Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 79 of 402
Found at i:12097852 original size:158 final size:158
Alignment explanation
Indices: 12097558--12098100 Score: 479
Period size: 158 Copynumber: 3.4 Consensus size: 158
12097548 TGTCGATCCC
* * * * * ** * *
12097558 GCTGTCGGTCCTTCTACCACAACCCTCGGTCT-GACTGGGGCTTAGGCTTGGAATGAACTCCGTA
1 GCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTA
* * * * * * * *
12097622 TGCCTAAGCCAACCCATGAAACGAGCCTGTGGGCGCTCAGCCGGCTGGAAAGGCAGAATGCGCAT
65 TGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAA
* *
12097687 G-TCGGGGATCGACCCGGTCCCCCCTGCAT
130 GCT-GGGGATCGGCTCGGTCCCCCCTGCAT
* *
12097716 GCTGTCGATCCTACTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
1 GCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * * *
12097781 GCCTAAGTCAACCCACGAAACAAGCGTGCGGGGGTTGAGCCGATCGGAGAGGCATAATGCACAAG
66 GCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAG
*
12097846 CTGGGGATCGGCTCGATCCCCCTCTGCAT
131 CTGGGGATCGGCTCGGTCCCCC-CTGCAT
* * * ** ***
12097875 GCTGCCTG-T-CTCGCTGCCACAACCCTTGGT-TCGG-CTGGGGCTTAGACAAAGAATGAACTCT
1 GCTGTC-GATCCT-GCTGCCGCAACCCTCGGTCT-GGTCT-GATCTTAGACTGGGAATGAACTC-
* * * * * *
12097936 C-TATGACTAAGCCAACCCGTGAAACAGGCGTACGGGCGCTCAACCGACCGGAGTGGCAGAATGC
61 CGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGC
** * * * *
12098000 ACAAGCCAGAGATTGGCTTGGTCCCCCCTGCGT
126 ACAAGCTGGGGATCGGCTCGGTCCCCCCTGCAT
* * * *
12098033 GATGTCGATCCTGTTGCCGTAACCCTCGGTCTGGTCTGATCTTAGATTTGGGAATGAACTCCGTA
1 GCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGA-CTGGGAATGAACTCCGTA
12098098 TGC
65 TGC
12098101 TTAGACTGGG
Statistics
Matches: 300, Mismatches: 71, Indels: 27
0.75 0.18 0.07
Matches are distributed among these distances:
157 1 0.00
158 157 0.52
159 140 0.47
160 2 0.01
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
GCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAG
CTGGGGATCGGCTCGGTCCCCCCTGCAT
Found at i:12104761 original size:26 final size:26
Alignment explanation
Indices: 12104723--12104775 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
12104713 GGCTCAAAAT
12104723 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
12104749 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
12104775 C
1 C
12104776 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:12105911 original size:158 final size:158
Alignment explanation
Indices: 12105407--12106217 Score: 770
Period size: 158 Copynumber: 5.1 Consensus size: 158
12105397 CCGACTGGGG
* * * * * * **
12105407 CTTAGACATGGAATAAACTCTGTATGCCCAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAAT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * *
12105472 CGA-CCGAGAGGCAGAATGCGCAAGCC-GTGAATC-AGCCCGATCCCCCCTACGTACTGTCAATC
66 CGATCGGAGAGGCAGAATGCGCAAGCCAG-GGATCGA-CCCGATCCCCCCTGCGTGCTGTCGATC
* * **
12105534 CTACTGCTACAACCCTCGGTCCGGTCCGAT
129 CTGCTGCTACAACCCTCGGTCCGATCTAAT
* * * * * * *
12105564 CTTAGAC-TGGAATGAACTTCGTATGCCCAAG-TCAACCCACAAAATGAGTGTGCAGGCGTTGAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCT-AACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * *
12105627 CCG-GCTGGAGAGGCATAGTGCGCAAGCCAGGGATCGACCCGATCCCTCACTGCGTGCTG-CTGG
65 CCGATC-GGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCC-CCCTGCGTGCTGTC-GA
* * * * * **
12105690 TCTTGCTGCCACAACCCTCAGTCTG-GCTAGGG
127 TCCTGCTGCTACAACCCTCGGTCCGATCTA-AT
* * *
12105722 CTTAGACATGGAATGATCTCCGTATGCCTAAGCTAACCCACGAAATGAGCATGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * *
12105787 CGATCGGAGAGGGAAAATGAGCAAGCCAGGGATCGACCC-AGTCCCCCCTGCGTGCTGTCGATCC
66 CGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGA-TCCCCCCTGCGTGCTGTCGATCC
* * *
12105851 TACTGCTGCAACCCTCGATCCGATCTAAT
130 TGCTGCTACAACCCTCGGTCCGATCTAAT
* * *
12105880 CTTAGAC-TGGGAATGAACTCCGTATGACTAAG-TCAACCCACGAAATGAGCGTGCGGGCACTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * *
12105943 GCCGATCGGAGAGGCATAATGCACAAGCCGGGGAT-TAGCCCGATCCCCCTCTGCATGCTGTCGG
64 GCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGA-CCCGATCCCCC-CTGCGTGCTGTCGA
* * **
12106007 TCCCGCTGCCACAACCCTCGGTCCGA-CTAGGG
127 TCCTGCTGCTACAACCCTCGGTCCGATCTA-AT
* * *
12106039 CTTAGACATGGAATGAACTGCC-TATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAG
1 CTTAGACATGGAATGAACT-CCGTATGCCTAAGCTAACCCACGAAATGAGCGTGCGGGCGCTCAG
** * * * *
12106103 CCGGCCGAAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGATCCCCCTTGCGTGCTGCCGATCC
65 CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
*
12106168 TGCTGCTGCAACCCTCGGTCCGATCTAAT
130 TGCTGCTACAACCCTCGGTCCGATCTAAT
12106197 CTTAGAC-TGGGAATGAACTCC
1 CTTAGACAT-GGAATGAACTCC
12106218 ATTTGCTTAG
Statistics
Matches: 527, Mismatches: 101, Indels: 52
0.77 0.15 0.08
Matches are distributed among these distances:
156 46 0.09
157 47 0.09
158 214 0.41
159 214 0.41
160 6 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTGCTACAACCCTCGGTCCGATCTAAT
Found at i:12105988 original size:317 final size:316
Alignment explanation
Indices: 12105396--12106217 Score: 1030
Period size: 317 Copynumber: 2.6 Consensus size: 316
12105386 TAACTTTCGA
* * * * * *
12105396 TCCGACTGGGGCTTAGACATGGAATAAACTCTGTATGCCCAAGCCAACCCACGAAACGAGCGTGT
1 TCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGC
* * * *
12105461 GGGCGCTCAATCGACCGAGAGGCAGAATGCGCAAGCC-GTGAATC-AGCCCGATCCCCCCTACGT
66 GGGCGCTCAGTCGACGGAGAGGCAGAATGCGCAAGCCAG-GGATCGA-CCCGATCCCCCCTGCGT
* * * * ** *
12105524 ACTGTCAATCCTACTGCTACAACCCTCGGTCCGGTCCGATCTTAGACT-GGAATGAACTTCGTAT
129 GCTGTCGATCCTACTGCTGCAACCCTCGGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTAT
* * ** * *
12105588 GCCCAAGTCAACCCACAAAATGAGTGTGCAGGCGTTGAGCCGGCTGGAGAGGCATAGTGCGCAAG
194 GACCAAGTCAACCCACAAAATGAGCGTGCAGGCACTGAGCCGGCTGGAGAGGCATAATGCACAAG
* * * **
12105653 CCAGGGATCGACCCGATCCCTCACTGCGTGCTG-CTGGTCTTGCTGCCACAACCCTCAG
259 CCAGGGATAGACCCGATCCCCCACTGCATGCTGTC-GGTCCCGCTGCCACAACCCTCAG
* * * * *
12105711 TCTGGCTAGGGCTTAGACATGGAATGATCTCCGTATGCCTAAGCTAACCCACGAAATGAGCATGC
1 TCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGC
* * *
12105776 GGGCGCTCAGTCGATCGGAGAGGGAAAATGAGCAAGCCAGGGATCGACCC-AGTCCCCCCTGCGT
66 GGGCGCTCAGTCGA-CGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGA-TCCCCCCTGCGT
*
12105840 GCTGTCGATCCTACTGCTGCAACCCTCGATCCGATCTAATCTTAGACTGGGAATGAACTCCGTAT
129 GCTGTCGATCCTACTGCTGCAACCCTCGGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTAT
* * * *
12105905 GACTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCC-GATCGGAGAGGCATAATGCACAA
194 GACCAAGTCAACCCACAAAATGAGCGTGCAGGCACTGAGCCGGCT-GGAGAGGCATAATGCACAA
* * *
12105969 GCCGGGGATTAG-CCCGATCCCCCTCTGCATGCTGTCGGTCCCGCTGCCACAACCCTCGG
258 GCCAGGGA-TAGACCCGATCCCCCACTGCATGCTGTCGGTCCCGCTGCCACAACCCTCAG
*
12106028 TCCGACTAGGGCTTAGACATGGAATGAACTGCC-TATGCCTAAGCCAACCCACGAAATGGGCGTG
1 TCCGACTAGGGCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACCCACGAAATGAGCGTG
* * * * * *
12106092 CGGGCACTCAGCCGGCCGAAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGATCCCCCTTGCGT
65 CGGGCGCTCAGTC-GACGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGT
* *
12106157 GCTGCCGATCCTGCTGCTGCAACCCTCGGTCCGATCTAATCTTAGACTGGGAATGAACTCC
129 GCTGTCGATCCTACTGCTGCAACCCTCGGTCCGATCTAATCTTAGACTGGGAATGAACTCC
12106218 ATTTGCTTAG
Statistics
Matches: 434, Mismatches: 62, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
315 68 0.16
316 80 0.18
317 279 0.64
318 7 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (316 bp):
TCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGC
GGGCGCTCAGTCGACGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGC
TGTCGATCCTACTGCTGCAACCCTCGGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGA
CCAAGTCAACCCACAAAATGAGCGTGCAGGCACTGAGCCGGCTGGAGAGGCATAATGCACAAGCC
AGGGATAGACCCGATCCCCCACTGCATGCTGTCGGTCCCGCTGCCACAACCCTCAG
Found at i:12106849 original size:11 final size:11
Alignment explanation
Indices: 12106829--12106861 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
12106819 CGGTTAGGCT
12106829 CTCCGGCGATG
1 CTCCGGCGATG
*
12106840 CTCCGACGATG
1 CTCCGGCGATG
12106851 CTCCGGCGATG
1 CTCCGGCGATG
12106862 GTGCCCTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.12, C:0.36, G:0.33, T:0.18
Consensus pattern (11 bp):
CTCCGGCGATG
Found at i:12107311 original size:26 final size:26
Alignment explanation
Indices: 12107275--12107327 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12107265 TCGGTCTGAT
*
12107275 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12107301 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12107327 C
1 C
12107328 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12107765 original size:158 final size:157
Alignment explanation
Indices: 12107579--12108002 Score: 410
Period size: 158 Copynumber: 2.7 Consensus size: 157
12107569 CTTAGTTGGT
* *
12107579 CGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCCTACGTGCTGTCGATCCTGCTG
1 CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTACATGCTGTCGATCCTGCTG
* * * *
12107644 CCACTACCCTCGGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGACTAAGTCGACCCAT
66 CCACTACCCTCGGTTCGGTCTGATCTTAGACTAGGAATGAACTCCCTATGACTAAGCCAACCCAC
* *
12107709 GAAACGG-CTGTGCGGACAT-TGAGCCAAC
131 GAAACGGAC-GTGC-GA-ATCTCAACCAAC
* * * * *
12107737 CGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTG-CCAGTCCCGCT
1 CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTACATGCTGTCGA-TCCTGCT
* * * ** * *
12107801 GCCACAACCCTCGG-TCCGACTGGGGCATAGACATA-GAATGAACTCCCTATGCCTAAGCCAACC
65 GCCACTACCCTCGGTTCGGTCT-GATCTTAGAC-TAGGAATGAACTCCCTATGACTAAGCCAACC
* * *
12107864 TACGAAACGGACGTGCGAGTGCTCAACCGAC
128 CACGAAACGGACGTGCGAAT-CTCAACCAAC
* * * * * * * * *
12107895 CAGAGAGGTAGAATGTGAAAGCTGAGGATCGGCTCGGTCTCCCTTACATGCTGTCGATCCTGCTA
1 CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTACATGCTGTCGATCCTGCTG
* * * *
12107960 TC-GTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT
66 CCACT-ACCCTCGGTTCGGTCTGATCTTAGACTAGGAATGAACT
12108003 TTGTATGCTT
Statistics
Matches: 209, Mismatches: 47, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 10 0.05
158 189 0.90
159 9 0.04
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTACATGCTGTCGATCCTGCTG
CCACTACCCTCGGTTCGGTCTGATCTTAGACTAGGAATGAACTCCCTATGACTAAGCCAACCCAC
GAAACGGACGTGCGAATCTCAACCAAC
Found at i:12108404 original size:502 final size:500
Alignment explanation
Indices: 12107464--12108603 Score: 1500
Period size: 502 Copynumber: 2.3 Consensus size: 500
12107454 CTACTGTCGC
* * * * * *
12107464 AACCCTCGATCTGATCCGTTCTTAGGCTGGGAATGAACTCCGTATGCTTAGACATGGTATGAACT
1 AACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
* * * * ** **
12107529 CCGTATGCCTAAGGCAACCCATGAAACGAACGTACGGGCACTTAGTTGGTCGGAGAGGCAGAATG
66 CCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATG
* * * * * ** *
12107594 CGCAAGCCAGGGATCGGCTCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCACTACCCTCGGTT
131 CGTAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTACCACTACCCTCAATC
* * * * * *
12107659 CGGTCTGATCTTAGACTAGGAATGAACTCCGTATGACTAAGTCGACCCATGAAACGGCTGTGCGG
196 CAGTCTAATCTTAGACTAGGAATGAACTCCGTATCACTAAGTCAACCCACGAAACGGCTGTACGG
* * * * * * **
12107724 ACATTGAGCCAACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCT
261 ACACTGAGCCAACCGAAGAAGCATAATGCACAAGCCAGAGATCAACCCGGTCCCCCCTGCATGCT
*
12107789 GCCAGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCATAGACATAGAATGAACTCCCTATGCC
326 GCCAGTCCCACTGCCACAACCCTCGGTCCGACTGGGGCATAGACATAGAATGAACTCCCTATGCC
* *
12107854 TAAGCCAACCTACGAAACGGACGTGCGAGTGCTCAACCGACCAGAGAGGTAGAATGTGAAAGCTG
391 TAAGCCAACCCACGAAACGGACGTGCGAATGCTCAACCGACCAGAGAGGTAGAATGTGAAAGCTG
*
12107919 AGGATCGGCTCGGTCTCCCTTACATGCTGTCGATCCTGCTATCGT
456 AGGATCGGCTCGGTCTCCCTTACATGCTGTCGATCCTGCTATCAT
* **
12107964 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACATGGAATGAACT
1 AACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
** * *
12108029 CCAAATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAAAGGCAGAATG
66 CCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATG
* * * ** * *
12108094 CGTAAGTCGGGGATCGACCCGATCCTCTCCTGTGTGCTGTCGATCCTGCTATC-GTAACCCTCAA
131 CGTAAGCCAGGGATCGACCCGATCC-CCCCTACGTGCTGTCGATCCTGCTACCACT-ACCCTCAA
*
12108158 TCCAGTCTAATCTTAGACT-GAGAATGATCTCCGTATC-CATAAGTCAACCCACGAAACGAGC-G
194 TCCAGTCTAATCTTAGACTAG-GAATGAACTCCGTATCAC-TAAGTCAACCCACGAAACG-GCTG
* ** *
12108220 TACGGGCACTGAGCTGATCGAAGAAGCATAATGCACAAGCCAGAGATCAACCCGGTCCCCCTCTG
256 TACGGACACTGAGCCAACCGAAGAAGCATAATGCACAAGCCAGAGATCAACCCGGTCCCCC-CTG
* * * * * *
12108285 CGTGCTGTCGGTCCCACTGCCACAACCCTCGGTCC-AGCTGGGGCTTAGACATGGAATGAACTCT
320 CATGCTGCCAGTCCCACTGCCACAACCCTCGGTCCGA-CTGGGGCATAGACATAGAATGAACTCC
*
12108349 CTATGCCTAAGCCAACCCACGAAACGGGCGTGCGAATGCTCAACCGACCAGAGAGGTAGAATGTG
384 CTATGCCTAAGCCAACCCACGAAACGGACGTGCGAATGCTCAACCGACCAGAGAGGTAGAATGTG
12108414 AAAGCTGAGGATCGGCTCGGTCTCCCTTACATGCTGTCGATCCTGCTATCAT
449 AAAGCTGAGGATCGGCTCGGTCTCCCTTACATGCTGTCGATCCTGCTATCAT
*
12108466 AACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-ATGGGGATGAAC
1 AACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAAC
* * * * * * *
12108530 TCCGTATGCCTAAGTCAACCCATGAAATGAGCGCATGGACGCTCAGCCGACCAGAGAGGCAGGAT
65 TCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAAT
12108595 GCGTAAGCC
130 GCGTAAGCC
12108604 GGAGAGGCCG
Statistics
Matches: 550, Mismatches: 82, Indels: 14
0.85 0.13 0.02
Matches are distributed among these distances:
500 131 0.24
501 127 0.23
502 292 0.53
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (500 bp):
AACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
CCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATG
CGTAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTACCACTACCCTCAATC
CAGTCTAATCTTAGACTAGGAATGAACTCCGTATCACTAAGTCAACCCACGAAACGGCTGTACGG
ACACTGAGCCAACCGAAGAAGCATAATGCACAAGCCAGAGATCAACCCGGTCCCCCCTGCATGCT
GCCAGTCCCACTGCCACAACCCTCGGTCCGACTGGGGCATAGACATAGAATGAACTCCCTATGCC
TAAGCCAACCCACGAAACGGACGTGCGAATGCTCAACCGACCAGAGAGGTAGAATGTGAAAGCTG
AGGATCGGCTCGGTCTCCCTTACATGCTGTCGATCCTGCTATCAT
Found at i:12108515 original size:26 final size:26
Alignment explanation
Indices: 12108486--12108538 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12108476 CCGGTCTGAT
*
12108486 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
12108512 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
12108538 C
1 C
12108539 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:12108615 original size:9 final size:9
Alignment explanation
Indices: 12108601--12108628 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
12108591 GGATGCGTAA
12108601 GCCGGAGAG
1 GCCGGAGAG
12108610 GCCGGAGAG
1 GCCGGAGAG
12108619 GCCGGAGAG
1 GCCGGAGAG
12108628 G
1 G
12108629 AATAATGCGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.21, G:0.57, T:0.00
Consensus pattern (9 bp):
GCCGGAGAG
Found at i:12108924 original size:26 final size:26
Alignment explanation
Indices: 12108895--12108947 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12108885 CCGAGGTGAT
12108895 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
12108921 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
12108947 C
1 C
12108948 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:12109315 original size:159 final size:159
Alignment explanation
Indices: 12108920--12109365 Score: 427
Period size: 159 Copynumber: 2.8 Consensus size: 159
12108910 AACTCCGTAT
* *
12108920 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
* * * * * * * * * *
12108985 TCGATC-AGAGACGCAGAATGCACAAGCTGGGGACCGACCCGAT-CCCCTCCTACGTTCTATCGA
66 TCGACCGA-AGAGGCAGAATGCGCAAGCCGGAGATCAACCCGATCCCCCT-CTGCGTACTGTCGA
* *** *
12109048 TCCTACTATTGCAACCCTTGGTCCGGTCCGA
129 TCCCACTACCACAACCCTCGGTCCGGTCCGA
* * * * * * *
12109079 TCATAGA-ATGGGAATGAACTCTGTATGCCTACGTCAACCCACAAAATGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCA
* * * * * *
12109143 GCCAACCTG-AGAGGCATAATGCGTAAGCCGGAGATCAACCCGATCCCCCTTTGCGTACTGTCGG
65 GTCGACC-GAAGAGGCAGAATGCGCAAGCCGGAGATCAACCCGATCCCCCTCTGCGTACTGTCGA
* * ** *
12109207 TCCCGCTGCCACAACCCTCGGTCCGGTTGGG
129 TCCCACTACCACAACCCTCGGTCCGGTCCGA
* * *
12109238 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
* * * *
12109303 TCGGCCGAAGAGGCAGAATGCGCAAGCC-AAGGATTAACCCGATCCCCC-CTGCGTGCTGTCGAT
66 TCGACCGAAGAGGCAGAATGCGCAAGCCGGA-GATCAACCCGATCCCCCTCTGCGTACTGTCGAT
12109366 TCTACTGTAG
Statistics
Matches: 225, Mismatches: 55, Indels: 15
0.76 0.19 0.05
Matches are distributed among these distances:
158 16 0.07
159 202 0.90
160 7 0.03
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
TCGACCGAAGAGGCAGAATGCGCAAGCCGGAGATCAACCCGATCCCCCTCTGCGTACTGTCGATC
CCACTACCACAACCCTCGGTCCGGTCCGA
Found at i:12109634 original size:26 final size:26
Alignment explanation
Indices: 12109596--12109645 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
12109586 AACCCTCGAT
*
12109596 CTTAGACTGGGAATGAACTTCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
12109622 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
12109646 TGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:12110171 original size:159 final size:158
Alignment explanation
Indices: 12109621--12110280 Score: 505
Period size: 159 Copynumber: 4.2 Consensus size: 158
12109611 AACTTCGTAC
* *
12109621 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * ** * * * * *
12109685 GCCAATCGAAAAGGCAGAATGCGCAAGTCGGGGATC-GACTCGGTCCCCC-CTGCATGCTATCAA
65 GCCGACCGAAAAGGCAGAATGCGCAAGCCAAGGATCAG-CCCGATCCCCCTCTGCGTGCTACCGA
* * * *
12109748 TCCTACTGTCGCAACCCTCGGTCCAGTCCGA
129 TCCTACTGCCACAACCCTCGATCCAG-CTGA
* * * * * * *
12109779 TCTTAGACTGGGAATGAACAT-TGTATGCATAAGTCAACCCATGAAACGAGCGTCCAGGTGCTCA
1 GCTTAGACTGGGAATGAAC-TCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * *
12109843 GCCAGTCAG-AGAGGCAGAATACGTAAGCTAAGGATCCGCTCTG-TTCCCCTCTGCAGT-CTACC
65 GCC-GACCGAAAAGGCAGAATGCGCAAGCCAAGGATCAGC-CCGATCCCCCTCTGC-GTGCTACC
* **
12109905 GATCCTGCTGCCACAACCCTCGATCTGGCCTGA
127 GATCCTACTGCCACAACCCTCGATCCAG-CTGA
* * ** * * * *
12109938 TCTTAGACTGGGAATGAACTCCGTATGCATATGTAAACCCATGAAACGAGCATGCGGGTGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * *
12110003 CCGGTCGAAAAGGCATAATGCGTAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTACCGGTC
66 CCGACCGAAAAGGCAGAATGCGCAAGCCAAGGATCAGCCCGATCCCCCTCTGCGTGCTACCGATC
* *
12110068 CTATTGCCACAACCCTCGATCCAGCTAGG
131 CTACTGCCACAACCCTCGATCCAGCT-GA
* * * *
12110097 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCCCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
12110161 ACCGACCGAAAAGGTAGAATGCACAAGTCAAGCATCAGCTCGAT-CCCCTCTGCGTGCTACAGAT
65 GCCGACCGAAAAGGCAGAATGCGCAAGCCAAGGATCAGCCCGATCCCCCTCTGCGTGCTACCGAT
* * * * * * *
12110225 TCT-GTGTCGCAA-GCTCGATCCATTCCGA
130 CCTACTGCCACAACCCTCGATCCA-GCTGA
* *
12110253 TCTTAGGCTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
12110281 TTAGAATGGG
Statistics
Matches: 393, Mismatches: 94, Indels: 32
0.76 0.18 0.06
Matches are distributed among these distances:
155 1 0.00
156 33 0.08
157 8 0.02
158 109 0.28
159 240 0.61
160 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGAAAAGGCAGAATGCGCAAGCCAAGGATCAGCCCGATCCCCCTCTGCGTGCTACCGATC
CTACTGCCACAACCCTCGATCCAGCTGA
Found at i:12110782 original size:159 final size:157
Alignment explanation
Indices: 12110530--12110881 Score: 365
Period size: 159 Copynumber: 2.2 Consensus size: 157
12110520 AGTCGGTTGG
* * * * * *
12110530 AGAGGTAGAATGCACAAGTCGGGGATCGGCCCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTGCT
1 AGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCCTACGTGCTATCGATCCCGCTGCC
* * * *
12110595 GCAACCTTCGATTTGGTCTGATCATAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCCACG
66 ACAACCTTC-ATTTGGTCTGATCATAGACAT-GGAATGAACTCCATATGC-CAAGCCAACCCAAG
* * *
12110659 AAA-TGAGCGTGTGGGCGTTGAGCCGACCAA
128 AAACGGA-CGTGTGGGCGCTCAGCCGACCAA
* * * * *
12110689 AGAGGCATAATTCACAAGCCGGGGATCGGCCCGGTCCCCCTCTATGTGCTATCGATCCCGTTGCC
1 AGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCCTACGTGCTATCGATCCCGCTGCC
* *
12110754 ACAACCCTT-ATTTCGG-CTAGGA-CTTAGACATGGAATGAACTCCTTATGCCAAGCCAACCCAA
66 ACAA-CCTTCATTT-GGTCT--GATCATAGACATGGAATGAACTCCATATGCCAAGCCAACCCAA
** *
12110816 GAAACGGACGTGTGGGCGCTCAGCCGGTCAG
127 GAAACGGACGTGTGGGCGCTCAGCCGACCAA
**
12110847 AGAGGCAGAATGCGTAAGCC-GGGATCGGCCCGGTC
1 AGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTC
12110882 TGCCCCGTAT
Statistics
Matches: 160, Mismatches: 27, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
157 15 0.09
158 54 0.34
159 84 0.52
160 7 0.04
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (157 bp):
AGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCCTACGTGCTATCGATCCCGCTGCC
ACAACCTTCATTTGGTCTGATCATAGACATGGAATGAACTCCATATGCCAAGCCAACCCAAGAAA
CGGACGTGTGGGCGCTCAGCCGACCAA
Found at i:12111354 original size:26 final size:26
Alignment explanation
Indices: 12111303--12111355 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12111293 CCGGTCTGAT
*
12111303 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
12111329 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12111355 C
1 C
12111356 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12111577 original size:209 final size:213
Alignment explanation
Indices: 12111200--12111614 Score: 475
Period size: 209 Copynumber: 2.0 Consensus size: 213
12111190 AGCCGGTTGG
* * * * * *
12111200 AGAGGTAGAATGCGTAAGTCGAGGATCAGCCCGGTCCCCTCCTACGTGTTACCGATCTTGCGTGC
1 AGAGGTAGAATGCGCAAGTCGAGGATCAGCCCGATCCCCTCCTACGTGCTACCAACCCTGCGTGC
* * * * * * * *
12111265 TGTCGATCCTGCTATCGTAACCCTTAATCCGGTCTGATCTTAGACTGGGAATGAACTTCATATGC
66 TG-CGATCCTGCTACCGTAACCCTCAATCCAGTCCGATCTAAGAATAGGAATGAACTCCATATGC
* * * * * * **
12111330 TTAGACTGGGGATGAACTCCGTATGCCTAGGTCAACCCATGAAATGAGCGTATGGGCGTTCAGCT
130 ATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTATGGGCACTCAGCT
* *
12111395 GACCGGAGAGGACGACAGA
195 AACCGAAGAGGACGACAGA
* *
12111414 AGAGGTAGAATGCGCAAGTCGGGGATC-GACCCGATCCCC-CCTACGTGCTGCCAACCCTGC-TG
1 AGAGGTAGAATGCGCAAGTCGAGGATCAG-CCCGATCCCCTCCTACGTGCTACCAACCCTGCGTG
* *
12111476 CTG-G-TCCTGCTACCGCT-ACCCTCAGTCCAGTCCGATCTAAGAATAGGAATGAACTCCGTATG
65 CTGCGATCCTGCTACCG-TAACCCTCAATCCAGTCCGATCTAAGAATAGGAATGAACTCCATATG
* *
12111538 CATAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAG
129 CATAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTATGGGCACTCAG
12111602 CTAACCGAAGAGG
193 CTAACCGAAGAGG
12111615 TAGAATGAGT
Statistics
Matches: 168, Mismatches: 30, Indels: 11
0.80 0.14 0.05
Matches are distributed among these distances:
209 109 0.65
210 3 0.02
212 5 0.03
213 17 0.10
214 34 0.20
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (213 bp):
AGAGGTAGAATGCGCAAGTCGAGGATCAGCCCGATCCCCTCCTACGTGCTACCAACCCTGCGTGC
TGCGATCCTGCTACCGTAACCCTCAATCCAGTCCGATCTAAGAATAGGAATGAACTCCATATGCA
TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTATGGGCACTCAGCTA
ACCGAAGAGGACGACAGA
Found at i:12112061 original size:370 final size:370
Alignment explanation
Indices: 12111535--12112257 Score: 915
Period size: 370 Copynumber: 2.0 Consensus size: 370
12111525 TGAACTCCGT
*
12111535 ATGCATAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTC
1 ATGCATAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTC
* * * * * * *
12111600 AGCTAACCGAAGAGGTAGAATGAGTAAACCGAGGACCGGCCTGGTCCCTCTTACGTGCTATCGAT
66 AGCCAACCGAAAAGGTAGAATGAGCAAACCGAGGACCGACCCGGTCCCTCCTACGTGCTATCAAT
* * * *
12111665 CTTACTGTCGCAACCCTTGGTCCAGTCCAATCTTAGACTGGGAATGAACACCGTATGCATAAGTC
131 CCTACTGCCGCAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACACCGTATGCATAAGTC
* *
12111730 AACCCACGAAACGAGCGT-TCGGGTG-CTAAGTCGACC-AGAGAGGCATAATGCGCAAG-TAGAG
196 AACCCACGAAACGAGCGTGT-GGGTGCCGAACT-GACCGA-AGAGGCATAATGCGCAAGCT-GAG
* * * *
12111791 GATCGGCCCGATCCCCTTTTGC-GTGCTG-TCGATCCCACTACCACAACCCTCGATCTGACTGGG
257 GATCAGCCCGATCCCCCTGT-CTGTGCTGCT-GATCCCACTACCACAACCCTCGATCCGACTGGG
*
12111854 GCTTAAACAAGGAATGATCTCCCTATGCCTAAGCTAGTCCACGAAATGGGC
320 GCTTAAACAAGGAATGAACTCCCTATGCCTAAGCTAGTCCACGAAATGGGC
* **
12111905 ATGCTTAGACATGGAATGAACT-TCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCT
1 ATGCATAGACATGGAATGAACTCT-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACT
* * * * * *
12111969 CAGCCAATCGAAAAGGTAGAAT-ACGCAAGCTGGGGATCGACCCGGT-CCTCCCTACGTGCTGTC
65 CAGCCAACCGAAAAGGTAGAATGA-GCAAACCGAGGACCGACCCGGTCCCT-CCTACGTGCTATC
** * * *
12112032 AATCCTACTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGTGAATGAACTCTGTATGCATAA
128 AATCCTACTGCCGCAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACACCGTATGCATAA
* * *
12112097 GTCAACCCACGAAATGAGCGTGTGGGTGCCGAACTGGCCGAAGAGGCATAATGCGCAAGCTGGGG
193 GTCAACCCACGAAACGAGCGTGTGGGTGCCGAACTGACCGAAGAGGCATAATGCGCAAGCTGAGG
* * * * *
12112162 ATCAGCCCGGTCCCCCTGTCTGTGCTGCTGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCT
258 ATCAGCCCGATCCCCCTGTCTGTGCTGCTGATCCCACTACCACAACCCTCGATCCGACTGGGGCT
* *
12112227 TAGACATGGAATGAACTCCCTATGCCTAAGC
323 TAAACAAGGAATGAACTCCCTATGCCTAAGC
12112258 CAACCCATGA
Statistics
Matches: 301, Mismatches: 43, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
369 6 0.02
370 287 0.95
371 8 0.03
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.20
Consensus pattern (370 bp):
ATGCATAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTC
AGCCAACCGAAAAGGTAGAATGAGCAAACCGAGGACCGACCCGGTCCCTCCTACGTGCTATCAAT
CCTACTGCCGCAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACACCGTATGCATAAGTC
AACCCACGAAACGAGCGTGTGGGTGCCGAACTGACCGAAGAGGCATAATGCGCAAGCTGAGGATC
AGCCCGATCCCCCTGTCTGTGCTGCTGATCCCACTACCACAACCCTCGATCCGACTGGGGCTTAA
ACAAGGAATGAACTCCCTATGCCTAAGCTAGTCCACGAAATGGGC
Found at i:12112263 original size:159 final size:158
Alignment explanation
Indices: 12111907--12112290 Score: 402
Period size: 158 Copynumber: 2.4 Consensus size: 158
12111897 AAATGGGCAT
* *
12111907 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
* *
12111972 CCAATCGAAAAGGTAGAATACGCAAGCTGGGGATCGACCCGGTCCTCCCTACGTGCTGTCAATCC
66 CCAACCGAAAAGGCAGAATACGCAAGCTGGGGATCGACCCGGTCCTCCCTACGTGCTGTCAATCC
* * *
12112037 TACTGCCGCAACCCTCGATCCAGTCTGA
131 CACTGCCACAACCCTCGATCCAGACTGA
* * * * * *
12112065 TCTTAGAC-TGTGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTGTGGGTGC-CG
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC-
*** * * * *
12112128 AACTGGCCGAAGAGGCATAATGCGCAAGCTGGGGATC-AGCCCGGTCC-CCCTGTCTGTGCTG-C
64 AACCAACCGAAAAGGCAGAATACGCAAGCTGGGGATCGA-CCCGGTCCTCCCT-AC-GTGCTGTC
** * * *
12112190 TGGTCCCGCTGCCACAACCCTCGGTCC-GACTGGG
126 -AATCCCACTGCCACAACCCTCGATCCAGACT-GA
* * * *
12112224 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
12112289 CC
66 CC
12112291 GGCCAGAGAG
Statistics
Matches: 181, Mismatches: 36, Indels: 17
0.77 0.15 0.07
Matches are distributed among these distances:
157 8 0.04
158 92 0.51
159 78 0.43
160 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
CCAACCGAAAAGGCAGAATACGCAAGCTGGGGATCGACCCGGTCCTCCCTACGTGCTGTCAATCC
CACTGCCACAACCCTCGATCCAGACTGA
Found at i:12112301 original size:159 final size:158
Alignment explanation
Indices: 12111907--12112315 Score: 427
Period size: 159 Copynumber: 2.6 Consensus size: 158
12111897 AAATGGGCAT
* *
12111907 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
*** * * *
12111972 CCAATCGAAAAGGTAGAATACGCAAGCTGGGGATCGACCCGGTCCTCCCTACGTGCTGTCAATCC
66 CCGGCCGAAGAGGTAAAATGCGCAAGCTGGGGATCGACCCGGTCCTCCCTACGTGCTGTCAATCC
* * *
12112037 TACTGCCGCAACCCTCGATCCAGTCTGA
131 CACTGCCACAACCCTCGATCCAGACTGA
* * * * * *
12112065 TCTTAGAC-TGTGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTGTGGGTGC-CG
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC-
* * * *
12112128 AACTGGCCGAAGAGGCATAATGCGCAAGCTGGGGATC-AGCCCGGTCC-CCCTGTCTGTGCTG-C
64 AACCGGCCGAAGAGGTAAAATGCGCAAGCTGGGGATCGA-CCCGGTCCTCCCT-AC-GTGCTGTC
** * * *
12112190 TGGTCCCGCTGCCACAACCCTCGGTCC-GACTGGG
126 -AATCCCACTGCCACAACCCTCGATCCAGACT-GA
* * * *
12112224 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
12112289 CCGGCC-AGAGAGGTAAAATGCGCAAGC
66 CCGGCCGA-AGAGGTAAAATGCGCAAGC
12112316 CAGGGACAGG
Statistics
Matches: 203, Mismatches: 38, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
157 8 0.04
158 93 0.46
159 99 0.49
160 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
CCGGCCGAAGAGGTAAAATGCGCAAGCTGGGGATCGACCCGGTCCTCCCTACGTGCTGTCAATCC
CACTGCCACAACCCTCGATCCAGACTGA
Found at i:12112335 original size:159 final size:158
Alignment explanation
Indices: 12111907--12112372 Score: 340
Period size: 158 Copynumber: 2.9 Consensus size: 158
12111897 AAATGGGCAT
* * * * *
12111907 GCTTAGACATG-GAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC-
1 GCTTAGAC-TGTGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCGC-CG
* *** * * * * ** * * ** * *
12111970 AGCCAATCGAAAAGGTAGAATACGCAAGCTGGGGATC-GACCCGGTCCTCCCTACGTGCTGTCAA
64 AACCGGCCGAAGAGGCAAAATGCGCAAGCCAGGGATCAG-CCCGATCCCCCCTGTGTGCTATCGA
** * * * *
12112034 TCCTACTGCCGCAACCCTCGATCCAGTCT-GA
128 TCCCGCTGCCACAACCCTCGGTCC-GACTGGG
* ** * * ** *
12112065 TCTTAGACTGTGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTGTGGGTGCCGAA
1 GCTTAGACTGTGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCGCCGAA
* * ** * * *
12112130 CTGGCCGAAGAGGCATAATGCGCAAGCTGGGGATCAGCCCGGT-CCCCCTGTCTGTGCT-GCTGG
66 CCGGCCGAAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTG--TGTGCTATC-GA
12112193 TCCCGCTGCCACAACCCTCGGTCCGACTGGG
128 TCCCGCTGCCACAACCCTCGGTCCGACTGGG
* *
12112224 GCTTAGACATG-GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTC-
1 GCTTAGAC-TGTGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCGC-CG
* *
12112287 AACCGGCC-AGAGAGGTAAAATGCGCAAGCCAGGGA-CAGGCTCGATCCCCCCTGTGTGCTATCG
64 AACCGGCCGA-AGAGGCAAAATGCGCAAGCCAGGGATCA-GCCCGATCCCCCCTGTGTGCTATCG
*
12112350 ATCCTGCTGCCACAACCCTCGGT
127 ATCCCGCTGCCACAACCCTCGGT
12112373 TCGATTTGAT
Statistics
Matches: 247, Mismatches: 48, Indels: 26
0.77 0.15 0.08
Matches are distributed among these distances:
157 8 0.03
158 120 0.49
159 109 0.44
160 10 0.04
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACTGTGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCGCCGAA
CCGGCCGAAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTGTGTGCTATCGATCC
CGCTGCCACAACCCTCGGTCCGACTGGG
Found at i:12112680 original size:26 final size:26
Alignment explanation
Indices: 12112651--12112703 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12112641 CTGGTCCGAT
12112651 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
12112677 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
12112703 C
1 C
12112704 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:12112865 original size:196 final size:194
Alignment explanation
Indices: 12112589--12113123 Score: 605
Period size: 196 Copynumber: 2.8 Consensus size: 194
12112579 TGGCCTAGTC
* * * ** *
12112589 CCCCCTACTTGCTGTCGATCCTGCTGTTGGTCCTGCTCCCGTAACCCTCG-GTCTGGTCCGATCT
1 CCCCCTACGTGCTGTCGATCCTACTGCTGGTCCTGCTGTCG-AACCCTCGATTC-GGTCCGATCT
*
12112653 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
64 TAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * * *
12112718 AAAACGAGCGTACGGGCGCTGAGCTGATCGAAGAGGCAGAATGCACAAGCTAGGGATCGG-CTCG
129 GAAACGAGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATACACAAGCCAGGGATCGGCCT-G
12112782 AT
193 AT
*
12112784 CCCTCCTACGTGCTGTCGATCCTACTGCTGGTCCTGCTGTCGCAACCCTCGATTCGGTTCGATCT
1 CCC-CCTACGTGCTGTCGATCCTACTGCTGGTCCTGCTGTCG-AACCCTCGATTCGGTCCGATCT
* * *
12112849 TAAATTGGGAATGAACTCCGTATGCTTAGACATGGAGTGAACTCCCTATGCCTAAGCCAACCCAC
64 TAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * *
12112914 GAAATG-GCCATGCGGGCGCTCAGCCGATCGGAGAGGCAGAATACGCAAGCCGGGGATCGGCCTG
129 GAAACGAG-CGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATACACAAGCCAGGGATCGGCCTG
*
12112978 GT
193 AT
* * * * *
12112980 CCCCCTACGTACTGTCAATCCTA---CT-G---T-C-GT--AACCCTCGATCCAGTCCAATCTTA
1 CCCCCTACGTGCTGTCGATCCTACTGCTGGTCCTGCTGTCGAACCCTCGATTCGGTCCGATCTTA
* * * * *
12113034 GATTGGGAATGAACTCCTTATGCTTAGA-TTGGGGATGAACTCCGTCTGCCTAAGTCAACCCACG
66 GATTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACG
12113098 AAACGAGCGTGCGGGCGCTCAGCCGA
130 AAACGAGCGTGCGGGCGCTCAGCCGA
12113124 CCAGAGAGGC
Statistics
Matches: 294, Mismatches: 40, Indels: 24
0.82 0.11 0.07
Matches are distributed among these distances:
182 1 0.00
183 96 0.33
184 1 0.00
186 2 0.01
187 1 0.00
188 1 0.00
191 1 0.00
192 2 0.01
195 22 0.07
196 163 0.55
197 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (194 bp):
CCCCCTACGTGCTGTCGATCCTACTGCTGGTCCTGCTGTCGAACCCTCGATTCGGTCCGATCTTA
GATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
AACGAGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATACACAAGCCAGGGATCGGCCTGAT
Found at i:12113135 original size:183 final size:183
Alignment explanation
Indices: 12112815--12113155 Score: 470
Period size: 183 Copynumber: 1.9 Consensus size: 183
12112805 CTACTGCTGG
* * * * *
12112815 TCCTGCTGTCGCAACCCTCGATTCGGTTCGATCTTAAATTGGGAATGAACTCCGTATGCTTAGAC
1 TCCTACTGTCGCAACCCTCGATCCAGTCCAATCTTAAATTGGGAATGAACTCCGTATGCTTAGAC
* * *
12112880 ATGGAGTGAACTCCCTATGCCTAAGCCAACCCACGAAATGGCCATGCGGGCGCTCAGCCGATCGG
66 ATGGAGTGAACTCCCTATGCCTAAGCCAACCCACGAAACGGCCATGCGGGCGCTCAGCCGACCAG
12112945 AGAGGCAGAATACGCAAGCCGGGGATCGGCCTGGTCCCCCTACGTACTGTCAA
131 AGAGGCAGAATACGCAAGCCGGGGATCGGCCTGGTCCCCCTACGTACTGTCAA
* * *
12112998 TCCTACTGTCGTAACCCTCGATCCAGTCCAATCTTAGATTGGGAATGAACTCCTTATGCTTAGA-
1 TCCTACTGTCGCAACCCTCGATCCAGTCCAATCTTAAATTGGGAATGAACTCCGTATGCTTAGAC
* * * * * *
12113062 TTGGGGATGAACTCCGTCTGCCTAAGTCAACCCACGAAACGAG-CGTGCGGGCGCTCAGCCGACC
66 ATGGAG-TGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GCCATGCGGGCGCTCAGCCGACC
* * *
12113126 AGAGAGGCAGGATGCGCAAGTCGGGGATCG
129 AGAGAGGCAGAATACGCAAGCCGGGGATCG
12113156 AACGGGTGGC
Statistics
Matches: 136, Mismatches: 20, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
182 4 0.03
183 131 0.96
184 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (183 bp):
TCCTACTGTCGCAACCCTCGATCCAGTCCAATCTTAAATTGGGAATGAACTCCGTATGCTTAGAC
ATGGAGTGAACTCCCTATGCCTAAGCCAACCCACGAAACGGCCATGCGGGCGCTCAGCCGACCAG
AGAGGCAGAATACGCAAGCCGGGGATCGGCCTGGTCCCCCTACGTACTGTCAA
Found at i:12113589 original size:26 final size:26
Alignment explanation
Indices: 12113560--12113612 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12113550 CCGATCCAAT
12113560 CTTAGACTAAGAATGAACTCCATATG
1 CTTAGACTAAGAATGAACTCCATATG
** *
12113586 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAAGAATGAACTCCATATG
12113612 C
1 C
12113613 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCATATG
Found at i:12114011 original size:158 final size:159
Alignment explanation
Indices: 12113723--12114253 Score: 438
Period size: 158 Copynumber: 3.4 Consensus size: 159
12113713 CTACTGCTGG
* * * * * *
12113723 TCCTGCTACCGCAACCCTCAGTCTGGTCTGATTTTAGACTGGGAATGAACTCCGTATGCCTAAGC
1 TCCTGCTGCCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATAAACTTCGTATGCCTAAGC
* * *
12113788 CAACCCACTAAACGAGTGTATGGATGCTCAGCCGACCAGAGAGGCAGAATGCGTAAGTCAGGGAT
66 CAACCCACGAAACGAGCGTATGGACGCTCAGCCGACCAGAGAGGCAGAATGCGTAAGTCAGGGAT
12113853 C-AGCCCGATCCCCC-CTACGTGCTATCAA
131 CGA-CCCGATCCCCCTCTACGTGCTATCAA
* *
12113881 TCCTGCTGTCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATAAACTTCGTATGCCTAAGT
1 TCCTGCTGCCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATAAACTTCGTATGCCTAAGC
* * ** * * *
12113946 CAACCCACGAAACGAGCGT-TCGGGCGTTGTGCCGACTAGAGAGGCATATTGCGTAAGTCAGGGA
66 CAACCCACGAAACGAGCGTAT-GGACGCTCAGCCGACCAGAGAGGCAGAATGCGTAAGTCAGGGA
** * *
12114010 TCGACCCGATCCCCCTCTGTGTGCTGTCGA
130 TCGACCCGATCCCCCTCTACGTGCTATCAA
* * * ** * * *
12114040 TCCCGCTGCCACAACCCTCGGTCCGA-CTGGGGCTTAGACAT-AGAATAAAC-TCCTATGGCTAA
1 TCCTGCTGCCGCAACCCTCGGTCTGATCT-GATCTTAGAC-TGGGAATAAACTTCGTATGCCTAA
* * * * ** * * * * *
12114102 GCCAACCCACGAAATGGGCGTGCA-GG-CACTCAGTCGGTCGGAGAAGCAGAATGTGCAAGCCAG
64 GCCAACCCACGAAACGAGCGT--ATGGACGCTCAGCCGACCAGAGAGGCAGAATGCGTAAGTCAG
* * * * * *
12114165 GGATCGGCTCGGT-TCCC-CTACGTGCTACCGA
127 GGATCGACCCGATCCCCCTCTACGTGCTATCAA
* * * * * *
12114196 TCTTGCTACC-TAACCCTCGGTCTGGT-TCGATCTTAGACTGGGAATGAACTTCATATGC
1 TCCTGCTGCCGCAACCCTCGGTCTGATCT-GATCTTAGACTGGGAATAAACTTCGTATGC
12114254 TTAGACTGGG
Statistics
Matches: 292, Mismatches: 70, Indels: 24
0.76 0.18 0.06
Matches are distributed among these distances:
154 1 0.00
155 28 0.10
156 23 0.08
157 4 0.01
158 184 0.63
159 51 0.17
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (159 bp):
TCCTGCTGCCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATAAACTTCGTATGCCTAAGC
CAACCCACGAAACGAGCGTATGGACGCTCAGCCGACCAGAGAGGCAGAATGCGTAAGTCAGGGAT
CGACCCGATCCCCCTCTACGTGCTATCAA
Found at i:12114263 original size:26 final size:26
Alignment explanation
Indices: 12114227--12114279 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12114217 CTGGTTCGAT
12114227 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
* *
12114253 CTTAGACTGGGGATGAGCTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
12114279 C
1 C
12114280 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:12114579 original size:21 final size:20
Alignment explanation
Indices: 12114541--12114580 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
12114531 GGATCGGCCT
12114541 GATCCTCTCTGCGTGCTACC
1 GATCCTCTCTGCGTGCTACC
12114561 GATCCTGCTACTG-GTGCTAC
1 GATCCT-CT-CTGCGTGCTAC
12114581 TACCATAACC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 9 0.50
22 3 0.17
ACGTcount: A:0.12, C:0.35, G:0.23, T:0.30
Consensus pattern (20 bp):
GATCCTCTCTGCGTGCTACC
Found at i:12114645 original size:26 final size:26
Alignment explanation
Indices: 12114607--12114659 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12114597 CTGGTCCAAT
12114607 CTTAGACTGGGAAGGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
* *
12114633 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAAGGAACTCCGTATG
12114659 C
1 C
12114660 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:12115040 original size:159 final size:158
Alignment explanation
Indices: 12114636--12115042 Score: 413
Period size: 159 Copynumber: 2.6 Consensus size: 158
12114626 CCGTATGCTT
* * * *
12114636 AGACATGGAATGAACTCTGTATGCCTAAGCTAACCCATAAAACGAGCGTGCGGGCATTCAACTGA
1 AGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCATTCAGCCGA
* * * * * *
12114701 CCGGAGAGGCAGAATGCACAAGCCGGAGACCGACGCGGTCCCCCTTACGTGCTGTCGATCCTGCT
66 TCGGAGAGGCAGAATGCATAAGCCGGAGACAGACCCGATCCCCCTTACGTGCTGTCGATCCCGCT
* * * *
12114766 ACCGCAACCCTCAGTCCGGTTCGATCTT
131 ACCACAACCCTCAGTCCGGCTCGAGCTA
* * * *
12114794 AGAC-TGGAAATGAACTCTGTATACCTAAGTCAACCCATGAAACGAGCGTGTGGGCATTGAGCCG
1 AGACATGG-AATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCATTCAGCCG
* * * * * * * * *
12114858 GTCGAAGAGGCATAATGCCTAAGCTGGGGATCAG-CCCGATCCCCCTCTGCGTGCTGTTGGTCCC
65 ATCGGAGAGGCAGAATGCATAAGCCGGAGA-CAGACCCGATCCCCCT-TACGTGCTGTCGATCCC
* * * * *
12114922 GCTGCCACAACCCTCGGTCTGGCTGGGGCTA
128 GCTACCACAACCCTCAGTCCGGCTCGAGCTA
** * * **
12114953 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAGCCGA
1 AGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCATTCAGCCGA
* *
12115018 TCGGAGAGGCAGAATACGTAAGCCG
66 TCGGAGAGGCAGAATGCATAAGCCG
12115043 AGGATCGATC
Statistics
Matches: 197, Mismatches: 48, Indels: 7
0.78 0.19 0.03
Matches are distributed among these distances:
157 3 0.02
158 84 0.43
159 107 0.54
160 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (158 bp):
AGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCATTCAGCCGA
TCGGAGAGGCAGAATGCATAAGCCGGAGACAGACCCGATCCCCCTTACGTGCTGTCGATCCCGCT
ACCACAACCCTCAGTCCGGCTCGAGCTA
Found at i:12115137 original size:26 final size:26
Alignment explanation
Indices: 12115108--12115160 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12115098 CCTATCTGAT
*
12115108 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12115134 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12115160 C
1 C
12115161 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12115704 original size:11 final size:11
Alignment explanation
Indices: 12115688--12115720 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
12115678 CAGTTAGGCT
12115688 CTCCGACGATG
1 CTCCGACGATG
12115699 CTCCGACGATG
1 CTCCGACGATG
*
12115710 CTCTGACGATG
1 CTCCGACGATG
12115721 GTGCCCTAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.21
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:12115830 original size:26 final size:26
Alignment explanation
Indices: 12115790--12115842 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12115780 GGCTCAAACT
*
12115790 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
12115816 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
12115842 C
1 C
12115843 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:12117306 original size:156 final size:159
Alignment explanation
Indices: 12117023--12117376 Score: 662
Period size: 156 Copynumber: 2.3 Consensus size: 159
12117013 NNNNNNNNNN
* *
12117023 CATGGAATGAACTCCGTATGCCTAAGCCAA-CCACGAAACGCGTGTGCAGGCGCTCAACCGGTCG
1 CATGGAATGAACTCCCTGTGCCTAAGCCAACCCACGAAACGCGTGTGCAGGCGCTCAACCGGTCG
12117087 GAGAGGCATAATGCACAAGCCGGGGATCGGCCCGGTCCCCATTAGCATGCTGTCGGCCCCGCCTT
66 GAGAGGCATAATGCACAAGCCGGGGATCGGCCCGGTCCCCATTAGCATGCTGTCGGCCCCGCCTT
12117152 CACAA-CCTC-GTCTGA-TGGGGCTTAGA
131 CACAACCCTCGGTCTGACTGGGGCTTAGA
12117178 CATGGAATGAACTCCCTGTGCCTAAGCCAACCCACGAAACGCGTGTGCAGGCGCTCAACCGGTCG
1 CATGGAATGAACTCCCTGTGCCTAAGCCAACCCACGAAACGCGTGTGCAGGCGCTCAACCGGTCG
12117243 GAGAGGCATAATGCACAAGCCGGGGATCGGCCCGGTCCCCATTAGCATGCTGTCGGCCCCGCCTT
66 GAGAGGCATAATGCACAAGCCGGGGATCGGCCCGGTCCCCATTAGCATGCTGTCGGCCCCGCCTT
12117308 CACAACCCTCGGTCTGACTGGGGCTTAGA
131 CACAACCCTCGGTCTGACTGGGGCTTAGA
12117337 CATGGAATGAACTCCCTGTGCCTAAGCCAACCCACGAAAC
1 CATGGAATGAACTCCCTGTGCCTAAGCCAACCCACGAAAC
12117377 ACGCATGAGG
Statistics
Matches: 193, Mismatches: 2, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
155 28 0.15
156 104 0.54
157 4 0.02
158 6 0.03
159 51 0.26
ACGTcount: A:0.23, C:0.33, G:0.27, T:0.17
Consensus pattern (159 bp):
CATGGAATGAACTCCCTGTGCCTAAGCCAACCCACGAAACGCGTGTGCAGGCGCTCAACCGGTCG
GAGAGGCATAATGCACAAGCCGGGGATCGGCCCGGTCCCCATTAGCATGCTGTCGGCCCCGCCTT
CACAACCCTCGGTCTGACTGGGGCTTAGA
Found at i:12117697 original size:26 final size:26
Alignment explanation
Indices: 12117659--12117709 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12117649 CGGTCTGATC
12117659 TTAGACTGAGAATGAACTCCATATGG
1 TTAGACTGAGAATGAACTCCATATGG
* *
12117685 TTAGACTGGGAATGAACTTCATATG
1 TTAGACTGAGAATGAACTCCATATG
12117710 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCATATGG
Found at i:12118193 original size:26 final size:26
Alignment explanation
Indices: 12118157--12118209 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12118147 CTGGTTTGAT
12118157 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
* *
12118183 CTTAGACTGGGGATGAGCTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
12118209 C
1 C
12118210 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:12118576 original size:26 final size:26
Alignment explanation
Indices: 12118539--12118590 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12118529 GGTCCAATCT
12118539 TTAGACTGGGAAGGAACTCCGTATGC
1 TTAGACTGGGAAGGAACTCCGTATGC
* *
12118565 TTAGACAT-GGAATGAACTCTGTATGC
1 TTAGAC-TGGGAAGGAACTCCGTATGC
12118591 CTAAGCTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAAGGAACTCCGTATGC
Found at i:12119065 original size:25 final size:26
Alignment explanation
Indices: 12119037--12119088 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12119027 CCTATCTGAT
*
12119037 CTTAGACT-GGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12119062 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12119088 C
1 C
12119089 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12119757 original size:26 final size:26
Alignment explanation
Indices: 12119717--12119769 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12119707 GGCTCAAACT
*
12119717 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
12119743 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
12119769 C
1 C
12119770 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:12120095 original size:157 final size:158
Alignment explanation
Indices: 12119742--12120135 Score: 422
Period size: 157 Copynumber: 2.5 Consensus size: 158
12119732 AACTCTGTAT
*
12119742 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** * * **
12119807 CCGGCCAGAGAGGCAGACTGCGCAAGTCGGGGATCGGCCCATTTCCCCTCTGCGTGCTGCCGGTC
66 CCGACCGGAGAGGCAGAATGCGCAAACCGGGGATCGGCCCATGTCCCCTCCGCGTGCTGCCAATC
* * *
12119872 TCACTGCCACAACCCTTGGTCTGGCTGG
131 TCACTGCCACAACCCTTGATCCGGCTGA
* * *
12119900 GCTTAGACATGGAATGAACTCCCTATGCCTAGGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
12119965 CCGACCGGAGAGGCAGAATGCGTAAACCGGTGATCTG-TC-TGGTCCCC-CCGACGTGCTGCCAA
66 CCGACCGGAGAGGCAGAATGCGCAAACCGGGGATCGGCCCAT-GTCCCCTCCG-CGTGCTGCCAA
* * * *
12120027 TC-CTGCTGTCGCAACCCTT-ATCCGATCTGA
129 TCTC-ACTGCCACAACCCTTGATCCG-GCTGA
* * * * *
12120057 TCTTAGAC-TGAGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* *
12120121 GTCGCCCGGAGAGGC
65 GCCGACCGGAGAGGC
12120136 TGACGAAGAG
Statistics
Matches: 197, Mismatches: 34, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
156 9 0.05
157 98 0.50
158 90 0.46
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAACCGGGGATCGGCCCATGTCCCCTCCGCGTGCTGCCAATC
TCACTGCCACAACCCTTGATCCGGCTGA
Found at i:12120778 original size:26 final size:26
Alignment explanation
Indices: 12120742--12120794 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12120732 CTGGTTCAAT
12120742 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12120768 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12120794 C
1 C
12120795 CTAAATCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12121503 original size:26 final size:26
Alignment explanation
Indices: 12121465--12121517 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12121455 GGCTCAAACT
12121465 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
12121491 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
12121517 C
1 C
12121518 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:12121856 original size:25 final size:26
Alignment explanation
Indices: 12121809--12121858 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
12121799 CGATCTGATC
12121809 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
*
12121835 TTAGACTGGG-ATGAACTTCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
12121859 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:12122567 original size:26 final size:26
Alignment explanation
Indices: 12122529--12122581 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12122519 GGCTCAAACT
12122529 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12122555 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12122581 C
1 C
12122582 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12122907 original size:26 final size:26
Alignment explanation
Indices: 12122871--12122923 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12122861 CTGATCCAAT
12122871 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12122897 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12122923 C
1 C
12122924 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12129918 original size:26 final size:26
Alignment explanation
Indices: 12129882--12129934 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12129872 ATGGTCCAAT
12129882 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
12129908 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12129934 C
1 C
12129935 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12130633 original size:26 final size:26
Alignment explanation
Indices: 12130595--12130647 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12130585 GGCTCAAAAT
*
12130595 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12130621 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12130647 C
1 C
12130648 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12131143 original size:26 final size:26
Alignment explanation
Indices: 12131096--12131148 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
12131086 CCGGTTCGAT
*
12131096 CTTAGACAGGGAATCAACTCCGTATG
1 CTTAGACAGGGAATCAACTCCGCATG
* * * *
12131122 CTTAGACTGGGGATGAAGTCCGCATG
1 CTTAGACAGGGAATCAACTCCGCATG
12131148 C
1 C
12131149 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (26 bp):
CTTAGACAGGGAATCAACTCCGCATG
Found at i:12131491 original size:26 final size:26
Alignment explanation
Indices: 12131462--12131514 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12131452 CCGATCTGAT
*
12131462 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATCAACTCCGTATG
12131488 CTTAGACATGGAATCAACTCCGTATG
1 CTTAGACATGGAATCAACTCCGTATG
12131514 C
1 C
12131515 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATCAACTCCGTATG
Found at i:12132012 original size:26 final size:26
Alignment explanation
Indices: 12131961--12132013 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12131951 CTGGTCCGAT
*
12131961 CTTAGACTAGGAATGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
12131987 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
12132013 C
1 C
12132014 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:12132581 original size:16 final size:16
Alignment explanation
Indices: 12132552--12132599 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
12132542 GCACATCGCC
*
12132552 CCGG-ACCCCTAATCG
1 CCGGAACCCCCAATCG
12132567 CCGGAACCCCCAATCG
1 CCGGAACCCCCAATCG
*
12132583 TCGGAACCCCCAA-CG
1 CCGGAACCCCCAATCG
12132598 CC
1 CC
12132600 ATTGGTTAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
15 7 0.24
16 22 0.76
ACGTcount: A:0.23, C:0.50, G:0.19, T:0.08
Consensus pattern (16 bp):
CCGGAACCCCCAATCG
Found at i:12133098 original size:160 final size:158
Alignment explanation
Indices: 12132739--12133241 Score: 419
Period size: 158 Copynumber: 3.2 Consensus size: 158
12132729 AACTCCGTAT
* * * * **
12132739 GCTTAGACATGGAATGAACTTCGTATGCCTAGGCCAAACCACGAAACGAGCACGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
** * * * * * *
12132804 TTGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCCTGTGTGCTGTCAATCT
66 CCGACCGAAAAGACAGAATGCGCAAGCCAGGGATCGACCTGGTCCCCCCTGCGTGCTGTCAATCC
* * * *
12132869 TGCTCCCCCAACCCTCGGTCTAGTCTGA
131 CGCTCCCACAACCCTCGGTCTAGGCAGA
* * * * *
12132897 TCTTAGAC-TGGGAATGAACTCCGTACGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * **
12132961 GCCGACCGAAAAGACATACTGCGCAATCCAGGGATCGGCCTGGTCCCCCTCTTGCGTGCTGTCGG
65 ACCGACCGAAAAGACAGAATGCGCAAGCCAGGGATCGACCTGGTCCCCC-C-TGCGTGCTGTCAA
* *
12133026 TCCCGCTGCCACAACCCTCGGTCT-GGCAAGG
128 TCCCGCTCCCACAACCCTCGGTCTAGGC-AGA
* *
12133057 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTGCGGGCGCTCA
* * * * * * * * * *
12133121 GCTGGCCGAAGAGGCAGAATGCGCAAG-CAGGGGATCGGCCCGATCCCCCCTGTGTGCTG-CTGA
65 ACCGACCGAAAAGACAGAATGCGCAAGCCA-GGGATCGACCTGGTCCCCCCTGCGTGCTGTC-AA
* * ** *
12133184 TCCTGCTACCGTAACCCTCGGTCT-GGTCCGA
128 TCCCGCTCCCACAACCCTCGGTCTAGG-CAGA
*
12133215 TCTTAGAC-TAGGAATGAACT-CGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
12133242 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 58, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
157 9 0.03
158 138 0.50
159 8 0.03
160 121 0.44
161 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
CCGACCGAAAAGACAGAATGCGCAAGCCAGGGATCGACCTGGTCCCCCCTGCGTGCTGTCAATCC
CGCTCCCACAACCCTCGGTCTAGGCAGA
Found at i:12133256 original size:25 final size:26
Alignment explanation
Indices: 12133216--12133267 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
12133206 CTGGTCCGAT
12133216 CTTAGACTAGGAATGAACT-CGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
12133241 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
12133267 C
1 C
12133268 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:12133680 original size:158 final size:158
Alignment explanation
Indices: 12133380--12133704 Score: 361
Period size: 158 Copynumber: 2.1 Consensus size: 158
12133370 CCACTGCCGG
* * * **
12133380 TCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCTGCATGCCTAAGC
1 TCCTACTGCCACAACCCTCGGTCCGACTGGAGCTTAGACATGGAATGAACTCCGCATGAATAAGC
** * * * *
12133445 CAACCCATGAAACGAGCGTGCAGGTGCTCAGTCGGCTGGAGAGGCAGAATGTGGAAGCCGGGGAC
66 CAACCCATGAAACGAGCGTGCAGGTGCTCAACCGACTGAAGAGGCAGAATGCGCAAGCCGGGGAC
** * *
12133510 TGGCTTGGTCCCCCCTACGTACTGTCGA
131 TGGCCCGATCCCCCCTACGTACTATCGA
* * * *
12133538 TCCTACTGCCGCAACCCTCGGTTCGATCT-GATCTTAGAC-TGGGAATGAACTCCGTATGAATAA
1 TCCTACTGCCACAACCCTCGGTCCGA-CTGGAGCTTAGACAT-GGAATGAACTCCGCATGAATAA
* * *
12133601 GTCAACCCATGAAACGAGCAG-GCAGGTGCTGAACCGACTGAAGAGGCATAATGCGCAAGCCGGG
64 GCCAACCCATGAAACGAGC-GTGCAGGTGCTCAACCGACTGAAGAGGCAGAATGCGCAAGCCGGG
* * *
12133665 GA-TCGGCCCGATCCCCTCTGCGTGCTATCGA
128 GACT-GGCCCGATCCCCCCTACGTACTATCGA
12133696 TCCTACTGC
1 TCCTACTGC
12133705 TAGTCATGCT
Statistics
Matches: 138, Mismatches: 25, Indels: 8
0.81 0.15 0.05
Matches are distributed among these distances:
157 2 0.01
158 133 0.96
159 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
TCCTACTGCCACAACCCTCGGTCCGACTGGAGCTTAGACATGGAATGAACTCCGCATGAATAAGC
CAACCCATGAAACGAGCGTGCAGGTGCTCAACCGACTGAAGAGGCAGAATGCGCAAGCCGGGGAC
TGGCCCGATCCCCCCTACGTACTATCGA
Found at i:12133769 original size:26 final size:26
Alignment explanation
Indices: 12133740--12133792 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12133730 CCGGTCCGAT
12133740 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
*
12133766 CTTAGACATGGAATGAACTCCTTATG
1 CTTAGACATGGAATGAACTCCGTATG
12133792 C
1 C
12133793 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:12134070 original size:159 final size:154
Alignment explanation
Indices: 12133766--12134264 Score: 443
Period size: 159 Copynumber: 3.2 Consensus size: 154
12133756 ACTCCGTATG
* * * * * * **
12133766 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGT
1 CTTAGAC-TGGAATGAACTCCGTATACCTAATCCAACCAACGAAACGAGCGTGCGGGCGCTCAAC
* * * * * * * * *
12133831 C-GATCGGAGA-GCAAGAATGCGTAAGTCGAGGA-CCAGCCCGATCCCACACTGCATGCTGTCGA
65 CAG-CCGGAAAGGC-AGAATGCGCAAG-CCAGGATCGA-CCC-ATCCC-CCCTGCGTGCTGCCGG
12133893 TCCTGCTGCCGCAACCCTCAGTCCGGTCTGAT
124 TCCTGCTGCCGCAACCCTC-GTCCGGTCTGAT
* * * *
12133925 CTTAAACTGGCAATGAACTCCGTATACCTAAGT-CAACCGATGAAACGAGCGTGCGGGCGCTGAA
1 CTTAGACTGG-AATGAACTCCGTATACCTAA-TCCAACCAACGAAACGAGCGTGCGGGCGCTCAA
* * * * *
12133989 CCAGTCGGAGAGGCATAATGCGCAAGCCAGAGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGGT-
64 CCAGCCGGAAAGGCAGAATGCGCAAGCCAG-GATCGACCC-ATCCCCC-CTGCGTGCTGCCGGTC
* * **
12134053 CTCGCTGCCACAACCCTCGATCCAG-CTGGGG
126 CT-GCTGCCGCAACCCTCG-TCCGGTCT-GAT
* * *
12134084 CTTAGACATGGAATGAACTCCCTATGCCTAATCCAACCAACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATACCTAATCCAACCAACGAAACGAGCGTGCGGGCGCTCAAC
*
12134149 CAGCCGGAAAGGCAGAATGCGCAAGCCAGGATCGACCCATCCCCCCTGCGTGCTGCCGGTCCTAC
65 CAGCCGGAAAGGCAGAATGCGCAAGCCAGGATCGACCCATCCCCCCTGCGTGCTGCCGGTCCTGC
* *
12134214 TGCCGCAACCCTCGGTCCGATCCGAT
130 TGCCGCAACCCTC-GTCCGGTCTGAT
* *
12134240 CTTAGTCTGGGAATGAACTCTGTAT
1 CTTAGACT-GGAATGAACTCCGTAT
12134265 GCTTAGACTG
Statistics
Matches: 277, Mismatches: 47, Indels: 35
0.77 0.13 0.10
Matches are distributed among these distances:
155 1 0.00
156 52 0.19
157 10 0.04
158 21 0.08
159 186 0.67
160 7 0.03
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (154 bp):
CTTAGACTGGAATGAACTCCGTATACCTAATCCAACCAACGAAACGAGCGTGCGGGCGCTCAACC
AGCCGGAAAGGCAGAATGCGCAAGCCAGGATCGACCCATCCCCCCTGCGTGCTGCCGGTCCTGCT
GCCGCAACCCTCGTCCGGTCTGAT
Found at i:12134276 original size:26 final size:26
Alignment explanation
Indices: 12134240--12134292 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12134230 CCGATCCGAT
* *
12134240 CTTAGTCTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12134266 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12134292 C
1 C
12134293 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12135000 original size:26 final size:26
Alignment explanation
Indices: 12134962--12135014 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12134952 GGCTTAAAAT
*
12134962 CTTAGACTGGGAAAGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
12134988 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAAAGAACTCCGTATG
12135014 C
1 C
12135015 CTAATCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:12135287 original size:158 final size:155
Alignment explanation
Indices: 12134988--12135488 Score: 533
Period size: 158 Copynumber: 3.2 Consensus size: 155
12134978 ACTCTGTATG
* *
12134988 CTTAGACATGGAATGAACTCCGTATGCCTAA-TCCAACCCATGAAACGAGCATGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGT-CAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
12135052 CCTACCGAAGAGGCAGAATACGCAAGCAGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
65 CCGACCGAAGAGGCAGAATGCG-AAGC-GGGGATCG-CCCGGTCCCCCCTGCGTGCTGTCGATCC
*
12135117 TACTACCGCAACCCTCGGTCCGGTCTGAT
127 TACTACCGCAACCCTTGGTCCGGTCTGAT
* * *
12135146 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
12135210 CCGATCGAAAAGGCATAATGCGAAGTCGGGGATCAGCCCAGTCCCCCTCTACGTGCTGTCGGTCC
65 CCGACCGAAGAGGCAGAATGCGAAG-CGGGGATC-GCCCGGTCCCCC-CTGCGTGCTGTCGATCC
* * * * *
12135275 CATTGCCACAACCCTTGGTCCGGT-TGGAG
127 TACTACCGCAACCCTTGGTCCGGTCT-GAT
* * * * * * * * *
12135304 CTTAGACATGGAATCAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGGGGGCACTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
12135369 CGACCGAAGAGGCAGAATGCACAAGCCAGGCATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCTT
66 CGACCGAAGAGGCAGAATGC-GAAG-CGGGGATC-GCCCGGTCCCCCCTGCGTGCTGTCGATCCT
* *
12135434 GCTACCGCAACCCTTGGTCCGGTCCGAT
128 ACTACCGCAACCCTTGGTCCGGTCTGAT
* *
12135462 CTTAGAC-TGGGAATGAATTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
12135489 TTAGAATGGG
Statistics
Matches: 280, Mismatches: 53, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
157 23 0.08
158 235 0.84
159 22 0.08
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGAAGAGGCAGAATGCGAAGCGGGGATCGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACT
ACCGCAACCCTTGGTCCGGTCTGAT
Found at i:12135927 original size:158 final size:158
Alignment explanation
Indices: 12135659--12136159 Score: 564
Period size: 158 Copynumber: 3.2 Consensus size: 158
12135649 CCGGCTGGGG
* * *
12135659 CTTAGACATGGAATGAACTCCGCATACCTAAGCCAACCCACGAAATGAGCGTGCGAGCACTCAG-
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAGC
* * *
12135723 TCGACTGGAGAGGCAAAATGCGCAAGCCGGGGA-CCAGTCCGATCCCCCCTGCGTGCTGTCGATC
66 T-GACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACT-CGATCCCCCCTGCGTGCTGTCGATC
*
12135787 CTGCTGTCGTAACCCTCGGTCCGATCCGAT
129 CTGCTGTCGCAACCCTCGGTCCGATCCGAT
* * * * * * *
12135817 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCATGTGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAG
* * * * * *
12135881 CTGACCGAAGAGGCATAATGCGTAAGCCGGGGATCGACTCGGTCCCCCTCTGCGTGCTATCGGTC
65 CTGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACTCGATCCCCC-CTGCGTGCTGTCGATC
* * * * **
12135946 CTGCTGCCACAACCCTCGGTCC-AGCTGGGG
129 CTGCTGTCGCAACCCTCGGTCCGATC-CGAT
* * *
12135976 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGAGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAGC
* * * * * **
12136041 CGGCCGGAGAGGCAGAAA-GCGCAAGTCGGGGATCGGCCCGATCCCCCCTATGTGCTGTCGATCC
66 TGACCGGAGAGGCA-AAATGCGCAAGCCGGGGATCGACTCGATCCCCCCTGCGTGCTGTCGATCC
*
12136105 TGCTGTCGCAACCCTCGATCCGATCCGAT
130 TGCTGTCGCAACCCTCGGTCCGATCCGAT
12136134 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
12136160 GTTAGACTGG
Statistics
Matches: 277, Mismatches: 57, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 144 0.52
159 128 0.46
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAGC
TGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACTCGATCCCCCCTGCGTGCTGTCGATCCT
GCTGTCGCAACCCTCGGTCCGATCCGAT
Found at i:12136098 original size:317 final size:325
Alignment explanation
Indices: 12135488--12136159 Score: 898
Period size: 317 Copynumber: 2.1 Consensus size: 325
12135478 ATTCTGTATG
* * * *
12135488 CTTAGAATGGGGATTAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGGGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCATGGGGGTGCTCAAC
* *
12135553 CGATCGGAGAGGCATAACGCGTAAGCCGGGGATCAGCCCAATCCCCCTCTGCATGCTGTCGATCC
66 CGACCGAAGAGGCATAACGCGTAAGCCGGGGATCAGCCCAAT-CCCCTC-GCATGCTGTCGAT--
* *
12135618 CGCTACCGGTCCTGCTACCACAACCCTCTGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGCA
127 CGCTACCGGTCCTGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGCA
* * *
12135683 TACCTAAGCCAACCCACGAAATGAGCGTGCGAGCACTCAGTCGACTGGAGAGGCAAAATGCGCAA
192 TACCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAGCCGACCGGAGAGGCAAAATGCGCAA
* * * *
12135748 GCCGGGGACCAGTCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGTCGTAACCCTCGGTCCGATC
257 GCCGGGGACCAGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGATC
12135813 CGAT
322 CGAT
* * *
12135817 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCATGTGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCATGGGGGTGCTCAAC
* * * **
12135882 TGACCGAAGAGGCATAATGCGTAAGCCGGGGATC-GACTCGGT-CCC-C-C-T-CTG-CG-T-GC
66 CGACCGAAGAGGCATAACGCGTAAGCCGGGGATCAG-CCCAATCCCCTCGCATGCTGTCGATCGC
* * *
12135938 TATCGGTCCTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCC-CTATG
130 TACCGGTCCTGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGC-ATA
* * *
12136002 CCTAAGCCAACCCACGAAACGGGCGTGCGAGCGCTCAGCCGGCCGGAGAGGCAGAAA-GCGCAAG
194 CCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAGCCGACCGGAGAGGCA-AAATGCGCAAG
* * * *
12136066 TCGGGGATCGGCCCGATCCCCCCTATGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGATCC
258 CCGGGGACCAGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGATCC
12136131 GAT
323 GAT
*
12136134 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
12136160 GTTAGACTGG
Statistics
Matches: 306, Mismatches: 34, Indels: 18
0.85 0.09 0.05
Matches are distributed among these distances:
316 1 0.00
317 198 0.65
318 3 0.01
320 1 0.00
321 2 0.01
322 3 0.01
323 1 0.00
324 1 0.00
326 1 0.00
327 3 0.01
328 1 0.00
329 91 0.30
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (325 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCATGGGGGTGCTCAAC
CGACCGAAGAGGCATAACGCGTAAGCCGGGGATCAGCCCAATCCCCTCGCATGCTGTCGATCGCT
ACCGGTCCTGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGCATACC
TAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAGCCGACCGGAGAGGCAAAATGCGCAAGCCG
GGGACCAGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGATCCGAT
Found at i:12136164 original size:26 final size:26
Alignment explanation
Indices: 12136135--12136185 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12136125 CGATCCGATC
*
12136135 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCATATGG
*
12136161 TTAGACTGGGGATGAACTCCATATG
1 TTAGACTGGGAATGAACTCCATATG
12136186 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:12137797 original size:501 final size:501
Alignment explanation
Indices: 12136841--12137947 Score: 1428
Period size: 501 Copynumber: 2.2 Consensus size: 501
12136831 GTGGCTCAAA
* * * *
12136841 ATCTTAGATTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
1 ATCTAAGAATGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAA
* * * * * *
12136905 CCCACGAAACGAGCATACGGGCGCTTAGCCGGCCGGAGAGGCAGAATGCGCAAGCATGGGATCAG
65 CCCACGAAACGAACGTGCGGGCGCTTAGCTGGCCGGAGAGGCAGAACGCGCAAGCAGGGGATCAG
* *
12136970 CTCGGTCCTCCCTGCATGCTGTCGATCCTACTACCACAACCCTCACTCCGATCTGATCTTAGACT
130 CTAGGTCCTCCCTGCATGCTATCGATCCTACTACCACAACCCTCACTCCGATCTGATCTTAGACT
** * * *
12137035 GGGAATGAACCCCGTATACATAAGTCAACCCATGAAACGAGCGTGCGGGCACTGACCCGGCTGAA
195 GGGAATGAACCCCGTATACATAAGTCAACCCACAAAACGAGCGTGCGGACACTGACCCGACCGAA
* * * * *
12137100 GAGGCATAATGCGTAAGTCGAGGATCGGCCCGATCCCCCTTTACGTGCTGCCAGTCCCGCTGCCA
260 GAGGCATAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTCTACGTACGGCCAGTCCCACTGCCA
* * *
12137165 CAATCCTCGGTCTGACTGGGGCTTAGACATGGAATGAATTCCCTAAGCCTAAGCCAACTCACGAA
325 CAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAAATCCCTAAGCCTAAGCCAACCCACGAA
* * * *
12137230 ACGGGCGTACGGGTGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCC
390 ACGGGCGTACGGATGCTCAACCGACCAGAGAGGCAGAATGCGAAAGCCGAGGATCGACCCGGTCC
* * *
12137295 CCCCTGCGTGCT-ATCGATCCTACTACCGCAACCCTCGGTTCGATCCG
455 CCCCTGCGTGCTGCT-GATCCTACTACCGCAACCCTCGATCCGATCCG
*
12137342 ATCTAATAATGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
1 ATCTAAGAATGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* * *
12137407 CCACGAAACGAACGTGTGGGCGCTTAGCTGGCCGGAGAGGCATAACGCGCAAG-ACGGGGATTAG
66 CCACGAAACGAACGTGCGGGCGCTTAGCTGGCCGGAGAGGCAGAACGCGCAAGCA-GGGGATCAG
* * * * *
12137471 CCTAGTTCC-CCCTGCGTGCTATCGATCCTGCT-CCTGCAACCCTCAGTCC-AGTCTGATCTTAG
130 -CTAGGTCCTCCCTGCATGCTATCGATCCTACTACC-ACAACCCTCACTCCGA-TCTGATCTTAG
* * * ** *
12137533 ACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGACGTTGAGCCGACC
192 ACTGGGAATGAACCCCGTATACATAAGTCAACCCACAAAACGAGCGTGCGGACACTGACCCGACC
* * * *
12137598 GAAGAGGCATAATGCGCAAG-CTGGGGATCGGCCCGGTCCCTCTCTGCGTACGGCCAGTCCCACT
257 GAAGAGGCATAATGCGCAAGTC-GAGGATCGGCCCGATCCCCCTCTACGTACGGCCAGTCCCACT
* *
12137662 GCCATAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCA
321 GCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAAATCCCTAAGCCTAAGCCAACCCA
* * *
12137727 TGAAACGGGTGTAC-GATCGCTCAACCGACTAGAGAGGCAGAATGCGAAAGCC-AGGGATC-ACC
386 CGAAACGGGCGTACGGAT-GCTCAACCGACCAGAGAGGCAGAATGCGAAAGCCGA-GGATCGACC
* ** * *
12137789 CTGGTCCCCCCTGCGTGCTGCTGATCCTGCTGTCGTAACCCTCGATCCGATTCG
449 C-GGTCCCCCCTGCGTGCTGCTGATCCTACTACCGCAACCCTCGATCCGATCCG
* * *
12137843 ATCTTAGACT-GGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
1 ATCTAAGAATGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* * *
12137907 CCACGGAA-TAAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGC
66 CCACGAAACGAA-CGTGCGGGCGCTTAGCTGGCCGGAGAGGC
12137948 TGGTCGATGA
Statistics
Matches: 526, Mismatches: 69, Indels: 23
0.85 0.11 0.04
Matches are distributed among these distances:
499 2 0.00
500 99 0.19
501 418 0.79
502 7 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (501 bp):
ATCTAAGAATGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAACGTGCGGGCGCTTAGCTGGCCGGAGAGGCAGAACGCGCAAGCAGGGGATCAGC
TAGGTCCTCCCTGCATGCTATCGATCCTACTACCACAACCCTCACTCCGATCTGATCTTAGACTG
GGAATGAACCCCGTATACATAAGTCAACCCACAAAACGAGCGTGCGGACACTGACCCGACCGAAG
AGGCATAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTCTACGTACGGCCAGTCCCACTGCCAC
AACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAAATCCCTAAGCCTAAGCCAACCCACGAAA
CGGGCGTACGGATGCTCAACCGACCAGAGAGGCAGAATGCGAAAGCCGAGGATCGACCCGGTCCC
CCCTGCGTGCTGCTGATCCTACTACCGCAACCCTCGATCCGATCCG
Found at i:12137873 original size:25 final size:26
Alignment explanation
Indices: 12137845--12137896 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12137835 CCGATTCGAT
*
12137845 CTTAGACT-GGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12137870 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12137896 C
1 C
12137897 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12138604 original size:159 final size:158
Alignment explanation
Indices: 12138352--12138867 Score: 457
Period size: 159 Copynumber: 3.3 Consensus size: 158
12138342 CCGACTGGGG
* * * * * * * * *
12138352 CTTAGACAT-GGAATAAACTCCCTAAGCCTAAGC-CAACCGATGAAACGGGCGTGCGGTCGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAA-CTCAACCCACGAAACGAGCGTGCAGACACTCA
* * * *
12138415 GCTGGCCGAAGAGGCAGAATACACAAGCCGAGGACCGACCCGATCCCCTCTTGCGTGCTATCGAT
64 GCCGGCCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCTC-TGCGTGCTATCGAT
* *
12138480 CTTGCTGCTGCAACCCTCAGTCTGGTCCGAT
128 CTTGCTGCCGCAACCCTCGGTCTGGTCCGAT
* * * * *
12138511 CTTAGATTGGGAATGAACTCCGTATGCCTAACTCAAGCTACGAAACGAGTGTGCAGACACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTGCAGACACTCAGC
* * * * *
12138576 CGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCGGTCC-AGTACCCCTCTGCGTGCTATCAATC
66 CGGCCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGA-T-CCCCTCTGCGTGCTATCGATC
* * * * * **
12138640 TCGCTGCCACAACCCTTGGTCT-GACTGGGG
129 TTGCTGCCGCAACCCTCGGTCTGGTC-CGAT
* ** * * * *
12138670 CCTAGACAAGGAATGAACTCCGTATGCCTAAGC-GAACCCACGAAATGAGCGTGCAGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAA-CTCAACCCACGAAACGAGCGTGCAGACACTCAG
* ** * * * * * *
12138734 TCGATCGAAGAGGTAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGTTCC
65 CCGGCCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCTCTGCGTGCTATCGATCT
* * *
12138799 TGCTACCGCAACCCTCGGTCCGGTCTGAT
130 TGCTGCCGCAACCCTCGGTCTGGTCCGAT
* *
12138828 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCA
12138868 TGAACTCGGT
Statistics
Matches: 276, Mismatches: 72, Indels: 19
0.75 0.20 0.05
Matches are distributed among these distances:
158 71 0.26
159 197 0.71
160 8 0.03
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTGCAGACACTCAGC
CGGCCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCTCTGCGTGCTATCGATCTT
GCTGCCGCAACCCTCGGTCTGGTCCGAT
Found at i:12138934 original size:40 final size:40
Alignment explanation
Indices: 12138890--12138965 Score: 136
Period size: 40 Copynumber: 1.9 Consensus size: 40
12138880 AGGCGCTAAC
12138890 CCGTGCAGGCGCTAACCCGA-CTGAAAAGCCATAATGAACT
1 CCGTGCAGGCGCTAACCCGATC-GAAAAGCCATAATGAACT
12138930 CCGTGCAGGCGCTAACCCGATCGAAAAGCCATAATG
1 CCGTGCAGGCGCTAACCCGATCGAAAAGCCATAATG
12138966 CGTAAGCCGA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
40 34 0.97
41 1 0.03
ACGTcount: A:0.32, C:0.30, G:0.24, T:0.14
Consensus pattern (40 bp):
CCGTGCAGGCGCTAACCCGATCGAAAAGCCATAATGAACT
Found at i:12139256 original size:26 final size:26
Alignment explanation
Indices: 12139201--12139357 Score: 228
Period size: 26 Copynumber: 6.1 Consensus size: 26
12139191 AGTCCGATCT
*
12139201 TAGACTGGGGATGAACTCC-TATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
*
12139226 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
* *
12139252 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCC
*
12139278 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
*
12139304 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCC
*
12139330 TAGCCAT-GGAATGAACTCCGTATGCC
1 TAGAC-TGGGAATGAACTCCGTATGCC
12139356 TA
1 TA
12139358 AGCCAACCCA
Statistics
Matches: 120, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
25 19 0.16
26 100 0.83
27 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:12139327 original size:78 final size:77
Alignment explanation
Indices: 12139199--12139354 Score: 251
Period size: 78 Copynumber: 2.0 Consensus size: 77
12139189 CCAGTCCGAT
*
12139199 CTTAGACTGGGGATGAACTCCTATGCCTAGACTGGGGATGAACTCCGTATGCCTAGAC-TGGGAA
1 CTTAGACTGGGGATGAACTCCTATGCCTAGACTGGGAATGAACTCCGTATGCCTAGACAT-GGAA
*
12139263 TGAACTTCGTATG
65 TGAACTCCGTATG
* *
12139276 CTTAGACTGGGGATGAACTCCGTATGCCTAGACTGGGAATGAACTCCGTATGCTTAGCCATGGAA
1 CTTAGACTGGGGATGAACTCC-TATGCCTAGACTGGGAATGAACTCCGTATGCCTAGACATGGAA
12139341 TGAACTCCGTATG
65 TGAACTCCGTATG
12139354 C
1 C
12139355 CTAAGCCAAC
Statistics
Matches: 73, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
77 21 0.29
78 51 0.70
79 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (77 bp):
CTTAGACTGGGGATGAACTCCTATGCCTAGACTGGGAATGAACTCCGTATGCCTAGACATGGAAT
GAACTCCGTATG
Found at i:12139620 original size:158 final size:158
Alignment explanation
Indices: 12139337--12139821 Score: 573
Period size: 158 Copynumber: 3.1 Consensus size: 158
12139327 GCTTAGCCAT
* * *
12139337 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGAAG
1 GGAATGAACACCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGAAG
* * * *
12139402 AGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCC-CTTGCGTGCTGTCGATCCTGCTGCTGC
66 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCTC-TGCGTGCTGTCGATCCTGCTGCCGC
*
12139466 AACCCTCGGTCCGGTCCGATCTTAGACTG
130 AACCCTCGATCCGGTCCGATCTTAGACTG
* * ** * * *
12139495 GGAATGAACACCATATGCATAAGTCAACCCACGAAACGAGCGTATGGGTGCTAAGCCGACCGAAG
1 GGAATGAACACCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGAAG
* * * * *
12139560 AGGCATAATGCGTAAGCCGGGGACCGGCCCGATCCCCTCTGCGTGCTGTCGATCCCGCTGCCACA
66 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCA
* * ** * *
12139625 TCCCTCGATCCGACTGGGGT-TTACACAT-
131 ACCCTCGATCCG-GTCCGATCTTAGAC-TG
* * *
12139653 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCCGATCGGA
1 GGAATGAACACCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CCGATCGAA
* * * *
12139718 GAGGCAGAATGCACAAGCCGGAGTTCGGCCCGATCCCCTCTGCGTGGTGTCGATCCTG-TAGCCG
65 GAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATCCTGCT-GCCG
* * *
12139782 CAACTCTCAATCCGGTCCAATCTTAGACTG
129 CAACCCTCGATCCGGTCCGATCTTAGACTG
12139812 GGAATGAACA
1 GGAATGAACA
12139822 TCGTATGCTT
Statistics
Matches: 265, Mismatches: 55, Indels: 13
0.80 0.17 0.04
Matches are distributed among these distances:
158 175 0.66
159 90 0.34
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GGAATGAACACCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGAAG
AGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCA
ACCCTCGATCCGGTCCGATCTTAGACTG
Found at i:12139854 original size:26 final size:26
Alignment explanation
Indices: 12139803--12139855 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12139793 CCGGTCCAAT
*
12139803 CTTAGACTGGGAATGAACATCGTATG
1 CTTAGACTGGGAATGAACATCATATG
*
12139829 CTTAGACTGGGGATGAAC-TCTATATG
1 CTTAGACTGGGAATGAACATC-ATATG
12139855 C
1 C
12139856 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACATCATATG
Found at i:12140814 original size:159 final size:157
Alignment explanation
Indices: 12140522--12140976 Score: 551
Period size: 159 Copynumber: 2.9 Consensus size: 157
12140512 GTGGCTCAAA
* * * * * *
12140522 ATCTTAGACTGGGAATGAACTCCATACGCCTAAGCCAGCCCACAAAACGAGCGTGCGGGCCCTCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * * * *
12140587 ACCGGTCGAAGAGGCAGAATGCGCAAGTCGGGGTTTGGCCCAGT-CCCCTCCTGCGTGCTGTCAA
66 GCCGGTCGAAGAGGCAGAATGCGCAAG-CCGGGATCGACCGA-TCCCCCT-CTGCGTGCTGCCGA
**
12140651 TCCTGCTGCCGTAACCCTC-GATCCGGTCT-G
128 TCCTGCTGCCACAACCCTCAG-TCCGG-CTGG
* * * *
12140681 ATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * *
12140746 GCCGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGACTCGATCCCCCTCTGCGTGCTGCCGGT
66 GCCGGTCGAAGAGGCAGAATGCGCAAGCC-GGGATCGAC-CGATCCCCCTCTGCGTGCTGCCGAT
12140811 CCTGCTGCCACAACCCTCAGTCCGGCTGG
129 CCTGCTGCCACAACCCTCAGTCCGGCTGG
**
12140840 GGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTC
1 ATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTC
*
12140904 AGCCGGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCC-CTGCGTGCTACCGA
65 AGCCGGTCGAAGAGGCAGAATGCGCAAGCCG-GGATCGA-CCGATCCCCCTCTGCGTGCTGCCGA
12140968 TCCTGCTGC
128 TCCTGCTGC
12140977 TGGTCTTACT
Statistics
Matches: 255, Mismatches: 33, Indels: 17
0.84 0.11 0.06
Matches are distributed among these distances:
158 25 0.10
159 220 0.86
160 10 0.04
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (157 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
GCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGATCGACCGATCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCACAACCCTCAGTCCGGCTGG
Found at i:12141942 original size:26 final size:26
Alignment explanation
Indices: 12141904--12141956 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12141894 GGCTCAAAAT
12141904 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
12141930 CTTAGAC-GTGGAATGAACTTCGTATG
1 CTTAGACTG-GGAATGAACTTCGTATG
12141956 C
1 C
12141957 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:12142434 original size:26 final size:26
Alignment explanation
Indices: 12142405--12142457 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12142395 CCAGTTCGAT
*
12142405 CTTAGACT-GGGAATGAACTTCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
12142431 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
12142457 C
1 C
12142458 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:12143169 original size:28 final size:26
Alignment explanation
Indices: 12143129--12143183 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 26
12143119 GGCTCAAAAT
12143129 CTTAGACTGGGAATGAACTCTCCGTATG
1 CTTAGACTGGGAATGAA--CTCCGTATG
12143157 CTTAGAC-GTGGAATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
12143183 C
1 C
12143184 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
26 10 0.38
27 1 0.04
28 15 0.58
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12143546 original size:159 final size:158
Alignment explanation
Indices: 12143383--12143765 Score: 412
Period size: 159 Copynumber: 2.4 Consensus size: 158
12143373 CTGAGTCGGC
* * * * *
12143383 CGAAGAGGCATAATGCGCAAGCCAGGGATTGGCCTGGTCCCCCTCTGCGTGCTATCGATCCCGCT
1 CGAAGAGGCAAAATGCACAAGCCGGGGATCGGCCTGGTCCCCC-CTGCGTGCT-TCGATCCCACT
* * * * * *
12143448 GCCATAACCCTTAG-TCTGGCTGGGGCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCC
64 GCCACAACCC-TAGATCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCC
*
12143512 ACGAAACAGGCGTAC-GGGCACTCAGCCAGT
128 ACAAAACAGGCGTACAGGGCACTCAGCCAGT
* * * * * * * *
12143542 CGAAGAGGTAGAATGCACAAGTCGGGGATCAGCCCGATCCCCCC-GACTTGTTGTCGATCCCACT
1 CGAAGAGGCAAAATGCACAAGCCGGGGATCGGCCTGGTCCCCCCTG-CGTGCT-TCGATCCCACT
* * *
12143606 GCCACAACCCTCGATCCGACTATGGCTTAGACATGGAATGAACTCCTTATGACTAAGCCAACCCA
64 GCCACAACCCTAGATCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCA
* * *
12143671 CAAAACAGGCGTACAGGGCGCTCAGTCGGT
129 CAAAACAGGCGTACAGGGCACTCAGCCAGT
* * * * *
12143701 CGGAGAGGCAAAATGCATAAGCTGGGGATCGACCTGGTCCCCCCTGCGTGCTTCCGATCCTACTG
1 CGAAGAGGCAAAATGCACAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTT-CGATCCCACTG
12143766 TTGCAACCTT
Statistics
Matches: 180, Mismatches: 39, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
157 3 0.02
158 82 0.46
159 94 0.52
160 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
CGAAGAGGCAAAATGCACAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTTCGATCCCACTGC
CACAACCCTAGATCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCACA
AAACAGGCGTACAGGGCACTCAGCCAGT
Found at i:12143819 original size:26 final size:26
Alignment explanation
Indices: 12143790--12143842 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12143780 CCGGTCTGAT
12143790 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
* *
12143816 CTTAGATTAGGGATGAACTTCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
12143842 C
1 C
12143843 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:12144195 original size:26 final size:26
Alignment explanation
Indices: 12144157--12144209 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12144147 CCGATCCAAT
*
12144157 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12144183 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12144209 C
1 C
12144210 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12144338 original size:196 final size:195
Alignment explanation
Indices: 12143986--12144497 Score: 614
Period size: 196 Copynumber: 2.6 Consensus size: 195
12143976 TCCGACTGGG
* * * * * * *
12143986 GCTTAGACATGGAATGAACTACGTATGCCTTATCCAATCAACGAAACAAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCA-
* * * * * * * * **
12144051 TCGGCTGGAGAGGCAGAATGTGTAAG-TCGGGGATCGATCCGGTCCCCCCTGCGTGCTGTCGATC
65 ACCGCCGAAGAGGCAGAATGCGCAAGCT-GGGGATCGACCCGGTCCCCCCTGCATGCTACCGATC
* * * * * *
12144115 CTGCTGCTGGTCCTGCTGCCACAACCCTTGGTCCGATCCAATCTTAGACTGGGAATGAACTCTGT
129 CTACTGCTGGTCATGCTACCACAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAACTCCGT
12144180 AT
194 AT
*
12144182 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAA
* * * *
12144247 CCAGCCGAAGAGGCAGAAAGCGCAAGCTGTGGATCGGCCCGGTCCCCCCTGCATGCTACCGATTC
66 CC-GCCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCATGCTACCGATCC
* * * *
12144312 TACTGTTGGTCATGCTACCGCAACCCTCGGTCTGATCCGATCTTAGACTAGGAATGAACTCCGTA
130 TACTGCTGGTCATGCTACCACAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAACTCCGTA
12144377 T
195 T
* *
12144378 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAA
* * * * *
12144443 CCGACCAGAA-AGGTAGAATGCGCAAGCCGGGGATCGACACGATCCCCCCTTCATG
66 CCG-CC-GAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCATG
12144498 TTGTCGATCC
Statistics
Matches: 269, Mismatches: 43, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
195 2 0.01
196 263 0.98
197 4 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (195 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAA
CCGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCATGCTACCGATCCT
ACTGCTGGTCATGCTACCACAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAACTCCGTAT
Found at i:12144382 original size:26 final size:26
Alignment explanation
Indices: 12144353--12144405 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12144343 CTGATCCGAT
12144353 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
12144379 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
12144405 C
1 C
12144406 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:12144732 original size:159 final size:158
Alignment explanation
Indices: 12144379--12144756 Score: 448
Period size: 159 Copynumber: 2.4 Consensus size: 158
12144369 ACTCCGTATG
* * *
12144379 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCCTGCGGGCGCTCAAC
* * *
12144444 CGACCAGAAAGGTAGAATGCGCAAGCCGGGGATCGACACGATCCCCCCTTCATGTTGTCGATCCT
66 AGACCAGAAAGGCAGAATGCGCAAGCCGGGGATCGACACGATCCCCCCTTCATGTTGTCGATCCC
12144509 GCTACCACAACCCTCGATCCGGTCCGAT
131 GCTACCACAACCCTCGATCCGGTCCGAT
* *
12144537 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCCTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCCTGCGGGCGCTCA-
* * * * *
12144601 TCAG-CCAGAGAGGCATAATGTGCAAGCCGAGGG-TCGAC-CTGGT-CCCCCTCTC-TGTGCTGT
64 ACAGACCAGAAAGGCAGAATGCGCAAGCCG-GGGATCGACAC-GATCCCCCCT-TCATGT--TGT
* * * *
12144661 CGGTCCCGCTACCACAACCCTCGGTCCGG-CTGGGT
124 CGATCCCGCTACCACAACCCTCGATCCGGTC-CGAT
* *
12144696 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACGTGCGGGCGCT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CCTGCGGGCGCT
12144757 TGGCCGGTCG
Statistics
Matches: 190, Mismatches: 20, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
157 11 0.06
158 88 0.46
159 90 0.47
160 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCCTGCGGGCGCTCAAC
AGACCAGAAAGGCAGAATGCGCAAGCCGGGGATCGACACGATCCCCCCTTCATGTTGTCGATCCC
GCTACCACAACCCTCGATCCGGTCCGAT
Found at i:12144804 original size:159 final size:158
Alignment explanation
Indices: 12144379--12144880 Score: 480
Period size: 158 Copynumber: 3.2 Consensus size: 158
12144369 ACTCCGTATG
* * ***
12144379 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTGGC
* * * * * *
12144444 CGACCAGAAAGGTAGAATGCGCAAGCCGGGGATCGACACGATCCCCCCTTCATGTTGTCGATCCT
66 CGGCCAGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTTCATGTTGTCGATCCC
12144509 GCTACCACAACCCTCGATCCGGTCCGAT
131 GCTACCACAACCCTCGATCCGGTCCGAT
* *
12144537 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCCTGCGGGCGC-TGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTG-
* * * * * * *
12144600 GTCAGCCAGAGAGGCATAATGTGCAAGCCGAGGGTCGACCTGGT-CCCCCTCTC-TGTGCTGTCG
64 GCCGGCCAGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCT-TCATGT--TGTCG
* * * *
12144663 GTCCCGCTACCACAACCCTCGGTCCGG-CTGGGT
126 ATCCCGCTACCACAACCCTCGATCCGGTC-CGAT
*
12144696 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACGTGCGGGCGCTTGG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTTGG
* * * * * * * * * *
12144760 CCGGTCGGAGAGGTAGAATACGCAAGGCAAGGAT-TAGCCCGGTCCCCCCTGCGTGCTATCGATC
65 CCGGCCAGAGAGGTAGAATGCGCAAGCCGAGGATCGA-CCCGGTCCCCCCTTCATGTTGTCGATC
** * ** ** *
12144824 TTGCTATCGTAACCCTCGATTTGGTCCAAT
129 CCGCTACCACAACCCTCGATCCGGTCCGAT
12144854 CTTAGAC-TAGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
12144881 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 56, Indels: 28
0.77 0.16 0.08
Matches are distributed among these distances:
157 11 0.04
158 137 0.50
159 115 0.42
160 11 0.04
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTGGC
CGGCCAGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTTCATGTTGTCGATCCC
GCTACCACAACCCTCGATCCGGTCCGAT
Found at i:12144898 original size:26 final size:26
Alignment explanation
Indices: 12144854--12144906 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12144844 TTGGTCCAAT
*
12144854 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* * *
12144880 CTTAGACTGGGGATAAACTTCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
12144906 C
1 C
12144907 CTAAATCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:12151967 original size:158 final size:158
Alignment explanation
Indices: 12151532--12151968 Score: 434
Period size: 158 Copynumber: 2.8 Consensus size: 158
12151522 AACTCCGTGT
* * * *
12151532 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * **
12151597 CCGGTCGGAGAGGTAGAATGAACAAGTCGAGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATC
66 CC-GCCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTACCGATC
* * *
12151662 CTGCTGCCACAACCCTCGGTCTGATCTGA
130 CTGCTGCCACAACCCTCAGTCCGAGCTGA
* ** * * * * *
12151691 TCTTAGAC-TGGGAATGAACTTTGTATGCATAAGTCAACCCACGAAACGAGTGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * *
12151755 GCCGACCGAAGAGGCAAAATGCGCAAGCTGCGG-TCGGCTCGGTCCCCCTTTGCGTGCTACCGAT
65 GCCG-CCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTACCGAT
* *
12151819 -CTCGCTGCCACAACCCTTAGTCCG-GCTGGG
129 CCT-GCTGCCACAACCCTCAGTCCGAGCT-GA
* * * * * *
12151849 GCTTACACATGGAATGACCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
*
12151914 CCAGCCGGACAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCC-CTGCGTG
66 CC-GCCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTG
12151969 TTAGACCCCT
Statistics
Matches: 216, Mismatches: 55, Indels: 15
0.76 0.19 0.05
Matches are distributed among these distances:
157 4 0.02
158 125 0.58
159 87 0.40
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTACCGATCC
TGCTGCCACAACCCTCAGTCCGAGCTGA
Found at i:12152185 original size:21 final size:21
Alignment explanation
Indices: 12152155--12152200 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
12152145 TGTCGGTCCC
*
12152155 GCTGCCATAACCCTCGATCTG
1 GCTGCCATAACCCTCGATCCG
* *
12152176 GCTGCTATAACCCTCGGTCCG
1 GCTGCCATAACCCTCGATCCG
12152197 GCTG
1 GCTG
12152201 GGGCTTAGGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.15, C:0.37, G:0.24, T:0.24
Consensus pattern (21 bp):
GCTGCCATAACCCTCGATCCG
Found at i:12154462 original size:185 final size:185
Alignment explanation
Indices: 12154092--12154646 Score: 602
Period size: 185 Copynumber: 3.0 Consensus size: 185
12154082 TCTGGCTGGG
* * ** * * *
12154092 GCTTAGACATGGAATGAACTCCT-TATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCTCTCA
1 GCTTAGACATGGAATGAACT-CTGTATGCCTAAGCGAACCCACGAAACAAGCGTGCGAGCACTCA
* * * ** * * *
12154156 ATCGGTCGGAGAGGCAGAATGCGTAATCCGAGGATCGGCTTGAT-CCCCCATACGTGCTGCCGAT
65 ACCGGTCGGAGAGGCAGAATGCGTAAGCTGAGGATCGGCCCGATGCCCCCCTATGTGCTGCTGAT
* * * *
12154220 CCTGCTGCCGTAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTAT
130 CCTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTTCGTAT
* * * * *
12154276 GCTTAGA-TTGGGGATGAACTTTGTATGCCTAAGTC-AACCCACGAAACAAGCGTGCGAGCGCTT
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAG-CGAACCCACGAAACAAGCGTGCGAGCACTC
* * * * * *
12154339 AGCTGGTCGAAGAGGCAGAATGCGCAAGCTGAGGATCAGCCCGGTGCCCCCCTATGTGCTGCTGA
64 AACCGGTCGGAGAGGCAGAATGCGTAAGCTGAGGATCGGCCCGATGCCCCCCTATGTGCTGCTGA
* * *
12154404 TCCTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGATTAGGAATGAACTTCGTAT
129 TCCTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTTCGTAT
* * *
12154461 GCTTAGACATGGAATGAACTCTGTGTGCCTAAGCGAACCCACGAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCGAACCCACGAAACAAGCGTGCGAGCACTCAA
* * * * * *
12154526 CCGGCCGGAGAGGCAAAATGCGTAAG-TCGGGGATCGGCCCGATG-GCCCCTGTGTGCT-ATCGA
66 CCGGTCGGAGAGGCAGAATGCGTAAGCT-GAGGATCGGCCCGATGCCCCCCTATGTGCTGCT-GA
* * * *
12154588 TCCTACTACCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTAT
129 TCCTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTTCGTAT
12154645 GC
1 GC
12154647 CTAAGTCAAC
Statistics
Matches: 305, Mismatches: 58, Indels: 16
0.80 0.15 0.04
Matches are distributed among these distances:
183 3 0.01
184 148 0.49
185 153 0.50
186 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCGAACCCACGAAACAAGCGTGCGAGCACTCAA
CCGGTCGGAGAGGCAGAATGCGTAAGCTGAGGATCGGCCCGATGCCCCCCTATGTGCTGCTGATC
CTGCTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTTCGTAT
Found at i:12154973 original size:26 final size:26
Alignment explanation
Indices: 12154937--12154989 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12154927 TTGGTCTGAT
*
12154937 CTTAGATTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
12154963 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
12154989 C
1 C
12154990 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:12156575 original size:26 final size:26
Alignment explanation
Indices: 12156537--12156589 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12156527 GGCTCAAACT
12156537 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12156563 CTTAGACCT-GGAATGAACTCCGTATG
1 CTTAGA-CTGGGAATGAACTCCGTATG
12156589 C
1 C
12156590 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12157650 original size:26 final size:26
Alignment explanation
Indices: 12157612--12157664 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12157602 TCAGTCCGAT
12157612 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
12157638 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
12157664 C
1 C
12157665 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12157797 original size:196 final size:196
Alignment explanation
Indices: 12157441--12158501 Score: 1000
Period size: 196 Copynumber: 5.5 Consensus size: 196
12157431 TCTGGTTGGG
* * *
12157441 GCTTAGACATGGAATGAAATTCATATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTC-A
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
* * * * * **
12157505 GCAGGCCGAAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGATCCCCCCTGCATGCTGTCGATC
66 GC-GACTGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCTAATCCCCCCTGCATGCTGTCGATC
* * ** * * *
12157570 CTATTACTGGTCCTACTGTTGTAACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTCCAT
130 CTACTACTGGTCCTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGT
12157635 AT
195 AT
*
12157637 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
* * * * * *
12157702 TCGACTGGAGAGGCAGAATGCGCAAGCTGGGGATTGGCCTAATCCCCCCTACATACTGTCGATCC
66 GCGACTGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCTAATCCCCCCTGCATGCTGTCGATCC
* * * * * *
12157767 TGCTGCTAGTCCTGCTGCCGCAAACCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTA
131 TACTACTGGTCCTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
12157832 T
196 T
* * * * *
12157833 GTTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC-A
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
* * * ** *
12157897 GTC-AGCTAGAGAGGCAGAATGCGCAAGCCGAAGACCGG-CTCGGTCCCCCCTGCGTGCTGTCG-
66 G-CGA-CTGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCT-AATCCCCCCTGCATGCTGTCGA
*
12157959 -------A----TCCTGCTGCCGCAACCCTCGG-TCTGATCCGATCTTAGACTGGGAATGAACTC
128 TCCTACTACTGGTCCTGCTGCCGCAACCCTCGGTTC-GGTCCGATCTTAGACTGGGAATGAACTC
*
12158012 TGTAT
192 CGTAT
* * * * * *
12158017 GCTTAGACATGGAATGAACTCCATATGCCCAAGCCTACCCATGAAACGAGCGTGTGGGCGCTCGA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
* * * * * * * * * * *
12158082 CCGA-TCGAAGGGGTAGAATGCACAAACTGAGGATCGACCCAATCTCCCCTTGCGTGCTGTCGAT
66 GCGACT-GGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCTAATC-CCCCCTGCATGCTGTCGAT
* * * * * *
12158146 CCTACTGCTGGTCCTGCTGTCGCAACACT-TGATCTGGTCCGATCTTAGACTGGGAATGAACTCT
129 CCTACTACTGGTCCTGCTGCCGCAACCCTCGGTTC-GGTCCGATCTTAGACTGGGAATGAACTCC
12158210 GTAT
193 GTAT
* * * * * **
12158214 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGAGCG-TTTA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
* * * * * **
12158278 GCTAGCCGGAGAGGTAGAATGCGTAAGCCGAGGA-CTGG-CTCAGTCCCCCCTGTGTGCTGTCGA
66 GCGA-CTGGAGAGGCAGAATGCGCAAGCCGAGGATC-GGCCT-AATCCCCCCTGCATGCTGTCGA
* * * * *
12158341 TCCTTCTACTGGTCCTACTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGAGAATGAACTCC
128 TCCTACTACTGGTCCTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCC
*
12158406 GTGT
193 GTAT
** * * * *
12158410 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATTCAGGCACT-AA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
*
12158474 GCCGA-TCGGAGAGGCATAATGCGCAAGC
66 G-CGACT-GGAGAGGCAGAATGCGCAAGC
12158502 AAGGGATCGG
Statistics
Matches: 710, Mismatches: 124, Indels: 62
0.79 0.14 0.07
Matches are distributed among these distances:
183 2 0.00
184 130 0.18
185 19 0.03
195 4 0.01
196 419 0.59
197 136 0.19
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
GCGACTGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCTAATCCCCCCTGCATGCTGTCGATCC
TACTACTGGTCCTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
T
Found at i:12157838 original size:26 final size:26
Alignment explanation
Indices: 12157809--12157859 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12157799 CGGTCCAATC
12157809 TTAGAC-TGGGAATGAACTCCGTATGT
1 TTAGACAT-GGAATGAACTCCGTATGT
12157835 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
12157860 CCAAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGT
Found at i:12158043 original size:26 final size:26
Alignment explanation
Indices: 12157992--12158044 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12157982 CTGATCCGAT
**
12157992 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
12158018 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
12158044 C
1 C
12158045 CCAAGCCTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12158102 original size:184 final size:187
Alignment explanation
Indices: 12157781--12158460 Score: 697
Period size: 184 Copynumber: 3.6 Consensus size: 187
12157771 GCTAGTCCTG
* * * *
12157781 CTGCCGCAAACCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGTTTAGACATGGA
1 CTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGA
* * * * * * * *
12157846 ATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCAGCTAGAGAGG
66 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTC-GACCGATCGAGAGG
* * *
12157911 CAGAATGCGCAAGCCGAAGACCGGCTCGGTCCCCCCTGCGTGCTGTCGA-TC-CT-G-
130 TAGAATGCGCAAGCCGAGGACCGGCTCAGTCCCCCCTGCGTGCTGTCGACTCTCTGGC
* * * *
12157965 CTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGA
1 CTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGA
* * * *
12158030 ATGAACTCCATATGCCCAAGCCTACCCATGAAACGAGCGTGTGGGCGCTCGACCGATCGAAGGGG
66 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCGACCGATCG-AGAGG
* * * * * * * *
12158095 TAGAATGCACAAACTGAGGATCGACCCAATCTCCCCTTGCGTGCTGTCGATCCTACTGCTGGTC
130 TAGAATGCGCAAGCCGAGGACCGGCTCAGTC-CCCCCTGCGTGCTGTCGA--CT-CT-CTGG-C
* * * *
12158159 CTGCTGTCGCAACACTTGATCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT
1 CTGC---CGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT
* ** * * *
12158224 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGT-TCGAGCG-TTTAGCTAGCCGG
63 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGT-GGGCGCTCGACCGA-TC-G
* * *
12158287 AGAGGTAGAATGCGTAAGCCGAGGACTGGCTCAGTCCCCCCTGTGTGCTGTCGATCCTTCTACTG
125 AGAGGTAGAATGCGCAAGCCGAGGACCGGCTCAGTCCCCCCTGCGTGCTGTCGA--C-TCT-CTG
12158352 GTCC
186 G--C
* *
12158356 TACTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGAGAATGAACTCCGTGTGCTTAGACATG
1 --CTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATG
*
12158421 GAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGC
64 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGC
12158461 ATTCAGGCAC
Statistics
Matches: 413, Mismatches: 62, Indels: 30
0.82 0.12 0.06
Matches are distributed among these distances:
183 5 0.01
184 128 0.31
185 17 0.04
188 1 0.00
189 1 0.00
191 2 0.00
192 1 0.00
194 4 0.01
196 122 0.30
197 127 0.31
198 1 0.00
199 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (187 bp):
CTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGA
ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCGACCGATCGAGAGGT
AGAATGCGCAAGCCGAGGACCGGCTCAGTCCCCCCTGCGTGCTGTCGACTCTCTGGC
Found at i:12158218 original size:26 final size:26
Alignment explanation
Indices: 12158189--12158241 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12158179 CTGGTCCGAT
*
12158189 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
12158215 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
12158241 C
1 C
12158242 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:12158764 original size:26 final size:26
Alignment explanation
Indices: 12158728--12158806 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
12158718 CTGGTCCCAT
* *
12158728 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
12158754 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
12158780 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
12158806 C
1 C
12158807 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:12159514 original size:26 final size:26
Alignment explanation
Indices: 12159476--12159526 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12159466 CTCAAACTCT
12159476 TAGACTGGAAATGAACTCCGTATGCG
1 TAGACTGGAAATGAACTCCGTATGCG
12159502 TAGACATGG-AATGAACTCCGTATGC
1 TAGAC-TGGAAATGAACTCCGTATGC
12159527 CAAAGCCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (26 bp):
TAGACTGGAAATGAACTCCGTATGCG
Found at i:12159801 original size:159 final size:159
Alignment explanation
Indices: 12159510--12160002 Score: 424
Period size: 159 Copynumber: 3.1 Consensus size: 159
12159500 CGTAGACATG
* * * *
12159510 GAATGAACTCCGTATGCCAAAGCCAACCCACGAAATAAGCGTACGGGCGCTCAGTCGACCGAAAA
1 GAATGAACTCCGTATGCAAAAGCCAACCCACGAAACAAGCGTACGAGCGCTCAGCCGACCGAAAA
* * ** **
12159575 GGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTATGTGCTGTCGATCCTGCTGCTGCA
66 GGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTACGTGCTGTCGATCCCACTGCCACA
12159640 ACCCTCGGTTCGGTCTGATCTTAGACTAA
131 ACCCTCGGTTCGGTCTGATCTTAGACTAA
* * * * * *
12159669 GAATGAACTCCGTATGCAAAAGTCAACCCACGAAACGAGCGTGCGAGCGTTGAGCCTG-CCGAAG
1 GAATGAACTCCGTATGCAAAAGCCAACCCACGAAACAAGCGTACGAGCGCTCAGCC-GACCGAAA
* * * *
12159733 AGGCATAATGCGTAAGCCGAGGATCGACCTGGTCCCCCTCTACGTGCTGTCGATCCCACTGCCAC
65 AGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTACGTGCTGTCGATCCCACTGCCAC
* * ** *
12159798 AACCCTCGG-TCCGACTGGGGCTTAGAC-ATG
130 AACCCTCGGTTCGGTCT-GATCTTAGACTA-A
* ** * * *** * * * *
12159828 GAATGAACTCCCTATGCCTAAGCCAACCTATGAAATGGGCCTGC-AGGCGCTCAGCCGAACGAAG
1 GAATGAACTCCGTATGCAAAAGCCAACCCACGAAACAAGCGTACGA-GCGCTCAGCCGACCGAAA
* * * * ** * **
12159892 AGGCAGAATACACAAGCC-AGGGATCAACCCGATCCCCC-CTGCGTGCTACCGATCCTACTATCA
65 AGGCAGAATGCGCAAGCCGA-GGATCGACCCGATCCCCCTCTACGTGCTGTCGATCCCACTGCCA
* * **
12159955 CAACCCTC-GATCTGGTCTGATCTTAGATTGG
129 CAACCCTCGGTTC-GGTCTGATCTTAGACTAA
*
12159986 GAATGAACTCCATATGC
1 GAATGAACTCCGTATGC
12160003 TCAGACTGGG
Statistics
Matches: 268, Mismatches: 57, Indels: 19
0.78 0.17 0.06
Matches are distributed among these distances:
157 1 0.00
158 62 0.23
159 204 0.76
160 1 0.00
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.19
Consensus pattern (159 bp):
GAATGAACTCCGTATGCAAAAGCCAACCCACGAAACAAGCGTACGAGCGCTCAGCCGACCGAAAA
GGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTACGTGCTGTCGATCCCACTGCCACA
ACCCTCGGTTCGGTCTGATCTTAGACTAA
Found at i:12160327 original size:171 final size:170
Alignment explanation
Indices: 12160014--12160504 Score: 574
Period size: 171 Copynumber: 2.9 Consensus size: 170
12160004 CAGACTGGGG
* * * * *
12160014 ATGAAGTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGCGTGCTCAACCAACCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAACCAATCGGAGAGG
* * * * *
12160079 -CGTATTGCGAAAGCC-AGGGATCAGCCCGATCCCCCTCTACGTGCTG-CTGATCCCGCTACCGG
66 TAG-AATGCGCAAGCCGA-GGATCAGCCCGA-CCCCCTCTGCGTGCTGTC-GATCCCGCTGCCGG
** * *
12160141 TCCTACTGCCACAACCTTCGATCCAACTGGGGCTTAGACATGGA
127 TCCTGTTGCCACAACCCTCGATCCAACTAGGGCTTAGACATGGA
* *
12160185 ATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAACCGATCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAACCAATCGGAGAGG
** *
12160250 TAGAATGCGCAAGCCGAGGATTGGCCCGACCCCCCTCTGCGTGCTGTCGATCCCGCTGCCAGTCC
66 TAGAATGCGCAAGCCGAGGATCAGCCCGA-CCCCCTCTGCGTGCTGTCGATCCCGCTGCCGGTCC
* * ** *
12160315 TGTTGGCACAACCCTCGGTCTGACTAGGGCTTATACATGGA
130 TGTTGCCACAACCCTCGATCCAACTAGGGCTTAGACATGGA
** * * * * **
12160356 ATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCAGGTACTCAGCCAATCAAAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAACCAATCGGAGAGG
* * * *
12160421 TAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCTCTGCATGCTGTCGATCCTGCTGCTGGTCCT
66 TAGAATGCGCAAGCCGAGGATCAGCCCGACCCCCTCTGCGTGCTGTCGATCCCGCTGCCGGTCCT
**
12160486 GTTGCCGTAACCCTCGATC
131 GTTGCCACAACCCTCGATC
12160505 TGGTTTGATC
Statistics
Matches: 271, Mismatches: 46, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
170 46 0.17
171 222 0.82
172 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (170 bp):
ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAACCAATCGGAGAGG
TAGAATGCGCAAGCCGAGGATCAGCCCGACCCCCTCTGCGTGCTGTCGATCCCGCTGCCGGTCCT
GTTGCCACAACCCTCGATCCAACTAGGGCTTAGACATGGA
Found at i:12160543 original size:26 final size:26
Alignment explanation
Indices: 12160514--12160566 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
12160504 CTGGTTTGAT
* *
12160514 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
*
12160540 CTTAGCCATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
12160566 C
1 C
12160567 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:12161677 original size:11 final size:11
Alignment explanation
Indices: 12161645--12161671 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
12161635 CGGTTAGGCT
12161645 CTCCGACGATG
1 CTCCGACGATG
12161656 CTCCGACGATG
1 CTCCGACGATG
12161667 CTCCG
1 CTCCG
12161672 GTGATGGTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.15, C:0.41, G:0.26, T:0.19
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:12162127 original size:159 final size:158
Alignment explanation
Indices: 12161772--12162274 Score: 507
Period size: 158 Copynumber: 3.2 Consensus size: 158
12161762 AACTCCGTAT
* * * *
12161772 GCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCAACAAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTG-TTAA
* ** * * *
12161837 -CCGGTCGGAGAGATAGAATGCACAAGCCAGGGATCGGCCCGATCCCCC-CTGCATGCTGTCGAT
65 GTCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGG-CCGGTCCCCCTCTGCGTGCTGCCGAT
* * * * *
12161900 CCTGCTGCCGTAATCGTCAGTCCGATCTGA
129 CCTACTGCCGCAACCCTCAGTCCGAGCTGA
* * * * *
12161930 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCGTTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGTTAA
* * * * * *
12161994 GTCGGTCGAAAAGGCATAATGCACAAGCCAAGGATCGGCCTGGTCCCCCTCTACGTGCTGCCGGT
65 GTCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCC-GGTCCCCCTCTGCGTGCTGCCGAT
* * * *
12162059 CCCACTGCCACAACCCTCAGTCTG-GCTGGG
129 CCTACTGCCGCAACCCTCAGTCCGAGCT-GA
* * * * *
12162089 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGTTAAG
* * * *
12162154 TCGGCCGGAGAGGCAGAATGCACAAGTCGGGGATCGGTCCGGTCCCCCT-TGCGTGCTGCCAATC
66 TCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGG-CCGGTCCCCCTCTGCGTGCTGCCGATC
*
12162218 CTACTGCCGCAACCCTCGGTCC-AGTCTGA
130 CTACTGCCGCAACCCTCAGTCCGAG-CTGA
* *
12162247 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
12162275 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 57, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
157 7 0.03
158 145 0.52
159 123 0.44
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGTTAAG
TCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCGGTCCCCCTCTGCGTGCTGCCGATCC
TACTGCCGCAACCCTCAGTCCGAGCTGA
Found at i:12162277 original size:26 final size:26
Alignment explanation
Indices: 12162248--12162300 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12162238 CCAGTCTGAT
12162248 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
12162274 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
12162300 C
1 C
12162301 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:12162472 original size:26 final size:26
Alignment explanation
Indices: 12162443--12162495 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12162433 CCGATCTGAT
12162443 CTTAGAC-TAGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
12162469 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
12162495 C
1 C
12162496 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:12162567 original size:195 final size:195
Alignment explanation
Indices: 12162224--12162588 Score: 522
Period size: 195 Copynumber: 1.9 Consensus size: 195
12162214 AATCCTACTG
* *
12162224 CCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATG
1 CCGCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATG
* * * * * **
12162289 AACTTCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGTGCTCAACCGGTCGAGAGGCAGA
66 AACTTCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAACCGACCGAGAGGCAGA
12162354 ATACGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTACCAATCCTGCTGCTAGTCCTGCTA
131 ATACGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTACCAATCCTGCTGCTAGTCCTGCTA
12162419 CCGCAACCCTCGGTCC-GATCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACAT-GGAA
1 CCGCAACCCTCGGTCCAG-TCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGAC-TGGGAA
*
12162482 TGAAC-TCTGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAACCGACCGAAGAGG
64 TGAACTTC-GTATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAACCGACCG-AGAGG
** * * * *
12162546 CAG-ATGTGCAAGTCGGGGATCGACCCGCTCCCCCCTGTGTGCT
127 CAGAATACGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCT
12162589 GTCGATCCTA
Statistics
Matches: 150, Mismatches: 16, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
194 3 0.02
195 138 0.92
196 9 0.06
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.20
Consensus pattern (195 bp):
CCGCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATG
AACTTCGTATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAACCGACCGAGAGGCAGA
ATACGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTACCAATCCTGCTGCTAGTCCTGCTA
Found at i:12168652 original size:26 final size:26
Alignment explanation
Indices: 12168616--12168668 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12168606 CCGGTCTGAT
*
12168616 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
12168642 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
12168668 C
1 C
12168669 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:12169779 original size:159 final size:159
Alignment explanation
Indices: 12169365--12169779 Score: 488
Period size: 159 Copynumber: 2.6 Consensus size: 159
12169355 CTCCGTATGG
*
12169365 TTAGACATGCAATGAACTCCATATGCCTAAGCCAACCCACGAAA-TGAGCGTGCGGGCGCTCAGT
1 TTAGACATGCAATGAACTCCATATGCCTAAGCCAACCCATGAAACTGAGCGTGCGGGCGCTCAGT
* *
12169429 CGGCCGGAA-AGGCAGAATGCACAAGTCGGGGACCGGCCCAGTCCCCCCTGCGTGCTGTCGATCC
66 CGGCC-GAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCAGTCCCCCCTGCGTGCTGTCGATCC
* * *
12169493 TGCTGCCGCAACCCTTCATCCAGTCTGATC
130 TGCTACCACAACCCTTCATCCAGTCTGAGC
* * * * * ** *
12169523 TTAGAC-TACGAATGAACTCCGTATGCCAAAGTCAACCCATGAAAC-GAGCGTGTGGGCATTGAG
1 TTAGACATGC-AATGAACTCCATATGCCTAAGCCAACCCATGAAACTGAGCGTGCGGGCGCTCAG
* * * * *
12169586 CCGGCCGAAGAGGCATAATGCGCAAG-CTGAGGATCGGCCCGGTCCCTCTCTGCGTGCTG-CTGA
65 TCGGCCGAAGAGGCAGAATGCGCAAGTC-GGGGATCGGCCCAGTCCC-CCCTGCGTGCTGTC-GA
* *
12169649 TCCTGCTACCACAACCC-TCAATCTAG-CTGGGGC
127 TCCTGCTACCACAACCCTTC-ATCCAGTCT-GAGC
* *
12169682 TTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCATGAAACTG-TCGTGCGGGCGCTCAGT
1 TTAGACATGCAATGAACTCCATATGCCTAAGCCAACCCATGAAACTGAGCGTGCGGGCGCTCAGT
*
12169746 CGGCCGAAGAGGCAGAATGCGTAAGTCGGGGATC
66 CGGCCGAAGAGGCAGAATGCGCAAGTCGGGGATC
12169780 AGCAGCCAAT
Statistics
Matches: 212, Mismatches: 34, Indels: 21
0.79 0.13 0.08
Matches are distributed among these distances:
157 6 0.03
158 89 0.42
159 113 0.53
160 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
TTAGACATGCAATGAACTCCATATGCCTAAGCCAACCCATGAAACTGAGCGTGCGGGCGCTCAGT
CGGCCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCAGTCCCCCCTGCGTGCTGTCGATCCT
GCTACCACAACCCTTCATCCAGTCTGAGC
Found at i:12169857 original size:26 final size:26
Alignment explanation
Indices: 12169821--12169873 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12169811 CTAGTCTAAT
12169821 CTTAGACTAGGAATGAAC-TCTGTATG
1 CTTAGACTAGGAATGAACTTC-GTATG
*
12169847 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
12169873 C
1 C
12169874 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:12170052 original size:26 final size:26
Alignment explanation
Indices: 12170016--12170068 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12170006 CTGATCTGAT
*
12170016 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
12170042 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
12170068 C
1 C
12170069 CTAAGCCAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:12170298 original size:159 final size:158
Alignment explanation
Indices: 12170042--12170538 Score: 473
Period size: 159 Copynumber: 3.1 Consensus size: 158
12170032 ACTTCGTATG
* * *
12170042 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAGCCCACGAAATGAACGTGCGGGCA-CTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-AGCTCAG
** * * * *
12170106 CCGGTCAGAA-AGGCAGAATAAGCAAGCCAGGGATTGGCCCGGTCCCCACCTGCATGCTGTCGAT
65 CCGGTC-GAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCC-CCTGCGTGCTGCCGAT
* * *
12170170 CTTGCTGTCGCAACCCTCGGTTTGATCCAAT
128 CTTGCTGCCGCAACCCTCGGTCTGATCCGAT
* * * *
12170201 CTTAGAC-TGGGAATGAACTCCGTATACCTAAGTCAACCCACAAAACGAGCGTGCGGGAGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
* * * * ** * *
12170265 TCGGTCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCTAGTCCCCCTCTGCGTGATGCCAATC
65 CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGCCGATC
** * * * * * **
12170330 CCGCTGCCACAGCCCTCGGTCCG-GCTGGGG
129 TTGCTGCCGCAACCCTCGGTCTGATC-CGAT
* * * * *
12170360 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGACAGGAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAGC
* * * * *
12170425 CGATCGGAGAGGTAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCTT
66 CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCTT
* * *
12170490 GCTACCGTAACCCTTGGTCTGATCCGAT
131 GCTGCCGCAACCCTCGGTCTGATCCGAT
*
12170518 GTTAGAC-TGGGAATGAACTCC
1 CTTAGACAT-GGAATGAACTCC
12170539 ATTTGCTTAG
Statistics
Matches: 262, Mismatches: 68, Indels: 17
0.76 0.20 0.05
Matches are distributed among these distances:
157 1 0.00
158 55 0.21
159 205 0.78
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAGC
CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCTT
GCTGCCGCAACCCTCGGTCTGATCCGAT
Found at i:12172663 original size:26 final size:26
Alignment explanation
Indices: 12172625--12172677 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12172615 GGCTCAAACT
12172625 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12172651 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
12172677 C
1 C
12172678 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12172838 original size:26 final size:26
Alignment explanation
Indices: 12172809--12172861 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12172799 CCGGTCTAAT
12172809 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
12172835 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
12172861 C
1 C
12172862 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:12172945 original size:184 final size:185
Alignment explanation
Indices: 12172624--12172964 Score: 499
Period size: 184 Copynumber: 1.8 Consensus size: 185
12172614 TGGCTCAAAC
12172624 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * ** * *
12172689 CACGAAACGAGCGTGCAGGTGCTCAGCCGGCCGGAGAGGCAGAATACGTAAGCTGGTGATCGGCC
66 CACGAAACGAGCGTGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATACCCAAGCAGGTGATCAGCC
*
12172754 TGATCCCCC-CTACGAGCTGTCGATCCTACTGCCACAACCAGCGGTCCGGTCTAA
131 CGATCCCCCTCTACGAGCTGTCGATCCTACTGCCACAACCAGCGGTCCGGTCTAA
* *
12172808 TCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGAGGATGAACTCCGTATGCCTAAGTCAAC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAAC
** * *
12172872 CCACGAAACGAGCGTGTGGGCGCTCAGCCAGCCGGAGAGGCATAATGCCCAAGTCAGG-GATCAG
65 CCACGAAACGAGCGTGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATACCCAAG-CAGGTGATCAG
* * *
12172936 CCCGATCCCCCTCTGCGTGTTGTCGATCC
129 CCCGATCCCCCTCTACGAGCTGTCGATCC
12172965 CGCTATTGGT
Statistics
Matches: 138, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
183 2 0.01
184 119 0.86
185 17 0.12
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (185 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CACGAAACGAGCGTGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATACCCAAGCAGGTGATCAGCC
CGATCCCCCTCTACGAGCTGTCGATCCTACTGCCACAACCAGCGGTCCGGTCTAA
Found at i:12173161 original size:170 final size:170
Alignment explanation
Indices: 12172834--12173148 Score: 375
Period size: 170 Copynumber: 1.9 Consensus size: 170
12172824 AACTCCGTAT
* * * **
12172834 GCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGCACGCTCAG
* * * * * **
12172899 CCAGCCGGAGAGGCATAATGCCCAAGTCAGGGATCAGCCCGATCCCCCTCTGCGTGTTGTCGATC
66 CCAACCGGAGAGGCAAAATACCAAAGTCAGGGATCAGCCCGATCCCCCTCTGCGTGCTACCGATC
* *
12172964 CCGCTATTGGTCCTGCTACCATAACCCTCGGTCCGGTTGG
131 CCGCTACTAGTCCTGCTACCATAACCCTCGGTCCGGTTGG
*
12173004 GCTTAGACATG-GAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGCACGCTCA
1 GCTTAGAC-TGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGCACGCTCA
* * * * *
12173068 GCCAACCGGAGAGGCAAAATACGAAAG-CTGGGGATCGGCCTGCTCCCCC-CTTGCGTGCTACCG
65 GCCAACCGGAGAGGCAAAATACCAAAGTC-AGGGATCAGCCCGATCCCCCTC-TGCGTGCTACCG
* * *
12173131 ATCCTGTTGCTAGTCCTG
128 ATCCCGCTACTAGTCCTG
12173149 TTGTCGTAAC
Statistics
Matches: 119, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
169 2 0.02
170 115 0.97
171 2 0.02
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (170 bp):
GCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGCACGCTCAG
CCAACCGGAGAGGCAAAATACCAAAGTCAGGGATCAGCCCGATCCCCCTCTGCGTGCTACCGATC
CCGCTACTAGTCCTGCTACCATAACCCTCGGTCCGGTTGG
Found at i:12173627 original size:159 final size:157
Alignment explanation
Indices: 12173201--12173704 Score: 439
Period size: 159 Copynumber: 3.2 Consensus size: 157
12173191 AACTTTGTAT
* * * * *
12173201 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCCCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
* * **
12173266 CCGATCGAAGAGGTAAAATAAGCAAGCCGGGGACCT-GCCCGATTCCCCCCTATGTGCTGTCGAT
66 CCGATCGAAGAGGTAAAATGAGCAAGCCGAGGA--TAGCCCGA-TCCCCCCTGCGTGCTGTCGAT
* *
12173330 CCTGCTATCACAACCCTCGGTCCAATCTGA
128 CCCGCTACCACAACCCTCGGTCCAATCTGA
* * * * * *
12173360 TCTTAGA-TTGGGAATGAAC-CCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGTTG
1 GCTTAGACAT-GGAATGAACTCCC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTC
* * * *
12173423 AGCCGATCGAAAAGGCATAAA-GTGCAAGCC-AGGGATCAACCCGATCCCCCTCTGCGTGCTGTC
64 AGCCGATCGAAGAGGTA-AAATGAGCAAGCCGA-GGAT-AGCCCGATCCCCC-CTGCGTGCTGTC
* * ** *
12173486 -AGTCCCGCTGCCATAACCCTCGGTCTGA-CTGGG
125 GA-TCCCGCTACCACAACCCTCGGTCCAATCT-GA
* *
12173519 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGGGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
* * * * * * *
12173584 CCGACCGGAGAGGTAGAATGCGCAAGCCGAGGATAGGCTCGATCCCCCCTGCGAGCTATCGATCC
66 CCGATCGAAGAGGTAAAATGAGCAAGCCGAGGATA-GCCCGATCCCCCCTGCGTGCTGTCGATCC
* * ** * **
12173649 TGCTGCTGCAACCCTCGGTTCGGTCTGA
130 CGCTACCACAACCCTCGGTCCAATCTGA
* *
12173677 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCCTATGC
12173705 TTAGATTGGG
Statistics
Matches: 274, Mismatches: 54, Indels: 35
0.75 0.15 0.10
Matches are distributed among these distances:
157 2 0.01
158 69 0.25
159 195 0.71
160 8 0.03
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
CCGATCGAAGAGGTAAAATGAGCAAGCCGAGGATAGCCCGATCCCCCCTGCGTGCTGTCGATCCC
GCTACCACAACCCTCGGTCCAATCTGA
Found at i:12173714 original size:26 final size:26
Alignment explanation
Indices: 12173678--12173730 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12173668 TCGGTCTGAT
12173678 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
12173704 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12173730 C
1 C
12173731 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12173848 original size:184 final size:184
Alignment explanation
Indices: 12173532--12173888 Score: 450
Period size: 184 Copynumber: 1.9 Consensus size: 184
12173522 TAGACATGGA
* *
12173532 ATGAACTCCCTATGCCTAAGCCAACCAACGAAACGGGCGTGCGAGCGCTCAGCCGACCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCAACGAAACGAGCGTGCGAGCGCTCAACCGACCGGAGAGG
* * * * *
12173597 TAGAATGCGCAAGCCGAGGATAGGCTCGATCCCCCCTGCGAGCTATCGATCCTGCTGCTGCAACC
66 TAAAATGCGCAAGCAGAGGATAGGCTCGATCCCCCCTACGAGCTATCGATCCTACTGCCGCAACC
* * * *
12173662 CTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGG
131 CTCAGTCCGGTCTAATCTTAGACTGGCAATGAACTCCGTATGCTTAGATTGGGG
** * * * * * *
12173716 ATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGC-AGGCGTTCAACCGATCGGAGCG
1 ATGAACTCCCTATGCCTAAGCCAACCAACGAAACGAGCGTGCGA-GCGCTCAACCGACCGGAGAG
* * * *
12173780 GTAAAATGCGTAAGTCAG-GGACTA-GCTGGATCCCCCCTACGTGCTGTCGATCCTACTGCCGCA
65 GTAAAATGCGCAAG-CAGAGGA-TAGGCTCGATCCCCCCTACGAGCTATCGATCCTACTGCCGCA
*
12173843 ACCCTCAGTCCGGTCTAATCTTAGACTGGCAATGAACTTCGTATGC
128 ACCCTCAGTCCGGTCTAATCTTAGACTGGCAATGAACTCCGTATGC
12173889 CTAAGCCAAC
Statistics
Matches: 146, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
183 1 0.01
184 141 0.97
185 4 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (184 bp):
ATGAACTCCCTATGCCTAAGCCAACCAACGAAACGAGCGTGCGAGCGCTCAACCGACCGGAGAGG
TAAAATGCGCAAGCAGAGGATAGGCTCGATCCCCCCTACGAGCTATCGATCCTACTGCCGCAACC
CTCAGTCCGGTCTAATCTTAGACTGGCAATGAACTCCGTATGCTTAGATTGGGG
Found at i:12173960 original size:501 final size:501
Alignment explanation
Indices: 12172973--12174232 Score: 1361
Period size: 501 Copynumber: 2.5 Consensus size: 501
12172963 CCCGCTATTG
* * * **
12172973 GTCCTGCTACCATAACCCTCGGTCCG-GTTGGGCTTAGACATGGAATGAACTCTGTATGCCTAAG
1 GTCCTGCTGCCATAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * * * *
12173037 CCAACCCACGAAACGAGCGTGCGCA-CGCTCAGCCAACCGGAGAGGCAAAATACGAAAGCTGGGG
66 CCAACCCACGAAACGGGCGTGCG-AGCGCTCAGCCGACCGGAGAGGCAGAATACGCAAGCCGAGG
* *
12173101 ATCGGC-CTGCTCCCCCCTTGCGTGCTACCGATCCTGTTGCTAGTCCTGTTGTCGTAACCCTTGG
130 ATCGGCTC-GATCCCCCC-TGCGTGCTACCGATCC---TGCT-G--C---TG-C--AACCCTCGG
* * * * **
12173165 TCCAATCTGATGTTAGACTGGAAAGGAACTTTGTATGCTTAGACATGGAATGAACTCCGTATGCC
181 TCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCC
* * * *
12173230 TAAGCCAACCCACGAAATGAGCGTACGGGCCCTCAGCCGATCGAAGAGGTAAAATAAGCAAGCCG
246 TAAGCCAACCCACGAAACGAGCGTACAGGCCCTCAACCGATCGAAGAGGTAAAATAAGCAAGCCA
* * * * *
12173295 GGGACCTGCCCGATTCCCCCCTATGTGCTGTCGATCCTGCTATCACAACCCTCGGTCCAATCTGA
311 GGGACCTGCCCGATTCCCCCCTACGTGCTGTCGATCCTACTACCACAACCCTCAGTCCAATCTAA
* * * * *
12173360 TCTTAGATTGGGAATGAACCCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGTTGAG
376 TCTTAGACTGGCAATGAACCCCGTATGCCTAAGCCAACCCATGAAACGACCGTGCGAGCGCTGAG
* * * *
12173425 CCGATCGAAAAGGCATAAAGTGCAAGCCAGGGATCAACCCGATCCCCCTCTGCGTGCTGTC
441 CCGACCGAAAAGGCATAAAGCGCAAGCCAGGGATCAACCCAATCCCCCTCTGCATGCTGTC
* * *
12173486 AGTCCCGCTGCCATAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
1 -GTCCTGCTGCCATAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* * *
12173551 GCCAACCAACGAAACGGGCGTGCGAGCGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGAGG
65 GCCAACCCACGAAACGGGCGTGCGAGCGCTCAGCCGACCGGAGAGGCAGAATACGCAAGCCGAGG
* * * * *
12173616 ATAGGCTCGATCCCCCCTGCGAGCTATCGATCCTGCTGCTGCAACCCTCGGTTCGGTCTGATCTT
130 ATCGGCTCGATCCCCCCTGCGTGCTACCGATCCTGCTGCTGCAACCCTCGGTCCAGTCTGATCTT
* * * * *
12173681 AGACTGGGAATGAACTCCGTATGCTTAGA-TTGGGGATGAACTCTGTATGCCTAAGTCAACCCAT
195 AGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAC
* ** * * ** * * **
12173745 GAAACGAGCGTGCAGGCGTTCAACCGATCGGAGCGGTAAAATGCGTAAGTCAGGGA-CTAGCTGG
259 GAAACGAGCGTACAGGCCCTCAACCGATCGAAGAGGTAAAATAAGCAAGCCAGGGACCT-GCCCG
* * **
12173809 A-TCCCCCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCAGTCCGGTCTAATCTTAGACTGGC
323 ATTCCCCCCTACGTGCTGTCGATCCTACTACCACAACCCTCAGTCCAATCTAATCTTAGACTGGC
** ** * * * * *
12173873 AATGAACTTCGTATGCCTAAGCCAACCCATGAATTGACCGTTCGGGTGCTGAGCCGACCGGAGAG
388 AATGAACCCCGTATGCCTAAGCCAACCCATGAAACGACCGTGCGAGCGCTGAGCCGACCGAAAAG
* * * *
12173938 GCATAATGCGCAAGCTAGGGATCAGCCCAATCCCCTTCTGCATGCTGTC
453 GCATAAAGCGCAAGCCAGGGATCAACCCAATCCCCCTCTGCATGCTGTC
* * * * *
12173987 GATCCTACTGCCACAACCCTTGGTCCGACTAAGGCTTAGACATGGAATGAACTACCTATGCCTAA
1 G-TCCTGCTGCCATAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* * * * * * *
12174052 GCCAACCCACGAAACGGACGTGTGGGTGCTCAGCCGACCGGAGAGGCAGAATCCACAAGCCGTGG
65 GCCAACCCACGAAACGGGCGTGCGAGCGCTCAGCCGACCGGAGAGGCAGAATACGCAAGCCGAGG
* * * * *
12174117 ATCGGCTTGATCCCCCTTACGTGCTACCGATCCTGCT-CTCGCAACCCTCGGTCCTGTCCGATCT
130 ATCGGCTCGATCCCCCCTGCGTGCTACCGATCCTGCTGCT-GCAACCCTCGGTCCAGTCTGATCT
* *
12174181 TAGACTAGGAATGAACTCCGTATGCTTAGAC-T--CATGAACTCTCGTATGCCTA
194 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTC-CGTATGCCTA
12174233 GTCACCCACG
Statistics
Matches: 628, Mismatches: 109, Indels: 33
0.82 0.14 0.04
Matches are distributed among these distances:
498 8 0.01
499 9 0.01
500 3 0.00
501 342 0.54
502 118 0.19
504 1 0.00
505 2 0.00
508 1 0.00
510 1 0.00
511 4 0.01
514 38 0.06
515 100 0.16
516 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (501 bp):
GTCCTGCTGCCATAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
CCAACCCACGAAACGGGCGTGCGAGCGCTCAGCCGACCGGAGAGGCAGAATACGCAAGCCGAGGA
TCGGCTCGATCCCCCCTGCGTGCTACCGATCCTGCTGCTGCAACCCTCGGTCCAGTCTGATCTTA
GACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
AACGAGCGTACAGGCCCTCAACCGATCGAAGAGGTAAAATAAGCAAGCCAGGGACCTGCCCGATT
CCCCCCTACGTGCTGTCGATCCTACTACCACAACCCTCAGTCCAATCTAATCTTAGACTGGCAAT
GAACCCCGTATGCCTAAGCCAACCCATGAAACGACCGTGCGAGCGCTGAGCCGACCGAAAAGGCA
TAAAGCGCAAGCCAGGGATCAACCCAATCCCCCTCTGCATGCTGTC
Found at i:12174131 original size:159 final size:159
Alignment explanation
Indices: 12173821--12174111 Score: 392
Period size: 159 Copynumber: 1.8 Consensus size: 159
12173811 CCCCCCTACG
* * * * *
12173821 TGCTGTCGATCCTACTGCCGCAACCCTCAGTCCGGTCTAATCTTAGACTGGCAATGAACTTCGTA
1 TGCTGTCGATCCTACTGCCACAACCCTCAGTCCGGACTAAGCTTAGACTGGCAATGAACTACCTA
* ** * * * *
12173886 TGCCTAAGCCAACCCATGAATTGACCGTTCGGGTGCTGAGCCGACCGGAGAGGCATAATGCGCAA
66 TGCCTAAGCCAACCCACGAACGGACCGTTCGGGTGCTCAGCCGACCGGAGAGGCAGAATCCACAA
12173951 GCTAGGGATCAGCCCAATCCCCTTCTGCA
131 GCTAGGGATCAGCCCAATCCCCTTCTGCA
**
12173980 TGCTGTCGATCCTACTGCCACAACCCTTGGTCC-GACTAAGGCTTAGACATGG-AATGAACTACC
1 TGCTGTCGATCCTACTGCCACAACCCTCAGTCCGGACTAA-GCTTAGAC-TGGCAATGAACTACC
12174043 TATGCCTAAGCCAACCCACGAAACGGA-CGTGT-GGGTGCTCAGCCGACCGGAGAGGCAGAATCC
64 TATGCCTAAGCCAACCCACG-AACGGACCGT-TCGGGTGCTCAGCCGACCGGAGAGGCAGAATCC
12174106 ACAAGC
127 ACAAGC
12174112 CGTGGATCGG
Statistics
Matches: 114, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
158 5 0.04
159 101 0.89
160 8 0.07
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.20
Consensus pattern (159 bp):
TGCTGTCGATCCTACTGCCACAACCCTCAGTCCGGACTAAGCTTAGACTGGCAATGAACTACCTA
TGCCTAAGCCAACCCACGAACGGACCGTTCGGGTGCTCAGCCGACCGGAGAGGCAGAATCCACAA
GCTAGGGATCAGCCCAATCCCCTTCTGCA
Found at i:12175089 original size:26 final size:26
Alignment explanation
Indices: 12175037--12175089 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12175027 CCGATCCGAT
*
12175037 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTTGGAATGAACTCCGCATG
* * *
12175063 CTTAGATTTGGGATGAACTTCGCATG
1 CTTAGACTTGGAATGAACTCCGCATG
12175089 C
1 C
12175090 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTTGGAATGAACTCCGCATG
Found at i:12175438 original size:158 final size:157
Alignment explanation
Indices: 12175234--12175673 Score: 501
Period size: 158 Copynumber: 2.8 Consensus size: 157
12175224 TCCGATAGAG
* * * *
12175234 GCTTAGTCATGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* *
12175299 CCGGTTGGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCAGCGTGCTGCCAATCC
66 CCGGTCGGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCAATCC
* * * *
12175364 TACTATCGCAACCCTCGATCCAATCTGA
131 CACTACCACAACCCTCGATCC-ACCTGA
* * * *
12175392 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
** * * * * * * * *
12175456 GCCGACCGAAGA-GTCATAATACGCAAGCCAGGGATCGACCCGATCCCCCTCTGCATGCTGTCGA
65 GCCGGTCGGAGAGGT-AGAATGCGCAAGTCGGGGATCGACCCGATCCCCC-CTGCGTGCTGCCAA
* * * *
12175520 TCCCGCTGCCACAACCCTCGGTCCACCTGG
128 TCCCACTACCACAACCCTCGATCCACCTGA
* * *
12175550 GCTTAGACATGGAATGAACTTCC-AATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAAC-TCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * *
12175614 GCCAGTCGGAGAGGTAGAATGCGCAAGTCGGGGATCAACTCGAT-CCCCCTGCGTGCTGCC
65 GCCGGTCGGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGCC
12175674 GCAACCCTCG
Statistics
Matches: 230, Mismatches: 46, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
156 10 0.04
157 7 0.03
158 179 0.78
159 34 0.15
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCAATCC
CACTACCACAACCCTCGATCCACCTGA
Found at i:12176457 original size:26 final size:26
Alignment explanation
Indices: 12176419--12176471 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12176409 GGCTCAAACT
*
12176419 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
12176445 CTTAGACAT-GGAATGAACTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
12176471 C
1 C
12176472 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Done.