Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 78 of 402
Found at i:12032151 original size:26 final size:26
Alignment explanation
Indices: 12032113--12032165 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12032103 CTGGTCCGAT
*
12032113 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12032139 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12032165 C
1 C
12032166 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12032487 original size:159 final size:157
Alignment explanation
Indices: 12032138--12032641 Score: 478
Period size: 159 Copynumber: 3.2 Consensus size: 157
12032128 AACTTCGTAT
* *
12032138 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAG
* * * ** * * *
12032203 TCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGAACAGTTTGGTCCCTCCTGCGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAAAATGCGCAAGTCGGGGATC-GTCCGGTCCCCCCTACGTGCTGCCGATCC
* * * *
12032268 TACTATCGCAACCCTCAGTCTGGTCCGA
130 TACAACCACAACCCTCAGTCCGGTCCGA
* * * * * *
12032296 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTTCGGGTGTTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCA
* * *
12032360 GCCGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGGTCCGGTCCCCCACTACATGCTGCC-AG
65 GCCGGCCGGAGAGGCAAAATGCGCAAGTCGGGGATC-GTCCGGTCCCCC-CTACGTGCTGCCGA-
* * *
12032424 T-CTCGCAACCACAACCCTCAGTCCGG-CTGGG
127 TCCT-ACAACCACAACCCTCAGTCCGGTC-CGA
* * * *
12032455 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAG
* * * * *
12032520 CCAGCCGGAGAGGCAAAATGCGTAAGCCGGGGATCATCCTGGTCCCCCCCTACGTGCTGTCGATC
66 CCGGCCGGAGAGGCAAAATGCGCAAGTCGGGGATCGTCC-GGT-CCCCCCTACGTGCTGCCGATC
* * * * ** * *
12032585 CTGCTATCGCAACCCTTGGTCTGGTCTGA
129 CTACAACCACAACCCTCAGTCCGGTCCGA
* *
12032614 TCTTAGAC-TGGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
12032642 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 56, Indels: 23
0.78 0.16 0.06
Matches are distributed among these distances:
157 1 0.00
158 103 0.37
159 164 0.59
160 10 0.04
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAAAATGCGCAAGTCGGGGATCGTCCGGTCCCCCCTACGTGCTGCCGATCCT
ACAACCACAACCCTCAGTCCGGTCCGA
Found at i:12032651 original size:26 final size:26
Alignment explanation
Indices: 12032615--12032667 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12032605 CTGGTCTGAT
*
12032615 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12032641 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12032667 C
1 C
12032668 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12033375 original size:26 final size:26
Alignment explanation
Indices: 12033337--12033389 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12033327 GGCTCAAACT
12033337 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
12033363 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
12033389 C
1 C
12033390 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12033715 original size:26 final size:26
Alignment explanation
Indices: 12033679--12033731 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12033669 CTGGTCTGAT
*
12033679 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12033705 CTTAGACTGGGCATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12033731 C
1 C
12033732 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12034339 original size:159 final size:157
Alignment explanation
Indices: 12033913--12034360 Score: 384
Period size: 159 Copynumber: 2.8 Consensus size: 157
12033903 AACTCCATAT
* * * * *
12033913 GCTTAGGCATGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACGAGCGTGCGGCCACTCAG
1 GCTTAGAC-TGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
12033978 TCGGCCAGAGAGGTAGAATGCGCAAGTCGGGGACCGGTTTGGTCCCCCCTTGCGTGCTGTCGATC
65 CCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCC-TGCGTGCTGCCGATC
* * * *
12034043 CTGCTATCGTAACCCTCGATTCGGTCTGA
129 CCGCTACCATAACCCTCGAGTCGGTCTGA
* * * ** * * *
12034072 TCTTAGACTGGGAAAGAACTCTGTATGCCTAAGTCAACCCACAAAACTAGC--GCTGGCGCATTG
1 GCTTAGACT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGC--TC
* * * ** * * * *
12034135 AGCCGGTCGGAGAGGCATAATTTGCAAGCTGAGGATCGACCCGGTCCCCCTCTGCGTGCTGCC-A
63 AGCCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCC-CTGCGTGCTGCCGA
* *
12034199 GTCCCGCTGCCATAACCCTC-AGTCTGG-CTGGG
127 -TCCCGCTACCATAACCCTCGAGTC-GGTCT-GA
* *
12034231 GCTTAGACGTGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGAC-TGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * ** *
12034296 CCGACCGGAGAGGTAGAATGCGTAAGCCGGGGATTGGCTCGGTCTGCCCTGCGTGCTACCGATCC
65 CCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGATCC
12034361 TGCTGTCGCA
Statistics
Matches: 218, Mismatches: 60, Indels: 23
0.72 0.20 0.08
Matches are distributed among these distances:
157 5 0.02
158 21 0.10
159 183 0.84
160 2 0.01
161 7 0.03
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGATCCC
GCTACCATAACCCTCGAGTCGGTCTGA
Found at i:12034786 original size:26 final size:26
Alignment explanation
Indices: 12034757--12034809 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12034747 CCGGTCTGAT
12034757 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
12034783 CTTAGTCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12034809 C
1 C
12034810 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12034805 original size:184 final size:183
Alignment explanation
Indices: 12034598--12035160 Score: 533
Period size: 196 Copynumber: 3.0 Consensus size: 183
12034588 TCCGGCTGGG
**
12034598 GCTTAGACATGGAATGAACTCCGTATGTGTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAA
* * **
12034663 CCGACCGAAAAGGTAGAATGCGCAAGTCGGGGATCGGTTCGGT-CCCCCCTGCGTGCCGTCGATC
66 CCGATCGAAAAGGCAGAATGCGCAAGTCGGGGATC-GACCGGTCCCCCCCTGCGTGCCGTCGATC
*
12034727 CTGTTTCCACAACACTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
130 CTGTTTCCGCAAC-CTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * * *
12034782 GCTTAGTC-TGGGGATGAACTCCGTATGCCTAAGCCAACCCATGAAACGACCGTACGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
*** *
12034846 ACCGATC-AAAGAGGCAGAATGCATGAGTCGGGTATCGACCTGGTCCCCCCTACATGCTGTTGAT
65 ACCGATCGAAA-AGGCAGAATGCGCAAGTCGGGGATCGACC-GGTCCCCCC--C-TGC-G-TG--
* * * * * *
12034910 CC-TACTGCTAGTCCTGCTGCCGCAACCTTCGGTCTGGTTTAATCTTAGACTGGGAATGAACTAC
121 CCGT-C-G--A-TCCTGTTTCCGCAACC-TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
12034974 GTAT
180 GTAT
* * *
12034978 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAA
* * * * * * * * * ** *
12035043 TCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGACCAGCCCGCTCCCCCCCAACGTGCTGTCGATC
66 CCGATCGAAAAGGCAGAATGCGCAAGTCGGGGATC-GACCGGTCCCCCCCTGCGTGCCGTCGATC
* *
12035108 CTGCTAT-CGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
130 CTG-TTTCCGCAA-CCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
12035161 TTGCCTAAGT
Statistics
Matches: 298, Mismatches: 58, Indels: 45
0.74 0.14 0.11
Matches are distributed among these distances:
183 6 0.02
184 82 0.28
185 48 0.16
186 3 0.01
187 1 0.00
188 4 0.01
189 3 0.01
190 3 0.01
191 3 0.01
192 4 0.01
193 2 0.01
194 1 0.00
195 2 0.01
196 131 0.44
197 5 0.02
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAA
CCGATCGAAAAGGCAGAATGCGCAAGTCGGGGATCGACCGGTCCCCCCCTGCGTGCCGTCGATCC
TGTTTCCGCAACCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:12035491 original size:26 final size:26
Alignment explanation
Indices: 12035455--12035533 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
12035445 CCAGTCCAAT
*
12035455 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGTATGAACTTCGTATG
* * *
12035481 CTTAGACTGGGTATAAACTCCATATG
1 CTTAGACTGGGTATGAACTTCGTATG
12035507 CTTAGACTGGGTATGAACTTCGTATG
1 CTTAGACTGGGTATGAACTTCGTATG
12035533 C
1 C
12035534 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGTATGAACTTCGTATG
Found at i:12036452 original size:158 final size:158
Alignment explanation
Indices: 12036219--12036562 Score: 424
Period size: 158 Copynumber: 2.2 Consensus size: 158
12036209 AACTCCGTAT
* * * *
12036219 GCTTAGACATGGAATGAACTCCGGATGCCTAAGCCGACCCATGAAATGAGCGTGCGGGCATTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
* * * * ** *
12036284 CCAGCTGGAGAGGCAGAATGCGCAAGACG-GGATCGGCCCGGTCCCCCTCTGTGTGCTACAGGTC
66 CCAGCCGGAGAGGCAAAATACGCAAGACGAGGATCGGCCCAGTCCCCCT-TGCATGCTACAGATC
*
12036348 CCACTGCCACAACCCTCAGTCTGG-CTGGG
130 CCACTGCCACAACCCTCAGTCTGGTCT-GA
* * * *
12036377 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCATGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
** * *
12036442 CTGGCCGGAGAGGCAAAATACGCAAGTCGAGGATCGGCCCAGTCCCCCTTGCATGCTACCGATCC
66 CCAGCCGGAGAGGCAAAATACGCAAGACGAGGATCGGCCCAGTCCCCCTTGCATGCTACAGATCC
* * *
12036507 TACTGCCGCAACCCTCGGTCTGGTCTGA
131 CACTGCCACAACCCTCAGTCTGGTCTGA
*
12036535 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
12036563 TTAGACTGGG
Statistics
Matches: 158, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
157 1 0.01
158 137 0.87
159 20 0.13
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
CCAGCCGGAGAGGCAAAATACGCAAGACGAGGATCGGCCCAGTCCCCCTTGCATGCTACAGATCC
CACTGCCACAACCCTCAGTCTGGTCTGA
Found at i:12036572 original size:26 final size:26
Alignment explanation
Indices: 12036536--12036614 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
12036526 CTGGTCTGAT
*
12036536 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
12036562 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
12036588 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
12036614 C
1 C
12036615 CTATGCCAAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:12036796 original size:26 final size:26
Alignment explanation
Indices: 12036758--12036810 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12036748 CTGGTCTGAT
12036758 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12036784 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12036810 C
1 C
12036811 CAAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12038334 original size:26 final size:26
Alignment explanation
Indices: 12038298--12038353 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
12038288 CTGGTCTGAT
12038298 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
12038324 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
12038350 CTTA
1 CTTA
12038354 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:12038550 original size:26 final size:26
Alignment explanation
Indices: 12038495--12038544 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
12038485 CCGATTCGAT
12038495 CTTAGACTGGGAATGAACTCTGTACA
1 CTTAGACTGGGAATGAACTCTGTACA
12038521 CTTAGACAT-GGAATGAACTCTGTA
1 CTTAGAC-TGGGAATGAACTCTGTA
12038545 TGCTTAAGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTACA
Found at i:12039032 original size:26 final size:26
Alignment explanation
Indices: 12038996--12039048 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12038986 CTGGTTCGAT
*
12038996 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12039022 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
12039048 C
1 C
12039049 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12039404 original size:26 final size:26
Alignment explanation
Indices: 12039375--12039427 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12039365 CCAGTCCGAT
12039375 CTTAGAC-TCCGAATGAACTCCGTATG
1 CTTAGACAT-CGAATGAACTCCGTATG
*
12039401 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATCGAATGAACTCCGTATG
12039427 C
1 C
12039428 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATCGAATGAACTCCGTATG
Found at i:12039746 original size:159 final size:158
Alignment explanation
Indices: 12039404--12039862 Score: 406
Period size: 159 Copynumber: 2.9 Consensus size: 158
12039394 CCGTATGCTT
*
12039404 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAACGTACAGGCACTCAGCTAG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAACGTACAGGCACTCAGCCAG
* * * *
12039469 CCGGAGAGGCAGAATGCATAAACCGGGGATTAACCCGGTCCCCCCTGCGTGCAGTCGATCCTACT
66 CCGGAGAGGCAGAATGCACAAACCGAGGATCAACCCGATCCCCCCTGCGTGCAGTCGATCCTACT
* * * * * *
12039534 GTCACAACCCTCAGTTTGATCTGATCTT
131 GCCACAACCCTCAATTCGAGCTGAGCTA
* * * * * * * ** * *
12039562 AGAC-TGGGAATGAACTCTGTATGCCTAAGACAACCCCCGAAACGAGCGTGCGGGTGCTGAGCCG
1 AGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAACGTACAGGCACTCAGCCA
* * * * ** * *
12039626 GCCGGAGAGGCATAATGCGCAAGCTGAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCCTG
65 GCCGGAGAGGCAGAATGCACAAACCGAGGATCAACCCGATCCCCC-CTGCGTGCAGTCGATCCTA
*
12039691 CTGCCACAACCCTCAATTCG-GCTGGGGCTA
129 CTGCCACAACCCTCAATTCGAGCT-GAGCTA
* * * * * *
12039721 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCATACAAAATGTACGTACGGGCACTCAACC-
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACC-CACAAAACGAACGTACAGGCACTCAGCCA
* ** * * * *
12039785 GACCGAAGAGGCAGAAT--ACGAAAGTTGGGGATCAACCCGATCCCCCATGCATGCTGTCGATCC
65 G-CCGGAGAGGCAGAATGCAC-AAA-CCGAGGATCAACCCGATCCCCCCTGCGTGCAGTCGATCC
* *
12039848 TATTGCCGCAACCCT
127 TACTGCCACAACCCT
12039863 TTCTCTGGTC
Statistics
Matches: 235, Mismatches: 58, Indels: 15
0.76 0.19 0.05
Matches are distributed among these distances:
157 1 0.00
158 88 0.37
159 97 0.41
160 49 0.21
ACGTcount: A:0.27, C:0.31, G:0.25, T:0.18
Consensus pattern (158 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAACGTACAGGCACTCAGCCAG
CCGGAGAGGCAGAATGCACAAACCGAGGATCAACCCGATCCCCCCTGCGTGCAGTCGATCCTACT
GCCACAACCCTCAATTCGAGCTGAGCTA
Found at i:12040859 original size:159 final size:157
Alignment explanation
Indices: 12040630--12041092 Score: 461
Period size: 159 Copynumber: 2.9 Consensus size: 157
12040620 GTACGCTTAG
* * *
12040630 ACATGGAATGAACT-CGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGTC
1 ACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GAC
* * *
12040694 -AGAGAGGCAGAATGCGCAAACCAGGGATCGGCCCGGACCCCACCTACCTGCTGTCGATCCTGCT
65 GA-AGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGACCCC-CCTGCATGCTGTCGATCCTGCT
* * *
12040758 TCCGCAACCCTCGATCTGGCTCAATCTCAA
128 ACCGCAACCCTCGGTCTGGCTCAAGCTCAA
* * * * *
12040788 AC-TAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGTGCGTGCGGGCGCTAAACCGAC
1 ACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA-
* * ** * * **
12040852 CGAAGAGGCATAATGCACAAGCTGGGGATCGACCCGGTCCCCCTCTGCATGCTGTCGATCCCACT
64 CGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGACCCCC-CTGCATGCTGTCGATCCTGCT
* * *** * *
12040917 GCCACAACCCTCGGTCTGGCTGGGGCTTAG
128 ACCGCAACCCTCGGTCTGGCTCAAGCTCAA
* *
12040947 ACATGGAATAAACTCAC-TATGCCA-AAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGA
1 ACATGGAATGAACTC-CGTATG-CATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA
* * * * **
12041010 TGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCC-GATCCCTCCTGTGTGCTGTCGATCCTGCT
64 CGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGA-CCCCCCTGCATGCTGTCGATCCTGCT
*
12041074 ACCGTAACCCTCGGTCTGG
128 ACCGCAACCCTCGGTCTGG
12041093 TCCGATCTTA
Statistics
Matches: 245, Mismatches: 51, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
157 35 0.14
158 45 0.18
159 160 0.65
160 5 0.02
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (157 bp):
ACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACG
AAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGACCCCCCTGCATGCTGTCGATCCTGCTACC
GCAACCCTCGGTCTGGCTCAAGCTCAA
Found at i:12042336 original size:158 final size:157
Alignment explanation
Indices: 12041865--12042374 Score: 429
Period size: 158 Copynumber: 3.2 Consensus size: 157
12041855 TTAGACATGC
* * * * *
12041865 AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGAGCGCTCAACCGGTCGGAGAG
1 AATGAACTCCATATGCCAAAGCCAACCCACAAAATGAGCATGCGAGCGCTCAGCCGATCGGAGAG
* * * * * *
12041930 GCAGAATGA-GCAAGCCGGGGATCAACCCGGTCCCCTCTGCGTGCTGTCGATCTTGCTACCGTAA
66 GCAGAAT-ACGCAAGCCGGGGATCAACCCGATCCCCTCTGTGTGCTGTCGATCCTACTGCCGCAA
* * **
12041994 CCCTCGGTCCAGTCCAATCTTAGACTGGG
130 CCCTCGTTCGA-TCTGATCTTAGACTGGG
* * * *** * * * *
12042023 AATGAAC-CTCATATG-CATAAGTCAACCCACGAAAATGAGCGTACGAATACTGAGCCAACCGAA
1 AATGAACTC-CATATGCCA-AAGCCAACCCAC-AAAATGAGCATGCGAGCGCTCAGCCGATCGGA
* * ** * ** * * *
12042086 GAGGCATAATGCGCTGGTCGGGGATCGGCCCGGTTCCCCTCTGTGTGCTG-CCAGTCCCACTGCC
63 GAGGCAGAATACGCAAGCCGGGGATCAACCC-GATCCCCTCTGTGTGCTGTCGA-TCCTACTGCC
* * * * **
12042150 ACAACCATCGGTCCG-GCTGGGGCTTAGACAT-GG
126 GCAACCCTC-GTTCGATCT-GATCTTAGAC-TGGG
* * * *
12042183 AATGAACTCCCTATGCCAAAGCCAACCCACCAAATGGGCATGCGGGCGCTCAGCCGATCGGAGAG
1 AATGAACTCCATATGCCAAAGCCAACCCACAAAATGAGCATGCGAGCGCTCAGCCGATCGGAGAG
* * *
12042248 GCAGAATACGCAAGCCGAGGATCAACCCGATCCCCCCTGTGTGCTGTCGATCCTACTGTCGCAAC
66 GCAGAATACGCAAGCCGGGGATCAACCCGATCCCCTCTGTGTGCTGTCGATCCTACTGCCGCAAC
12042313 CCTCAGTTCGATCTGATCTTAGACTGGG
131 CCTC-GTTCGATCTGATCTTAGACTGGG
* *
12042341 AATGAACTCCATATGCCTAAGTCAACCCACAAAA
1 AATGAACTCCATATGCCAAAGCCAACCCACAAAA
12042375 CAAGTGTGCG
Statistics
Matches: 260, Mismatches: 78, Indels: 28
0.71 0.21 0.08
Matches are distributed among these distances:
157 3 0.01
158 98 0.38
159 93 0.36
160 60 0.23
161 6 0.02
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.18
Consensus pattern (157 bp):
AATGAACTCCATATGCCAAAGCCAACCCACAAAATGAGCATGCGAGCGCTCAGCCGATCGGAGAG
GCAGAATACGCAAGCCGGGGATCAACCCGATCCCCTCTGTGTGCTGTCGATCCTACTGCCGCAAC
CCTCGTTCGATCTGATCTTAGACTGGG
Found at i:12042408 original size:158 final size:156
Alignment explanation
Indices: 12041865--12042445 Score: 427
Period size: 158 Copynumber: 3.7 Consensus size: 156
12041855 TTAGACATGC
* * * *
12041865 AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGAGCGCTCAACCGGTCGGAGAG
1 AATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGCATGCGAGCGCTCAGCC-GCCGGAGAG
* * * * * *
12041930 GCAGAATGA-GCAAGCCGGGGATCAACCCGGTCCCCTCTGCGTGCTGTCGATCTTGCTACCGTAA
65 GCAGAAT-ACGCAAGCCGGGGATCAACCCGATCCCCTCTGTGTGCTGTCGATCCTACTGCCGCAA
* * **
12041994 CCCTCGGTCCAGTCCAATCTTAGACTGGG
129 CCCTCGTTCGA-TCTGATCTTAGACTGGG
* * * * *** * * *
12042023 AATGAAC-CTCATATGCATAAGTCAACCCACGAAAATGAGCGTACGAATACTGAGCCAACCGAAG
1 AATGAACTC-CATATGCCTAAGCCAACCCAC-AAAATGAGCATGCGAGCGCTCAGCC-GCCGGAG
* * ** * ** * * * *
12042087 AGGCATAATGCGCTGGTCGGGGATCGGCCCGGTTCCCCTCTGTGTGCTG-CCAGTCCCACTGCCA
63 AGGCAGAATACGCAAGCCGGGGATCAACCC-GATCCCCTCTGTGTGCTGTCGA-TCCTACTGCCG
* * * **
12042151 CAACCATCGGTCCG-GCTGGGGCTTAGACAT-GG
126 CAACCCTC-GTTCGATCT-GATCTTAGAC-TGGG
* * * * * *
12042183 AATGAACTCCCTATGCCAAAGCCAACCCACCAAATGGGCATGCGGGCGCTCAGCCGATCGGAGAG
1 AATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGCATGCGAGCGCTCAGCCG-CCGGAGAG
* * *
12042248 GCAGAATACGCAAGCCGAGGATCAACCCGATCCCCCCTGTGTGCTGTCGATCCTACTGTCGCAAC
65 GCAGAATACGCAAGCCGGGGATCAACCCGATCCCCTCTGTGTGCTGTCGATCCTACTGCCGCAAC
12042313 CCTCAGTTCGATCTGATCTTAGACTGGG
130 CCTC-GTTCGATCTGATCTTAGACTGGG
* ** ** * *
12042341 AATGAACTCCATATGCCTAAGTCAACCCACAAAACAAGTGTGCGGGTGCTCAGCCTGCCGGAGAG
1 AATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGCATGCGAGCGCTCAGCC-GCCGGAGAG
* * * * *
12042406 GCATAATGCGCAA-CTCGGCGATCAGCCCGGTCCCCCTCTG
65 GCAGAATACGCAAGC-CGGGGATCAACCCGAT-CCCCTCTG
12042446 CATGCTACCG
Statistics
Matches: 313, Mismatches: 94, Indels: 31
0.71 0.21 0.07
Matches are distributed among these distances:
157 3 0.01
158 145 0.46
159 100 0.32
160 61 0.19
161 4 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (156 bp):
AATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGCATGCGAGCGCTCAGCCGCCGGAGAGG
CAGAATACGCAAGCCGGGGATCAACCCGATCCCCTCTGTGTGCTGTCGATCCTACTGCCGCAACC
CTCGTTCGATCTGATCTTAGACTGGG
Found at i:12043244 original size:159 final size:155
Alignment explanation
Indices: 12042891--12043305 Score: 377
Period size: 159 Copynumber: 2.6 Consensus size: 155
12042881 AACTCTGTAT
* * * *
12042891 GCTTAGAGATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCACTCAG
1 GCTTAGA-ATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCACTCAG
* * *
12042956 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGACCCCCTGCATGCTGTCGATCCTG
65 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGACCCCCTGCATGCTGCCGATCCCG
* * *
12043021 CTGCCGCAACCCTGGGTCTGATCTGA
130 CTGCCACAACCCTGGGTCTCAACTGA
* * * * * * * *
12043047 TCTTAGATTGGGAATGAACT-CTGTTTGCCGAGGTCAACCCACGAAATGAGCGTACAGGCATTGA
1 GCTTAGAAT-GGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCACTCA
* ** * * * * * *
12043111 GTCGGTCGAAGAGGCATAATGTGTAAGCCGGGGATCAGCTCGGTCCCCCTCTGCGTGCTGCC-AG
64 GCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGC-CCG-ACCCC-CTGCATGCTGCCGA-
* *
12043175 TCCCGCTGCCACAACCCTTGGTC-CAACTGGG
125 TCCCGCTGCCACAACCCTGGGTCTCAACT-GA
* * * * * ** *
12043206 GCTTAGACATAGAATGAACTCCTTATGCCTAAGCCAACCCACAAAATGGGCGTGCTGGTGCTTAG
1 GCTTAGA-ATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCACTCAG
* *
12043271 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATC
65 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATC
12043306 GGTTCGGTCC
Statistics
Matches: 198, Mismatches: 52, Indels: 15
0.75 0.20 0.06
Matches are distributed among these distances:
155 2 0.01
156 80 0.40
157 2 0.01
158 8 0.04
159 103 0.52
160 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.19
Consensus pattern (155 bp):
GCTTAGAATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCACTCAGC
CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGACCCCCTGCATGCTGCCGATCCCGC
TGCCACAACCCTGGGTCTCAACTGA
Found at i:12043766 original size:159 final size:157
Alignment explanation
Indices: 12043409--12043823 Score: 408
Period size: 159 Copynumber: 2.6 Consensus size: 157
12043399 TATGCTCAGG
** * *
12043409 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGTGC-GGGCGCTCAACC
1 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCG-GCACCGAGC-CAGCC
* * * *
12043473 GACTGATGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTACTTGCTGTCGATCCTG
64 G---GA-GAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTACTTGCTGTCGATCCCG
* * * * * * * *
12043538 TTGCCGCAATCCTTGGTCTGGTTTGATCTTAGA
125 CTGCCACAACCCTCGGTCCGGCTGGAGCTTAGA
* **
12043571 C-TGGGAATGAACTCCGTATGCCTAAGTCAATGCACGAAATGAGCGTGCAGGCACCGAGCCAGCC
1 CAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGC-GGCACCGAGCCAGCC
* * *
12043635 GGAGAGGCATAATGCACAAGTCGGGGATCGACCCGGTCCCCCTCTGCGTT-CTGTC-AGTCCCGC
64 GGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCC-CTAC-TTGCTGTCGA-TCCCGC
*
12043698 TGCCACAACCCTCGGTCCGGCTGGGGCTTAGA
126 TGCCACAACCCTCGGTCCGGCTGGAGCTTAGA
** * * * *
12043730 CATGGAATGAACTCCAAATGCCTAAGCCAACCCACGAAACGAGCATGCGGTCACTC-AACCGGCC
1 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGG-CAC-CGAGCCAGCC
*
12043794 GAAGAGGCAGAATGCGCAAGTCGGGGATCG
64 GGAGAGGCAGAATGCGCAAGTCGGGGATCG
12043824 GTCGGATCCC
Statistics
Matches: 209, Mismatches: 35, Indels: 21
0.79 0.13 0.08
Matches are distributed among these distances:
158 37 0.18
159 113 0.54
160 4 0.02
161 1 0.00
162 50 0.24
163 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGCACCGAGCCAGCCGG
AGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTACTTGCTGTCGATCCCGCTGCCA
CAACCCTCGGTCCGGCTGGAGCTTAGA
Found at i:12043853 original size:517 final size:508
Alignment explanation
Indices: 12042610--12043853 Score: 1536
Period size: 517 Copynumber: 2.4 Consensus size: 508
12042600 GAGGCCAGTT
* * * *
12042610 GGAGAGGCATAATGCGTAAGCCGGGGATCAGCTCAGTCCCTCTCTACATGCTGTC-GATCCCGCT
1 GGAGAGGCATAATGCGTAAGCCGGGGATCAGCTCGGTCCCCCTCTGCGTGCTGTCAG-TCCCGCT
* * *
12042674 GCCACAACCCTCAGTCCGATGAGGG-TTAGACATGGAATGAACT-CGTATGCCTAAGCCAACCCA
65 GCCACAACCCTCGGTCCGCTG-GGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCA
* * * * * **
12042737 CGAAATGAGCCA-GCGGACGCTTAGCCAACCGAATAGG-TGAATGCACAAGCCGGGGATCAGCCC
129 CGAAATGAG-CATGCGGTCGCTTAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATC-GGTC
* * * * * *
12042800 GGTCCCCCTTGCGTGCTACCGATCCTGCTGCTGGTCCTGTTGCTACAACCCTCGGTCCAGTTTGA
192 GGTCCCCCTT-CGTGCTACCGATCCTACTACTGGTCCTGCTGCCACAACCCTCGGTCCAATCTGA
*
12042865 TCTTAGACTGGGAATGAACTCTGTATGCTTAGAGATGGAATGAACTCCGTATGCCTAAGCCAACC
256 TCTTAGACTGGGAATGAACTCTGTATGCTCAGAGATGGAATGAACTCCGTATGCCTAAGCCAACC
* *
12042930 CACGAAATGAGTGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCC
321 CACGAAATGAGTGTGCGGGCACTCAACCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCC
* *
12042995 CGACCCCCTGCATGCTGTCGATCCTGCTGCCGCAACCCTGGGTCTGATCTGATCTTAGATTGGGA
386 CGACCCCCTACATGCTGTCGATCCTGCTGCCGCAACCCTGGGTCTGATCTGATCTTAGACTGGGA
* * * ** * * *
12043060 ATGAACTCTGTTTGCCGAGGTCAACCCACGAAATGAGCGTACAGGCATTGAGTCGGTC
451 ATGAACTCCGTATGCCGAAGTCAACCCACGAAATGAGCGTACAGGCACCGAGCCAGCC
* * *
12043118 GAAGAGGCATAATGTGTAAGCCGGGGATCAGCTCGGTCCCCCTCTGCGTGCTGCCAGTCCCGCTG
1 GGAGAGGCATAATGCGTAAGCCGGGGATCAGCTCGGTCCCCCTCTGCGTGCTGTCAGTCCCGCTG
* * * *
12043183 CCACAACCCTTGGTCCAACTGGGGCTTAGACATAGAATGAACTCCTTATGCCTAAGCCAACCCAC
66 CCACAACCCTCGGTCC-GCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAC
* * * * *
12043248 AAAATGGGCGTGCTGGT-GCTTAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGTTCG
130 GAAATGAGCATGC-GGTCGCTTAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGG-TCG
* ** * *
12043312 GTCCCCCTTACATGCTGTCGATCCTACTACTGGTCCTGCTGCCGCAACCCTCGTTCCAATCCT-A
193 GTCCCCCTT-CGTGCTACCGATCCTACTACTGGTCCTGCTGCCACAACCCTCGGTCCAAT-CTGA
12043376 TCTTAGACTGGGAATGAACTCTGTATGCTCAG-GCATGGAATGAACTCCGTATGCCTAAGCCAAC
256 TCTTAGACTGGGAATGAACTCTGTATGCTCAGAG-ATGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
12043440 CCACGAAATGAGCGTGCGTGCGGGCGCTCAACCGACTGATGAGGCAGAATGCGCAAGCCAGGGAT
320 CCACGAAATGA--GT--GTGCGGGCACTCAACCGACCGAAGAGGCAGAATGCGCAAGCCAGGGAT
* * * * * * *
12043505 CGGCCCGGTCCCCCCTACTTGCTGTCGATCCTGTTGCCGCAATCCTTGGTCTGGTTTGATCTTAG
381 CGGCCC-G-ACCCCCTACATGCTGTCGATCCTGCTGCCGCAACCCTGGGTCTGATCTGATCTTAG
* ** *
12043570 ACTGGGAATGAACTCCGTATGCCTAAGTCAATGCACGAAATGAGCGTGCAGGCACCGAGCCAGCC
444 ACTGGGAATGAACTCCGTATGCCGAAGTCAACCCACGAAATGAGCGTACAGGCACCGAGCCAGCC
** * * *
12043635 GGAGAGGCATAATGCACAAGTCGGGGATC-GACCCGGTCCCCCTCTGCGTTCTGTCAGTCCCGCT
1 GGAGAGGCATAATGCGTAAGCCGGGGATCAG-CTCGGTCCCCCTCTGCGTGCTGTCAGTCCCGCT
*
12043699 GCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCAAATGCCTAAGCCAACCCA
65 GCCACAACCCTCGGTCC-GCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCA
* * * * * *
12043764 CGAAACGAGCATGCGGTCACTCAACCGGCCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGTCGG
129 CGAAATGAGCATGCGGTCGCTTAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGTCGG
12043829 ATCCCCCCATT-GTGCTACCGATCCT
194 -T-CCCCC-TTCGTGCTACCGATCCT
12043854 GCTGTCGTAA
Statistics
Matches: 623, Mismatches: 92, Indels: 33
0.83 0.12 0.04
Matches are distributed among these distances:
508 73 0.12
509 21 0.03
510 46 0.07
511 144 0.23
512 1 0.00
513 2 0.00
515 49 0.08
516 9 0.01
517 271 0.43
518 5 0.01
519 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (508 bp):
GGAGAGGCATAATGCGTAAGCCGGGGATCAGCTCGGTCCCCCTCTGCGTGCTGTCAGTCCCGCTG
CCACAACCCTCGGTCCGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACG
AAATGAGCATGCGGTCGCTTAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGTCGGTC
CCCCTTCGTGCTACCGATCCTACTACTGGTCCTGCTGCCACAACCCTCGGTCCAATCTGATCTTA
GACTGGGAATGAACTCTGTATGCTCAGAGATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
AATGAGTGTGCGGGCACTCAACCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGACC
CCCTACATGCTGTCGATCCTGCTGCCGCAACCCTGGGTCTGATCTGATCTTAGACTGGGAATGAA
CTCCGTATGCCGAAGTCAACCCACGAAATGAGCGTACAGGCACCGAGCCAGCC
Found at i:12044928 original size:26 final size:26
Alignment explanation
Indices: 12044899--12044951 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12044889 CCGGTCTGAT
* *
12044899 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12044925 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
12044951 C
1 C
12044952 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12045740 original size:26 final size:25
Alignment explanation
Indices: 12045705--12045754 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
12045695 CTCAAACTGC
* *
12045705 TAGACTGGAATGAACTCCGTATGCT
1 TAGACTGGAATAAACTCAGTATGCT
12045730 TAGACATGGAATAAACTCAGTATGC
1 TAGAC-TGGAATAAACTCAGTATGC
12045755 CTAAGCCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (25 bp):
TAGACTGGAATAAACTCAGTATGCT
Found at i:12046109 original size:26 final size:26
Alignment explanation
Indices: 12046080--12046132 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12046070 CCGGTCCAAT
12046080 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
12046106 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12046132 C
1 C
12046133 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12046329 original size:26 final size:26
Alignment explanation
Indices: 12046289--12046341 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12046279 CCAGTCTGAT
12046289 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
12046315 CTTAGACATGG-AATGAACTCTGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
12046341 C
1 C
12046342 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:12046831 original size:26 final size:26
Alignment explanation
Indices: 12046791--12046841 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12046781 TGATCTGATT
*
12046791 TTAGACTAGGAATGAACTTCGTATGG
1 TTAGACTAGGAATGAACTCCGTATGG
* *
12046817 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTAGGAATGAACTCCGTATG
12046842 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGG
Found at i:12047809 original size:26 final size:26
Alignment explanation
Indices: 12047773--12047825 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12047763 CCGGTCTGAT
*
12047773 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12047799 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12047825 C
1 C
12047826 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12048399 original size:159 final size:159
Alignment explanation
Indices: 12048010--12048507 Score: 427
Period size: 159 Copynumber: 3.1 Consensus size: 159
12048000 TCCGTATGCC
* * * *
12048010 TAGACATGGAATGAACTCCGTATGCCTGAGCCAACCCACGAAATGAGCATGCAGGTGCTCAGTCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGAGCTCAGTCG
* *** * *
12048075 ATCGGAGAGGCAGAATGCGCAAG-TCAGGGACCAGCCCGGTCCCTCCCTACGTGCTGTCGATCAT
66 ATCGGAGAGGCAGAATGCGCAAGCTGA-GGATTGGCCCGGTCCCTCCCTACGTACTATCGATCAT
*
12048139 ACTACCACAACCCTCGGTCTGGTCTGATCT
130 ACTACCACAACCCTCGGTCTGGTCTGAGCT
* * * * * * *
12048169 TAGAC-TGGGACTGAACTCCGTATGCCTAAGTCAACCTATGAAACGAGCGTTCGGGAGCTGAG-C
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGAGCTCAGTC
* * * * * * *
12048232 TGACCGGAGAGGCATAATGCGTAAGCTGAGGATTGGCTCGGTCCCTCTCTGCGTACTATCGGTC-
65 -GATCGGAGAGGCAGAATGCGCAAGCTGAGGATTGGCCCGGTCCCTCCCTACGTACTATCGATCA
* * *
12048296 TCGCTGCCACAACCCTCGGGTC-GG-CTGGGGCT
129 T-ACTACCACAACCCTC-GGTCTGGTCT-GAGCT
* * * * *
12048328 TAGACATGGAATCAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGTTCAGTCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGAGCTCAGTCG
* * * * * * * ** * *
12048393 GTCGGAGAGGCAGAATGCACAAGCCGAGGATTGGCCCGAT-CCTCCATGCATGTTACCGATCCTA
66 ATCGGAGAGGCAGAATGCGCAAGCTGAGGATTGGCCCGGTCCCTCCCTACGTACTATCGATCATA
* * * * * *
12048457 CTACCGCAACCCTTGGTCCGATCCGATCT
131 CTACCACAACCCTCGGTCTGGTCTGAGCT
12048486 TAGAC-TGGGAATGAACTCCGTA
1 TAGACAT-GGAATGAACTCCGTA
12048508 CGCTTAGACT
Statistics
Matches: 262, Mismatches: 65, Indels: 25
0.74 0.18 0.07
Matches are distributed among these distances:
157 5 0.02
158 52 0.20
159 197 0.75
160 8 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGAGCTCAGTCG
ATCGGAGAGGCAGAATGCGCAAGCTGAGGATTGGCCCGGTCCCTCCCTACGTACTATCGATCATA
CTACCACAACCCTCGGTCTGGTCTGAGCT
Found at i:12048513 original size:26 final size:26
Alignment explanation
Indices: 12048484--12048533 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
12048474 CCGATCCGAT
12048484 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
*
12048510 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
12048534 TGCCTAAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:12048903 original size:26 final size:26
Alignment explanation
Indices: 12048852--12048904 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12048842 CTGATCTGAT
*
12048852 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12048878 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
12048904 C
1 C
12048905 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12050111 original size:26 final size:26
Alignment explanation
Indices: 12050073--12050125 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12050063 GGCTCAAAAT
*
12050073 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12050099 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
12050125 C
1 C
12050126 CTAAGCCGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12050479 original size:26 final size:26
Alignment explanation
Indices: 12050441--12050493 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12050431 CCGATCCGAT
12050441 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12050467 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
12050493 C
1 C
12050494 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12050859 original size:156 final size:156
Alignment explanation
Indices: 12050466--12050901 Score: 407
Period size: 159 Copynumber: 2.8 Consensus size: 156
12050456 AACTCCATAT
* *
12050466 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAA-GAACCCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * * *
12050530 ACCAGTCAGAGAGGTAGAATGTGCAAGCCGGGGACTGGCCTGATCCCCCCGTGCATGCTATCGAT
64 GCCGGCCAGAGAGGCAGAATGCGCAAG-CGGGGATTGGCCCGATCCCCCC-TGCGTGCAACCGAT
* *
12050595 CCTACTACCATAACCCTCGATCCGATCTGA
127 CCCACTACCACAACCCTCGATCCGATCTGA
* * * * * * *
12050625 TCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCACTAAG
1 GCTTAGACTGGGAA-GAACCCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
12050690 CCGACC-GAAGAGGCATAATGCGCAAGTCGGGGATTGGCCCGATCCCCCTCTACGTGCAACCGGT
65 CCGGCCAG-AGAGGCAGAATGCGCAAG-CGGGGATTGGCCCGATCCCCC-CTGCGTGCAACCGAT
* * *
12050754 CCCGCTGCCACAACCCTCGATCCGAT-TAGG
127 CCCACTACCACAACCCTCGATCCGATCT-GA
* * * *
12050784 GCTTATAC-GTGG-A-AACCCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGTTCAG
1 GCTTAGACTG-GGAAGAACCCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
12050846 CCGGCCAGAGAGGCAGAATACGTAAGCTGGGGATCGACCCGATCCCCCCTGCGTGC
65 CCGGCCAGAGAGGCAGAATGCGCAAGC-GGGGATTGGCCCGATCCCCCCTGCGTGC
12050902 TGTCGGAACG
Statistics
Matches: 227, Mismatches: 43, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
155 8 0.04
156 79 0.35
157 1 0.00
158 5 0.02
159 133 0.59
160 1 0.00
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (156 bp):
GCTTAGACTGGGAAGAACCCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGAGGCAGAATGCGCAAGCGGGGATTGGCCCGATCCCCCCTGCGTGCAACCGATCCCA
CTACCACAACCCTCGATCCGATCTGA
Found at i:12051665 original size:26 final size:26
Alignment explanation
Indices: 12051636--12051695 Score: 120
Period size: 26 Copynumber: 2.3 Consensus size: 26
12051626 AGCATGTGTG
12051636 CCGTATGCTTAGACATGGAATGAACT
1 CCGTATGCTTAGACATGGAATGAACT
12051662 CCGTATGCTTAGACATGGAATGAACT
1 CCGTATGCTTAGACATGGAATGAACT
12051688 CCGTATGC
1 CCGTATGC
12051696 CTAAGCCAAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (26 bp):
CCGTATGCTTAGACATGGAATGAACT
Found at i:12053292 original size:26 final size:26
Alignment explanation
Indices: 12053263--12053315 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12053253 CCGGTCTGAT
12053263 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12053289 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12053315 C
1 C
12053316 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12054417 original size:26 final size:26
Alignment explanation
Indices: 12054388--12054440 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12054378 CCGGTCTGAT
12054388 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12054414 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12054440 C
1 C
12054441 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12055547 original size:160 final size:159
Alignment explanation
Indices: 12055136--12055553 Score: 437
Period size: 159 Copynumber: 2.6 Consensus size: 159
12055126 AACTCCGTAT
*
12055136 GCTTAGACATGGATTGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * ** * *
12055201 CCAGCCGGAGAGGCAGAATGCACAAGTCGGGGATTGGCTCGATCCCCCTCTACGTGCTATTGATC
66 CCAGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTACTGATC
** **** * *
12055266 TTGCTATTGTAACTCTCAGTTCGGTCTGA
131 CCGCTACCACAACCCTCAGTTCGGACTGA
* * * * * * *
12055295 TCTTAGAC-TAGGAATAAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * ** *
12055359 GCCAGTCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCTCTCTGTGTGCTACTGGT
65 GCCAGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTACTGAT
* * *
12055424 CCCGCTGCCACAACCCTCAGTTTGGACTAGG
130 CCCGCTACCACAACCCTCAGTTCGGACT-GA
* * *
12055455 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACTG-GCGTGCGGGTACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GAGCGTGCGGGTGCTCA
* * *
12055519 GCC-GATCAAAGAGGCAGAATGTGCAAGCCAGGGAT
65 GCCAG-TCGAAGAGGCAGAATGCGCAAGCCGGGGAT
12055554 TGGCCTTGTC
Statistics
Matches: 208, Mismatches: 46, Indels: 9
0.79 0.17 0.03
Matches are distributed among these distances:
158 1 0.00
159 125 0.60
160 80 0.38
161 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCAGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTACTGATC
CCGCTACCACAACCCTCAGTTCGGACTGA
Found at i:12055643 original size:26 final size:26
Alignment explanation
Indices: 12055614--12055666 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12055604 CTAGTCCGAT
12055614 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
12055640 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
12055666 C
1 C
12055667 ATAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:12056437 original size:159 final size:158
Alignment explanation
Indices: 12056006--12056502 Score: 386
Period size: 159 Copynumber: 3.1 Consensus size: 158
12055996 CTTAGAAATT
* * * * ** * **
12056006 GAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGTGCGGGTGCTCAGCCGACTA
1 GAATGAACTCCCTATGCCTAAGCCAA-CC-CAAGA-AA-CGAGCGTACGGGCACTAAGCCGACCG
* * * * * * *
12056071 GAGAGGCTGAATGCGCAAGCCAGGGA-CTAGCCCGTTCCCCCTTGGGTGCTATGGATCCTGCTGC
62 GAGAGGCAGAATGCGCAAGCCGGGGATC-GGCCCGATCCCCCTTGCGTGCTATCGATCCTGCTAC
* * * *
12056135 CGCAACCCTCGGTCCGGTCCGATCTTAGATTGG
126 CACAACCCTCAGTCCGGTCCGAGCTTAGAATGG
* * * * * **
12056168 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTAAGCCGGTCGGAGA
1 GAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGCACTAAGCCGACCGGAGA
* * * ** * *
12056233 GGCAGAATACACAAGCCGAGGATCGGTTCGATCCCCCTCTACGTGCCATCGATCCTGCTACCACA
66 GGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCT-TGCGTGCTATCGATCCTGCTACCACA
** *
12056298 ACCCTCAGTCCGGTTGGGGCTTAGACAT-G
130 ACCCTCAGTCCGGTCCGAGCTTAGA-ATGG
* * * * * *
12056327 GAATGAACTCCCTGTGCCTAAGCCAACCCAAGAAATGGGTGTACGGGCACTCAGTCGACCGGAGA
1 GAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGCACTAAGCCGACCGGAGA
* * * ** ** **
12056392 GGCAGAATGCGCATGCCGGGGATCGGCCCCGATCCCTCTTGCGTGCTACCGATCCAACTGTCGTA
66 GGCAGAATGCGCAAGCCGGGGATCGG-CCCGATCCCCCTTGCGTGCTATCGATCCTGCTACCACA
* * * *
12056457 ACCCTCAGTCCGGTCTGATCTGAGACTGG
130 ACCCTCAGTCCGGTCCGAGCTTAGAATGG
* *
12056486 GAATGAAATCCATATGC
1 GAATGAACTCCCTATGC
12056503 TTAGACTGGG
Statistics
Matches: 261, Mismatches: 69, Indels: 13
0.76 0.20 0.04
Matches are distributed among these distances:
158 51 0.20
159 170 0.65
160 13 0.05
161 2 0.01
162 25 0.10
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGCACTAAGCCGACCGGAGA
GGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTTGCGTGCTATCGATCCTGCTACCACAA
CCCTCAGTCCGGTCCGAGCTTAGAATGG
Found at i:12057252 original size:159 final size:157
Alignment explanation
Indices: 12057067--12057362 Score: 369
Period size: 159 Copynumber: 1.9 Consensus size: 157
12057057 TTAGATTGGG
* * * * **
12057067 AATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGTCGG-CGCTGAGTCGGTCGGGGA
1 AATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTG-CGGACGCTCAGTCGGCCGAAGA
* ** * * * * * * *
12057131 GACATAATGTGCAAGCCGGGGATCGGCTCGGTCCCTCTCTGCGTGCTGTCGGTCCCGTTGCCACA
65 GACAGAATGCACAAGCAGGGGATCGACCCGATCCC-C-CTGCGTGCTATCGATCCCGCTGCCACA
*
12057196 ATCCTCGGTCTGGCTGGGGCTTAGACATGA
128 ACCCTCGGTCTGGCTGGGGCTTAGACATGA
* *
12057226 AATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGACGCTCAGTCGGCCGAAGAG
1 AATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGACGCTCAGTCGGCCGAAGAG
* *
12057291 GCAGAATGCACAAGCAGGGGATCGACCCGATCCCCCTGCGTGCTATCGATCCTGCTGCCACAACC
66 ACAGAATGCACAAGCAGGGGATCGACCCGATCCCCCTGCGTGCTATCGATCCCGCTGCCACAACC
12057356 CTCGGTC
131 CTCGGTC
12057363 CGATCCGATC
Statistics
Matches: 115, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
157 32 0.28
158 4 0.03
159 79 0.69
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.19
Consensus pattern (157 bp):
AATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGACGCTCAGTCGGCCGAAGAG
ACAGAATGCACAAGCAGGGGATCGACCCGATCCCCCTGCGTGCTATCGATCCCGCTGCCACAACC
CTCGGTCTGGCTGGGGCTTAGACATGA
Found at i:12058130 original size:26 final size:26
Alignment explanation
Indices: 12058092--12058144 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12058082 GGCTCAAACT
12058092 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
12058118 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
12058144 C
1 C
12058145 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:12058473 original size:26 final size:26
Alignment explanation
Indices: 12058435--12058490 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
12058425 TCGGTCTGAT
12058435 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
12058461 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
12058487 CTTA
1 CTTA
12058491 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:12059073 original size:159 final size:158
Alignment explanation
Indices: 12058656--12059062 Score: 444
Period size: 159 Copynumber: 2.6 Consensus size: 158
12058646 AACTCCGTAT
*
12058656 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
12058721 CCGGCTGGAGAGGCAGAATGGGTAAGCTGGGGATCGGCCTGGTCACCCCCGACGTGCTGCCGATC
66 CCAGCCGGAGAGGCAGAATGCGCAAGC-GGGGATCGACCCGGTCACCCCCGACGTGCTGCCGATC
* * *
12058786 CTGCTACCACAGCCCTCGGTCCGGTCCAA
130 CCGCTACCACAACCCTCGGTCCGCTCCAA
* * * * * * * *
12058815 TCTTAGAC-TGGGAATGAACTCCGTATGGCTAGGTCAACCCACGGAACGAGCGTTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
12058879 GCCAGTCGGAGATGCATAATGTGCAAGCCGGGGATCGACCCGGTC-CCCCTCTG-CGTGCTGCCT
65 GCCAGCCGGAGAGGCAGAATGCGCAAG-CGGGGATCGACCCGGTCACCCC-C-GACGTGCTGCCG
***
12058942 ATCCCGCTACCACAACCCTCGGTCCGACT-GGG
127 ATCCCGCTACCACAACCCTCGGTCCG-CTCCAA
* * * *
12058974 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCATCCCACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
12059039 CCAACCGAAGAGGCAGAATGCGCA
66 CCAGCCGGAGAGGCAGAATGCGCA
12059063 GGTCGAGGAT
Statistics
Matches: 199, Mismatches: 43, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
158 5 0.03
159 190 0.95
160 4 0.02
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGCCGGAGAGGCAGAATGCGCAAGCGGGGATCGACCCGGTCACCCCCGACGTGCTGCCGATCC
CGCTACCACAACCCTCGGTCCGCTCCAA
Found at i:12059483 original size:456 final size:455
Alignment explanation
Indices: 12058628--12059961 Score: 1375
Period size: 456 Copynumber: 3.0 Consensus size: 455
12058618 CGTCTGAACC
* *
12058628 GATCTTAGATGGGAAAGGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 GATCTTAGATGGG-AATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
* * * * * * *
12058693 CCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCTGGAGAGGCAGAATGGGTAAGCTGGGGATCGG
65 CCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAAAGACAGAATGGGGAAGCCGGGGACCGG
* * * * *
12058758 CCTGGTCACCCCCGACGTGCTGCCGATCCTGCTACCACAGCCCTCGGTCCGGTCCAATCTTAGAC
130 CCTGGTCACCCCCGACGTGCTACCAATCCTACTACCACAACCCTCAGTCCGGTCCAATCTTAGAC
* * * *
12058823 TGGGAATGAACTCCGTATGGCTAGGTCAACCCACGGAACGAGCGTTCGGGCACTGAGCCAGTCGG
195 TGGGAATGAACTCCGTATGGCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTGAGCCAGGCAG
* * * * *
12058888 AGATGCATAATGTGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCTATCCCGCTACC
260 AGAGGCATAATGTGCAAGCCGGGGATCGACCCGGTCCCCCTCTGAGTACTACCTATCCCACTACC
*
12058953 ACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCATCCCACGA
325 ACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCATCCCACGA
* * * * * *
12059018 AATGGGCGTGCGGGCGCTCAGCCAACCGAAGAGGCAGAATGCGCAGGTCGAGGATCAGCCCGGTT
390 AACGGGCGTGCGGGCGCTCAGCCAACCGAAGAGGCAAAATACGCAAGCCGAGGATCAGCCCGGTC
12059083 T
455 T
* *
12059084 GATCTTAGATTGGGAATGAACTCCGGATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAG
1 GATCTTAGA-TGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
* * *
12059149 CCCATGAAATGAGCGTGCGGGTGCTCAGTCGACCGGAAAGACAGAATGCGGGAAGCCGGGGACCG
65 CCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAAAGACAGAATG-GGGAAGCCGGGGACCG
* * ** * * *
12059214 GCCTGGTC-CCCTCTG-CGTGCTATCAATCCTACTGTCGCAACCTTCAGTCCGGTCCGATCTTAG
129 GCCTGGTCACCC-CCGACGTGCTACCAATCCTACTACCACAACCCTCAGTCCGGTCCAATCTTAG
* * *
12059277 ACTGGGAATGAACTCCGTAT-GCTTAAGTCAACCCATGAAACGAGCGTTTGGGCACTGAGCTAGG
193 ACTGGGAATGAACTCCGTATGGC-TAAGTCAACCCACGAAACGAGCGTTCGGGCACTGAGCCAGG
* *
12059341 CAGAGAGGCATAATGTGCAAGTCGGGGATCGACCCGGTCCCCCTCTGAGTACTACCTGTCCCACT
257 CAGAGAGGCATAATGTGCAAGCCGGGGATCGACCCGGTCCCCCTCTGAGTACTACCTATCCCACT
* * * *
12059406 GCCACAACCCTCGGTCCGACTGGGGCTTGGACATGTAATGAACTCCCTATGCCAAAGCCATCTCA
322 ACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCATCCCA
* *** * * * * *
12059471 CGAACCGGGCGTGCGGGCGCTCAGCTGGCCGGAGAGGCAAAATACGTAAGCCGGGGATTAGCTCG
387 CGAAACGGGCGTGCGGGCGCTCAGCCAACCGAAGAGGCAAAATACGCAAGCCGAGGATCAGCCCG
12059536 GTCT
452 GTCT
*
12059540 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACT-TCGTATGCCTAAGCCA
1 GATCTTAGA-TGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCT-GTATGCCTAAGCCA
* * * * * * * * ** ** * * *
12059604 ACCCACGAAACAAGTGTGTGGGCGTTCAGCCGGCCAGAGAGGTAGAATACGCAAGTCGGGGACCA
64 ACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAAAGACAGAATGGGGAAGCCGGGGACCG
* * * * * * **
12059669 GCCTGGTC-CTCCC--C-TG----C-ATGCT-GT-------CTCTCGGTCCAGTCTGATCTTAGA
129 GCCTGGTCACCCCCGACGTGCTACCAATCCTACTACCACAACCCTCAGTCCGGTCCAATCTTAGA
* * * * * ** *
12059717 CTGGGAATGAACTCCGTATGCCTAAGTCAACGCACAAAATGAGCGTTCAGGTGCTGAGCC-GATC
194 CTGGGAATGAACTCCGTATGGCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTGAGCCAG-GC
* * * * * *
12059781 GGAGAGGCATAATGTGCAAGCCGGGGATCGGCCCGGTCCCACTCTGCA-TGCTGTCC-ATCCCGC
258 AGAGAGGCATAATGTGCAAGCCGGGGATCGACCCGGTCCCCCTCTG-AGTACT-ACCTATCCCAC
* * * ** * * * *
12059844 TGCCACAACCCTCGATCTGGTTGGGGCTTATACATGGAATGAACTCCCTATGCCTAAGCCAACAC
321 TACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCATCCC
* * ** * * * *
12059909 ATGAAACGGGCATGCGGATGCTCATCCAATCGGAGAGGCAAAATGCGCAAGCC
386 ACGAAACGGGCGTGCGGGCGCTCAGCCAACCGAAGAGGCAAAATACGCAAGCC
12059962 TGGGAACGAC
Statistics
Matches: 737, Mismatches: 132, Indels: 35
0.82 0.15 0.04
Matches are distributed among these distances:
438 1 0.00
439 214 0.29
440 4 0.01
446 1 0.00
447 4 0.01
448 1 0.00
452 2 0.00
453 1 0.00
454 1 0.00
455 25 0.03
456 456 0.62
457 27 0.04
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.19
Consensus pattern (455 bp):
GATCTTAGATGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
CCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAAAGACAGAATGGGGAAGCCGGGGACCGGC
CTGGTCACCCCCGACGTGCTACCAATCCTACTACCACAACCCTCAGTCCGGTCCAATCTTAGACT
GGGAATGAACTCCGTATGGCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTGAGCCAGGCAGA
GAGGCATAATGTGCAAGCCGGGGATCGACCCGGTCCCCCTCTGAGTACTACCTATCCCACTACCA
CAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCATCCCACGAA
ACGGGCGTGCGGGCGCTCAGCCAACCGAAGAGGCAAAATACGCAAGCCGAGGATCAGCCCGGTCT
Found at i:12059572 original size:26 final size:26
Alignment explanation
Indices: 12059543--12059595 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
12059533 TCGGTCTGAT
12059543 CTTAGAC-TGGGAATGAAC-TCTGTATG
1 CTTAGACAT-GGAATGAACTTC-GTATG
12059569 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
12059595 C
1 C
12059596 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:12060059 original size:26 final size:26
Alignment explanation
Indices: 12060030--12060080 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12060020 AGTCTGATCA
*
12060030 TAGACTGG-GAATGAACTCTGTATGCT
1 TAGACTGGAG-ATGAACTCCGTATGCT
12060056 TAGACTGGAGATGAACTCCGTATGC
1 TAGACTGGAGATGAACTCCGTATGC
12060081 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGAGATGAACTCCGTATGCT
Found at i:12061318 original size:26 final size:26
Alignment explanation
Indices: 12061289--12061341 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12061279 CTGGTCTGAT
*
12061289 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
12061315 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12061341 C
1 C
12061342 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12061497 original size:355 final size:359
Alignment explanation
Indices: 12060775--12061595 Score: 901
Period size: 355 Copynumber: 2.3 Consensus size: 359
12060765 ACTCCAAATG
* * * * *
12060775 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGAGGGCGCTAAGC
** * * * *
12060840 C-GATCGGAGAGGCAGAATGTGCAAGTCGGGGATCAGCTCGGTCCCCCTCTGCGTGC--T-G--C
66 CAG-TCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCTCT-TGCGTGCTATCGATC
* * *
12060899 C-G-T-----AACCCTTGGTCCGATAC-GATCTTAGACTAGGAATGAACTCCATATGCTTGACTG
129 CTGCTACCGCAACCCTCGGTCTGGT-CTGATCTTAGACTAGGAATGAACTCCATATGCTTGACTG
* *
12060956 GGGATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCTGGAG
193 GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACC-GC--G-G
12061021 AGGCCGATCGGAGAGGCATAATGCACAAGCCAAGGATCAGCCAGATCCCCCTCTGCATGCTGCCG
254 A-G-C-A-CGGAGAGGCATAATGCACAAGCCAAGGATCAGCCAGATCCCCCTCTGCATGCTGCCG
* ** *
12061086 ATCCCGCTGCTGGTCCTGCTGCCACAACCCTCGATCCGACTGGGG
315 ATCCCACTGCCAGTCCTGCTGCCACAACCCTCGATCCGACTGGGC
* * ** * * **
12061131 CTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAATCCGCAAAACGGGTGTGCGGGCGCTCTG
1 CTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCACAAAACAAGCGTGAGGGCGCTAAG
* * *
12061195 CCAGTCTGAGAGGCAGAATGCGCAAGCCAGGGATCTGCCCGGTCCCTCTTGCGTGCTATCGATCC
65 CCAGTCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCTCTTGCGTGCTATCGATCC
**
12061260 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGG
130 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCTT-GACTGG
* *
12061325 GGATGAACTCCGTATGCCTAAGTCAACCCAGGAAATGAGCGTGCGGGCACTCAA-C-C-GA-C-C
194 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACCGCGGAGCAC
** * * * * *
12061385 GGAGAGGCATAATGTGCAAGTCGAGGATCAGCCTAG-TCCCTCTCTGCGTGCTGTCGATCCCACT
259 GGAGAGGCATAATGCACAAGCCAAGGATCAGCC-AGATCCCCCTCTGCATGCTGCCGATCCCACT
* * * *
12061449 GCCAGTCTTGCTGCCACAACCCTTGGTCCGGCTGGGC
323 GCCAGTCCTGCTGCCACAACCCTCGATCCGACTGGGC
* * *
12061486 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATAAGCGTGAGGGTGCTAAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGAGGGCGCTAAGC
* * *
12061551 CGGTCGGAGAGGCATAATGCACAAGCCGGGGATCAGCCCGGTCCC
66 CAGTCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCC
12061596 CCTCTGTGTA
Statistics
Matches: 392, Mismatches: 55, Indels: 37
0.81 0.11 0.08
Matches are distributed among these distances:
354 1 0.00
355 182 0.46
356 97 0.25
357 3 0.01
358 2 0.01
360 2 0.01
361 3 0.01
362 1 0.00
365 1 0.00
366 1 0.00
367 43 0.11
368 56 0.14
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (359 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGAGGGCGCTAAGC
CAGTCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCTCTTGCGTGCTATCGATCCT
GCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTGACTGGGG
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACCGCGGAGCACGG
AGAGGCATAATGCACAAGCCAAGGATCAGCCAGATCCCCCTCTGCATGCTGCCGATCCCACTGCC
AGTCCTGCTGCCACAACCCTCGATCCGACTGGGC
Found at i:12061735 original size:158 final size:159
Alignment explanation
Indices: 12061446--12061742 Score: 400
Period size: 158 Copynumber: 1.9 Consensus size: 159
12061436 TGTCGATCCC
* * *
12061446 ACTGCCAGTCTTGCTGCCACAACCCTTGGTCCGGCTGGGCCTTAGACATGGAATGAACTCCGTAT
1 ACTGCCAGTCCTACTGCCACAACCCTCGGTCCGGCTGGGCCTTAGACATGGAATGAACTCCGTAT
* ** * *
12061511 GCCTAAGTCAACCCACAAAATAAGCGTGAGGGTGCTAAGCCGGTCGGAGAGGCATAATGCACAAG
66 GCCCAAACCAACCCACAAAATAAGCGTGAGGGTGCTAAGCCGATCGGAGAGGCAGAATGCACAAG
*
12061576 CCGGGGATCAGCCCGGTCCCCCTCTGTGT
131 CCAGGGATCAGCCCGGTCCCCCTCTGTGT
* * * *
12061605 ACTGCCAGTCCTACTGCCACAACCCTCGGTCTGGCTGGG-GTTAGACATGGAATGAACTCCTTGT
1 ACTGCCAGTCCTACTGCCACAACCCTCGGTCCGGCTGGGCCTTAGACATGGAATGAACTCCGTAT
* ** * * *
12061669 GCCCAAACCAACCCACGAAATGGGCGTGCGGGTGCTCAA-CCGATCGGGGAGGTAGAATGCACAA
66 GCCCAAACCAACCCACAAAATAAGCGTGAGGGTGCT-AAGCCGATCGGAGAGGCAGAATGCACAA
12061733 GCCAGGGATC
130 GCCAGGGATC
12061743 GATCGAGTCC
Statistics
Matches: 118, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
158 81 0.69
159 37 0.31
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
ACTGCCAGTCCTACTGCCACAACCCTCGGTCCGGCTGGGCCTTAGACATGGAATGAACTCCGTAT
GCCCAAACCAACCCACAAAATAAGCGTGAGGGTGCTAAGCCGATCGGAGAGGCAGAATGCACAAG
CCAGGGATCAGCCCGGTCCCCCTCTGTGT
Found at i:12061843 original size:26 final size:26
Alignment explanation
Indices: 12061803--12061854 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12061793 CTGTCTAATT
12061803 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
* *
12061829 TTAGACTGGGGATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
12061855 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:12062851 original size:159 final size:157
Alignment explanation
Indices: 12062688--12062989 Score: 326
Period size: 159 Copynumber: 1.9 Consensus size: 157
12062678 CTTACTGTTG
* ** * *
12062688 CAACCCTCAGTCCAGTCT-GATCTTAGAC-TAGGAATGAACTCTGTATGCATAAGTCAACCCACG
1 CAACCATCAGTCCAGT-TGGAT-TTAGACAT-GGAATGAACTCCCTATCCATAAGCCAACCCACG
* * * *
12062751 AAATGAGCGTACGGGCACTGAGCC-GAC-CGAAGAGGCATAATGCGCAAGCC-GAGGATCGACTC
63 AAATGAGCATACGGGCACTCAGCCAG-CTAGAA-AGGCAAAATGCGCAAGCCAG-GGATCGACTC
*
12062813 GGTCCCCCTCTGCGTGCTGCCGATCCCGCTGCCA
125 AGTCCCCC-CTGCGTGCTGCCGATCCCGCTGCCA
** ** * *
12062847 CAACCATTGGTCTGGTTGGGGTTTAGACATGGAATGAACTCCCTATCCCTAAGCCAACCCACGAA
1 CAACCATCAGTCCAGTT-GGATTTAGACATGGAATGAACTCCCTATCCATAAGCCAACCCACGAA
* * *
12062912 ATGGGCATGCGGGCGCTCAGCCAGCTAGAAAGGCAAAATGCGCAAGCCAGGGATCGACTCAGTCC
65 ATGAGCATACGGGCACTCAGCCAGCTAGAAAGGCAAAATGCGCAAGCCAGGGATCGACTCAGTCC
12062977 CCCCTGCGTGCTG
130 CCCCTGCGTGCTG
12062990 TTGATCCTGC
Statistics
Matches: 118, Mismatches: 19, Indels: 13
0.79 0.13 0.09
Matches are distributed among these distances:
158 11 0.09
159 99 0.84
160 8 0.07
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.18
Consensus pattern (157 bp):
CAACCATCAGTCCAGTTGGATTTAGACATGGAATGAACTCCCTATCCATAAGCCAACCCACGAAA
TGAGCATACGGGCACTCAGCCAGCTAGAAAGGCAAAATGCGCAAGCCAGGGATCGACTCAGTCCC
CCCTGCGTGCTGCCGATCCCGCTGCCA
Found at i:12063065 original size:26 final size:26
Alignment explanation
Indices: 12063025--12063076 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12063015 CTGATCTGAT
12063025 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
* *
12063051 TTAGATTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
12063077 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:12063533 original size:184 final size:184
Alignment explanation
Indices: 12063219--12063575 Score: 480
Period size: 184 Copynumber: 1.9 Consensus size: 184
12063209 TCTGGTTGGG
* *
12063219 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACCAGCGTACGGGCCCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACCAGCGTACGGGCCCTCAA
* * ** * * *
12063284 TCGGTCGGAGAGGCAGAATGTGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGGGCTACCGATCC
66 CCGGTCGAAGAGGCAGAATGCACAAGCCGAGGACCGGCCCGATCCCCCATGCAGGCTACCGATCC
*
12063349 TGCTACTGCAACCCTCAATCCGATCTGATCCTAGACTGGGAATGAACTCTGTAT
131 TGCTACTGCAACCCTCAATCCGATCCGATCCTAGACTGGGAATGAACTCTGTAT
* * **
12063403 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACCAGCGTACGGGCCCTCAA
* * * * * * **
12063468 CCGGTCGAAGAGGTAGAATGCACAAGCCGGGGACCGGCTCGATCCCCTATGCATGTTGTCGATCC
66 CCGGTCGAAGAGGCAGAATGCACAAGCCGAGGACCGGCCCGATCCCCCATGCAGGCTACCGATCC
*** *
12063533 TGCTACTGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAAT
131 TGCTACTGCAACCCTCAATCCGATCCGATCCTAGACTGGGAAT
12063576 AAACCCCGTA
Statistics
Matches: 147, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
184 147 1.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACCAGCGTACGGGCCCTCAA
CCGGTCGAAGAGGCAGAATGCACAAGCCGAGGACCGGCCCGATCCCCCATGCAGGCTACCGATCC
TGCTACTGCAACCCTCAATCCGATCCGATCCTAGACTGGGAATGAACTCTGTAT
Found at i:12063906 original size:26 final size:26
Alignment explanation
Indices: 12063877--12063929 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12063867 CCGGTCTGAT
*
12063877 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGAG-ATGAACTCCATATG
12063903 CTTAGACTGGAGATGAACTCCATATG
1 CTTAGACTGGAGATGAACTCCATATG
12063929 C
1 C
12063930 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCATATG
Found at i:12064612 original size:26 final size:26
Alignment explanation
Indices: 12064574--12064626 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12064564 GGCTCAAACT
12064574 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12064600 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12064626 C
1 C
12064627 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12064981 original size:26 final size:26
Alignment explanation
Indices: 12064930--12064982 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12064920 CCGGTCCGAT
*
12064930 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
12064956 CTTAGAC-ATGGAATGAACTCTATATG
1 CTTAGACTA-GGAATGAACTCCATATG
12064982 C
1 C
12064983 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:12066173 original size:26 final size:26
Alignment explanation
Indices: 12066135--12066187 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12066125 GGCTCAAACT
12066135 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12066161 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12066187 C
1 C
12066188 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12066628 original size:184 final size:185
Alignment explanation
Indices: 12066319--12067069 Score: 667
Period size: 184 Copynumber: 4.0 Consensus size: 185
12066309 TCCGGCTGGG
** * * * *
12066319 GCTTAGACATGGAATGAACTCACTATGCCTAAGCCAACCCACGAAACGGGCATGCAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * * * * *
12066384 CCGGTCGGAGAGGTAGAATGTGCAAGTCGAGGATCGGCCCAGA-CTCCCCTATGTGCTGTCGATC
66 CCAGTCGGAGAGGCAGAATGTGCAAGCCGGGGATC-ACCCCGATCCCCCCTACGTGCTGTCGATC
12066448 CTACTGCCGCAACCCTCGATCCGGTCCGATCTTAGAATTG-GAATGAACTCCGTAT
130 CTACTGCCGCAACCCTCGATCCGGTCCGATCTTAGAATTGAGAATGAACTCCGTAT
* * * *
12066503 GCTTAGAC-TGGAGGTGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGA-ATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* * *
12066567 GTCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCACCCCGATCCCCCCTGCGTGCTGTCGATC
65 GCCAGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCACCCCGATCCCCCCTACGTGCTGTCGA--
*
12066632 CTACTGCTAGTCCTGCTACTGCAACCCTCGGTCCGGTCCGATCTTAGAA-TGAGAATGAACTCCG
128 -T-C--CTA---CTGC--C-GCAACCCTCGATCCGGTCCGATCTTAGAATTGAGAATGAACTCCG
*
12066696 TAG
183 TAT
* ***
12066699 GCTTAGACATGGAATAAACT-TCGTATGCCTAAGCCAACCCGTAAAACGAGCGTGCAGGCGCTCA
1 GCTTAGACATGGAATGAACTCT-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* * * * * * * *
12066763 GCCAGCCGGAGAGGTAGAATG-CCTAAACTGGGGACTGA-CCCGGTCCCCCCTACGTGCTATCGA
65 GCCAGTCGGAGAGGCAGAATGTGC-AAGCCGGGGA-TCACCCCGATCCCCCCTACGTGCTGTCGA
* * * * ** * * *
12066826 TCTTGCTACCACAACCCTCGGCCCGGTCTGATCTTAG-ACTGAGAATGAACTCCATAT
128 TCCTACTGCCGCAACCCTCGATCCGGTCCGATCTTAGAATTGAGAATGAACTCCGTAT
* * *
12066883 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAATCGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * *** * ** * **
12066948 CTAGTCGGAGAGGCAGAATGCGTAAGTTAGGGACCGGCCTGATCCCTCAATACGTGCTGTCGATC
66 CCAGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCACCCCGATCCC-CCCTACGTGCTGTCGATC
* ** ** * *
12067013 CTACTGTCGTGACCCTC-AGTCCGGTCTAATCTTAG-ACTGGGAATGAACTCCGTAT
130 CTACTGCCGCAACCCTCGA-TCCGGTCCGATCTTAGAATTGAGAATGAACTCCGTAT
12067068 GC
1 GC
12067070 CTAAGTCAAC
Statistics
Matches: 461, Mismatches: 81, Indels: 49
0.78 0.14 0.08
Matches are distributed among these distances:
183 10 0.02
184 224 0.49
185 61 0.13
187 4 0.01
188 1 0.00
190 4 0.01
192 1 0.00
193 5 0.01
195 5 0.01
196 140 0.30
197 6 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CCAGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCACCCCGATCCCCCCTACGTGCTGTCGATCC
TACTGCCGCAACCCTCGATCCGGTCCGATCTTAGAATTGAGAATGAACTCCGTAT
Found at i:12066703 original size:26 final size:26
Alignment explanation
Indices: 12066674--12066723 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
12066664 CCGGTCCGAT
*
12066674 CTTAGA-ATGAGAATGAACTCCGTAGG
1 CTTAGACATG-GAATAAACTCCGTAGG
*
12066700 CTTAGACATGGAATAAACTTCGTA
1 CTTAGACATGGAATAAACTCCGTA
12066724 TGCCTAAGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTAGG
Found at i:12067255 original size:158 final size:158
Alignment explanation
Indices: 12067043--12067385 Score: 361
Period size: 158 Copynumber: 2.2 Consensus size: 158
12067033 CCGGTCTAAT
* * * *
12067043 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAATGTGCGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACAAACGTGCGGGCGCTCAGC
* * * *
12067108 C-AGCCAG-GAGGCATAATGTGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTACCGGTC
66 CGA-CCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCC-CTGCGTGCTACCGATC
*
12067171 CCGCTGCCACAACCCTCGGTCCGGCTCGAG
129 CCGCTACCACAACCCTCGGTCCGGCTCGAG
* * ***
12067201 CTTAGACAT-GGAATGAACTACC-TATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCA
1 CTTAGAC-TGGGAATGAACT-CCGTATGCCTAAGCCAACCAACGAAACAAACGTGCGGGCGCTCA
* * * * * * *
12067264 GTCGACCGGAGAGGCAGATTGCGCAAGCTGGGGATCGACCCGATCCCCCCTGTGTGCTATCGATC
64 GCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTACCGATC
* * ** * * *
12067329 CTGCTACCGCAACCCTCGGTCTAGTTTGAT
129 CCGCTACCACAACCCTCGGTCCGGCTCGAG
*
12067359 CTTATACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
12067386 TTAGACTGGA
Statistics
Matches: 150, Mismatches: 29, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.02
158 110 0.73
159 37 0.25
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACAAACGTGCGGGCGCTCAGC
CGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTACCGATCCC
GCTACCACAACCCTCGGTCCGGCTCGAG
Found at i:12068437 original size:26 final size:26
Alignment explanation
Indices: 12068408--12068460 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12068398 CCAGTCCGAT
12068408 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
12068434 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12068460 C
1 C
12068461 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12069416 original size:684 final size:683
Alignment explanation
Indices: 12068093--12069478 Score: 1724
Period size: 684 Copynumber: 2.0 Consensus size: 683
12068083 GCTCAAACTC
* * * *
12068093 TTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCTATGAAACAAGCGCACGGGCGCTCAGTC
1 TTAGACTGGGAATGAACTCTGTATACCTAAGCCAACCTACGAAACAAGCGCACGGGCACTCAGCC
* ** * * * * *
12068158 GACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTCTACGTGCTGTCGGTCTC
66 GACCGGAGAGGCAGAATACGCAAGCCAAGGATCGACCTGATCCCCCTCTACGTGCTGCCAGTCCC
* *
12068223 ACTACCACAACCCTTAGTTCCACTGGGGCTTAGACATGGAATGAACTCCCTATGCGTAAGCCAAC
131 ACTACCACAACCCTTAGTTCCACTGGGGCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAAC
* * ** ** * *
12068288 CTACGAAACGGGCGTACGGGCACTCAGCCGGCCGGAGAGGCAAATGCGTAAGTCGGGGATCGGTC
196 CCACGAAACGGGCGTACGGGCACTCAGCCAGCCGGAGAGGCAAAAACACAAGCCAGGGATCGGTC
*
12068353 CGGTCCCCCCTGCATGCTGTCGATCCTACTGCCAAAACCCTCGATCCAGTCCGATCTTAGACTGG
261 CGATCCCCCCTGCATGCTGTCGATCCTACTGCCAAAACCCTCGATCCAGTCCGATCTTAGACTGG
* * * *
12068418 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTTAACTCACGAAACAAG
326 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTAAGCCTAAGTCAACCCACGAAACAAG
* * * * * * *
12068483 CGTGCGGGCGCTCAGTCAGCTAGAGAGGCCAGTTGGAGAGACATAATGACAAGCCGGGGATCAGC
391 CGTACGGGCACTCAGCCAGCTAGAGAGGCCAGTCGAAGAGACATAATGACAAGCCAGGGATCAAC
** * *
12068548 CCGATCCCCCTCTGCGTGCTACCGATCCTGCTATCGATCCAGCTACCACAACCCTCGGTCCAGCT
456 CCGATCCCCCTCTGCACGCTACCGATCCCGCTATCGATCCAGCTACCACAACCCTCAGTCCAGCT
* * *
12068613 GGGGCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGGGAGCGCT
521 GGGGCTTACACATGGAATGAACTCCATATGCCTAAACCAACCCACGAAACGAGCGTGGGAGCGCT
* * * *
12068678 CAGTCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGATCCCCCCTACTTGCTATCGA
586 CAGCCGACCGGAGAGGCAGAATACGCAAGCCAGGGATCGACCTGATCCCCCCTACATGCTATCGA
* * * *
12068743 TCCTACTACCGCAACCCTCGATTCGGTTTGATA
651 TCCTACTACCACAACCCTCGATCCGATTCGATA
* ** ** *
12068776 TTAGACTGGGAATGAACTCTGTATACCTAAGTCAATCC-ACGAAATGAGCGTTCGGGCACTGAGC
1 TTAGACTGGGAATGAACTCTGTATACCTAAGCCAA-CCTACGAAACAAGCGCACGGGCACTCAGC
* * * *
12068840 CGACCGGA-ATGGCATAATACGCAAGTCAAGTATCGA-CTCGATCCCCCTCTGCGTGCTGCCAGT
65 CGACCGGAGA-GGCAGAATACGCAAGCCAAGGATCGACCT-GATCCCCCTCTACGTGCTGCCAGT
* * * *
12068903 CCCACTGCCACAACCCTTAGTTTCGCTGGGGCTTAGACATGCAATGAACTCCCTATGCCTAAGCT
128 CCCACTACCACAACCCTTAGTTCCACTGGGGCTTAGACATGCAATGAACTCCCTATGCCTAAGCC
* ** * *
12068968 AACCCATGAAACGGGCGTACGGGTGCTCAGCCAGTCGGAGAGGTAGAAAACACAAGCCAGGGATC
193 AACCCACGAAACGGGCGTACGGGCACTCAGCCAGCCGGAGAGGCA-AAAACACAAGCCAGGGATC
** * ** * ** * *
12069033 GGTCCGATCCCCTTTGCATTCTGTCGATCCTGTTGTCGCAACCCTCGGTAC-GATCCGATCTTAG
257 GGTCCGATCCCCCCTGCATGCTGTCGATCCTACTGCCAAAACCCTCGATCCAG-TCCGATCTTAG
*
12069097 ACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTAAGCCTAAGTCAACCCACGAA
321 ACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTAAGCCTAAGTCAACCCACGAA
* * * * * *
12069162 ACGAGCGTATGGGCACTCAGCC-GATCGGAGAGGCCGGTCGAAGAGACATAATGCACAAGTCAGG
386 ACAAGCGTACGGGCACTCAGCCAGCT-AGAGAGGCCAGTCGAAGAGACATAATG-ACAAGCCAGG
* * *
12069226 GATTAACCCGATCCCCCTCTGCACGCTACCGATCCCGCTGTCGGTCCAGCTACCACAACCCTCAG
449 GATCAACCCGATCCCCCTCTGCACGCTACCGATCCCGCTATCGATCCAGCTACCACAACCCTCAG
* * * *
12069291 TCCGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAACCAACCCACGAAACTAGCGTGT
514 TCCAGCTGGGGCTTACACATGGAATGAACTCCATATGCCTAAACCAACCCACGAAACGAGCGTGG
* * * * *
12069356 GAGTGCTCAGCCGACCGGAGAGGCAGAATACGCAAGTCGGGGATC-AGCTCGGT-CCCCCTACAT
579 GAGCGCTCAGCCGACCGGAGAGGCAGAATACGCAAGCCAGGGATCGACCT-GATCCCCCCTACAT
* * * *
12069419 GCTGTCGATCCTGCTGCCACAACCCTCGATCCGATTCGATC
643 GCTATCGATCCTACTACCACAACCCTCGATCCGATTCGATA
* *
12069460 TTACACTGGAAATGAACTC
1 TTAGACTGGGAATGAACTC
12069479 CATATGCTTA
Statistics
Matches: 592, Mismatches: 103, Indels: 15
0.83 0.15 0.02
Matches are distributed among these distances:
682 3 0.01
683 197 0.33
684 228 0.39
685 164 0.28
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (683 bp):
TTAGACTGGGAATGAACTCTGTATACCTAAGCCAACCTACGAAACAAGCGCACGGGCACTCAGCC
GACCGGAGAGGCAGAATACGCAAGCCAAGGATCGACCTGATCCCCCTCTACGTGCTGCCAGTCCC
ACTACCACAACCCTTAGTTCCACTGGGGCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACGGGCGTACGGGCACTCAGCCAGCCGGAGAGGCAAAAACACAAGCCAGGGATCGGTC
CGATCCCCCCTGCATGCTGTCGATCCTACTGCCAAAACCCTCGATCCAGTCCGATCTTAGACTGG
GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTAAGCCTAAGTCAACCCACGAAACAAG
CGTACGGGCACTCAGCCAGCTAGAGAGGCCAGTCGAAGAGACATAATGACAAGCCAGGGATCAAC
CCGATCCCCCTCTGCACGCTACCGATCCCGCTATCGATCCAGCTACCACAACCCTCAGTCCAGCT
GGGGCTTACACATGGAATGAACTCCATATGCCTAAACCAACCCACGAAACGAGCGTGGGAGCGCT
CAGCCGACCGGAGAGGCAGAATACGCAAGCCAGGGATCGACCTGATCCCCCCTACATGCTATCGA
TCCTACTACCACAACCCTCGATCCGATTCGATA
Found at i:12069717 original size:26 final size:26
Alignment explanation
Indices: 12069677--12069749 Score: 137
Period size: 26 Copynumber: 2.8 Consensus size: 26
12069667 TCTTTGACTG
*
12069677 GGAATGAACTTCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAT
12069703 GGAATGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAT
12069729 GGAATGAACTCCGTATGCTTA
1 GGAATGAACTCCGTATGCTTA
12069750 AGCCAACCCA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGACAT
Found at i:12070259 original size:26 final size:26
Alignment explanation
Indices: 12070221--12070273 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12070211 TCTATCTGAT
12070221 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
12070247 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
12070273 C
1 C
12070274 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12070725 original size:158 final size:158
Alignment explanation
Indices: 12070247--12070747 Score: 437
Period size: 158 Copynumber: 3.2 Consensus size: 158
12070237 ACTCCATATG
* **
12070247 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAC-GAGCGTACGGGCACTCAA
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGCGTACGGGTGCTCAA
* * * * * * *
12070311 CTGATCGGAGAGCCAGAATGCGCAAGCCGAGAATC-GACCCGGTCTCTCCTGCGTGCTGTCGATC
65 CTGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCAG-CCCGGTCCCCCCTGCGTGCTATCGATC
* * *
12070375 CTACT-ACTGTAACCCT-TAGTCCG-GTCTGAT
129 CTACTGAC-GTAACCCTCGA-TCAGACTC-GAT
* * * *
12070405 CTTAGACTGGCAATGAACTCCGTATGCCTAAGTCAACCCA-TAAA-ATGAGCATACGGGTGCTGA
1 CTTAGACTGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACA-GAGCGTACGGGTGCTCA
* ** * * * *
12070468 GCCAGTCGGAGAGGCATAATGCGCAAGCTGCGGATCAGCTC-GACCCCCTCTGCGTGCTATCGAT
64 ACTGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCAGCCCGGTCCCCC-CTGCGTGCTATCGAT
** * * * * **
12070532 CCCGCTGCCATAACCCTCTG-TCTGACTGGGG
128 CCTACTGACGTAACCCTC-GATCAGACTCGAT
* * *
12070563 CTTAGACATGGAATGAACTCCCTATGCCTGAGCCAACCCACGAAACAG-GCGTGCGGGTGCTCAA
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGCGTACGGGTGCTCAA
* * * * * *
12070627 CTGGCCGGAGAGGCAGAATGCGTAAGCTGGGGATCAGCCCGGTCCCCCCTGTGTGTTATCGATGC
65 CTGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCC
* * *
12070692 TACTGTCGCAACCCTCGATCAGATTCGAT
130 TACTGACGTAACCCTCGATCAGACTCGAT
12070721 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
12070748 TTAGACTAGG
Statistics
Matches: 267, Mismatches: 61, Indels: 30
0.75 0.17 0.08
Matches are distributed among these distances:
157 12 0.04
158 238 0.89
159 16 0.06
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGCGTACGGGTGCTCAAC
TGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCCT
ACTGACGTAACCCTCGATCAGACTCGAT
Found at i:12070772 original size:26 final size:26
Alignment explanation
Indices: 12070721--12070773 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12070711 CAGATTCGAT
*
12070721 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12070747 CTTAGACTAGGG-ATGAACTCTATATG
1 CTTAGACT-GGGAATGAACTCCATATG
12070773 C
1 C
12070774 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12071738 original size:26 final size:26
Alignment explanation
Indices: 12071709--12071760 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12071699 TGGTTCGATT
*
12071709 TTAGACTGAGAACGAACTCTGTATGC
1 TTAGACAGAGAACGAACTCTGTATGC
* *
12071735 TTAGACAGTGAATGAACTCTGTATGC
1 TTAGACAGAGAACGAACTCTGTATGC
12071761 CTAAGCAAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
TTAGACAGAGAACGAACTCTGTATGC
Found at i:12072808 original size:159 final size:158
Alignment explanation
Indices: 12072377--12072812 Score: 484
Period size: 158 Copynumber: 2.8 Consensus size: 158
12072367 TTATCGATCC
* *
12072377 TGCTGTCGGTCTTGCTGCCACAACCCTCGGTCC-GCTGGGTCTTAGACATGGAATGAACTCCGTA
1 TGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGTTGGGTCTTAGACATGGAATGAACTCCGTA
* * * *
12072441 TGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGTCGAAGAGGCAGAATGCGTAA
66 TGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCATAA
** *
12072506 GCCATGGACCGGCCTGATCCCCCTTGCA
131 GCCAAAGACCGGCCTGATCACCCTTGCA
* ** ** * ** * *
12072534 TGCTGTCGATCCTGCT-CTCGTAACCCTCATTCTGGTCT-AATTTTAGAC-TAGGAATGAACTTC
1 TGCTGTCGGTCCTGCTGC-CACAACCCTCGGTCCGGT-TGGGTCTTAGACAT-GGAATGAACTCC
* * * * * * * * *
12072596 GTATGCCGAAGTCAACCCACGAAACGAGCGTACGGGTGCTGAGTCGGCTGGAGAGGCATAATGCA
63 GTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCA
*
12072661 TAAGCCAAAGATCGGCCTGATCACCCTCTGCA
128 TAAGCCAAAGACCGGCCTGATCACCCT-TGCA
* * * *
12072693 TGCTGTCGGTCGTGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGAAATGAACTCCCTA
1 TGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGTTGGGTCTTAGACATGGAATGAACTCCGTA
* * *
12072758 TGCCTAAGCCAACCCACAAAACGGGTGTGCGGGCGCTCAGCCAGCCGGAGAGGCA
66 TGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCGGAGAGGCA
12072813 AGATGTGCAA
Statistics
Matches: 217, Mismatches: 54, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
156 1 0.00
157 25 0.12
158 95 0.44
159 94 0.43
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
TGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGTTGGGTCTTAGACATGGAATGAACTCCGTA
TGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCATAA
GCCAAAGACCGGCCTGATCACCCTTGCA
Found at i:12072825 original size:159 final size:158
Alignment explanation
Indices: 12072377--12072817 Score: 471
Period size: 159 Copynumber: 2.8 Consensus size: 158
12072367 TTATCGATCC
* *
12072377 TGCTGTCGGTCTTGCTGCCACAACCCTCGGTCC-GCTGGGTCTTAGACATGGAATGAACTCCGTA
1 TGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGTTGGGTCTTAGACATGGAATGAACTCCGTA
* * *
12072441 TGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGTCGAAGAGGC-AGAATGCGTA
66 TGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCGGAGAGGCAAG-ATGCGTA
** *
12072505 AGCCATGGACCGGCCTGATCCCCCTTGCA
130 AGCCAAAGACCGGCCTGATCACCCTTGCA
* ** ** * ** * *
12072534 TGCTGTCGATCCTGCT-CTCGTAACCCTCATTCTGGTCT-AATTTTAGAC-TAGGAATGAACTTC
1 TGCTGTCGGTCCTGCTGC-CACAACCCTCGGTCCGGT-TGGGTCTTAGACAT-GGAATGAACTCC
* * * * * * * *
12072596 GTATGCCGAAGTCAACCCACGAAACGAGCGTACGGGTGCTGAGTCGGCTGGAGAGGCATA-ATGC
63 GTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCGGAGAGGCA-AGATGC
* *
12072660 ATAAGCCAAAGATCGGCCTGATCACCCTCTGCA
127 GTAAGCCAAAGACCGGCCTGATCACCCT-TGCA
* * * *
12072693 TGCTGTCGGTCGTGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGAAATGAACTCCCTA
1 TGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGTTGGGTCTTAGACATGGAATGAACTCCGTA
* * *
12072758 TGCCTAAGCCAACCCACAAAACGGGTGTGCGGGCGCTCAGCCAGCCGGAGAGGCAAGATG
66 TGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCGGAGAGGCAAGATG
12072818 TGCAAGCCGG
Statistics
Matches: 220, Mismatches: 53, Indels: 20
0.75 0.18 0.07
Matches are distributed among these distances:
156 1 0.00
157 25 0.11
158 94 0.43
159 97 0.44
160 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
TGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGTTGGGTCTTAGACATGGAATGAACTCCGTA
TGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCGGAGAGGCAAGATGCGTAA
GCCAAAGACCGGCCTGATCACCCTTGCA
Found at i:12073758 original size:26 final size:26
Alignment explanation
Indices: 12073729--12073781 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12073719 CCGGTTCGAT
12073729 CTTACACT-GGGAAAGAACTCCGTATG
1 CTTACACTGGGGAAA-AACTCCGTATG
* *
12073755 CTTAGACTGGGGATAAACTCCGTATG
1 CTTACACTGGGGAAAAACTCCGTATG
12073781 C
1 C
12073782 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTACACTGGGGAAAAACTCCGTATG
Found at i:12073890 original size:184 final size:184
Alignment explanation
Indices: 12073570--12074082 Score: 546
Period size: 184 Copynumber: 2.8 Consensus size: 184
12073560 TCTGGCTGGG
* * * * * *
12073570 GCTTAGACATGGAATGAAGTCCCTATGCCTAAGCCAACCCAAAAAATGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAA
* * * *
12073635 CCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTACCGATCT
66 CAGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTACCGACCC
* * *
12073700 TACTGCCGCAACCCTCAGTCCGGTTCGATCTTACACTGGGAAAGAACTCCGTAT
131 TACTGCCGCAACCCTCAGTCCAGTCCGATCTTACACTAGGAAAGAACTCCGTAT
* * * * *
12073754 GCTTAGAC-TGGGGATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCTCTCA
1 GCTTAGACAT-GGAATAAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCA
* * * ***
12073818 ACAGGCCGGAGAGGTAGAATGCGTAAGCCGGGGATCGGCTCGATCCGCCCTGCGTGCTGTGGACC
65 ACAGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTACCGACC
* * * * * *
12073883 CTACTGCCGCAAGCCTCGGTCTAGTCCGATCTTAGACTAGGAATGAACTCTGTAT
130 CTACTGCCGCAACCCTCAGTCCAGTCCGATCTTACACTAGGAAAGAACTCCGTAT
* * * * *
12073938 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCA-
* * * * * * * * * * * *
12074003 TC-GGCCAGAGACGCAGAATGCGCAAG-CTGGGACCGACCCGATCCCCCCTGCATGCTATCGATC
65 ACAGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTACCGACC
* *
12074066 CTGCTACCGCAACCCTC
130 CTACTGCCGCAACCCTC
12074083 GCTGTCGGGC
Statistics
Matches: 270, Mismatches: 56, Indels: 7
0.81 0.17 0.02
Matches are distributed among these distances:
183 43 0.16
184 225 0.83
185 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (184 bp):
GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAA
CAGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTACCGACCC
TACTGCCGCAACCCTCAGTCCAGTCCGATCTTACACTAGGAAAGAACTCCGTAT
Found at i:12073951 original size:26 final size:26
Alignment explanation
Indices: 12073913--12073965 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
12073903 CTAGTCCGAT
12073913 CTTAGACTAGGAATGAAC-TCTGTATG
1 CTTAGACTAGGAATGAACTTC-GTATG
12073939 CTTAGAC-ATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATGAACTTCGTATG
12073965 C
1 C
12073966 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 22 0.88
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:12074453 original size:26 final size:26
Alignment explanation
Indices: 12074424--12074476 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12074414 CCGGTCCGAT
12074424 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12074450 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12074476 C
1 C
12074477 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12076369 original size:26 final size:26
Alignment explanation
Indices: 12076333--12076385 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12076323 TCGGTTTGAT
12076333 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12076359 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12076385 C
1 C
12076386 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12078289 original size:26 final size:26
Alignment explanation
Indices: 12078260--12078310 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12078250 TGGTCTGATC
*
12078260 TTAGAC-TAGGAATGAACTCTGTATGG
1 TTAGACAT-GGAATGAACTCCGTATGG
12078286 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
12078311 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGG
Found at i:12078785 original size:26 final size:26
Alignment explanation
Indices: 12078756--12078806 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12078746 TGGTCCGGTC
*
12078756 TTAGACTGGGAATGAACTCTGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
*
12078782 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
12078807 CCGAAGTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:12079027 original size:508 final size:506
Alignment explanation
Indices: 12077928--12079743 Score: 1232
Period size: 508 Copynumber: 3.5 Consensus size: 506
12077918 AACTCCGTAT
* * *
12077928 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
*
12077993 CCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATC
66 CCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATC
* * *
12078058 CCACTGCCACAACCCTCGGTCCGATTAGGGCTTAGACATGGAATGAACTCCCATATGCCTAAGCC
131 CCACTGCCACAACCCTCGATCCGACTAGGGCTTACACATGGAATGAACTCCCATATGCCTAAGCC
* * *
12078123 AACCCACGAAACGGGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCAGAATGCGCAAGTTGGGGATC
196 AACCCACG-AA---GCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCACAAGTCGGGGATC
* * * *
12078188 GGTCGGGTCCCCCCTACGTGTTGTCTATCCTGTTGCCGGTCCTGCTACTGCAAGCCTCGGTCTGG
257 GGCCGGCTCCCCCC-AC--G-TGTCTATCCTGTT-CCGGTCCTGCTACCGCAAGCCTCGATCTGG
* *
12078253 TCTGATCTTAGACTAGGAATGAACTCTGTATGGTTAGACATGGAATGAACTCCGTATGCCTAAGC
317 TCCGATCTTAGACTAGGAATGAACTCTGTATGGTTAGACATGGAATGAACTCCGTATGCCGAAGC
* * * * * * ***
12078318 CAACCCACGAAACGAGTGTCCGGACGCTCAGTCGGTCGGAGAGGCAGAATGCACAAGTTGGGGAT
382 CAACCCACAAAACAAGCGTACGGACGCTCAATCGATCGGAGAGGCAGAATGCACAAGCCAGGGAT
* * * *
12078383 CAACCTGATCCCGCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCAGTTTGA
447 CAACCTGATCCCGCACTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCAGCTGGA
* * * * * * * * * *
12078443 TCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACCAAATGAGTGTTCGAGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCA
* * ** * ** * * *
12078507 GCCAGTCGGAGAGGCATAATGTGCAAGTCAGGGATCGGTCCGGTCCCCCTCTTCGTGCTGTCGAT
65 GCCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGAT
* *
12078572 CCCGCTGCCACAACCCTCGATCCGACTGGGGCTTACACATGGAATGAACTCCC-TATGCCTAAGC
130 CCCACTGCCACAACCCTCGATCCGACTAGGGCTTACACATGGAATGAACTCCCATATGCCTAAGC
12078636 CAACCCACG-A-CGTGCGGGCGCTCAGCCCA-CCGGAGAGGCAGAATGCACAAGTCGGGGATCGG
195 CAACCCACGAAGCGTGCGGGCGCTCAG-CCAGCCGGAGAGGCAGAATGCACAAGTCGGGGATCGG
* * * * *
12078698 CCTGCT-CTCCC-C-TG-C-ATGCTG-T-CGAG-CCTGCTACCGCAA-CCATCTATCTGGTCCGG
259 CCGGCTCCCCCCACGTGTCTATCCTGTTCCG-GTCCTGCTACCGCAAGCC-TCGATCTGGTCCGA
* * * **
12078754 TCTTAGACTGGGAATGAACTCTGTATGTTTAGAC-TGGGGATGAACTCCGTATGCCGAAGTTAAC
322 TCTTAGACTAGGAATGAACTCTGTATGGTTAGACAT-GGAATGAACTCCGTATGCCGAAGCCAAC
* * *
12078818 CCACAAAACAAGCGTACGGGCGCTCAATCGATCGGAGAGTCATAATGCACAAGCCAGGGATCAAC
386 CCACAAAACAAGCGTACGGACGCTCAATCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCAAC
* * * *
12078883 GC-GGTCCCCTTTTGCGTATTGTCGATCCCGCTGTCGGTCCTGCTGCCACAACCCT-AGGTCCGG
451 -CTGAT-CCC----GC--ACTG-CG-T---GCTGTCGATCCTGCTGCCACAACCCTCA-GTCCAG
*
12078946 CTGGG
502 CTGGA
*
12078951 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
* * ** * * * * *
12079016 TCGGCCGGAGAGGCAGAATGCGTAAACC-GAGGATC-AGCCCGGTCCACCCT-TACGTGCTACTG
66 CCGGTCGGAGAGGCAGAATGCACAAGCCAG-GGATCGA-CCCGATCC-CCCTCTGCGTGCTGCCG
** * * * *
12079078 ATCCTGCCGCCGCAACCCTAGGTTCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGA
128 ATCCCACTGCCACAA-CC------C--TC-GATC--CGACT----A-G------G---GCTTACA
* * * *
12079143 CATGGAATGAACT-CCATATGCCTAAGCCAAGCCACGGAACGAGCGTACGGGTGCTCAGCTAGCC
167 CATGGAATGAACTCCCATATGCCTAAGCCAACCCAC-G-A--AGCGTGCGGGCGCTCAGCCAGCC
* * * * * * * *
12079207 AGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTG-C--T-C---T-CGAT
228 GGAGAGGCAGAATGCACAAGTCGGGGATCGGCCGGCTCCCCCC-ACGTGTCTATCCTGTTCCGGT
* * * * * * * * *
12079264 CCTGCTGCCGTAACCCTAGGT-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAA
292 CCTGCTACCGCAAGCCTCGATCT-GGTCCGATCTTAGACTAGGAATGAACTCTGTATGGTTAG-A
* * * * * * *
12079328 CATGGAATGAACTCCGTATGCCTAAGCCAACCGCACGACAACGAGCG-GCGGGCGCTC-AGCTGG
355 CATGGAATGAACTCCGTATGCCGAAGCCAACC-CAC-AAAACAAGCGTACGGACGCTCAATC-GA
** * * * *
12079391 TCGGAGAGGCAGAATGCGTAAGCC-GAGGATCGA-CTCGGTCCC-CACCT-CTGTGATATCGATC
417 TCGGAGAGGCAGAATGCACAAGCCAG-GGATCAACCT-GATCCCGCA-CTGC-GTGCTGTCGATC
* * *
12079452 TTGCTGCCACAACCCTCAGTCC-GATCCGA
478 CTGCTGCCACAACCCTCAGTCCAGCT-GGA
* * ** * * * *
12079481 TCTTAGGC-TGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCA
* ** * * * * * * * *
12079545 ACCGACCGGAGAGGCATAATGCGCAAG-CTGGAGATCGGCCCAATCCCCCTCTACGTGCTGTCGG
65 GCCGGTCGGAGAGGCAGAATGCACAAGCCAGG-GATCGACCCGATCCCCCTCTGCGTGCTGCCGA
** * * * * * *
12079609 TCCTGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATTGAATGAACTCCC-TATGCCTAAG
129 TCCCACTGCCACAACCCTCGATCCGACTAGGGCTTACACATGGAATGAACTCCCATATGCCTAAG
* ** * *
12079673 CCAACCCACAAAACGGGCGTGCGGGCGCTCAGCC-GACCGGAGAGATAGATTGCGCAAG-CTGGG
194 CCAACCCAC-GAA---GCGTGCGGGCGCTCAGCCAG-CCGGAGAGGCAGAATGCACAAGTC-GGG
12079736 GATCGGCC
253 GATCGGCC
12079744 CAATCCATCC
Statistics
Matches: 1034, Mismatches: 180, Indels: 185
0.74 0.13 0.13
Matches are distributed among these distances:
495 3 0.00
496 135 0.13
497 5 0.00
498 1 0.00
499 5 0.00
500 1 0.00
501 5 0.00
503 5 0.00
504 83 0.08
505 4 0.00
507 7 0.01
508 183 0.18
509 10 0.01
512 1 0.00
513 1 0.00
514 21 0.02
515 153 0.15
517 2 0.00
518 7 0.01
520 7 0.01
521 2 0.00
523 1 0.00
525 1 0.00
529 11 0.01
530 135 0.13
531 2 0.00
533 4 0.00
534 39 0.04
535 2 0.00
536 1 0.00
539 4 0.00
540 97 0.09
541 39 0.04
542 44 0.04
543 10 0.01
544 3 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (506 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
CCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATC
CCACTGCCACAACCCTCGATCCGACTAGGGCTTACACATGGAATGAACTCCCATATGCCTAAGCC
AACCCACGAAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCC
GGCTCCCCCCACGTGTCTATCCTGTTCCGGTCCTGCTACCGCAAGCCTCGATCTGGTCCGATCTT
AGACTAGGAATGAACTCTGTATGGTTAGACATGGAATGAACTCCGTATGCCGAAGCCAACCCACA
AAACAAGCGTACGGACGCTCAATCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCAACCTGAT
CCCGCACTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCAGCTGGA
Found at i:12079162 original size:26 final size:26
Alignment explanation
Indices: 12079111--12079163 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12079101 TCGGTCTGAT
* *
12079111 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12079137 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
12079163 C
1 C
12079164 CTAAGCCAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12079333 original size:185 final size:184
Alignment explanation
Indices: 12078951--12079508 Score: 732
Period size: 185 Copynumber: 3.0 Consensus size: 184
12078941 TCCGGCTGGG
*
12078951 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCA-
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * *
12079015 ATCGGCCGGAGAGGCAGAATGCGTAAACCGAGGATC-AGCCCGGTCCACCCTTACGTGCTACT-G
66 CT-GGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGA-CCCGGTCC-CCCCTACGTGCT-CTCG
* *
12079078 ATCCTGCCGCCGCAACCCTAGGTTCGGTCTGATCTTAGACTGGGAATGAACTTCGTAT
127 ATCCTGCTGCCGCAACCCTAGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
12079136 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAGCCACGGAACGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * *
12079201 CTAGCCAGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTCTCGATCC
66 CTGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCCCCTACGTGCTCTCGATCC
*
12079266 TGCTGCCGTAACCCTAGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
131 TGCTGCCGCAACCCTAGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
*
12079320 GCTTAGAACATGGAATGAACTCCGTATGCCTAAGCCAACCGCACGACAACGAGCG-GCGGGCGCT
1 GCTTAG-ACATGGAATGAACTCCGTATGCCTAAGCCAACC-CACGA-AACGAGCGTACGGGCGCT
* * * *
12079384 CAGCTGGTCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACTCGGTCCCCACCT-CTGTGATATC
63 CAGCTGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCC-CCTAC-GTGCTCTC
* * * * * *
12079448 GATCTTGCTGCCACAACCCTCA-GTCCGATCCGATCTTAGGCTGGGAATGAACTCCGTAT
126 GATCCTGCTGCCGCAACCCT-AGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
12079507 GC
1 GC
12079509 CTAAGTTAAC
Statistics
Matches: 325, Mismatches: 39, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
183 2 0.01
184 73 0.22
185 124 0.38
186 56 0.17
187 69 0.21
188 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CTGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCCCCTACGTGCTCTCGATCC
TGCTGCCGCAACCCTAGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:12079621 original size:159 final size:157
Alignment explanation
Indices: 12079331--12079887 Score: 510
Period size: 159 Copynumber: 3.5 Consensus size: 157
12079321 CTTAGAACAT
* * **
12079331 GGAATGAACTCCGTATGCCTAAGCCAACCGCACGACAACGAGCG-GCGGGCGCTCAGCTGGTCGG
1 GGAATGAACTCCGTATGCCTAAGCCAACC-CACGA-AACGAGCGTGCAGGCGCTCAGCCGACCGG
* * * * ** * *
12079395 AGAGGCAGAATGCGTAAGC-CGAGGATCGACTCGGTCCCCACCT-CTGTGATATCGATCTTGCTG
64 AGAGGCAGAATGCGCAAGCTGGA-GATCGGCCCAATCCCC-CCTAC-GTGCTATCGATCCTGCTG
* * *
12079458 CCACAACCCTCAGTCCGATCCGATCTTAGGCTG
126 CCACAACCCTCGGTCTG-TCCGATCTTAGACTG
** * *
12079491 GGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCAGGCGCTGAACCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCGGAG
* * *
12079556 AGGCATAATGCGCAAGCTGGAGATCGGCCCAATCCCCCTCTACGTGCTGTCGGTCCTGCTGCCAC
66 AGGCAGAATGCGCAAGCTGGAGATCGGCCCAATCCCCC-CTACGTGCTATCGATCCTGCTGCCAC
* * **
12079621 AACCCTCGGTCTGGCTGGGGCTTAGACAT-
130 AACCCTCGGTCTGTC-CGATCTTAGAC-TG
* * * * *
12079650 TGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGCCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCGGAG
** * * ** * ** * * *
12079715 AGATAGATTGCGCAAGCTGGGGATCGGCCCAATCCATCCTACGTACTCCCGATCCTACTACCGCA
66 AGGCAGAATGCGCAAGCTGGAGATCGGCCCAATCCCCCCTACGTGCTATCGATCCTGCTGCCACA
* *
12079780 ACCCTCGGTCTGGTCTGTTCTTAGACTG
131 ACCCTCGGTCT-GTCCGATCTTAGACTG
* * * * * * **
12079808 GGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAACGTGCAGACGCTTAGCCGACCATAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCGGAG
*
12079873 AGGCAGGATGCGCAA
66 AGGCAGAATGCGCAA
12079888 ACCAAGGATT
Statistics
Matches: 319, Mismatches: 70, Indels: 18
0.78 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 112 0.35
159 175 0.55
160 31 0.10
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCGGAG
AGGCAGAATGCGCAAGCTGGAGATCGGCCCAATCCCCCCTACGTGCTATCGATCCTGCTGCCACA
ACCCTCGGTCTGTCCGATCTTAGACTG
Found at i:12079845 original size:158 final size:159
Alignment explanation
Indices: 12079481--12079887 Score: 464
Period size: 158 Copynumber: 2.6 Consensus size: 159
12079471 TCCGATCCGA
* * * *
12079481 TCTTAGGCTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCAGGCGCTGAA
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * ** *
12079546 CCGACCGGAGAGGCATAATGCGCAAGCTGGAGATCGGCCCAATCCCCCTCTACGTGCTGTCGGTC
66 CCGACCGGAGAGGCATAATGCGCAAGCTGGAGATCGGCCCAATCCACCTCTACGTACTCCCGATC
* *
12079611 CTGCTGCCACAACCCTCGGTCTGGCTGGG
131 CTACTACCACAACCCTCGGTCTGGCTGGG
* * * * * * *
12079640 GCTTAGACAT-TGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCA
1 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCA
* *
12079704 GCCGACCGGAGA-G-ATAGATTGCGCAAGCTGGGGATCGGCCCAATCCATC-CTACGTACTCCCG
65 GCCGACCGGAGAGGCATA-A-TGCGCAAGCTGGAGATCGGCCCAATCCACCTCTACGTACTCCCG
* *
12079766 ATCCTACTACCGCAACCCTCGGTCTGGTCT-GT
128 ATCCTACTACCACAACCCTCGGTCTGG-CTGGG
* * * * *
12079798 TCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAACGTGCAGACGCTTAG
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAG
** **
12079863 CCGACCATAGAGGCAGGATGCGCAA
66 CCGACCGGAGAGGCATAATGCGCAA
12079888 ACCAAGGATT
Statistics
Matches: 203, Mismatches: 38, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.02
158 103 0.51
159 94 0.46
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CCGACCGGAGAGGCATAATGCGCAAGCTGGAGATCGGCCCAATCCACCTCTACGTACTCCCGATC
CTACTACCACAACCCTCGGTCTGGCTGGG
Found at i:12080533 original size:26 final size:26
Alignment explanation
Indices: 12080495--12080547 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12080485 GGTTCAAACT
*
12080495 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12080521 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
12080547 C
1 C
12080548 CTATGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12081084 original size:26 final size:26
Alignment explanation
Indices: 12081046--12081098 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12081036 CCGATCCGAT
*
12081046 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAACGAACTCCATATG
12081072 CTTAGACAT-GGAACGAACTCCATATG
1 CTTAGAC-TGGGAACGAACTCCATATG
12081098 C
1 C
12081099 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:12082193 original size:26 final size:26
Alignment explanation
Indices: 12082142--12082194 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12082132 CTGATCCGAT
**
12082142 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
12082168 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
12082194 C
1 C
12082195 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:12082613 original size:157 final size:156
Alignment explanation
Indices: 12082359--12082699 Score: 425
Period size: 157 Copynumber: 2.2 Consensus size: 156
12082349 GCTCTGTATG
* *
12082359 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCACTAAACGAGTGTGCGGTGCTCAGCC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGTGTGCGGTGCTCAGCC
* * * * * *
12082424 GACTGGAGAGGTAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTGCGTGCTGTCGATCCTT
65 GACCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCTG
* *
12082489 CTACCACAACCCTCATTTTGGTCTGAT
130 CTACCACAACCCTCAGTTCGGTCTGAT
* * * *
12082516 CTTAGACTGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTGTG-GGTGCTGAGC
1 CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGA--GTGTGCGGTGCTCAGC
* *
12082580 C-AGCCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCCTGCATGCTGTCGATCC
64 CGA-CCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCC
* ** * *
12082644 TGCTGCTGCAACCCTTAGTTCGGTTTGAT
128 TGCTACCACAACCCTCAGTTCGGTCTGAT
*
12082673 GTTAGACTGGCAATGAACTCCGTATGC
1 CTTAGACTGG-AATGAACTCCGTATGC
12082700 TTAGACTGGG
Statistics
Matches: 157, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
156 36 0.23
157 101 0.64
158 20 0.13
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGTGTGCGGTGCTCAGCCG
ACCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCTGC
TACCACAACCCTCAGTTCGGTCTGAT
Found at i:12082714 original size:26 final size:26
Alignment explanation
Indices: 12082674--12082725 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12082664 CGGTTTGATG
12082674 TTAGACTGGCAATGAACTCCGTATGC
1 TTAGACTGGCAATGAACTCCGTATGC
**
12082700 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGCAATGAACTCCGTATGC
12082726 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGCAATGAACTCCGTATGC
Found at i:12082920 original size:26 final size:26
Alignment explanation
Indices: 12082882--12082934 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12082872 TCGATCTGAT
12082882 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12082908 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12082934 C
1 C
12082935 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12083108 original size:26 final size:26
Alignment explanation
Indices: 12083079--12083131 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
12083069 CCGGTCTGAT
12083079 CTTAGAC-TAGGAATGAAC-TCTGTATG
1 CTTAGACAT-GGAATGAACTTC-GTATG
12083105 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
12083131 C
1 C
12083132 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:12083132 original size:197 final size:196
Alignment explanation
Indices: 12082785--12083240 Score: 578
Period size: 197 Copynumber: 2.3 Consensus size: 196
12082775 GCTAGTCGGT
* * * * * *
12082785 GAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTACCGATCCTGTTGCTTG
1 GAGGTAGAATGCGCAAGCCAGGGATTGGCCCGATCCCCCCTGCGTGCTATCGATCCTGCTGCTTG
* * * * * *
12082850 TCCTGCAGTCACAATCCTCGGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
66 TCCTGCAGCCACAACCCGCAGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC
* * * * *
12082915 ATGGAATGAACTCTGTATGCCTAAGGCAACCCATGAAACGAGCGTACGGGCACTTAACCGATCAG
131 ATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAACCAATCAG
12082980 A
196 A
* *
12082981 GAGGTAGAATGCGCAAGCCAGGGATTGGCTCGGTCCCCCCTGCGTGCTATCGATCCTGCTG-TTG
1 GAGGTAGAATGCGCAAGCCAGGGATTGGCCCGATCCCCCCTGCGTGCTATCGATCCTGCTGCTT-
* *
12083045 GGTCCTGCTA-CCACAACCCGCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCTTA
65 -GTCCTGC-AGCCACAACCCGCAGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCTTA
** *
12083109 GACATGGAATGAACT-TCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGTGCTCAGCCAA
128 GACATGGAATGAACTCT-GTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAACCAA
*
12083173 TCGGA
192 TCAGA
* * *
12083178 GAGGTAGAATGCGCAAGCCGAGGG-TTGGCCCGATCCCTCCCCGTGTGCTGTCGATCCTGCTGC
1 GAGGTAGAATGCGCAAGCC-AGGGATTGGCCCGATCCC-CCCTGCGTGCTATCGATCCTGCTGC
12083241 GGCAACCCTC
Statistics
Matches: 223, Mismatches: 30, Indels: 11
0.84 0.11 0.04
Matches are distributed among these distances:
195 2 0.01
196 54 0.24
197 141 0.63
198 26 0.12
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (196 bp):
GAGGTAGAATGCGCAAGCCAGGGATTGGCCCGATCCCCCCTGCGTGCTATCGATCCTGCTGCTTG
TCCTGCAGCCACAACCCGCAGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC
ATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAACCAATCAG
A
Found at i:12083406 original size:159 final size:157
Alignment explanation
Indices: 12083105--12083607 Score: 445
Period size: 159 Copynumber: 3.2 Consensus size: 157
12083095 ACTCTGTATG
* * * * *
12083105 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGTGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
** * * * **** **
12083170 CAATCGGAGAGGTAGAATGCGCAAGCCGAGGG-TTGGCCCGATCCCTCCCCGTGTGCTGTCGATC
65 CGGTCGGAGAGGCAGAATGCGCAAGCC-AGGGATAGGCCCGGTCCC-CCTTACGTGCTACCGATC
* **
12083234 CTGCTGCGGCAACCCTCGGTCCGGTCTGAT
128 CTACTGCCACAACCCTCGGTCCGGTCTGAT
** * * *
12083264 CTTAGACTGGGAATGAACTCCGTATGCCTAATTCAACCCACAAAATGAGCTTGCGGGCGCTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
12083329 CGGTCGGAGAGGCATAATGTGCAAGCCGGGGATAGGCTCGGTCCCCCTCTACGTGCTGCCGGTCG
65 CGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATAGGCCCGGTCCCCCT-TACGTGCTACCGATC-
* **
12083394 C-ACTGCCACAACCCTCGGTCC-GACTGGGG
128 CTACTGCCACAACCCTCGGTCCGGTCT-GAT
* * * ** * * * *
12083423 CTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACGCATGAAACGGGCGTGTGGGTGCTCAGT
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * * **
12083488 CGGTCGGAGAGGCAGAATGCGTAAGCTAGGGATCGGCCCGGTCCCCCTTGTGTGCTACCGATCCT
65 CGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATAGGCCCGGTCCCCCTTACGTGCTACCGATCCT
* **
12083553 GCTGCCGTAACCCTCGGTCCGGTCTGAT
130 ACTGCCACAACCCTCGGTCCGGTCTGAT
*
12083581 CTTACACTAGGAATGAACTCCGTATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
12083608 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 65, Indels: 19
0.76 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 60 0.22
159 206 0.76
160 2 0.01
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCC
GGTCGGAGAGGCAGAATGCGCAAGCCAGGGATAGGCCCGGTCCCCCTTACGTGCTACCGATCCTA
CTGCCACAACCCTCGGTCCGGTCTGAT
Found at i:12083610 original size:26 final size:26
Alignment explanation
Indices: 12083581--12083633 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
12083571 CCGGTCTGAT
*
12083581 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATAAACTCCGTATG
* * * *
12083607 CTTAGACTGGGGATAAACTCTGTATG
1 CTTACACTAGGAATAAACTCCGTATG
12083633 C
1 C
12083634 CTAACTCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATAAACTCCGTATG
Found at i:12084649 original size:26 final size:26
Alignment explanation
Indices: 12084608--12084660 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12084598 TCGGTCCGAT
12084608 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
12084634 CTTAGACTTGGG-ATGAACTTTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
12084660 C
1 C
12084661 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:12085232 original size:159 final size:157
Alignment explanation
Indices: 12084765--12085272 Score: 430
Period size: 158 Copynumber: 3.2 Consensus size: 157
12084755 TGTCGATCCC
* * * *
12084765 ACTGTCGGTCCTGCTGCCACATCCCTCGGTCTGGCTGGGGCTTAGAAATGGAATGAACTCCGTAT
1 ACTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAG-AATGGAATGAACTCCGTAT
* * * * *
12084830 GCCTAAGCCAACCCATGAAAC-GAGCGTGCAGGCGCTCAGCCACCCGAAGAGGCAGATTGCGCAA
65 GCCTAAGCCAACCCATGAAACAGAGCGTACGGGCGCTCAGCCAGCCGAAGAGGCAGAATGCACAA
* * * *
12084894 GCCGAGGATCGACCTGGTCCCCCCTGCGT
130 GTCGAGGATCGGCC-CGTCCCCCCTACGT
* * ** * * ***** *
12084923 GCTGTCGATCCTGCTACCGTAACCCTCGATTCGGTCCAATCTTAGATTGGGAATGAACTCCGTAT
1 ACTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGAAT-GGAATGAACTCCGTAT
* * * * * * * * * *
12084988 GCCTAAGTCAACCCACGAAAC-GAGTGCACGGGTGCTGAGCCTGTCGGAGAGGCATAATGCACAA
65 GCCTAAGCCAACCCATGAAACAGAGCGTACGGGCGCTCAGCCAGCCGAAGAGGCAGAATGCACAA
* * ** *
12085052 GTCGCGAATTAGCCCGATCCCCTTCTACGT
130 GTCGAGGATCGGCCCG-TCCCC-CCTACGT
* * * *
12085082 ACTGTTG-TTCTCGCTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTA
1 ACTGTCGATCCT-GCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGA-ATGGAATGAACTCCGTA
* * *
12085146 TCCCTAAGCCAACCCATGAAACAG-GCGTACGGGCGCTCAGCCGGGCGAAGAGGCAGAATGCACA
64 TGCCTAAGCCAACCCATGAAACAGAGCGTACGGGCGCTCAGCCAGCCGAAGAGGCAGAATGCACA
* *
12085210 AGTCGGGGATCGGCCCAGTCCCCCATACGT
129 AGTCGAGGATCGGCCC-GTCCCCCCTACGT
* * ** *
12085240 GCTGTCGATCCTACTGCCGTAACCCTCAGTCCG
1 ACTGTCGATCCTGCTGCCACAACCCTCGGTCCG
12085273 ATCTGATCCG
Statistics
Matches: 262, Mismatches: 80, Indels: 16
0.73 0.22 0.04
Matches are distributed among these distances:
157 3 0.01
158 138 0.53
159 118 0.45
160 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.26, T:0.20
Consensus pattern (157 bp):
ACTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGAATGGAATGAACTCCGTATG
CCTAAGCCAACCCATGAAACAGAGCGTACGGGCGCTCAGCCAGCCGAAGAGGCAGAATGCACAAG
TCGAGGATCGGCCCGTCCCCCCTACGT
Found at i:12085319 original size:26 final size:26
Alignment explanation
Indices: 12085283--12085339 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
12085273 ATCTGATCCG
*
12085283 TATGCTTAGACTGGGAATGAACTCCA
1 TATGCTTAGACTGGGAATCAACTCCA
*
12085309 TATGCTTAGACTGGGAATCAACTCTA
1 TATGCTTAGACTGGGAATCAACTCCA
12085335 TATGC
1 TATGC
12085340 CTAAGTCAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
TATGCTTAGACTGGGAATCAACTCCA
Found at i:12085989 original size:26 final size:26
Alignment explanation
Indices: 12085938--12085990 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12085928 CTGGTTCGAT
* *
12085938 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12085964 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
12085990 C
1 C
12085991 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12086321 original size:26 final size:26
Alignment explanation
Indices: 12086292--12086344 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12086282 CCGGTCTGAT
12086292 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
12086318 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
12086344 C
1 C
12086345 CTAAGCCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:12086805 original size:26 final size:26
Alignment explanation
Indices: 12086764--12086816 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12086754 CCGATCCGAT
* *
12086764 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACACCATATG
**
12086790 CTTAGACTGGGGATGAACACCATATG
1 CTTAGACTGGAAATGAACACCATATG
12086816 C
1 C
12086817 ATAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACACCATATG
Found at i:12087885 original size:159 final size:157
Alignment explanation
Indices: 12087539--12087978 Score: 370
Period size: 159 Copynumber: 2.8 Consensus size: 157
12087529 TCCATACGGC
*** * * * *
12087539 TAAGCCAACCCACGAAACGAGCGCGTGGGCACTCAG-CCTGTCGGAGAGGTAGAATGCACAAGCT
1 TAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGTCC-GCCTGAGAGGCAGAATGCACAAGC-
** * * * * ** ** * * *
12087603 GGGGATCGGCCTGGTCCCCCCTATGTGCTATCGATCCTACTGCTGCAACCCTCGATTCGG-TCCG
64 CAGGATCAGCCCGCTCCCCTCTATGTGCTATCGATCCCGCTGCCACAACCCTCGGTCCGGCT-GG
** * *
12087667 ATCTTCGAC-TGGGAATGAACTCCGCATGCA
128 GGCTTAGACAT-AGAATGAACTCCGCATGCA
** * * *
12087697 TAAGTTAACCCACGAAACGAGCGTACGGGCGTTGAG-CCAGCC-GAAGAGGCATAATGCACAAGC
1 TAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGTCC-GCCTG-AGAGGCAGAATGCACAAGC
* * *
12087760 CAGAGATCGGCCCGCTCCCCCTCTATGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCTG
64 CAG-GATCAGCCCGCT-CCCCTCTATGTGCTATCGATCCCGCTGCCACAACCCTCGGTCCGGCTG
*
12087825 GGGCTTAGACATAGAATGAACTCC-CTATGCC
127 GGGCTTAGACATAGAATGAACTCCGC-ATGCA
* * * ** *
12087856 TAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGTCCGCCTGAGAGGTAGAATGTGCAAGCCC
1 TAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGTCCGCCTGAGAGGCAGAATGCACAAGCCA
* * * *
12087921 GGATCAGCCCGGTCCCCTCTGTGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCCGG
66 GGATCAGCCCGCTCCCCTCTATGTGCTATCGATCCCGCTGCCACAACCCTCGGTCCGG
12087979 TCTGATCTTA
Statistics
Matches: 225, Mismatches: 49, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
157 42 0.19
158 70 0.31
159 108 0.48
160 5 0.02
ACGTcount: A:0.22, C:0.33, G:0.28, T:0.18
Consensus pattern (157 bp):
TAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGTCCGCCTGAGAGGCAGAATGCACAAGCCA
GGATCAGCCCGCTCCCCTCTATGTGCTATCGATCCCGCTGCCACAACCCTCGGTCCGGCTGGGGC
TTAGACATAGAATGAACTCCGCATGCA
Found at i:12088165 original size:12 final size:12
Alignment explanation
Indices: 12088148--12088173 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
12088138 TGCATACTGT
12088148 CGATCCCGCTGC
1 CGATCCCGCTGC
12088160 CGATCCCGCTGC
1 CGATCCCGCTGC
12088172 CG
1 CG
12088174 GTCCTGCTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.50, G:0.27, T:0.15
Consensus pattern (12 bp):
CGATCCCGCTGC
Found at i:12089053 original size:26 final size:26
Alignment explanation
Indices: 12089010--12089065 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
12089000 CCAGTCCTAT
12089010 CTTAGACTGAGAAAGAACTCCGTATG
1 CTTAGACTGAGAAAGAACTCCGTATG
* *
12089036 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAAAGAACTCCGTATG
12089062 CTTA
1 CTTA
12089066 ACTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAAAGAACTCCGTATG
Found at i:12089257 original size:26 final size:26
Alignment explanation
Indices: 12089206--12089258 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12089196 TCAGTCTGAT
*
12089206 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12089232 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
12089258 C
1 C
12089259 CTAAGCAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12089332 original size:196 final size:196
Alignment explanation
Indices: 12088991--12089367 Score: 465
Period size: 196 Copynumber: 1.9 Consensus size: 196
12088981 CTGCTACCGC
*
12088991 ACCCTCGATCCAGTCCTATCTTAGACTGAGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTC
1 ACCCTCGATCCAGTCCTATCTTAGACTGAGAAAGAACTCCATATGCTTAGACTGGGAATGAACTC
* * * *
12089056 CGTATGCTTAACTCAACCCACGAAATGAGCGTGCAGGCATTCAATCGATCGAAAAGGCAGAATGC
66 CGTATGCCTAACTAAACCCACGAAACGAGCGTGCAGGCACTCAATCGATCGAAAAGGCAGAATGC
** * *
12089121 GTAACCTGGGGATCGGCTTGATCCCCCTTACGTGCTACCGATCCTGCTACTGGTCCTGCTGTCGT
131 GTAACCTAAGGATCGGCCTGATCCCCCCTACGTGCTACCGATCCTGCTACTGGTCCTGCTGTCGT
12089186 A
196 A
* * * * *
12089187 ACCCTCGGTTCAGT-CTGATCTTAGACTGGGAATGAACTCTATATGCTTAGACAT-GGAATGAAC
1 ACCCTCGATCCAGTCCT-ATCTTAGACTGAGAAAGAACTCCATATGCTTAGAC-TGGGAATGAAC
* * ** * * * *
12089250 TCCGTATGCCTAAGC-AAACCCATGAAACGAGTGTGTGGGCGCTCAATCGGTCGGAGAGGCAGAA
64 TCCGTATGCCTAA-CTAAACCCACGAAACGAGCGTGCAGGCACTCAATCGATCGAAAAGGCAGAA
* **
12089314 TGCGTAAGCC-AAGGATCGGCCTGGTCCCCCCTACGTGCTATTGATCCTGCTACT
128 TGCGTAA-CCTAAGGATCGGCCTGATCCCCCCTACGTGCTACCGATCCTGCTACT
12089368 ACAACCCTCG
Statistics
Matches: 152, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
195 2 0.01
196 146 0.96
197 4 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (196 bp):
ACCCTCGATCCAGTCCTATCTTAGACTGAGAAAGAACTCCATATGCTTAGACTGGGAATGAACTC
CGTATGCCTAACTAAACCCACGAAACGAGCGTGCAGGCACTCAATCGATCGAAAAGGCAGAATGC
GTAACCTAAGGATCGGCCTGATCCCCCCTACGTGCTACCGATCCTGCTACTGGTCCTGCTGTCGT
A
Found at i:12089579 original size:159 final size:157
Alignment explanation
Indices: 12089232--12089669 Score: 422
Period size: 159 Copynumber: 2.8 Consensus size: 157
12089222 ACTCTATATG
* * **
12089232 CTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCATGAAACGAGTGTGTGGGCGCTCAAT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCATGAAACGAGCGAGCAGGCGCTCAAT
* * * *
12089297 CGGTCGGAGAGGCAGAATGCGTAAGCCAAGGATCGGCCTGGTCCCCCCTACGTGCTATTGATCCT
65 CGGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCAGCCTGGTCCCCCCTACGTGCTATTGATCCC
* *
12089362 GCTACTACAACCCTCGGTGCAGTCTGAT
130 GCTACCACAACCCTCGGTGCAGGCTGAT
* * *
12089390 CTTAGAC-TGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGAGCAGGTGCT-GA
1 CTTAGACATG-GAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGAGCAGGCGCTCAA
* * * * * * *
12089453 GCTGGCCGGAGAGGCATAATGCGCAAGTCAGGGATCAG-CTCGGTCCCCTTCTGCGTGCTGTTGA
64 TC-GGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCAGCCT-GGTCCCC-CCTACGTGCTATTGA
* * *
12089517 TCCCGCTGCCACAACCCTCGGT-CCGGCTGGGGT
126 TCCCGCTACCACAACCCTCGGTGCAGGCT--GAT
* * *
12089550 -TTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCATGAAATGGGCGTGCAGGCGCTCAA
1 CTTAGACATGGAATGAACTC-CGTATGCCTAAG-CAACCCATGAAACGAGCGAGCAGGCGCTCAA
** * * ** * *
12089613 TCGATCGAAGAGGCAGAATACGCAAGCCTGGGATC-GACCCGATCCCCCCTACGTGCT
64 TCGGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCAG-CCTGGTCCCCCCTACGTGCT
12089670 GCCGTAACCC
Statistics
Matches: 226, Mismatches: 42, Indels: 24
0.77 0.14 0.08
Matches are distributed among these distances:
157 6 0.03
158 99 0.44
159 113 0.50
160 8 0.04
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCATGAAACGAGCGAGCAGGCGCTCAATC
GGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCAGCCTGGTCCCCCCTACGTGCTATTGATCCCG
CTACCACAACCCTCGGTGCAGGCTGAT
Found at i:12089802 original size:305 final size:309
Alignment explanation
Indices: 12089231--12089967 Score: 873
Period size: 305 Copynumber: 2.4 Consensus size: 309
12089221 AACTCTATAT
* * * *
12089231 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCATGAAACGAGTGTGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAA
* * ** * * *
12089296 TCGGTCGGAGAGGCAGAATGCGTAAGCCAAGGATCGGCCTGGTCCCCCCTACGTGCTATTGATCC
65 TCGATCGGAGAGGCAGAATGCGCAAGCCTGGGATCGACCCGATCCCCCCTACGTGC--TTGA-CC
* * * *
12089361 TGCTACTACAACCCTCGGTGCAGTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAA
127 TG---CTA-AACCCTCGGTCCAATCCGATCTTAGACTGAGAATGAACTCCGTATGCATAAGTCAA
* * ** * *
12089426 CCCACGAAACGAGCGAGCAGGTGCTGAGCTGGCCGGAGAGGCATAATGCGCAAGTCAGGGATCAG
188 CCCACGAAACGAGCGAGCAGGCGCTAAGCCAGCCGAAAAGGCATAATGCGCAAGTCAGGGATCAG
* * ** *
12089491 CTCGGTCCCCTTCTGCGTGCTGTTGATCCCGCTGCCACAACCCTCGGTCCGGCTGGG
253 CTCGGTCCCCCTCTGCGTGATGCCGATCCCGCTGCCACAACCCTCAGTCCGGCTGGG
* * *
12089548 GTTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCATGAAATGGGCGTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTC-CTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAA
* *
12089613 TCGATCGAAGAGGCAGAATACGCAAGCCTGGGATCGACCCGATCCCCCCTACGTGC-TG-CC-G-
65 TCGATCGGAGAGGCAGAATGCGCAAGCCTGGGATCGACCCGATCCCCCCTACGTGCTTGACCTGC
* *
12089674 T-AACCCTCTGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGA
130 TAAACCCTCGGTCCAATCCGATCTTAGACTGAGAATGAACTCCGTATGCATAAGTCAACCCACGA
* * *
12089738 AACGAGCGTA-CGGGCGTTAAGCCAGCCGAAAAGGCATAATGCGCAAG-CTGGGGATC-GACTCG
195 AACGAGCG-AGCAGGCGCTAAGCCAGCCGAAAAGGCATAATGCGCAAGTC-AGGGATCAG-CTCG
* * *
12089800 GTCCCCCTCTGTGTGATGCCGATCCCGCTGCCACAACCTTCAGTCTGGCTGGG
257 GTCCCCCTCTGCGTGATGCCGATCCCGCTGCCACAACCCTCAGTCCGGCTGGG
* * *
12089853 GCTTAGACATGGAATGAACTACCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAA
* *
12089918 CCGA-CTGGAGAGGCAGAATGCGCAAG-CTGGGGATCGACACGATCCCCCCT
65 TCGATC-GGAGAGGCAGAATGCGCAAGCCT-GGGATCGACCCGATCCCCCCT
12089968 TTGTGCTGTT
Statistics
Matches: 364, Mismatches: 49, Indels: 26
0.83 0.11 0.06
Matches are distributed among these distances:
304 5 0.01
305 247 0.68
306 2 0.01
307 1 0.00
311 1 0.00
312 2 0.01
314 2 0.01
317 103 0.28
318 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (309 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAAT
CGATCGGAGAGGCAGAATGCGCAAGCCTGGGATCGACCCGATCCCCCCTACGTGCTTGACCTGCT
AAACCCTCGGTCCAATCCGATCTTAGACTGAGAATGAACTCCGTATGCATAAGTCAACCCACGAA
ACGAGCGAGCAGGCGCTAAGCCAGCCGAAAAGGCATAATGCGCAAGTCAGGGATCAGCTCGGTCC
CCCTCTGCGTGATGCCGATCCCGCTGCCACAACCCTCAGTCCGGCTGGG
Found at i:12091311 original size:159 final size:157
Alignment explanation
Indices: 12090965--12091406 Score: 503
Period size: 159 Copynumber: 2.8 Consensus size: 157
12090955 AACTCCATAT
* * *
12090965 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCTCGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
12091030 CCGGTCGGAGAAGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTACGTGCTGTCGATCCT
66 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTGCGTGCTGTCGAGCCC
* *
12091095 GCTGCCGCAACCCTCGGTTTGATCCGA
131 GCTGCCACAACCCTCGGTTGGATCCGA
* * * * * *
12091122 TCTTAGACAAGGAATGAACTCCGTGTGCCTAAGTCAACCCTCAAAACGAGCGTGCGGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCTCGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
12091187 CCGACCGAAGAGGTATAATGCGCAAGTCGGGGATCGGCCTGGTCCTCCTCTGCGTGCTGTCG-GC
66 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCC-CC-CTGCGTGCTGTCGAGC
* * *
12091251 CGCGCTGCCACAACCCTCGGTCTGGCT-GGG
129 C-CGCTGCCACAACCCTCGGT-TGGATCCGA
* * * *
12091281 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCATCCCAT-GAAACGACCGTGCAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC-TCGAAACGAGCGTGCGGGCGCTCA
** * *
12091345 GTTGGCCGGAGAGGGAGAATGCGTAAGTCGGGGATCGGCCCGATCCCCCTGCGTGCTGTCGA
65 GCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTGCGTGCTGTCGA
12091407 TCCTATTGTC
Statistics
Matches: 233, Mismatches: 46, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
157 104 0.45
158 6 0.03
159 119 0.51
160 4 0.02
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCTCGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTGCGTGCTGTCGAGCCC
GCTGCCACAACCCTCGGTTGGATCCGA
Found at i:12091724 original size:501 final size:500
Alignment explanation
Indices: 12090744--12091959 Score: 1384
Period size: 501 Copynumber: 2.4 Consensus size: 500
12090734 ACCGATCCTG
* * ** * *
12090744 CTGCCACAA-CGTCGGTCCGACGGGGGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTTCGAATGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * * * * *
12090808 CACGAAACGAGCGTGCGGGCACTCAGCCGATCGGAGAGACAGAATGCACTAGCCGGGGATCGACC
66 CATGAAACGACCGTGCAGGCACTCAGTCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACC
* * *
12090873 CGATCCCCCCTGCGTGCTACCGATCCTGCTGCTGGTCCTACTATTACAACCCTC-AGTCCGGTCC
131 CGATCCCCCTTGCGTGCTACCGATCCT--AG-T-G--C--C----GCAACCCTCGA-TCCGGTCC
*
12090937 GATCATAGACTGGGAAAT-AACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCA
183 GATCTTAGACTGGG-AATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCA
* * * * * * *
12091001 ACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGTCGGAGAAGCAGAATGCACAAGCCGGGGATCG
247 ACCCACGAAACGAGCGTGCGGGCACTCAACCGATCAGAGAAGCAGAATGCACAAGCCGAGGATCA
* * * ** *
12091066 GCCCGATCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTTTGATCCGATCTTAGACA
312 GCCCGATCCCCCTACGTACTGTCGATCCTGCTACCACAACCCTCGGTCCGATCCAATCTTAGACA
* * * * *
12091131 AGGAATGAACTCCGTGTGCCTAAGTCAACCCTCAAAACGAGCGTGCGGGCGCTGAGCCGACCGAA
377 AGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCATGCGAGCGCTGAGCCGACCGAA
* * * * * * *
12091196 GAGGTATAATGCGCAAGTCGGGGATCGGCCTGGTCCTCCTCTGCGTGCTGTCGG-CCGCG
442 GAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTATCGGTCC-CA
** *
12091255 CTGCCACAACCCTCGG-TCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCATC
1 CTGCCACAACCCTCGGTTC-GAATGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * * * *
12091319 CCATGAAACGACCGTGCAGGCGCTCAGTTGGCCGGAGAGGGAGAATGCGTAAGTCGGGGATCGGC
65 CCATGAAACGACCGTGCAGGCACTCAGTCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGAC
** * *
12091384 CCGATCCCCC-TGCGTGCTGTCGATCCTATTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTG
130 CCGATCCCCCTTGCGTGCTACCGATCCTAGTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTG
** * * * *
12091448 GGAATGAACTCTGTGTGCTTAGAC-TAGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACG
195 GGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACG
* * * * ** * *
12091512 AGTGTGCGGGCACTCAATCGATCAGAGAGGTAGAATGCGTAGGCCGAGGATCAGCTCGATCCCCC
259 AGCGTGCGGGCACTCAACCGATCAGAGAAGCAGAATGCACAAGCCGAGGATCAGCCCGAT-CCCC
* * *
12091577 ACTGCGTACTGTCGATGCTGCTACCACAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAAC
323 -CTACGTACTGTCGATCCTGCTACCACAACCCTCGGTCCGATCCAATCTTAGACAAGGAATGAAC
* * ** * *
12091642 TCCGTATGCATAAGTCAACCCACGAAATGAGCATGCGAGCGCTGAGTTGGCTGAAGAGGCATAAT
387 TCCGTATGCATAAGTCAACCCACAAAACGAGCATGCGAGCGCTGAGCCGACCGAAGAGGCATAAT
12091707 GCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTATCGGTCCCA
452 GCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTATCGGTCCCA
*
12091756 CTGCCAGAACCCTCGGTTCGAATGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTTCGAATGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * *
12091821 CATGAAATGAGCGTGCGGGCACTCAGTCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACC
66 CATGAAACGACCGTGCAGGCACTCAGTCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACC
* * * * *
12091886 TGGTCCCCCTTGCGTGCTACCGATCCTAGTGCCGTAACCCTCGATCCGATCTGATCTTAGACTGG
131 CGATCCCCCTTGCGTGCTACCGATCCTAGTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGG
*
12091951 CAATGAACT
196 GAATGAACT
12091960 TCGTATGCCT
Statistics
Matches: 593, Mismatches: 102, Indels: 29
0.82 0.14 0.04
Matches are distributed among these distances:
498 4 0.01
499 124 0.21
500 5 0.01
501 267 0.45
502 60 0.10
503 1 0.00
507 1 0.00
508 1 0.00
511 25 0.04
512 105 0.18
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (500 bp):
CTGCCACAACCCTCGGTTCGAATGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CATGAAACGACCGTGCAGGCACTCAGTCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACC
CGATCCCCCTTGCGTGCTACCGATCCTAGTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGG
GAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAG
CGTGCGGGCACTCAACCGATCAGAGAAGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCCTA
CGTACTGTCGATCCTGCTACCACAACCCTCGGTCCGATCCAATCTTAGACAAGGAATGAACTCCG
TATGCATAAGTCAACCCACAAAACGAGCATGCGAGCGCTGAGCCGACCGAAGAGGCATAATGCGC
AAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTATCGGTCCCA
Found at i:12091981 original size:158 final size:157
Alignment explanation
Indices: 12091465--12092283 Score: 616
Period size: 159 Copynumber: 5.2 Consensus size: 157
12091455 ACTCTGTGTG
* * * * * *
12091465 CTTAGACTAGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCACTCAAT
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGT
* * * * * * * * * *
12091530 CGATCAGAGAGGTAGAATGCGTAGGCCGAGGATC-AGCTCGATCCCCCACTGCGTACTGTCGATG
65 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCT-GATCCCCC-TTGCGTGCTATCGATC
* * * *
12091594 CT-GCTACCACAACCCTCGGTCCGATCCAAT
128 CTAG-TGCCGCAACCCTCGATCCGATCCGAT
* * * * *
12091624 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCATGCGAGCGCTGAGT
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGT
* * * * * * *
12091689 TG-GCTGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTATCGGTC
65 CGACCAG-AGAGGCAGAATGCGCAAGCCGGGGATCGACCTGATCCCCCT-TGCGTGCTATCGATC
* * * * * **
12091753 CCACTGCCAG-AACCCTCGGTTCGAAT-GGGG
128 CTAGTGCC-GCAACCCTCGATCCG-ATCCGAT
* * *
12091783 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGT
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGT
* *
12091848 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCTTGCGTGCTACCGATCCT
65 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGATCCCCCTTGCGTGCTATCGATCCT
* *
12091913 AGTGCCGTAACCCTCGATCCGATCTGAT
130 AGTGCCGCAACCCTCGATCCGATCCGAT
* * ** * *
12091941 CTTAGACTGGCAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGGGTGC-ATCGCTGAGC
1 CTTAGACTGG-AATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGT
** * * * * * * *
12092005 CGGTC-GAAGAGGCATAATGCACAAGTCGGGGATCG-GCTCAGTCCCCCTCTGTGTGCTATCGGT
65 CGACCAG-AGAGGCAGAATGCGCAAGCCGGGGATCGACCTGA-TCCCCCT-TGCGTGCTATCGAT
* * ** * * **
12092068 CCCACTGCCATAACACTCGATCCGA-CTGGGG
127 CCTAGTGCCGCAACCCTCGATCCGATC-CGAT
* * * * * *
12092099 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGTGCGTGCGGGCGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGT
* * * * * ** *
12092164 CGACCGGAGAGGTAGAATGCGTAAGCCGGAGATCGACCCGATCCACCC-TGCGTGCTGCCAAT-C
65 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGATCC-CCCTTGCGTGCTATCGATCC
* *
12092227 TTGCTGCCGCAATCCTCGATCCGATCCGAT
129 TAG-TGCCGCAACCCTCGATCCGATCCGAT
*
12092257 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
12092284 TTAGACTGGG
Statistics
Matches: 513, Mismatches: 124, Indels: 47
0.75 0.18 0.07
Matches are distributed among these distances:
156 3 0.01
157 49 0.10
158 205 0.40
159 244 0.48
160 12 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGTC
GACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGATCCCCCTTGCGTGCTATCGATCCTA
GTGCCGCAACCCTCGATCCGATCCGAT
Found at i:12092100 original size:316 final size:314
Alignment explanation
Indices: 12091464--12092283 Score: 1013
Period size: 316 Copynumber: 2.6 Consensus size: 314
12091454 AACTCTGTGT
* ** * *
12091464 GCTTAGAC-TAGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCACTCA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
* * * * * * *
12091528 ATCGATCAGAGAGGTAGAATGCGTAGGCCGAGGATC-AGCTCGATCCCCCACTGCGTACTGTCGA
65 GTCGACCAGAGAGGTAGAATGCGTAAGCCGGGGATCGACCT-GAT-CCCC-CTGCGTGCTGCCGA
* * * *
12091592 TGCTGCTACCACAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAACTCCGTATGCATAAGT
127 T-CTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACT-GGAATGAACTCCGTATGCATAAGT
** *
12091657 CAACCCACGAAATGAGCATGCGAGCGCTGAGTTGGCTGAAGAGGCATAATGCGCAAGCCGGGGAT
190 CAACCCACGAAATGAGCATGCGAGCGCTGAGCCGGCTGAAGAGGCATAATGCACAAGCCGGGGAT
* * * *
12091722 CGGCCCGATCCCCCTCTGCGTGCTATCGGTCCCACTGCCAGAACCCTCGGTTCGAATGGG
255 CGGCCAGATCCCCCTCTGCGTGCTATCGGTCCCACTGCCAGAACACTCGATCCGAATGGG
*
12091782 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * *
12091847 TCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCTTGCGTGCTACCGATCC
66 TCGACCAGAGAGGTAGAATGCGTAAGCCGGGGATCGACCTGATCCCCC-TGCGTGCTGCCGAT-C
* * * *
12091912 TAG-TGCCGTAACCCTCGATCCGATCTGATCTTAGACTGGCAATGAACTTCGTATGCCTAAGTCA
129 T-GCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGG-AATGAACTCCGTATGCATAAGTCA
* ** * *
12091976 ACCCATGAAATGAGGGTGC-ATCGCTGAGCCGG-TCGAAGAGGCATAATGCACAAGTCGGGGATC
192 ACCCACGAAATGAGCATGCGAGCGCTGAGCCGGCT-GAAGAGGCATAATGCACAAGCCGGGGATC
* * *
12092039 GGCTCAG-TCCCCCTCTGTGTGCTATCGGTCCCACTGCCATAACACTCGATCCGACTGGG
256 GGC-CAGATCCCCCTCTGCGTGCTATCGGTCCCACTGCCAGAACACTCGATCCGAATGGG
* * *
12092098 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGTGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * *
12092163 CCGACCGGAGAGGTAGAATGCGTAAGCCGGAGATCGACCCGATCCACCCTGCGTGCTGCCAATCT
66 TCGACCAGAGAGGTAGAATGCGTAAGCCGGGGATCGACCTGATCC-CCCTGCGTGCTGCCGATC-
* *
12092228 TGCTGCCGCAATCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGC
129 TGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACT-GGAATGAACTCCGTATGC
12092284 TTAGACTGGG
Statistics
Matches: 432, Mismatches: 59, Indels: 24
0.84 0.11 0.05
Matches are distributed among these distances:
315 3 0.01
316 246 0.57
317 90 0.21
318 89 0.21
319 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (314 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
TCGACCAGAGAGGTAGAATGCGTAAGCCGGGGATCGACCTGATCCCCCTGCGTGCTGCCGATCTG
CTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGAATGAACTCCGTATGCATAAGTCAACCC
ACGAAATGAGCATGCGAGCGCTGAGCCGGCTGAAGAGGCATAATGCACAAGCCGGGGATCGGCCA
GATCCCCCTCTGCGTGCTATCGGTCCCACTGCCAGAACACTCGATCCGAATGGG
Found at i:12093420 original size:159 final size:156
Alignment explanation
Indices: 12092997--12093489 Score: 433
Period size: 159 Copynumber: 3.1 Consensus size: 156
12092987 AACTCCGTAC
* * * * *
12092997 GCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAGACGAGCGTGCAGGCGCTCAA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACG-GAGTGCGGGCGCTCAG
*
12093062 TCGGTCGGAGAGGCAGAA--TGCACAGCCGGGGATCGGT-CGGTCCCCCCTGCGTGTTGTCGATC
64 TCGGTCGGAGAGGCAGAATGTGCA-AGCCGGGGATCGGTCCGGTCCCCCCTGCGTGCTGTCGATC
*** *
12093124 TTGCTGCCACAACCCTCAGTTCGGTCCAA
128 CCACTGCCACAACCCTCAGTCCGGTCCAA
* * * * * *
12093153 TCTTAGACTGGGAATTAACTCTGTATGCATAAG-TCAACCCACGAAACGAGAGTGCGAGCGCTGA
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCT-AACCCACGAAACG-GAGTGCGGGCGCTCA
* * * * * * ** *
12093217 GCCGATCGAAGAGGCATAATGGGCAAGCTGGGGATC-AACTCGGTCCCCTTCTGCGTGCTG-CTG
63 GTCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGTC-CGGTCCCC-CCTGCGTGCTGTC-G
* * ****
12093280 GTCCCACTTCCACAACCCTCAGTCCGGTTGGG
125 ATCCCACTGCCACAACCCTCAGTCCGGTCCAA
* *
12093312 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGGATGTGCGGGCACTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGGA-GTGCGGGCGCTCAG
* * *
12093377 TCGG-CTGGTGAGGCAGAATGTGCAAGCCGGGGATCGGTCCGGTCCCCCCTACGTGTTGTCGATC
64 TCGGTC-GGAGAGGCAGAATGTGCAAGCCGGGGATCGGTCCGGTCCCCCCTGCGTGCTGTCGATC
** * * * *
12093441 CTGCTGCCGCAACCCTCGGTCTGGTCTAA
128 CCACTGCCACAACCCTCAGTCCGGTCCAA
*
12093470 TCTTAGACTGTGAATGAACT
1 GCTTAGACTG-GAATGAACT
12093490 TCATATGCTT
Statistics
Matches: 259, Mismatches: 63, Indels: 28
0.74 0.18 0.08
Matches are distributed among these distances:
155 1 0.00
156 65 0.25
157 12 0.05
158 61 0.24
159 117 0.45
160 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (156 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGGAGTGCGGGCGCTCAGTC
GGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGTCCGGTCCCCCCTGCGTGCTGTCGATCCCA
CTGCCACAACCCTCAGTCCGGTCCAA
Found at i:12093512 original size:26 final size:26
Alignment explanation
Indices: 12093471--12093523 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12093461 CTGGTCTAAT
*
12093471 CTTAGACTGTGAATGAACTTCA-TATG
1 CTTAGACTGGGAATGAAC-TCAGTATG
*
12093497 CTTAGACTGGGGATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
12093523 C
1 C
12093524 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:12093890 original size:26 final size:26
Alignment explanation
Indices: 12093839--12093891 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12093829 CCGGTCCGAT
**
12093839 CTTAGAATGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCATATG
12093865 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGA-ATGGGAATGAACTCCATATG
12093891 C
1 C
12093892 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:12094165 original size:159 final size:158
Alignment explanation
Indices: 12093864--12094303 Score: 481
Period size: 159 Copynumber: 2.8 Consensus size: 158
12093854 AACTCTGTAT
* * * *
12093864 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGTGGGCGCTTAG
1 GCTTAAACATGAAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG
* * * *
12093929 TCGACCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGATCCCCCCCTGTGTGCTGTCGATC
66 CCGACCGGAGAGGCAAAATGCGCAAGCCGGGGACCGACCCGAT-CCCCCCTGCGTGCTGCCGATC
* * *
12093994 CTACCACTACAACCCTCGGTTTGGTCCA-A
130 CCACCACCACAACCCTCGGTCTGG-CCAGA
* * * * * *
12094023 TCTTAGAC-TAGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCACTGA
1 GCTTAAACAT-GAAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCA
* * * *
12094087 GCCGATCGGAGAGGCATAATGCGCAAGCCGGGGACCGACCCGGTCCCCCTCTGCGTGCTGCCGGT
65 GCCGACCGGAGAGGCAAAATGCGCAAGCCGGGGACCGACCCGATCCCCC-CTGCGTGCTGCCGAT
* ** * *
12094152 CCCGCTGCCACAACCCTCGGTCTGGCTAGG
129 CCCACCACCACAACCCTCGGTCTGGCCAGA
* * * * *
12094182 GCTTAAACATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAAC-AGGCGTGCGGTCGCTCA
1 GCTTAAACATGAAATGAACTCCATATGCCTAAGCCAACCCATGAAACGA-GCGTGTGGGCGCTCA
* * * * * *
12094246 ACCGGCCGGAGAGGCAAAACGCGCAAGCCGGGGATCGGCCCAATCCCCCCTGCGTGCT
65 GCCGACCGGAGAGGCAAAATGCGCAAGCCGGGGACCGACCCGATCCCCCCTGCGTGCT
12094304 ATCGATCTTG
Statistics
Matches: 235, Mismatches: 41, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
158 18 0.08
159 216 0.92
160 1 0.00
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (158 bp):
GCTTAAACATGAAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG
CCGACCGGAGAGGCAAAATGCGCAAGCCGGGGACCGACCCGATCCCCCCTGCGTGCTGCCGATCC
CACCACCACAACCCTCGGTCTGGCCAGA
Found at i:12094370 original size:26 final size:26
Alignment explanation
Indices: 12094341--12094393 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12094331 CCGATCTGAT
*
12094341 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
12094367 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
12094393 C
1 C
12094394 GTTTGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:12095450 original size:159 final size:158
Alignment explanation
Indices: 12095088--12095589 Score: 403
Period size: 158 Copynumber: 3.2 Consensus size: 158
12095078 ACTCCGTATG
* *
12095088 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTAAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTAAGC
* * * * * *
12095153 CGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCT
66 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGTCGATCCC
* * * **
12095218 GCTGCAGTAACTCTTGGTTTGATCCAAT
131 GCTGCAGCAACCCTCGGTCAGATCCAAT
* *
12095246 CTTAGAC-TGTGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCGCTAAG
1 CTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTAAG
* * * * *
12095310 CTGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCAGTCTCCCTCTACGTGCTG-CAGGT
65 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTC-CCCCCTACGTGCTGTC-GAT
* ****
12095374 CCCGCTGCCA-CAACCCTCGGTCCAGTTGGGGT
128 CCCGCTG-CAGCAACCCTCGGT-CAGATCCAAT
* * * *
12095406 -TTAGACATGGAATGAACTCCCTATACCTAAGCCAACCGACGAAACG-G-GTATGCGGGTGCTTA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTA--CGGGCGC-TA
* * * * * * ** * * * **
12095468 A-CCGGCTGGAGAGGCACATTGTGCAAGCCAAGGATCGGCCC-GATCCCTCCTGCGTGCTACCGA
63 AGCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAG-TCCCCCCTACGTGCTGTCGA
* * * * **
12095531 TCCTGCTGCCA-CAACCATCGGTCCGGTCTGAT
127 TCCCGCTG-CAGCAACCCTCGGTCAGATCCAAT
12095563 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
12095590 TTAGACTAGG
Statistics
Matches: 277, Mismatches: 54, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
157 11 0.04
158 149 0.54
159 107 0.39
160 10 0.04
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTAAGC
CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGTCGATCCC
GCTGCAGCAACCCTCGGTCAGATCCAAT
Found at i:12095592 original size:26 final size:26
Alignment explanation
Indices: 12095563--12095615 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12095553 CCGGTCTGAT
12095563 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
12095589 CTTAGACTAGGGATTAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
12095615 C
1 C
12095616 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:12095889 original size:26 final size:26
Alignment explanation
Indices: 12095860--12095912 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12095850 CCGGTTCGAT
12095860 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
12095886 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
12095912 C
1 C
12095913 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:12096905 original size:185 final size:185
Alignment explanation
Indices: 12096569--12096937 Score: 447
Period size: 185 Copynumber: 2.0 Consensus size: 185
12096559 TTCGACTGGG
* * * * * *
12096569 GCTTAGACATGGAATAAACTCCGTGTGGCTAAGCTAACCCACGAAACGAGCGAGCGGGCACTCAG
1 GCTTAGACATGGAATAAACTCCATATGCCCAAGCCAACCCACAAAACGAGCGAGCGGGCACTCAG
* * ***
12096634 CCGGCCGAAGAGGCAGAATGCACAAGCTAGGGGTCAGCCTGGTCCCCCCCTGCGTGCTACCGATC
66 CCGGCCGAAGAGGCAGAATGCACAAGCGAGGAGTCAGCCCAATCCCCCCCTGCGTGCTACCGATC
* ** *
12096699 TTGCTACCGTAACCTTCGGTCC-GACACGATCTTAGACTAGGAATGAACTCCGTAC
131 CTGCTACCACAACCCTCGGTCCAGAC-CGATCTTAGACTAGGAATGAACTCCGTAC
* * *
12096754 GCTTAGACATGGAATGAACTCCATATGCCCAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATAAACTCCATATGCCCAAGCCAACCCACAAAACGAGCGAGCGGGCACTCAG
* * * * * *
12096819 CCGGTCGGAA-AGGCAGAATGCACAAGTCGAGGATTGA-CCCAATCTCCCCTTGCGTGCTATCGA
66 CCGG-CCGAAGAGGCAGAATGCACAAG-CGAGGAGTCAGCCCAATCCCCCCCTGCGTGCTACCGA
* * *
12096882 TCCTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTA
129 TCCTGCTACCACAACCCTCGGTCCAGACCGATCTTAGACTAGGAATGAACTCCGTA
12096938 TGCCTAAGTC
Statistics
Matches: 154, Mismatches: 27, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
185 142 0.92
186 12 0.08
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.18
Consensus pattern (185 bp):
GCTTAGACATGGAATAAACTCCATATGCCCAAGCCAACCCACAAAACGAGCGAGCGGGCACTCAG
CCGGCCGAAGAGGCAGAATGCACAAGCGAGGAGTCAGCCCAATCCCCCCCTGCGTGCTACCGATC
CTGCTACCACAACCCTCGGTCCAGACCGATCTTAGACTAGGAATGAACTCCGTAC
Found at i:12097147 original size:158 final size:158
Alignment explanation
Indices: 12096754--12097380 Score: 650
Period size: 158 Copynumber: 4.0 Consensus size: 158
12096744 AACTCCGTAC
* * *
12096754 GCTTAGACATGGAATGAACTCCATATGCCCAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
* * * * * * *
12096819 CCGGTCGGAAAGGCAGAATGCACAAGTCGAGGATTGACCCAATCTCCCCTTGCGTGCTATCGATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATC-CCCCTTGCATGCTGTCGATC
* *
12096884 CTGCTGCCACAACCCTCGGTCCAG-TCCGA
130 CCGCTGCCACAACCCTCGGTCCAGCT-GGA
* * * * * * *
12096913 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCA
* * * * * * * *
12096977 GCTGGCCAGAGAGGCATAATACGCAAGTCGAGGATCGGCCCGATCCACCTTTACATGCTGTCGGT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCC-CCCTTGCATGCTGTCGAT
12097042 CCCGCTGCCACAACCCTCGGTCCAGCTGGA
129 CCCGCTGCCACAACCCTCGGTCCAGCTGGA
* * * * * * *
12097072 GCTTACACATGG-ATAAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCGTGTGGGCAATCAT
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
* * * * *
12097136 CCGATCGGAGAGGCAGAATGCGTAAG-CCAGGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGTCGA-GGATCGGCCCGATCCCCCTTGCATGCTGTCGATC
* * *
12097200 CCGCTGCCACAACCCTCAGTCCGGCTGGG
130 CCGCTGCCACAACCCTCGGTCCAGCTGGA
* * * * *
12097229 GCTTAGACATGGAATGAACTCCCGATGCGTAAGCCAACCCACGAAACGGGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
* * * * * * **
12097294 CCGGTCGGAGACGCAGAATGCGCAAGTTGAGAATCGGCCTGGTCCCCCCTGTGTGCTGTCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTTGCATGCTGTCGATCC
** * *
12097359 TACTGTCGCAACCCTCGGTCCA
131 CGCTGCCACAACCCTCGGTCCA
12097381 ATCCGATCTT
Statistics
Matches: 384, Mismatches: 77, Indels: 15
0.81 0.16 0.03
Matches are distributed among these distances:
157 54 0.14
158 190 0.49
159 138 0.36
160 2 0.01
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTTGCATGCTGTCGATCC
CGCTGCCACAACCCTCGGTCCAGCTGGA
Done.