGG
1 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTAAGCCGA--GTAGAGAGG
* * * *
11947106 CAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTCTACGTGCTGCCGGTCCTACTACCACAAC
64 CAGAATGCGCAAGTCAGGGATCAGCCCGATCCCCCTCAACGTGCTGCCAGTCCCACTACCACAAC
* *
11947171 CCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACCAAACGG
129 CCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACCAAACGG
* * ** * * *
11947236 GCGTGTGGGCACCCAGCATATAGGAGAGGCAGAATGCGTAAGCCGAGGATCAACCTGGTCCCTTC
194 GCGTGCGGGCACACAGCATATAGGAGAGGCAGAATGCACAAGCAGAGGATCAACCCGGTCCCTCC
* * * *
11947301 TGAGTGCTGTCGATCCTGCTTCCGCAACCCTTGATCCGGTCTAATCTTAGACTGAGAATGAACTC
259 TGAGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGATCTAATCTTAGACTGAGAATGAACTC
* *
11947366 TGTATGCTTAGACTGGGGAT
324 CGTATGCTTAGACTAGGGAT
* * *
11947386 GAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTAAGCCGA-TCGGAGAGGC
1 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTAAGCCGAGT-AGAGAGGC
* * * * * *
11947450 ATAATGCGTAAGTCAGGGATC-GACCCGGTCCCCCTCAACGTGCTGTCAGTCCCGCTGCCACAAC
65 AGAATGCGCAAGTCAGGGATCAG-CCCGATCCCCCTCAACGTGCTGCCAGTCCCACTACCACAAC
* *
11947514 CCTCGATCCGGA-TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACG
129 CCTCGATCC-GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACCAAACG
* * **
11947578 GGCGTGCGGGCACTAC-GCCA-GTCGGAGAGGCAGAATGCACAAGTCAG-GGATCGGCCCGGTCC
193 GGCGTGCGGGCAC-ACAG-CATATAGGAGAGGCAGAATGCACAAG-CAGAGGATCAACCCGGTCC
* * * *
11947640 C-CCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTTCGATCCT-ATCTTAGACTGGGAATG
255 CTCCTGAGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGAT-CTAATCTTAGACTGAGAATG
11947703 AACTCCGTATGCTTAGACTAGGGAT
319 AACTCCGTATGCTTAGACTAGGGAT
* * * *
11947728 GAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTGCGGACGCTCAGGCGAGTAGAGAGGCA
1 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTAAGCCGAGTAGAGAGGCA
*
11947793 GGATGCGCAAG
66 GAATGCGCAAG
11947804 CCGAGGATCG
Statistics
Matches: 355, Mismatches: 53, Indels: 21
0.83 0.12 0.05
Matches are distributed among these distances:
342 138 0.39
343 210 0.59
344 7 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (343 bp):
GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTAAGCCGAGTAGAGAGGCA
GAATGCGCAAGTCAGGGATCAGCCCGATCCCCCTCAACGTGCTGCCAGTCCCACTACCACAACCC
TCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACCAAACGGGC
GTGCGGGCACACAGCATATAGGAGAGGCAGAATGCACAAGCAGAGGATCAACCCGGTCCCTCCTG
AGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGATCTAATCTTAGACTGAGAATGAACTCCG
TATGCTTAGACTAGGGAT
Found at i:11948798 original size:158 final size:157
Alignment explanation
Indices: 11948435--11948885 Score: 507
Period size: 158 Copynumber: 2.8 Consensus size: 157
11948425 AACTCCATAT
* * *
11948435 GCTTAGACATGGAATGAATTTCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
11948500 TC-AGTCGGAGAGGCAGAATACGCAAGCCGGGGATCGGCCC-AGTCCCCCTCTACGTGCTGCCGG
66 CCGA-TCGGAGAGG-AGAATGCGTAAGCCGGGGATCGACCCGA-TCCCCCT-TGCGTGCTGTCGA
* * * *
11948563 TCCCGCTGCCACAATCCTTGGTCTAGCTAGG
127 TCCTGCTACCACAACCCTTGGTCTAGCTAGA
* * * *
11948594 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
11948659 CCGATCGGAGAGGTAAAATGCGTAAGTCGGGGATCGACCCGATCCCCCTTGCGTACTGTCGATCC
66 CCGATCGGAGAGG-AGAATGCGTAAGCCGGGGATCGACCCGATCCCCCTTGCGTGCTGTCGATCC
* *
11948724 TGCTACCGCAACCCTTGGTCTGGTCT-GA
130 TGCTACCACAACCCTTGGTCTAG-CTAGA
* * *
11948752 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
11948816 GCCGGTCGGAGAGCGAGAATGCATAAACCGGTGATC-AGCCCGATCCCCCCTGCGTGCTGTCGAT
65 GCCGATCGGAGAG-GAGAATGCGTAAGCCGGGGATCGA-CCCGATCCCCCTTGCGTGCTGTCGAT
11948880 CCTGCT
128 CCTGCT
11948886 GCTGGTCCTA
Statistics
Matches: 247, Mismatches: 39, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
157 2 0.01
158 144 0.58
159 99 0.40
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGATCGGAGAGGAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCTTGCGTGCTGTCGATCCT
GCTACCACAACCCTTGGTCTAGCTAGA
Found at i:11948961 original size:26 final size:26
Alignment explanation
Indices: 11948923--11948972 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
11948913 TCGATCTGAT
*
11948923 CTTAGACCGGGAATGAACTCCGTACG
1 CTTAGACAGGGAATGAACTCCGTACG
*
11948949 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACAGGGAATGAACTCCGTA
11948973 TGCCTAAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.22
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTACG
Found at i:11949363 original size:159 final size:158
Alignment explanation
Indices: 11948948--11949389 Score: 464
Period size: 159 Copynumber: 2.8 Consensus size: 158
11948938 AACTCCGTAC
* ** *
11948948 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACAAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAATGAGCGTGCGGGCGCTCAG
* * * *
11949013 CCAGCCGGAGAGGCAGAATACGCAAGCCGGGGACTAGCCCGATCCCTC-CTGCGTGCTGTCGATC
66 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGA-TCGGCCGGTCCCTCTCTGCGTGCTGTCGATC
* *
11949077 ATGCAGTCGCAACCTGCAGTCCGGTCCGA
130 ATGCAGCCACAACCTGCAGTCCGGTCCGA
* * * * * *
11949106 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGAGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAACCATGAAATGAGCGTGCGGGCGCTCA
* * * *
11949170 GCCAGTCGGAGAGGCATAATGCGCATGCCGGGGATCGGTCCGGTCCCCCTCTGCGTGCTGTC-AG
65 GCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG-CCGGTCCCTCTCTGCGTGCTGTCGA-
* * * *
11949234 TCCTGCTGCCACAACCCT-CAGTCCGG-CTGGG
128 TCATGCAGCCACAA-CCTGCAGTCCGGTC-CGA
* * * * * *
11949265 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAATCCATGAAATGGGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAATGAGCGTGCGGGCGCTCAG
* * * * *
11949330 TCGGCCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGGTGCCTCT-TGCGTGCTGTC
66 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC-CGGTCCCTCTCTGCGTGCTGTC
11949390 CATCCTGTTA
Statistics
Matches: 232, Mismatches: 44, Indels: 16
0.79 0.15 0.05
Matches are distributed among these distances:
157 3 0.01
158 104 0.45
159 121 0.52
160 4 0.02
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAATGAGCGTGCGGGCGCTCAG
CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGGTCCCTCTCTGCGTGCTGTCGATCA
TGCAGCCACAACCTGCAGTCCGGTCCGA
Found at i:11949385 original size:513 final size:513
Alignment explanation
Indices: 11948409--11949396 Score: 1131
Period size: 513 Copynumber: 1.9 Consensus size: 513
11948399 TGGTTCAAAC
* * * * *
11948409 TCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAATTTCGTATGCCTAAGCCAACC
1 TCTTAGACCGGGAATGAACTCCATACGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAAC
* * * *
11948474 CACGAAACGAACGTGCGGGCGCTCAGTCAGTCGGAGAGGCAGAATACGCAAGCCGGGGATCGGCC
66 CACGAAACGAACGTGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATACGCAAGCCGGGGATCAGCC
* * * * *
11948539 CAGTCCCCCTCTACGTGCTGCCGGTCCCGCTGCCACAATCCTTGGTCTAGCTAGGGCTTAGACAT
131 CAGTCCCCCTCTACGTGCTGCCGATCACGCAGCCACAATCCTTGGTCCAGCTAGAGCTTAGACAT
* *
11948604 GGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAGCCGATCGGAG
196 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGATCGGAG
* * * *
11948669 AGGTAAAATGCGTAAGTCGGGGATCGACCCGATCCCCCTTGCGTACTGTCGATCCTGCTACCGCA
261 AGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCCCTTGCGTACTGTCGATCCTGCTACCACA
** * * * * *
11948734 ACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
326 ACCCTCAGTCCGGTCTGAGCTTAGACTGGGAATGAACTCCCTATACCTAAGCCAACCCACGAAAC
* * * *
11948799 GAGCGTGCGGGCACTCAGCCGGTCGGAGAGCGAGAATGCATAAACCGGTGATCAGCCCGATCCCC
391 GAGCATGCGGGCACTCAGCCGGCCGAAGAGCGAGAATGCATAAACCGGGGATCAGCCCGATCCCC
*
11948864 CCTGCGTGCTGTCGATCCTGCTGCTGGTCCTACTGTCGCAACCCTTGGTTCGATCTGA
456 CCTGCGTGCTGTCCATCCTGCTGCTGGTCCTACTGTCGCAACCCTTGGTTCGATCTGA
*
11948922 TCTTAGACCGGGAATGAACTCCGTACGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAAC
1 TCTTAGACCGGGAATGAACTCCATACGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAAC
11948987 CACGAAAC-AAGCGTGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATACGCAAGCCGGGGA-CTAG
66 CACGAAACGAA-CGTGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATACGCAAGCCGGGGATC-AG
* * * * * * * * *
11949050 CCC-GATCCCTC-CTGCGTGCTGTCGATCATGCAGTCGCAA-CC-TGCAGTCC-GGTCCGATCTT
129 CCCAG-TCCCCCTCTACGTGCTGCCGATCACGCAGCCACAATCCTTG--GTCCAGCT-AGAGCTT
* * * *
11949110 AGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGC-GAGCGCTGAGCC
190 AGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAG-GCGCTCAGCC
* * ** * *
11949173 -AGTCGGAGAGGCATAATGCGCATGCCGGGGATCGGTCCGGTCCCCCTCTGCGTGCTGTC-AGTC
253 GA-TCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCCCT-TGCGTACTGTCGA-TC
* *
11949236 CTGCTGCCACAACCCTCAGTCCGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATACCTAAGC
315 CTGCTACCACAACCCTCAGTCCGGTCT-GAGCTTAGAC-TGGGAATGAACTCCCTATACCTAAGC
* * * * ** * * *
11949299 CAATCCATGAAATGGGCATGCGGGTGCTCAGTCGGCCGAAGAG-GCAGAATGCGTAAGCCGGGGA
378 CAACCCACGAAACGAGCATGCGGGCACTCAGCCGGCCGAAGAGCG-AGAATGCATAAACCGGGGA
* * * * * *
11949363 TCGGCTCGGTGCCTCTTGCGTGCTGTCCATCCTG
442 TCAGCCCGATCCCCCCTGCGTGCTGTCCATCCTG
11949397 TTATCGCAAT
Statistics
Matches: 392, Mismatches: 69, Indels: 28
0.80 0.14 0.06
Matches are distributed among these distances:
510 2 0.01
511 7 0.02
512 125 0.32
513 257 0.66
514 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (513 bp):
TCTTAGACCGGGAATGAACTCCATACGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAAC
CACGAAACGAACGTGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATACGCAAGCCGGGGATCAGCC
CAGTCCCCCTCTACGTGCTGCCGATCACGCAGCCACAATCCTTGGTCCAGCTAGAGCTTAGACAT
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGATCGGAG
AGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCCCTTGCGTACTGTCGATCCTGCTACCACA
ACCCTCAGTCCGGTCTGAGCTTAGACTGGGAATGAACTCCCTATACCTAAGCCAACCCACGAAAC
GAGCATGCGGGCACTCAGCCGGCCGAAGAGCGAGAATGCATAAACCGGGGATCAGCCCGATCCCC
CCTGCGTGCTGTCCATCCTGCTGCTGGTCCTACTGTCGCAACCCTTGGTTCGATCTGA
Found at i:11949454 original size:26 final size:26
Alignment explanation
Indices: 11949425--11949476 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11949415 CGGTCTGATA
*
11949425 TTAGATTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
* *
11949451 TTAGACTGGGGATGATCTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
11949477 CTAAGTCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:11950186 original size:26 final size:26
Alignment explanation
Indices: 11950147--11950198 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11950137 TGGCTCAAAA
11950147 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
*
11950173 TCTTAGACAT-GGAATGAACTTCGTAT
1 TCTTAGAC-TGGGAATGAACTCCGTAT
11950199 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:11950567 original size:159 final size:159
Alignment explanation
Indices: 11950174--11950603 Score: 447
Period size: 159 Copynumber: 2.7 Consensus size: 159
11950164 ACTCCGTATT
*
11950174 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCAG-TCAG
1 CTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-AGCTCAG
* * *
11950238 CCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTGTCGATC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTGCCGATC
* *** * * * *
11950302 CTACTAATGTAACCCTCAGTCTGGTCCGAT
130 CCACTAACACAACCCTCAGTCCGCTCAGAG
* * * * * *
11950332 CTTAGAC-TGGGAATGAACTACGTATGCATAAGTCAACCCACGGAACGAGCGTGCAGGCGCTGAG
1 CTTAGACAT-GGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
* * * * * *
11950396 CTGACCGAAGAGGCATAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTACGTGCTGCC-AGT
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTGCCGA-T
* * ** *
11950460 CCCGCTACCACAACCCTTGGTCCGACT-AGGG
129 CCCACTAACACAACCCTCAGTCCG-CTCAGAG
* * * * * *
11950491 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCATCCCACGAAACGGGCGTACGGGTGCTCAGC
1 CTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAGC
* * *
11950556 CGACTGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCT
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCT
11950604 ACATGCTGTC
Statistics
Matches: 217, Mismatches: 49, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
157 2 0.01
158 95 0.44
159 118 0.54
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTGCCGATCC
CACTAACACAACCCTCAGTCCGCTCAGAG
Found at i:11951120 original size:511 final size:510
Alignment explanation
Indices: 11950146--11951283 Score: 1386
Period size: 511 Copynumber: 2.2 Consensus size: 510
11950136 GTGGCTCAAA
* ** *
11950146 ATCTTAGACTGGGAATGAACTCCGTATTCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAAAAAACTCCGTATGCCTAAGCCAAC
* * * * * **
11950211 CCACGAAACGAGCGTGCGGGCAGTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGC
66 CCAAGAAACGAGAGTCCGGGCA-TCAACCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAAC
* * * * * * * *
11950276 CCGATCCCCCCTGCGTGCTGTCGATCCTACTAATGTAACCCTCAGTCTGGTCCGATCTTAGACTG
130 CAGATCCCCCCTACATGCTCTCAATCCTA-TAATGCAACCCTCAGTCTAGTCCGATCATAGACTG
* *
11950341 GGAATGAACTACGTATGCATAAGTCAACCCACGGAACGAGCGTGCAGGCGCTGAGCTGACCGAAG
194 GGAATGAACTACATATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGCTGACCGAAG
* *
11950406 AGGCATAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTACGTGCTGCCAGTCCCGCTACCAC
259 AGGCATAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTACATGCTGCCAGTCCCACTACCAC
* * *
11950471 AACCCTTGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCATCCCACGAAA
324 AACCCTCGGTCCGACCAGGGCTTAGACATGGAATCAACTCCCTATGCCTAAGCCATCCCACGAAA
*
11950536 CGGGCGTACGGGTGCTCAGCCGACTGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCC
389 CGGGCGTACGGGTGCTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCC
*
11950601 CCTACATGCTGTCGATCCTGCTACGGGTCCTACTGTCGCAACCCTCAATTTGATCCG
454 CCTACATGCTGTCGATCCTACTACGGGTCCTACTGTCGCAACCCTCAATTTGATCCG
11950658 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAAAAAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAAAAAACTCCGTATGCCTAAGCCAAC
* ** *
11950723 CCAAGAAACGAGAGTACCGATGC-TCAACCGGGCGGAGAGGCAGAATGTGCAAGCCGGGGATCAA
66 CCAAGAAACGAGAGT-CCG-GGCATCAACCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAA
**
11950787 CCTAG-TCCCCCCTACATGCTCTCAAT-CT-TGTTGCACAACCCTC-GATAC-AGTCCGATCATA
129 CC-AGATCCCCCCTACATGCTCTCAATCCTATAATG--CAACCCTCAG-T-CTAGTCCGATCATA
* * * * * *
11950847 GACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAGCTGGC
189 GACTGGGAATGAACTACATATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGCTGAC
* *
11950912 CGGAGAGGCATAATGCACAAGCCGGGGATCGACCCGGA-CCCCCTCTACATGCTGCCAGTCCCAC
254 CGAAGAGGCATAATGCACAAGCCAGGGATCGACCC-GATCCCCCTCTACATGCTGCCAGTCCCAC
* * *
11950976 TGCCCCAACCCTCGGTCCGGCCAGGGCTTAGACATGGAATCAACTCCCTATGCCTAAGCCATCCC
318 TACCACAACCCTCGGTCCGACCAGGGCTTAGACATGGAATCAACTCCCTATGCCTAAGCCATCCC
* * * *
11951041 ACGAAACGGGTGTACGGGAT-CTCAGCCG-GTGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCC
383 ACGAAACGGGCGTACGGG-TGCTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCC
* * * *
11951104 CGGTCCCCCTTACATGCTGTCGATCCTACTA------CTA------CAACCCTCGATCTGGTCTG
447 CGGTCCCCC-TACATGCTGTCGATCCTACTACGGGTCCTACTGTCGCAACCCTCAATTTGATCCG
* * * ** *
11951157 ATCTTAGACTTGGAATGAACTCTGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAAAAAACTCCGTATGCCTAAGCCAA
* * * * * * *
11951221 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCA-AGATGCGTAAGCCGGGGATC
65 CCCAAGAAACGAGAGTCCGGGC-ATCAACCGACCGGAGAGGCAGA-ATGCGCAAGCCGGGGATC
11951284 GAAAGGGTGG
Statistics
Matches: 543, Mismatches: 69, Indels: 41
0.83 0.11 0.06
Matches are distributed among these distances:
497 2 0.00
498 4 0.01
499 116 0.21
505 3 0.01
509 3 0.01
510 41 0.08
511 238 0.44
512 131 0.24
513 3 0.01
514 2 0.00
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (510 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAAAAAACTCCGTATGCCTAAGCCAAC
CCAAGAAACGAGAGTCCGGGCATCAACCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAACC
AGATCCCCCCTACATGCTCTCAATCCTATAATGCAACCCTCAGTCTAGTCCGATCATAGACTGGG
AATGAACTACATATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGCTGACCGAAGAG
GCATAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTACATGCTGCCAGTCCCACTACCACAA
CCCTCGGTCCGACCAGGGCTTAGACATGGAATCAACTCCCTATGCCTAAGCCATCCCACGAAACG
GGCGTACGGGTGCTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC
TACATGCTGTCGATCCTACTACGGGTCCTACTGTCGCAACCCTCAATTTGATCCG
Found at i:11951185 original size:157 final size:156
Alignment explanation
Indices: 11950686--11951185 Score: 450
Period size: 157 Copynumber: 3.2 Consensus size: 156
11950676 ACTCCGTATG
** * * *
11950686 CTTAGACATGGAAAAAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGAGTAC-CGATGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTACGGGATGCTCAG
* * ** * * *
11950750 CCGGGCGGAGAGGCAGAATGTGCAAGCCGGGGATCAACCTAGTCCCCCCTACATGCTCTCAATCT
66 CC-GGCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTACATGCTGTCAATCC
** * *
11950815 TGTTGCACAACCCTCGATACAGTCCGAT
130 TACTGCACAACCCTCGAT-CGGTCAGAT
* * * * * * *
11950843 CATAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGG-TGCTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTACGGGATGCTCA
* * * * * *
11950906 GCTGGCCGGAGAGGCATAATGCACAAGCCGGGGATCGACCCGGACCCCCTCTACATGCTGCCAGT
65 GCCGG-CGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCT-TACATGCTGTCAAT
* * * * **
11950971 CCCACTGCCCCAACCCTCGGTCCGGCCAGGG
128 CCTACTG-CACAACCCTCGAT-CGGTCAGAT
* * * * *
11951002 CTTAGACATGGAATCAACTCCCTATGCCTAAGCCATCCCACGAAACGGGTGTACGGGAT-CTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTACGGGATGCTCAG
* * * * *
11951066 CCGGTGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCTTACATGCTGTCGATCCT
66 CCGGCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTACATGCTGTCAATCCT
* *
11951131 ACTACTACAACCCTCGATCTGGTCTGAT
131 ACTGC-ACAACCCTCGATC-GGTCAGAT
* *
11951159 CTTAGACTTGGAATGAACTCTGTATGC
1 CTTAGACATGGAATGAACTCCGTATGC
11951186 TTAGACTGGG
Statistics
Matches: 265, Mismatches: 69, Indels: 18
0.75 0.20 0.05
Matches are distributed among these distances:
156 5 0.02
157 138 0.52
158 52 0.20
159 68 0.26
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTACGGGATGCTCAG
CCGGCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTACATGCTGTCAATCCT
ACTGCACAACCCTCGATCGGTCAGAT
Found at i:11951188 original size:26 final size:26
Alignment explanation
Indices: 11951159--11951211 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11951149 CTGGTCTGAT
* *
11951159 CTTAGACTTGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11951185 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11951211 C
1 C
11951212 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11952201 original size:159 final size:158
Alignment explanation
Indices: 11951930--11952401 Score: 524
Period size: 159 Copynumber: 3.0 Consensus size: 158
11951920 TGAATTCCGC
* * * * *
11951930 ATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTC-AGAGAGGCAAAATGCGC
1 ATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGA-AGAGGCATAACGCGC
* * *
11951994 AAGCTGGGGATCGACCCGGTCCCCCCCTGCGTGCTATCGATCCTGCTGCTGCAACCCTCGGTCTG
65 AAGCCGGGGATCGACCCGGT-CCCCCCTGCGTGCTATCGATCCAGCTGCTACAACCCTCGGTCTG
* *
11952059 ATCTGTTCTTAGACTGGGAATGAACTCTAT
129 ATCTGATCTTAGACTGGGAATGAACTCCAT
* * * * * * *
11952089 ATGCATAAGTCAACCCATGAAACGAGCGTGCTGGCGTTGAGCTGGCCGAAGAGGCATAACGTGCA
1 ATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGAAGAGGCATAACGCGCA
** * * * * *
11952154 AGCCGGGGATC-AGCCCGGTCCCTTTCTACGTGCTGTCGGTCTC-GCTGCCACAACCCTCGATCT
66 AGCCGGGGATCGA-CCCGGTCCC-CCCTGCGTGCTATCGATC-CAGCTGCTACAACCCTCGGTCT
** *
11952217 GA-CTAGGGCTTAGACAT-GGAATGAACTCCCT
128 GATCT-GATCTTAGAC-TGGGAATGAACTCCAT
* * * *
11952248 ATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGAAGAGGCATAAGGCGTA
1 ATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGAAGAGGCATAACGCGCA
* * *
11952313 AGCCGGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCCAGCTG-TCACAACCCTCGGTCCGA
66 AGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCCAGCTGCT-ACAACCCTCGGTCTGA
11952377 TCTGATCTTAGACTGGGAATGAACT
130 TCTGATCTTAGACTGGGAATGAACT
11952402 TCGTATGCTT
Statistics
Matches: 254, Mismatches: 48, Indels: 23
0.78 0.15 0.07
Matches are distributed among these distances:
157 2 0.01
158 54 0.21
159 194 0.76
160 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
ATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGAAGAGGCATAACGCGCA
AGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCCAGCTGCTACAACCCTCGGTCTGAT
CTGATCTTAGACTGGGAATGAACTCCAT
Found at i:11952419 original size:26 final size:26
Alignment explanation
Indices: 11952383--11952435 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11952373 CCGATCTGAT
11952383 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* *
11952409 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
11952435 C
1 C
11952436 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:11953275 original size:26 final size:26
Alignment explanation
Indices: 11953239--11953291 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11953229 CCAGTCCGAT
*
11953239 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11953265 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11953291 C
1 C
11953292 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11954205 original size:185 final size:183
Alignment explanation
Indices: 11953989--11954358 Score: 476
Period size: 185 Copynumber: 2.0 Consensus size: 183
11953979 TCCGATTGGG
*
11953989 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGC-GG-ATGCTT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCA--CTC
** * * *
11954052 AGCCGGCCGGAGAGGCAGAATGCGTAAGCTGAGGATC-GGCCTGGTCCCCCCCTGCGTGCTGCCG
64 AGCCAACCGGAGAGGCAG-ATGCGCAAGCCGAGGATCAGGCC-AGT-CCCCCCTGCGTGCTGCCG
* * * *
11954116 ATCCTGCTGCCGTAACCCTCAGTCCGGTCAAATCATAGACTGGGAATGAACTCTGTAT
126 ATCCTGCTACCGCAACCCTCAGTCCAGTCAAATCATAGACTGGGAATGAACTCCGTAT
** * *
11954174 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCGG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCACTCAG
* * * *
11954239 CCAACCGGAGAGGCAGATGTGCAAGCCGGGGATCAGTCCAGTCCCCCCTGCGTGCTGTCGATCCT
66 CCAACCGGAGAGGCAGATGCGCAAGCCGAGGATCAGGCCAGTCCCCCCTGCGTGCTGCCGATCCT
* ** *
11954304 GCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
131 GCTACCGCAACCCTCAGTCCAGTCAAATCATAGACTGGGAATGAACTCCGTAT
11954357 GC
1 GC
11954359 CTAAGTCAAC
Statistics
Matches: 160, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
183 69 0.43
184 16 0.10
185 72 0.45
186 2 0.01
187 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCACTCAG
CCAACCGGAGAGGCAGATGCGCAAGCCGAGGATCAGGCCAGTCCCCCCTGCGTGCTGCCGATCCT
GCTACCGCAACCCTCAGTCCAGTCAAATCATAGACTGGGAATGAACTCCGTAT
Found at i:11954520 original size:159 final size:156
Alignment explanation
Indices: 11954174--11954675 Score: 519
Period size: 159 Copynumber: 3.2 Consensus size: 156
11954164 AACTCTGTAT
*
11954174 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCG-
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACT-GA
* * * * * * *
11954238 GCCAACCGGAGAGGCAGATGTGCAAGCCGGGGATCAGTCCAGTCCCCCCTGCGTGCTGTCGATCC
65 GCCGACCGGAGAGGCAAATGCGCAAG-CGGGGATTAGCCCGGTCCCCCCTGCGTGCTGCCGATCC
** * *
11954303 TGCTACCGCAACCCTCGGTCCAGTCTGA
129 CACTACCACAACCCTCGGTCCAGGCTGA
* * *
11954331 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGA
* * * *
11954395 GCCGGCCGAAGAGGCATAATGCGCAAGACGGGGATTTGCCCGGTCCCCCTCTGCGTGCTGCCGGT
65 GCCGACCGGAGAGGCA-AATGCGCAAG-CGGGGATTAGCCCGGTCCCCC-CTGCGTGCTGCCGAT
* * *
11954460 CCCATTGCCACAACCCTCGGTCC-GGCTGGG
127 CCCACTACCACAACCCTCGGTCCAGGCT-GA
* * * * ** *
11954490 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCATGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAG
* * * *
11954555 CCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATTGGCTCGGTCACCCCTGCGTGCTGCCGATCC
66 CCGACCGGAGAGGCA-AATGCGCAAGC-GGGGATTAGCCCGGTCCCCCCTGCGTGCTGCCGATCC
** * * *
11954620 TGCTACCACAACCCTCAGTCC-GATCCGA
129 CACTACCACAACCCTCGGTCCAG-GCTGA
*
11954648 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
11954676 TTAGACTGGG
Statistics
Matches: 285, Mismatches: 51, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
156 2 0.01
157 70 0.25
158 87 0.31
159 125 0.44
160 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGAG
CCGACCGGAGAGGCAAATGCGCAAGCGGGGATTAGCCCGGTCCCCCCTGCGTGCTGCCGATCCCA
CTACCACAACCCTCGGTCCAGGCTGA
Found at i:11954678 original size:26 final size:26
Alignment explanation
Indices: 11954649--11954701 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11954639 CCGATCCGAT
11954649 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11954675 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11954701 C
1 C
11954702 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11961595 original size:159 final size:157
Alignment explanation
Indices: 11961184--11961608 Score: 455
Period size: 159 Copynumber: 2.7 Consensus size: 157
11961174 CCTCATGCTT
* * ** *
11961184 AGACATGGAATGAACTTCGTATCCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGTTGA
1 AGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * ** *
11961249 CCGGAGAGGTAGAATTCGCAAGCTGGGGATCGACCTGGTCCCCCCTGTGTGCTGTCGATCCTGCT
66 CCGGAGAGGCAGAATGCGCAAGC-GAGGATCGACTTGGTCCCCCCTAAGTGCTGTCGATCCCGCT
* * *
11961314 ACCGCAACCCTCAATCCGGTCTGATCTT
130 ACCGCAACCCTCAATCCAGTCTGAGCTC
* * * *
11961342 AGAC-TAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTGAACCG
1 AGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * *
11961406 GCCGGAGAGGCATAATGCACAAGCCAAGGATCGGCTTGGTCCCCCTCTAAGTGCTGTC-AGTCCC
65 GCCGGAGAGGCAGAATGCGCAAG-CGAGGATCGACTTGGTCCCCC-CTAAGTGCTGTCGA-TCCC
* * * *
11961470 GCTGCCGCAACCGTCAGTCCAG-CTAGGGCTC
127 GCTACCGCAACCCTCAATCCAGTCT-GAGCTC
*
11961501 AGACATGGAATGAAC-TCGCTATGCCTAAGCCAACTCACGAAAC-AGGCGTGCGGGCGCTCAGCC
1 AGACATGGAATGAACTTCG-TATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCAGCC
* * *
11961564 GGCCGGAAAGGCAGAATGCGTAAGTCGAGGATCGACTCGGTCCCC
64 GGCCGGAGAGGCAGAATGCGCAAG-CGAGGATCGACTTGGTCCCC
11961609 TCTGCGTGCT
Statistics
Matches: 219, Mismatches: 40, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
157 1 0.00
158 95 0.43
159 122 0.56
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
AGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
CCGGAGAGGCAGAATGCGCAAGCGAGGATCGACTTGGTCCCCCCTAAGTGCTGTCGATCCCGCTA
CCGCAACCCTCAATCCAGTCTGAGCTC
Found at i:11961707 original size:26 final size:26
Alignment explanation
Indices: 11961656--11961708 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11961646 CCAGTCTGAT
* *
11961656 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11961682 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11961708 C
1 C
11961709 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11962405 original size:26 final size:26
Alignment explanation
Indices: 11962367--11962419 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11962357 GGCTCAAAAC
11962367 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
11962393 CTTAGACAT-GGAATGAACTCCTTATG
1 CTTAGA-ATGGGAATGAACTCCGTATG
11962419 C
1 C
11962420 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:11963388 original size:158 final size:158
Alignment explanation
Indices: 11963095--11963522 Score: 452
Period size: 158 Copynumber: 2.7 Consensus size: 158
11963085 CTCTGTACGG
* * * ** * *
11963095 TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACACACGAAACAAGCGTGCGGGCGCTCAGCT
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGA-CGTGCGGGCACTCAGTT
* * ** ** * * *
11963160 GGCCGAAGAGGCAGAATGCGCAAGCCAAGGATCAACACGATCCCCC-CTGTGTGCTGTCGATCCT
65 GACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCACGATCCCCCTCCGCGTGCTGCCGATCCT
** * *
11963224 GTTGCCACAACCCTTGGTTCAATC-CGATC
130 GTTGCCACAACCCTCAG-TCAAGCTCGAGC
* * * *
11963253 TTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGACCGTGTGGGCACTGAGT
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGA-CGTGCGGGCACTCAGT
* *
11963317 TGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCCGCGTGCTGCCGATCC
64 TGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCACGATCCCCCTCCGCGTGCTGCCGATCC
** *
11963382 TG-TGCCACAACCCTCAGTCTGGCTGGAGC
129 TGTTGCCACAACCCTCAGTCAAGCTCGAGC
* * *
11963411 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGATGTGCGGGCACTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAT-GACGTGCGGGCACTCAGTT
* * *
11963476 GATCGGAGAGGTAGAATGCGAAAGCCGGGGATCGGCTA-GATCCCCCT
65 GACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC-ACGATCCCCCT
11963523 GCATGCTGTC
Statistics
Matches: 222, Mismatches: 42, Indels: 12
0.80 0.15 0.04
Matches are distributed among these distances:
157 4 0.02
158 199 0.90
159 19 0.09
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGACGTGCGGGCACTCAGTTG
ACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCACGATCCCCCTCCGCGTGCTGCCGATCCTG
TTGCCACAACCCTCAGTCAAGCTCGAGC
Found at i:11964329 original size:26 final size:26
Alignment explanation
Indices: 11964291--11964342 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11964281 GGCTCAAAAC
11964291 CTTAGAATGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
*
11964317 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGA-ATGGGAATGAACTCCATATG
11964343 GCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:11964683 original size:26 final size:26
Alignment explanation
Indices: 11964645--11964694 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
11964635 CCAATCTGAT
*
11964645 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11964671 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
11964695 CGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11965018 original size:159 final size:158
Alignment explanation
Indices: 11964670--11965168 Score: 528
Period size: 159 Copynumber: 3.1 Consensus size: 158
11964660 GACTCCGTAT
*
11964670 GCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCGTGCGTGCAGGTGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG-GCA----C
* * *
11964735 TCAGCCGGCCGAAGAGGCAGAATGCACAAGCCGAGGA-CTGGCCTGGT-CCCCTCTTCGTGCTGT
61 TCAGCCAGCCGAAGAGGCAGAATGCACAAGCCGGGGATC-GGCCTAGTCCCCCTCTTCGTGCTGT
* *** * * * *
11964798 CGATCCTACTATTGCAACCCTCAGTCTGGTTTGA
125 CGATCCTGCTGCCGCAACCCTCGGTCCGGCTGGA
* * * *
11964832 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGCACTCA
* * * *
11964896 GCCAGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCTAGTCCCCCTCTGCGTGCTGTCGAT
64 GCCAGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCTAGTCCCCCTCTTCGTGCTGTCGAT
* * * *
11964961 CCCGCTGCCACAACCCTTGGTCCGGCTGGG
129 CCTGCTGCCGCAACCCTCGGTCCGGCTGGA
* * * *
11964991 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGTCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG-CACTCAG
* * *
11965056 -CAGGCCGAAGAGGTAGAATGCACAAGCCGGGGATCGGCC-CGATCCCCC-CTTCGTGCTATCGA
65 CCA-GCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCTAG-TCCCCCTCTTCGTGCTGTCGA
*
11965118 TCCTGCTGCCGCAACCCTCGGTCCGG-TCCGA
128 TCCTGCTGCCGCAACCCTCGGTCCGGCT-GGA
*
11965149 TCTTAGAC-TGGGAATGAACT
1 GCTTAGACAT-GGAATGAACT
11965169 TCATATTCTT
Statistics
Matches: 282, Mismatches: 45, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
157 2 0.01
158 97 0.34
159 128 0.45
160 1 0.00
161 1 0.00
162 52 0.18
163 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCACTCAGC
CAGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCTAGTCCCCCTCTTCGTGCTGTCGATCC
TGCTGCCGCAACCCTCGGTCCGGCTGGA
Found at i:11966177 original size:26 final size:26
Alignment explanation
Indices: 11966148--11966200 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11966138 CCGATCCGAT
11966148 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
11966174 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11966200 C
1 C
11966201 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11966692 original size:26 final size:26
Alignment explanation
Indices: 11966656--11966707 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
11966646 TCTGGTTCAA
11966656 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
*
11966682 TCTTAGACTGGGGATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
11966708 GCGTAAGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:11968035 original size:26 final size:26
Alignment explanation
Indices: 11967991--11968043 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11967981 CTGATCCAAT
11967991 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
11968017 CTTAGACTAGGG-ATTAACTTCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
11968043 C
1 C
11968044 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11968409 original size:26 final size:26
Alignment explanation
Indices: 11968359--11968409 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
11968349 CGGTCTGATC
**
11968359 TTAGACTAGGAATGAACTCTGTATGT
1 TTAGACTAGGAATGAACTCCATATGT
11968385 TTAGAC-ATGGAATGAACTCCATATG
1 TTAGACTA-GGAATGAACTCCATATG
11968410 CCTAAGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGT
Found at i:11968887 original size:26 final size:26
Alignment explanation
Indices: 11968858--11968913 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
11968848 CCGATCCAAT
11968858 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
11968884 CTTAGACTGGGGATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11968910 CTTA
1 CTTA
11968914 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.