Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 77 of 402
Found at i:11969175 original size:867 final size:868
Alignment explanation
Indices: 11967487--11969187 Score: 2367
Period size: 867 Copynumber: 2.0 Consensus size: 868
11967477 GGTCTGATCC
* *
11967487 GATCTTAGACTAGGAATGAACTCTGTATGCTTAGACATGGAATGAACTTCGTACGCCTAAGCCAA
1 GATCTTAGACTAGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCATACGCCTAAGCCAA
* * *
11967552 CCCACGAAACGAGCGTCCGGGCGTTCAGCCGATCGGAGAGCTAGAATGCGCAAGCTGGGGACCGA
66 CCCACAAAACGAGCGTCCGGGCGTTCAGCAGATAGGAGAGCTAGAATGCGCAAGCTGGGGACCGA
* * *
11967617 CCCGGTCCCTCCTGCGTGCTGTCGATCCTACCACCGTAACCCTTCGTTCGGTCTGATCTTAGACT
131 CCCGGTCCCTCCTACGTGCTGTCGATCCTACCACCGCAACCCTTCGTTCGGTCCGATCTTAGACT
* * * **
11967682 GAGAATGAACTCTGTATGCCTAATTCAACCCATGAAATGAGCGTTCGGGCACTGAACCGGCTGGA
196 GAGAATGAACTCCGTATGCCTAACTCAACCCATGAAATGAGCGTTCAGGCACTGAACCGGCCAGA
* * * *
11967747 GAGGCGTAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTACATGCTGCTGGTCCTGCTGCCA
261 GAGGCATAATGCACAAGCCAGGGATCAGCCCGGTCCCCATCTACATGCTGCTGGTCCTACTGCCA
** *
11967812 CAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAA
326 CAACCCTCAATCCGGTTGGGGCTTAGACATAGAATGAACTCCCTATGCATAAGCCAACCCACGAA
* * * * *
11967877 ACGGGCATGCGAGCGCTCTGTCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATTAGCTCAGTCC
391 ACGGGCATGCGAGCGCTCTGTCGGTCGGAGAGGCAAAATGCACAAGCCGAGGATCAGCTCAGTCC
* * * * * ** *
11967942 CTCCTACGTGCTGTCGATCCTGCTACCGCATCCCTTGGTCTGATCCAATCTTAGACTGGGAATGA
456 CCCCTACATGATGTCGATCATACTACCGCATCCCTCAGTCCGATCCAATCTTAGACTGGGAATGA
*
11968007 ACTCCGTATGCTTAGACTAGGGATTAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCG
521 ACTCCGTATGCTTAGACTAGGGATTAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCG
** * * * *
11968072 GGCGATCAGCCGGTCGGAGAGGGATAATGCGCAGGCCAGGGATCAGCCCTGTCGCCCTTTGCATG
586 GGCGATCAGCCGGTCACAGAGGCATAATGCGCAAGCCAGGGATCAGCCCCGTCCCCCTTTGCATG
** * *
11968137 CTGTTGAACCCGCTGCCAATCCTGCTACCACAACTCTCGGTCCGGCTGGGGCTTAGACATGGAAT
651 CTGTCAAACCCGCTGCCAATCCTGCAACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAAT
* * ** *
11968202 GAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAGCCAACCAGAGAGGCA
716 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAACGCTCAGCCAACCAGAAAGGCA
* * * * *
11968267 GAATGAGCAAGTCGGGGATCAACCCGATCCCCCCTGCGTGCTGCCGATCCTGCTACTCGTCTTGC
781 AAATGAGCAAGCCCGGGATCAACCCAATCCCCCCTGCGTGCTGCCAATCCTGCTACTCGTCTTGC
11968332 TATCGCAACCCTCGATCCGGTCT
846 TATCGCAACCCTCGATCCGGTCT
* *
11968355 GATCTTAGACTAGGAATGAACTCTGTATGTTTAGACATGGAATGAACTCCATATGCCTAAGCCAA
1 GATCTTAGACTAGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCATACGCCTAAGCCAA
** * *
11968420 CCCACAAAACGAGCGTGTGGGCGCTT-AGCTAG-TAGGAGAGGTAGAATGTGCAAGCTGGGGACC
66 CCCACAAAACGAGCGTCCGGGCG-TTCAGC-AGATAGGAGAGCTAGAATGCGCAAGCTGGGGACC
* * * * ** *
11968483 GGCCCGGTCCC-CTCTACGTGCTGTCGATCTTGCTATTGCAACCCTT-GGTCTGGTCCGATCTTA
129 GACCCGGTCCCTC-CTACGTGCTGTCGATCCTACCACCGCAACCCTTCGTTC-GGTCCGATCTTA
* * *
11968546 GACTGGGAATGAACTCCGTATGCCTAACTCAACCCATGAAATGAGCGTTCAGGCACTGAGCTGGC
192 GACTGAGAATGAACTCCGTATGCCTAACTCAACCCATGAAATGAGCGTTCAGGCACTGAACCGGC
* * * *
11968611 CAGAGAGGCATAATGCATAAG-CTGAGGTTCAGCCCGGTCCCCATCTGCATGCTGCTGGT-CTCA
257 CAGAGAGGCATAATGCACAAGCCAG-GGATCAGCCCGGTCCCCATCTACATGCTGCTGGTCCT-A
* *
11968674 CTGCCACAACCCTCAATCCGGTTGGGG-TTAGACCTAGAATGAACTCCCTATGCATAAGCCAATC
320 CTGCCACAACCCTCAATCCGGTTGGGGCTTAGACATAGAATGAACTCCCTATGCATAAGCCAACC
* * * *
11968738 CATGAAACGGGCGTGCGAGCGCTCTGTCGGTCGGAGAGGCAAAATGCACAAGTCGAGGATCGGCT
385 CACGAAACGGGCATGCGAGCGCTCTGTCGGTCGGAGAGGCAAAATGCACAAGCCGAGGATCAGCT
* * *
11968803 CGGTCCCCCCTGCATGATGTCGATCATACTATCGCATCCCTCAGTCCGATCCAATCTTAGACTGG
450 CAGTCCCCCCTACATGATGTCGATCATACTACCGCATCCCTCAGTCCGATCCAATCTTAGACTGG
* *
11968868 GAATGAACTCCGTATGCTTAGACTGGGGATTAACTCCGTATGCTTAAGTCAACCCATGAAATGAG
515 GAATGAACTCCGTATGCTTAGACTAGGGATTAACTCCGTATGCCTAAGTCAACCCATGAAATGAG
*
11968933 CGTGCGGGCGGTCAGCCGGTCACAGAGGCATAATGCGCAAGCCAGGGATCAGCCCCGTCCCCCTT
580 CGTGCGGGCGATCAGCCGGTCACAGAGGCATAATGCGCAAGCCAGGGATCAGCCCCGTCCCCCTT
* * * *
11968998 TGCGTGCTGTCAAACCCGCTGCTAGTCCTGCAACCACAACCCTCGGTCTGGCTGGGGCTTAGACA
645 TGCATGCTGTCAAACCCGCTGCCAATCCTGCAACCACAACCCTCGGTCCGGCTGGGGCTTAGACA
* * * * **
11969063 TGGAATGAACTCCGTATGCCTATGCCAACCCACGAAACGAGCGTGCGAACGTTCAGCCGA-TTGA
710 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAACGCTCAGCCAACCAG-
* ** *
11969127 AAAGGCAAAATGTGCAAGCCCGGGATCGGCCCAATCCCTCCC-GCGTGCTGTCAATCCTGCT
774 AAAGGCAAAATGAGCAAGCCCGGGATCAACCCAATCCC-CCCTGCGTGCTGCCAATCCTGCT
11969188 GCCACAACCG
Statistics
Matches: 725, Mismatches: 100, Indels: 17
0.86 0.12 0.02
Matches are distributed among these distances:
866 1 0.00
867 428 0.59
868 293 0.40
869 3 0.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (868 bp):
GATCTTAGACTAGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCATACGCCTAAGCCAA
CCCACAAAACGAGCGTCCGGGCGTTCAGCAGATAGGAGAGCTAGAATGCGCAAGCTGGGGACCGA
CCCGGTCCCTCCTACGTGCTGTCGATCCTACCACCGCAACCCTTCGTTCGGTCCGATCTTAGACT
GAGAATGAACTCCGTATGCCTAACTCAACCCATGAAATGAGCGTTCAGGCACTGAACCGGCCAGA
GAGGCATAATGCACAAGCCAGGGATCAGCCCGGTCCCCATCTACATGCTGCTGGTCCTACTGCCA
CAACCCTCAATCCGGTTGGGGCTTAGACATAGAATGAACTCCCTATGCATAAGCCAACCCACGAA
ACGGGCATGCGAGCGCTCTGTCGGTCGGAGAGGCAAAATGCACAAGCCGAGGATCAGCTCAGTCC
CCCCTACATGATGTCGATCATACTACCGCATCCCTCAGTCCGATCCAATCTTAGACTGGGAATGA
ACTCCGTATGCTTAGACTAGGGATTAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCG
GGCGATCAGCCGGTCACAGAGGCATAATGCGCAAGCCAGGGATCAGCCCCGTCCCCCTTTGCATG
CTGTCAAACCCGCTGCCAATCCTGCAACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAAT
GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAACGCTCAGCCAACCAGAAAGGCA
AAATGAGCAAGCCCGGGATCAACCCAATCCCCCCTGCGTGCTGCCAATCCTGCTACTCGTCTTGC
TATCGCAACCCTCGATCCGGTCT
Found at i:11969532 original size:316 final size:323
Alignment explanation
Indices: 11968884--11969548 Score: 744
Period size: 316 Copynumber: 2.1 Consensus size: 323
11968874 ACTCCGTATG
* * * * * * *
11968884 CTTAGACTGGGGATTAACTCCGTATGCTTAAGTCAACCCATGAAATGAGCGTGCGGGCGGTCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGAGCTCAGC
11968949 CGGTCACAGAGGCATAATGCGCAAGCCAGGGATCAGCCCCGTCCCCCTTTGCGTGCTGTCAAACC
66 CGGTCACAGAGGCATAATGCGCAAGCCAGGGATCAGCCCCGT-CCCC--T-CGTGCTGTC-AA-C
* * *
11969014 CGCTGCTAGTCCTGCAACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTA
125 CGCTGCTAGTCCCGCAACCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTA
** * * *
11969079 TGCCTATGCCAACCCACGAAACGAGCGTGCGAACGTTCAGCCGATTGAAAAGGCAAAATGTGCAA
190 TGCCTAAACCAACCCACGAAACGAGCGTGCGAACGCTCAGCCGATCGAAAAGGCAAAATGCGCAA
* * * * * **
11969144 GCCCGGGATCGGCCCAATCCCTCCCGCGTGCTGTCAATCCTGCTGCCACAACCGTTGGTTCGGTC
255 GCCAGGGATCGGCCCAATCCCTCCCGCGTGCTGTCAATCCTACTGCCACAACCCTCGGTCCAATC
*
11969209 TGAT
320 CGAT
* *
11969213 CTTAGACTAGGAATGCACTCCGTATGCATAAGTCAACCCACGAAATGAGCGT-CGGGAGCTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGAGCTCAGC
* *
11969277 CGGTCGA-AGAGGCATAATGCGCAAGCCAGGGATC-GGCCCGAT-CCC-CGT-CTG-C-A-TGCT
66 CGGTC-ACAGAGGCATAATGCGCAAGCCAGGGATCAGCCCCG-TCCCCTCGTGCTGTCAACCGCT
* * ** *
11969334 GTTGGTCCCGCTGCCACAACCCTCGAT-TCGACTGGGGCTTAGACATGGAATGAACTCCCTATGC
129 GCTAGTCCCGCAACCACAACCCTCGGTCT-GACTGGGGCTTAGACATGGAATGAACTCCCTATGC
** * * *
11969398 CTAAACCAACCCACGAAACG-GACGTGCGGGCGCTCAGCC-AGTCGGAGAGGCAGAATGCGCAAG
193 CTAAACCAACCCACGAAACGAG-CGTGCGAACGCTCAGCCGA-TCGAAAAGGCAAAATGCGCAAG
* * * *
11969461 CCAGGGATCGGCCCGATCCC-CCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGGTCCAATC
256 CCAGGGATCGGCCCAATCCCTCCC-GCGTGCTGTCAATCCTACTGCCACAACCCTCGGTCCAATC
11969525 CGAT
320 CGAT
* *
11969529 CTTAGATTGGGAATGAACTC
1 CTTAGACTAGGAATGAACTC
11969549 TGTACGCTTA
Statistics
Matches: 286, Mismatches: 44, Indels: 25
0.81 0.12 0.07
Matches are distributed among these distances:
315 6 0.02
316 175 0.61
318 1 0.00
320 1 0.00
321 3 0.01
322 3 0.01
326 3 0.01
327 5 0.02
328 42 0.15
329 47 0.16
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (323 bp):
CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGAGCTCAGC
CGGTCACAGAGGCATAATGCGCAAGCCAGGGATCAGCCCCGTCCCCTCGTGCTGTCAACCGCTGC
TAGTCCCGCAACCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
AACCAACCCACGAAACGAGCGTGCGAACGCTCAGCCGATCGAAAAGGCAAAATGCGCAAGCCAGG
GATCGGCCCAATCCCTCCCGCGTGCTGTCAATCCTACTGCCACAACCCTCGGTCCAATCCGAT
Found at i:11969533 original size:158 final size:158
Alignment explanation
Indices: 11969055--11969548 Score: 500
Period size: 158 Copynumber: 3.1 Consensus size: 158
11969045 CTGGCTGGGG
* ** *
11969055 CTTAGACAT-GGAATGAACTCCGTATGCCTATGCCAACCCACGAAACGAGCGTGCGAACGTTCAG
1 CTTAGACATAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
11969119 CCGATTGAAAAGGCAAAATGTGCAAGCCCGGGATCGGCCCAATCCCTCCC-GCGTGCTGTCAATC
66 CCG-TCGAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCC-CCCTGCGTGCTGTCGATC
* * * *
11969183 CTGCTGCCACAACCGTTGGTTCGGTCTGAT
129 CTGCTGCCACAACCCTCGGTTCGATCCGAT
* * * * * *
11969213 CTTAGAC-TAGGAATGCACTCCGTATGCATAAGTCAACCCACGAAATGAGCGT-CGGGAGCTGAG
1 CTTAGACATAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
11969276 CCGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCGTCTGCATGCTGTTGGTC
66 CC-GTCGAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCC-CCTGCGTGCTGTCGATC
* * * **
11969341 CCGCTGCCACAACCCTCGATTCGA-CTGGGG
129 CTGCTGCCACAACCCTCGGTTCGATC-CGAT
* *
11969371 CTTAGACAT-GGAATGAACTCCCTATGCCTAAACCAACCCACGAAACG-GACGTGCGGGCGCTCA
1 CTTAGACATAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCA
* *
11969434 GCCAGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
65 GCC-GTCGAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
* * * * *
11969499 CTACTGTCGCAACCCTCGGTCCAATCCGAT
129 CTGCTGCCACAACCCTCGGTTCGATCCGAT
* *
11969529 CTTAGA-TTGGGAATGAACTC
1 CTTAGACATAGGAATGAACTC
11969549 TGTACGCTTA
Statistics
Matches: 271, Mismatches: 55, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
156 1 0.00
157 49 0.18
158 166 0.61
159 55 0.20
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGTCGAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTTCGATCCGAT
Found at i:11969825 original size:671 final size:669
Alignment explanation
Indices: 11968385--11969826 Score: 1752
Period size: 671 Copynumber: 2.1 Consensus size: 669
11968375 CTCTGTATGT
* * * *
11968385 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGTGGGCGCTTAGCT
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC-
* * * * ** * * *
11968450 AGTAGGAGAGGTAGAATGTGCAAGCTGGGGACCGGCCCGGTCCCCTCTACGTGCTGTCGATCTTG
65 CG-AGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCAATCCCCTCCACGTGCTGTCAATCCTG
*** * *
11968515 CTATTGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACC
129 CTACCACAACCCTTGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCATAACTCAACC
* * * * *
11968580 CATGAAATGAGCGTTCAGGCACTGAGCTGGCCAGAGAGGCATAATGCATAAGCTGAGGTTCAGCC
194 CACGAAATGAGCGTTCAGGCACTGAGCCGGCCAGAGAGGCATAATGCACAAGCAGAGGATCAGCC
* * ** *
11968645 CGGTCCCCATCTGCATGCTGCTGGTCTCACTGCCACAACCCTCAATCCGGTTGGGGTTAGACCTA
259 CGATCCCCATCTGCATGCTGCTGGTCCCACTGCCACAACCCTCAATCCGACTGGGGTTAGACATA
* * * * * * *
11968710 GAATGAACTCCCTATGCATAAGCCAATCCATGAAACGGGCGTGCGAGCGCTCTGTCGGTCGGAGA
324 GAATGAACTCCCTATGCATAAACCAACCCACGAAACGGACGTGCGAGCGCTCAGCCAGTCGGAGA
* * * *
11968775 GGCAAAATGCACAAGTCGAGGATCGGCTCGGTCCCCCCTGCATGATGTCGATCATACTATCGCAT
389 GGCAAAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTGCATGATGTCGATCATACTATCGCAA
* * *
11968840 CCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATTAACTCC
454 CCCTCAGTCCAATCCAATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGGATGAACTCC
* ** * *
11968905 GTATGCTTAAGTCAACCCATGAAATGAGCGTGCGGGCGGTCAGCCGGTCACAGAGGCATAATGCG
519 GTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGGTCAGCCGGCCACAGAGGCATAATGCG
* * *
11968970 CAAGCCAGGGATCAGCCCCGTCCCCCTTTGCGTGCTGTCAAACCCGCTGCTAGTCCTGCAACCAC
584 CAAGCCAGGGATCAGCCCCGTCCCCCTTTACGTGCTGCCAAACCCGCTGCCAGTCCTGCAACCAC
** *
11969035 AACCCTCGGTCTGGCTGGGGC
649 AACCCTCGGTCTAACAGGGGC
* ** *
11969056 TTAGACATGGAATGAACTCCGTATGCCTATGCCAACCCACGAAACGAGCGTGCGAACGTTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * *
11969121 GATTGAAAAGGCAAAATGTGCAAGCCCGGGATCGGCCCAAT-CCCTCCCGCGTGCTGTCAATCCT
66 GA--GGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCAATCCCCT-CCACGTGCTGTCAATCCT
* * * * *
11969185 GCTGCCACAACCGTTGGT-TCGGTCTGATCTTAGACTAGGAATGCACTCCGTATGCATAAGTCAA
128 GCTACCACAACCCTTGGTCT-GGTCCGATCTTAGACTAGGAATGAACTCCGTATGCATAACTCAA
* * *
11969249 CCCACGAAATGAGCG-TC-GGGAGCTGAGCCGGTC-GAAGAGGCATAATGCGCAAGCCAG-GGAT
192 CCCACGAAATGAGCGTTCAGGCA-CTGAGCCGGCCAG-AGAGGCATAATGCACAAG-CAGAGGAT
* * * * * *
11969310 CGGCCCGATCCCCGTCTGCATGCTGTTGGTCCCGCTGCCACAACCCTCGATTCGACTGGGGCTTA
254 CAGCCCGATCCCCATCTGCATGCTGCTGGTCCCACTGCCACAACCCTCAATCCGACTGGGG-TTA
* * *
11969375 GACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGGACGTGCGGGCGCTCAGCCAGT
318 GACATAGAATGAACTCCCTATGCATAAACCAACCCACGAAACGGACGTGCGAGCGCTCAGCCAGT
* * * * *
11969440 CGGAGAGGCAGAATGCGCAAGCC-AGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTACT
383 CGGAGAGGCAAAATGCACAAGCCGA-GGATCGGCCCGATCCCCCCTGCATGATGTCGATCATACT
* * * * *
11969504 GTCGCAACCCTCGGTCCAATCCGATCTTAGATTGGGAATGAACTCTGTACGCTTAGACTGGGGAT
447 ATCGCAACCCTCAGTCCAATCCAATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGGAT
* * *
11969569 GAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGTTCAGCCGGCCAGAGAGGCA
512 GAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGGTCAGCCGGCCACAGAGGCA
* * * *
11969634 TAATGCGCAAGTCAGGGA-CTAG-CCCGTTCCCTCTTTACGTGCTGCCGATCCCGCTGCCAGTCC
577 TAATGCGCAAGCCAGGGATC-AGCCCCG-TCCCCCTTTACGTGCTGCCAAACCCGCTGCCAGTCC
** *
11969697 TGCTGCCACAACCCTCAGT-TCAACAGGGGC
640 TGCAACCACAACCCTCGGTCT-AACAGGGGC
*
11969727 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* *
11969792 GACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGG
66 GA--GGAGAGGCAGAATGTGCAAGCCGGGGATCGG
11969827 TCTGGTCCCC
Statistics
Matches: 647, Mismatches: 112, Indels: 24
0.83 0.14 0.03
Matches are distributed among these distances:
669 5 0.01
670 94 0.15
671 548 0.85
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (669 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GAGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCAATCCCCTCCACGTGCTGTCAATCCTGCT
ACCACAACCCTTGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCATAACTCAACCCA
CGAAATGAGCGTTCAGGCACTGAGCCGGCCAGAGAGGCATAATGCACAAGCAGAGGATCAGCCCG
ATCCCCATCTGCATGCTGCTGGTCCCACTGCCACAACCCTCAATCCGACTGGGGTTAGACATAGA
ATGAACTCCCTATGCATAAACCAACCCACGAAACGGACGTGCGAGCGCTCAGCCAGTCGGAGAGG
CAAAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTGCATGATGTCGATCATACTATCGCAACC
CTCAGTCCAATCCAATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGGATGAACTCCGT
ATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGGTCAGCCGGCCACAGAGGCATAATGCGCA
AGCCAGGGATCAGCCCCGTCCCCCTTTACGTGCTGCCAAACCCGCTGCCAGTCCTGCAACCACAA
CCCTCGGTCTAACAGGGGC
Found at i:11969845 original size:171 final size:171
Alignment explanation
Indices: 11969554--11969886 Score: 409
Period size: 171 Copynumber: 1.9 Consensus size: 171
11969544 AACTCTGTAC
* * * *
11969554 GCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGTTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * * * *
11969619 CCGGCCAGAGAGGCATAATGCGCAAGTCAGGGACTAGCCCGTTCCCTCTTTACGTGCTGCCGATC
66 CCGACCAGAGAGGCAGAATGCGCAAGCCAGGGACTAGCCCGGTCCCCCCTTACGTGCTGCCGATC
**
11969684 CCGCTGCCAGTCCTGCTGCCACAACCCTCAGTTCAACAGGG
131 CCGCTGCCAGTCCTGCTAACACAACCCTCAGTTCAACAGGG
* *
11969725 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* * * * * * *
11969789 GCCGACCGGAGAGGCAGAATGCGTAAGCCGGGGA-TCGGTCTGGTCCCCCCTTACGTGCTGTCGA
65 GCCGACCAGAGAGGCAGAATGCGCAAGCCAGGGACT-AGCCCGGTCCCCCCTTACGTGCTGCCGA
* ** *
11969853 TCCTGCTGCTGGTCCTGCTAACGCAACCCTCAGT
129 TCCCGCTGCCAGTCCTGCTAACACAACCCTCAGT
11969887 CCGGTCTGAT
Statistics
Matches: 135, Mismatches: 25, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
170 1 0.01
171 133 0.99
172 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
CCGACCAGAGAGGCAGAATGCGCAAGCCAGGGACTAGCCCGGTCCCCCCTTACGTGCTGCCGATC
CCGCTGCCAGTCCTGCTAACACAACCCTCAGTTCAACAGGG
Found at i:11969935 original size:26 final size:26
Alignment explanation
Indices: 11969897--11969949 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11969887 CCGGTCTGAT
11969897 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
11969923 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
11969949 C
1 C
11969950 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11970297 original size:159 final size:159
Alignment explanation
Indices: 11969922--11970352 Score: 476
Period size: 159 Copynumber: 2.7 Consensus size: 159
11969912 AACTCCATAT
*
11969922 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
11969987 CCGGCCGGAGAGGCAAAATGCGCAAG-CTAGGGATCAGCCCGGTCCCTC-CTACGTACTGTCGAT
66 CCGGCCGGAGAGGCAAAATGCGTAAGCCGA-GGATCAGCTCGGTCCCCCTCTACGTACTGTCGAT
*** * *
11970050 CCTGTTGCAGCAACCCTCGGTCTGGTCCAA
130 CCCACTGCAGCAACCCTCGGTCCGCTCCAA
* * * * * *
11970080 TCTTAGACTAT-GAATGAACTCCGTATGCCAAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGA
1 GCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * ** * *
11970144 ACCGGCCGGAGAGGCATAATGCGTAAGCCGAGGATCAGCTCGGTCCCCCTCTGTGTGCTGTCGGT
65 GCCGGCCGGAGAGGCAAAATGCGTAAGCCGAGGATCAGCTCGGTCCCCCTCTACGTACTGTCGAT
***
11970209 CCCACTGCCA-CAACCCTCGGTCCGACT-GGG
130 CCCACTG-CAGCAACCCTCGGTCCG-CTCCAA
* * * *
11970239 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
11970304 TCGGCCGGAGAGGCAGAATGCATAAGCTGGGGATCGGCTCGGTCCCCCT
66 CCGGCCGGAGAGGCAAAATGCGTAAGCCGAGGATCAGCTCGGTCCCCCT
11970353 AGGTGCTGTC
Statistics
Matches: 225, Mismatches: 42, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
158 96 0.43
159 126 0.56
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAAAATGCGTAAGCCGAGGATCAGCTCGGTCCCCCTCTACGTACTGTCGATC
CCACTGCAGCAACCCTCGGTCCGCTCCAA
Found at i:11971146 original size:26 final size:26
Alignment explanation
Indices: 11971108--11971160 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11971098 GGCTCAAAAT
11971108 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
11971134 CTTAGACAT-GGAATGCACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
11971160 C
1 C
11971161 CTATGACAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:11971503 original size:159 final size:159
Alignment explanation
Indices: 11971133--11971507 Score: 427
Period size: 158 Copynumber: 2.4 Consensus size: 159
11971123 AACTCTGTAT
* ** * * *
11971133 GCTTAGACATGGAATGCACTCTGTATGCCTATGACAATCCATGAAACGAGCGTACG-GATGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGACAAACCATGAAACGAGCGTGCGAGATGCTCA
* * * * *
11971197 GCCGACCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGTTGTCGATC
66 ACCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATC
*
11971262 CTGCTACCACAACCATCGGTCCGGTCTGA
131 CCGCTACCACAACCATCGGTCCGGTCTGA
* * * * *
11971291 TCTTAGAC-TAGGAATGAACGTCGC-ATGCATAAGTCAAACCATAAAACGAGCGTGCGAGA-GCT
1 GCTTAGACAT-GGAATGAAC-TCCCTATGCCTAAGACAAACCATGAAACGAGCGTGCGAGATGCT
* ** *
11971353 GAACCGGTCGAAGAGGCATAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCTGCCG
64 CAACCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCC-CTACGTGCTGCCG
* * * *
11971418 GTCCCGCTACCACAACCCTCGGTTCGG-CTGGG
128 ATCCCGCTACCACAACCATCGGTCCGGTCT-GA
* * *
11971450 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGACAAACCATGAAACGAGCGTGCGAG
11971508 CGCTTAGTTG
Statistics
Matches: 179, Mismatches: 31, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
157 1 0.01
158 94 0.53
159 83 0.46
160 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGACAAACCATGAAACGAGCGTGCGAGATGCTCA
ACCGACCGAAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATC
CCGCTACCACAACCATCGGTCCGGTCTGA
Found at i:11971527 original size:159 final size:158
Alignment explanation
Indices: 11971204--11971579 Score: 427
Period size: 159 Copynumber: 2.4 Consensus size: 158
11971194 TCAGCCGACC
* * * *
11971204 GGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGTTGTCGATCCTGCTAC
1 GGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCCCGCTAC
* * *
11971269 CACAACCATCGGTCCGGTCTGATCTTAGACTAGGAATGAACGTCGCATGCATAAGTCAAACCATA
66 CACAACCATCGGTCCGGTCTGAGCTTAGACTAGGAATGAACGTCCCATGCATAAGCCAAACCATA
*
11971334 AAACGAGCGTGCGAGAGCTGAACCGGTC
131 AAACGAGCGTGCGAGAGCTGAACCGGTA
* * *
11971362 GAAGAGGCATAATGCGTAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCTGCCGGTCCCGCTA
1 GGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCC-CTACGTGCTGCCGATCCCGCTA
* * * * *
11971427 CCACAACCCTCGGTTCGG-CTGGGGCTTAGAC-ATGGAATGAAC-TCCCTATGCCTAAGCCAACC
65 CCACAACCATCGGTCCGGTCT-GAGCTTAGACTA-GGAATGAACGTCCC-ATGCATAAGCCAAAC
* * * * ***
11971489 CATGAAACGGGCGTGCGAGCGCTTAGTTGGTA
127 CATAAAACGAGCGTGCGAGAGCTGAACCGGTA
* * * * *
11971521 GGAGAGGTAGAATGCGCAAGCC-GGGAATCGGTCCGGTCCCCCCTACGTGCTACCGATCC
1 GGAGAGGCAGAATGCGTAAGCCAGGG-ATCGGCCCGATCCCCCCTACGTGCTGCCGATCC
11971580 TGCTGTCGCA
Statistics
Matches: 182, Mismatches: 31, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
158 64 0.35
159 118 0.65
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
GGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCCCGCTAC
CACAACCATCGGTCCGGTCTGAGCTTAGACTAGGAATGAACGTCCCATGCATAAGCCAAACCATA
AAACGAGCGTGCGAGAGCTGAACCGGTA
Found at i:11972359 original size:26 final size:26
Alignment explanation
Indices: 11972321--11972373 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11972311 GGCTTAAACT
*
11972321 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
11972347 CTTAGAC-GTGGAAAGAACTCCGTATG
1 CTTAGACTG-GGAAAGAACTCCGTATG
11972373 C
1 C
11972374 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:11972851 original size:26 final size:26
Alignment explanation
Indices: 11972822--11972871 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
11972812 CCGGTTTGAT
11972822 CTTAGACTAGGAATGAACTCCGTAGG
1 CTTAGACTAGGAATGAACTCCGTAGG
11972848 CTTAGACTAGGAATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
11972872 TGCCTAAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTAGG
Found at i:11972992 original size:184 final size:184
Alignment explanation
Indices: 11972662--11973029 Score: 420
Period size: 184 Copynumber: 2.0 Consensus size: 184
11972652 GTTTGACTGG
*
11972662 GGCTTAGACATGGAATGAACTCCCTATGCCTAGGCCAACCCACGAAACAGGCGTACGGTCGCTCA
1 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTACGGTCGCTCA
** * * * * * * *
11972727 GTTGGCCGGAGAGGCAGAAAGTGGAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTACCAATC
66 GCCGGCCGGAGAGGCAGAAAGCGAAAGCCAGGGACCGACTCGGTCCCCACTGCGTGATACCAATC
* * * ** *
11972792 CTACTGTCGTAACCCTCGATCCGGTTTGATCTTAGACTAGGAATGAACTCCGTA
131 CTACTATCGCAACCCTCGATCCGATCCGATATTAGACTAGGAATGAACTCCGTA
* * *
11972846 GGCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-GAGCGTGCGAG-CGC
1 GGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAG-GCGTACG-GTCGC
* * * **
11972908 TCAGCCGGTCGGAGAGGTAGAATA-CGAAAGCCAGGGACCGACTTGGTCCCCACTGCGTGATGTC
63 TCAGCCGGCCGGAGAGGCAGAA-AGCGAAAGCCAGGGACCGACTCGGTCCCCACTGCGTGATACC
* * * *
11972972 GATCCTGCTATCGCAACCCTCGGTCTGATCCGATATTAGACTAGGAATGAACTCCGTA
127 AATCCTACTATCGCAACCCTCGATCCGATCCGATATTAGACTAGGAATGAACTCCGTA
11973030 TGCCAAAGTC
Statistics
Matches: 152, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
183 2 0.01
184 148 0.97
185 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (184 bp):
GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTACGGTCGCTCA
GCCGGCCGGAGAGGCAGAAAGCGAAAGCCAGGGACCGACTCGGTCCCCACTGCGTGATACCAATC
CTACTATCGCAACCCTCGATCCGATCCGATATTAGACTAGGAATGAACTCCGTA
Found at i:11973362 original size:26 final size:26
Alignment explanation
Indices: 11973333--11973385 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
11973323 CCGATCCGAT
11973333 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11973359 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11973385 C
1 C
11973386 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11973577 original size:26 final size:26
Alignment explanation
Indices: 11973548--11973597 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
11973538 CCGGTCCGAT
11973548 CTTAGAC-TAAGAATGAACTCCGTACG
1 CTTAGACAT-AGAATGAACTCCGTACG
*
11973574 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATAGAATGAACTCCGTA
11973598 TGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (26 bp):
CTTAGACATAGAATGAACTCCGTACG
Found at i:11973875 original size:159 final size:156
Alignment explanation
Indices: 11973652--11974076 Score: 424
Period size: 159 Copynumber: 2.7 Consensus size: 156
11973642 CCGGAGATGT
* * *
11973652 AGAATGCGCAAGCCGGGGATCAACCCAGTCCCCCACTACGTGCTATCGATCCTGCTATCGCAACC
1 AGAATACGCAAGCCGGGGATCGACCCAGTCCCCC-CTACGTGCTGTCGATCCTGCTAT-GCAACC
* * * *
11973717 CTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAATGAG
64 CTCGGTC-GGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAG
* ** *
11973782 CGTGCAAGCGTTGAGCCAATCGAAGAGGC
128 CATGCAAGCACTCAGCCAATCGAAGAGGC
* * * * *
11973811 ATAATACGCAAGCCGGGG-TCTGGCTC-GATCCCCCTCTACGTGCTGTCGGTCCCGCTATGACAA
1 AGAATACGCAAGCCGGGGATC-GACCCAG-TCCCCC-CTACGTGCTGTCGATCCTGCTATG-CAA
* * * ** *
11973874 CCCTTGGTCCGACTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAT
62 CCCTCGGTCGGTCT-GATCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAT
* * * * * *
11973938 GGGCATGCAGGCACTCAGTCGATCGGAGAGGT
125 GAGCATGCAAGCACTCAGCCAATCGAAGAGGC
* * * ** *
11973970 AGAATTCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCTGATGCCGCAACCT
1 AGAATACGCAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGTCGATCCTGCT-ATGCAACCC
11974035 TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGC
65 TCGGT-CGGTCTGATCTTAGACTGGGAATGAACTCCATATGC
11974077 TTAGACTGGA
Statistics
Matches: 211, Mismatches: 45, Indels: 21
0.76 0.16 0.08
Matches are distributed among these distances:
157 1 0.00
158 58 0.27
159 148 0.70
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
AGAATACGCAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGTCGATCCTGCTATGCAACCCT
CGGTCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCAT
GCAAGCACTCAGCCAATCGAAGAGGC
Found at i:11974692 original size:11 final size:11
Alignment explanation
Indices: 11974672--11974704 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
11974662 CGGTTAGGCT
*
11974672 CTCCGTCGATG
1 CTCCGACGATG
11974683 CTCCGACGATG
1 CTCCGACGATG
11974694 CTCCGACGATG
1 CTCCGACGATG
11974705 GTGCCCCGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.15, C:0.36, G:0.27, T:0.21
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:11975638 original size:26 final size:26
Alignment explanation
Indices: 11975602--11975654 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11975592 CCGATCTGAT
11975602 CTTAGACTGGGAATGAACT-TGGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
11975628 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
11975654 C
1 C
11975655 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:11977241 original size:25 final size:26
Alignment explanation
Indices: 11977204--11977255 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
11977194 GGCTCAAAAT
11977204 CTTAGACTGGGAATGAACTCT-TATG
1 CTTAGACTGGGAATGAACTCTGTATG
11977229 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
11977255 C
1 C
11977256 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:11977710 original size:158 final size:159
Alignment explanation
Indices: 11977229--11977699 Score: 505
Period size: 158 Copynumber: 3.0 Consensus size: 159
11977219 AACTCTTATG
* *
11977229 CTTAGACATGGAATGAACT-CTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTGAG
* * *
11977293 CCGGTCGAAGAGGCAGATTGCGCAAGCCGGGGATC-AGGCCGGTCCCCCCTGCGTGCTGTCGAT-
65 CCGGTCGAAGAGGCAAAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCCTGCGTGCTGTCGATC
* ** ** *
11977356 CTTGCTATTGTAACCCTCAATT-CGGTCTGAT
129 CTCGCTACCG-AACCCTCGGTTCCGATCTGAT
* * * * * *
11977387 CTTAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCCATGAAATGAGCATGCGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTGAG
* * * *
11977451 CCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTC
65 CCGGTCGAAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGATC
* * * **
11977516 C-CACTACCACAACCCTCGG-TCC-AACTGGGG
129 CTCGCTACC-GAACCCTCGGTTCCGATCT-GAT
*
11977546 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACG-GCATACGGGCGCTGAGC
1 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTGAGC
** * *
11977610 CGGTC-AGAGAGGCAAAATGCATAAGCCGGGGATCGATCCGGTCCCCCCTGCGTGCTGGTCAATC
66 CGGTCGA-AGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCT-GTCGATC
11977674 CTCGCTA-CGAACCCTCGGTTCCGATC
129 CTCGCTACCGAACCCTCGGTTCCGATC
11977700 CGATTCTAGA
Statistics
Matches: 256, Mismatches: 43, Indels: 27
0.79 0.13 0.08
Matches are distributed among these distances:
157 20 0.08
158 160 0.62
159 74 0.29
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTGAGC
CGGTCGAAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCT
CGCTACCGAACCCTCGGTTCCGATCTGAT
Found at i:11978441 original size:26 final size:26
Alignment explanation
Indices: 11978400--11978452 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11978390 CCGATCCGAT
*
11978400 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
11978426 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
11978452 C
1 C
11978453 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:11978698 original size:344 final size:340
Alignment explanation
Indices: 11977387--11978699 Score: 1180
Period size: 344 Copynumber: 3.8 Consensus size: 340
11977377 TCGGTCTGAT
* * * ** * * * *
11977387 CTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCATGAAATGAGCATGCGGGCGTTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGTGGGCGCTCAGC
* * * * *
11977452 CGGCCGAAGAGGCATAATGCGCAAGCCGGGGATC-GACCCGATCCCCCTCTGCGTGCTGTCGGTC
66 CGACTGAAGAGGCATAATGCGTAAGCCGAGGATCAG-CCCGATCCCCCGCTGCGTGCTGTCGGTC
* * * *
11977516 CCACTACCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCA
130 CCGCTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * * * * *
11977581 ACCCACGAAACGGCATACGGGCGCTGAGCCGGTCAGAGAGGCAAAATGCATAAGCCGGGGATC-G
195 ACCCACGAAACGGCGTGCGGGCGCTTAGCCGGCCGGAGAGGCAGAATGCACAAGCTGGGGATCAG
* * * *
11977645 ATCCGGTCCCCCCTGCGTGCTGGTCAATCCTCGCTACG-AACCCTCGGTTCCGATCCGAT-TCTA
260 CT-CGATCCCCCCTGCGTG-TTG-CAATCCT-GCTACGCAACCCTC-GATCCGATCCGATCT-TA
*
11977708 GACTAGGAGTGAACT-TCGTTTG
319 GACTAGGAGTGAACTCT-GTATG
* * * *
11977730 CTTAGACTGGGG-TG-ATTCTGT-TGCCTAAAGTCAA-CC-CATAATGAGCTGTAGTGGACGCTC
1 CTTAGACTGGGGATGAACTCCGTATGCCT-AAGTCAACCCACAAAATGAGC-GT-GTGGGCGCTC
** * * * *
11977790 AGTGGGC--AAAAGG-ATAATGCATTAAGCCGAGGATTAGCCCGATCCCCCGCTGCGTGCCTGTC
63 AGCCGACTGAAGAGGCATAATGC-GTAAGCCGAGGATCAGCCCGATCCCCCGCTGCGTG-CTGTC
* *
11977852 GGTCCCGCTGCCACAACCCTCGGTCCCTATTCCGACTGGGGCTTTAGA-ACTGGAAATGACTCCT
126 GGTCCCGCTACCACAACCCTC-G-----A-TCCGACTGGGGC-TTAGACA-TGG-AATGA--ACT
* * * * *
11977916 CCACTTATGCCTAAGCCAA--CACGAACATGGGGTTCTGGCGCTCAGCCCGGGACCGG-GAGGCA
179 CC-C-TATGCCTAAGCCAACCCACGAA-ACGGCGTGCGGGCGCTTAG-CC-GG-CCGGAGAGGCA
* ** * * *
11977978 GAAATGCAACAAGC-GAGGAATTGGCTCGAT-CCCCCTGCGTGCTGCAGATCCTGCTGCTACAAC
238 G-AATGC-ACAAGCTG-GGGATCAGCTCGATCCCCCCTGCGTGTTGCA-ATCCTGCTAC-GCAAC
* * * *
11978041 CCTC-AGTCCGGTTCGATCTTAGACTGGGAGTGAACTCCAG-ATG
298 CCTCGA-TCCGATCCGATCTTAGACTAGGAGTGAACT-CTGTATG
* * * *
11978084 CTTAGATTGGGGATGAACTCCGTATG-CTAAGTCAACCCACGAAATGAGCGTGTGGGTGCTAAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGTGGGCGCTCAGC
* *
11978148 CGACTGGAGAGGCATAATGCGTAAGTCGAGGATCAGCCCGAT-CCCCGACTGCGTGCTGTCGGTC
66 CGACTGAAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGATCCCCCG-CTGCGTGCTGTCGGTC
* * * *
11978212 CCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCA
130 CCGCTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* ** * *
11978277 ACCCACAAAACGGGCGTGCGGGCGCTTAGTTGGCCGGAGAGGTAGAATGCACAA-ATCGGGGATC
195 ACCCACGAAAC-GGCGTGCGGGCGCTTAGCCGGCCGGAGAGGCAGAATGCACAAGCT-GGGGATC
* * * *
11978341 AGCCCGGTCCCCCCTGCATGTTGCCAATCCTACTATCGCAACCCTCGATCCGATCCGATCTTAGA
258 AGCTCGATCCCCCCTGCGTGTTG-CAATCCTGCTA-CGCAACCCTCGATCCGATCCGATCTTAGA
*
11978406 CTAGGAATGAACTCTGTATG
321 CTAGGAGTGAACTCTGTATG
* *
11978426 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGTGGGCGTTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGTGGGCGCTCAGC
* * * * * * *
11978491 TGACTGGAGAGGCATAATGCGTAAGCCGGGGGATCAGCTCGGTCCCCCGCTGTGTGCTATCGGTC
66 CGACTGAAGAGGCATAATGCGTAAGCC-GAGGATCAGCCCGATCCCCCGCTGCGTGCTGTCGGTC
* * **
11978556 CCGCTACCACAACCCTCGATCCGACTGGGGCTTACACTTGGAATGAACTCCCTATTTCTAAGCCA
130 CCGCTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * ** *
11978621 ACCCATGAAACGAGCGTGCGGGCGCTTAGCCGGTCGGAGAGGCAGAATGTGCAAGCTGGGGATCT
195 ACCCACGAAACG-GCGTGCGGGCGCTTAGCCGGCCGGAGAGGCAGAATGCACAAGCTGGGGATCA
*
11978686 TCTCGATCCCCCCT
259 GCTCGATCCCCCCT
11978700 ATGTGCTATC
Statistics
Matches: 780, Mismatches: 129, Indels: 121
0.76 0.13 0.12
Matches are distributed among these distances:
338 7 0.01
339 40 0.05
340 32 0.04
341 38 0.05
342 93 0.12
343 96 0.12
344 147 0.19
345 28 0.04
347 17 0.02
348 16 0.02
349 17 0.02
351 10 0.01
352 13 0.02
353 22 0.03
354 52 0.07
355 49 0.06
356 54 0.07
357 42 0.05
358 7 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (340 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGTGGGCGCTCAGC
CGACTGAAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGATCCCCCGCTGCGTGCTGTCGGTCC
CGCTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGGCGTGCGGGCGCTTAGCCGGCCGGAGAGGCAGAATGCACAAGCTGGGGATCAGC
TCGATCCCCCCTGCGTGTTGCAATCCTGCTACGCAACCCTCGATCCGATCCGATCTTAGACTAGG
AGTGAACTCTGTATG
Found at i:11979910 original size:355 final size:343
Alignment explanation
Indices: 11979017--11980076 Score: 994
Period size: 344 Copynumber: 3.0 Consensus size: 343
11979007 CCGGCCAAAA
* * *
11979017 AGGCATAATGCGCAAGCCAGGAATCAGCTTGATCTCC-CTCTGCGTGCTGTCGGTCCTGCTGCCA
1 AGGCATAATGCGCAAGCCAGGGATCAGCTCGATC-CCTCACTGCGTGCTGTCGGTCCTGCTGCCA
* * * * * **
11979081 CAACCCTCGATCTGGTTGGGGCTTAGAGATGGAATGAACTCCCTACGCCTAAGCCAACCCACAAA
65 CAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCTACCCATGAA
* * * ** * * * * *
11979146 ACAGGCGTCCGGGTGCTCAACCGGCCAGAA-AAGCAGAATGTGCAACTCGAGGATTGGCCTGGTC
130 ACAGGCGTGCGGGTGCT-TAGCGATC-GAAGAGGCAGAATGCGCAAGTCGAGGAATGGCCCGGTC
* * * * * * *
11979210 CCCCTTGCGTGCTACCGATCTTACTGTCGCAACCTTCGGTTTGGTCTGATCTTAGACTGGGAATG
193 CCCCCTGCGTGCTATCGATCCTACTGTCGCAACCCTCGGTCTAGTCTGATCTTACACTGGGAATG
* *
11979275 AACTCCATATGCTTAGACTGGGGTTGAAATCTGTATGCCTAAGTCAACCCACGAAAATGAGCATG
258 AACTCCATATGCTTAGACTGGGGATGAAATCAGTATGCCTAAGTCAACCCACGAAAATGAGCATG
** *
11979340 TGGGTGCTCAGCCGACCGGAG
323 TGGGCACTCAGCCGACAGGAG
* * * *
11979361 AGGCATAATGCGTAAGCCAGGGATCAGCTCGATCCCTCACTGTGTGCTGTCGGTCCCGTTGCCAC
1 AGGCATAATGCGCAAGCCAGGGATCAGCTCGATCCCTCACTGCGTGCTGTCGGTCCTGCTGCCAC
* *
11979426 AACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCTACCCATGAAA
66 AACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCTACCCATGAAA
* * * * * * * * *
11979491 CAGGCATGCGGGCGCTTAGC-CTGCCAGAGAGGCAGAATGCGTAGGCCAAGG-ATCGGCTCGGTC
131 CAGGCGTGCGGGTGCTTAGCGAT-CGA-AGAGGCAGAATGCGCAAGTCGAGGAAT-GGCCCGGTC
* * *
11979554 CCCCCTACGTGCTATCGATCCTACTGTTGCAGCCCTCGGTCTAGTCTGATCTTACACTGGGAATG
193 CCCCCTGCGTGCTATCGATCCTACTGTCGCAACCCTCGGTCTAGTCTGATCTTACACTGGGAATG
* * * *
11979619 AACTTCGTATGCTTAGATTGGGGATGAACTCAGTATGCCTAAGTCAACCCACG-AAATGAG-A-G
258 AACTCCATATGCTTAGACTGGGGATGAAATCAGTATGCCTAAGTCAACCCACGAAAATGAGCATG
11979681 TGCTGGCACTCAGCCGACAGGAG
323 TG--GGCACTCAGCCGACAGGAG
* * *
11979704 AGGCTTAATGTGCAAGCCAGGGATCAGAC-C-AGTCCCCCTCTGCGTTCTGCCGATCCCGCTGTC
1 AGGCATAATGCGCAAGCCAGGGATCAG-CTCGA-T---CC-CT-C--ACTG-CG-T---GCTGTC
* * * * *
11979767 GGTCCTGCTACCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAGCTCCGTATGCCTAA
52 GGTCCTGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
*
11979832 GCCTACCCATGAAAC-GAGCGTGCGGGTGCTTAGTCGATCGAAGAGGTAGAATGCGCAAGTCGAG
117 GCCTACCCATGAAACAG-GCGTGCGGGTGCTTAG-CGATCGAAGAGGCAGAATGCGCAAGTCGAG
* * * * ** * * * * *
11979896 GAATGGCCCGGTCCCCCCCTGTGTGCTGTCGATCCTGCTGCCATAACCTTCAGTCCAATCCGATC
180 GAATGGCCCGGT-CCCCCCTGCGTGCTATCGATCCTACTGTCGCAACCCTCGGTCTAGTCTGATC
* * * * * *
11979961 TTAGATTGGGAATGAACCCCATATGCTTAGACAT-GGAAT-AAACTCCGTATGCCTAAGACAACC
244 TTACACTGGGAATGAACTCCATATGCTTAGAC-TGGGGATGAAA-TCAGTATGCCTAAGTCAACC
* * * * * *
11980024 CTC-AAAACGAGCGTGTGGGCGCTCAGCCAACCGGAG
307 CACGAAAATGAGCATGTGGGCACTCAGCCGACAGGAG
* *
11980060 AGGCAGAATGCACAAGC
1 AGGCATAATGCGCAAGC
11980077 TGGGGATTGG
Statistics
Matches: 574, Mismatches: 111, Indels: 50
0.78 0.15 0.07
Matches are distributed among these distances:
341 3 0.01
342 3 0.01
343 56 0.10
344 249 0.43
346 2 0.00
347 2 0.00
348 1 0.00
350 3 0.01
351 1 0.00
352 1 0.00
354 1 0.00
355 119 0.21
356 128 0.22
357 2 0.00
358 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.22
Consensus pattern (343 bp):
AGGCATAATGCGCAAGCCAGGGATCAGCTCGATCCCTCACTGCGTGCTGTCGGTCCTGCTGCCAC
AACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCTACCCATGAAA
CAGGCGTGCGGGTGCTTAGCGATCGAAGAGGCAGAATGCGCAAGTCGAGGAATGGCCCGGTCCCC
CCTGCGTGCTATCGATCCTACTGTCGCAACCCTCGGTCTAGTCTGATCTTACACTGGGAATGAAC
TCCATATGCTTAGACTGGGGATGAAATCAGTATGCCTAAGTCAACCCACGAAAATGAGCATGTGG
GCACTCAGCCGACAGGAG
Found at i:11980148 original size:185 final size:185
Alignment explanation
Indices: 11979800--11980171 Score: 426
Period size: 185 Copynumber: 2.0 Consensus size: 185
11979790 TCCGGCTGGG
* * * * * * *
11979800 GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCTACCCATGAAACGAGCGTGCGGGTGCTTAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGACAACCCATAAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
11979865 TCGATCGAAGAGGTAGAATGCGCAAGTCGAGGAATGGCCCGGTCCCCCCCTGTGTGCTGTCGATC
66 CCAACCGAAGAGGCAGAATGCACAAGTCGAGGAATGGCCCAGTCCCCCCCTGCGTGCTGTCGATC
* * *
11979930 CTGCTGCCATAACCTTCAGTCCAATCCGATCTTAGATTGGGAATGAACCCCATAT
131 CTGCTACCATAACCTTCAGTCCAATACGATCTTAGACTGGGAATGAACCCCATAT
*
11979985 GCTTAGACATGGAATAAACTCCGTATGCCTAAGACAACCC-TCAAAACGAGCGTGTGGGCGCTCA
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGACAACCCAT-AAAACGAGCGTGCGGGCGCTCA
* * * *
11980049 GCCAACCGGAGAGGCAGAATGCACAAG-CTGGGGATTGGCCTAGTCCCCCCCTGCGTGCTGTCGA
65 GCCAACCGAAGAGGCAGAATGCACAAGTC-GAGGAATGGCCCAGTCCCCCCCTGCGTGCTGTCGA
** * ** * * *
11980113 TCCTGCTACTGTAACGC-TCGGTCTGATATGATCTTAGACTGGGAATGAACTCCGTAT
129 TCCTGCTACCATAAC-CTTCAGTCCAATACGATCTTAGACTGGGAATGAACCCCATAT
11980170 GC
1 GC
11980172 CTAAGTCAAC
Statistics
Matches: 154, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
184 2 0.01
185 151 0.98
186 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (185 bp):
GCTTAGACATGGAATAAACTCCGTATGCCTAAGACAACCCATAAAACGAGCGTGCGGGCGCTCAG
CCAACCGAAGAGGCAGAATGCACAAGTCGAGGAATGGCCCAGTCCCCCCCTGCGTGCTGTCGATC
CTGCTACCATAACCTTCAGTCCAATACGATCTTAGACTGGGAATGAACCCCATAT
Found at i:11980268 original size:858 final size:863
Alignment explanation
Indices: 11979286--11981057 Score: 2065
Period size: 858 Copynumber: 2.1 Consensus size: 863
11979276 ACTCCATATG
** * * * *
11979286 CTTAGACTGGGGTTGAAATCTGTATGCCTAAGTCAACCCACGAAAATGAGCATGTGGGTGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAATGAGCATGCGGGTGCTCAA
* * * **
11979351 CCGACCGGAGAGGCATAATGCGTAAGCCAGGGATCAGCTCGATCCCTCACTGTGTGCTGTCGGTC
66 CCGACCAGAGAGGCATAATGCGCAAGCCAGGGATCAGCTCGATCCCCCACTACGTGCTGTCGGTC
** * * * *
11979416 CCGTTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCT
131 CCACTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATAAACTCCCTATACCTAAGCCA
** * * * * *
11979481 ACCCATGAAAC-AGGCATGCGGGCGCTTAGCCTGCCAGAGAGGCAGAATGCGTAGGCCAAGGATC
196 ACCCACAAAACGA-GCATACGGGCGCTCAGCCGGCCAGAGAGGCAGAATACGTAAGCCAAGGATC
* * * * * * *
11979545 GGCTCGGTCCCCCCTACGTGCTATCGATCCTACTGTTGCAGCCCTCGGTCTAG-TCTGATCTTAC
260 GACCCGGTCCCCCCTACATGCTATCGATCCTACTGTCGCAACCCTCGATC-AGATCCGATCTTAC
* *
11979609 ACTGGGAATGAACTTC-GTATGCTTAGATTGGGGATGAACTCAGTATGCCTAAGTCAACCCACGA
324 ACTGGGAATGAA-ATCGGTATGCTTAGACTGGGGATGAACTCAGTATGCCTAAGTCAACCCACGA
* * * *
11979673 AATGAGAGTGCTG-GCACTCAGCC-GACAGGAGAGGCTTAATGTGCAAGCCAGGGATCAGAC-C-
388 AACGAGAGTGC-GAGCACTCAGCCAGAC-GGAGAGGCATAATGCGCAAGCCAGGAATCAG-CTCG
* * * * *
11979734 AGTCCCCCTCTGCGTTCTGCCGATCCCGCTGTCGGTCCTGCTACCACAACCCTTGGTCCGGCTGG
450 A-TCCCCCTCTACGTGCTGCCGATCCCGCTGTCGGTCCTGCTACCACAACCCTCGATCCAGCTGG
* * * * * * ** *
11979799 GGCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCTACCCATGAAACGAGCGTGCGGGTGCTTA
514 GGCTT-GACAGGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCA
* * * * * *
11979864 GTC-GATC-GAAGAGGTAGAATGCGCAAGTCGAGGAAT-GGCCCGGTCCCCCCCTGTGTGCTGTC
578 GCCAG-TCAG-AGAGGCAGAATGCGCAAG-CCAGGAATCGGCCCGGT-ACCCCCTATATGCTGTC
* * * *
11979926 GAT-C-CTGCT-G-C-C-AT-AACCTTCAGTCCAATCCGATCTTAGATTGGGAATGAACCCCATA
639 GATCCGCTGCTGGTCTCTATCAACCCTCAGTCCAATCCGATCTTAGAATGAGAATGAACCCCACA
* * * *
11979984 TGCTTAGACATGGAATAAACTCCGTATGCCTAAGACAACCCTCAAAACGAGCGTGTGGGCGCTCA
704 TGCTTAGACATGGAATAAACTCCGTATGCCTAAGACAACCCACAAAACGAGCATGCGGGCACTCA
** * * *
11980049 GCCAACCGGAGAGGCAGAATGCACAAGCTGGGGATTGGCCTAG-TCCCCCCCTGCGTGCTGTCGA
769 GCCAACCGGAGAGGCAGAATGCACAAGCCAGGGATCGACC-AGAT-CCCCCCTGCGTACTGTCGA
* * *
11980113 TCCTGCTACTGTAACGCTCGGTCTGATAT-GAT
832 TCCTACTACCGTAACCCTCGGTCTG-TATCGAT
** *
11980145 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTGCG-AAATGAGCGTGCGGGTGCTCAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAATGAGCATGCGGGTGCTCAA
* * * * *
11980209 TCGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCAGC-CTGGTCCCCCTCTACGTGCTGTCGGT
66 CCGACCAGAGAGGCATAATGCGCAAGCCAGGGATCAGCTC-GATCCCCCACTACGTGCTGTCGGT
* *
11980273 CCCACTACCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCC
130 CCCACTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATAAACTCCCTATACCTAAGCC
* * * * *
11980338 AATCCACAAAACGAGCATACGGGCGCTCAGTCGGCCGGAGAGGTAGAATACGTAAGCCAGGGATC
195 AACCCACAAAACGAGCATACGGGCGCTCAGCCGGCCAGAGAGGCAGAATACGTAAGCCAAGGATC
* * * *
11980403 GACCCGGTCCCCCCTGCATGCTATCGATCCTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGA
260 GACCCGGTCCCCCCTACATGCTATCGATCCTACTGTCGCAACCCTCGATCAGATCCGATCTTACA
* * *
11980468 CTGGGAATGAAATCGGTATGCTTAGACTGGGGATGGACTCTGTATGCCTAAGTCAACCCATGAAA
325 CTGGGAATGAAATCGGTATGCTTAGACTGGGGATGAACTCAGTATGCCTAAGTCAACCCACGAAA
* *** * * *
11980533 CGAGCGTGCGAGTGTTCAGCCAGTCGGAGAGGCATAATGCGTAAGCCAGGAATTAGCTCGATCCC
390 CGAGAGTGCGAGCACTCAGCCAGACGGAGAGGCATAATGCGCAAGCCAGGAATCAGCTCGATCCC
* *
11980598 TCTCTACGTGCTGTCGATCCCGCTGTCGGTCCTGCTACCACAACCCTCGATCCAGCTGGGGCTTG
455 CCTCTACGTGCTGCCGATCCCGCTGTCGGTCCTGCTACCACAACCCTCGATCCAGCTGGGGCTTG
* *
11980663 ATAGGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGTGTACGGGCACTCAGCCAGTC
520 ACAGGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCCAGTC
* *
11980728 AGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGGTACCCCCTATATGCTGTCGATCCTGCTGC
585 AGAGAGGCAGAATGCGCAAGCCAGGAATCGGCCCGGTACCCCCTATATGCTGTCGATCC-GCTGC
* * *
11980793 TGGTCTTGCTATCGCAACCCTCAGTCCGATCCGATCTTAGAATGAGAATGAACTCCGCATGCTTA
649 TGGTC-T-CTAT--CAACCCTCAGTCCAATCCGATCTTAGAATGAGAATGAACCCCACATGCTTA
* * * * * * ***
11980858 GACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCACTCAGTCGGT
710 GACATGGAATAAACTCCGTATGCCTAAGACAACCCACAAAACGAGCATGCGGGCACTCAGCCAAC
* * *
11980923 CGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCTCCCCTGCGTACTGTCGATCCTACTA
775 CGGAGAGGCAGAATGCACAAGCCAGGGATCGACCAGATCCCCCCTGCGTACTGTCGATCCTACTA
* *
11980988 CCGTAACCCTCGGTTTGTTTCGAT
840 CCGTAACCCTCGGTCTGTATCGAT
* *
11981012 CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAA
11981058 GAGTGTGTGG
Statistics
Matches: 758, Mismatches: 129, Indels: 43
0.82 0.14 0.05
Matches are distributed among these distances:
856 23 0.03
857 83 0.11
858 392 0.52
859 45 0.06
860 1 0.00
861 1 0.00
864 1 0.00
865 2 0.00
866 2 0.00
867 80 0.11
868 128 0.17
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (863 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAATGAGCATGCGGGTGCTCAA
CCGACCAGAGAGGCATAATGCGCAAGCCAGGGATCAGCTCGATCCCCCACTACGTGCTGTCGGTC
CCACTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATAAACTCCCTATACCTAAGCCA
ACCCACAAAACGAGCATACGGGCGCTCAGCCGGCCAGAGAGGCAGAATACGTAAGCCAAGGATCG
ACCCGGTCCCCCCTACATGCTATCGATCCTACTGTCGCAACCCTCGATCAGATCCGATCTTACAC
TGGGAATGAAATCGGTATGCTTAGACTGGGGATGAACTCAGTATGCCTAAGTCAACCCACGAAAC
GAGAGTGCGAGCACTCAGCCAGACGGAGAGGCATAATGCGCAAGCCAGGAATCAGCTCGATCCCC
CTCTACGTGCTGCCGATCCCGCTGTCGGTCCTGCTACCACAACCCTCGATCCAGCTGGGGCTTGA
CAGGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCCAGTCA
GAGAGGCAGAATGCGCAAGCCAGGAATCGGCCCGGTACCCCCTATATGCTGTCGATCCGCTGCTG
GTCTCTATCAACCCTCAGTCCAATCCGATCTTAGAATGAGAATGAACCCCACATGCTTAGACATG
GAATAAACTCCGTATGCCTAAGACAACCCACAAAACGAGCATGCGGGCACTCAGCCAACCGGAGA
GGCAGAATGCACAAGCCAGGGATCGACCAGATCCCCCCTGCGTACTGTCGATCCTACTACCGTAA
CCCTCGGTCTGTATCGAT
Found at i:11980366 original size:159 final size:157
Alignment explanation
Indices: 11979985--11980416 Score: 409
Period size: 159 Copynumber: 2.7 Consensus size: 157
11979975 AACCCCATAT
* *
11979985 GCTTAGACATGGAATAAACTCCGTATGCCTAAGACAACCCTCAAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGACAA-CCACAAAACGAGCGTGCGGGCGCTCAG
* ** * * * * *
11980050 CCAACCGGAGAGGCAGAATGCACAAGCTGGGGATTGGCCTAGTCCCCCCCTGCGTGCTGTCGATC
65 TCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGA-TCGCCTGGTCCCCCCCTACGTGCTGTCGATC
** *** * * *
11980115 CTGCTACTGTAACGCTCGGTCTGATATGA
129 CCACTACCACAACCCTCGGTCCGATAGGA
* * * * * * *
11980144 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCTGCGAAATGAGCGTGCGGGTGCTCA
1 GCTTAGACAT-GGAATAAACTCCGTATGCCTAAGACAACC-ACAAAACGAGCGTGCGGGCGCTCA
* * * * *
11980208 ATCGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCAGCCTGGTCCCCCTCTACGTGCTGTCGGT
64 GTCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GCCTGGTCCCCCCCTACGTGCTGTCGAT
* *
11980273 CCCACTACCACAACCCTTGGTCCGACT-GGG
128 CCCACTACCACAACCCTCGGTCCGA-TAGGA
* * * *
11980303 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAATCCACAAAACGAGCATACGGGCGCTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGACAA-CCACAAAACGAGCGTGCGGGCGCTCAG
* * * * *
11980368 TCGGCCGGAGAGGTAGAATACGTAAGCCAGGGATCGACCCGGTCCCCCC
65 TCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCG-CCTGGTCCCCCC
11980417 TGCATGCTAT
Statistics
Matches: 216, Mismatches: 50, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
158 5 0.02
159 207 0.96
160 4 0.02
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATAAACTCCGTATGCCTAAGACAACCACAAAACGAGCGTGCGGGCGCTCAGT
CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGCCTGGTCCCCCCCTACGTGCTGTCGATCCC
ACTACCACAACCCTCGGTCCGATAGGA
Found at i:11982052 original size:26 final size:26
Alignment explanation
Indices: 11982014--11982066 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
11982004 GGCTCAAAAT
11982014 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11982040 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
11982066 C
1 C
11982067 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11982342 original size:159 final size:159
Alignment explanation
Indices: 11982040--11982539 Score: 382
Period size: 159 Copynumber: 3.1 Consensus size: 159
11982030 ACTCCGTATG
* *
11982040 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
** * * **
11982105 CGGTCGGAGAAGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCTACCCTGCGTGCTGTCGATCC
66 CGGTCAAAGAAGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCTACCCTGCGTGCTACCGATCC
** ***
11982170 TGCTACTGTAACCCTCAATCCGATCCGAT
131 CACTACCACAACCCTCAATCCGATCCGAT
* * *
11982199 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
* * * *
11982263 CCGG-CTAAAGAGGCATAATGCGCAAGTTGGGGATCGACCCGGTCCT-CCTCTGCGTGCTACCGG
65 CCGGTC-AAAGAAGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCTACC-CTGCGTGCTACCGA
* *** * * **
11982326 TCCCACTGCCACAACCCCTTGGTCC-AGCTGGGG
128 TCCCACTACCACAA-CCCTCAATCCGATC-CGAT
* * * * * * * ** * *
11982359 CTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCACGTAATGGGCATGCGGACGTTGAGT
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
* ** * * * * * * * ** * *
11982424 CGATCTGAGAGGTAGAATGCGTAAGCCGAGGATCGGCCCGATCCT-CTTTGCGTACTCCCGATCC
66 CGGTCAAAGAAGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCTACCCTGCGTGCTACCGATCC
** * * *
11982488 TGCTACCGCAACCCTCGATCCGATCCAAT
131 CACTACCACAACCCTCAATCCGATCCGAT
11982517 CTTAGAC-TGGGAATGAACTCCGT
1 CTTAGACAT-GGAATGAACTCCGT
11982540 TTGCTTAGAC
Statistics
Matches: 263, Mismatches: 69, Indels: 19
0.75 0.20 0.05
Matches are distributed among these distances:
157 1 0.00
158 31 0.12
159 137 0.52
160 92 0.35
161 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
CGGTCAAAGAAGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCTACCCTGCGTGCTACCGATCC
CACTACCACAACCCTCAATCCGATCCGAT
Found at i:11982911 original size:26 final size:26
Alignment explanation
Indices: 11982859--11982911 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11982849 CCAGTTCGAT
**
11982859 CTTAGACTGGGAATGAACTCTGGATG
1 CTTAGACTGGGAATGAACTCCAGATG
* *
11982885 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCAGATG
11982911 C
1 C
11982912 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCAGATG
Found at i:11983124 original size:343 final size:339
Alignment explanation
Indices: 11982199--11983478 Score: 1216
Period size: 343 Copynumber: 3.7 Consensus size: 339
11982189 CCGATCCGAT
* * * ** ** * *
11982199 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCACTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTTGGTGCTCAGT
* ** ** * * * * * **
11982264 CG-GCTAAAGAGGCATAATGCGCAAGTTGGGGA-TCGACCCGGTCCTCCTC-TGCGTGCTACCGG
66 CGATC-GGAGAGGCATAATGCGCAAGCCGAGGATTAG-CTCGATCC-CC-CGTGCATGCTGTCGG
** * *
11982326 TCCCACTGCCACAACCCCTTGGTCC-AGCTGGGGCTTAGACATGGAATGAAATCCCTATGCCTAA
127 TCCCGTTGCCACAA-CCCTCGGTCCGA-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* * * * * * *
11982390 GCCAACCCACGTAATGGGCATGCGGACG-TTGAGTCGATCTGAGAGGTAGAATGCGTAAGCCGAG
190 GCCAACCCACGAAACGGGCGTGCGGACGCTT-AATCGATCAGAGAGGCAGAATGCGCAAGCCGAG
* * * ** * * *
11982454 GATCGGCCCGATCCTCTTTGCGTACTCCCGATCCTGCTACCGCAACCCTCGATCCGATCCAATCT
254 GATCGGCTCGATCCCCTTTGCGTGCTGTCGATCCTGCT-CTGCAACCCTCG-TCCG-TTCGATCT
*
11982519 TAGACTGGGAATGAACTCCGTTTG
316 TAGACTGGGAATGAACTCCGTATG
* * * * * *
11982543 CTTAGACTGGGGATGAACTCTGTATGCGTAAGTCAACCCAGGAAATGAGTGTGTGGGCGCTC-GT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTTGGTGCTCAGT
* * * * ** * *
11982607 CGGTTGGAGAGGCATAATGTGCAAGCC-AGGGATTAGCTCGATCCCCTGCTGTGTGCTATAGGTC
66 CGATCGGAGAGGCATAATGCGCAAGCCGA-GGATTAGCTCGATCCCCCG-TGCATGCTGTCGGTC
*
11982671 CCGTTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCA
129 CCGTTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * *
11982736 ACCCACGAAACGGGCGTGCGGATGCTCAATCGACCAGAGAGGCAGAATGCACAAGCCGAGGATCG
194 ACCCACGAAACGGGCGTGCGGACGCTTAATCGATCAGAGAGGCAGAATGCGCAAGCCGAGGATCG
* *
11982801 GCTCGGTCCCCCTTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCAGTCCAGTTCGATCTTAGAC
259 GCTCGATCCCCTTTGCGTGCTGTCGATCCTGCT-CTGCAACCCTC-GTCC-GTTCGATCTTAGAC
* *
11982866 TGGGAATGAACTCTGGATG
321 TGGGAATGAACTCCGTATG
* * **
11982885 CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGTTGGTGCTCAAC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTTGGTGCTCAGT
* * *
11982950 CGATCAGAGAGGCATAATGCACAAGCCGAGGATTAGC-CAGGTCCCCCGTTGCATGCTGTCGGTC
66 CGATCGGAGAGGCATAATGCGCAAGCCGAGGATTAGCTC-GATCCCCCG-TGCATGCTGTCGGTC
** * *
11983014 CCGTTGCCACAACCCTCGGTCCGACTACGGCTTGGACATGGAATGAACTCCATATGCCTAAGCCA
129 CCGTTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * * * * *
11983079 ACCCACAAAATGGGCGTGCGGGCGCTTAACCGGTCGGAAAGGCAGAATGCGCAAGCCGGGGATCG
194 ACCCACGAAACGGGCGTGCGGACGCTTAATCGATCAGAGAGGCAGAATGCGCAAGCCGAGGATCG
* * * * * * *
11983144 G-TCCGATCCCTTTTACGTGCCGTCGTTCCTGCTATCGTAACCCTCGGTCCGATCTGATCTTAGA
259 GCT-CGATCCCCTTTGCGTGCTGTCGATCCTGCTCT-GCAACCCTC-GTCCGTTC-GATCTTAGA
*
11983208 CTGGGAATGAACTCCATATG
320 CTGGGAATGAACTCCGTATG
* * *
11983228 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCTACAAAATGAGCGTG-TGAGTGCTTAG
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTTG-GTGCTCAG
* * * * * * * * *
11983292 TAGACCGGAGAGGCATAATACGTAAGCTGGGGATCAGCTCGAT-CCCC-TGCTATGTTGTGCCGA
65 TCGATCGGAGAGGCATAATGCGCAAGCCGAGGATTAGCTCGATCCCCCGTGC-ATGCTGT--CGG
* * * * *
11983355 TCCCGCTACCACAACCCTCGATCCGACTGGGGCTTAGACTTGGAATGAACTCCCTATACCTAAGC
127 TCCCGTTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * * * *
11983420 CAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGAGGCATAATGCGTAAGCC
192 CAACCCACGAAACGGGCGTGCGGACGCTTAATCGATCAGAGAGGCAGAATGCGCAAGCC
11983479 AGGGATCAGC
Statistics
Matches: 770, Mismatches: 146, Indels: 41
0.80 0.15 0.04
Matches are distributed among these distances:
340 3 0.00
341 6 0.01
342 234 0.30
343 469 0.61
344 58 0.08
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (339 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTTGGTGCTCAGT
CGATCGGAGAGGCATAATGCGCAAGCCGAGGATTAGCTCGATCCCCCGTGCATGCTGTCGGTCCC
GTTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACGGGCGTGCGGACGCTTAATCGATCAGAGAGGCAGAATGCGCAAGCCGAGGATCGGC
TCGATCCCCTTTGCGTGCTGTCGATCCTGCTCTGCAACCCTCGTCCGTTCGATCTTAGACTGGGA
ATGAACTCCGTATG
Found at i:11983238 original size:26 final size:26
Alignment explanation
Indices: 11983202--11983254 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11983192 CCGATCTGAT
11983202 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
11983228 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11983254 C
1 C
11983255 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11983484 original size:159 final size:159
Alignment explanation
Indices: 11983227--11983666 Score: 463
Period size: 159 Copynumber: 2.8 Consensus size: 159
11983217 AACTCCATAT
* * * * * * * * * * *
11983227 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCTACAAAATGAGCGTGTGAGTGCTTAG
1 GCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
* * ** * * * *
11983292 TAGACCGGAGAGGCATAATACGTAAGCTGGGGATCAGCTCGATCCCCTGCTATGTTG-TGCCGAT
66 TCGACCAGAGAGGCATAATACGTAAGCCAGGGATCAGCCCGATCCCCCGCTACG-TGCTACCGAT
*
11983356 CCCGCTACCACAACCCTCGATCCGACTGGG
130 CCCGCTACCACAACCCTCGATCCGACTGAG
* *
11983386 GCTTAGACTTGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
* * *
11983451 TCGACCAGAGAGGCATAATGCGTAAGCCAGGGATCAGCCCGGTCCCCCGCTACGTGCTACCTATC
66 TCGACCAGAGAGGCATAATACGTAAGCCAGGGATCAGCCCGATCCCCCGCTACGTGCTACCGATC
* *
11983516 CCGCTGCCACAACCCTCGGTCCGACTGAG
131 CCGCTACCACAACCCTCGATCCGACTGAG
* * * * * *
11983545 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCTACCCATGAAACGGGCGTGCGGGAGCTCAA
1 GCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
* * * * * * ** *
11983610 TCGATC-GAAAAGGCAGAATGCGCAGGCCAGGGATTGGCCCGATCCCCC-CTGCGTGCT
66 TCGACCAG-AGAGGCATAATACGTAAGCCAGGGATCAGCCCGATCCCCCGCTACGTGCT
11983667 GTCGATCCTA
Statistics
Matches: 236, Mismatches: 43, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
158 11 0.05
159 225 0.95
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
TCGACCAGAGAGGCATAATACGTAAGCCAGGGATCAGCCCGATCCCCCGCTACGTGCTACCGATC
CCGCTACCACAACCCTCGATCCGACTGAG
Found at i:11983740 original size:26 final size:26
Alignment explanation
Indices: 11983704--11983754 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11983694 CTAGTCTGAT
*
11983704 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11983730 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
11983755 ACCTAAGTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11984274 original size:184 final size:185
Alignment explanation
Indices: 11983913--11984274 Score: 498
Period size: 185 Copynumber: 2.0 Consensus size: 185
11983903 TCCGGCTGGG
* *
11983913 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCTACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * **
11983978 TCGACCGAAGAGGCAGAATGCGCAAGTCGGGGAATGGCCCGATTCCCCCCTGTGTGCTATCGATC
66 TCAACCGAAGAGGCAGAATGCACAAGTCGGGGAATAGCCCGAGTCCCCCCTACGTGCTATCGATC
* *
11984043 CTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACCCCATAT
131 CTGCTACCACAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACCCCATAT
* * * * *
11984098 GCTTGGACATGGAATAAACTCCGTATGCCTAAGGCAATCCTCGAAACGAGCGTGCGGGTGTTCA-
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * *
11984162 TCTAACTGGAGAGGCAGAATGCACAAG-CTGGGG-ATAAGCCCG-GTCCCCCCTACGTGCTGTCG
66 TC-AACCGAAGAGGCAGAATGCACAAGTC-GGGGAAT-AGCCCGAGTCCCCCCTACGTGCTATCG
*
11984224 ATCCTGCTACCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAAC
128 ATCCTGCTACCACAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAAC
11984275 TTCGTATGCC
Statistics
Matches: 155, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
184 69 0.45
185 86 0.55
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (185 bp):
GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
TCAACCGAAGAGGCAGAATGCACAAGTCGGGGAATAGCCCGAGTCCCCCCTACGTGCTATCGATC
CTGCTACCACAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACCCCATAT
Found at i:11984442 original size:159 final size:158
Alignment explanation
Indices: 11984103--11984447 Score: 376
Period size: 158 Copynumber: 2.2 Consensus size: 158
11984093 CATATGCTTG
* * *
11984103 GACATGGAATAAACTCCGTATGCCTAAGGCAATCCTCGAAACGAGCGTGCGGGTGTTCATCTAAC
1 GACATGGAATGAACTCCGTATGCCTAAGGCAATCCTCGAAACGAGCGTGCGGGCGTCCATCTAAC
* * **
11984168 TGGAGAGGCAGAATGCACAAGCTGGGGATAAGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTA
66 CGAAGAGGCAGAATGCACAAGCTGGGGATAAGCCCGGTCCCCCCTACGTGCTGTCGATCCCACTA
* *
11984233 CCACAACCCTCGGTCCGATCTGATCTTA
131 CCACAACCCTCGGTCCGAACTGACCTTA
* * * * *
11984261 GAC-TGGGAATGAACTTCGTATGCCTAAGTCAA-CCTATGAATCGAGCGTGCGGGCGCTCCGTC-
1 GACAT-GGAATGAACTCCGTATGCCTAAGGCAATCCT-CGAAACGAGCGTGCGGGCG-TCCATCT
* * * * * *
11984323 AGCCGAAGAGGCATAATGCGCAAG-TCGGGGATTAGCCTGGTCCCCCTCTGCGTGCTGTCGATCC
63 AACCGAAGAGGCAGAATGCACAAGCT-GGGGATAAGCCCGGTCCCCC-CTACGTGCTGTCGATCC
* * * *
11984387 CATTGCCACAACCCTTGGTCC-AACTAGGCCTTA
126 CACTACCACAACCCTCGGTCCGAACT-GACCTTA
*
11984420 GACATGGAATGAACTCCCTATGCCTAAG
1 GACATGGAATGAACTCCGTATGCCTAAG
11984448 CTAACCAACG
Statistics
Matches: 154, Mismatches: 26, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
157 5 0.03
158 83 0.54
159 65 0.42
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
GACATGGAATGAACTCCGTATGCCTAAGGCAATCCTCGAAACGAGCGTGCGGGCGTCCATCTAAC
CGAAGAGGCAGAATGCACAAGCTGGGGATAAGCCCGGTCCCCCCTACGTGCTGTCGATCCCACTA
CCACAACCCTCGGTCCGAACTGACCTTA
Found at i:11984612 original size:26 final size:26
Alignment explanation
Indices: 11984575--11984626 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11984565 CAGTTCAATT
*
11984575 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
11984601 TTAGAC-GTGGAATGAACTCCGTATGC
1 TTAGACTG-GGAATGAACTCCGTATGC
11984627 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:11984768 original size:183 final size:184
Alignment explanation
Indices: 11984416--11984775 Score: 438
Period size: 183 Copynumber: 2.0 Consensus size: 184
11984406 CCAACTAGGC
* ** *
11984416 CTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCAACGAAACAAGTTTGTGGGCACTCAAC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACAAGCGTGCGGGCACTCAAC
* * * * *
11984481 CGGCCAGAGAGGTAAAATGTGCAAGTCAGGGATCGACCCGGTCCCCCCTGCGTGCTACTGATCCT
66 CAGCCAAAGAGGTAAAATGCGCAAGTCAGGGATCGACCCGGTCCCCCCTACGTACTACTGATCCT
* * * *
11984546 GCTGCCGCAACCCTCGGTCCAGTTCAATTTTAGACTGGGAATGAACTTCGTATG
131 GCTACCGCAACCCTCGGTCCAGTCCAATCTTAAACTGGGAATGAACTTCGTATG
* * * * * **
11984600 CTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACAAGCGTGCGGGCACTCAAC
* * *
11984665 CAGCTAAAGAGGT-AGATGCGCAAGTC-GAGGATCGACCCGGTCCCCCCTACGTACT-GTCGATC
66 CAGCCAAAGAGGTAAAATGCGCAAGTCAG-GGATCGACCCGGTCCCCCCTACGTACTACT-GATC
* * **
11984727 TTGCTACCGGAACCCTCGGTCTGGTCCAATCTTAAACTGGGAATGAACT
129 CTGCTACCGCAACCCTCGGTCCAGTCCAATCTTAAACTGGGAATGAACT
11984776 CTGCATGCCT
Statistics
Matches: 147, Mismatches: 27, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
182 2 0.01
183 81 0.55
184 64 0.44
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (184 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACAAGCGTGCGGGCACTCAAC
CAGCCAAAGAGGTAAAATGCGCAAGTCAGGGATCGACCCGGTCCCCCCTACGTACTACTGATCCT
GCTACCGCAACCCTCGGTCCAGTCCAATCTTAAACTGGGAATGAACTTCGTATG
Found at i:11984839 original size:500 final size:499
Alignment explanation
Indices: 11983887--11985162 Score: 1428
Period size: 500 Copynumber: 2.5 Consensus size: 499
11983877 ATCGGTCCTG
* ** * ** *
11983887 CTACCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCT-AC
1 CTACCACAACCCTCGGTCCAACAGGACCTTAGACATGGAATGAACTCCCTATGCCTAAG-CTAAC
* ** * * * *
11983951 CCACGAAACGAGCGTGCGGGTGCTCAGTCGACCGAAGAGGCAGAATGCGCAAGTCGGGGAAT-GG
65 CCACGAAACGAGCATGCGGGCACTCAGCCGGCCGAAGAGGTAGAATGCGCAAGTCGGGG-ATCGA
* * * *
11984015 CCCGATTCCCCCCTGTGTGCTA-TCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGA
129 CCCG-GTCCCCCCTGCGTGCTACT-GATCCTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGA
* * * * * * *
11984079 CTAGGAATGAACCCCATATGCTTGGACATGGAATAAACTCCGTATGCCTAAGGCAATCC-TCGAA
192 CTGGGAATGAA-CTCGTATGCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCAT-GAA
* * * ** *
11984143 ACGAGCGTGCGGGTGTTCATCTAACTGGAGAGGCAGAATGCACAAGCTGGGGATAAGCCCGGTCC
254 ACGAGCGTGCGGGTGCTCAACCAACTAAAGAGGCAGAATGCACAAGCTGAGGATAAGCCCGGTCC
* ** *
11984208 CCCCTACGTGCTGTCGATCCTGCTACCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGA
319 CCCCTACGTACTGTCGATCCTGCTACCACAACCCTCGGTCCGATCCAATCTTAAACTGGGAATGA
* * * *
11984273 ACTTCGTATGCCTAAGTCAACCTATGAATCGAGCGTGCGGGCGCTCCGTCAGCCGAAGAGGCATA
384 ACTTCGCATGCCTAAGTCAACCTATGAAACGAGCGTGCGGGCGCTCAGCCAGCCGAAGAGGCATA
* * * * *
11984338 ATGCGCAAGTCGGGGATTAGCCTGGTCCCCCTCTGCGTGCTGTC-GATCCCA
449 ATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTACTGCCAG-TCCCA
* * *
11984389 TTGCCACAACCCTTGGTCCAACTAGG-CCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAAC
1 CTACCACAACCCTCGGTCCAAC-AGGACCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAAC
* * ** * * * * *
11984453 CAACGAAACAAGTTTGTGGGCACTCAACCGGCC-AGAGAGGTAAAATGTGCAAGTCAGGGATCGA
65 CCACGAAACGAGCATGCGGGCACTCAGCCGGCCGA-AGAGGTAGAATGCGCAAGTCGGGGATCGA
* *
11984517 CCCGGTCCCCCCTGCGTGCTACTGATCCTGCTGCCGCAACCCTCGGTCCAGT-TCAATTTTAGAC
129 CCCGGTCCCCCCTGCGTGCTACTGATCCTGCTGCCGCAACCCTCGGTCCAGTCT-GATCTTAGAC
11984581 TGGGAATGAACTTCGTATGCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC
193 TGGGAATGAAC-TCGTATGCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC
* * * *
11984646 GAGCGTGCGGGTGCTCAACCAGCTAAAGAGGTAG-ATGCGCAAG-TCGAGGAT-CGACCCGGTCC
256 GAGCGTGCGGGTGCTCAACCAACTAAAGAGGCAGAATGCACAAGCT-GAGGATAAG-CCCGGTCC
* ** * *
11984708 CCCCTACGTACTGTCGATCTTGCTACCGGAACCCTCGGTCTGGTCCAATCTTAAACTGGGAATGA
319 CCCCTACGTACTGTCGATCCTGCTACCACAACCCTCGGTCCGATCCAATCTTAAACTGGGAATGA
* * *
11984773 AC-TCTGCATGCCTATGTCAACGC-ATGAAACGAGCGTGCGGGCGCTGAGCCAGCCGGAGAGGCA
384 ACTTC-GCATGCCTAAGTCAAC-CTATGAAACGAGCGTGCGGGCGCTCAGCCAGCCGAAGAGGCA
* * * *
11984836 TAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGTGTACTGCCAGTCCCG
447 TAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTACTGCCAGTCCCA
* * * * *
11984889 CTACCACAACCCTCGGTCTAGCGGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTACCACAACCCTCGGTCCAACAGGACCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACC
* * * * * * *
11984954 CACGAAACGGGCATCCGGGCACTCAGCCAGTCGAAAAAGTAGAATGCGCAAG-CTGGGGATCAAC
66 CACGAAACGAGCATGCGGGCACTCAGCCGGCCGAAGAGGTAGAATGCGCAAGTC-GGGGATCGAC
* * * *
11985018 CCGGTCCCCCCTGCGTGCTGCCGATCCTGTTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACAG
130 CCGGTCCCCCCTGCGTGCTACTGATCCTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTG
* * *
11985083 GGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
195 GGAATGAACTC-GTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA
*
11985148 GCGTGCGGGCGCTCA
258 GCGTGCGGGTGCTCA
11985163 GCCGACCAGA
Statistics
Matches: 648, Mismatches: 107, Indels: 40
0.82 0.13 0.05
Matches are distributed among these distances:
499 10 0.02
500 398 0.61
501 139 0.21
502 99 0.15
503 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (499 bp):
CTACCACAACCCTCGGTCCAACAGGACCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACC
CACGAAACGAGCATGCGGGCACTCAGCCGGCCGAAGAGGTAGAATGCGCAAGTCGGGGATCGACC
CGGTCCCCCCTGCGTGCTACTGATCCTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGG
GAATGAACTCGTATGCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCG
TGCGGGTGCTCAACCAACTAAAGAGGCAGAATGCACAAGCTGAGGATAAGCCCGGTCCCCCCTAC
GTACTGTCGATCCTGCTACCACAACCCTCGGTCCGATCCAATCTTAAACTGGGAATGAACTTCGC
ATGCCTAAGTCAACCTATGAAACGAGCGTGCGGGCGCTCAGCCAGCCGAAGAGGCATAATGCGCA
AGCCGGGGATCAGCCCGGTCCCCCTCTGCGTACTGCCAGTCCCA
Found at i:11984943 original size:159 final size:156
Alignment explanation
Indices: 11984599--11985093 Score: 406
Period size: 159 Copynumber: 3.1 Consensus size: 156
11984589 AACTTCGTAT
* *
11984599 GCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGAC-TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * **
11984664 CCAGCTAAAGAGGTAGATGCGCAAGTCGAGGATCGACCCGGTCCCCCCTACGTACTGTCGATCTT
65 CCAGCCAAAGAGGTAGATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACGTACTGCCGATCCC
** *
11984729 GCTACCGGAACCCTCGGTCTGGTCCAA
130 GCTACCACAACCCTCGGTCTAGTCCAA
* * * * * * *
11984756 TCTTAAACTGGGAATGAACTCTGC-ATGCCTATGTCAACGCATGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACT-GGAATGAACTC-CCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* ** * * * **
11984820 GCCAGCCGGAGAGGCATA-ATGTGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGTGTACTGCC-A
64 ACCAGCCAAAGAGG--TAGATGCGCAAGCCGAGGATCGACCCGGTCCCCC-CTACGTACTGCCGA
**
11984883 GTCCCGCTACCACAACCCTCGGTCTAG-CGGGA
126 -TCCCGCTACCACAACCCTCGGTCTAGTC-CAA
* * * * * *
11984915 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATCCGGGCACTCAG
1 GCTTAGAC-TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * * * * *
11984980 CCAGTCGAAA-AAGTAGAATGCGCAAGCTGGGGATCAACCCGGTCCCCCCTGCGTGCTGCCGATC
65 CCAG-CCAAAGAGGTAG-ATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACGTACTGCCGATC
* * * * * **
11985044 CTGTTGCCGCAACCCTCGGTCCAGTCTGA
128 CCGCTACCACAACCCTCGGTCTAGTCCAA
* *
11985073 TCTTAGACAGGGAATGAACTC
1 GCTTAGAC-TGGAATGAACTC
11985094 TGTATGCTTA
Statistics
Matches: 267, Mismatches: 57, Indels: 27
0.76 0.16 0.08
Matches are distributed among these distances:
156 1 0.00
157 64 0.24
158 82 0.31
159 117 0.44
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (156 bp):
GCTTAGACTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
CAGCCAAAGAGGTAGATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACGTACTGCCGATCCCG
CTACCACAACCCTCGGTCTAGTCCAA
Found at i:11985103 original size:26 final size:26
Alignment explanation
Indices: 11985074--11985126 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11985064 CCAGTCTGAT
*
11985074 CTTAGACAGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
11985100 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
11985126 C
1 C
11985127 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:11986295 original size:158 final size:157
Alignment explanation
Indices: 11986014--11986420 Score: 526
Period size: 158 Copynumber: 2.6 Consensus size: 157
11986004 ACGAGCGTTG
* * * * * *
11986014 AGCCGGTCGAAGAGGCATAATGCACAAGCCGAGGATCGGCTCGGTCCCCCTCTGCGTGCTGCCGG
1 AGCCGGTCGGAGAGGCAGAATGCACAAGCCG-GGATCGGCCCGATCCCCC-CTGCGTGCTGTCGA
* *
11986079 TCCCCCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
64 TCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
*
11986144 CAACCCACGAAACGGGCGTGCGGGTGCTC
129 CAACCCACGAAACAGGCGTGCGGGTGCTC
* *
11986173 AGCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGAT
1 AGCCGGTCGGAGAGGCAGAATGCACAAGCC-GGGATCGGCCCGATCCCCCCTGCGTGCTGTCGAT
* ** * *
11986238 CCCGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCTTATGCTTAAGCC
65 CCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* *
11986303 AACCCATGAAACAGGCGTGTGGGTGCTC
130 AACCCACGAAACAGGCGTGCGGGTGCTC
* * * * * * *
11986331 AGTCGGCCGGAGAGGTAGAATGCACAAGCTGGGGATTGGCCCGATCCCCCATGCGTGCTATCGAT
1 AGCCGGTCGGAGAGGCAGAATGCACAAGC-CGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGAT
* * *
11986396 CCTACTGTCGCAACCCTCGGTCCGA
65 CCCACTGCCACAACCCTCGGTCCGA
11986421 TCCAATCTTA
Statistics
Matches: 215, Mismatches: 31, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
158 172 0.80
159 42 0.20
160 1 0.00
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.18
Consensus pattern (157 bp):
AGCCGGTCGGAGAGGCAGAATGCACAAGCCGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
CCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
ACCCACGAAACAGGCGTGCGGGTGCTC
Found at i:11986478 original size:26 final size:26
Alignment explanation
Indices: 11986427--11986479 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11986417 CCGATCCAAT
*
11986427 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
11986453 CTTAGATTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
11986479 C
1 C
11986480 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11986752 original size:355 final size:342
Alignment explanation
Indices: 11986110--11986909 Score: 908
Period size: 355 Copynumber: 2.3 Consensus size: 342
11986100 TCCGACTGGG
* * * *
11986110 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCA
*
11986174 GCCGGTCGGAGAGGCAGAATGCGCAAGCCAGG-GATCGACCCGATCCCCCCTGCGTGCTGTCGAT
65 GCCGGTCAGAGAGGCAGAATGCGCAAGCC-GGAGATCGACCCGATCCCCCCTGCGTGCTGTCGAT
* * *
11986238 CCCGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCTTATGCTTAAGCC
129 CCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCC
* * *** ** * * * *
11986303 AACCCATGAAACAGGCGTGTGGGTGCTCAGTCGGCCGGAGAGGTAGAATGCACAAGCTGGGGATT
194 AACCCATAAAACACGCGTACAGGCACTCAGCCGACCGGAGAGGCAGAATGCACAAGCCGGGGATT
* *
11986368 GGCCCGATCCCCCATGCGTGCTATCGATCCTACTGTCGCAACCCTCGGTCCGATCCAATCTTAGA
259 GGCCCGATCCCCCATGCGTGCTATCGATCCTACTGCCGCAACCCTCAGTCCGATCCAATCTTAGA
11986433 CTGGGAATGAACTCCGTAT
324 CTGGGAATGAACTCCGTAT
* * * * *
11986452 GCTTAGATTGGGAATGAACTTCATATGCCTAAGTCAACCCACAAAATGAGCGTGTGGGTGCTCAA
1 GCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAG
* * * *
11986517 CCGGTCAGAGAGGCATAATGCGCATGCCGGAGATC-AGCCTGGTCCCCCTCTGCGTGCTGTCGAT
66 CCGGTCAGAGAGGCAGAATGCGCAAGCCGGAGATCGA-CCCGATCCCCC-CTGCGTGCTGTCGAT
*
11986581 CCCGCTACCGGTCCTGCTACCACGACCCTCGGTCCAGCTGGGGCTTATACATGGAATGAACT-CT
129 CCCGCT----G--C--C-A-CA--ACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCT
**
11986645 CTATGCCTAAGCCAACCCATAAAACACGCGTACAGGCACTCAGCCGACCGGAGAGGCAGAATGTG
182 -TATGCCTAAGCCAACCCATAAAACACGCGTACAGGCACTCAGCCGACCGGAGAGGCAGAATGCA
* * * * * * ** * *
11986710 TAAGCCGGGGATTGGCCTGGTCCCTTC-TGTGTGCTGTCGATCCTGTTGCCGTAACCCTCAGTCT
246 CAAGCCGGGGATTGGCCCGATCCC-CCATGCGTGCTATCGATCCTACTGCCGCAACCCTCAGTCC
* ** *
11986774 GGTCTGATCTTAGATTGGGAATGAACTCCGTAT
310 GATCCAATCTTAGACTGGGAATGAACTCCGTAT
* *
11986807 GCTTAGACTGGGGATGAAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCA
1 GCTTAGACTGGGAATG-AACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCA
* ** * *
11986872 GTCGACCAGAGAGGCAGGATGCGCAAGCCAGAGATCGA
65 GCCGGTCAGAGAGGCAGAATGCGCAAGCCGGAGATCGA
11986910 ACGGGTGGTA
Statistics
Matches: 377, Mismatches: 61, Indels: 25
0.81 0.13 0.05
Matches are distributed among these distances:
341 4 0.01
342 92 0.24
343 21 0.06
347 1 0.00
349 1 0.00
351 1 0.00
352 1 0.00
353 2 0.01
354 2 0.01
355 178 0.47
356 73 0.19
357 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.20
Consensus pattern (342 bp):
GCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAG
CCGGTCAGAGAGGCAGAATGCGCAAGCCGGAGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
CGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAA
CCCATAAAACACGCGTACAGGCACTCAGCCGACCGGAGAGGCAGAATGCACAAGCCGGGGATTGG
CCCGATCCCCCATGCGTGCTATCGATCCTACTGCCGCAACCCTCAGTCCGATCCAATCTTAGACT
GGGAATGAACTCCGTAT
Found at i:11986818 original size:26 final size:27
Alignment explanation
Indices: 11986782--11986835 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
11986772 CTGGTCTGAT
*
11986782 CTTAGATTGGGAATG-AACTCCGTATG
1 CTTAGACTGGGAATGAAACTCCGTATG
*
11986808 CTTAGACTGGGGATGAAACTCCGTATG
1 CTTAGACTGGGAATGAAACTCCGTATG
11986835 C
1 C
11986836 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 13 0.52
27 12 0.48
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATGAAACTCCGTATG
Found at i:11988865 original size:26 final size:26
Alignment explanation
Indices: 11988829--11988880 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11988819 TCAGTCCGAT
*
11988829 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
11988855 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11988881 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11995377 original size:11 final size:11
Alignment explanation
Indices: 11995361--11995396 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
11995351 CGGTTAGGCT
11995361 CTCCGGTGATG
1 CTCCGGTGATG
11995372 CTCCGGTGATG
1 CTCCGGTGATG
* *
11995383 CTTCGATGATG
1 CTCCGGTGATG
11995394 CTC
1 CTC
11995397 TGGGTGAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.11, C:0.28, G:0.31, T:0.31
Consensus pattern (11 bp):
CTCCGGTGATG
Found at i:11995500 original size:26 final size:26
Alignment explanation
Indices: 11995460--11995512 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11995450 GGCTCAAAAT
11995460 CTTAGACTGGAAATGAACACCATATG
1 CTTAGACTGGAAATGAACACCATATG
*
11995486 CTTAGACATGG-AATGAACTCCATATG
1 CTTAGAC-TGGAAATGAACACCATATG
11995512 C
1 C
11995513 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACACCATATG
Found at i:11995783 original size:158 final size:158
Alignment explanation
Indices: 11995485--11995910 Score: 409
Period size: 158 Copynumber: 2.7 Consensus size: 158
11995475 AACACCATAT
* *
11995485 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* *
11995550 CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCCTGCGAGCTATCGATCC
66 CCGACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGATCCCCCCTGCGAGCTATCGATCC
** * * *
11995615 TGCTGTCACAACCCTCGGTCTAGTCT-GA
131 CACTGCCACAACCCTCAGTCT-GGCTGGA
* * * * * *
11995643 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCTTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
11995707 GCCGGCCGAAGAGGCATAATGTGCAATC-GGGGATCGGCTCGATCCCCCTCTGCGTG-TCA-CAG
65 ACCGACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGATCCCCC-CTGCGAGCT-ATC-G
* *
11995769 GTCCCACTGCCACAACCCTCAGTCTGGCTGGG
127 ATCCCACTGCCACAACCCTCAGTCTGGCTGGA
* * * * * * *
11995801 GCTTAGACATGGAATGAACTCCTTATG---AAGCCAACCCATGAAATGGGCGTGCGGGCACTTAG
1 GCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* *** * * **
11995863 TCGGTTGGAGAGGGAGAATATGCAAGCTGGGGATCGGCTCGATCCCCC
66 CCGACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGATCCCCC
11995911 TGCTGTCGCA
Statistics
Matches: 220, Mismatches: 41, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
155 46 0.21
156 20 0.09
157 25 0.11
158 128 0.58
159 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGATCCCCCCTGCGAGCTATCGATCC
CACTGCCACAACCCTCAGTCTGGCTGGA
Found at i:11995969 original size:26 final size:26
Alignment explanation
Indices: 11995940--11995992 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11995930 CCGGTCTGAC
11995940 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGCGG-ATGAACTCCGTATG
*
11995966 CTTAGATTGCGGATGAACTCCGTATG
1 CTTAGACTGCGGATGAACTCCGTATG
11995992 C
1 C
11995993 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGGATGAACTCCGTATG
Found at i:11996358 original size:26 final size:26
Alignment explanation
Indices: 11996320--11996372 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
11996310 CCGGTCTGAT
*
11996320 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11996346 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
11996372 C
1 C
11996373 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11996714 original size:159 final size:158
Alignment explanation
Indices: 11996345--11996790 Score: 512
Period size: 159 Copynumber: 2.8 Consensus size: 158
11996335 AACTTCGTAT
* *
11996345 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** *
11996410 CCGATCGGAGAGGCAGAATGCATAAGTCGGGGATCGGTCGGAT-CCCC-CTGCGTGCTATCGATC
66 CCGATCGGAGAGGCAGAATGCACAAGTCGGGGATCGCCCGG-TCCCCCTCTGCGTGCTACCGATC
* * *
11996473 CTGCTACCGTAACCCTCGGTCGGATCCGA
130 CCGCTACCATAACCCTCGGTCCGATCCGA
* * * * * * *
11996502 TCTTAGAC-TAGGAAGGAATTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* *
11996566 GCC-AGCCGGAGAGGCATAATGCACAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTACCGA
65 GCCGA-TCGGAGAGGCAGAATGCACAAGTCGGGGATC-GCCCGGTCCCCCTCTGCGTGCTACCGA
* * *
11996630 TCCCGCTGCCATAACCCT-GGATCCGA-CTGGG
128 TCCCGCTACCATAACCCTCGG-TCCGATC-CGA
* * *
11996661 GCTTAAACATGGAATGAACTCCATATGCCTAAGCCAACCCAGGAAAC-AGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCA
* * * *
11996725 GCCGATCGAAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGGTCCCCCT-TGCGTGCTGCCGAT
65 GCCGATCGGAGAGGCAGAATGCACAAGTCGGGGATC-GCCCGGTCCCCCTCTGCGTGCTACCGAT
11996789 CC
129 CC
11996791 TACTTTCGCA
Statistics
Matches: 241, Mismatches: 38, Indels: 19
0.81 0.13 0.06
Matches are distributed among these distances:
156 2 0.01
157 85 0.35
158 27 0.11
159 125 0.52
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.29, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGATCGGAGAGGCAGAATGCACAAGTCGGGGATCGCCCGGTCCCCCTCTGCGTGCTACCGATCC
CGCTACCATAACCCTCGGTCCGATCCGA
Found at i:11996861 original size:26 final size:26
Alignment explanation
Indices: 11996820--11996872 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11996810 CCAATCCAAT
11996820 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTTCGTATG
* * *
11996846 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGAGAATGAACTTCGTATG
11996872 C
1 C
11996873 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTTCGTATG
Found at i:11997476 original size:26 final size:25
Alignment explanation
Indices: 11997447--11997497 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 25
11997437 GCTCAAACTT
11997447 TTAGACATGGAATGAACTCCATATGC
1 TTAGACATGGAATGAACTCC-TATGC
11997473 TTAGACATGGAATGAACTCCTATGC
1 TTAGACATGGAATGAACTCCTATGC
11997498 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (25 bp):
TTAGACATGGAATGAACTCCTATGC
Found at i:11997706 original size:159 final size:158
Alignment explanation
Indices: 11997471--11997758 Score: 443
Period size: 159 Copynumber: 1.8 Consensus size: 158
11997461 AACTCCATAT
*
11997471 GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 GCTTAGACATGGAAGGAACTCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
11997536 TGGCCGAAGAGGTAGAATGCACAAGCCGGGGATTGGCCCGGTCCCCCTCTGTGTGCTGCCGATCC
66 CGACCGAAGAGGCAGAATGCACAAGCCGGGGATTGGCCCGGTCCCCCACTGTATGCTGCCGATCC
11997601 CACTGGCACAACCCTCGGTCCGACTGGG
131 CACTGGCACAACCCTCGGTCCGACTGGG
* *
11997629 GCTTTGACATGGAAGGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGTGGGCGCTCA
1 GCTTAGACATGGAAGGAACT-CCTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCA
* * * *
11997693 GCCGATCGGAGAGGCAGAATGCATAAGCCGGGGATTGGCCCGGTCCCCCACTGTATGCTGTCGAT
64 GCCGACCGAAGAGGCAGAATGCACAAGCCGGGGATTGGCCCGGTCCCCCACTGTATGCTGCCGAT
11997758 C
129 C
11997759 TTGCTACTGG
Statistics
Matches: 116, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
158 19 0.16
159 97 0.84
ACGTcount: A:0.22, C:0.31, G:0.30, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAAGGAACTCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGAAGAGGCAGAATGCACAAGCCGGGGATTGGCCCGGTCCCCCACTGTATGCTGCCGATCC
CACTGGCACAACCCTCGGTCCGACTGGG
Found at i:11997850 original size:25 final size:25
Alignment explanation
Indices: 11997801--11997851 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
11997791 CCGGCTCGAT
11997801 CTTAGACTGGAATGAACTCCATATG
1 CTTAGACTGGAATGAACTCCATATG
11997826 CTTAGACATGGAATGAACTCC-TATG
1 CTTAGAC-TGGAATGAACTCCATATG
11997851 C
1 C
11997852 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 12 0.48
26 13 0.52
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:11998183 original size:25 final size:25
Alignment explanation
Indices: 11998155--11998205 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
11998145 CCGGCTCGAT
11998155 CTTAGAC-TAGAATGAACTCCGTATG
1 CTTAGACATAGAATGAACTCC-TATG
*
11998180 CTTAGACATGGAATGAACTCCTATG
1 CTTAGACATAGAATGAACTCCTATG
11998205 C
1 C
11998206 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (25 bp):
CTTAGACATAGAATGAACTCCTATG
Found at i:11998737 original size:354 final size:354
Alignment explanation
Indices: 11997447--11998645 Score: 2112
Period size: 354 Copynumber: 3.4 Consensus size: 354
11997437 GCTCAAACTT
11997447 TTAGACATGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCAC
1 TTAGAC-TGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCAC
11997512 GAAACGAGCGTGCGGGCGCTCAGCTGGCCGAAGAGGTAGAATGCACAAGCCGGGGATTGGCCCGG
65 GAAACGAGCGTGCGGGCGCTCAGCTGGCCGAAGAGGTAGAATGCACAAGCCGGGGATTGGCCCGG
*
11997577 TCCCCCTCTGTGTGCTGCCGATCCCACTGGCACAACCCTCGGTCCGACTGGGGCTTTGACATGGA
130 TCCCCCTCTGTGTGCTGCCGATCCCACTGGCACAACCCTCGGTCCGGCTGGGGCTTTGACATGGA
11997642 AGGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGTGGGCGCTCAGCCGATCGGAGAGG
195 AGGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGTGGGCGCTCAGCCGATCGGAGAGG
11997707 CAGAATGCATAAGCCGGGGATTGGCCCGGTCCCCCACTGTATGCTGTCGATCTTGCTACTGGTCC
260 CAGAATGCATAAGCCGGGGATTGGCCCGGTCCCCCACTGTATGCTGTCGATCTTGCTACTGGTCC
11997772 TCCTACCGTAACCCTCGGTCCGGCTCGATC
325 TCCTACCGTAACCCTCGGTCCGGCTCGATC
11997802 TTAGACTGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACG
1 TTAGACTGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACG
* * *
11997867 AAACGAGCGTGCGGGCGCTCAGCTGGCCGAAGAGGTAGAATGTACAAACCAGGGATTGGCCCGGT
66 AAACGAGCGTGCGGGCGCTCAGCTGGCCGAAGAGGTAGAATGCACAAGCCGGGGATTGGCCCGGT
11997932 CCCCCTCTGTGTGCTGCCGATCCCACTGGCACAACCCTCGGTCCGGCTGGGGCTTTGACATGGAA
131 CCCCCTCTGTGTGCTGCCGATCCCACTGGCACAACCCTCGGTCCGGCTGGGGCTTTGACATGGAA
11997997 GGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGTGGGCGCTCAGCCGATCGGAGAGGC
196 GGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGTGGGCGCTCAGCCGATCGGAGAGGC
*
11998062 AGAATGCATAAGCCGGGGATTGGCCCGGTCCCCCACTGTATGCTGTCGATCTTGTTACTGGTCCT
261 AGAATGCATAAGCCGGGGATTGGCCCGGTCCCCCACTGTATGCTGTCGATCTTGCTACTGGTCCT
11998127 CCTACCGTAACCCTCGGTCCGGCTCGATC
326 CCTACCGTAACCCTCGGTCCGGCTCGATC
* * *
11998156 TTAGACTAGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACA
1 TTAGACTGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACG
*
11998221 AAACGAGCGTGCGGGCGCTCAGCTGGCCGAAGAGGTAGAATGCCCAAGCCGGGGATTGGCCCGGT
66 AAACGAGCGTGCGGGCGCTCAGCTGGCCGAAGAGGTAGAATGCACAAGCCGGGGATTGGCCCGGT
11998286 CCCCCTCTGTGTGCTGCCGATCCCACTGGCACAACCCTCGGTCCGGCTGGGGCTTTGACATGGAA
131 CCCCCTCTGTGTGCTGCCGATCCCACTGGCACAACCCTCGGTCCGGCTGGGGCTTTGACATGGAA
* * * *
11998351 GGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGTAGGTGCTCAGCCGGTTGGAGAGGC
196 GGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGTGGGCGCTCAGCCGATCGGAGAGGC
* * *
11998416 AGAATGCATAAGTCGGGGATCGGCCCGGTCCCCCACTGTATGCTGTCGATCTTGCTATTGGTCCT
261 AGAATGCATAAGCCGGGGATTGGCCCGGTCCCCCACTGTATGCTGTCGATCTTGCTACTGGTCCT
11998481 CCTACCGTAACCCTCGGTCCGGCTCGATC
326 CCTACCGTAACCCTCGGTCCGGCTCGATC
* * *
11998510 TTAGACTGGAATGAACTCCGTATGCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
1 TTAGACTGGAATGAACTCCATATGCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCAC
* * ** * * ** *
11998575 GAAACGAGTGTGCGGGCGCTCAG-TCGACCTTAGAGGCAGAATGCGCAAGCCGGGGACCGGCCCA
65 GAAACGAGCGTGCGGGCGCTCAGCT-GGCCGAAGAGGTAGAATGCACAAGCCGGGGATTGGCCCG
11998639 GTCCCCC
129 GTCCCCC
11998646 CTGCATGCTG
Statistics
Matches: 809, Mismatches: 33, Indels: 4
0.96 0.04 0.00
Matches are distributed among these distances:
354 726 0.90
355 83 0.10
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (354 bp):
TTAGACTGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACG
AAACGAGCGTGCGGGCGCTCAGCTGGCCGAAGAGGTAGAATGCACAAGCCGGGGATTGGCCCGGT
CCCCCTCTGTGTGCTGCCGATCCCACTGGCACAACCCTCGGTCCGGCTGGGGCTTTGACATGGAA
GGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGTGGGCGCTCAGCCGATCGGAGAGGC
AGAATGCATAAGCCGGGGATTGGCCCGGTCCCCCACTGTATGCTGTCGATCTTGCTACTGGTCCT
CCTACCGTAACCCTCGGTCCGGCTCGATC
Found at i:11999012 original size:158 final size:154
Alignment explanation
Indices: 11998542--11999034 Score: 513
Period size: 158 Copynumber: 3.1 Consensus size: 154
11998532 TGCTTAAACA
* * *
11998542 TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGTCGACCTTA
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC-ACC-GA
*
11998607 GAGGCAGAATGCGCAAGCCGGGGACCGGCCCAGTCCCCCCTGCATGCTGTCGATCTTGCTACCGC
64 GAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGCATGCTGTCGATCTTGCTACCGC
* *
11998672 AACCCTCAATCCGATCCGATCTTAGAC
129 AACCCTCGAT-CGGTCCGATCTTAGAC
* * * * * *
11998699 TGGAAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCATTCGGGTGCTGAG-CAGACCG
1 TGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC--ACCG
* * * * * ***
11998763 AAGAGGCATAATGCGCAAGCCGGGGATCGGCCCTGTCCCCCTCTACATGCT-ACCAGTCCCACTA
63 -AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCC-CTGCATGCTGTCGA-TCTTGCTA
* * * * * **
11998827 CCACAACCCTCGGTCCGACTGGGCTTAGAC
125 CCGCAACCCTCGATCGGTCCGATCTTAGAC
* * *
11998857 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGGTCAGTCATCCAG
1 -TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCA-CC-G
* * * *
11998922 AGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCTTGCTATCG
63 AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGCATGCTGTCGATCTTGCTACCG
**
11998987 CAATGCTCGATCTGGTCCGATCTTAGAC
128 CAACCCTCGATC-GGTCCGATCTTAGAC
*
11999015 TGGGAATGACCTCCGTATGC
1 T-GGAATGAACTCCGTATGC
11999035 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 58, Indels: 23
0.77 0.17 0.07
Matches are distributed among these distances:
157 28 0.11
158 209 0.79
159 29 0.11
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (154 bp):
TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCACCGAGA
GGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGCATGCTGTCGATCTTGCTACCGCAA
CCCTCGATCGGTCCGATCTTAGAC
Found at i:11999037 original size:26 final size:26
Alignment explanation
Indices: 11999008--11999060 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11998998 CTGGTCCGAT
*
11999008 CTTAGACTGGGAATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
11999034 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
11999060 C
1 C
11999061 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11999210 original size:512 final size:508
Alignment explanation
Indices: 11998172--11999301 Score: 1168
Period size: 512 Copynumber: 2.2 Consensus size: 508
11998162 TAGAATGAAC
* *
11998172 TCCGTATGCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCACAAAACGAGCGTGCGGG
1 TCCG-ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGG
* * * * * * ***
11998236 CGCTCAGCTGGCCGAAGAGGTAGAATGCCCAAGCCGGGGATTGGCCCGGTCCCCCTCTGTGTGCT
65 TGCTAAGC-GACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACATGCT
* ** * *
11998301 GCCGATCCCACTGGCACAACCCTCGGTCCGGCTGGGGCTTTGACATGGAAGGAACTCCCTATGCC
129 ACCGATCCCACTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAAGGAACTCCCTATGCC
* * * * ** * *
11998366 TAAGCCAACCCACGAAACAGGCGTGTAGGTGCTCAGCCGGTTGGAGAGGCAGAATGCATAAGTCG
194 TAAGCCAACCCACGAAACAGACGTGCAGGCGCTCAGCCGATCAGAGAGGCAGAATGCACAAGCCG
* * * *
11998431 GGGATCGGCCCGGTCCCCCACTGTATGCTGTCGATCTTGCTATTGGTCCTCCTACCGTAACCCTC
259 GGGATCAGCCCGGTCCCCCACTGCATGCTGTCGATCTTGCTATTCGTCATCCTA-CG-AACCCTC
11998496 GGTCCGGCTCGATCTTAGACTGGAATGAACTCCGTATGCTTAAACATGGAATGAACTCCGTATGC
322 GGT-C--CTCGATCTTAGACTGGAATGAACTCCGTATGCTTAAACATGGAATGAACTCCGTATGC
* * * ** **
11998561 CTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGTCGACCTTAGAGGCAGAATGCGCAAGCC
384 CTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAGGCAGAATGCGCAAGCC
* * * ** * *
11998626 GGGGACCGGCCCAGTCCCCCCTGCATGCTGTCGATCTTGCTACCGCAACCCTCAATCCGA
449 GAGGACCAGCCCAGTCCCCCCTACATGCTGTCGATCCCGCTACCGCAACCCACAATCCCA
* * *
11998686 TCCGAT-CTTAGAC-TGGAAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCATTCGGG
1 TCCGATGCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGG
* * *
11998749 TGCTGAGCAGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCTGTCCCCCTCTACATGCT
65 TGCTAAGC-GACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACATGCT
*
11998814 ACC-AGTCCCACTACCACAACCCTCGGTCCGACT-GGGCTTAGACATGGAATGAACTCCCTATGC
129 ACCGA-TCCCACTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAAGGAACTCCCTATGC
* * * *
11998877 CTAAGCCAACCCACGAAAC-GAACGTGCGGGCGGTCAGTC-ATCCAGAGAGGCAGAATGCGCAAG
193 CTAAGCCAACCCACGAAACAG-ACGTGCAGGCGCTCAGCCGAT-CAGAGAGGCAGAATGCACAAG
* * *
11998940 CCGGGGATCAGCCCGGTCCCCC-CTGCGTGCTGTCGATCTTGCTA-TCG-CAATGCT-CG-A-TC
256 CCGGGGATCAGCCCGGTCCCCCACTGCATGCTGTCGATCTTGCTATTCGTC-ATCCTACGAACCC
* * *
11998999 T-GGT-C-CGATCTTAGACTGGGAATGACCTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATG
320 TCGGTCCTCGATCTTAGACT-GGAATGAACTCCGTATGCTTAAACAT-GGAATGAACTCCGTATG
* * * * *
11999060 CCTAAGTCAACCAACGAAACGAGCGTGTGGGCG-TACAACCGACCAGAGAGGTATAATGTGCAAG
383 CCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCT-CAACCGACCAGAGAGGCAGAATGCGCAAG
* * * *
11999124 CCGAGGATCAGCCC-GATCCCCCTCTACGTGCTGTCGATCCCGCTATCGGTCTTACTGCCACAA-
447 CCGAGGACCAGCCCAG-TCCCCC-CTACATGCTGTCGATCCCGCTA-CCG-C-AAC--CCACAAT
11999187 CGCTCA
505 C-C-CA
* * *
11999193 TCCAGTTGGGGCTTAGACATAGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGT
1 TCC-GAT---GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT-T
* * *
11999258 -GGGTGCTCAATCGACCGGAGAGGCAGAATACGCAAGCCGGGGAT
61 CGGGTGCT-AAGCGACCGAAGAGGCAGAATGCGCAAGCCGGGGAT
11999302 TGGCTCGATT
Statistics
Matches: 511, Mismatches: 79, Indels: 54
0.79 0.12 0.08
Matches are distributed among these distances:
499 15 0.03
500 106 0.21
501 18 0.04
502 2 0.00
503 1 0.00
504 5 0.01
505 3 0.01
506 7 0.01
507 4 0.01
508 4 0.01
509 1 0.00
510 5 0.01
511 25 0.05
512 194 0.38
513 117 0.23
514 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (508 bp):
TCCGATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGT
GCTAAGCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACATGCTAC
CGATCCCACTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAAGGAACTCCCTATGCCTA
AGCCAACCCACGAAACAGACGTGCAGGCGCTCAGCCGATCAGAGAGGCAGAATGCACAAGCCGGG
GATCAGCCCGGTCCCCCACTGCATGCTGTCGATCTTGCTATTCGTCATCCTACGAACCCTCGGTC
CTCGATCTTAGACTGGAATGAACTCCGTATGCTTAAACATGGAATGAACTCCGTATGCCTAAGCC
AACCAACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAGGCAGAATGCGCAAGCCGAGGACC
AGCCCAGTCCCCCCTACATGCTGTCGATCCCGCTACCGCAACCCACAATCCCA
Found at i:11999462 original size:129 final size:129
Alignment explanation
Indices: 11999214--11999463 Score: 295
Period size: 129 Copynumber: 1.9 Consensus size: 129
11999204 CTTAGACATA
* * ** *
11999214 GAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAATCGACCGGAGA
1 GAATGAACTTCGTATGCCTAAGCCAAACCACGAAACGAGCATGTGGGCACTCAACCGACCGGAGA
* * * * * *
11999279 GGCAGAATACGCAAGCCGGGGATTGGCTCGATTCCCTCCTGCATGCTACTGGTCCTACTACTGG
66 GGCAGAATACGCAAGCCGGGGATCGACCCGATCCCCTCCTGCATACTACCGGTCCTACTACTGG
* * * * * *
11999343 GAATGAACTTTGTATGCCTAAGTCAAACCATGAAGCGAGCATGTGGGCACTGAGCCGACCGGAGA
1 GAATGAACTTCGTATGCCTAAGCCAAACCACGAAACGAGCATGTGGGCACTCAACCGACCGGAGA
* * * *
11999408 GGCATAATGCGTAAGCCGGGGATCGACCCGATCCCC-CTCTGCGTACTACCGGTCCT
66 GGCAGAATACGCAAGCCGGGGATCGACCCGATCCCCTC-CTGCATACTACCGGTCCT
11999464 GCTGCCACAA
Statistics
Matches: 99, Mismatches: 21, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
128 1 0.01
129 98 0.99
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (129 bp):
GAATGAACTTCGTATGCCTAAGCCAAACCACGAAACGAGCATGTGGGCACTCAACCGACCGGAGA
GGCAGAATACGCAAGCCGGGGATCGACCCGATCCCCTCCTGCATACTACCGGTCCTACTACTGG
Found at i:11999680 original size:26 final size:26
Alignment explanation
Indices: 11999644--11999702 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
11999634 CTCGGTTCAG
*
11999644 TCCG-ATG-TTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAA
*
11999668 TCCGTATGCTTAGACTGGGGATGAAA
1 TCCGTATGCTTAGACTGGGAATGAAA
11999694 TCCGTATGC
1 TCCGTATGC
11999703 ATAAGTCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 24 0.77
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
TCCGTATGCTTAGACTGGGAATGAAA
Found at i:12000762 original size:26 final size:26
Alignment explanation
Indices: 12000726--12000776 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12000716 CGGTTAGATC
* *
12000726 TTAGATTGGGAATGAACTCTGTATGG
1 TTAGATAGGGAATGAACTCCGTATGG
12000752 TTAGATAGGGAATGAACTCCGTATG
1 TTAGATAGGGAATGAACTCCGTATG
12000777 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.10, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGATAGGGAATGAACTCCGTATGG
Found at i:12000986 original size:26 final size:26
Alignment explanation
Indices: 12000935--12000987 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12000925 CTGATCCGAT
* **
12000935 CTTAGATAGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCATATG
*
12000961 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
12000987 C
1 C
12000988 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:12001149 original size:26 final size:26
Alignment explanation
Indices: 12001120--12001172 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12001110 CCGGTCCGAT
* *
12001120 CTTAGATTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACGCCGTATG
**
12001146 CTTAGACTGGGGATGAACGCCGTATG
1 CTTAGACTGGAAATGAACGCCGTATG
12001172 C
1 C
12001173 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACGCCGTATG
Found at i:12001245 original size:185 final size:185
Alignment explanation
Indices: 12000903--12001245 Score: 454
Period size: 185 Copynumber: 1.9 Consensus size: 185
12000893 CTGCTACTAG
* * * *
12000903 TCCTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGATAGGGAATGAACTCTGTATGCTTAGAC
1 TCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGATAGGAAATGAACTCCGTATGCTTAGAC
* * * * * **
12000968 ATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAATCGGCTGG
66 ATGGAATGAACGCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACCGACCAG
*
12001033 AGAGGCAGAATGCGCAAGCTAGGGATCGGCTCAGTCTCCCCTTGCATGCTGTCGA
131 AGAGACAGAATGCGCAAGCTAGGGATCGGCTCAGTCTCCCCTTGCATGCTGTCGA
* *
12001088 TCCTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGATTGGAAATGAACTCCGTATGCTTAGAC
1 TCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGATAGGAAATGAACTCCGTATGCTTAGAC
* * * * *
12001153 -TGGGGATGAACGCCGTATGCCTAAGTCAACCTACGAAACGAGCGTACGGGCGCTCAGCCGACCA
66 AT-GGAATGAACGCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACCGACCA
* * * * *
12001217 GAGAGATAGGATGTGGAAGCTGGGGATCG
130 GAGAGACAGAATGCGCAAGCTAGGGATCG
12001246 AACGGGTCGT
Statistics
Matches: 133, Mismatches: 24, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
184 1 0.01
185 132 0.99
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (185 bp):
TCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGATAGGAAATGAACTCCGTATGCTTAGAC
ATGGAATGAACGCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACCGACCAG
AGAGACAGAATGCGCAAGCTAGGGATCGGCTCAGTCTCCCCTTGCATGCTGTCGA
Found at i:12002272 original size:159 final size:158
Alignment explanation
Indices: 12001855--12002293 Score: 449
Period size: 159 Copynumber: 2.8 Consensus size: 158
12001845 AACTCCGTAT
* *
12001855 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
12001920 CCGGCTGGAGAGGCAGAATGCGCAAGCTGGGGATC-ACCCCGATCCCCCCTGTGTGCTGTCGATC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCTGGTCCCCCCTGCGTGCTGTCGATC
* ** *
12001984 CTACTGCTGCAACCCTCAGTTTGGTCTGA
130 CCACTGCCACAACCCTCAGTTTGGTCGGA
* * * * * * * *
12002013 TCTTAGAC-TGGGAATGAAATTCGTATGCATAAG-TCAACTCATGAAACTAGCGTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * *
12002076 AGCCGACCGAAGAGGTAAAATGCACAAGCCGAGGATCGACCTGGTCCCCCTCTACGTGCTGTCGG
64 AGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCC-CTGCGTGCTGTCGA
* *
12002141 TCCCATTGCCACAACCCTC-GATTTGGAT-GGG
128 TCCCACTGCCACAACCCTCAG-TTTGG-TCGGA
* * *
12002172 GCTTAGACATGGAATGAACTCCCTATACCTAAGCTAACCCACGAAACGAACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
12002237 CTGGCCAAAGAGGCAGAATGCGTAAGCCGGGGATCG-GCTCGGTCCCCCCTGCGTGCT
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCT-GGTCCCCCCTGCGTGCT
12002294 ACCAATCCTA
Statistics
Matches: 222, Mismatches: 50, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
157 1 0.00
158 99 0.45
159 119 0.54
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCCTGCGTGCTGTCGATCC
CACTGCCACAACCCTCAGTTTGGTCGGA
Found at i:12003112 original size:159 final size:158
Alignment explanation
Indices: 12002699--12003114 Score: 437
Period size: 159 Copynumber: 2.6 Consensus size: 158
12002689 AACTCCGTAT
* * * **
12002699 GCTTAGACATGGATTGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGAGCGGGCTTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
12002764 CCGG-CCGAAAAGGCAGAATACGTAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATC
66 CCGGTCAG-AGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCCGCGCGCTGTCGATC
* ** *
12002828 TTGCTACTGCAACCCTCGGTCTGATCCGA
130 CTGCTACCACAACCCTCGGTCTGATCAGA
* * * * * *
12002857 TCTTAGA-TTGGAAATGAACTCCGTATGCCCAAGTCAACCCACGAAACGAGCGTGCGAGCGCTGA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
12002921 GCC-TTCCTGAGAGGCATAATGTGCAAGTCGGGGATTGGGCTGGTCCCCCTCCGCGCGCTGTC-A
65 GCCGGT-CAGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCC-CCGCGCGCTGTCGA
* *
12002984 GTCCTGCTGCCACAACCCTCGGTCTGA-CTAGG
128 -TCCTGCTACCACAACCCTCGGTCTGATC-AGA
* * * *
12003016 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGGAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
12003081 CCGGTCAGAGAGGCAGAATGCGCAAGCCGGGGAT
66 CCGGTCAGAGAGGCAGAATGCGCAAGCCGGGGAT
12003115 CGACTTGATC
Statistics
Matches: 206, Mismatches: 44, Indels: 15
0.78 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 86 0.42
159 113 0.55
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCAGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCCGCGCGCTGTCGATCC
TGCTACCACAACCCTCGGTCTGATCAGA
Found at i:12003204 original size:26 final size:26
Alignment explanation
Indices: 12003175--12003227 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12003165 TCGGTCCGAT
*
12003175 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12003201 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
12003227 C
1 C
12003228 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12004441 original size:170 final size:169
Alignment explanation
Indices: 12004062--12004442 Score: 399
Period size: 170 Copynumber: 2.2 Consensus size: 169
12004052 CGTACTGTCG
* ** *
12004062 CAACCCTCAGTCTAGTCTGATCTTAGACTAGGAATGAACTCTGTATGCATAAGTCAACCCACGAA
1 CAACCCTCAATCCGGTCTGATCTTAGACT-GGAATGAACTCTGTATGCATAAGCCAACCCACGAA
* * * * *
12004127 ACGAGTGTGTAGGCGCTGAGCCGGCCGAAGAGGCATAATGCACAAGTCGAGGATCGGCCCGGTCC
65 ACGAGCGTGCAGGCGCTCAGCCGGCCGAAGAGGCAAAATGCACAAGCCGAGGATCGGCCCGGTCC
*
12004192 CCTCTACGTGCTACCGATCCTGCTGCCGGTCCTGCTACCA
130 CCTCTACGTGCTACCGATACTGCTGCCGGTCCTGCTACCA
* ** * * * *
12004232 TAACCCTCAATCCGG-CTGGGGCATAGACATGGTATGAACTCTGTATGCCTAAGCCAACCCATGA
1 CAACCCTCAATCCGGTCT-GATCTTAGAC-TGGAATGAACTCTGTATGCATAAGCCAACCCACGA
* * * * * ** *
12004296 AATGAGCGTGCGGGCGTTCAGCCGGTCGGAGAGGCAAAATGTGCAAGCC-AGGGATCGGGCCGGT
64 AACGAGCGTGCAGGCGCTCAGCCGGCCGAAGAGGCAAAATGCACAAGCCGA-GGATCGGCCCGGT
* ** * * *
12004360 GCCCC-CTGCGTGCTGTCGATACTGTTGCTGGTCCTGCTACCG
128 -CCCCTCTACGTGCTACCGATACTGCTGCCGGTCCTGCTACCA
*
12004402 CAACCCTCAATTCGGTCTGATCTTAGACTGGGAATGAACTC
1 CAACCCTCAATCCGGTCTGATCTTAGACT-GGAATGAACTC
12004443 ATATGCTTAG
Statistics
Matches: 168, Mismatches: 37, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
169 4 0.02
170 157 0.93
171 7 0.04
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (169 bp):
CAACCCTCAATCCGGTCTGATCTTAGACTGGAATGAACTCTGTATGCATAAGCCAACCCACGAAA
CGAGCGTGCAGGCGCTCAGCCGGCCGAAGAGGCAAAATGCACAAGCCGAGGATCGGCCCGGTCCC
CTCTACGTGCTACCGATACTGCTGCCGGTCCTGCTACCA
Found at i:12004742 original size:159 final size:155
Alignment explanation
Indices: 12004458--12004949 Score: 524
Period size: 159 Copynumber: 3.1 Consensus size: 155
12004448 CTTAGACATT
** * *
12004458 GAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGACGCTCAGTCGGCCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACAAAAGGAGCGTGCGGGCGCTCAG-CCGCCGGAGA
* * *
12004523 GGCAGAATGCGCAAGCCAGGGATCGGCCTAGT-CCCACCCTGCGTGCTGTCAATCCTGCTGCCGC
65 GGCAGAATGCGCAAGCCAGGGATCGCCCGA-TCCCCA-CCTGCGTGCTGTCGATCC-GCTGCCGC
*
12004587 AACCCTCGGTCCGATTCGATCTTAGACTGG
127 AACCCTCGGTCC-ACTCGATCTTAGACTGG
* * * * * *
12004617 GAATGAACTCTGTATGCCTAAGTCAACCCATAAAAGGAGCGTGCGGGCGTTGAGCCGACTGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACAAAAGGAGCGTGCGGGCGCTCAGCCG-CCGGAGA
* * * * ** *
12004682 GGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCATCTGCATGCTACCGATCGCGCTGCCACA
65 GGCAGAATGCGCAAGCCAGGGATCG-CCCGATCCCCACCTGCGTGCTGTCGATC-CGCTGCCGCA
* * **
12004747 ACCCTCAGTCCAGCTGGGGCTTAGACAT-G
128 ACCCTCGGTCCA-CTCGATCTTAGAC-TGG
* *
12004776 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG-GCGTGCGGGCGCTCAGCCTGCCGGAG
1 GAATGAACTCCGTATGCCTAAGCCAACCCAC-AAAAGGAGCGTGCGGGCGCTCAGCC-GCCGGAG
* * ** *
12004840 AGGTAGAATGCGCAAGCCAGGGATCGGTCCGATCCCC-CCTGCGTGCTGTCGATTCTACTGTCGC
64 AGGCAGAATGCGCAAGCCAGGGATC-GCCCGATCCCCACCTGCGTGCTGTCGA-TCCGCTGCCGC
*
12004904 AACCCTCGGTCCAGTCTGATCTTAGACTGG
127 AACCCTCGGTCCACTC-GATCTTAGACTGG
12004934 GAATGAACTCCGTATG
1 GAATGAACTCCGTATG
12004950 TGTAGATTGG
Statistics
Matches: 270, Mismatches: 51, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
157 2 0.01
158 55 0.20
159 197 0.73
160 16 0.06
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (155 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACAAAAGGAGCGTGCGGGCGCTCAGCCGCCGGAGAG
GCAGAATGCGCAAGCCAGGGATCGCCCGATCCCCACCTGCGTGCTGTCGATCCGCTGCCGCAACC
CTCGGTCCACTCGATCTTAGACTGG
Found at i:12004887 original size:513 final size:519
Alignment explanation
Indices: 12003897--12004892 Score: 1263
Period size: 524 Copynumber: 1.9 Consensus size: 519
12003887 GTGGCTCAAA
* * * *
12003897 ATCTTAGACTGGGAATTAACTCCGTATGCTTAGCCATGGATTGAACTCCGTATGCCTAAGCCAAA
1 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAA
* ** ** * * * * * *
12003962 CCACGAAATGAGCGTGCGGGTGTTCAGTCGATCGGAGAGGTAGAATGTGTAAGCCGGGGATCGGC
66 CCACAAAACAAGCGTGCGGACGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGC
* * * *
12004027 CCGGTCACCCCTACGTGCTGTCAATCGTACTGTCGCAACCCTCAGTCTAGTCTGATCTTAGACTA
131 CCAGTCACCCCTACGTGCTGTCAATCCTACTGCCGCAACCCTCAGTCGAGTCTGATCTTAGACTA
* * * *
12004092 GGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGTGTGTAGGCGCTGAGCCGGCCGAAG
196 GGAATGAACTCTGTATGCATAAGTCAACCCACAAAACGAGCGTGCAGGCGCTGAGCCGACCGAAG
* * * *
12004157 AGGCATAATGCACAAGTCGAGGATCGGCCCGGTCCCCTCTACGTGCTACCGATCCTGCTGCCGGT
261 AGGCATAATGCACAAGCCGAGGATCGACCCGATCCCCTCTACATGCTACCGA--CTGCTGCCGG-
* * * **
12004222 CCTGCTACCATAACCCTCAATCCGGCTGGGGCATAGACATGGTATGAACTCTGTATGCCTAAGCC
323 CCTG--ACCACAACCCTCAATCCAGCTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * *
12004287 AACCCATGAAATGAGCGTGCGGGCGTTCAGCCGGTCGGAGAGGCAAAATGTGCAAGCCAGGGATC
386 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGATC
* *
12004352 GGGCCGGTGCCCCCTGCGTGCTGTCGATACTGTTGCTGGTCCTGCTACCGCAACCCTCAATTCGG
451 GGGCCGATCCCCCCTGCGTGCTGTCGATACTGTTGCTGGTCCTGCTACCGCAACCCTCAATTCGG
12004417 TCTG
516 TCTG
* *
12004421 ATCTTAGACTGGGAATGAACT-CATATGCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAA
*
12004485 CCACAAAACAAGCGTGCGGACGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGC
66 CCACAAAACAAGCGTGCGGACGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGC
* * * * * *
12004550 CTAGTCCCACCCTGCGTGCTGTCAATCCTGCTGCCGCAACCCTCGGTCCGATTC-GATCTTAGAC
131 CCAGTCAC-CCCTACGTGCTGTCAATCCTACTGCCGCAACCCTCAGT-CGAGTCTGATCTTAGAC
* * * * * * * *
12004614 TGGGAATGAACTCTGTATGCCTAAGTCAACCCATAAAAGGAGCGTGCGGGCGTTGAGCCGACTGG
194 TAGGAATGAACTCTGTATGCATAAGTCAACCCACAAAACGAGCGTGCAGGCGCTGAGCCGACCGA
* * *
12004679 AGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCATCTGCATGCTACCGA-T-C-G-C-G
259 AGAGGCATAATGCACAAGCCGAGGATCGACCCGATCCCC-TCTACATGCTACCGACTGCTGCCGG
* *
12004739 -CTG-CCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
323 CCTGACCACAACCCTCAATCCAGCTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * *
12004802 CCCACGAAACGGGCGTGCGGGCGCTCAGCCTGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGG
388 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGG
*
12004867 TCCGATCCCCCCTGCGTGCTGTCGAT
453 GCCGATCCCCCCTGCGTGCTGTCGAT
12004893 TCTACTGTCG
Statistics
Matches: 403, Mismatches: 66, Indels: 17
0.83 0.14 0.03
Matches are distributed among these distances:
513 132 0.33
516 3 0.01
518 1 0.00
519 1 0.00
520 1 0.00
521 1 0.00
522 1 0.00
523 96 0.24
524 150 0.37
525 17 0.04
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (519 bp):
ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAA
CCACAAAACAAGCGTGCGGACGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGC
CCAGTCACCCCTACGTGCTGTCAATCCTACTGCCGCAACCCTCAGTCGAGTCTGATCTTAGACTA
GGAATGAACTCTGTATGCATAAGTCAACCCACAAAACGAGCGTGCAGGCGCTGAGCCGACCGAAG
AGGCATAATGCACAAGCCGAGGATCGACCCGATCCCCTCTACATGCTACCGACTGCTGCCGGCCT
GACCACAACCCTCAATCCAGCTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGGCC
GATCCCCCCTGCGTGCTGTCGATACTGTTGCTGGTCCTGCTACCGCAACCCTCAATTCGGTCTG
Found at i:12004965 original size:26 final size:26
Alignment explanation
Indices: 12004926--12004975 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
12004916 AGTCTGATCT
12004926 TAGACTGGGAATGAACTCCGTATGTG
1 TAGACTGGGAATGAACTCCGTATGTG
* *
12004952 TAGATTGGGGATGAACTCCGTATG
1 TAGACTGGGAATGAACTCCGTATG
12004976 CCTAAATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGTG
Found at i:12005666 original size:26 final size:26
Alignment explanation
Indices: 12005630--12005682 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12005620 CCGGTCTGAT
*
12005630 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
12005656 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12005682 C
1 C
12005683 CTCAGTCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12005876 original size:26 final size:26
Alignment explanation
Indices: 12005838--12005890 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12005828 TCGGTCTGAT
12005838 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
12005864 CTTAGACTTGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12005890 C
1 C
12005891 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12006278 original size:159 final size:157
Alignment explanation
Indices: 12005866--12006324 Score: 458
Period size: 159 Copynumber: 2.9 Consensus size: 157
12005856 TCCGTATGCT
* * *
12005866 TAGACTTGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
1 TAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCG
* * * * ** * * * *
12005931 GTCGGAGAGGTAGAATACGTAAGTCGGGTA-CCGACTAGATCCCACCTACGTGCTGTCGATCCTG
65 GCCGGAGAGGCAGAATACGTAAGTCGGGGATCAG-CCCGGTCCCCCCTACATGCTATCGATCCTG
* *
12005995 CTGCCGCAACCCTCAGTCCGCTTCGATCT
129 CTGCCGCAACCCTCAGTCCGCTTCGAGCG
* * * * *
12006024 TAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAACGAGCGTTC-AGGCGTTGAGCC
1 TAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGA-GCGCTCAGCC
* * ** * *
12006088 GGCCGGAGAGGCATAATTCGTAAGTTAGGGATCAGCCCGGTCCCCCTCTACATACTATCGATCCC
64 GGCCGGAGAGGCAGAATACGTAAGTCGGGGATCAGCCCGGTCCCCC-CTACATGCTATCGATCCT
* * *
12006153 GCTGCCACAACCCTCAGTCCGGC-TGGGGCG
128 GCTGCCGCAACCCTCAGTCC-GCTTCGAGCG
* * * * *
12006183 TAGACATGGAATGAACTCCCTATGGCTAAGCCAACCCACGAAATGGGCATGCGAGCGCTCAGCCG
1 TAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCG
* * * ** *
12006248 ACCGGAGAGGCAGAATACGCAAGCCGGGGATTGGCCCGGT-CCCCCTGCATGCTATCGATCCTGC
65 GCCGGAGAGGCAGAATACGTAAGTCGGGGATCAGCCCGGTCCCCCCTACATGCTATCGATCCTGC
*
12006312 TGCCGTAACCCTC
130 TGCCGCAACCCTC
12006325 GATCTGATCT
Statistics
Matches: 241, Mismatches: 53, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
157 29 0.12
158 88 0.37
159 120 0.50
160 4 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
TAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGG
CCGGAGAGGCAGAATACGTAAGTCGGGGATCAGCCCGGTCCCCCCTACATGCTATCGATCCTGCT
GCCGCAACCCTCAGTCCGCTTCGAGCG
Found at i:12007092 original size:159 final size:158
Alignment explanation
Indices: 12006743--12007105 Score: 398
Period size: 158 Copynumber: 2.3 Consensus size: 158
12006733 AACTCTATAT
* * *
12006743 GCTTCGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
* * * * **
12006808 CCGATCGAAGAGGCAGAATGCGTAAGCCGGGGACTGGCGCAGTCCCCCCTGCATGCTGTCGATCC
66 CCGATCGAAGAGGAAGAATGCGCAAGCCGGGGACAGCCGCAGTCCCCCCTGCATGCTACCGATCC
* *
12006873 TGCTACCTCAACCCTCGGTCTGGTCTGA
131 CGCTACCACAACCCTCGGTCTGGTCTGA
* * * * * *
12006901 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCC-CTAGAACGAGCATGCGGGCGTTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGA-AACGAGCATGCGGGCGCTC
* *
12006964 AACCGGTC-AGAGAGGAATAATGCGCAAGCCGGGGATCAGCC-C-GATCCCCCTCTGCGA-GCTA
64 AACCGATCGA-AGAGGAAGAATGCGCAAGCCGGGGA-CAGCCGCAG-TCCCCC-CTGC-ATGCTA
* * *
12007025 CCGATCCCGCTGCCACAACCCTTGGTCTGG-CTGGG
124 CCGATCCCGCTACCACAACCCTCGGTCTGGTCT-GA
*
12007060 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
12007106 TGGACGTACG
Statistics
Matches: 168, Mismatches: 27, Indels: 19
0.79 0.13 0.09
Matches are distributed among these distances:
157 5 0.03
158 87 0.52
159 72 0.43
160 4 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
CCGATCGAAGAGGAAGAATGCGCAAGCCGGGGACAGCCGCAGTCCCCCCTGCATGCTACCGATCC
CGCTACCACAACCCTCGGTCTGGTCTGA
Found at i:12007255 original size:26 final size:26
Alignment explanation
Indices: 12007219--12007271 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12007209 CCTATCTGAT
12007219 CTTAGACTGGGAATGAACAC-CGTATG
1 CTTAGACTGGGAATGAAC-CTCGTATG
*
12007245 CTTAGACTGGGGATGAACCTCGTATG
1 CTTAGACTGGGAATGAACCTCGTATG
12007271 C
1 C
12007272 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCTCGTATG
Found at i:12008094 original size:25 final size:26
Alignment explanation
Indices: 12008045--12008094 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12008035 CTGGTCTGAT
12008045 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACTGGGAATGAATTCTGTATG
12008071 CTTAGACTGGG-ATGAAGTTC-GTAT
1 CTTAGACTGGGAATGAA-TTCTGTAT
12008095 CCCTAAGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAATTCTGTATG
Found at i:12008815 original size:26 final size:26
Alignment explanation
Indices: 12008777--12008829 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12008767 GGCTCAAACT
12008777 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12008803 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12008829 C
1 C
12008830 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12009149 original size:26 final size:26
Alignment explanation
Indices: 12009120--12009172 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12009110 CCAGTCCGAT
*
12009120 CTTAGACTG-GGAATGACCTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
*
12009146 CTTAGATTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
12009172 C
1 C
12009173 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:12009368 original size:26 final size:26
Alignment explanation
Indices: 12009330--12009382 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12009320 CCGATTCGAT
12009330 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12009356 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
12009382 C
1 C
12009383 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12016879 original size:26 final size:26
Alignment explanation
Indices: 12016841--12016893 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12016831 GGCTCAAAAT
12016841 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12016867 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12016893 C
1 C
12016894 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12017279 original size:159 final size:156
Alignment explanation
Indices: 12016866--12017311 Score: 400
Period size: 159 Copynumber: 2.8 Consensus size: 156
12016856 AACTCCGTAT
* * * * *
12016866 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAGCGAGCGTGGGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGAGGGCGCTCAG
* * * * * *
12016931 CCGGTCGGAG-GGTAGAATGCGCAAGCCGAGGATCAGCCTGGTCCCCCCTGCATACTATTGATCC
66 CC-GTCGGAGAGGAAGAATGCGCAAGCCG-GGATCAGACTGGTCCCCCCTGCGTGCTGTCGATCC
* * **
12016995 TACTGCCCCAACCATCGATCCGGTCTGA
129 TACTACCACAACCATCGATCCGAACTGA
* * * * ** *
12017023 TCTTAGAC-TGGGAATGAACT-CCTATGCATAAGTCAACCCATGAAACGAGCATGAGGTTGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGAGGGCGCTCA
* * * * * *
12017086 GCCGATCGAAGAGGAATAATGCGTAAGCTGGGGATCAGTCTGGTCCCCCTCTGCGTGCTGTCGGT
65 GCCG-TCGGAGAGGAAGAATGCGCAAGC-CGGGATCAGACTGGTCCCCC-CTGCGTGCTGTCGAT
* * *
12017151 -CTCACTACCACAACCTTCGGTCC-AACTGGG
127 CCT-ACTACCACAACCATCGATCCGAACT-GA
* * * *
12017181 GCTTAGACATGGAATGAACTCCCTATGCCTAGGCCAACCCACGAAATGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGAGGGCGCTCAG
* * * *
12017246 CCAGTCGGAGAGGCAGAATTCGCAAGCCAGGGATC-GACTTGGTCCCCCCTACGTGCTGTTGATC
66 CC-GTCGGAGAGGAAGAATGCGCAAGCC-GGGATCAGAC-TGGTCCCCCCTGCGTGCTGTCGATC
12017310 CT
128 CT
12017312 GCTGTCGCAA
Statistics
Matches: 225, Mismatches: 51, Indels: 24
0.75 0.17 0.08
Matches are distributed among these distances:
155 1 0.00
156 41 0.18
157 51 0.23
158 59 0.26
159 72 0.32
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGAGGGCGCTCAG
CCGTCGGAGAGGAAGAATGCGCAAGCCGGGATCAGACTGGTCCCCCCTGCGTGCTGTCGATCCTA
CTACCACAACCATCGATCCGAACTGA
Found at i:12017344 original size:158 final size:155
Alignment explanation
Indices: 12016867--12017359 Score: 404
Period size: 158 Copynumber: 3.1 Consensus size: 155
12016857 ACTCCGTATG
* * * * *
12016867 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAGCGAGCGTGGGGGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGAGGGCGCTCAG
* * * * *
12016931 CCGGTCGGAG-GGTAGAATGCGCAAGCCGAGGATCAGCCTGGTCCCCCCTGCATACTATTGATCC
65 CC-GTCGGAGAGGAAGAATGCGCAAGCCG-GGATCA-CTTGGTCCCCCCTGCGTGCTGTTGATCC
* * * * *
12016995 TACTGCCCCAACCATCGATCCGGTCTGAT
127 TACTGCCACAACCATCGGTTCGATCCGAT
* * * ** *
12017024 CTTAGACTGGGAATGAACT-CCTATGCATAAGTCAACCCATGAAACGAGCATGAGGTTGCTGAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGAGGGCGCTCAGC
* * * * * * *
12017088 CGATCGAAGAGGAATAATGCGTAAGCTGGGGATCAGTCTGGTCCCCCTCTGCGTGCTGTCGGT-C
66 CG-TCGGAGAGGAAGAATGCGCAAGC-CGGGATCACT-TGGTCCCCC-CTGCGTGCTGTTGATCC
* * * * * **
12017152 TCACTACCACAACCTTCGG-TCCAACTGGGG
127 T-ACTGCCACAACCATCGGTTCGATC-CGAT
* * * *
12017182 CTTAGACAT-GGAATGAACTCCCTATGCCTAGGCCAACCCACGAAATGGGCATGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGAGGGCGCTCAG
* * *
12017246 CCAGTCGGAGAGGCAGAATTCGCAAGCCAGGGATCGACTTGGTCCCCCCTACGTGCTGTTGATCC
65 CC-GTCGGAGAGGAAGAATGCGCAAGCC-GGGATC-ACTTGGTCCCCCCTGCGTGCTGTTGATCC
* * * *
12017311 TGCTGTCGCAACCCTCGGTTCGATCCGAT
127 TACTGCCACAACCATCGGTTCGATCCGAT
12017340 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
12017360 TGTATGCTTA
Statistics
Matches: 256, Mismatches: 64, Indels: 31
0.73 0.18 0.09
Matches are distributed among these distances:
155 1 0.00
156 41 0.16
157 50 0.20
158 85 0.33
159 76 0.30
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (155 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGAGGGCGCTCAGC
CGTCGGAGAGGAAGAATGCGCAAGCCGGGATCACTTGGTCCCCCCTGCGTGCTGTTGATCCTACT
GCCACAACCATCGGTTCGATCCGAT
Found at i:12017392 original size:26 final size:26
Alignment explanation
Indices: 12017340--12017392 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12017330 TCGATCCGAT
* *
12017340 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
12017366 CTTAGACTGGGGATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
12017392 C
1 C
12017393 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:12017736 original size:26 final size:26
Alignment explanation
Indices: 12017707--12017759 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12017697 CTGGTCTGAT
12017707 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
*
12017733 CTTAGACATGGATTGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
12017759 C
1 C
12017760 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:12018230 original size:26 final size:26
Alignment explanation
Indices: 12018201--12018250 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
12018191 CGGTTCGATC
* *
12018201 TTAGACTATGAATGAACTCCGTATTT
1 TTAGACTACGAACGAACTCCGTATTT
*
12018227 TTAGACTACGGACGAACTCCGTAT
1 TTAGACTACGAACGAACTCCGTAT
12018251 GCCTAAGTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (26 bp):
TTAGACTACGAACGAACTCCGTATTT
Found at i:12018972 original size:26 final size:26
Alignment explanation
Indices: 12018934--12018986 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12018924 GGCTCAAAAT
12018934 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
12018960 CTTAGACAT-GGAATGGACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12018986 C
1 C
12018987 CTAGGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12019312 original size:25 final size:26
Alignment explanation
Indices: 12019278--12019329 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
12019268 CCGATCCGAT
12019278 CTTAGACTGGGAATGAACT-CGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12019303 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12019329 C
1 C
12019330 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12019660 original size:171 final size:171
Alignment explanation
Indices: 12019302--12019665 Score: 378
Period size: 171 Copynumber: 2.1 Consensus size: 171
12019292 GAACTCGTAT
* * * * **
12019302 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCAGGCGCTCTG
1 GCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCATGCAGACGCTCAA
* * *
12019367 CCAGCCAGAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGATCCCCTTCTGCGTGCAGCCGATC
66 CCAGCCAGAGAGGCAGAATGCGAAAGCCGAGGATCAGCCCGATCCCCTCCTGCGTGCAGCCGATC
* * * * *
12019432 CCGCTGTCAGTCCTGCTGCCACAACCCTCGATCCGGCTGGG
131 CCACTGTCAGTCATGCTGCAACAACCCTCGATCCGGCTCGA
* * ** *
12019473 GCTTAAACAT-GGAATGAACTCTATATGCCTAAGCCAACCCATGAAACGAGCGTGC-GAACGCTC
1 GCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCATGCAG-ACGCTC
* * * * * * * *
12019536 AACCGGCCGGAGAGGCAGAATGCGAAAGTCGCGGAT-TGACCCGGTCCCCTCCTGCGTGCTGTCG
64 AACCAGCCAGAGAGGCAGAATGCGAAAGCCGAGGATCAG-CCCGATCCCCTCCTGCGTGCAGCCG
* *
12019600 ATCCTACTG-CTGGTCATGCTGCAACAACCCTCGATCCGG-TCCGA
128 ATCCCACTGTC-AGTCATGCTGCAACAACCCTCGATCCGGCT-CGA
*
12019644 TCTTAGACTGGGAATGAACTCC
1 GCTTAGACTGGGAATGAACTCC
12019666 GTACGCTTAG
Statistics
Matches: 155, Mismatches: 32, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
170 5 0.03
171 149 0.96
172 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.19
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCATGCAGACGCTCAA
CCAGCCAGAGAGGCAGAATGCGAAAGCCGAGGATCAGCCCGATCCCCTCCTGCGTGCAGCCGATC
CCACTGTCAGTCATGCTGCAACAACCCTCGATCCGGCTCGA
Found at i:12019817 original size:355 final size:361
Alignment explanation
Indices: 12019258--12019938 Score: 821
Period size: 355 Copynumber: 1.9 Consensus size: 361
12019248 CTGCTACCGT
*
12019258 AACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGGGATGAACTC
1 AACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCGTACGCTTAGACTGGGGATGAACTC
* * * *
12019323 CGTATGCCTAAGTCAACCCACAAAACGAGCATGCAGGCGCTCTGCCAGCCAGAGAGGCATAATGC
66 CCTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCGCTCAGCCAGCCAGAGAGGCAGAATGC
* *
12019388 GTAAGCCGAGGATCAGCCCGATCCCCTTCTGCGTGCAGCCGATCCCGCTGTCAGTCCTGCTGCCA
131 GTAAGCCGAGGACCAGCCCGATCCCC-TC-GCGT--AGCCGAT--CGCTGTCAGTCCTGCTACCA
* *
12019453 CAACCCTCGATCCGG-CTGGGGCTTAAACAT-GGAATGAACTCTATATGCCTAAGCCAACCCATG
190 CAACCCTCGATCCGGTC-CGAGCTTAAAC-TGGGAATGAACTCTATATGCCTAAGCCAACCCATG
* * *
12019516 AAACGAGCGTGCGAACGCTCAACCGGCCGGAGAGGCAGAATGCGAAAGTCGCGGATTGACCCGGT
253 AAACGAGCGTGCGAACGCTCAACCGGCCGGAGAGGCAGAATGCGAAAGTCGAGGATCGACCCGAT
12019581 CCCCTCCTGCGTGCTGTCGATCCTACTGCTGGTCATGCTGCAAC
318 CCCCTCCTGCGTGCTGTCGATCCTACTGCTGGTCATGCTGCAAC
*
12019625 AACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACAT-GGGATGAAC
1 AACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACT-CGTACGCTTAGAC-TGGGGATGAAC
** * * * * * *
12019689 TCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAAT
64 TCCCTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCGCTCAGCCAGCCAGAGAGGCAGAAT
* * *
12019754 GCGTAAGCCGGGGACC-GACCC-AGTCCCC-C-C-T-G-TG-T-GCTGTC-GATCCTGCTACTAC
129 GCGTAAGCCGAGGACCAG-CCCGA-TCCCCTCGCGTAGCCGATCGCTGTCAG-TCCTGCTACCAC
* * * *
12019809 AACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAA
191 AACCCTCGATCCGGTCCGAGCTTAAACTGGGAATGAACTCTATATGCCTAAGCCAACCCATGAAA
* ** * * * * * *
12019874 TGAGCGTGCGGGCGCTGAGCCGGTCGGAGAGGCATAATGTGCAAGTCGAGGATCGACCCGATCCC
256 CGAGCGTGCGAACGCTCAACCGGCCGGAGAGGCAGAATGCGAAAGTCGAGGATCGACCCGATCCC
12019939 TCTCTGCAAG
Statistics
Matches: 270, Mismatches: 37, Indels: 26
0.81 0.11 0.08
Matches are distributed among these distances:
354 2 0.01
355 124 0.46
356 1 0.00
358 1 0.00
359 1 0.00
360 1 0.00
363 1 0.00
364 1 0.00
366 1 0.00
367 40 0.15
368 96 0.36
369 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (361 bp):
AACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCGTACGCTTAGACTGGGGATGAACTC
CCTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGCGCTCAGCCAGCCAGAGAGGCAGAATGC
GTAAGCCGAGGACCAGCCCGATCCCCTCGCGTAGCCGATCGCTGTCAGTCCTGCTACCACAACCC
TCGATCCGGTCCGAGCTTAAACTGGGAATGAACTCTATATGCCTAAGCCAACCCATGAAACGAGC
GTGCGAACGCTCAACCGGCCGGAGAGGCAGAATGCGAAAGTCGAGGATCGACCCGATCCCCTCCT
GCGTGCTGTCGATCCTACTGCTGGTCATGCTGCAAC
Found at i:12020040 original size:159 final size:157
Alignment explanation
Indices: 12019670--12020088 Score: 477
Period size: 158 Copynumber: 2.6 Consensus size: 157
12019660 AACTCCGTAC
*
12019670 GCTTAGACATGGGATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * *** *
12019735 CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGACCGACCCAGTCCCCCCTGTGTGCTGTCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAG-CGAGGATCGACCCAGTCCCCCCTGCAAGCTGCCGATCC
* * *
12019800 TGCTACTACAACCCTCGATCCGGTCCGA
130 CGCTACCACAACCCTCGATCCGCTCCGA
* ** * *
12019828 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * * *
12019892 GCCGGTCGGAGAGGCATAATGTGCAAGTCGAGGATCGACCC-GATCCCTCTCTGCAAGCTGCCGG
65 GCCGGTCGGAGAGGCAGAATGCGCAAG-CGAGGATCGACCCAG-TCCC-CCCTGCAAGCTGCCGA
* * * *
12019956 TCCCGCTGCCACAACCCTCGGTCCAGCT-GGG
127 TCCCGCTACCACAACCCTCGATCC-GCTCCGA
* * *
12019987 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * *
12020052 CC-GACTGGAGAAGCAGAATGCGCAAGCCAGGATCGAC
66 CCGGTC-GGAGAGGCAGAATGCGCAAGCGAGGATCGAC
12020089 TTGATCCCCC
Statistics
Matches: 217, Mismatches: 38, Indels: 12
0.81 0.14 0.04
Matches are distributed among these distances:
157 2 0.01
158 107 0.49
159 105 0.48
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCGAGGATCGACCCAGTCCCCCCTGCAAGCTGCCGATCCC
GCTACCACAACCCTCGATCCGCTCCGA
Found at i:12020906 original size:26 final size:26
Alignment explanation
Indices: 12020869--12020919 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12020859 GCTCAAAATC
12020869 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
12020895 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
12020920 CCTAATCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:12021255 original size:159 final size:159
Alignment explanation
Indices: 12020895--12021332 Score: 456
Period size: 159 Copynumber: 2.8 Consensus size: 159
12020885 CTCCGTATGG
* * * *
12020895 TTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCACAAAATGAGCGTGCGGGCGCTCAACC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * *
12020960 GGTCGAAGAGGCAGAATGCGCAAGTC-GAGGATCGACCCGATCCCCCCTGCGTGCTGTCAATCCT
66 GGCCGAAGAGGCAGAATGCGCAAGCCAGGGGATCGACCCGACCCCCCCTACGTGCTGCCAATCCC
* ** * *
12021024 ACTACCGCAACCCTCAGTTCGGTTTGATC
131 ACTACCACAACCCTCAGTTCGACTGGAGC
* * * * *
12021053 TTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCGCTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * **
12021117 CGACCGAAGAGGCATAATGCGCAAG-CAGGGGATCGGCCC-AGCCCCCCTCTACGTGTTGCCGGT
65 CGGCCGAAGAGGCAGAATGCGCAAGCCAGGGGATCGACCCGA-CCCCCC-CTACGTGCTGCCAAT
* * * *
12021180 CCCGCTGCCACAACCCTCGGTTCGACTGGGGC
128 CCCACTACCACAACCCTCAGTTCGACTGGAGC
* *
12021212 TTAGACATGGAATGAACTCCTTATGCCTAAGCCAACTCACGAAAC-AGGCGTGCGGGCGCTCAGC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCAGC
* * * * *
12021276 CGGCCGGAGAGGCAGAATGCACAAGCCA-GGGACCGACCCGATCCCCCCTGCGTGCTG
65 CGGCCGAAGAGGCAGAATGCGCAAGCCAGGGGATCGACCCGACCCCCCCTACGTGCTG
12021333 TCGATCTTGC
Statistics
Matches: 226, Mismatches: 46, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.01
158 99 0.44
159 120 0.53
160 4 0.02
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (159 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GGCCGAAGAGGCAGAATGCGCAAGCCAGGGGATCGACCCGACCCCCCCTACGTGCTGCCAATCCC
ACTACCACAACCCTCAGTTCGACTGGAGC
Found at i:12021413 original size:26 final size:26
Alignment explanation
Indices: 12021369--12021473 Score: 113
Period size: 26 Copynumber: 4.0 Consensus size: 26
12021359 CTGATCCAAT
*
12021369 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
12021395 CTTAGACTGGGGATCAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*** * *
12021421 CCCCGACTGGGTATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12021447 CTTAGCCAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12021473 C
1 C
12021474 CTAAGCCAAC
Statistics
Matches: 63, Mismatches: 15, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
26 62 0.98
27 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12021437 original size:52 final size:52
Alignment explanation
Indices: 12021373--12021474 Score: 136
Period size: 52 Copynumber: 2.0 Consensus size: 52
12021363 TCCAATCTTA
*
12021373 GACTGGTAATGAACTCCGTATGCTTAGAC-TGGGGATCAACTCCGTATGCCCC
1 GACTGGTAATGAACTCCGTATGCTTAGACAT-GGAATCAACTCCGTATGCCCC
* * *
12021425 GACTGGGT-ATGAACTCTGTATGCTTAGCCATGGAATGAACTCCGTATGCC
1 GACT-GGTAATGAACTCCGTATGCTTAGACATGGAATCAACTCCGTATGCC
12021475 TAAGCCAACC
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
52 40 0.91
53 4 0.09
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.26
Consensus pattern (52 bp):
GACTGGTAATGAACTCCGTATGCTTAGACATGGAATCAACTCCGTATGCCCC
Found at i:12021802 original size:159 final size:157
Alignment explanation
Indices: 12021453--12021948 Score: 484
Period size: 158 Copynumber: 3.1 Consensus size: 157
12021443 TATGCTTAGC
*
12021453 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAGTCGATCG
1 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGATCG
* * ** **
12021518 AAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCGCCCT-TGCGTGCTGTCAATCTTGCTGC
66 AAGAGGCAGAATGCGCAAG-CGGGGAT-GGCCCGGTCCCCCTCTGCGTGCTACCAATCCCGCTGC
* * * *
12021582 CACAACCCTCGGTCTGCTCTGATCTTAGA
129 CACAACCCTCGATCCGCTCTGAGCTTACA
* * * * * * * *
12021611 C-TAGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGTGGGTGTTGAGCCGA-C
1 CAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGATC
*
12021674 TGAAGAGGCATAATGCGCAAGTCGGGGACTGGCCCGGTCCCCCTCTGCGTGCTACCAATCCCGCT
65 -GAAGAGGCAGAATGCGCAAG-CGGGGA-TGGCCCGGTCCCCCTCTGCGTGCTACCAATCCCGCT
* * *
12021739 GCCACAACTCTCGATCCGGT-TGGGGCTTACA
127 GCCACAACCCTCGATCCGCTCT-GAGCTTACA
* * * * *
12021770 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCCGTCGGTCG
1 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGATCG
* * ** * * *
12021835 GAGAGGCAGAATGCGCAAGCTGGGGATTGGCCCGGTCCCCC-CTGCGTACTGTCGATCCTGCAGC
66 AAGAGGCAGAATGCGCAAGC-GGGGA-TGGCCCGGTCCCCCTCTGCGTGCTACCAATCCCGCTGC
* * * *
12021899 CACAACCCTCGGTCCAG-TCCGATCTTAGA
129 CACAACCCTCGATCC-GCTCTGAGCTTACA
*
12021928 C-TAGGAATGAACTTCGTATGC
1 CAT-GGAATGAACTCCGTATGC
12021949 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 54, Indels: 22
0.78 0.15 0.06
Matches are distributed among these distances:
157 3 0.01
158 144 0.53
159 124 0.45
160 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGATCG
AAGAGGCAGAATGCGCAAGCGGGGATGGCCCGGTCCCCCTCTGCGTGCTACCAATCCCGCTGCCA
CAACCCTCGATCCGCTCTGAGCTTACA
Found at i:12021926 original size:553 final size:553
Alignment explanation
Indices: 12020872--12021975 Score: 1493
Period size: 553 Copynumber: 2.0 Consensus size: 553
12020862 CAAAATCTTA
* *
12020872 GACTGGGAATGAACTCCGTATGGTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCACAA
1 GACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAA
* * * *
12020937 AATGAGCGTGCGGGCGCTCAACCGGTCGAAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATC
66 AACGAGCATGCGGGCGCTCAACCGATCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATC
* * * *
12021002 CCCCCTGCGTGCTGTCAATCCTACTACCGCAACCCTCAGTTCGGTTTGATCTTAGACTGGGAATG
131 CCCCCTGCGTGCTGTCAATCCTACTACCACAACCCTCAGTTCGCTCTGATCTTAGACTAGGAATG
*
12021067 AACTTCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCGCTGAGCCGACCGAAGAGGCAT
196 AACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCAT
* * **
12021132 AATGCGCAAGCAGGGGATCGGCCCAGCCCCCCTCTACGTGTTGCCGGTCCCGCTGCCACAACCCT
261 AATGCGCAAGCAGGGGATCGGCCCAGCCCCCCTCTACGTGCTACCAATCCCGCTGCCACAACCCT
* * * * *
12021197 CGGTTCGACTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACTCACGAAACAGGCG
326 CGATCCGACTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCG
12021262 TGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCAGGGACCGACCCGATCCCCCCTGC
391 TGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCAGGGACCGACCCGATCCCCCCTGC
* * *** * *
12021327 GTGCTGTCGATCTTGCTACTGGAAGCCTCGGTCTGATCCAATCTTAGACT-GGTAATGAACTCCG
456 GTACTGTCGATCCTGCTACCACAACCCTCGGTCAGATCCAATCTTAGACTAGG-AATGAACTCCG
12021391 TATGCTTAGACTGGGGATCAACTCCGTATGCCCC
520 TATGCTTAGACTGGGGATCAACTCCGTATGCCCC
* * * *
12021425 GACTGGGTATGAACTCTGTATGCTTAGCCATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
1 GACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAA
* ** * *
12021490 AACGAGCATGCGGGTGCTCAGTCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTC
66 AACGAGCATGCGGGCGCTCAACCGATCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATC
* * * * * *
12021555 GCCCTTGCGTGCTGTCAATCTTGCTGCCACAACCCTC-GGTCTGCTCTGATCTTAGACTAGGAAT
131 CCCCCTGCGTGCTGTCAATCCTACTACCACAACCCTCAGTTC-GCTCTGATCTTAGACTAGGAAT
* * * * *
12021619 GAAC-TCTGTATGCATAAGTCAACCCATGAAACGAGCGTGTGGGTGTTGAGCCGACTGAAGAGGC
195 GAACTTC-GTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGC
* * *
12021683 ATAATGCGCAAGTC-GGGGA-CTGGCCCGGTCCCCCTCTGCGTGCTACCAATCCCGCTGCCACAA
259 ATAATGCGCAAG-CAGGGGATC-GGCCCAGCCCCCCTCTACGTGCTACCAATCCCGCTGCCACAA
* ** *
12021746 CTCTCGATCCGGTTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
322 CCCTCGATCCGACTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACA
* * * * ** ** * *
12021811 GGCGTGCGGGCGCTCCGTCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATTGGCCCGGTCCCCC
387 GGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCAGGGACCGACCCGATCCCCC
*
12021876 CTGCGTACTGTCGATCCTGC-AGCCACAACCCTCGGTCCAG-TCCGATCTTAGACTAGGAATGAA
452 CTGCGTACTGTCGATCCTGCTA-CCACAACCCTCGGT-CAGATCCAATCTTAGACTAGGAATGAA
* *
12021939 CTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCC
515 CTCCGTATGCTTAGACTGGGGATCAACTCCGTATGCC
12021976 TAAATCAACC
Statistics
Matches: 477, Mismatches: 67, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
552 7 0.01
553 465 0.97
554 5 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (553 bp):
GACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAA
AACGAGCATGCGGGCGCTCAACCGATCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATC
CCCCCTGCGTGCTGTCAATCCTACTACCACAACCCTCAGTTCGCTCTGATCTTAGACTAGGAATG
AACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCAT
AATGCGCAAGCAGGGGATCGGCCCAGCCCCCCTCTACGTGCTACCAATCCCGCTGCCACAACCCT
CGATCCGACTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCG
TGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCAGGGACCGACCCGATCCCCCCTGC
GTACTGTCGATCCTGCTACCACAACCCTCGGTCAGATCCAATCTTAGACTAGGAATGAACTCCGT
ATGCTTAGACTGGGGATCAACTCCGTATGCCCC
Found at i:12021963 original size:26 final size:26
Alignment explanation
Indices: 12021922--12021974 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12021912 CCAGTCCGAT
*
12021922 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
12021948 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12021974 C
1 C
12021975 CTAAATCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12023030 original size:159 final size:158
Alignment explanation
Indices: 12022667--12023272 Score: 626
Period size: 159 Copynumber: 3.8 Consensus size: 158
12022657 AACTCCGTTT
* ** * * * * *
12022667 GCTTAGACGTGGAATGAACTCAGTATGCCTAAGCTAACCTACGGAATGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * *
12022732 CCGGCCAGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATCCCCCTTGCATGCTGTCGATCC
66 CCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCC
* * * *
12022797 TACTACCGCAACCCTCGGTCTGATCT-GA
131 CACTACCACAACCCTCGGTCT-AGCTGGG
* * * * * * *
12022825 TCTTAGA-TTGGAAATGAACTCCGTATGCATAAGTCAACCGACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACATGG-AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
12022889 GCCGACC-GAAGAGGCATAATGCGCAAGCCAAGGATCGGCCCGGTCCCCCTCTGCGTGTTGCCGG
65 ACCGACCAG-AGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCC-CTGCGTGCTGCCGA
* *
12022953 TCCCGCTACCACAACCCTTGGTCTAGCTGGG
128 TCCCACTACCACAACCCTCGGTCTAGCTGGG
* * * *
12022984 GCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTACGGGCACTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCA
** * * *
12023048 ACCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCGGCGTGCTGCCGATC
65 ACCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATC
* ** *
12023113 CCACTGCCACAACCCTCGGTCCGGCTGTG
130 CCACTACCACAACCCTCGGTCTAGCTGGG
* * * *
12023142 GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATGAAACGGGCATGCAGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGGCGCTCA
** * * * *
12023207 GTCGACCAGAGAGGCAGAATGCACAAGTCGAGGATCGACCCGATCCCCCCTACGTGCTGCCGATC
65 ACCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATC
12023272 C
130 C
12023273 TGCTGTCGCA
Statistics
Matches: 366, Mismatches: 73, Indels: 17
0.80 0.16 0.04
Matches are distributed among these distances:
157 4 0.01
158 178 0.49
159 180 0.49
160 4 0.01
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCC
CACTACCACAACCCTCGGTCTAGCTGGG
Found at i:12023317 original size:317 final size:317
Alignment explanation
Indices: 12022667--12023321 Score: 698
Period size: 317 Copynumber: 2.1 Consensus size: 317
12022657 AACTCCGTTT
* ** * * * * * * **
12022667 GCTTAGACGTGGAATGAACTCAGTATGCCTAAGCTAACCTACGGAA-TGAGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAG-GCGTACGGGCACTCA
* * * ** *
12022731 ACCGGCCAGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATCCCCCTTGCATGCTGTCGATC
65 ACCGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCGGCATGCTGCCGATC
* * * * * * *
12022796 CTACTACCGCAACCCTCGGTCTGATCTGATCTTAGATTGGAAATGAACTCCGTATGCATAAGTCA
130 CCACTACCACAACCCTCGGTCCGAGCTGATCTTAGAATGGAAATGAACTCCCTATGCATAAGCCA
* * * * *
12022861 ACCGACGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCATAATGCGCAAGCCAAGGATCG
195 ACCCACGAAACGAGCATGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCACAAGCCAAGGATCG
* * * * * * *
12022926 GCCCGGTCCCCCTCTGCGTGTTGCCGGTCCCGCTACCACAACCCTTGGTCTAGCTGGG
260 ACCCGATCCCCCTCTACGTGCTGCCGATCCCGCTACCACAACCCTCGGTCTAGCTGGA
*
12022984 GCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGCACTCAA
* * *
12023049 CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCGGCGTGCTGCCGATCC
66 CCGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCGGCATGCTGCCGATCC
*
12023114 CACTGCCACAACCCTCGGTCCG-GCTG-TGGCTTAGACATGG-AATGAACTCCCTATG-ACTAAG
131 CACTACCACAACCCTCGGTCCGAGCTGAT--CTTAGA-ATGGAAATGAACTCCCTATGCA-TAAG
* * * * *
12023175 CCAACCCATGAAACGGGCATGCAGGGCGCTCAGTCGACC-AGAGAGGCAGAATGCACAAGTCGAG
192 CCAACCCACGAAACGAGCATGC-GGGCGCTCAGCCGACCGA-AGAGGCAGAATGCACAAGCCAAG
* ** * *
12023239 GATCGACCCGATCCCCC-CTACGTGCTGCCGATCCTGCTGTCGCAACCCTCGGTCTGGTCT-GA
255 GATCGACCCGATCCCCCTCTACGTGCTGCCGATCCCGCTACCACAACCCTCGGTCTAG-CTGGA
*
12023301 TCTTAGAC-TGGGAATGAACTC
1 GCTTAGACAT-GGAATGAACTC
12023322 TGTATGCTTA
Statistics
Matches: 276, Mismatches: 53, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
315 1 0.00
316 5 0.02
317 216 0.78
318 54 0.20
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGCACTCAA
CCGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCGGCATGCTGCCGATCC
CACTACCACAACCCTCGGTCCGAGCTGATCTTAGAATGGAAATGAACTCCCTATGCATAAGCCAA
CCCACGAAACGAGCATGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCACAAGCCAAGGATCGA
CCCGATCCCCCTCTACGTGCTGCCGATCCCGCTACCACAACCCTCGGTCTAGCTGGA
Found at i:12023331 original size:26 final size:26
Alignment explanation
Indices: 12023302--12023354 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
12023292 CTGGTCTGAT
12023302 CTTAGACT-GGGAATGAAC-TCTGTATG
1 CTTAGACTAGGG-ATGAACTTC-GTATG
*
12023328 CTTAGATTAGGGATGAACTTCGTATG
1 CTTAGACTAGGGATGAACTTCGTATG
12023354 C
1 C
12023355 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTTCGTATG
Found at i:12023792 original size:366 final size:356
Alignment explanation
Indices: 12023115--12024039 Score: 1021
Period size: 366 Copynumber: 2.6 Consensus size: 356
12023105 TGCCGATCCC
* * * *
12023115 ACTGCCACAACCCTCGGTCCGGCTGTGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAAC
1 ACTGCCACAACCCTCGGTCCGACTGAGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
12023180 CCATGAAACGGGCATGCAGGGCGCTCAGTCGACCAGAGAGGCAGAATGCACAAG-TCGAGGATCG
66 CCACGAAACGAGCGTGCA-GGCGCTCAGTCGACCAGAGAGGCAGAATGCGCAAGCT-GAGGATCG
* *
12023244 ACCCGATCCCCCCTACGTGCTGCCGATCCTGCT--GTCGCAACCCTCGGTCTGGTCTGATCTTAG
129 ACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCGTCGCAACCCTCGGTCTGGTCTGATCTTAG
* * * * * *
12023307 ACTGGGAATGAACTCTGTATGCTTAGATTAGGGATGAACTTCGTATGCCTAAGTCAACCCACGAA
194 ACTGGGAATGAAATCTGTATGCTTAGAATAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAA
* * *
12023372 ACGAGCATGCGGGCGCTCAGTCGACCGGAAAGGCATAATGCACAAATCGGGGATCAGCCT-GATC
259 ACAAGCATGCGGGCGCTCAGTCGACCGGAAAGGCAGAATGCACAAATAGGGGATC-GCCTCGATC
12023436 -CCCTCTGCGTGCTGCCGATCCCGCTG-TCGGTCCT
323 TCCCTCTGCGTGCTGCC-ATCCCGCTGCT-GGTCCT
* *
12023470 ACTGCCACAACCCTCGATCTGACTGAGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ACTGCCACAACCCTCGGTCCGACTGAGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
** * * * *
12023535 TGACGAAATGAGCGTGCAGGCGCTCAGTCGGCCAGAGAGGTAGAATGCGTAAGCTGAGGATCGAC
66 CCACGAAACGAGCGTGCAGGCGCTCAGTCGACCAGAGAGGCAGAATGCGCAAGCTGAGGATCGAC
*
12023600 CCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGGTCCTGCTGCCACAACCCTCGGTCTGGTCT
131 CCGATCCCCCCTGCGTGCTGTCGATCCTGCTG-C-G---T-C-G---CAACCCTCGGTCTGGTCT
*
12023665 GATCTTAGACTGGGAATGAAATTTGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCA
186 GATCTTAGACTGGGAATGAAATCTGTATGCTTAGA-ATAGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * ** *
12023729 ACCCACAAAACAAGCGTGTGGGTGCTCAG-CTGGCTGGAGAGGTAGAATGCGTAAGTAGGGGATC
250 ACCCACAAAACAAGCATGCGGGCGCTCAGTC-GACCGGAAAGGCAGAATGCACAAATAGGGGATC
* * * *
12023793 GGCTCGGTCTCCCTTTGCGTGCTGCCATCCTGCTGCTGGTCCT
314 GCCTCGATCTCCCTCTGCGTGCTGCCATCCCGCTGCTGGTCCT
* * * * *
12023836 GCTGCCCCAACCCTCGGCCCAATCTGA-TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCA
1 ACTGCCACAACCCTCGGTCCGA-CTGAGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
12023899 ACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGGGCAAGC-CAGGGATC
64 ACCCACGAAACGAGCGTGCAGGCGCTCAGTCGACCAGAGAGGCAGAATGCGCAAGCTGA-GGATC
* * * * ** *
12023963 GGCCTGATCCCCCCCTGCGTGCTGTCGATCCTACTGC--AGCAACTTTCGGTCTGATCTGATCTT
128 GACCCGAT-CCCCCCTGCGTGCTGTCGATCCTGCTGCGTCGCAACCCTCGGTCTGGTCTGATCTT
12024026 AGACTGGGAATGAA
192 AGACTGGGAATGAA
12024040 CTCCGTATAC
Statistics
Matches: 478, Mismatches: 70, Indels: 44
0.81 0.12 0.07
Matches are distributed among these distances:
354 69 0.14
355 107 0.22
358 2 0.00
361 1 0.00
362 1 0.00
363 1 0.00
365 6 0.01
366 244 0.51
367 47 0.10
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (356 bp):
ACTGCCACAACCCTCGGTCCGACTGAGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCAGGCGCTCAGTCGACCAGAGAGGCAGAATGCGCAAGCTGAGGATCGAC
CCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCGTCGCAACCCTCGGTCTGGTCTGATCTTAGAC
TGGGAATGAAATCTGTATGCTTAGAATAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAC
AAGCATGCGGGCGCTCAGTCGACCGGAAAGGCAGAATGCACAAATAGGGGATCGCCTCGATCTCC
CTCTGCGTGCTGCCATCCCGCTGCTGGTCCT
Found at i:12023836 original size:196 final size:196
Alignment explanation
Indices: 12023497--12023880 Score: 522
Period size: 196 Copynumber: 2.0 Consensus size: 196
12023487 TCTGACTGAG
** * **
12023497 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCAGGCGCTCAG
*
12023562 TCGGCCAGAGAGGTAGAATGCGTAAGCTGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
66 TCGGCCAGAGAGGTAGAATGCGTAAGCTGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCCATCC
* ***
12023627 TGCTGCCGGTCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAATTTGTA
131 TGCTGCCGGTCCTGCTGCCACAACCCTCGGCCCAATCTGATCTTAGACTGGGAATGAAATTTGTA
12023692 T
196 T
** *
12023693 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCAGGCGCTCAG
** * * * **
12023758 -CTGGCTGGAGAGGTAGAATGCGTAAG-TAGGGGATCGGCTCGGTCTCCCTTTGCGTGCTG-CCA
66 TC-GGCCAGAGAGGTAGAATGCGTAAGCT-GAGGATCGACCCGGTC-CCCCCTGCGTGCTGTCCA
* *
12023820 TCCTGCTGCTGGTCCTGCTGCCCCAACCCTCGGCCCAATCTGATCTTAGACTGGGAATGAA
128 TCCTGCTGCCGGTCCTGCTGCCACAACCCTCGGCCCAATCTGATCTTAGACTGGGAATGAA
12023881 CTCCGTATGC
Statistics
Matches: 163, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
195 2 0.01
196 149 0.91
197 12 0.07
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.22
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCAGGCGCTCAG
TCGGCCAGAGAGGTAGAATGCGTAAGCTGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCCATCC
TGCTGCCGGTCCTGCTGCCACAACCCTCGGCCCAATCTGATCTTAGACTGGGAATGAAATTTGTA
T
Found at i:12024112 original size:159 final size:159
Alignment explanation
Indices: 12023832--12024648 Score: 838
Period size: 159 Copynumber: 5.1 Consensus size: 159
12023822 CTGCTGCTGG
** * ** * *
12023832 TCCTGCTGCCCCAACCCTCGGCCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
1 TCCTGCTGCAGCAACCCTCGGTCTGATCTGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* *
12023897 CAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGGGCAAGCCAGGGAT
66 CAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGAT
12023962 CGGCCTGATCCCCCCCTGCGTGCTGTCGA
131 CGGCCTGATCCCCCCCTGCGTGCTGTCGA
* ** * *
12023991 TCCTACTGCAGCAACTTTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGT
1 TCCTGCTGCAGCAACCCTCGGTCTGATCTGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
12024056 CAACCCACGAAACAAGCATGCGGGCACTGAGCCGACCGGAGAGGCATAATGCGCAAGTCGGGGAT
66 CAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGAT
* * * *
12024121 CGGCCTGGTCCCCCTCTGTGTGCTGTCGG
131 CGGCCTGATCCCCCCCTGCGTGCTGTCGA
* ** * * *
12024150 TCCTGCTGCCA-CAACCCTCGGTCCGGCCGGGGCTTAGACAT-GGAATGAAGTCCGTATGCCTAA
1 TCCTGCTG-CAGCAACCCTCGGTCTGATCTGAGCTTAGAC-TGGGAATGAACTCCGTATGCCTAA
* * * * * * *
12024213 GTCAACCCACGAAATGAA-CGTGCGGGTGCTTAGCTGGCCGGACAGGCAGAATGCGTAAGCCGGG
64 GTCAACCCACGAAA-CAAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGG
* * * *
12024277 GATCGGCCCGAT-CCCTCCTACATGCTGTCGA
128 GATCGGCCTGATCCCCCCCTGCGTGCTGTCGA
* * * * *
12024308 TCCTACTACAGCAACCCTTGGTCTGGTCTGACCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 TCCTGCTGCAGCAACCCTCGGTCTGATCTGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
** * * * * * * * * * *
12024373 CAACCCACGAAATGAGCATGCAGGCGCTGAGCCGATCAGAGAGGCATACTACACAAGCCGAGGAT
66 CAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGAT
* * ** * *
12024438 CGACCTGGTCCCCTTCTGTGTGTTGTCGA
131 CGGCCTGATCCCCCCCTGCGTGCTGTCGA
* * * * * *
12024467 TCCTGCTACCA-CAACCCTCAGTC-CAGCTGGGGCTTATACAT-GGAATGAACTCCGTATGCCTA
1 TCCTGCT-GCAGCAACCCTCGGTCTGATCT-GAGCTTAGAC-TGGGAATGAACTCCGTATGCCTA
* * * * * * *
12024529 AGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGTCGGG
63 AGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGG
*
12024594 GATCGGCCCGATCCCCCCCTGCGTGCTGTCGA
128 GATCGGCCTGATCCCCCCCTGCGTGCTGTCGA
12024626 TCCTGCTGCAGCAACCCTCGGTC
1 TCCTGCTGCAGCAACCCTCGGTC
12024649 CGGTCTAATC
Statistics
Matches: 528, Mismatches: 119, Indels: 22
0.79 0.18 0.03
Matches are distributed among these distances:
157 4 0.01
158 120 0.23
159 396 0.75
160 8 0.02
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (159 bp):
TCCTGCTGCAGCAACCCTCGGTCTGATCTGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGAT
CGGCCTGATCCCCCCCTGCGTGCTGTCGA
Found at i:12024418 original size:317 final size:317
Alignment explanation
Indices: 12023864--12024654 Score: 1093
Period size: 317 Copynumber: 2.5 Consensus size: 317
12023854 CCAATCTGAT
* *
12023864 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGAA-CGTGCGGGTGCTCAG
* * * *
12023928 CCGACCGGAGAGGCAGAATGGGCAAGCCAGGGATCGGCCTGATCCCCCCCTGCGTGCTGTCGATC
64 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCCTGCGTGCTGTCGATC
* * *
12023993 CTACTGCAGCAA-CTTTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGTC
129 CTACTGCAGCAACCCTT-GGTCTGGTCTGACCTTAGACTGGGAATGAACTCCGTATACCTAAGTC
* * * * * *
12024057 AACCCACGAAACAAGCATGCGGGCACTGAGCCGACCGGAGAGGCATAATGCGCAAGTCGGGGATC
193 AACCCACGAAACAAGCATGCAGGCACTGAGCCGACCAGAGAGGCATAATACACAAGCCGAGGATC
* * * * *
12024122 GGCCTGGTCCCCCTCTGTGTGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGCCGGGG
258 GACCTGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACCACAACCCTCAGTCCAGCCGGGG
* * *
12024182 CTTAGACATGGAATGAAGTCCGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGTGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GAACGTGCGGGTGCTCAGC
* * * * * *
12024247 TGGCCGGACAGGCAGAATGCGTAAGCCGGGGATCGGCCCGAT-CCCTCCTACATGCTGTCGATCC
65 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCCTGCGTGCTGTCGATCC
* *
12024311 TACTACAGCAACCCTTGGTCTGGTCTGACCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
130 TACTGCAGCAACCCTTGGTCTGGTCTGACCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAA
** * * *
12024376 CCCACGAAATGAGCATGCAGGCGCTGAGCCGATCAGAGAGGCATACTACACAAGCCGAGGATCGA
195 CCCACGAAACAAGCATGCAGGCACTGAGCCGACCAGAGAGGCATAATACACAAGCCGAGGATCGA
* * *
12024441 CCTGGTCCCCTTCTGTGTGTTGTCGATCCTGCTACCACAACCCTCAGTCCAGCTGGGG
260 CCTGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACCACAACCCTCAGTCCAGCCGGGG
* * *
12024499 CTTATACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GAACGTGCGGGTGCTCAGC
* *
12024564 CGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCCTGCGTGCTGTCGATCC
65 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCCTGCGTGCTGTCGATCC
* * *
12024629 TGCTGCAGCAACCCTCGGTCCGGTCT
130 TACTGCAGCAACCCTTGGTCTGGTCT
12024655 AATCAATTTT
Statistics
Matches: 411, Mismatches: 58, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
317 274 0.67
318 134 0.33
319 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (317 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGAACGTGCGGGTGCTCAGCC
GGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCCTGCGTGCTGTCGATCCT
ACTGCAGCAACCCTTGGTCTGGTCTGACCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAAC
CCACGAAACAAGCATGCAGGCACTGAGCCGACCAGAGAGGCATAATACACAAGCCGAGGATCGAC
CTGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACCACAACCCTCAGTCCAGCCGGGG
Found at i:12025262 original size:26 final size:26
Alignment explanation
Indices: 12025224--12025276 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
12025214 GGCTCAAAAT
12025224 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACATC-GTATG
12025250 CTTAGACAT-GGAATGAACATCGTATG
1 CTTAGAC-TGGGAATGAACATCGTATG
12025276 C
1 C
12025277 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACATCGTATG
Found at i:12026186 original size:26 final size:26
Alignment explanation
Indices: 12026148--12026200 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
12026138 GGCTCAAAAT
* *
12026148 CTTAGACTGGGAACGAACTCTGTATG
1 CTTAGACTGGGAACGAACACTATATG
*
12026174 CTTAGACAT-GGAATGAACACTATATG
1 CTTAGAC-TGGGAACGAACACTATATG
12026200 C
1 C
12026201 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACACTATATG
Found at i:12026665 original size:25 final size:27
Alignment explanation
Indices: 12026615--12026668 Score: 76
Period size: 25 Copynumber: 2.1 Consensus size: 27
12026605 CCCGTCTGAT
**
12026615 CTTAGACTGGGAATGAAACTTTGTATG
1 CTTAGACTGGGAATGAAACTCCGTATG
12026642 CTTAGACTGGG-ATG-AACTCCGTATG
1 CTTAGACTGGGAATGAAACTCCGTATG
12026667 CT
1 CT
12026669 AAGTCAACCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 11 0.44
26 3 0.12
27 11 0.44
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (27 bp):
CTTAGACTGGGAATGAAACTCCGTATG
Found at i:12027696 original size:159 final size:156
Alignment explanation
Indices: 12027333--12027733 Score: 448
Period size: 159 Copynumber: 2.5 Consensus size: 156
12027323 ATGGCTCAAA
* * * *
12027333 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAATGAGCATGCGGGCGCTCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGC-GGCGCTGA
* * * *
12027398 GCCGGTCGGAGAGGCAAAATGCACAAGACGGGGATTAGCCCGATCCCCCTGTATGCTGTCGATCC
65 GCCGGTCGAAGAGGCATAATACACAAGACGGGGATCAGCCCGATCCCCCTGTATGCTGTCGATCC
* * * *
12027463 TACTGTCGCAACCCTGGGTCTGATCTG
130 TACTGTCGCAAACCTCGGTCCGATCTC
* *
12027490 ATCTTAGACAT-AGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGTGTGCGGACGCTG
1 ATCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGG-CGCTG
* * * * *
12027554 AGCCGGTCGAAGAGGCATAATACGCAAG-CTGGGGATCGGCTCGATCCCCCTCTGTGTGTTGTCG
64 AGCCGGTCGAAGAGGCATAATACACAAGAC-GGGGATCAGCCCGAT-CCCC-CTGTATGCTGTCG
* *
12027618 ATCCTACTGTTGCAAACCTCGGTCCGGTC-C
126 ATCCTACTGTCGCAAACCTCGGTCCGATCTC
* *** *
12027648 ACTCTTACACTGGGAATGAACTCCGTATGCATAAGTCAACCTGGGAAATGAGCGTGCAGGCACTG
1 A-TCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGC-GGCGCTG
** *
12027713 AGCCGACCGAAGAGGAATAAT
64 AGCCGGTCGAAGAGGCATAAT
12027734 GCTTAAGCCA
Statistics
Matches: 205, Mismatches: 31, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
156 3 0.01
157 89 0.43
158 7 0.03
159 104 0.51
160 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.27, T:0.21
Consensus pattern (156 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGCGCTGAG
CCGGTCGAAGAGGCATAATACACAAGACGGGGATCAGCCCGATCCCCCTGTATGCTGTCGATCCT
ACTGTCGCAAACCTCGGTCCGATCTC
Found at i:12027797 original size:159 final size:159
Alignment explanation
Indices: 12027502--12027800 Score: 341
Period size: 159 Copynumber: 1.9 Consensus size: 159
12027492 CTTAGACATA
* * **
12027502 GAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGTGTGCGGACGCTGAGCCGGTCGAAGA
1 GAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGACACTGAGCCGACCGAAGA
* *** * * ** * ***
12027567 GGCATAATACGCAAGCTGGGGATCGGCTCGATCCCCCTCTGTGTGTTGTCGATCCTACTGTTGCA
66 GGAATAATACGCAAGCCAAGGATCGGCTCGACCCCCCTCTGCGTGCAGTCGATCCCACTGCCACA
12027632 AACCTCGGTCCGGTCCACTCTTACACTGG
131 AACCTCGGTCCGGTCCACTCTTACACTGG
***
12027661 GAATGAACTCCGTATGCATAAGTCAACCTGGGAAATGAGCGTGCAGG-CACTGAGCCGACCGAAG
1 GAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGC-GGACACTGAGCCGACCGAAG
* ** * *
12027725 AGGAATAATGCTTAAGCCAAGGATCGGC-CTGGCCCCCCTCTGCGTGCAGTCGATCCCGCTGCCA
65 AGGAATAATACGCAAGCCAAGGATCGGCTC-GACCCCCCTCTGCGTGCAGTCGATCCCACTGCCA
*
12027789 CAACCCTCGGTC
129 CAAACCTCGGTC
12027801 TGGCTGGGGT
Statistics
Matches: 113, Mismatches: 25, Indels: 4
0.80 0.18 0.03
Matches are distributed among these distances:
158 1 0.01
159 110 0.97
160 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
GAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGACACTGAGCCGACCGAAGA
GGAATAATACGCAAGCCAAGGATCGGCTCGACCCCCCTCTGCGTGCAGTCGATCCCACTGCCACA
AACCTCGGTCCGGTCCACTCTTACACTGG
Found at i:12028016 original size:25 final size:26
Alignment explanation
Indices: 12027968--12028019 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
12027958 CCGATCTGAT
*
12027968 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
12027994 CTTAAACTGGG-ATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
12028019 C
1 C
12028020 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:12028352 original size:26 final size:26
Alignment explanation
Indices: 12028314--12028366 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12028304 CTGGTCTGAT
*
12028314 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12028340 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12028366 C
1 C
12028367 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12028768 original size:159 final size:157
Alignment explanation
Indices: 12028339--12028842 Score: 485
Period size: 159 Copynumber: 3.2 Consensus size: 157
12028329 AACTCCGTAT
* * * *
12028339 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCCCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACG-GCGTGCGGGCGCTCAG
* * * * * * *
12028404 CCGACCGGAGAGGTAGAATGCACAAGCCAGGGATCGGCCCAGTCCCCCCACGCGTGCTGTCGATC
65 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCC-TGCGTGCTGTCGATC
* * * * ** *
12028469 CTGTTGACGCAACTCTCGATCTGGTCTAT
129 CTGCTGCCGCAACCCTCGGTCCAGTCTAG
* * * * * *
12028498 TCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGGGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAA-CGGCGTGCGGGCGCTCA
** * * * * ** * * * * *
12028562 GCTAGCCGGAGAGTCATAATGCGTAAATCGGGGATCAACCCGATCCCCTTCTGCGTGGTGCCGGT
64 GCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCC-CCTGCGTGCTGTCGAT
* *
12028627 CCTGCTGCCACAACCCTCGGTCCAG-CTGGG
128 CCTGCTGCCGCAACCCTCGGTCCAGTCT-AG
*
12028657 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAC-GGCGTGCGGGCGCTCAG
* * *
12028722 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATTGGCTCGGTCCCCCCTGTGTGCTGTCGATCC
65 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* *
12028787 TGCTACCGCAACCCTCGGTCCAGTC-CG
130 TGCTGCCGCAACCCTCGGTCCAGTCTAG
*
12028814 ATCTTAGAC-TGGGAATGAACTCCATATGC
1 -GCTTAGACAT-GGAATGAACTCCATATGC
12028843 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 67, Indels: 19
0.76 0.19 0.05
Matches are distributed among these distances:
157 2 0.01
158 61 0.23
159 203 0.75
160 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTCGGTCCAGTCTAG
Found at i:12028845 original size:26 final size:26
Alignment explanation
Indices: 12028816--12028868 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12028806 CCAGTCCGAT
12028816 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
12028842 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12028868 C
1 C
12028869 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12029592 original size:26 final size:26
Alignment explanation
Indices: 12029554--12029609 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
12029544 GGCTCAAAAT
* *
12029554 CTTAGACTGGGAATGAAGTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12029580 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12029606 CTTA
1 CTTA
12029610 AGCCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12030082 original size:157 final size:157
Alignment explanation
Indices: 12029580--12030354 Score: 569
Period size: 158 Copynumber: 4.8 Consensus size: 157
12029570 AGTTCGTATG
* * * * *
12029580 CTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCATGGAACGAGCATGCGAGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * * * * *
12029645 TGGCCAAAGAGGCAGAATGCGCAAG-CTGGGGATC-GACCTGATCCCCCTTGCGTGTTGTCGATC
66 CGACCGAAGAGGCAGAATGCGCAAGTC-GAGGATCAG-CCCGATCCCCCCTGTGTGCTGTCGATC
* **
12029708 CTGCTACTGCAACCCTCAGTCCAGTCCAAT
129 CTGCTACCGCAACCCTCAGTCCA-TCTGAT
* * * * * ** *
12029738 CTTAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTACGGATGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * ** * * *
12029802 TCGGCCGAATAGGCATAATGCGCTGGTCGAGGATCAGCCCGGTTCCCCTCTGTGTGCTG-CCAGT
65 CCGACCGAAGAGGCAGAATGCGCAAGTCGAGGATCAGCCC-GATCCCCCCTGTGTGCTGTCGA-T
* * * * **
12029866 CCTGCTGCCACAACCCTCGGTCCAGCTGGGG
128 CCTGCTACCGCAACCCTCAGTCCATCT-GAT
* * * *
12029897 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCATGTGGGCACTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCATGCGGGCGCTCAG
* * *
12029961 CCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATC-GACCCGATCCCCCCTGTGCGCTGTCGATC
65 CCGACCGAAGAGGCAGAATGCGCAAGTCGAGGATCAG-CCCGATCCCCCCTGTGTGCTGTCGATC
* *
12030025 CTACT-CCGCAACCCTCAGTTCGATCTGAT
129 CTGCTACCGCAACCCTCAG-TCCATCTGAT
* * *
12030054 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * * *
12030118 CCTATCGGAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGATGCTGATC
65 CCGACCGAAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCGATCCCCC-CT--GTG-TGC---T-
* * * * * * **
12030183 CCGCTGCCGGTCCTGCTGCCACAACCCTCAATCCAGCCGGGG
122 --G-T--CGATCCTGCTACCGCAACCCTCAGTCCA-TCTGAT
* * * *
12030225 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGC-TTCGGGAGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * * * *
12030289 CGATCGTAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTTCCCCCCTGCGTGCTGTCGATCC
66 CGACCGAAGAGGCAGAATGCGCAAGTCGAGGATCAGCC-CGATCCCCCCTGTGTGCTGTCGATCC
12030354 T
130 T
12030355 ACTGCTGGTC
Statistics
Matches: 480, Mismatches: 106, Indels: 62
0.74 0.16 0.10
Matches are distributed among these distances:
156 1 0.00
157 106 0.22
158 118 0.25
159 117 0.24
160 5 0.01
161 3 0.01
164 2 0.00
167 4 0.01
168 3 0.01
170 55 0.11
171 65 0.14
172 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
CGACCGAAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCGATCCCCCCTGTGTGCTGTCGATCCT
GCTACCGCAACCCTCAGTCCATCTGAT
Found at i:12030168 original size:316 final size:324
Alignment explanation
Indices: 12029579--12030357 Score: 895
Period size: 317 Copynumber: 2.4 Consensus size: 324
12029569 AAGTTCGTAT
* * * * *
12029579 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCATGGAACGAGCATGCGAGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGTGGGCACTCAA
* * * * * *
12029644 CTGGCCAAAGAGGCAGAATGCGCAAG-CTGGGGATCGACCTGATCCCCCTTGCGTGTTGTCGATC
66 CCGACCGAAGAGGCAGAATGCGCAAGTC-GGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATC
* * *
12029708 CTGCTACTGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCATAAGTCA
130 CTACTACCGCAACCCTCAGTCCAGTCCAATCTTAGACTAGGAATGAACTCCATATGCATAAGTCA
* * * * * * *
12029773 ACCCACGAAACGAGCGTACGGATGCTGAGTCGGCCGAATAGGCATAATGCGCTGGTCGAGGATCA
195 ACCCACGAAACGAGCGTACGGACGCTCAGCCGACCGAAGAGGCATAATGCGCTAGCCGAGGATCA
* * ** *
12029838 GCCCGGT-TCCC-CT-C-TG-TG-T-GCTGCCAGTCCTGCTGCCACAACCCTCGGTCCAGCTGGG
260 GCCCGATCCCCCTCTGCGTGCTGATCGCTGCCAGTCCTGCTGCCACAACCCTCAATCCAGCCGGG
*
12029896 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCATGTGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCATGTGGGCACTCA
* * * *
12029960 GCCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGTGCGCTGTCGATC
65 ACCGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATC
* ** * *
12030025 CTACT-CCGCAACCCTCAGTTC-GATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
130 CTACTACCGCAACCCTCAGTCCAG-TCCAATCTTAGACTAGGAATGAACTCCATATGCATAAGTC
* * * * * *
12030088 AACCCACGAAATGAGCGTGCGGGCGCTCAGCCTATCGGAGAGGCATAATGCG-TAAGCCGAGGAT
194 AACCCACGAAACGAGCGTACGGACGCTCAGCCGACCGAAGAGGCATAATGCGCT-AGCCGAGGAT
*
12030152 CAGCCCGATCCCCCTCTGCGTGATGCTGATCCCGCTGCCGGTCCTGCTGCCACAACCCTCAATCC
258 CAGCCCGATCCCCCTCTGC--G-TGCTGAT--CGCTGCCAGTCCTGCTGCCACAACCCTCAATCC
12030217 AGCCGGG
318 AGCCGGG
* *
12030224 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGC-T-TCGGG-AGCTC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGT-GGGCA-CTC
* * * * *
12030286 AACCGATCGTAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTTCCCCCCTGCGTGCTGTCGA
64 AACCGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACC-CGATCCCCCCTGCGTGCTGTCGA
12030351 TCCTACT
128 TCCTACT
12030358 GCTGGTCTTG
Statistics
Matches: 388, Mismatches: 54, Indels: 29
0.82 0.11 0.06
Matches are distributed among these distances:
315 2 0.01
316 107 0.28
317 116 0.30
318 3 0.01
319 1 0.00
323 2 0.01
324 2 0.01
325 1 0.00
326 2 0.01
327 44 0.11
328 107 0.28
329 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (324 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGTGGGCACTCAA
CCGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
TACTACCGCAACCCTCAGTCCAGTCCAATCTTAGACTAGGAATGAACTCCATATGCATAAGTCAA
CCCACGAAACGAGCGTACGGACGCTCAGCCGACCGAAGAGGCATAATGCGCTAGCCGAGGATCAG
CCCGATCCCCCTCTGCGTGCTGATCGCTGCCAGTCCTGCTGCCACAACCCTCAATCCAGCCGGG
Found at i:12031967 original size:26 final size:26
Alignment explanation
Indices: 12031917--12031969 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12031907 CCAGTCTGAT
* **
12031917 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
12031943 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
12031969 C
1 C
12031970 CTAGGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Done.