Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 80 of 402
Found at i:12176631 original size:26 final size:26
Alignment explanation
Indices: 12176602--12176654 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12176592 TCGATCTGAT
*
12176602 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACTTGGG-ATGAACTCCGTATG
12176628 CTTAGACTTGGGATGAACTCCGTATG
1 CTTAGACTTGGGATGAACTCCGTATG
12176654 C
1 C
12176655 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTTGGGATGAACTCCGTATG
Found at i:12177716 original size:26 final size:26
Alignment explanation
Indices: 12177687--12177739 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12177677 CCAGTCCGAT
* * *
12177687 CTTAGATTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
12177713 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
12177739 C
1 C
12177740 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:12177959 original size:341 final size:340
Alignment explanation
Indices: 12177091--12177985 Score: 872
Period size: 343 Copynumber: 2.6 Consensus size: 340
12177081 CTCTGGAGAG
* * * *
12177091 GCCGGCCGGAGAGGCATAATGCACAAGCCACGGATCACCCTGGTTCCCCTCTATGTGCTGTCGAT
1 GCCGGCCGGAGAGGCATAATGCACAAGCGA-GGATCAACCT-GATCCCCTCT-CGTGC--TCGAT
* ** * * *
12177156 CCCGTTATCGGTCCTGCTACCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCG
61 CCCGCTGCCGGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCG
** * * * **
12177221 TATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCAC
126 TATGCCTAAGGTAACCCACGAAACGAGCGTGCGGGCGCTCAACCGG-TGGAGAGGCAGAATGCGT
* *
12177286 AAGCCGGGGATAGAGCCAGTCCCCAATGCATGCTACTGGTCCTACTGCCACAACCCTCAGTCCGA
190 AAGCCGGGGATCG-GCCAGGCCCCAATGCA-G---CTGG--C--CTGCCACAACCCTCAGTCCGA
* * **
12177351 TTCGATCTTAGATTGGGAGTGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGC
246 TCCGATCTTAGATTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCATATGCCTAAGC
* * *
12177416 CAACCCACAAAATGAGCGTTCGGGCGCTGA
311 CAACCCAAAAAACGAGCGTTCGGGCGCTCA
** * ** * *
12177446 GCCAACCGGAGAGGCATAATGCGCAAGCTGAGGATCGGCCCGGTCCCC-CTC-TG--CG-T---G
1 GCCGGCCGGAGAGGCATAATGCACAAGC-GAGGATCAACCTGATCCCCTCTCGTGCTCGATCCCG
* * * * * *
12177503 CTGCCAGTCCCGCTGCCACAACCCTCAGTCCAACTGGGGTTTAGACGTGGAATGAACTCCCTATG
65 CTGCCGGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATG
* * * * * *
12177568 CCTAA-GTCTACCCACAAAACGGGCGTGCGGGTGCTCAACCAGCTGGAGAGGCAAAATGCGTAAG
130 CCTAAGGT-AACCCACGAAACGAGCGTGCGGGCGCTCAACC-GGTGGAGAGGCAGAATGCGTAAG
* * * *
12177632 CCGGGGATCGGTTCGGGCCCC-ATGC-G-T-G-CTGCCACAACCTTCGGTCC-AGTCCGATCTTA
193 CCGGGGATCGG-CCAGGCCCCAATGCAGCTGGCCTGCCACAACCCTCAGTCCGA-TCCGATCTTA
* * * *
12177691 GATTGGTAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTCAACCCAAA
256 GATTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCAAA
12177755 AAACGAGC-TAT-GGGCGCTCA
320 AAACGAGCGT-TCGGGCGCTCA
12177775 GCCGGCCGGAGAGGCATAATGCACAAGTCGAGGATCAACCTGATCCCCTTCTGCGTGCAATCGAT
1 GCCGGCCGGAGAGGCATAATGCACAAG-CGAGGATCAACCTGATCCCC-TCT-CGTGC--TCGAT
* *
12177840 CCCGCTGCCGGTCCTGCTGCCACAATCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTTCG
61 CCCGCTGCCGGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCG
* * * * *
12177905 TATGCCTAAGGTAAACCATGAAACGAGCGTGCGGGCACTCAACCGGTAGGAGAGGTAGAATACGT
126 TATGCCTAAGGTAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGT-GGAGAGGCAGAATGCGT
12177970 AAGCCGGGGATCGGCC
190 AAGCCGGGGATCGGCC
12177986 CCTTACGTGC
Statistics
Matches: 440, Mismatches: 78, Indels: 59
0.76 0.14 0.10
Matches are distributed among these distances:
329 50 0.11
330 89 0.20
331 2 0.00
332 1 0.00
333 2 0.00
335 1 0.00
336 1 0.00
337 2 0.00
338 1 0.00
340 4 0.01
341 116 0.26
342 7 0.02
343 117 0.27
344 1 0.00
346 1 0.00
347 2 0.00
351 2 0.00
353 2 0.00
354 6 0.01
355 32 0.07
356 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (340 bp):
GCCGGCCGGAGAGGCATAATGCACAAGCGAGGATCAACCTGATCCCCTCTCGTGCTCGATCCCGC
TGCCGGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGC
CTAAGGTAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTGGAGAGGCAGAATGCGTAAGCCG
GGGATCGGCCAGGCCCCAATGCAGCTGGCCTGCCACAACCCTCAGTCCGATCCGATCTTAGATTG
GGAATGAACTCCATATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAAAAAACGA
GCGTTCGGGCGCTCA
Found at i:12178358 original size:159 final size:156
Alignment explanation
Indices: 12177843--12178474 Score: 564
Period size: 159 Copynumber: 4.0 Consensus size: 156
12177833 AATCGATCCC
* * * * *
12177843 GCTGCCGGTCCTGCTGCCACAATCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTTCGTAT
1 GCTGCCGGTCCCGCTGCCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAAC-TCCTAT
** * * * ** * * *
12177908 GCCTAAGGTAAACCATGAAACGAGCGTGCGGGCACTCAACCGGTAGGAGAGGTAGAATACGTAAG
65 GCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCA-AATGCGCAAG
* * *
12177973 CCGGGGATC-G---G--CCCCT-TACGT
129 CTGGGGATCGGCTCGATCCCCTCTGCAT
* * * * ** * * **
12177994 GCTGTCGATCCTGCTACCGTAACCCTTGGTCCGATCT-GATCTTAGAC-TGGGAATGAACTCCGT
1 GCTGCCGGTCCCGCTGCCACAACCCTCGGTCC-AACTGGGGCTTAGACAT-GGAATGAACTCC-T
* * * * *
12178057 ATGCCTAAGTCAAGCCATGAAACGAGCATGCGGGCGCTGAGTCGGCCGGAGAGGCATAATGCGCA
63 ATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCA-AATGCGCA
* * *
12178122 AGCCTCGGGATCGGCCCGATCCCCCTCTGCGT
127 AG-CTGGGGATCGGCTCGAT-CCCCTCTGCAT
* * * *
12178154 GCTGCCGGTCTCGCTGCCACAACCCTTGGTCCGACTGGGGCTTAGATATGGAATGAACTCACTAT
1 GCTGCCGGTCCCGCTGCCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTC-CTAT
* * * * *
12178219 GCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAACCGGTCGGAGAGGCAGAATGTGCAAG
65 GCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCA-AATGCGCAAG
* * *
12178284 CTGGGGATTGGCTCGGTCCTCCTCTGCCT
129 CTGGGGATCGGCTCGATCC-CCTCTGCAT
* * *
12178313 GCTGCCGGTCCCGTTGCCACAACCCTCGGTTCAACTGGGGCTTAGACATGGAATGAGCTCCCTAT
1 GCTGCCGGTCCCGCTGCCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACT-CCTAT
* * ** *
12178378 ACCTAAGCTAACAAATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAAATGCGTAA-C
65 GCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAAATGCGCAAGC
*
12178442 TCGAGGATCGGCTCGATCCCCTCTGCAT
130 T-GGGGATCGGCTCGATCCCCTCTGCAT
12178470 GCTGC
1 GCTGC
12178475 TGATCTTGCT
Statistics
Matches: 384, Mismatches: 79, Indels: 30
0.78 0.16 0.06
Matches are distributed among these distances:
150 3 0.01
151 95 0.25
152 9 0.02
153 1 0.00
156 1 0.00
157 15 0.04
158 23 0.06
159 130 0.34
160 105 0.27
161 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (156 bp):
GCTGCCGGTCCCGCTGCCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCTATG
CCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAAATGCGCAAGCT
GGGGATCGGCTCGATCCCCTCTGCAT
Found at i:12178805 original size:159 final size:158
Alignment explanation
Indices: 12178535--12178823 Score: 364
Period size: 159 Copynumber: 1.8 Consensus size: 158
12178525 AACTCCATAT
* * *
12178535 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
1 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCACTCAC
* ** *
12178600 CTGACCGAAAAGGTAGAATACGTAGGTCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATC
66 CCGACCGAAAAGGTAGAATACACAGGTCGAGGATCGGCCCGATCCCCC-CTGCGTGCTGCCGATC
12178665 CCGTTGACACAACCCTCGGTTCGGCTGGG
130 CCGTTGACACAACCCTCGGTTCGGCTGGG
* * * * *
12178694 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAATGGGCGTGTGGGCGCTCAA
1 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCACTC-A
* * * * * * ** *
12178759 CCCG-TCGAAGAGGTAGAATGCACATGTCGGGGATTGGCTTGATCCCCCCTGCGTGCTGTCGATC
65 CCCGACCGAAAAGGTAGAATACACAGGTCGAGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATC
12178823 C
130 C
12178824 TGCTATCGCA
Statistics
Matches: 108, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
158 16 0.15
159 89 0.82
160 3 0.03
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCACTCAC
CCGACCGAAAAGGTAGAATACACAGGTCGAGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCC
CGTTGACACAACCCTCGGTTCGGCTGGG
Found at i:12178841 original size:342 final size:343
Alignment explanation
Indices: 12178201--12179225 Score: 1116
Period size: 342 Copynumber: 3.0 Consensus size: 343
12178191 GGGCTTAGAT
* * * **
12178201 ATGGAATGAACTCAC-TATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAACCGGTCG
1 ATGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCG
* * * ** * * * * * * *
12178265 GAGAGGCAGAATGTGCAAG-CTGGGGATTGGCTCGGTCCTCCTCTGCCTGCTGCCGGTCCCGTTG
65 AAAAGGTAGAATACGTAAGTC-GAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATCCCGTTG
** * * * **
12178329 CCACAACCCTCGGTTCAACTGGGGCTTAGACATGGAATGAGCTCCCTATACCTAAGCTAACAAAT
129 CCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* ** * * * *
12178394 GAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCA-AATGCGTAACTCGAGGATCGGCTCGA
194 GAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGTCGGGGATTGGCTTGA
* * * *
12178458 TCCCCTCTGCATGCTG-CTGATCTTGCTACCGCAACCCTCGGTCT-GATCCGATCTTAGACTGGG
259 TCCCCCCTGCGTGCTGTC-GATCCTGCTATCGCAACCCTCGGTCTAG-TCCGATCTTAGACTGGG
*
12178521 AATGAACTCCATATGCTTACAC
322 AATGAACTCCAGATGCTTACAC
* *
12178543 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCTGACCGA
1 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGA
* *
12178608 AAAGGTAGAATACGTAGGTCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATCCCGTTGAC
66 AAAGGTAGAATACGTAAGTCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATCCCGTTGCC
*
12178673 ACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAA
131 ACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
* * * * * * * *
12178738 AATGGGCGTGTGGGCGCTCAACCCGTCGAAGAGGTAGAATGCACATGTCGGGGATTGGCTTGATC
196 AACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGTCGGGGATTGGCTTGATC
*
12178803 CCCCCTGCGTGCTGTCGATCCTGCTATCGCAA-CCTCGGTCTAGTCTGATCTTAGACTGGGAATG
261 CCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATG
*** *
12178867 AACTTTGGATGCTTAGAC
326 AACTCCAGATGCTTACAC
* *
12178885 -TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCA
1 AT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACC-
** ** * * *
12178949 GAGAGGTCGGTCGAAGAGGCATAATGCGTAAGTCGAGGATCAACCC-ATTCCCCTCTGTGTGCTG
64 GA-A--AAGGT---AGA---AT-A--CGTAAGTCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTG
** * * *
12179013 CCGATCTTGCTGCCACAACCCTCAGTTCGGCTGGGGCTTAGACATGGAATGAACT-CGTATGCCT
117 CCGATCCCGTTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
*
12179077 AAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGTCGG
182 AAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGTCGG
* * * * * * *
12179142 GGACTGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCACAACCCTCAGT-TCAGTCCAAT
247 GGATTGGCTTGATCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGGTCT-AGTCCGAT
*
12179206 CTTAGATTGGGAATGAACTC
311 CTTAGACTGGGAATGAACTC
12179226 TGTATGCCTA
Statistics
Matches: 570, Mismatches: 92, Indels: 30
0.82 0.13 0.04
Matches are distributed among these distances:
341 2 0.00
342 289 0.51
343 51 0.09
344 2 0.00
346 3 0.01
349 3 0.01
352 2 0.00
353 106 0.19
354 95 0.17
355 17 0.03
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (343 bp):
ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGA
AAAGGTAGAATACGTAAGTCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATCCCGTTGCC
ACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
AACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGTCGGGGATTGGCTTGATC
CCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATG
AACTCCAGATGCTTACAC
Found at i:12178904 original size:26 final size:26
Alignment explanation
Indices: 12178852--12178904 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12178842 CTAGTCTGAT
**
12178852 CTTAGACTGGGAATGAACTTTGGATG
1 CTTAGACTGGGAATGAACTCCGGATG
* *
12178878 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGGATG
12178904 C
1 C
12178905 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGGATG
Found at i:12179456 original size:159 final size:159
Alignment explanation
Indices: 12178998--12179549 Score: 537
Period size: 158 Copynumber: 3.5 Consensus size: 159
12178988 TCAACCCATT
* * * * * *
12178998 CCCCTCTGTGTGCTGCCGATCTTGCTGCCACAACCCTCAGTTCGGCTGGGGCTTAGACAT-GGAA
1 CCCCT-TGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGGTTGGAGCTTAGACATGGGAA
*
12179062 TGAACT-CGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGC
65 TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGC
* * *
12179126 AGAATGCACAAGTCGGGGA-CTGGCCTGGTC
130 AGAATGCGCAAGCCGGGGATC-AGCCTGGTC
* * * * *** * *
12179156 CCCCCTGCGTGCTGTCGATCCTGCTGTCACAACCCTCAGTTCAGTCCAATCTTAGA-TTGGGAAT
1 CCCCTTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGGTTGGAGCTTAGACATGGGAAT
* ** * * * * *
12179220 GAACTCTGTATGCCTAATTCAACCCACGAAACAAGCGTGCGGGCGCTGAGCC-AGTCGGAGAAGC
66 GAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGA-TCGGAGAGGC
* ** * * * ***
12179284 ATAATATGTAAGCCAGAGATCAGCCCAATC
130 AGAATGCGCAAGCCGGGGATCAGCCTGGTC
* * *
12179314 CCCCTTTGCATGCTGTCGAACCTGCTGCCACAACCCTC-GATCCGGTTGGGGCTTAGACAT-GGA
1 CCCC-TTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAG-TCCGGTTGGAGCTTAGACATGGGA
* * * *
12179377 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGACCGTAGAGG
64 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGG
* *
12179442 TAGAATGCGCAAGCCGGGGATCAGACTGGTC
129 CAGAATGCGCAAGCCGGGGATCAGCCTGGTC
* * * * *
12179473 CCCCTTACGTGTTGTCGATCTTGCTGCCACAACCCTC-GATCCGGTTAGATCTTAGAC-TGGGAA
1 CCCCTTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAG-TCCGGTTGGAGCTTAGACATGGGAA
12179536 TGAACTCCGTATGC
65 TGAACTCCGTATGC
12179550 TTAGACTGGG
Statistics
Matches: 307, Mismatches: 78, Indels: 18
0.76 0.19 0.04
Matches are distributed among these distances:
156 1 0.00
157 51 0.17
158 135 0.44
159 118 0.38
160 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (159 bp):
CCCCTTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGGTTGGAGCTTAGACATGGGAAT
GAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGCA
GAATGCGCAAGCCGGGGATCAGCCTGGTC
Found at i:12179552 original size:26 final size:26
Alignment explanation
Indices: 12179523--12179573 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12179513 CCGGTTAGAT
12179523 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12179549 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
12179574 CCCTAAGTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12179748 original size:26 final size:26
Alignment explanation
Indices: 12179719--12179771 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12179709 CTGATCCGAT
12179719 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
12179745 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
12179771 C
1 C
12179772 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:12179877 original size:196 final size:196
Alignment explanation
Indices: 12179496--12179861 Score: 464
Period size: 196 Copynumber: 1.9 Consensus size: 196
12179486 GTCGATCTTG
* * *
12179496 CTGCCACAACCCTCGATCCGGTTAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
1 CTGCCACAACCCTCGATCCGATCAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
** * ** * *
12179561 ATGAACTCCGTATCCCTAAGTTAACCCATGAAATGAGTATACGGGCACTCAGTCGACCGGAGAGG
66 ATGAACTCCGTATCCCTAAGCCAACCCACGAAATGAACATACAGGCACTCAGTCGACCGAAGAGG
** ** *
12179626 CAAAATGCACAAGCTGGGGATTGACCCGGTCCCCCCTGCGGGCTACCGATCCTGCTACTGGTCCT
131 CAAAATGCACAAGCCAGGGACCGACCCGATCCCCCCTGCGGGCTACCGATCCTGCTACTGGTCCT
12179691 A
196 A
* * *
12179692 CTGCCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GG
1 CTGCCACAACCCTCGATCCGATCAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGG
* * * * *
12179756 AATGAACTCCGTATGCCTAAGCCAACTCACGAAATGAACGTGCAGGCACTCAGTCGATCGAAGAG
65 AATGAACTCCGTATCCCTAAGCCAACCCACGAAATGAACATACAGGCACTCAGTCGACCGAAGAG
* * ** *
12179821 GTAGAATGCGTAAGCCAGGGACCGGCCCGATCCCCCCTGCG
130 GCAAAATGCACAAGCCAGGGACCGACCCGATCCCCCCTGCG
12179862 TGCTGTCCAT
Statistics
Matches: 141, Mismatches: 28, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
196 140 0.99
197 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.20
Consensus pattern (196 bp):
CTGCCACAACCCTCGATCCGATCAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
ATGAACTCCGTATCCCTAAGCCAACCCACGAAATGAACATACAGGCACTCAGTCGACCGAAGAGG
CAAAATGCACAAGCCAGGGACCGACCCGATCCCCCCTGCGGGCTACCGATCCTGCTACTGGTCCT
A
Found at i:12180255 original size:26 final size:25
Alignment explanation
Indices: 12180219--12180270 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
12180209 CCGGTTTGAT
12180219 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGG-ATGAACTTC-GTATG
12180245 CTTAGACTGGGATGAACTTCGTATG
1 CTTAGACTGGGATGAACTTCGTATG
12180270 C
1 C
12180271 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 12 0.48
26 13 0.52
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTTCGTATG
Found at i:12180268 original size:25 final size:26
Alignment explanation
Indices: 12180219--12180270 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
12180209 CCGGTTTGAT
12180219 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
12180245 CTTAGACTGGG-ATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
12180270 C
1 C
12180271 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 1 0.04
25 13 0.52
26 11 0.44
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:12180426 original size:697 final size:677
Alignment explanation
Indices: 12178545--12180524 Score: 1904
Period size: 697 Copynumber: 2.9 Consensus size: 677
12178535 GCTTACACAT
** ** * * * *
12178545 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG-CTGACCGAA
1 GGAATGAACTCCGTATGCCTAATTCAACCCACGAAACAAGCGTGCGGGCGCTGAGCCAG-TCGAA
* * * * *
12178609 -AAGGTAGAATACGTAGGTC-GAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATCCCG-TTG
65 GAA-GCATAATACGCAAGCCAG-GGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATCCCGCTT-
* *
12178671 ACACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
127 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * * * * * * * *
12178736 AAAATGGGCGTGTGGGCGCTCAACCCGTCGAAGAGGTAGAATGCACATGTCGGGGATTGGCTTGA
192 GAAA-CGGCGTGCGGGCGCTCAGCCGGTCGAAGAGGTAGAATGCGCAAGTCGGGGATCGACCTGA
* * * ** *
12178801 TCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCTCGGTCTAGTCTGATCTTAGACTGGGAAT
256 TCCCCCATGCGTGCTGTCGATCCTGCTGTCGCAACCTCGATCCGGTTTGATCTTAGACTGGGAAT
* * * * *
12178866 GAACTTTGGATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
321 GAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCTTA
* *
12178931 CGGGCACTCAGCCGACC-AGAGAGGTCGGTCGAAGAGGCATAATGCGTAAGTCGAGGATCA-ACC
386 CGGGCACTCAGTCGACCGA-AGAGG-CAGTCGAAGAGGCATAATGCGTAAG-CGAGGATCAGACC
* * * *
12178994 CATTCCCCTC--TGTG-TGC--T--GC--CGATCTTGCTGCCACAACCCTC-AGTTCGGCTGGGG
448 GA-TCCCCTCTGTGTGCTGCGATCCGCTACGATCTTACTGCCACAACCCTCGA-TCCGACTGGGG
* * *
12179049 CTTAGACATGGAATGAACT-CGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
511 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGTGCTCAGT
* * * ** * * * * * *
12179113 CGGTCGGAGAGGCAGAATGCACAAGTCGGGGACTGGCCTGGTCCCCCCTGCGTGCTGTCGATCCT
576 CGATCGAAGAGGTAGAATGCGTAAGCCAGGGACCGGCCCGATCCCCCCTGCGTGCTGTCCATCCT
* *
12179178 GCTGTCACAACCCTCAGTTCAGTCCAATCTTAGATTG
641 GCTGCCACAACCCTCAGTTCAGTCCAATCTTAGAATG
* *
12179215 GGAATGAACTCTGTATGCCTAATTCAACCCACGAAACAAGCGTGCGGGCGCTGAGCCAGTCGGAG
1 GGAATGAACTCCGTATGCCTAATTCAACCCACGAAACAAGCGTGCGGGCGCTGAGCCAGTCGAAG
* * * * ** * * * * * *
12179280 AAGCATAATATGTAAGCCAGAGATCAGCCCAATCCCCCTTTGCATGCTGTCGAACCTGCTGCCAC
66 AAGCATAATACGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATCCCGCTTCCAC
* *
12179345 AACCCTCGATCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
131 AACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
* ** * * *
12179410 CGGGCGTGCGGGTGCTCAGCCGACCGTAGAGGTAGAATGCGCAAGCCGGGGATCAGA-CTGGTCC
196 C-GGCGTGCGGGCGCTCAGCCGGTCGAAGAGGTAGAATGCGCAAGTCGGGGATC-GACCTGATCC
* * * * * * *
12179474 CCCTTACGTGTTGTCGATCTTGCTGCCACAACCCTCGATCCGGTTAGATCTTAGACTGGGAATGA
259 CCCATGCGTGCTGTCGATCCTGCTGTCGCAA-CCTCGATCCGGTTTGATCTTAGACTGGGAATGA
* * * *
12179539 ACTCCGTATGCTTAGACTGGGGATGAACTCCGTATCCCTAAGTTAACCCATGAAATGAG-TATAC
323 ACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCT-TAC
* * * * *
12179603 GGGCACTCAGTCGACCGGAGAGGCA----AA-ATGCACAA-GC-T--G-G-GGAT-TGACCCGGT
387 GGGCACTCAGTCGACCGAAGAGGCAGTCGAAGAGGCATAATGCGTAAGCGAGGATCAGA-CCGAT
* * * * * *
12179656 CCCCCCTGCGGGCTACCGATCCTGCTACTGGTCCTACTGCCACAACCCTCGGTCTGATCCGATCT
451 CCCCTCTGTGTGCT-GCGATCC-GCTAC-GATCTTACTGCCACAA-CC-C--TC-GAT-C---C-
* *
12179721 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCAC
503 --GACT--G---G------G---GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* **
12179786 GAAATGAACGTGCAGGCACTCAGTCGATCGAAGAGGTAGAATGCGTAAGCCAGGGACCGGCCCGA
552 GAAATGAGCGTGCAGGTGCTCAGTCGATCGAAGAGGTAGAATGCGTAAGCCAGGGACCGGCCCGA
* * * **
12179851 TCCCCCCTGCGTGCTGTCCATCCTGCTGCCGCAACCCTC-GGTCTGGTCTGATCTTAGAATG
617 TCCCCCCTGCGTGCTGTCCATCCTGCTGCCACAACCCTCAGTTC-AGTCCAATCTTAGAATG
* * * * * *
12179912 GGAATGAACTCCGTATGCCTAAGTT-AACCCACGAAACGAGGGTTCGGTCGTTGAGCCGGTCGAA
1 GGAATGAACTCCGTATGCCTAA-TTCAACCCACGAAACAAGCGTGCGGGCGCTGAGCCAGTCGAA
* * ** * * * *
12179976 GAGGCATAATGCGCAAGCTGGGGATCGGCCTGGTCCCTCTCTACGTGCTGCCGGTCCCGCTTCCA
65 GAAGCATAATACGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATCCCGCTTCCA
* *
12180041 TAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
130 CAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
* * * * * * * *
12180106 ACGGCGTGCGGGCGCTCAGTCGGTCGGAGAAGCAGAATGTGTAAGTCAGGGATCGACCCGATCCC
195 ACGGCGTGCGGGCGCTCAGCCGGTCGAAGAGGTAGAATGCGCAAGTCGGGGATCGACCTGATCCC
* *
12180171 CCATGCGTGCTGCCGATCCGGCTGTCGCAACCTTCGATCCGGTTTGATCTTAGACTGGGAATGAA
260 CCATGCGTGCTGTCGATCCTGCTGTCGCAACC-TCGATCCGGTTTGATCTTAGACTGGGAATGAA
* *
12180236 CTCTGTATGCTTAGACT-GGGATGAACTTCGTATGCCTAAGTCAACCCACGAAATAAGCTTACGG
324 CTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCTTACGG
* * **
12180300 ACACTCAGTCGGCCGAAGAGGCCAGTCGAAGAGGCATAATGCGTAAGCCGAGGATCAGTTCGATC
389 GCACTCAGTCGACCGAAGAGG-CAGTCGAAGAGGCATAATGCGTAAG-CGAGGATCAGACCGATC
*
12180365 CCCTTCTGTGTGCTGTCGATCCCGCTATCGATCTTACTGCCACCACCCTCGATCCGACTGGGGCT
452 CCC-TCTGTGTGCTG-CGAT-CCGCTA-CGATCTTACTGCCACAACCCTCGATCCGACTGGGGCT
* *
12180430 TAGACATGGAATGAACTCTGTATGCCTACGCCAACCCATGAAATGAGCGTGCAGGTGCTCAGTCG
513 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGTGCTCAGTCG
* *
12180495 ATTGAAGAGGTAGAATGCGTAAGCTAGGGA
578 ATCGAAGAGGTAGAATGCGTAAGCCAGGGA
12180525 TCGACTCGTC
Statistics
Matches: 1042, Mismatches: 194, Indels: 135
0.76 0.14 0.10
Matches are distributed among these distances:
658 11 0.01
659 3 0.00
660 2 0.00
661 2 0.00
662 1 0.00
663 1 0.00
664 3 0.00
665 6 0.01
666 2 0.00
667 2 0.00
669 1 0.00
670 239 0.23
671 111 0.11
672 1 0.00
674 2 0.00
675 1 0.00
676 1 0.00
679 1 0.00
682 3 0.00
683 89 0.09
684 1 0.00
686 1 0.00
687 1 0.00
692 1 0.00
693 1 0.00
695 63 0.06
696 142 0.14
697 282 0.27
698 2 0.00
700 3 0.00
701 6 0.01
702 2 0.00
703 2 0.00
704 3 0.00
705 3 0.00
707 2 0.00
708 13 0.01
709 29 0.03
710 3 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (677 bp):
GGAATGAACTCCGTATGCCTAATTCAACCCACGAAACAAGCGTGCGGGCGCTGAGCCAGTCGAAG
AAGCATAATACGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATCCCGCTTCCAC
AACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
CGGCGTGCGGGCGCTCAGCCGGTCGAAGAGGTAGAATGCGCAAGTCGGGGATCGACCTGATCCCC
CATGCGTGCTGTCGATCCTGCTGTCGCAACCTCGATCCGGTTTGATCTTAGACTGGGAATGAACT
CTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCTTACGGGC
ACTCAGTCGACCGAAGAGGCAGTCGAAGAGGCATAATGCGTAAGCGAGGATCAGACCGATCCCCT
CTGTGTGCTGCGATCCGCTACGATCTTACTGCCACAACCCTCGATCCGACTGGGGCTTAGACATG
GAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGTGCTCAGTCGATCGAAGA
GGTAGAATGCGTAAGCCAGGGACCGGCCCGATCCCCCCTGCGTGCTGTCCATCCTGCTGCCACAA
CCCTCAGTTCAGTCCAATCTTAGAATG
Found at i:12183548 original size:13 final size:13
Alignment explanation
Indices: 12183530--12183555 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
12183520 TTTCCACCAA
12183530 TTATTTGATCTAC
1 TTATTTGATCTAC
12183543 TTATTTGATCTAC
1 TTATTTGATCTAC
12183556 ACGTCTAGCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.08, T:0.54
Consensus pattern (13 bp):
TTATTTGATCTAC
Found at i:12188247 original size:25 final size:26
Alignment explanation
Indices: 12188213--12188264 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
12188203 GTTGACTTAG
12188213 GCATACGGAGTTCATCCCCA-TCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12188238 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12188264 G
1 G
12188265 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12188576 original size:26 final size:26
Alignment explanation
Indices: 12188546--12188596 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12188536 GTTGGCTTAG
12188546 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
12188572 GCATATGGAGTTCATTCCTAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
12188597 GGATCAGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12188798 original size:343 final size:333
Alignment explanation
Indices: 12188104--12188915 Score: 1033
Period size: 343 Copynumber: 2.4 Consensus size: 333
12188094 CACCAACTAC
* * *
12188104 GGCAGCGGGACC-GCTA-CACGTAGAGGGGTACCGGACCGATCCCCGACTTGCGCATTATGCCTC
1 GGCAGCGGGACCAGC-AGCACGTAGAGGGGGACCGGGCCGATCCCTGACTTGCGCATTATGCCTC
* * *
12188167 TTCGGCCGACTCAGTGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCC
65 TTCGGTCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCC
12188232 ATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGACAGCAGCA
130 ATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGACAGCAGCA
* * * * * * * * *
12188297 CTCAGTGGGGACCAGGTCGATCCTCGGCTTGCGCATTCTACCTGTCCGATATGCTGGGTGCCCGC
195 CGCAGTGGGGACCAGGCCGATCCTCGACTTACGCATTCTACCTCTCCGACAGGCTGAGCGCCCGC
*
12188362 ATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
260 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
*
12188427 AAGGGTTGT
325 AAGGGTTAT
* *
12188436 GGCAGCGGGA-CAGGCAGCACGTAGAGGGGGACCGGGCCGATCCCTGACTTGCCCATTCTGCCTC
1 GGCAGCGGGACCA-GCAGCACGTAGAGGGGGACCGGGCCGATCCCTGACTTGCGCATTATGCCTC
* * *
12188500 TTCGGTCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCC
65 TTCGGTCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCC
* * * * *
12188565 AGTCTAAGCATATGGAGTTCATTCCTAGTCTAGGATCAGACCAGATCGAGGGTTGCGGTAACAGG
130 A-TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGC-G--AC---
* * * * *
12188630 ATCGGCAGCACGCAAG-GGGGATCGGGCCGATCC-CTGACTTACGCATTCTGCCTCTCCGGCCGG
188 A---GCAGCACGC-AGTGGGGACCAGGCCGATCCTC-GACTTACGCATTCTACCTCTCCGACAGG
12188693 CTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
248 CTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
* * * *
12188758 CCTAGTCGGATCGAGGGTTAT
313 CCCAGCCGGACCAAGGGTTAT
* * * *
12188779 GGCAGCTGGACCAGCAGCACGCAGAGAGGGACCGGGCTGATCCCT-AGCTTGCGCATTATGCCTC
1 GGCAGCGGGACCAGCAGCACGTAGAGGGGGACCGGGCCGATCCCTGA-CTTGCGCATTATGCCTC
* * * *
12188843 TTCGGTCGGCTCATTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATATGGAGTTCTTTCCC
65 TTCGGTCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC-ATCCC
*
12188908 AATCTAAG
129 CATCTAAG
12188916 ATCGGATCGG
Statistics
Matches: 412, Mismatches: 50, Indels: 25
0.85 0.10 0.05
Matches are distributed among these distances:
331 1 0.00
332 11 0.03
333 104 0.25
334 49 0.12
335 1 0.00
337 2 0.00
340 1 0.00
342 2 0.00
343 232 0.56
344 9 0.02
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (333 bp):
GGCAGCGGGACCAGCAGCACGTAGAGGGGGACCGGGCCGATCCCTGACTTGCGCATTATGCCTCT
TCGGTCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGACAGCAGCAC
GCAGTGGGGACCAGGCCGATCCTCGACTTACGCATTCTACCTCTCCGACAGGCTGAGCGCCCGCA
CGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCA
AGGGTTAT
Found at i:12188873 original size:159 final size:157
Alignment explanation
Indices: 12188634--12189073 Score: 444
Period size: 159 Copynumber: 2.8 Consensus size: 157
12188624 AACAGGATCG
* * * * *
12188634 GCAGCACGCA-AGGGGGATCGGGCCGATCCCTGACTTACGCATTCTGCCTCTCCGGCCGGCTGAG
1 GCAGCACGCAGAGGGGGACCGGGCTGATCCCTG-CTTACGCATTATGCCTCTTCGGTCGGCTGAG
*
12188698 CGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG
65 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC-AG
* **
12188763 -TCGGATCGAGGGTTATGGCAGCTGGACC
129 ATCGGACCGAGGGTTATGGCAGCAAGACC
* * *
12188791 AGCAGCACGCAGAGAGGGACCGGGCTGATCCCTAGCTTGCGCATTATGCCTCTTCGGTCGGCTCA
1 -GCAGCACGCAGAGGGGGACCGGGCTGATCCCT-GCTTACGCATTATGCCTCTTCGGTCGGCTGA
** * * * * * ** *
12188856 TTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATATGGAGTTCTTTCCCA-ATCTAAGATCG
64 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCA
* * *
12188920 GATCGGACCGAGGTTTGTGGCAGCAAGATC
128 GATCGGACCGAGGGTTATGGCAGCAAGACC
* * * * * * *
12188950 GATAGCACGCAG-GGGGGACTGGG-TCAATCCCCGGCTTACGGATTTTACCTC-TCTGGTCGGCT
1 G-CAGCACGCAGAGGGGGACCGGGCT-GAT-CCCTGCTTACGCATTATGCCTCTTC-GGTCGGCT
* *
12189012 GAGCGCCTGCACGCTCGTTTTGT-GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
62 GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
12189074 ATACGGAGTT
Statistics
Matches: 228, Mismatches: 45, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
156 3 0.01
157 32 0.14
158 63 0.28
159 126 0.55
160 4 0.02
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.25
Consensus pattern (157 bp):
GCAGCACGCAGAGGGGGACCGGGCTGATCCCTGCTTACGCATTATGCCTCTTCGGTCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGAT
CGGACCGAGGGTTATGGCAGCAAGACC
Found at i:12189082 original size:26 final size:26
Alignment explanation
Indices: 12189046--12189098 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12189036 GTTGGCTTAG
*
12189046 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12189072 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12189098 G
1 G
12189099 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12190119 original size:159 final size:159
Alignment explanation
Indices: 12189937--12190294 Score: 377
Period size: 159 Copynumber: 2.2 Consensus size: 159
12189927 CTGTTTCATC
* * * * *
12189937 GGTTGGCTTAGTCATAGGGAGTTCATTCCATGTCTACG-TCCCAGTCAGA-TCGAGGGTTGTGGT
1 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCCCACT-AGACT-GAGGGTTGTGGC
* * *
12190000 AGCAGGACCGACAGCACGCAGAGAGGGACCGGGCCAATTCCCAGCTTGCATATTTTACCTCTTCG
64 AGCAGGACCGACAGCACGCAG-GAGGGACCGGGCC-ATCCCCAGCTTGCACATTCTACCTCTTCG
*
12190065 ATCTG-CTCAGTG-CC-CGCATGCTCGTTTCGTG
127 ATC-GACTCAGCGCCCACGCATGCTCGTTTCGTG
* * ** *
12190096 GGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATCGGACTGGACTGAGGGTTGTGGCA
1 GGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCCCACTAGACTGAGGGTTGTGGCA
* * * * * * * * * *
12190160 GTAGGATCGATAGCACGTAGGGGGGATCGGGTCATCCCCGGCTTGCGCATTCTGCCTCTTCGATC
65 GCAGGACCGACAGCACGCAGGAGGGACCGGGCCATCCCCAGCTTGCACATTCTACCTCTTCGATC
*
12190225 GACTGAGCGCCCGTACGCATGCTCGTTTCGTG
130 GACTCAGCGCCC--ACGCATGCTCGTTTCGTG
12190257 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
12190295 CATACAGAGT
Statistics
Matches: 163, Mismatches: 27, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
156 1 0.01
157 31 0.19
158 12 0.07
159 59 0.36
160 11 0.07
161 49 0.30
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.27
Consensus pattern (159 bp):
GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCCCACTAGACTGAGGGTTGTGGCAG
CAGGACCGACAGCACGCAGGAGGGACCGGGCCATCCCCAGCTTGCACATTCTACCTCTTCGATCG
ACTCAGCGCCCACGCATGCTCGTTTCGTG
Found at i:12190297 original size:26 final size:26
Alignment explanation
Indices: 12190268--12190320 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12190258 GTTGGCTTAG
*
12190268 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12190294 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12190320 G
1 G
12190321 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12190659 original size:26 final size:26
Alignment explanation
Indices: 12190623--12190675 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12190613 GTTGACTTAG
*
12190623 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
12190649 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12190675 G
1 G
12190676 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12190971 original size:138 final size:137
Alignment explanation
Indices: 12190709--12190971 Score: 307
Period size: 138 Copynumber: 1.9 Consensus size: 137
12190699 GCTGCAAGAT
* * * * *
12190709 CGACAGCACGCAGGGGGGACCAGGCTGATCCCCGGCTTGAGCATTCTGCCTCTTTGGGCGGCTGA
1 CGACAGCACGCAGAGGGGACCAGGCTGATCCCCGACTTGAGCATTATGCCTCTTTGGGCAGCTCA
* * *
12190774 GCCCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
66 GCACCCGCACGCCCATTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
12190839 GCAGGAC
131 GCAGGAC
* * * *
12190846 CGACAGCACGTAGAAGGGGACCGGGCTGATCCCCGACTTGCGTATTATGCCTCTTT-GGCTAGCT
1 CGACAGCACGCAG-AGGGGACCAGGCTGATCCCCGACTTGAGCATTATGCCTCTTTGGGC-AGCT
* * * * * *
12190910 CAGCACCTGTACGCTCATTTCGTGTGTTGACTTATGCAT-GCGGAGTTCATTCACA-GTCTAAG
64 CAGCACCCGCACGCCCATTTCATGGGTTGACTTAGGCATAG-GGAGTTCATTC-CATGTCTAAG
12190972 ATCAGACCGG
Statistics
Matches: 104, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
137 16 0.15
138 86 0.83
139 2 0.02
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (137 bp):
CGACAGCACGCAGAGGGGACCAGGCTGATCCCCGACTTGAGCATTATGCCTCTTTGGGCAGCTCA
GCACCCGCACGCCCATTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
GCAGGAC
Found at i:12191267 original size:480 final size:483
Alignment explanation
Indices: 12190430--12191676 Score: 1325
Period size: 480 Copynumber: 2.5 Consensus size: 483
12190420 CGGTCGGTTG
* * * **
12190430 AGCACCCGCACGCTCATTTCGT-TGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCC
1 AGCACCCGCACGCTCATTTCGTGT-GTTGACTTATGCATACGGAGTTCATTCCA-GTCTAAG-AT
* ** * * **
12190494 CAG-CCAGACTAAGGGTTGTGGCAGCAAGATCGACAGCATGCAGAGGGGGACCAAG-CTGATCCC
63 CAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCATGC--AGGGGGATCGGGTC-GATCCC
* * * * * * *
12190557 CAGCTTGCGCATTATGCCTCTCCGGCCAGCTGAGTGCCTGCACGCTCGTTTAATGGGTTGACTTA
125 CGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTA
* *
12190622 GGCATATGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
190 GGCATA-CGAGTTCATCCCCAGTCTAAGCATA-GGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * * * *
12190687 CCGAGGGTTACGGCTGCAAGATCGACAGCACGCAGGGGGGACCAGGCTGATCCCCGGCTTGAGCA
253 CTGAGGGTTGCGACAGCAAGATCGACAGCACGCAGGGGGGACCAGGCTAATCCCCGGCTTGAGAA
* * * *
12190752 TTCTGCCTCTTTGGGCGGCTGAGCCCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAG
318 TTCTACCTCTTTGGGCGGCTGAACCCCCGCACGCCCGTTTCATGAGTTGGCTTAGGCATAAGGAG
* *
12190817 TTCATTCCATGTCTAAGCCCCAG-CAG-G-A-C-C-GA-CAGCACGTAGAAGGGGACCGGGCTGA
383 TTCATTCCATGTCTAAGCCCCAGCCAGCGAAGCACGGAGCAGCACGCAGAAGGGGACCGGGCTAA
* * *
12190875 TCCCCGACTTGCGTATTATGCCTCTTTGGCTAGCTC
448 TCCCCGACTTGCGTATTATACCTCTTCGGCCAGCTC
* * *
12190911 AGCACCTGTACGCTCATTTCGTGTGTTGACTTATGCATGCGGAGTTCATTCACAGTCTAAGATCA
1 AGCACCCGCACGCTCATTTCGTGTGTTGACTTATGCATACGGAGTTCATTC-CAGTCTAAGATCA
* *
12190976 GACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCATGCAGGAGGGATCGGGTCGATCCCCGGC
65 GACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGG-GGGATCGGGTCGATCCCCGGC
* * * * *
12191041 TTGCACATTTTGCCTCTCCGATCGGCTGACCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
129 TTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCA
12191106 TACAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGA
194 TAC-GAGTTCATCCCCAGTCTAAGCATA-GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGA
* * * * * * *
12191171 GGGTTGCGACAGTAGGATCGGCAGCATGCAGGGGGGATCGGGCTAATCCTCGGCTTGCA-AATTC
257 GGGTTGCGACAGCAAGATCGACAGCACGCAGGGGGGACCAGGCTAATCCCCGGCTTG-AGAATTC
* * * * * *
12191235 TACCTCTCTT-GTCGGCTGAACGCTCGCACGCCCGTTTCATGAGTTGGTTTATGTATAAGGAGTT
321 TACCTCT-TTGGGCGGCTGAACCCCCGCACGCCCGTTTCATGAGTTGGCTTAGGCATAAGGAGTT
*
12191299 CATTCCATGTCTAAGCCCCAGCCAGACCGAAGGTTGTGGCAGCGGGATGGGCAGCACGCAGAGGG
385 CATTCCATGTCTAAGCCCCAGCCAG--CGAA-------GCA-C-GGA---GCAGCACGCAGAAGG
* * * *
12191364 GGACTGGGCTAATCCTCGGCTTGCGTATTATACCTCTTCGGCCGGCTC
436 GGACCGGGCTAATCCCCGACTTGCGTATTATACCTCTTCGGCCAGCTC
* * * * **
12191412 AACGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCTCAGTCTATGATTG
1 AGCACCCGCACGCTCATTTCGTGTGTTGACTTATGCATACGGAGTTCATTC-CAGTCTAAGATCA
* * *** **
12191477 GACCGGACCGAGGGTTGTGGTAGCAGGATCAACAGCACATAGGGGTGATCGGGTCGATTTCCGGC
65 GACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGGGG-GATCGGGTCGATCCCCGGC
* * * * * *
12191542 TTACGCATTCTGCCTCTCCGGTCGACTGAGCGTCCGCACGCTTATTTCATGGGTTGGCTTAGGCA
129 TTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCA
* * *
12191607 TACGAAGTTCAT-TCCATGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCAGATCGGA-TCG
194 TACG-AGTTCATCCCCA-GTCTAAGCATAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-G
12191670 AGGGTTG
256 AGGGTTG
12191677 TGGTAACAGG
Statistics
Matches: 636, Mismatches: 97, Indels: 47
0.82 0.12 0.06
Matches are distributed among these distances:
479 3 0.00
480 254 0.40
481 89 0.14
482 3 0.00
484 1 0.00
485 1 0.00
493 1 0.00
495 1 0.00
497 2 0.00
499 1 0.00
500 44 0.07
501 236 0.37
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (483 bp):
AGCACCCGCACGCTCATTTCGTGTGTTGACTTATGCATACGGAGTTCATTCCAGTCTAAGATCAG
ACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGGGGGATCGGGTCGATCCCCGGCTT
GCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATA
CGAGTTCATCCCCAGTCTAAGCATAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGT
TGCGACAGCAAGATCGACAGCACGCAGGGGGGACCAGGCTAATCCCCGGCTTGAGAATTCTACCT
CTTTGGGCGGCTGAACCCCCGCACGCCCGTTTCATGAGTTGGCTTAGGCATAAGGAGTTCATTCC
ATGTCTAAGCCCCAGCCAGCGAAGCACGGAGCAGCACGCAGAAGGGGACCGGGCTAATCCCCGAC
TTGCGTATTATACCTCTTCGGCCAGCTC
Found at i:12191300 original size:184 final size:184
Alignment explanation
Indices: 12190951--12191314 Score: 466
Period size: 184 Copynumber: 2.0 Consensus size: 184
12190941 TTATGCATGC
12190951 GGAGTTCATTCACAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCATGC
1 GGAGTTCATTCACAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCATGC
* * * * *
12191016 AGGAGGGATCGGGTCGATCCCCGGCTTGCACATTTTGCCTCTCCGATCGGCTGACCGCCCGCACG
66 AGGAGGGATCGGGTCAATCCCCGGCTTGCAAATTCTACCTCTCCGATCGGCTGAACGCCCGCACG
* * *
12191081 CTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATAT
131 CCCATTTCATGAGTTGACTTAGGCATACAGAGTTCAT-CCCATGTCTAAGCATAT
* * * *
12191135 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGTAGGATCGGCAGCATGC
1 GGAGTTCATTCACAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCATGC
* * * *
12191200 AGGGGGGATCGGG-CTAATCCTCGGCTTGCAAATTCTACCTCTCTTG-TCGGCTGAACGCTCGCA
66 AGGAGGGATCGGGTC-AATCCCCGGCTTGCAAATTCTACCTCTC-CGATCGGCTGAACGCCCGCA
* ** * * *
12191263 CGCCCGTTTCATGAGTTGGTTTATGTATA-AGGAGTTCATTCCATGTCTAAGC
129 CGCCCATTTCATGAGTTGACTTAGGCATACA-GAGTTCATCCCATGTCTAAGC
12191315 CCCAGCCAGA
Statistics
Matches: 154, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
183 5 0.03
184 148 0.96
185 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (184 bp):
GGAGTTCATTCACAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCATGC
AGGAGGGATCGGGTCAATCCCCGGCTTGCAAATTCTACCTCTCCGATCGGCTGAACGCCCGCACG
CCCATTTCATGAGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCATAT
Found at i:12191493 original size:159 final size:157
Alignment explanation
Indices: 12191129--12191529 Score: 394
Period size: 159 Copynumber: 2.5 Consensus size: 157
12191119 CCCAGTCTAA
* * * * *
12191129 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGTAGGATCGGCA
1 GCATAAGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCA
* * * * * *
12191194 GCATGCAGGGGGGATCGGGCTAATCCTCGGCTTGCAAATTCTACCTCTCTTGTCGGCTGAACGCT
65 GCACGCAGGGGGGATCGGGCTAATCCTCGGCTTGCAAATTATACCTCTCTGGCCGGCTCAACGCC
* **
12191259 CGCACGCCCGTTTCATGAGTTGGTTTAT
130 CGCACGCCCATTTCATGAGTTGACTTAT
* ** * * * *
12191287 GTATAAGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAAGGTTGTGGCAGCGGGATGGGC
1 GCATAAGGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGC
**
12191351 AGCACGCAGAGGGGGA-CTGGGCTAATCCTCGGCTTGCGTATTATACCTCT-TCGGCCGGCTCAA
64 AGCACGCAG-GGGGGATC-GGGCTAATCCTCGGCTTGCAAATTATACCTCTCT-GGCCGGCTCAA
* * *
12191414 CGCCCGCACGCTCATTTCGTGGGTTGACTTAT
126 CGCCCGCACGCCCATTTCATGAGTTGACTTAT
* * ** * **
12191446 GCATACGGAGTTCATTCTCAGTCTATGATTGGACCGGACCGAGGGTTGTGGTAGCAGGATCAACA
1 GCATAAGGAGTTCATTC-CAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCA
** *
12191511 GCACATAGGGGTGATCGGG
65 GCACGCAGGGGGGATCGGG
12191530 TCGATTTCCG
Statistics
Matches: 192, Mismatches: 43, Indels: 16
0.76 0.17 0.06
Matches are distributed among these distances:
157 3 0.02
158 63 0.33
159 124 0.65
160 2 0.01
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATAAGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAG
CACGCAGGGGGGATCGGGCTAATCCTCGGCTTGCAAATTATACCTCTCTGGCCGGCTCAACGCCC
GCACGCCCATTTCATGAGTTGACTTAT
Found at i:12191644 original size:25 final size:26
Alignment explanation
Indices: 12191604--12191655 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
12191594 GTTGGCTTAG
12191604 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
12191630 GCATACG-AGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12191655 G
1 G
12191656 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12191972 original size:26 final size:26
Alignment explanation
Indices: 12191919--12191974 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
12191909 TGGGTTGACT
*
12191919 TAAGCATACGGAGTTCATCCCTAGTC
1 TAAGCATACGGAGTTCATCCCTAATC
12191945 TAAGCATACGGAGTTCATTCCC-AATC
1 TAAGCATACGGAGTTCA-TCCCTAATC
12191971 TAAG
1 TAAG
12191975 ATCAGATCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 24 0.86
27 4 0.14
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCTAATC
Found at i:12196410 original size:15 final size:15
Alignment explanation
Indices: 12196390--12196422 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
12196380 CAGTGCGCTC
12196390 ACCTTCTGACCCGCA
1 ACCTTCTGACCCGCA
12196405 ACCTTCTGACCCGCA
1 ACCTTCTGACCCGCA
12196420 ACC
1 ACC
12196423 ATCAGATCCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.21, C:0.48, G:0.12, T:0.18
Consensus pattern (15 bp):
ACCTTCTGACCCGCA
Found at i:12198743 original size:26 final size:26
Alignment explanation
Indices: 12198713--12198765 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12198703 GTTGACTTAG
*
12198713 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
12198739 GCATATAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
12198765 G
1 G
12198766 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:12200097 original size:158 final size:159
Alignment explanation
Indices: 12199756--12200108 Score: 392
Period size: 158 Copynumber: 2.2 Consensus size: 159
12199746 GCTCGCATGT
* *
12199756 CCATTTCGTGGG-TCAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAG
1 CCATTTCGTGGGTTGAACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAG
* * * * * * * * *
12199820 GGTTGTGGCAACGGCATCGACATCACGTAAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTG
66 AGTTGTGGCAACGGCACCGACAGCACGTAAGGGGGAACAGGCCGATCCCCAGCATGCGCATTATG
* * * **
12199885 CCTCTTCAGTCGGTTGAGTGCCCGCACGC
131 CCTCTTCAGTCGGCTCAGCGCCCGCAAAC
*
12199914 CCATTTTGTGGGTTGAAC-TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAG
1 CCATTTCGTGGGTTGAACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAG
* * ** ** *
12199978 AGTTGTGGTAGCGGGGCCGGTAGCACGTAAAGGGGGAACAGGTCGATCCCCAGCATGCGCATTAT
66 AGTTGTGGCAACGGCACCGACAGCACGT-AAGGGGGAACAGGCCGATCCCCAGCATGCGCATTAT
12200043 GCCTCTTC-GATCGGCTCAGCGCCCGCAAAC
130 GCCTCTTCAG-TCGGCTCAGCGCCCGCAAAC
* * * * *
12200073 TCGTTTCG-GGGTTG-ACTTATGCATACGAAGTTCATT
1 CCATTTCGTGGGTTGAACTTAGGCATAGGGAGTTCATT
12200109 TCGAGTCTAA
Statistics
Matches: 161, Mismatches: 30, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
157 2 0.01
158 99 0.61
159 60 0.37
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
CCATTTCGTGGGTTGAACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAG
AGTTGTGGCAACGGCACCGACAGCACGTAAGGGGGAACAGGCCGATCCCCAGCATGCGCATTATG
CCTCTTCAGTCGGCTCAGCGCCCGCAAAC
Found at i:12200302 original size:26 final size:26
Alignment explanation
Indices: 12200252--12200304 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12200242 GTTTGCTTAG
*
12200252 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
12200278 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
12200304 G
1 G
12200305 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:12201127 original size:26 final size:26
Alignment explanation
Indices: 12201091--12201141 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12201081 TGGCTTAGGC
12201091 ATACAGAGTTCATT-CCATGTCTAAGT
1 ATACAGAGTTCATTCCCA-GTCTAAGT
12201117 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
12201142 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:12201497 original size:26 final size:26
Alignment explanation
Indices: 12201467--12201519 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12201457 GTTGACTTAG
12201467 GCATACGGAGTTCATCTCC-AGTCTAA
1 GCATACGGAGTTCAT-TCCTAGTCTAA
*
12201493 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
12201519 G
1 G
12201520 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:12202004 original size:26 final size:26
Alignment explanation
Indices: 12201968--12202020 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12201958 GTTGGCTTAG
*
12201968 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12201994 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12202020 G
1 G
12202021 ATCGGTTCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12202527 original size:255 final size:255
Alignment explanation
Indices: 12202055--12202529 Score: 593
Period size: 255 Copynumber: 1.9 Consensus size: 255
12202045 TAGTCGGACA
* * * *
12202055 GCAGCAGGATCGATAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTACGTATTTTACCTCTCC
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCTGGCATACGTATTCTACCTCTCC
* *
12202120 AACCGGCTGAGCGCCCGCACGTCGATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 AACCGGCTGAGCGCCCGCACGCCGATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * * * * * *
12202185 CTCAACCCCAGTCGAACCTAGGGTTGTGGCAACGGGACCGGCAGCACGTAACGGGGGATCGGGCT
131 CTCAACCCCAGCCGAACCGAAGGTTGTGGCAACGGGACCGACAGCACGCAACGGGGGACCGGCCT
** *
12202250 GATCCCCGGCTTTTGTATTATGCCTATCTAGCTGGCTGAGCGCCCGCATTGAGGGTTGCG
196 GATCCCCGGCTTGCGCATTATGCCTATCTAGCTGGCTGAGCGCCCGCATTGAGGGTTGCG
* * *
12202310 GCAGTAGGATCGACAGCACGCAGGGGGGACCGGGCCGAT-CCTCGGCATGC-TCATTCTGCCTCT
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCT-GGCATACGT-ATTCTACCTCT
*** * *
12202373 CCGGTCGGCTGATCGCCCGCACGCCCG-TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
64 CCAACCGGCTGAGCGCCCGCACG-CCGATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
* * **
12202437 TTTCT-AAGCCCCAGCCGGACCGAAGGTTGTGGCAGTGGGACCGACAGCACGCAGA-GGGGGACC
128 TGTCTCAA-CCCCAGCCGAACCGAAGGTTGTGGCAACGGGACCGACAGCACGCA-ACGGGGGACC
*
12202500 AGGCCT-ATCCCTGGCTTGCGCATTATGCCT
191 -GGCCTGATCCCCGGCTTGCGCATTATGCCT
12202530 CTCCGGCCGG
Statistics
Matches: 185, Mismatches: 29, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
254 6 0.03
255 172 0.93
256 7 0.04
ACGTcount: A:0.17, C:0.29, G:0.32, T:0.22
Consensus pattern (255 bp):
GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCTGGCATACGTATTCTACCTCTCC
AACCGGCTGAGCGCCCGCACGCCGATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTCAACCCCAGCCGAACCGAAGGTTGTGGCAACGGGACCGACAGCACGCAACGGGGGACCGGCCT
GATCCCCGGCTTGCGCATTATGCCTATCTAGCTGGCTGAGCGCCCGCATTGAGGGTTGCG
Found at i:12202591 original size:158 final size:158
Alignment explanation
Indices: 12202303--12202603 Score: 426
Period size: 158 Copynumber: 1.9 Consensus size: 158
12202293 CCGCATTGAG
* * * *
12202303 GGTTGCGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCTCGGCATGCTCATTCTG
1 GGTTGCGGCAGTAGGACCGACAGCACGCAGGGGGGACCAGGCCGATCCTCGGCATGCGCATTATG
* * * * *
12202368 CCTCTCCGGTCGGCTGATCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
66 CCTCTCCGGCCGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
*
12202433 TCCATTTCTAAGCCCCAGCCGGACCGAA
131 TCCATGTCTAAGCCCCAGCCGGACCGAA
* * * *
12202461 GGTTGTGGCAGTGGGACCGACAGCACGCAGAGGGGGACCAGGCCTATCC-CTGGCTTGCGCATTA
1 GGTTGCGGCAGTAGGACCGACAGCACGCAG-GGGGGACCAGGCCGATCCTC-GGCATGCGCATTA
* *
12202525 TGCCTCTCCGGCCGGCTGGGCACCCGCACGCTCATTTCGT-GGTTGGCTTAGGCATACGGAGTTC
64 TGCCTCTCCGGCCGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
12202589 ATTCCATGTCTAAGC
129 ATTCCATGTCTAAGC
12202604 ATAGGGAGTT
Statistics
Matches: 125, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
158 65 0.52
159 60 0.48
ACGTcount: A:0.16, C:0.30, G:0.32, T:0.22
Consensus pattern (158 bp):
GGTTGCGGCAGTAGGACCGACAGCACGCAGGGGGGACCAGGCCGATCCTCGGCATGCGCATTATG
CCTCTCCGGCCGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCCCCAGCCGGACCGAA
Found at i:12202612 original size:26 final size:26
Alignment explanation
Indices: 12202576--12202628 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12202566 GTTGGCTTAG
12202576 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12202602 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12202628 G
1 G
12202629 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12203309 original size:159 final size:155
Alignment explanation
Indices: 12203021--12203483 Score: 446
Period size: 159 Copynumber: 2.9 Consensus size: 155
12203011 ACACCGAACA
* * * * *
12203021 GAGGGTTGCGGTAGCATGATCGACAGCACACAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATT
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGG-CGAT-CCCGGCTTGCGCATT
* ** * * *
12203086 CTGTCTCTTCGACCGGCTGAGCGCCCGTACGC-CGGTTTCATGGGTTGGCTTAGGCATAGGGAGT
64 CTGCCTCTTCGATAGGCTGAGCGCCCG-ACGCTC-ATTTCGTGGGTTGGCTTAGGCATACGGAGT
* *
12203150 TCATTCCATGTCTAAGCCCTAGCT-GGACC
127 TCATTCCATGTCTAAGCCC-AGATCAGACC
* * *
12203179 GAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGATCGGGTCGATCTCCGACTTGCGCAT
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGATCGGG-CGATC-CCGGCTTGCGCAT
* * * * *** *
12203244 TATGCCTCTTCGATAGGCTCAGCGCCCGCACGCTCATTTCGTGGGCTGACTTATATATACAGAGT
63 TCTGCCTCTTCGATAGGCTGAGCGCCCG-ACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
* ** *
12203309 TCATT-CATAGTGTAAGATCGGATCAGACC
127 TCATTCCAT-GTCTAAGCCCAGATCAGACC
* * * *
12203338 GAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGGGACCGAGCTAATCCTCGGCTTGCGCATT
1 GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGC-GATCC-CGGCTTGCGCATT
* * * * * *
12203403 CTGCCTGTCCGATTGGTTGAGCGCCCAGACGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTT
64 CTGCCTCTTCGATAGGCTGAGCGCCC-GACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTT
12203468 CATTCCATGTCTAAGC
128 CATTCCATGTCTAAGC
12203484 ATACAGAGTT
Statistics
Matches: 243, Mismatches: 53, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 116 0.48
159 124 0.51
160 1 0.00
ACGTcount: A:0.18, C:0.25, G:0.32, T:0.24
Consensus pattern (155 bp):
GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCGATCCCGGCTTGCGCATTCT
GCCTCTTCGATAGGCTGAGCGCCCGACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCCCAGATCAGACC
Found at i:12203785 original size:171 final size:169
Alignment explanation
Indices: 12203549--12204533 Score: 673
Period size: 171 Copynumber: 5.8 Consensus size: 169
12203539 GACAGCAGTA
* * * * * * *
12203549 GGATCGGTAGCACGTAG-GAGGGACCGGGCTGATCCCCGGCTTGCCCATTTTGCCTCTCCGATCG
1 GGATCGGCAGCACATAGAGGGGGACCGGGCTGATCCCCCGCTTGCGCATTATGCCTCTCTGATCG
* * *
12203613 ACTGAGCACCTGCACGC-CGGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
66 ACTGAGCGCCCGCACGCTC-GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAA
* * *
12203677 GCCCCAGTCGGACAGAGGGTTGTGGCAGTAGGACCGGCAGCG
129 GCCCCAGCCAGACAGAGGGTTGTGGCAGCAGGA-CGGCAGCG
*
12203719 GGATCGGCAGCACATAGAGGGGGACCGGGCTGATCCCCCGCTTGCGCATTATGTCTCTCTGATCG
1 GGATCGGCAGCACATAGAGGGGGACCGGGCTGATCCCCCGCTTGCGCATTATGCCTCTCTGATCG
* * *
12203784 ACTGAGCGCCTGGACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
66 ACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-TCCAGTCTAAG
* * ** *** * ** * *
12203849 CATACAGAGTTCATTCCCA-ATCTATGATCGAACTGG-ACCGAGGGTTGTGGTAGCA
130 C---C-----CCA--GCCAGA-C-A-GAGGGTTGTGGCAGC-A-GG--ACGGCAGCG
** * * * ** * * *
12203904 GGATCGGCAGCACGCAG-TGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCG
1 GGATCGGCAGCACATAGAGGGGGACCGGGCTGATCCCCCGCTTGCGCATTATGCCTCTCTGATCG
* * * *
12203968 ACTGAGCGCTCGCACGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
66 ACTGAGCGCCCGCACGCTC-GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAA
* * * *
12204032 GCCCCAACCGGACGGAGGTTTGTGGCAGCA-G--GG-A-C-
129 GCCCCAGCCAGACAGAGGGTTGTGGCAGCAGGACGGCAGCG
* ** * *
12204067 ----CGGCAGCACATAGAGGGGGACCGGGTTGAT-CCCCGACTTATGCATTACGCCTCTC-CAGT
1 GGATCGGCAGCACATAGAGGGGGACCGGGCTGATCCCCCG-CTTGCGCATTATGCCTCTCTGA-T
* * * * * * *
12204126 CGGCTCAGCGCCCACACGCTCATTTTATGGGTTGACTTATGCATACGAAGTTCATTCCCAGTCTA
64 CGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTA
** * * ** * **
12204191 AG-ATCAGACCAGACCGAGGGTTGCGATAGCAGGACAGCAGTA
128 AGCCCCAG-CCAGACAGAGGGTTGTGGCAGCAGGACGGCAGCG
* * * * * * * *
12204233 GGATCGGTAGCACATA-AAGGGGACCAGG-TCGATCCCCGGCTTGTGCGTTTTCCCTCTCTGATC
1 GGATCGGCAGCACATAGAGGGGGACCGGGCT-GATCCCCCGCTTGCGCATTATGCCTCTCTGATC
* * * * * *
12204296 GGCTGAGTGCCCGTACGCTGGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
65 GACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAA
* * * *
12204361 GCCCCAGCCAGACCGAGGGTGGCGGCAGCAGGACCGACAGCG
129 GCCCCAGCCAGACAGAGGGTTGTGGCAGCAGGA-CGGCAGCG
* * * * * * *
12204403 GGATCGGCAGCACATAGAAGGGGACCGGGCTGATCTCCCGCTTACGTATTATGCCTCTTTG-GCC
1 GGATCGGCAGCACATAGAGGGGGACCGGGCTGATCCCCCGCTTGCGCATTATGCCTCTCTGATCG
* *
12204467 AGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
66 A-CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-TCCAGTCTAA
12204532 GC
129 GC
12204534 ATACAGAGTT
Statistics
Matches: 624, Mismatches: 141, Indels: 99
0.72 0.16 0.11
Matches are distributed among these distances:
159 16 0.03
160 95 0.15
161 5 0.01
163 1 0.00
164 2 0.00
165 1 0.00
166 2 0.00
168 4 0.01
169 105 0.17
170 55 0.09
171 183 0.29
172 14 0.02
173 2 0.00
174 4 0.01
175 1 0.00
176 2 0.00
179 2 0.00
180 1 0.00
181 3 0.00
182 2 0.00
183 11 0.02
184 93 0.15
185 20 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (169 bp):
GGATCGGCAGCACATAGAGGGGGACCGGGCTGATCCCCCGCTTGCGCATTATGCCTCTCTGATCG
ACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGC
CCCAGCCAGACAGAGGGTTGTGGCAGCAGGACGGCAGCG
Found at i:12203852 original size:26 final size:26
Alignment explanation
Indices: 12203822--12203872 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12203812 GTTGACTTAG
* *
12203822 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
12203848 GCATACAGAGTTCATTCCCAATCTA
1 GCATACAGAGTTCATCCCCAATCTA
12203873 TGATCGAACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:12204006 original size:867 final size:874
Alignment explanation
Indices: 12202454--12204225 Score: 2203
Period size: 867 Copynumber: 2.0 Consensus size: 874
12202444 GCCCCAGCCG
* * **
12202454 GACCGAAGGTTGTGGCAGTGGGACCGACAGCACGCAGAGGGGGACCAGGCCTATCCCTGGCTTGC
1 GACCGAGGGTTGTGGTAGCAGGACCGACAGCACGCAGAGGGGGACCAGGCCTATCCCTGGCTTGC
* *
12202519 GCATTATGCCTCTCCGGCCGGCTGGGCACCCGCACGCTCATTTCGTGGTTGGCTTAGGCATACGG
66 GCATTATGCCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCGTGGTTGGCTTAGGCATACGG
** *
12202584 AGTTCATTCCATGTCTAAGCATAGGGAGTTCATTCCCAGTCTAAGATCGAACCGAACTGAGGGTT
131 AGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTT
* *** * * * *
12202649 GCGGTGGTAGAACCAACAGTAGGATTGGTAGCGCGCAGGGGGGGACCGGTTCTATCCCCGGCTTA
196 ACGGTAACAGAACCAACAGTAGGATCGGTAGCACGCAGGGAGGGACCGGTGCTATCCCCGGCTTA
* * ** * ** *
12202714 CTCATTCTGCCTCTCGGTCGGTTGAGCGCCCGCACACTTGTTTCGTGGGTTGGCTTAGGCATACG
261 CCCATTCTGCCTCTCGATCGACTGAGCACCCGCACACCGGTTTCATGGGTTGGCTTAGGCATACG
* * * *
12202779 GAGTTCATTCCATGACTAAGCCCCAGCTGGACTGAGGGTTGTGGCAACAGGACTGGTAGTGGGAT
326 GAGTTCATTCCATGACTAAGCCCCAGCTGGACAGAGGGTTGTGGCAACAGGACCGGCAGCGGGAT
* * * * * *
12202844 TGGCAGCACGCAAAGAGGGATCGAGCTGATCCTCGGCTTACTCATTATGCCTCTCCCATCGACCT
391 CGGCAGCACACAAAGAGGGACCGAGCTGATCCCCCGCTTACGCATTATG-CTCTCCCATCGA---
*
12202909 CTCTGGCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC
452 --CT-GCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC
*** *
12202974 AGTCTAAGCATACAGAGTTCATTCCTGGTCTAAGATCACACCGAACAGAGGGTTGCGGTAGCATG
514 AGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCACACCGAACAGAGGGTTGCGGTAGCAGG
* * * *
12203039 ATCGACAGCACACAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGTCTCTTCGACCGGCT
579 ATCGACAGCACACAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACT
*
12203104 GAGCGCCCGTACGCCGGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
644 GAGCGCCCGCACGCCGGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
* * * * * * *
12203169 TAGCTGGACCGAGGGTTGTGGCAGC-GGGATCGGCAGCACGCAGAGGGGGATCGGGTCGATCTCC
709 CAACCGGACCGAGGGTTGTGGCAGCAGGGACCGGCAGCACACAGAGGGGGACCGGGTCGATCCCC
* * * * *
12203233 GACTTGCGCATTATGCCTCTTC-GATAGGCTCAGCGCCCGCACGCTCATTTCGTGGGCTGACTTA
774 GACTTACGCATTACGCCTCTCCAG-TAGGCTCAGCGCCCACACGCTCATTTCATGGGCTGACTTA
* * * * *
12203297 TATATAC-AGAGTTCATTCATAGTGTAAGATCGGATCA
838 TACATACGA-AGTTCATTCACAGTCTAAGATCAGACCA
*
12203334 GACCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAG-GGGGGACC-GAG-CTAAT-CCTCGGCT
1 GACCGAGGGTTGTGGTAGCAGGACCGACAGCACGCAGAGGGGGACCAG-GCCT-ATCCCT-GGCT
* * ** * *
12203395 TGCGCATTCTGCCTGTCCGATTGGTTGAGCGCCCAG-ACGCTCATTTCGTCGGTTGGCTTAGGCA
63 TGCGCATTATGCCTCTCCGACCGGCTGAGCACCC-GCACGCTCATTTCGT-GGTTGGCTTAGGCA
* * * *
12203459 TATGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGA
126 TACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGA
* * *
12203524 GGGTTACGGTAACAGGA-CAGCAGTAGGATCGGTAGCACGTA-GGAGGGACCGG-GCTGATCCCC
191 GGGTTACGGTAACAGAACCAACAGTAGGATCGGTAGCACGCAGGGAGGGACCGGTGCT-ATCCCC
* * * *
12203586 GGCTTGCCCATTTTGCCTCTCCGATCGACTGAGCACCTGCACGCCGGTTTCATGGGTTGGCTTAG
255 GGCTTACCCATTCTGCCTCT-CGATCGACTGAGCACCCGCACACCGGTTTCATGGGTTGGCTTAG
* **
12203651 GCATACGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACAGAGGGTTGTGGCAGTAGGACCGGC
319 GCATACGGAGTTCATTCCATGACTAAGCCCCAGCT-GGACAGAGGGTTGTGGCAACAGGACCGGC
* * * * * *
12203715 AGCGGGATCGGCAGCACATAGAGGGGGACCGGGCTGATCCCCCGCTTGCGCATTATG-TCTCTC-
383 AGCGGGATCGGCAGCACACAAAGAGGGACCGAGCTGATCCCCCGCTTACGCATTATGCTCTCCCA
* *
12203778 T-GA-T-CGACTGAGCGCCTGGACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCC
448 TCGACTGCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCC
* * * * *
12203840 CAGTCTAAGCATACAGAGTTCATTCCCAATCTATGATCGA-ACTGGACCGAGGGTTGTGGTAGCA
513 CAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATC-ACACCGAACAGAGGGTTGCGGTAGCA
* * * * **
12203904 GGATCGGCAGCACGCAGTGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGA
577 GGATCGACAGCACACAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGA
* * *
12203969 CTGAGCGCTCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
642 CTGAGCGCCCGCACGCCGGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
* * * *
12204034 CCCAACCGGACGGAGGTTTGTGGCAGCAGGGACCGGCAGCACATAGAGGGGGACCGGGTTGATCC
707 CCCAACCGGACCGAGGGTTGTGGCAGCAGGGACCGGCAGCACACAGAGGGGGACCGGGTCGATCC
* * * *
12204099 CCGACTTATGCATTACGCCTCTCCAGTCGGCTCAGCGCCCACACGCTCATTTTATGGGTTGACTT
772 CCGACTTACGCATTACGCCTCTCCAGTAGGCTCAGCGCCCACACGCTCATTTCATGGGCTGACTT
* *
12204164 ATGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCA
837 ATACATACGAAGTTCATTCACAGTCTAAGATCAGACCA
* *
12204202 GACCGAGGGTTGCGATAGCAGGAC
1 GACCGAGGGTTGTGGTAGCAGGAC
12204226 AGCAGTAGGA
Statistics
Matches: 762, Mismatches: 118, Indels: 36
0.83 0.13 0.04
Matches are distributed among these distances:
867 246 0.32
868 136 0.18
869 3 0.00
875 2 0.00
876 1 0.00
877 7 0.01
878 40 0.05
879 210 0.28
880 117 0.15
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (874 bp):
GACCGAGGGTTGTGGTAGCAGGACCGACAGCACGCAGAGGGGGACCAGGCCTATCCCTGGCTTGC
GCATTATGCCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCGTGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTT
ACGGTAACAGAACCAACAGTAGGATCGGTAGCACGCAGGGAGGGACCGGTGCTATCCCCGGCTTA
CCCATTCTGCCTCTCGATCGACTGAGCACCCGCACACCGGTTTCATGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGACTAAGCCCCAGCTGGACAGAGGGTTGTGGCAACAGGACCGGCAGCGGGAT
CGGCAGCACACAAAGAGGGACCGAGCTGATCCCCCGCTTACGCATTATGCTCTCCCATCGACTGC
GACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
GCATACAGAGTTCATTCCCAATCTAAGATCACACCGAACAGAGGGTTGCGGTAGCAGGATCGACA
GCACACAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCC
CGCACGCCGGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGG
ACCGAGGGTTGTGGCAGCAGGGACCGGCAGCACACAGAGGGGGACCGGGTCGATCCCCGACTTAC
GCATTACGCCTCTCCAGTAGGCTCAGCGCCCACACGCTCATTTCATGGGCTGACTTATACATACG
AAGTTCATTCACAGTCTAAGATCAGACCA
Found at i:12204341 original size:169 final size:171
Alignment explanation
Indices: 12204057--12204534 Score: 467
Period size: 169 Copynumber: 2.8 Consensus size: 171
12204047 AGGTTTGTGG
* * * * *
12204057 CAGCAGGGACCGGCAGCACATAGAGGGGGACCGGGTTGATC-CCCGACTTATGCATTA-CGCCTC
1 CAGCA-GGATCGGCAGCACATAGAAGGGGACCGGGCTGATCTCCCG-CTTACGTATTATC-CCTC
* * * * * * * *
12204120 TC-CAGTCGGCTCAGCGCCCACACGCTCATTTTATGGGTTGACTTATGCATACGAAGTTCATTCC
63 TCTGA-CCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCC
* * *
12204184 CAGTCTAAG-ATCAGACCAGACCGAGGGTTGCGATAGCAGGACAG-
127 CAGTCTAAGCACCAG-CCAGACCGAGGGTGGCGACAGCAGGACAGA
* * * *
12204228 CAGTAGGATCGGTAGCACATA-AAGGGGACCAGG-TCGATC-CCCGGCTTGTGCGT-TT-TCCCT
1 CAGCAGGATCGGCAGCACATAGAAGGGGACCGGGCT-GATCTCCC-GC-T-TACGTATTATCCCT
* * * * * *
12204288 CTCTGATCGGCTGAGTGCCCGTACGCTGGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATT-C
62 CTCTGACCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCC
* * *
12204352 CATGTCTAAGCCCCAGCCAGACCGAGGGTGGCGGCAGCAGGACCGA
127 CA-GTCTAAGCACCAGCCAGACCGAGGGTGGCGACAGCAGGACAGA
* * *
12204398 CAGCGGGATCGGCAGCACATAGAAGGGGACCGGGCTGATCTCCCGCTTACGTATTATGCCTCTTT
1 CAGCAGGATCGGCAGCACATAGAAGGGGACCGGGCTGATCTCCCGCTTACGTATTATCCCTCTCT
* *
12204463 GGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC-AGAGTTCATCCCCAG
66 GACCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGA-AGTTCATTCCCAG
12204527 TCTAAGCA
130 TCTAAGCA
12204535 TACAGAGTTC
Statistics
Matches: 251, Mismatches: 40, Indels: 32
0.78 0.12 0.10
Matches are distributed among these distances:
168 4 0.02
169 108 0.43
170 45 0.18
171 87 0.35
172 7 0.03
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (171 bp):
CAGCAGGATCGGCAGCACATAGAAGGGGACCGGGCTGATCTCCCGCTTACGTATTATCCCTCTCT
GACCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGT
CTAAGCACCAGCCAGACCGAGGGTGGCGACAGCAGGACAGA
Found at i:12204436 original size:684 final size:676
Alignment explanation
Indices: 12203482--12205378 Score: 2345
Period size: 684 Copynumber: 2.8 Consensus size: 676
12203472 CCATGTCTAA
* * * *
12203482 GCATAC-AGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAACAGGACAGCA
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGACAGCA
* * * **
12203546 GTAGGATCGGTAGCACGT-AGGAGGGACCGGGCTGATCCCCGGCTTGCCCATTTTGCCTCTCCGA
65 GTAGGATCGGTAGCACATAAGG-GGGACCAGGCCGATCCCCGGCTTGTGCATTTTGCCTCTCCGA
* *
12203610 TCGACTGAGCACCTGCACGCCGGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
129 TCGGCTGAGCACCCGCACG-CGGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
*
12203675 AAGCCCCAGTCGGACAGAGGGTTGTGGCAGTAGGACCGGCAGCGGGATCGGCAGCACATAGAGGG
193 AAGCCCCAGTCGGACCGAGGG-TG-GGCAG-AGGACC-GCAGCGGGATCGGCAGCACATAGAGGG
* * *
12203740 GGACCGGGCTGATCCCCCGCTTGCGCATTATGTCTCTCTGATCGACTGAGCGCCTGGACGCTCGT
254 GGACCGGGCTGATCCCCCGCTTGCGCATTATGCCTCTCTG-TCGACTGAGCGCCCGCACGCTCGT
*
12203805 TTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAAT
318 TTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAAT
* *** * *
12203870 CTATGATCGAACTGGACCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGTGGGGATCGGGCCG
383 CTATGATCGAACCGGACCGAGGGTTACAGTAGCAGGATCGGCAGCACGCAGTGGGGACCAGGCCG
*
12203935 ATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCTCGCACGCCTGTTTCGTGGGTTG
448 ATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCTCGCACGCCTGTTTCGTGGGTTG
** *
12204000 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACGGAGGTTTGTGGCAGCAGGG
513 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC-ACCAAACGAAGGTTTGTGGCAG-AGGG
* * *
12204065 ACCGGCAGCACATAGAGGGGGACCGGGTTGATCCCCGACTTATGCATTACGCCTCTCCAGTCGGC
576 ACCGACAGCACATAGAGGGGGACCAGGTTGATCCCCGACTTACGCATTACGCCTCTCCAGTCGGC
*
12204130 TCAGCGCCCACACGCTCATTTTATGGGTTGACTTAT
641 TCAGCGCCCACACGCTCATTTCATGGGTTGACTTAT
* *
12204166 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGACAGCAG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGACAGCAG
* * * * *
12204231 TAGGATCGGTAGCACATAAAGGGGACCAGGTCGATCCCCGGCTTGTGCGTTTTCCCTCTCTGATC
66 TAGGATCGGTAGCACATAAGGGGGACCAGGCCGATCCCCGGCTTGTGCATTTTGCCTCTCCGATC
** * *
12204296 GGCTGAGTGCCCGTACGCTGGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
131 GGCTGAGCACCCGCACGC-GGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
12204361 GCCCCAGCCAGACCGAGGGTGGCGGCAGCAGGACCGACAGCGGGATCGGCAGCACATAGAAGGGG
195 GCCCCAGTCGGACCGAGGGT-G-GGCAG-AGGACCG-CAGCGGGATCGGCAGCACATAGAGGGGG
* * * * * *
12204426 ACCGGGCTGATCTCCCGCTTACGTATTATGCCTCTTTGGCCAGCTGAGCGCCCGCACGCTCGTTT
256 ACCGGGCTGATCCCCCGCTTGCGCATTATGCCTCTCTGTCGA-CTGAGCGCCCGCACGCTCGTTT
*
12204491 CATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCTAATCT
320 CATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCT
* * *
12204556 ATGATCGAACCGGACCGGGGGTTACAGTAGCAGGATCGGTAGCACGCAGTGGGGACCAGGTCGAT
385 ATGATCGAACCGGACCGAGGGTTACAGTAGCAGGATCGGCAGCACGCAGTGGGGACCAGGCCGAT
* * * * * * *
12204621 CCCTAGCTTGCGCATTCTGCCTCTTCGGTCGGTTGAGCTCTCGTACACCCGTTTCGTGGGTTGGC
450 CCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCTCGCACGCCTGTTTCGTGGGTTGGC
* * *
12204686 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAAATGAAGGTTTGTGGCAGTGGGACCG
515 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCACCAAACGAAGGTTTGTGGCAGAGGGACCG
* * * * **
12204751 ACAGCACGTAGAGGGGGATCAGGTTGATCCCCGACTTGCGCATTATGCCTCTCTGGTCGGCTCAG
580 ACAGCACATAGAGGGGGACCAGGTTGATCCCCGACTTACGCATTACGCCTCTCCAGTCGGCTCAG
* *
12204816 CGCCCGCACGCTCATTTCGTGGGTTGACTTAT
645 CGCCCACACGCTCATTTCATGGGTTGACTTAT
* * *
12204848 GCATACGGAGTCCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCA-G---G-A-
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGACAGCAG
* * *
12204907 T-CGA-C---AGCACGA-AAGGGGAGGACCAAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCG
66 TAGGATCGGTAGCAC-ATAA-GGG-GGACCAGGCCGATCCCCGGCTTGTGCATTTTGCCTCTCCG
* * * * * *
12204966 GTTGGTTGAGCACCCGCACGACCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
128 ATCGGCTGAGCACCCGCACG-CGGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* * * *
12205031 TAAGCCCCAGTCGGACCGAGGGT----TGA-G---GCAGCGGGACCGGCAACACAAAGAGGGGGA
192 TAAGCCCCAGTCGGACCGAGGGTGGGCAGAGGACCGCAGCGGGATCGGCAGCACATAGAGGGGGA
* * * * * *
12205088 CCGGG-TCGATCCTCGGCTTGCGCATTATGCCTCTCTGGTCGGCTCAGCACCCACACGCTCGTTT
257 CCGGGCT-GATCCCCCGCTTGCGCATTATGCCTCTCT-GTCGACTGAGCGCCCGCACGCTCGTTT
** * * *
12205152 TGTGGGTTGACTTAAGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
320 CATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCT
* * * * * *
12205217 AAGATC-AGACCAGACCGAGGGTTCCAGCAGCAGGATCGGCAGCACGCAGGGGGGCCCAGGCCGA
385 ATGATCGA-ACCGGACCGAGGGTTACAGTAGCAGGATCGGCAGCACGCAGTGGGGACCAGGCCGA
* * * * * *
12205281 ACTCC-GGCTTGCGTATTTTGCCCCTCCGATCGGCTGAGCGCCCGCACGCTCAT-TTT-GTGGGT
449 TC-CCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCTCGCACGC-C-TGTTTCGTGGGT
* * *
12205343 TGGCTTAGGCATACGAAGTTCATTTCATGTCTAAGC
511 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
12205379 ATACGGAGTT
Statistics
Matches: 1050, Mismatches: 147, Indels: 55
0.84 0.12 0.04
Matches are distributed among these distances:
660 2 0.00
661 257 0.24
662 9 0.01
665 1 0.00
666 1 0.00
667 1 0.00
671 7 0.01
672 3 0.00
673 108 0.10
674 2 0.00
675 2 0.00
676 1 0.00
677 1 0.00
678 1 0.00
681 1 0.00
682 143 0.14
683 22 0.02
684 485 0.46
685 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (676 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGACAGCAG
TAGGATCGGTAGCACATAAGGGGGACCAGGCCGATCCCCGGCTTGTGCATTTTGCCTCTCCGATC
GGCTGAGCACCCGCACGCGGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CCCCAGTCGGACCGAGGGTGGGCAGAGGACCGCAGCGGGATCGGCAGCACATAGAGGGGGACCGG
GCTGATCCCCCGCTTGCGCATTATGCCTCTCTGTCGACTGAGCGCCCGCACGCTCGTTTCATGGG
TTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTATGATC
GAACCGGACCGAGGGTTACAGTAGCAGGATCGGCAGCACGCAGTGGGGACCAGGCCGATCCCTGG
CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCTCGCACGCCTGTTTCGTGGGTTGGCTTAGGC
ATAGGGAGTTCATTCCATGTCTAAGCCCCACCAAACGAAGGTTTGTGGCAGAGGGACCGACAGCA
CATAGAGGGGGACCAGGTTGATCCCCGACTTACGCATTACGCCTCTCCAGTCGGCTCAGCGCCCA
CACGCTCATTTCATGGGTTGACTTAT
Found at i:12204556 original size:26 final size:26
Alignment explanation
Indices: 12204506--12204556 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12204496 GTTGACTTAG
*
12204506 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
12204532 GCATACAGAGTTCATTCCTAATCTA
1 GCATACAGAGTTCATCCCCAATCTA
12204557 TGATCGAACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:12205137 original size:159 final size:156
Alignment explanation
Indices: 12204606--12205194 Score: 545
Period size: 159 Copynumber: 3.7 Consensus size: 156
12204596 AGCACGCAGT
** * * * * * * * *
12204606 GGGGACCAGGTCGATCCCTAGCTTGCGCATTCTGCCTCT-TCGGTCGGTTGAGCTCTCGTACACC
1 GGGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTCT-GGTCGGCTCAGCACCCGCACGCT
* * * ** *
12204670 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAAATGAAGGTT
65 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCCCCAGCGACCG-AGGGT
* * **
12204735 TGTGGCAGTGGGACCGACAGCACGTAGAG
128 TGAGGCAGCGGGACCGACAGCACAAAGAG
* * * *
12204764 GGGGATCAGGTTGATCCCCGACTTGCGCATTATGCCTCTCTGGTCGGCTCAGCGCCCGCACGCTC
1 GGGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTCTGGTCGGCTCAGCACCCGCACGCTC
* * * * * ** *
12204829 ATTTCGTGGGTTGACTTATGCATACGGAGTCCATTCCCAATCTAAGATCGGACCAGACCGAGGGT
66 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAG-CCCCAGC-GACCGAGGGT
* * * *
12204894 TGCGGTAGCAGGATCGACAGCACGAAAG-G
128 TGAGGCAGCGGGACCGACAGCAC-AAAGAG
* * * * * * * *
12204923 GGAGGACCAAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTTGGTTGAGCACCCGCACGAC
1 GG-GGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTCTGGTCGGCTCAGCACCCGCACG-C
* *
12204988 -CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGG
64 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCCCCAG-C-GACCGAGG
* *
12205052 GTTGAGGCAGCGGGACCGGCAACACAAAGAG
126 GTTGAGGCAGCGGGACCGACAGCACAAAGAG
* * *
12205083 GGGGACCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCTGGTCGGCTCAGCACCCACACGCTC
1 GGGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTCTGGTCGGCTCAGCACCCGCACGCTC
* * * *
12205148 GTTTTGTGGGTTGACTTAAGCATACAGAGTTCATCCCCAGTCTAAGC
66 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCAGTCTAAGC
12205195 ATACGGAGTT
Statistics
Matches: 339, Mismatches: 80, Indels: 23
0.77 0.18 0.05
Matches are distributed among these distances:
158 87 0.26
159 128 0.38
160 123 0.36
161 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
GGGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTCTGGTCGGCTCAGCACCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCCCCAGCGACCGAGGGTTGA
GGCAGCGGGACCGACAGCACAAAGAG
Found at i:12205203 original size:26 final size:26
Alignment explanation
Indices: 12205164--12205219 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
12205154 TGGGTTGACT
12205164 TAAGCATACAGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
* *
12205190 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
12205216 TAAG
1 TAAG
12205220 ATCAGACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:12205400 original size:26 final size:26
Alignment explanation
Indices: 12205351--12205403 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12205341 GTTGGCTTAG
*
12205351 GCATACGAAGTTCATTTCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
*
12205377 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGAAGTTCATT-CCATGTCTAA
12205403 G
1 G
12205404 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:12206423 original size:159 final size:158
Alignment explanation
Indices: 12206062--12206740 Score: 566
Period size: 159 Copynumber: 4.2 Consensus size: 158
12206052 CCCAATCTAA
* * * * *
12206062 GCATACGGAGTTCATTCCTAGTCTAAGATCAAATCGGACCGAGGGTTGCGGTAGCAGGATCGGTA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAGGACCAGCA
* * * ** * *
12206127 GCACGCAGGGGGG-ATCGGGGTGATCCCCAGCTTGCGCATTCTGCCTCTTCAACCGGCTGAGTGC
65 GCACGCAGGGGGGAACCGGGCTGATCCCCAGCTTACGCATTCTGCCTCTTCGGCCAGCTGAGCGC
* *
12206191 CCGCATGGC-CATTTCGTGGGTTGGCTTAG
130 CCGCA-CGCTCATTTCGTGGGTTGACTTAG
* * ** * * *
12206220 GCATAGGGAGTTCATTCCATGTCTGAGCCCCAG-TC-GAATCGAGGGTTGTGGTAGCGGGACCAG
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGATCGGACT-GAGGGTTGCGGTAGCAGGACCAG
* * * * * * *
12206283 CAGCACGCAGAGAGGG-ACCAGGCTGATCCTCGGCTTACACATTATGCCTCTTCGGCCAGCTCAG
63 CAGCACGCAG-GGGGGAACCGGGCTGATCCCCAGCTTACGCATTCTGCCTCTTCGGCCAGCTGAG
* * * *
12206347 CACCCGCACGTTCGTTTCGTGGGTTGGCTTAG
127 CGCCCGCACGCTCATTTCGTGGGTTGACTTAG
** *
12206379 GCATACGGAGTTCATTCTCAGTCTAAGATCAGATCGGACTGAGGGTTGCGACAGTAGGACCAGTA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAGGACC---A
* * * *
12206444 GCAGGATCGACAGCACGCAGGGGGTACC-GGATCGAT-CCCTGTCTTACGCATTCTGCCTCTCCG
62 GCA-G--C-AC-GCA-G--GGGGGAACCGGGCT-GATCCCCAG-CTTACGCATTCTGCCTCTTCG
* * *
12206507 GCTAGCTGAGCGCCCACACGCTCATTTCATGGGTTGACTTAG
117 GCCAGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
** * * * * * *
12206549 GCATACAAAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTACGGTGGCATGATC-GAC
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAGGACCAG-C
* * ** *
12206613 AGCACGCAGGGGGGAATCGGGC-CAGTCCCCAGCTTGTGCATTCTGCCTCTTCGGCCGGCTGAGC
64 AGCACGCAGGGGGGAACCGGGCTGA-TCCCCAGCTTACGCATTCTGCCTCTTCGGCCAGCTGAGC
*
12206677 GCTCGCACGCTCATTTCGTGGGTTGACTTAG
128 GCCCGCACGCTCATTTCGTGGGTTGACTTAG
*
12206708 GCATACGGAGTTCCTTCCCAGTCTAAGATCAGA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGA
12206741 CCAGATTGAA
Statistics
Matches: 412, Mismatches: 82, Indels: 53
0.75 0.15 0.10
Matches are distributed among these distances:
157 3 0.01
158 58 0.14
159 197 0.48
160 13 0.03
161 1 0.00
162 7 0.02
163 3 0.01
164 1 0.00
165 1 0.00
166 4 0.01
167 5 0.01
168 1 0.00
169 12 0.03
170 106 0.26
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAGGACCAGCAG
CACGCAGGGGGGAACCGGGCTGATCCCCAGCTTACGCATTCTGCCTCTTCGGCCAGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGACTTAG
Found at i:12206890 original size:157 final size:157
Alignment explanation
Indices: 12206443--12206891 Score: 451
Period size: 159 Copynumber: 2.8 Consensus size: 157
12206433 TAGGACCAGT
* * * * * * *
12206443 AGCAGGATCGACAGCACGCAGGGGGTACCGGATCGA-TCCCTGTCTTACGCATTCTGCCTCTCCG
1 AGCAGGATCGACAGCACGCAGGGGGAATC-GAGCCAGTCCCCGACTTACGCATTCTGCCTCTCTG
* * * *
12206507 GCTAGCTGAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACAAAGTTCATTCC-TAGT
65 CCGA-CTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCAT-GT
* **
12206571 CTAAGATCAGACCAGACTGAGGGTTACGGT
128 CTAAGATCAGACCAGACTGAAGGTTACGAC
* * * **
12206601 GGCATGATCGACAGCACGCAGGGGGGAATCGGGCCAGTCCCC-AGCTTGTGCATTCTGCCTCTTC
1 AGCAGGATCGACAGCACGCA-GGGGGAATCGAGCCAGTCCCCGA-CTTACGCATTCTGCCTC-TC
* * * * * *
12206665 GGCCGGCTGAGCGCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCCTTCCCA-G
63 TGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATT-CCATG
* **
12206729 TCTAAGATCAGACCAGATTGAAGGTTGTGAC
127 TCTAAGATCAGACCAGACTGAAGGTTACGAC
*
12206760 AGCAGGATCGATAGCACGCAGGGAGG-ATCGAGCCAGTCCCCGACTTACGCA-TCTGCCTCTCTG
1 AGCAGGATCGACAGCACGCAGGG-GGAATCGAGCCAGTCCCCGACTTACGCATTCTGCCTCTCTG
* * * * * * *
12206823 ATCGACTGAGCGCCCGCATGCTCGTTTCATTGGTTGGCTTCGGCATACGAAGTTTATTCCATGTC
65 -CCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTC
12206888 TAAG
129 TAAG
12206892 CATATGGGGT
Statistics
Matches: 235, Mismatches: 46, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
156 6 0.03
157 60 0.26
158 44 0.19
159 119 0.51
160 6 0.03
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (157 bp):
AGCAGGATCGACAGCACGCAGGGGGAATCGAGCCAGTCCCCGACTTACGCATTCTGCCTCTCTGC
CGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTA
AGATCAGACCAGACTGAAGGTTACGAC
Found at i:12207213 original size:171 final size:170
Alignment explanation
Indices: 12206891--12207258 Score: 433
Period size: 171 Copynumber: 2.2 Consensus size: 170
12206881 CCATGTCTAA
* * * * * * *
12206891 GCATATGGGGTTCATTCC-TAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGACTAGT
1 GCATACGGAGTTCATTCCAT-GTCTAAGCTCAGACCAGACCGAGGGTTACGGCAGCAGGACCAGC
* * *
12206955 AGCAGGATCGACAGCACATAGGGGGGACTAGGCCGATCCCCGGCTTGCGCATTCTACCTCTTCGG
65 AGCAGGATCGACAACACATAGGGGGGACTAGGCCGATCCCCGGCTTGCGCATTATACCTCTTCGA
* *
12207020 TCGGCTGAACGCCCGCACGCTCGTTTTATGGGTTGGCTTAG
130 TCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* *
12207061 GCATACGGAGTTCATTCCATGTCTAAGCTCTAG-CCAGACCTAGGGTTATGGCAGCAGGACCAGC
1 GCATACGGAGTTCATTCCATGTCTAAGCTC-AGACCAGACCGAGGGTTACGGCAGCAGGACCAGC
* * * **
12207125 AGCAGGATC-ATCAACACGTAGAGGGGGACTGGGCTGATCTTCGGCTTGCGCATTATGA-CTCTT
65 AGCAGGATCGA-CAACACATAG-GGGGGACTAGGCCGATCCCCGGCTTGCGCATTAT-ACCTCTT
* * *
12207188 CGATCGGCTG-ACTGCCTGTACGCTCGTTTCGTGGGTTGACTTAG
127 CGATCGGCTGAAC-GCCCGCACGCTCGTTTCATGGGTTGACTTAG
*
12207232 GCATACGGAGTTCATCCCA-GTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
12207259 ATACGGAGTT
Statistics
Matches: 169, Mismatches: 23, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
169 1 0.01
170 77 0.46
171 90 0.53
172 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (170 bp):
GCATACGGAGTTCATTCCATGTCTAAGCTCAGACCAGACCGAGGGTTACGGCAGCAGGACCAGCA
GCAGGATCGACAACACATAGGGGGGACTAGGCCGATCCCCGGCTTGCGCATTATACCTCTTCGAT
CGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:12207266 original size:25 final size:26
Alignment explanation
Indices: 12207232--12207283 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
12207222 GTTGACTTAG
12207232 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12207257 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12207283 G
1 G
12207284 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12207749 original size:159 final size:155
Alignment explanation
Indices: 12207256--12207758 Score: 494
Period size: 158 Copynumber: 3.2 Consensus size: 155
12207246 TCCCAGTCTA
* ** *
12207256 AGCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCAAGGGTTGCGATAGCATGATCGG
1 AGCATACGGAGTTCATT-CCATGTCTAAGATCA-ACCAGACCGAGGGTTGCGGCAGCAAGATCGG
* * ** *
12207320 TAGCACGCAGAGGGGACCGGGCCGATCCTTGGCAAGCGCATTCTGCCTCTGCGGCCT-GCTGAGC
64 CAGCACGCAGAGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGG--TGGCTGAGC
* * * * *
12207384 GCCCACACGCCCATTTCCTGGATTGGCTT
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTT
** ** * * **
12207413 AGGCATGGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGA-CTG
1 A-GCATACGGAGTTCATTCCATGTCTAAG-ATCAACCAGACCGAGGGTTGCGGCAGCAAGATC-G
* * * * * * * *
12207477 GCAGTACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCACATTATGCCTTTTCGCG-GGCTCAG
63 GCAGCACGCAGA-GGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCG-GTGGCTGAG
*
12207541 CGCCCGCACGCTCGTTTCGTGGGTTGACTT
126 CGCCCGCACGCTCGTTTCGTGGGTTGGCTT
* *
12207571 ATGCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCAGACGGAGGGTTGCGGCAGCAAGATCA
1 A-GCATACGGAGTTCATT-CCATGTCTAAGATC-AACCAGACCGAGGGTTGCGGCAGCAAGATCG
* * * *
12207635 ACAGCATGCAGGAGGGGATCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTTGGCTGAG
63 GCAGCACGCA-GAGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGG-TGGCTGAG
*
12207700 CGCTCGCACGCTCGTTTCGTGGGTTGGCTT
126 CGCCCGCACGCTCGTTTCGTGGGTTGGCTT
12207730 AGCCATACGGAGTTCATTCCATGTCTAAG
1 AG-CATACGGAGTTCATTCCATGTCTAAG
12207759 CATACGGAGT
Statistics
Matches: 277, Mismatches: 54, Indels: 28
0.77 0.15 0.08
Matches are distributed among these distances:
157 7 0.03
158 171 0.62
159 98 0.35
160 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (155 bp):
AGCATACGGAGTTCATTCCATGTCTAAGATCAACCAGACCGAGGGTTGCGGCAGCAAGATCGGCA
GCACGCAGAGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTT
Found at i:12207769 original size:26 final size:26
Alignment explanation
Indices: 12207733--12207784 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12207723 TTGGCTTAGC
12207733 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
*
12207759 CATACGGAGTTTATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
12207785 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:12208490 original size:26 final size:26
Alignment explanation
Indices: 12208454--12208506 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12208444 GTTGACTTAG
*
12208454 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
12208480 GCATGCGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
12208506 G
1 G
12208507 ATTGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:12208807 original size:159 final size:157
Alignment explanation
Indices: 12208517--12208984 Score: 469
Period size: 159 Copynumber: 2.9 Consensus size: 157
12208507 ATTGGATCAG
* *
12208517 ACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAG-GGGGGATCAGACCGATCCTCGACTTACG
1 ACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAGAGGGGGA-CCGACCGATCCT-GACTTATG
* * * ** *
12208581 CATTCTGCCTCTCCGATCGGCTGAGAGCCCGCATGCCCGTTTCGTGGGTTGGTTTAGGCATAGGG
64 CATTCTGCCTCTCCG-TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* *
12208646 AGTTCATTCCATGTCTAAGCCCCAG-TCGA
128 AGTTCATTCCATGTCTAAGCACCAGACCGA
* * * * *
12208675 ACCGAGGGTTATGGCAGCGGGATCGGTAGCACGCAGAGGGGGACCGCATCGATCCATGACTTGTG
1 ACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAGAGGGGGACCG-ACCGATCC-TGACTTATG
* * * * * * *
12208740 CATTATGCCTCTCCAGCCAGCTCAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGG
64 CATTCTGCCTCTCC-GTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* *
12208805 AGTTCATTTCCA-GTCTAAG-ATCAGACCGG
128 AGTTCA-TTCCATGTCTAAGCACCAGACCGA
** * * * * * * * *
12208834 ACCGAGGGTTGTGATAGCAAGATCAACAGCACACAAAGGGGGACCGGGCCGATCCCTGGCTTTTG
1 ACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAGAGGGGGACC-GACCGAT-CCTGACTTATG
* * *
12208899 CATTCTGCCTTTTCGGTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTT-ACCTTAGGCATACG
64 CATTCTGCC-TCTCCGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCATACG
12208963 GAGTTCATTCCATGTCTAAGCA
127 GAGTTCATTCCATGTCTAAGCA
12208985 TATGAAGTTC
Statistics
Matches: 250, Mismatches: 48, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
158 44 0.18
159 192 0.77
160 14 0.06
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
ACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAGAGGGGGACCGACCGATCCTGACTTATGCA
TTCTGCCTCTCCGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
TCATTCCATGTCTAAGCACCAGACCGA
Found at i:12209202 original size:26 final size:26
Alignment explanation
Indices: 12209152--12209204 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12209142 GTTGGCTTAG
*
12209152 GCATACGGAGGTCATTCCATGTCTAA
1 GCATACGGAGGTCATTCCATATCTAA
*
12209178 GCATACGGAGTTCATTCC-TAATCTAA
1 GCATACGGAGGTCATTCCAT-ATCTAA
12209204 G
1 G
12209205 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCATATCTAA
Found at i:12210202 original size:159 final size:159
Alignment explanation
Indices: 12210026--12210397 Score: 401
Period size: 158 Copynumber: 2.3 Consensus size: 159
12210016 TGAGTGCCCA
* * * *
12210026 CACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-GGA
1 CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGGA
* ** * * * *
12210090 CTGAGGGTTGTGGCAGCGGGA-CTGGCAGCACGTAGAGGGGGACCGGGCTGATCCACGGCTTGCA
66 CCGAGGGTTACGGCAGCAGGATC-GACAGCACGCAG-GGGGGACCGAGCTGATCCACGGCTTGCA
*
12210154 CATTATGCCTCTCCGACCGACTCAGCACCCG
129 CATTATGCCTCTCCAACCGACTCAGCACCCG
* * * ***
12210185 TACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATTGGATCGG
1 CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCGG
* * * * **
12210248 ACCGAGGGTTACGGTAGCAGGATCGATAGCACGCAGGGGGGATCGAGCTGATCCCCGGCTTGTGC
65 ACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCTGATCCACGGCTTGCAC
* * * **
12210313 ATTCTGCCTCTCCAACCGGCTGAGCGTCCG
130 ATTATGCCTCTCCAACCGACTCAGCACCCG
* **
12210343 CACGCTCATTTCGTGCGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAAGCA
1 CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
12210398 TGCAGAGTTC
Statistics
Matches: 173, Mismatches: 35, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.02
158 93 0.54
159 73 0.42
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGGA
CCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCTGATCCACGGCTTGCACA
TTATGCCTCTCCAACCGACTCAGCACCCG
Found at i:12210368 original size:158 final size:158
Alignment explanation
Indices: 12209895--12210395 Score: 490
Period size: 159 Copynumber: 3.2 Consensus size: 158
12209885 CCCAGTCTAA
* * * * * * *
12209895 GCATATGGGGTTCATTCC-TAGTATGAGATCGGATTGGATCGAGGGTTATGATAGCAAGATCGAC
1 GCATATGGAGTTCATTCCAT-GTCTAAGATCGGATCGGACCGAGGGTTATGGTAGCAGGATCGAC
* * * * *** *
12209959 AGCACGTA-GAGGGACCGGGCTTATCCTCGGCTTACGCATTCTGCCTCTCCGGTTGGCTGAGTGC
65 AGCACGTAGGGGGGACCGGGCTGATCCACGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* *
12210023 CCACACGCCCATTTCGTGGGTTGGCTTAG
130 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* * ** * * * * * *
12210052 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGCTGGACTGAGGGTTGTGGCAGCGGGA-CTGG
1 GCATATGGAGTTCATTCCATGTCTAAGATCGGATC-GGACCGAGGGTTATGGTAGCAGGATC-GA
* * * *
12210115 CAGCACGTAGAGGGGGACCGGGCTGATCCACGGCTTGCACATTATGCCTCTCCGACCGACTCAGC
64 CAGCACGTAG-GGGGGACCGGGCTGATCCACGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* * * *
12210180 ACCCGTACGCTCATTTCATGGGTTGACTTAG
128 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * *
12210211 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGATCGGACCGAGGGTTACGGTAGCAGGATCGAT
1 GCATATGGAGTTCATT-CCATGTCTAAGATCGGATCGGACCGAGGGTTATGGTAGCAGGATCGAC
* * * * * * *
12210275 AGCACGCAGGGGGGATCGAGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCAACCGGCTGAGCGT
65 AGCACGTAGGGGGGACCGGGCTGATCCACGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
*
12210340 CCGCACGCTCATTTCGTGCGTTGGCTTAG
130 CCGCACGCTCATTTCGTGGGTTGGCTTAG
*
12210369 GCATATAGAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCATGTCTAAG
12210396 CATGCAGAGT
Statistics
Matches: 269, Mismatches: 66, Indels: 17
0.76 0.19 0.05
Matches are distributed among these distances:
156 3 0.01
157 51 0.19
158 92 0.34
159 117 0.43
160 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCGGATCGGACCGAGGGTTATGGTAGCAGGATCGACA
GCACGTAGGGGGGACCGGGCTGATCCACGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:12211249 original size:158 final size:157
Alignment explanation
Indices: 12210762--12211262 Score: 435
Period size: 158 Copynumber: 3.2 Consensus size: 157
12210752 CCTAATCTAA
* * * *
12210762 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGA-CTGAGGGTTACGGCAGCAGGATTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCT-AGGGTTGCGGCAGCAGGATCGAC
* * * * *
12210826 AGCACGCAGGGGGGACCAAGCTGATCCTCGGCTTGCGTATTCTGCCTCTCCGG-TCGACTGAGCT
65 AGCACG-AAGGGGGACCGAGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGGCT-GACTGAG-T
*
12210890 -CCCGCACGCCCGTTTCGTGGGTT-GCGTTAG
127 ACCCGCACGCTCGTTTCGTGGGTTGGC-TTAG
* * ** * * * * * *
12210920 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCAGACCGAGGCTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCTAGGGTTGCGGCAGCAGGATCGA
* * * * * * * *
12210983 CAGCACGCAAAGGGGGACCGGGTCGATCCTCGGCTTATGCATTTTACCTCTTCGGC-CAGCTCAG
64 CAGCACG--AAGGGGGACCGAGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGGCTGA-CTGAG
* * * * *
12211047 CACCCGCATGCTCGTATCGTGGGTTGACTGT-T
126 TACCCGCACGCTCGTTTCGTGGGTTGGCT-TAG
* **
12211079 GCATACGGAGTTCATTCCCAGTCGAAGATCGGACCGGACCTAGGGTTGCGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCTAGGGTTGCGGCAGCAGGATCGACA
* * * *
12211144 GCACGTAGGAGGGATCGAGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGCTGACTGAGTACC
66 GCACGAAGG-GGGACCGAGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGGCTGACTGAGTACC
*
12211209 CGCACGTTCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
12211237 GCTTATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12211263 CCATACGAAA
Statistics
Matches: 260, Mismatches: 68, Indels: 30
0.73 0.19 0.08
Matches are distributed among these distances:
157 12 0.05
158 129 0.50
159 112 0.43
160 7 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCTAGGGTTGCGGCAGCAGGATCGACA
GCACGAAGGGGGACCGAGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGGCTGACTGAGTACCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12212866 original size:158 final size:157
Alignment explanation
Indices: 12212612--12212920 Score: 354
Period size: 158 Copynumber: 2.0 Consensus size: 157
12212602 AAGATCAGAC
* * * * * **
12212612 CGGACTGAGAGTTGTGGCAATAGGATCGGCAGCATGCAGGGGGGACCGGGCCGATCCCTGGCTTG
1 CGGACTGAGAGTTGGGGCAATAGGACCGACAGCACGCAGAGGGGACCGGGCCGATCCCCAGCTTG
* * * * * *
12212677 CACATTTTGCCTCTCTGGCCGACTGAGCGCCCGCACGCCCGTTTCGT-GCATTGGCTTAGGCATA
66 CACATTATGCCTCTCCGACCGACTCAGCGCCCGCACGCCCATTTCGTGGCA-TGACTTAGGCATA
*
12212741 AGGAGTTCATTC-CATGTCTAAGCCCAGT
130 AGAAGTTCATTCTCA-GTCTAAGCCCAGT
* * *
12212769 CGGACTGAGGGTTGGGGCAAT-GGCACCGACAGCACGCAGAAGGGGATCGGGTCGATCCCCAGCT
1 CGGACTGAGAGTTGGGGCAATAGG-ACCGACAGCACGCAG-AGGGGACCGGGCCGATCCCCAGCT
** * * *
12212833 TGCGTATTATGCCTCTCCGATCGACTCAGCGCCCGCACGCTCATTTCGTGGGATGACTTAGGCAT
64 TGCACATTATGCCTCTCCGACCGACTCAGCGCCCGCACGCCCATTTCGTGGCATGACTTAGGCAT
*
12212898 ACGAAGTTCATTCTCAGTCTAAG
129 AAGAAGTTCATTCTCAGTCTAAG
12212921 ATCAGATCGG
Statistics
Matches: 125, Mismatches: 23, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
156 2 0.02
157 31 0.25
158 88 0.70
159 4 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
CGGACTGAGAGTTGGGGCAATAGGACCGACAGCACGCAGAGGGGACCGGGCCGATCCCCAGCTTG
CACATTATGCCTCTCCGACCGACTCAGCGCCCGCACGCCCATTTCGTGGCATGACTTAGGCATAA
GAAGTTCATTCTCAGTCTAAGCCCAGT
Found at i:12213789 original size:26 final size:26
Alignment explanation
Indices: 12213739--12213791 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12213729 GTTGGCTTAG
*
12213739 GCATACGGAGCTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
*
12213765 GCATATGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
12213791 G
1 G
12213792 ATTGGACCGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:12213923 original size:184 final size:183
Alignment explanation
Indices: 12213580--12214172 Score: 584
Period size: 184 Copynumber: 3.2 Consensus size: 183
12213570 GTTGACTTAG
* ** * * *
12213580 GCATCCGGAGTTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTGTGGTAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATTGGACC-GACCAAGGGTTGCGGCAGCATGATTGACA
* * * * * * ** * *
12213645 GCACACAGGGGGGGACAAGGCCAGTCCCCGGCTTCCGCATTCTGCCTCTTTGGTC-GACTGAGCG
65 GCACACAGAGAGGGACCAGGCC-GACCCCGACTTGCGCATTCTGCCTCCCTGGCCAGGCTGAGCG
*
12213709 CCCGCACGCTTATTTCGTGGGTTGGCTTAGGCATACGGAGCTCATTCCATGTCTAA
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAG-TCATTCCATGTCTAA
* * *
12213765 GCATATGGAGCTCATTCCCAATCTAAGATTGGACCGCACCAAGGGTTGCGGCAGCATTATTGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATTGGACCG-ACCAAGGGTTGCGGCAGCATGATTGACA
** * *
12213830 GCACTGA-AGAGGGACCAGGCCGGACCCCAACTTGCGCATTCTGCCTCCCTGG-CAGGCTAAGCG
65 GCACACAGAGAGGGACCAGGCC-GACCCCGACTTGCGCATTCTGCCTCCCTGGCCAGGCTGAGCG
* * *
12213893 CCCGTACGCTCATTTCGTTGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAG-TCATTCCATGTCTAA
* * * * * *
12213949 GAATACAGAGTTCATTCCCAGTCTAATATTGGACCAGACCGAAGGTGTGGTAGCAAGACCAGTAG
1 GCATACGGAGTTCATTCCCAATCTAAGATTGGACC-GACC-AAGG-GT--T-GC--G-GCAGCA-
* * * * * **
12214014 TAGGATCGACAGCACACAGAGAGGGATCGGGCCAATCCCTGACTTGTACATTCTGCCTCTCC-GG
56 T--GATTGACAGCACACAGAGAGGGACCAGGCCGA-CCCCGACTTGCGCATTCTGCCTC-CCTGG
*
12214078 CCA-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTCCATTCCATGTC
117 CCAGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGT-CATTCCATGTC
12214142 TAA
181 TAA
*
12214145 GCATACGGAGTTCATTCCCAGTCTAAGA
1 GCATACGGAGTTCATTCCCAATCTAAGA
12214173 GTTTGAGCCA
Statistics
Matches: 334, Mismatches: 55, Indels: 27
0.80 0.13 0.06
Matches are distributed among these distances:
183 1 0.00
184 126 0.38
185 64 0.19
186 2 0.01
188 1 0.00
189 2 0.01
191 1 0.00
192 4 0.01
193 1 0.00
195 13 0.04
196 115 0.34
197 4 0.01
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCCAATCTAAGATTGGACCGACCAAGGGTTGCGGCAGCATGATTGACAG
CACACAGAGAGGGACCAGGCCGACCCCGACTTGCGCATTCTGCCTCCCTGGCCAGGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTCATTCCATGTCTAA
Found at i:12214155 original size:26 final size:26
Alignment explanation
Indices: 12214119--12214171 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12214109 GTTGGCTTAG
12214119 GCATACGGAGTCCATT-CCATGTCTAA
1 GCATACGGAGTCCATTCCCA-GTCTAA
*
12214145 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
12214171 G
1 G
12214172 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:12215219 original size:159 final size:158
Alignment explanation
Indices: 12214916--12215359 Score: 470
Period size: 159 Copynumber: 2.8 Consensus size: 158
12214906 CCTAGGGTAG
* * * * *
12214916 GATCGGCAGCACGT-AGGGGGACCGGGTCGATCCTCGACTTGTGTATTCTGCCTCTCCGACCGGC
1 GATCGACAGCACATAAGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGATCGGC
* * * *
12214980 TGAGCACCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA-GGTAGTTCATTCCATGTCT-AAG
66 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG-AGTTCATTCCATGTCTAAAA
* * **
12215043 TCCCAGTCGGACCGAGGGTTGTGGCAGCGG
130 T-CCAGCCGGACCGAGGGTTGCGGCAGCAA
* * * * * * *
12215073 GA-CTGACAGTGCACA-GAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTTTCCGGTC
1 GATC-GACA--GCACATAAGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGATC
* * * **
12215136 GGCTCAGCGCCCACACGCTCGTTTTGTGGGTTAACTTAGGCATACGGAGTTCATTCCCA-GTCTA
63 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTA
*
12215200 AAAT-CAGACCGGATCGAGGGTTGCGGCAGCAA
127 AAATCCAG-CCGGACCGAGGGTTGCGGCAGCAA
* * * *
12215232 GATCGATAGCACATAAGGGGGGACCAGGACGGTCCTCGACTTGCGCATTCTGCCTCTCCGATCGG
1 GATCGACAGCACATAA-GGGGGACCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGATCGG
* * *
12215297 TTGAGTGCCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
65 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
12215360 GCATACAAAG
Statistics
Matches: 231, Mismatches: 44, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
156 1 0.00
157 10 0.04
158 7 0.03
159 204 0.88
160 9 0.04
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GATCGACAGCACATAAGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGATCGGC
TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAAAT
CCAGCCGGACCGAGGGTTGCGGCAGCAA
Found at i:12215749 original size:26 final size:26
Alignment explanation
Indices: 12215712--12215790 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
12215702 GTTGACTTAG
12215712 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12215738 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12215764 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12215790 G
1 G
12215791 ATCGGATCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12216264 original size:26 final size:26
Alignment explanation
Indices: 12216212--12216264 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12216202 GTTGGCTTAG
*
12216212 GCATATGGAGTTCATTCCATGTTTAA
1 GCATATGGAGTTCATTCCATGTCTAA
12216238 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATATGGAGTTCATT-CCATGTCTAA
12216264 G
1 G
12216265 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCATGTCTAA
Found at i:12216439 original size:26 final size:26
Alignment explanation
Indices: 12216403--12216455 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12216393 GTTGACTTAG
12216403 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12216429 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12216455 G
1 G
12216456 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12217730 original size:26 final size:26
Alignment explanation
Indices: 12217694--12217746 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12217684 GTTGACTTAG
*
12217694 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
12217720 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12217746 G
1 G
12217747 ATCTAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12217905 original size:185 final size:185
Alignment explanation
Indices: 12217586--12217932 Score: 466
Period size: 185 Copynumber: 1.9 Consensus size: 185
12217576 GCAGGACCAC
* * * *
12217586 CAGCAGGATCGGTAGCACAGAAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTTC
1 CAGCAGGATCAGTAGCACAGAAGGGGGGATCGGGTCAATCACCGGCTTGCGCATTCTACCTCTCC
* * * * ** *
12217651 GGCCGGCTGAGTGCCCGCACACTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
66 GACCAGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATAAAGACTTCATCCCCAGT
12217716 CTAAGCATAC-AGAGTTCATTCCCAGTCTAAGATCTAATCGGACTGAGGGTTGTGG
131 CTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCTAATCGGACTGAGGGTTGTGG
* ** *
12217771 CAGCAGGATCAGTAGCAC-GCAGAGGGGGATCGGGTCAATCATTGGCTTGCGCATTCTGCCTCTC
1 CAGCAGGATCAGTAGCACAGAAG-GGGGGATCGGGTCAATCACCGGCTTGCGCATTCTACCTCTC
** * * *
12217835 CGACCAGCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATAAAGACTTCA-CTCCAT
65 CGACCAGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATAAAGACTTCATCCCCA-
12217899 GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
129 GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
12217933 GTTTGAGCCA
Statistics
Matches: 139, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
184 7 0.05
185 131 0.94
186 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (185 bp):
CAGCAGGATCAGTAGCACAGAAGGGGGGATCGGGTCAATCACCGGCTTGCGCATTCTACCTCTCC
GACCAGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATAAAGACTTCATCCCCAGT
CTAAGCATACGAAGTTCATTCCCAGTCTAAGATCTAATCGGACTGAGGGTTGTGG
Found at i:12218560 original size:26 final size:26
Alignment explanation
Indices: 12218523--12218575 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12218513 GCTGACTTAG
*
12218523 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
12218549 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12218575 G
1 G
12218576 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12219598 original size:26 final size:26
Alignment explanation
Indices: 12219562--12219614 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12219552 GTTGAGTTAG
12219562 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12219588 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12219614 G
1 G
12219615 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12219933 original size:26 final size:26
Alignment explanation
Indices: 12219904--12219956 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12219894 GTTAGCTTAG
12219904 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12219930 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12219956 G
1 G
12219957 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12220663 original size:26 final size:26
Alignment explanation
Indices: 12220627--12220679 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12220617 GTTAACTTAG
*
12220627 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
12220653 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12220679 G
1 G
12220680 ATCGAATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12221017 original size:26 final size:26
Alignment explanation
Indices: 12220981--12221033 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12220971 GTTGACTTAG
* *
12220981 GCATATGGAGTTCATCCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12221007 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12221033 G
1 G
12221034 ATTAAAATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12221361 original size:158 final size:159
Alignment explanation
Indices: 12221007--12221402 Score: 367
Period size: 158 Copynumber: 2.5 Consensus size: 159
12220997 CCCAGTGTAA
* * * *
12221007 GCATACGGAGTTCATTCCCAGTCTAAGATTAAAAT-GGATCGAGGGTTGTCGCAGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TCAGATCGGATCGAGGGTTGTCGCAGCAGGACCGAC
* * ** * * * * *
12221071 AGCATGCAGGAGGGACCAGGGCCGATCCCTGGCTTATGCATTCTGCCTCTTTGGTCGGTTAAGCA
65 AGCACGCAGGAGGGACCAGGGCCGATCCCCGGCTTACACATTATGCCTCTCTAGTCCGCTAAGCA
* *
12221136 CCCGCACGCCCATTTCGTGGGTTGGCTTAG
130 CCCGCACGCCCATTTCCTGGGTTGACTTAG
** * * *
12221166 GCATAAAGAGTTCATT-CCATGTTTAAGCCA-CAG-TCGGACCGAGGGTTGTGGCAGC-GAGACC
1 GCATACGGAGTTCATTCCCA-GTCTAAG--ATCAGATCGGATCGAGGGTTGTCGCAGCAG-GACC
* * *
12221227 GACAGCACGCAGAGGGGGACCA-GGCCGATCCCCGGCTTGCACATTATGCCTCTCTAG-CCGCTC
62 GACAGCACGCAG-GAGGGACCAGGGCCGATCCCCGGCTTACACATTATGCCTCTCTAGTCCGCTA
* * ***
12221290 ATCCCCCGCACGCTTGTTTCCTGGGTTGACTTAG
126 AGCACCCGCACGCCCATTTCCTGGGTTGACTTAG
* * * *
12221324 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTG-CGGTAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTC-GCAGCAGGACCGAC
* *
12221388 AGCACGTAGGGGGGA
65 AGCACGCAGGAGGGA
12221403 TTGGGTGGTC
Statistics
Matches: 188, Mismatches: 38, Indels: 24
0.75 0.15 0.10
Matches are distributed among these distances:
156 1 0.01
157 9 0.05
158 85 0.45
159 84 0.45
160 8 0.04
161 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.22
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTCGCAGCAGGACCGACA
GCACGCAGGAGGGACCAGGGCCGATCCCCGGCTTACACATTATGCCTCTCTAGTCCGCTAAGCAC
CCGCACGCCCATTTCCTGGGTTGACTTAG
Found at i:12221517 original size:26 final size:26
Alignment explanation
Indices: 12221481--12221533 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12221471 GTTGGCTTAG
12221481 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12221507 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12221533 G
1 G
12221534 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12221891 original size:26 final size:26
Alignment explanation
Indices: 12221861--12221911 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12221851 GTTGACTTAG
12221861 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12221887 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
12221912 GGATCAGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12223417 original size:26 final size:26
Alignment explanation
Indices: 12223388--12223440 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12223378 GTTGACTTAG
*
12223388 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12223414 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12223440 G
1 G
12223441 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12223871 original size:159 final size:156
Alignment explanation
Indices: 12223414--12223914 Score: 508
Period size: 159 Copynumber: 3.2 Consensus size: 156
12223404 CCCAGTCTAA
* * * * *
12223414 GCATACGGAGTTCATTCCCA-GTTTAAGATCAGACCAGACCGAAGGTTACGGCAACAAGATCGAC
1 GCATATGGAGTTCATT-CCATGTCTAAGATCAGACC-GACCGAGGGTTGCGGCAGCAAGATCGAC
* * * **
12223478 AGCACGCAGGGGGGATCGGGTCGATCCTCGGCTTGCACATTCTGCCTCTTCGGTCGGCTGAGTGC
64 AGCACGCAGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGG-CCGCTGAGCAC
* * * *
12223543 CCGCACGCCCATTTCGTGGGTCGGCTTAG
128 CCGAACGCTCGTTTCGTGGGTTGGCTTAG
* ** * ** **
12223572 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCGACCG-GGGTTGTGGCAGCGGGATCGGTA
1 GCATATGGAGTTCATTCCATGTCTAAG-ATCAGACCGACCGAGGGTTGCGGCAGCAAGATCGACA
* * * * *
12223635 GCACACAGAGGGGGATCGGGTCGATCCTCGGCTTGCGTATTATGCCTTTCCGGCCTGCTCAGCAC
65 GCACGCAG-GGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCC-GCTGAGCAC
* *
12223700 CCAAACGCTCGTTTCGTGGGTTGACTTAG
128 CCGAACGCTCGTTTCGTGGGTTGGCTTAG
* *
12223729 GCATATGGAGTTCATTCCGA-GTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAAGATCGAC
1 GCATATGGAGTTCATTCC-ATGTCTAAGATCAGACC-GACCGAGGGTTGCGGCAGCAAGATCGAC
* * * * * *
12223793 AGCACGCAGGGGTGGATCGAGCCGTTCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCA
64 AGCACGCAGGGG-GGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCG-CTGAGCA
* **
12223858 CCCGTACATTCGTTTC-TCGGGTTGGCTTAG
127 CCCGAACGCTCGTTTCGT-GGGTTGGCTTAG
12223888 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCATGTCTAAG
12223915 CATACGGAGT
Statistics
Matches: 277, Mismatches: 54, Indels: 23
0.78 0.15 0.06
Matches are distributed among these distances:
156 25 0.09
157 103 0.37
158 35 0.13
159 114 0.41
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCAGACCGACCGAGGGTTGCGGCAGCAAGATCGACAG
CACGCAGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGCTGAGCACCCG
AACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12223939 original size:26 final size:26
Alignment explanation
Indices: 12223888--12223940 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12223878 GTTGGCTTAG
* *
12223888 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGACTAA
12223914 GCATACGGAGTTCATTCCCA-GACTAA
1 GCATACGGAGTTCATT-CCATGACTAA
12223940 G
1 G
12223941 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGACTAA
Found at i:12224324 original size:26 final size:26
Alignment explanation
Indices: 12224294--12224346 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12224284 GTTGACTTAG
12224294 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
12224320 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12224346 G
1 G
12224347 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12224398 original size:197 final size:197
Alignment explanation
Indices: 12224063--12224432 Score: 508
Period size: 197 Copynumber: 1.9 Consensus size: 197
12224053 TGGTCAGTTT
* * * *
12224063 AGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTTTAAGAGTA
1 AGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGAGTA
* *
12224128 CGAAGTTCATTCCCAGTCTAAGATCGAACCAAACTGAGGGTTACGACAGCAAGATCGGCAACACG
66 CGAAGTTCATTCCCAGTCTAAGATCGAACCAAACCGAGAGTTACGACAGCAAGATCGGCAACACG
* * * *
12224193 TAGGGGGGACCGGGCCTATCCCTGGCTTGCGCATTCTGCCTCTTCGGCCGTCCTCTCCGATTGAC
131 TAGGGGGGACCGGACCGATCCCCGGCTCGCGCATTCTGCCTCTTCGGCCGTCCTCTCCGATTGAC
12224258 TA
196 TA
* * *
12224260 AGCACCCGCATGCTCGTTTCATTGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA-T
1 AGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAG-AGT
* * ** * ** *
12224324 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGCGAGTTGTGGCAGCAAGATCGGCAACAC
65 ACGAAGTTCATTCCCAGTCTAAGATCGAACCAAACCGAGAGTTACGACAGCAAGATCGGCAACAC
* * *
12224389 TTGGGGGGGATCGGACCGATCCCCGGCTCGCGCATTCTGCCTCT
130 GTAGGGGGGACCGGACCGATCCCCGGCTCGCGCATTCTGCCTCT
12224433 CTGATCGGTT
Statistics
Matches: 148, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
197 147 0.99
198 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23
Consensus pattern (197 bp):
AGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGAGTA
CGAAGTTCATTCCCAGTCTAAGATCGAACCAAACCGAGAGTTACGACAGCAAGATCGGCAACACG
TAGGGGGGACCGGACCGATCCCCGGCTCGCGCATTCTGCCTCTTCGGCCGTCCTCTCCGATTGAC
TA
Found at i:12225388 original size:25 final size:26
Alignment explanation
Indices: 12225359--12225410 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
12225349 GTTAACTTAG
*
12225359 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12225384 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12225410 G
1 G
12225411 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12225701 original size:159 final size:158
Alignment explanation
Indices: 12225479--12225888 Score: 398
Period size: 158 Copynumber: 2.6 Consensus size: 158
12225469 CGATCCTCGG
* * * ** * * * *
12225479 CTTACGCATTCTGCCTCTTCGGTCGGTTGAGCGCTCCGCACGCCCATTTCGTGGGTTGGCTTAGG
1 CTTACGCATTATGCCTCTCCGCTCGACTGAGCAC-CTGCACGCTCGTTTCGTGGGTTGGCTTAGG
* * * * * ** * *
12225544 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGTA-GGATCGAGGGTTGTGGTAGTGGGATCGACA
65 CATACGGAGTTCATTCCATGTCTAAGCACCAG-ACAGACCGAGGGTTGCGACAATAGGATCGACA
* * *
12225608 GCACGCAGAGGGGGACCGGA-CTGATCCCTGG
129 GCACGCAG-GGGGGACAGGACCAG-TCCCTGA
* * * * * *
12225639 CTTGCGCATTATGCCTCTCCGACT-GGCTTAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGG
1 CTTACGCATTATGCCTCTCCG-CTCGACTGAGCACCTGCACGCTCGTTTCGTGGGTTGGCTTAGG
* *
12225703 CATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCGACAATAGGATGGAC
65 CATACGGAGTTCATT-CCATGTCTAAGCACCAGA-CAGACCGAGGGTTGCGACAATAGGATCGAC
* * *
12225766 AGCACGTAGGGGGGATAGGGCCAGTCCCTGA
128 AGCACGCAGGGGGGACAGGACCAGTCCCTGA
* * * *
12225797 CTTACGCTTTCTGCCTCTCCGGTCGACTGAGCACCTGCACGCTTGTTTCGTGGGTTGGCTTAGGC
1 CTTACGCATTATGCCTCTCCGCTCGACTGAGCACCTGCACGCTCGTTTCGTGGGTTGGCTTAGGC
12225862 ATACGGAGTTCATTCCATGTCTAAGCA
66 ATACGGAGTTCATTCCATGTCTAAGCA
12225889 TACAGAGTTC
Statistics
Matches: 204, Mismatches: 38, Indels: 17
0.79 0.15 0.07
Matches are distributed among these distances:
157 5 0.02
158 91 0.45
159 78 0.38
160 29 0.14
161 1 0.00
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
CTTACGCATTATGCCTCTCCGCTCGACTGAGCACCTGCACGCTCGTTTCGTGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGCACCAGACAGACCGAGGGTTGCGACAATAGGATCGACAGC
ACGCAGGGGGGACAGGACCAGTCCCTGA
Found at i:12225896 original size:26 final size:26
Alignment explanation
Indices: 12225860--12225912 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12225850 GTTGGCTTAG
*
12225860 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12225886 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12225912 G
1 G
12225913 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12226557 original size:159 final size:160
Alignment explanation
Indices: 12226372--12226743 Score: 441
Period size: 159 Copynumber: 2.3 Consensus size: 160
12226362 GAACCCCCAC
* *
12226372 ACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGAC
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACTGGAC
* * * * *
12226436 CGAGGGTTGTGGCAGCAGGACCGATAGCACGTAGAGAAGGATC-GAG-TCGATCCTC-AGCTTGT
66 CGAGGGTTATGGCAGCAGGACCGACAGCACGCAGAGAAGGACCAG-GCCCG-TCC-CAAGCTTGT
* * * **
12226498 TCATTATGCCTCTCCGGCCGGCTCAGTGCCCGA
128 GCATTATGCCTCTCCGACCAGCAAAGTGCCCGA
* * * *
12226531 ACGCTCGATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGA
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACTGGA
* * **
12226594 CCGAGGGTTATGGTAGCAGGATCGACAGCACGCAGAGGGGGACCAGGCCCGTCCCAAGCTTGTGC
65 CCGAGGGTTATGGCAGCAGGACCGACAGCACGCAGAGAAGGACCAGGCCCGTCCCAAGCTTGTGC
* * * *
12226659 CTTCTGCCTCTCCGACCAGCAAAGTGCCTGC
130 ATTATGCCTCTCCGACCAGCAAAGTGCCCGA
*
12226690 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCA
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
12226744 TACGGAGTTC
Statistics
Matches: 178, Mismatches: 28, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
158 6 0.03
159 165 0.93
160 7 0.04
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (160 bp):
ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACTGGAC
CGAGGGTTATGGCAGCAGGACCGACAGCACGCAGAGAAGGACCAGGCCCGTCCCAAGCTTGTGCA
TTATGCCTCTCCGACCAGCAAAGTGCCCGA
Found at i:12226745 original size:26 final size:26
Alignment explanation
Indices: 12226715--12226767 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12226705 GTTGGCTTAG
12226715 GCATACGGAGTTCATTCAATGTCTAA
1 GCATACGGAGTTCATTCAATGTCTAA
*
12226741 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCAATGTCTAA
12226767 G
1 G
12226768 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCAATGTCTAA
Found at i:12227104 original size:26 final size:26
Alignment explanation
Indices: 12227074--12227126 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
12227064 GTTGACTTTG
12227074 GCATAC-GAAGTTCA-TCTCCAGTCTAA
1 GCATACAG-AGTTCAGTC-CCAGTCTAA
12227100 GCATACAGAGTTCAGTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
12227126 G
1 G
12227127 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAGTCCCAGTCTAA
Found at i:12228340 original size:159 final size:156
Alignment explanation
Indices: 12228041--12228459 Score: 432
Period size: 159 Copynumber: 2.6 Consensus size: 156
12228031 ACCACCCGTT
* * * * * *
12228041 CGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCTGGCTGAGCGCCTGCACGCACGTTTCGTTGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGC-CGCTGAACGCCCGCACGCTCGTTTC-ATGGT
* * * * * * * * *
12228106 TGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGTAGCGG
64 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGACCAAGGGGTGCGGTAACAG
* *
12228171 GACTGGCAGCACGCAGAAGGGGA-CAGGGC
129 GACTGACAGCACACA-AAGGGGACCA-GGC
* * * *
12228200 CGATCCCCGGCTTGCACATTATGCCTCTCCGGCCAGCTCAATGCCCGCACGCTCGTTTCATGGTT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCC-GCTGAACGCCCGCACGCTCGTTTCATGG-T
* *
12228265 TGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCAAGGGGTGCGGTAAC
64 TGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCGGACCAAGGGGTGCGGTAAC
*
12228328 AGGA-TCGACAGCACACAAGGGGGACCAGGC
127 AGGACT-GACAGCACACAAAGGGGACCAGGC
* * ** * * *
12228358 TGGTCCCCAACTTGCGCATTCTGCCTCTCCGACCGACTGAACGCCCGTACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCG-CTGAACGCCCGCACGCTCGTTTCAT-GGT
12228423 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
64 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
12228460 TATGGACTTC
Statistics
Matches: 214, Mismatches: 36, Indels: 20
0.79 0.13 0.07
Matches are distributed among these distances:
157 4 0.02
158 95 0.44
159 112 0.52
160 3 0.01
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.22
Consensus pattern (156 bp):
CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGCTGAACGCCCGCACGCTCGTTTCATGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGACCAAGGGGTGCGGTAACAGGA
CTGACAGCACACAAAGGGGACCAGGC
Found at i:12228690 original size:26 final size:26
Alignment explanation
Indices: 12228640--12228692 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12228630 GTTGGCTTAG
*
12228640 GCATATAGAGTTCATTCCATGTCTAA
1 GCATATAGAGTTCATTCCATATCTAA
12228666 GCATATAGAGTTCATTCCCA-ATCTAA
1 GCATATAGAGTTCATT-CCATATCTAA
12228692 G
1 G
12228693 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCATATCTAA
Found at i:12228861 original size:26 final size:26
Alignment explanation
Indices: 12228825--12228877 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12228815 GTTGACTTAG
12228825 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
12228851 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
12228877 G
1 G
12228878 ATTGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:12229119 original size:160 final size:160
Alignment explanation
Indices: 12228906--12229197 Score: 444
Period size: 160 Copynumber: 1.8 Consensus size: 160
12228896 TTACGGTAGT
* * * *
12228906 AGGATCGGCAGTATGTAAGGGGGACCGGGCCGATCCCTGACCTACGCATTCTGCCTCTTCGATCG
1 AGGACCGGCAGCACGTAAGGGGGACCGGGCCGATCCCTGACCTACGCATTCTGCCTCTTCGACCG
* * *
12228971 GCTT-AGCGCCCGCAC-GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTA
66 G-TTGAGCGCCCGCACAACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
12229034 AGCCCGTAGCCCGACCGAGGGTTGTGGCAGC
130 AGCCCGTAGCCCGACCGAGGGTTGTGGCAGC
* * *
12229065 AGGACCGGCAGCACGTAGAGGGGGACCGGGCCGATCCCTGACTTGCGTATTCTGCCTCTTCGACC
1 AGGACCGGCAGCACGTA-AGGGGGACCGGGCCGATCCCTGACCTACGCATTCTGCCTCTTCGACC
* *
12229130 GGTTGAGCGCCCGCACAACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
65 GGTTGAGCGCCCGCACAACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
12229195 AGC
130 AGC
12229198 ATACGAAGTT
Statistics
Matches: 118, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
159 16 0.14
160 56 0.47
161 46 0.39
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.23
Consensus pattern (160 bp):
AGGACCGGCAGCACGTAAGGGGGACCGGGCCGATCCCTGACCTACGCATTCTGCCTCTTCGACCG
GTTGAGCGCCCGCACAACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCCCGTAGCCCGACCGAGGGTTGTGGCAGC
Found at i:12229207 original size:26 final size:26
Alignment explanation
Indices: 12229170--12229222 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12229160 GTTGGCTTAG
*
12229170 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
12229196 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12229222 G
1 G
12229223 AGGTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12230241 original size:159 final size:159
Alignment explanation
Indices: 12230011--12230383 Score: 367
Period size: 159 Copynumber: 2.3 Consensus size: 159
12230001 GAGCGGCAGC
* * *
12230011 ACGCCCGTTTCGTGGGTTGGCTTAGGCATTA-GGAGTTCATTCCATATCTAAGCCCCAGCTGGAC
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCA-TACGGAGTTCATTCCATATCTAAGCACCAGATGGAC
* *** * ** * * * * *
12230075 TGAGGGTTGTGGTAGCAGGATAGGCAGCACAC-AGATGGGGACCAGGTCGATCCCTGGCTTGCGC
65 CGAGGGTTACAGTAGCAAGATACACAGCACACAAG-GGGGGACCAGGCCGATCCCCGACTTACGC
* * *
12230139 ATTATGCCTCTCCGATCGACTCAATGCCCGA
129 ATTATACCTCTCCGATCAACTCAACGCCCGA
* * * *
12230170 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC-TGGTCTAAG-ATCAGATGAGA
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-ATCTAAGCACCAGATG-GA
* * * * *
12230233 CCGAGGGTTACAGTAGCAAGATCCACAGCACCCAAGGGGGGATCGGGCCGATCCCCGACTTACGT
64 CCGAGGGTTACAGTAGCAAGATACACAGCACACAAGGGGGGACCAGGCCGATCCCCGACTTACGC
* * * *
12230298 ATTCTACCTCTCCGATCAACTGAGCGCCCGT
129 ATTATACCTCTCCGATCAACTCAACGCCCGA
* * *
12230329 ACGCTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTTTAAGCA
1 ACGC-TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGCA
12230384 TACGGAGTTC
Statistics
Matches: 172, Mismatches: 35, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
158 8 0.05
159 118 0.69
160 44 0.26
161 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (159 bp):
ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGCACCAGATGGACC
GAGGGTTACAGTAGCAAGATACACAGCACACAAGGGGGGACCAGGCCGATCCCCGACTTACGCAT
TATACCTCTCCGATCAACTCAACGCCCGA
Found at i:12230407 original size:26 final size:26
Alignment explanation
Indices: 12230355--12230407 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
12230345 GTTGGCTTAG
* *
12230355 GCATACGGAGTACATTCCATGTTTAA
1 GCATACGGAGTACATTCCATATCTAA
*
12230381 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTACATT-CCATATCTAA
12230407 G
1 G
12230408 ATTAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTACATTCCATATCTAA
Found at i:12230569 original size:26 final size:26
Alignment explanation
Indices: 12230539--12230591 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12230529 CTTGGCTTAG
*
12230539 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCACA-GTCTAA
12230565 GCATACGAAGTTCATTCACAGTCTAA
1 GCATACGAAGTTCATTCACAGTCTAA
12230591 G
1 G
12230592 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCACAGTCTAA
Found at i:12230579 original size:184 final size:185
Alignment explanation
Indices: 12230195--12230632 Score: 508
Period size: 184 Copynumber: 2.4 Consensus size: 185
12230185 GTTGACTTAG
** * * *
12230195 GCATACGGAGTTCATTCCTGGTCTAAGATCAGATGAGACCGAGGGTTACAGTAGCAAGATCCACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACG-GACCGAGGGTTACGGTAGCAAGATCCACA
* * *
12230260 GCACCCAAGGGGGGATCGGGCCGATCCCCGACTTACGTATTCTACCTCTCCGATCAACTGAGCGC
65 GCACCCAAGGGGGGACCGGGCCGATCCCCGACTTACGTAATCTACCTCTCCGACCAACTGAGCGC
** * * * *
12230325 CCGTACGCTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTTTAA
130 CCACACACTTCGTTTCATGGCTTGGCTTAGGCATACGGAGTACATTCCATGTCTAA
* * * *
12230381 GCATACGGAGTTCATTCCCAATCTAAGATTAGACCGGACTGAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGA-CGGACCGAGGGTTACGGTAGCAAGATCCACA
** * * * * * *
12230446 GCACGTAAGGGGTGGACCTGGCCGAT-CCCGGCTTGCG-AATCTGCCTCTTCGACCAGCTGAGCG
65 GCACCCAAGGGG-GGACCGGGCCGATCCCCGACTTACGTAATCTACCTCTCCGACCAACTGAGCG
*
12230509 CCCACACACTT-GTTTCATGGCTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
129 CCCACACACTTCGTTTCATGGCTTGGCTTAGGCATACGGAGTACATTCCATGTCTAA
* * * *
12230565 GCATACGAAGTTCATTCACAGTCTAAGATTGGATCGGACCAAGGGTTGA-GGTAGCAAGA-CCAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGA-CGGACCGAGGGTT-ACGGTAGCAAGATCCA-
12230628 CAGCA
63 CAGCA
12230633 GGACCGACAG
Statistics
Matches: 212, Mismatches: 36, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
183 2 0.01
184 95 0.45
185 30 0.14
186 73 0.34
187 12 0.06
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTAGACGGACCGAGGGTTACGGTAGCAAGATCCACAG
CACCCAAGGGGGGACCGGGCCGATCCCCGACTTACGTAATCTACCTCTCCGACCAACTGAGCGCC
CACACACTTCGTTTCATGGCTTGGCTTAGGCATACGGAGTACATTCCATGTCTAA
Found at i:12231476 original size:26 final size:26
Alignment explanation
Indices: 12231447--12231539 Score: 177
Period size: 26 Copynumber: 3.6 Consensus size: 26
12231437 GTTGACTTAG
12231447 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12231473 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12231499 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12231525 GCATACGGAGTTCAT
1 GCATACGGAGTTCAT
12231540 TCCAGTGTAA
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 65 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12231755 original size:26 final size:25
Alignment explanation
Indices: 12231725--12231828 Score: 129
Period size: 26 Copynumber: 4.0 Consensus size: 25
12231715 GTTGACTTAG
* *
12231725 GCATATGGAGTTCATCACCAATCTAA
1 GCATACGGAGTTCATC-CCAGTCTAA
12231751 GCATAC-GAGTTCATCCTCAGTCTAA
1 GCATACGGAGTTCATCC-CAGTCTAA
*
12231776 GCATACAGAGTTCATCTCCAGTCTAA
1 GCATACGGAGTTCATC-CCAGTCTAA
*
12231802 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCA-TCCCAGTCTAA
12231828 G
1 G
12231829 ATCAGACCGA
Statistics
Matches: 70, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
24 1 0.01
25 22 0.31
26 44 0.63
27 3 0.04
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:12231979 original size:247 final size:249
Alignment explanation
Indices: 12231473--12232024 Score: 595
Period size: 247 Copynumber: 2.2 Consensus size: 249
12231463 CCCAGTCTAA
* * *
12231473 GCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
1 GCATATGGAGTTCATCACCAGTCTAAGCATACAGAGTTCAT-CCCAGTCTAAGCATACAGAGTTC
* * * * *
12231538 ATTCCAGTGTAAGATCGGACCGGAGTTCATTCCATGTCTAGGCCCCAGTCGGACCGAGGGTTGTG
65 ATTCCAGTCTAAGAT--GACCGGAGTTCATTCCATGTCTAAGCACCAGCCGAACCGAGGGTTGTG
* * * * ** * *
12231603 GCAGTAGGACCGACAGCGGGATCGACAGCAAGCAGAAGGGGTACCAGGCTGATCCCTGGCTTGTG
128 ACAGTAGGACCGACAACAGGATCGACAGCAAGCAGAAGGGGGACCAGGCCAATCCCCGGCTTGCG
* * * *
12231668 CATTCTGCCTCTCCGGTCGGCTGAGTGCCTGTACGCTCATTTCATGGGTTGACTTAG
193 CATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCAGTTCATGGGTTGACTTAG
*
12231725 GCATATGGAGTTCATCACCAATCTAAGCATAC-GAGTTCATCCTCAGTCTAAGCATACAGAGTTC
1 GCATATGGAGTTCATCACCAGTCTAAGCATACAGAGTTCATCC-CAGTCTAAGCATACAGAGTTC
* *
12231789 ATCTCCAGTCTAAGCAT-A-CGGAGTTCATTCC-TAGTCTAAG-ATCAGACCGAACTGAGGGTTG
65 AT-TCCAGTCTAAG-ATGACCGGAGTTCATTCCAT-GTCTAAGCACCAG-CCGAACCGAGGGTTG
* * *
12231850 TGATAGTAGGACC-AGCAACAGGATC-AGTAGCACA-CAG-GGGGGGACCAGGCCAATCCCCGGC
126 TGACAGTAGGACCGA-CAACAGGATCGA-CAGCA-AGCAGAAGGGGGACCAGGCCAATCCCCGGC
* * * * * *
12231911 TTGCGTATTTTGCCT-TTCGGTCGGCTGAGCGCCCGCACGCTCGGTTCGTGGGTTGGCTTAG
188 TTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCAGTTCATGGGTTGACTTAG
* * *
12231972 GCATATGGAGTTCAT-TCCATGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAG
1 GCATATGGAGTTCATCACCA-GTCTAAGCATACAGAGTTCA-TCCCAGTCTAAG
12232025 ATTTTAAGCC
Statistics
Matches: 254, Mismatches: 35, Indels: 26
0.81 0.11 0.08
Matches are distributed among these distances:
246 3 0.01
247 63 0.25
248 53 0.21
249 60 0.24
250 4 0.02
251 30 0.12
252 39 0.15
253 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (249 bp):
GCATATGGAGTTCATCACCAGTCTAAGCATACAGAGTTCATCCCAGTCTAAGCATACAGAGTTCA
TTCCAGTCTAAGATGACCGGAGTTCATTCCATGTCTAAGCACCAGCCGAACCGAGGGTTGTGACA
GTAGGACCGACAACAGGATCGACAGCAAGCAGAAGGGGGACCAGGCCAATCCCCGGCTTGCGCAT
TCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCAGTTCATGGGTTGACTTAG
Found at i:12232001 original size:26 final size:26
Alignment explanation
Indices: 12231972--12232024 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12231962 GTTGGCTTAG
*
12231972 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12231998 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12232024 G
1 G
12232025 ATTTTAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12233250 original size:158 final size:160
Alignment explanation
Indices: 12232822--12233251 Score: 437
Period size: 158 Copynumber: 2.7 Consensus size: 160
12232812 CGGCTTGCAA
* * * * *
12232822 ATTCTGCCTCTCCGACCGGCTAAGCACCTGCATGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGG
1 ATTCTGCCTCTCCGATCGGCTAAGCGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGG
* * * *
12232886 AGTTCATTCCATGTCTAAGCCCCAGCCAGACCTATGGTTATGGCAGC-GAGACCGACAACACACA
65 AGTTCATTCCATGTCTAAGCTCCAGACAGACCGAGGGTTATGGCAGCAGAGACCGACAACACACA
* *
12232950 GAGGGGGATCGGGCCGATCCCTTGCTTGCGC
130 GAGGGGGATCGGGCCGATCCCTCGCTTACGC
* * * * * **
12232981 ATTATGCCTCTCCGATCAGCTCAA-CGTCCGCACGCTCATTTCGTGGGTTGACTTATTCATACGG
1 ATTCTGCCTCTCCGATCGGCT-AAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * * * * * * *
12233045 AGTTCATTCCCA-GTCTAAGATCGA-ACTAGACGGAGGGTTACGACAGCAG-GATCGACAGCACG
65 AGTTCATT-CCATGTCTAAGCTCCAGAC-AGACCGAGGGTTATGGCAGCAGAGACCGACAACACA
12233107 CAG-GGGGGATCGGGCC-AGTCCC-CGACTTACGC
128 CAGAGGGGGATCGGGCCGA-TCCCTCG-CTTACGC
* * *
12233139 ATTCTGCCTCTCCAATCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGA
1 ATTCTGCCTCTCCGATCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
* * * * *
12233204 GTTCATTCCATTTCTAAGCTCCAGTCGGACCGAGGGGTGTGGCAGCAG
66 GTTCATTCCATGTCTAAGCTCCAGACAGACCGAGGGTTATGGCAGCAG
12233252 CACCGGTAGC
Statistics
Matches: 215, Mismatches: 46, Indels: 21
0.76 0.16 0.07
Matches are distributed among these distances:
157 6 0.03
158 109 0.51
159 93 0.43
160 7 0.03
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (160 bp):
ATTCTGCCTCTCCGATCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCTCCAGACAGACCGAGGGTTATGGCAGCAGAGACCGACAACACACAG
AGGGGGATCGGGCCGATCCCTCGCTTACGC
Found at i:12234076 original size:26 final size:26
Alignment explanation
Indices: 12234026--12234078 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12234016 GTTGGCTTAG
*
12234026 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
12234052 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
12234078 G
1 G
12234079 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:12234441 original size:25 final size:26
Alignment explanation
Indices: 12234406--12234456 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
12234396 GTTGACTTAG
*
12234406 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12234431 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12234457 TATCAAACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12234911 original size:158 final size:158
Alignment explanation
Indices: 12234431--12234932 Score: 489
Period size: 158 Copynumber: 3.2 Consensus size: 158
12234421 CCCAGTCTAA
* * * * *
12234431 GCATACAGAGTTCATTCCCA-GTCTAATATCAAACTGGACCGAGGGTTGCGACAGTCA-GATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACAGGACCGAGGGTTGCGGCAG-CAGGAT-GG
* * * * *
12234494 -CAGCACGCATGGGGGACCGGGTCGATCCTTGACTTACGCATTCTGCCTC-TCTGACCGACTGAG
63 ACAGCACGCAGGGGGGACCAGGTCGATCCCTGGCTTACGCATTCTGCCTCTTC-GATCGACTGAG
* * *
12234557 TGCCCGCACGCCCGTTTCATGGGTTGGCTTAG
127 TGCCTGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * *
12234589 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCA-GACCGAGGGTTGTGGAAAC-GAGATCGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACAGGACCGAGGGTTGCGGCAGCAG-GATGGA
* ** * * * * * *
12234652 CAGCACGTAGAGGGGGACCAGGTCGATCCCCAGCTTGCGCATTATGCCTTTTCGATCGGCTCAGC
64 CAGCACGCAG-GGGGGACCAGGTCGATCCCTGGCTTACGCATTCTGCCTCTTCGATCGACTGAGT
* * * **
12234717 G-ATCGAACCCTCGTTTCGTGGGTTAACTTAG
128 GCCT-GCACGCTCGTTTCGTGGGTTGGCTTAG
*
12234748 GCATACGGAGTTTATTCTCAT-TCTAAGATCAGACAGGACCGAGGGTTGCGGCAGCAGGATGGAC
1 GCATACGGAGTTCATTC-CATGTCTAAGATCAGACAGGACCGAGGGTTGCGGCAGCAGGATGGAC
* * * *
12234812 AGCACGCAGGGGGGATCAGGCCGGTCCCTGGCTTACGCATTCTACCTCTTCGATCGACTGAGTGC
65 AGCACGCAGGGGGGACCAGGTCGATCCCTGGCTTACGCATTCTGCCTCTTCGATCGACTGAGTGC
* *
12234877 CTGCACGTTCGTTTCGTGAGTTGGCTTAG
130 CTGCACGCTCGTTTCGTGGGTTGGCTTAG
12234906 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
12234933 CATACGGAGT
Statistics
Matches: 266, Mismatches: 65, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
157 8 0.03
158 136 0.51
159 116 0.44
160 6 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACAGGACCGAGGGTTGCGGCAGCAGGATGGACA
GCACGCAGGGGGGACCAGGTCGATCCCTGGCTTACGCATTCTGCCTCTTCGATCGACTGAGTGCC
TGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12234942 original size:26 final size:26
Alignment explanation
Indices: 12234906--12235010 Score: 194
Period size: 26 Copynumber: 4.0 Consensus size: 26
12234896 GTTGGCTTAG
12234906 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
12234932 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
12234958 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
12234984 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
12235010 G
1 G
12235011 ATCAGATCGG
Statistics
Matches: 78, Mismatches: 0, Indels: 2
0.98 0.00 0.03
Matches are distributed among these distances:
26 75 0.96
27 3 0.04
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:12235185 original size:26 final size:26
Alignment explanation
Indices: 12235155--12235206 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
12235145 TTGACTTAGA
12235155 CATATGGAGTTCATCCCCAGTCTAAG
1 CATATGGAGTTCATCCCCAGTCTAAG
*
12235181 CATATGGAGTTCATTCCCAGTCTAAG
1 CATATGGAGTTCATCCCCAGTCTAAG
12235207 ATCTAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATATGGAGTTCATCCCCAGTCTAAG
Found at i:12235696 original size:158 final size:158
Alignment explanation
Indices: 12235214--12237233 Score: 974
Period size: 159 Copynumber: 12.5 Consensus size: 158
12235204 AAGATCTAAC
* * * * * * * * * * * *
12235214 CGGATCGAGGGTTATGGCAGCAAGATCGATAACACGTAAGGGGGACCAGTCTGATCCCCGGCTTG
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTG
* * * * *
12235279 CGCATTCTACCTCTAC-AGTCGGCTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATA
66 CGCATTCTGCCTCTCCGA-TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
* *
12235343 GGGAGTTCATTCCATGTCTAAGCCCCAAT
130 CGGAGTTCATTCCATGTCTAAGCCCCAGT
* * * * * * * *
12235372 CGGATCGAGGGTTGTGGCAGCAGGTTCGACAGCATGCAGAGGGGGATTGGGCTGATCTCTGGCTT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGATCGGGCCGATCCCCGACTT
* ** * * * * * **
12235437 ACATATTATGCCTCTCCGA-CTGGCTCAGTGCCTGTACGCTCGTTTCGTGGGTTGAATTAGGCAT
65 GCGCATTCTGCCTCTCCGATC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
* * **** *
12235501 ACAGAGTTCATTCCCA-ATCTAAG-ATTGGA
129 ACGGAGTTCATT-CCATGTCTAAGCCCCAGT
* * * * * * *
12235530 CTGAACTGAGGGTTGCGACAGCAGGATCGACAGCACACAGGGGGGACCAGGCC-AGTCCCCGACT
1 C-GGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGA-TCCCCGACT
* * * * *
12235594 TGTGCATTCTGCCTCTTCGATCGGCTGAGCACCCGCACGCTCGTTACATGGGTTGGCTTAGGCAT
64 TGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
12235659 ACGGAGTTCATTCCATGTCTAAGCCCCAGT
129 ACGGAGTTCATTCCATGTCTAAGCCCCAGT
* * * * * * ** * *
12235689 CGGACTGAAGGTTGTGGCAGCAAGATCGGCAGCACACAGAGGGGAAT-GGGTTGATCCTCAACTT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGATCGGGCCGATCCCCGACTT
*
12235753 GCGCATTATGCCTCTCCGACCGGCCTCTCCGATCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGT
65 GCGC---AT---TCT-------GCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * **
12235818 TGACTTAGGCATATGGAGTTCATCCCCA-GTCTAAGCATTCAGAGTT
117 TGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGC---CCCAG-T
*** * ** * * * * *** * *
12235864 CATTCCCAGTCTAAGATCAGACTAGATCGAGGTTGCGATAGCAGGATCGACAGCACGCA--GGGG
1 CGGACCGAGGGT-TG-T--GGC-AG--C-AGGAT-CG--A-CAGCA-CG-CAGGGGGGATCGGGC
* * ** * * ** * *
12235927 GGATCAAGCCGA-TCCCCGACA-TGTGCATTCTACCTCTCCGGCGGGTTGAGCGCCCACACGCCC
52 CGATC--CCCGACT-TGCG-CATTCTGC-CTCT-CCGAT-CGGC----TGAGCGCCCGCACGCTC
** * **
12235990 GTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAAC
106 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGT
* * * * * * * *
12236043 CGGACCGAGGGTTGTGGCAACGGGACCGGCAGCACGCAGAGGGGGACCGGGCCTATCCTCGACCT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGATCGGGCCGATCCCCGACTT
* * * * * ** * *
12236108 ACACATTCTACCTTTTCGATCAACCTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCAT
65 GCGCATTCTGCCTCTCCGATC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
* *
12236173 ACAGAGTTCATTCCATGTGTAAG---CA-T
129 ACGGAGTTCATTCCATGTCTAAGCCCCAGT
* ** ** * * * * *
12236199 ---ACAGAGTTCATTCCCGGTAGCAGGATC-AGCAGCATGCAGAGGGGATCGAGCCGATCCTCGA
1 CGGACCGAG--GGTT-GTGGCAGCAGGATCGA-CAGCACGCAGGGGGGATCGGGCCGATCCCCGA
* * ** *
12236260 CTTGCGCATT-TGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCGTTTGTTAGCTTAGGC
62 CTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
*
12236324 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
127 ATACGGAGTTCATTCCATGTCTAAGCCCCAGT
* * * * * * * * *
12236356 CGAACCAAGGGTTGTGGTAACGGGACCGGCAGCACGCAGAGGAGGATCGGGCCAATCCCC-AGCT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGATCGGGCCGATCCCCGA-CT
* * *
12236420 TGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
64 TGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
* *
12236485 A-GTGAGTTCATTCCATATCTAAGCCCCAAT
129 ACG-GAGTTCATTCCATGTCTAAGCCCCAGT
* * * *
12236515 CAGACCAAGGGTTGTGGCAGC-GAGACCGACAGCACGCAGAGGGGGATCGGGCCGAT-CTCGAGG
1 CGGACCGAGGGTTGTGGCAGCAG-GATCGACAGCACGCAG-GGGGGATCGGGCCGATCCCCGA--
* * ** * * * *
12236578 CTTGCGCATTATGCCTCTTCGGCCGACTCAGCGCCCGCACGCTCGTTTCGTGGCTTGACTTAGGC
62 CTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
** *
12236643 ATACGGAGTTCATTCCCA-GTCTAAG-ATCAGAC
127 ATACGGAGTTCATT-CCATGTCTAAGCCCCAG-T
* ** * * * * *
12236675 CGAACTAAGGGTTATGGCAGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTA
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTG
* * * * **
12236740 CGCATTCTACCTCTCCTATCGGTTGAGCGCCCGCACGCTCGTTTCGTGGTTTACCTTAGGCATAC
66 CGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
12236805 GGAGTTCATTCCATGTCTAAGCCCCAGT
131 GGAGTTCATTCCATGTCTAAGCCCCAGT
* * * * * **
12236833 CAGACCGAGGATTGTGGTAGTAGGACCGACAGCGGGATCGATAGCACGCAGAAGGGGATCAGGTT
1 CGGACCGAGG---GT--T-GT--G---G-CAGCAGGATCGACAGCACGCAG-GGGGGATCGGGCC
* * * * * * * * *
12236898 GATCCTCGGCTTGTGCATTATGCCTCTCCGGTCGGTTGAGCACCCGCAGGCTCGTTTCTTGGGTT
53 GATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
** * * ** *
12236963 GAATTAGGCATACGGCGTTCATTCCCA-ATCTAAG-ATCGGAT
118 GGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-T
* ** * * *
12237004 TGGACCGAGGGTTGT--------G---G-CAGCACGCA-GGGGGCCCGAGCCGATCCCCGGCTTA
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTG
* * * * * * * *
12237056 CGCATTTTGCCTCTCC-AGCTGGCTGAGCACCCGCACGCCCATTTTGTGGGTAGACTTAGGCATA
66 CGCATTCTGCCTCTCCGATC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
*
12237120 GGGAGTTCATTCCATGTCTAAGCCCCAGT
130 CGGAGTTCATTCCATGTCTAAGCCCCAGT
* * * ** * *
12237149 CGGACTGAGGGTTGTGGCAGCTGGACCGGTAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGATCGGGCCGATCCCCGACTT
*
12237214 GCGCATTATGCCTCTCCGAT
65 GCGCATTCTGCCTCTCCGAT
12237234 TTGCCACAAA
Statistics
Matches: 1385, Mismatches: 357, Indels: 238
0.70 0.18 0.12
Matches are distributed among these distances:
144 4 0.00
145 96 0.07
146 2 0.00
147 8 0.01
148 1 0.00
151 1 0.00
153 63 0.05
154 9 0.01
155 27 0.02
156 20 0.01
157 37 0.03
158 268 0.19
159 303 0.22
160 172 0.12
161 9 0.01
163 2 0.00
164 7 0.01
165 9 0.01
166 13 0.01
167 4 0.00
168 8 0.01
169 1 0.00
170 23 0.02
171 165 0.12
172 7 0.01
174 4 0.00
175 7 0.01
176 3 0.00
177 5 0.00
178 4 0.00
179 12 0.01
180 4 0.00
182 4 0.00
183 57 0.04
184 2 0.00
187 12 0.01
188 4 0.00
189 7 0.01
190 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTG
CGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
GGAGTTCATTCCATGTCTAAGCCCCAGT
Found at i:12237507 original size:26 final size:26
Alignment explanation
Indices: 12237471--12237523 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12237461 GTTGACTTAG
*
12237471 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
12237497 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12237523 G
1 G
12237524 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12238409 original size:26 final size:26
Alignment explanation
Indices: 12238379--12238431 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12238369 GTTGGCTTAG
*
12238379 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACCGAGTTCATCCCCAGTCTAA
* *
12238405 GCATACCGAGTTCATTCCCAGTTTAA
1 GCATACCGAGTTCATCCCCAGTCTAA
12238431 G
1 G
12238432 ATCGAACAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATCCCCAGTCTAA
Found at i:12238755 original size:158 final size:159
Alignment explanation
Indices: 12238467--12238893 Score: 438
Period size: 158 Copynumber: 2.7 Consensus size: 159
12238457 AGCACGTAGT
* * * *
12238467 GGGATCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTAAGCGCCCACACACCCG
1 GGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGAC-GGCTAAGCGCCCACACGCTCG
* * * *
12238532 TTTCATGGGTTGGCTTAGGCAT-TGGAAGTTCATT-CCATGTCTAAGCCCTAGGCGGACCGGGGG
65 TTTCATGGGTTGACTTAGGCATACGG-AGTTCATTCCCATGTCTAAGACCTAGGCGGACCGAGGG
* * *
12238595 TTGTGGCAGC-GGA-TCGACAGCATGCAGAGG
129 TTGCGACAGCAGGATTCGA-AGCACGCAGAGG
* * * * *
12238625 GGGATCGGGCCGATCCCCGGCTTGCGCA-TCATGCCTCTTCGATCGACTCAGCGCCCTCACGCTC
1 GGGATCGGGCCGATCCCCGACTTGCGCATTC-TGCCTCTCCGA-CGGCTAAGCGCCCACACGCTC
* * * *
12238689 GTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATC-AGATCGGATCGAGG
64 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCTAG-GCGGACCGAGG
* * *
12238752 GTTGCGACAGCAGGATTGGAAGCACGCTGGGG
128 GTTGCGACAGCAGGATTCGAAGCACGCAGAGG
* * * * * * * *
12238784 GGGATCGGGTCAATCCCCGACTTGCGCATTCTACCTCTCCGACCGGTTGAGCGCCCGCATGCTCA
1 GGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGA-CGGCTAAGCGCCCACACGCTCG
* *
12238849 TTTCATGGGTTGCCTTAGGCATACGGAGTTCATT-CCATGACTAAG
65 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCATGTCTAAG
12238894 CCTCTATCGG
Statistics
Matches: 222, Mismatches: 38, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
157 4 0.02
158 108 0.49
159 105 0.47
160 5 0.02
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (159 bp):
GGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACGGCTAAGCGCCCACACGCTCGT
TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCTAGGCGGACCGAGGGTT
GCGACAGCAGGATTCGAAGCACGCAGAGG
Found at i:12238859 original size:159 final size:159
Alignment explanation
Indices: 12238479--12238946 Score: 439
Period size: 159 Copynumber: 2.9 Consensus size: 159
12238469 GATCGAGCTG
* * *
12238479 ATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTAAGCGCCCACACACCCGTTTCATGGGTTG
1 ATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTAAGCGCCCACACGCTCGTTTCATGGGTTG
* * * * * *
12238544 GCTTAGGCAT-TGGAAGTTCATT-CCATGTCTAAGCCCTAGGCGGACCGGGGGTTGTGGCAGCGG
66 ACTTAGGCATACGG-AGTTCATTCCCATGTCTAAGACCTAGGCGGACCGAGGGTTGCGACAGCGG
* *
12238607 ATCGACAGCATGCAGAGGGGGATCGGGCCG
130 ATCGACAGCACGCAGAGGGGGATCGGGCCA
* * * * * *
12238637 ATCCCCGGCTTGCGCA-TCATGCCTCTTCGATCGACTCAGCGCCCTCACGCTCGTTTCATGGGTT
1 ATCCCCGACTTGCGCATTC-TGCCTCTCCGACCGGCTAAGCGCCCACACGCTCGTTTCATGGGTT
* * * *
12238701 GACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATC-AGATCGGATCGAGGGTTGCGACAGCA
65 GACTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCTAG-GCGGACCGAGGGTTGCGACAGC-
* * * *
12238764 GGATTGGA-AGCACGCTGGGGGGGATCGGGTCA
128 GGA-TCGACAGCACGCAGAGGGGGATCGGGCCA
* * * * * *
12238796 ATCCCCGACTTGCGCATTCTACCTCTCCGACCGGTTGAGCGCCCGCATGCTCATTTCATGGGTTG
1 ATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTAAGCGCCCACACGCTCGTTTCATGGGTTG
* * * * * ** * *
12238861 CCTTAGGCATACGGAGTTCATT-CCATGACTAAGCCTCTA-TCGGACTGAGGGTTATGGCAGCAA
66 ACTTAGGCATACGGAGTTCATTCCCATGTCTAAGAC-CTAGGCGGACCGAGGGTTGCGACAGC-G
* *
12238924 GACCGGCAGCACGCAGAGGGGGA
129 GATCGACAGCACGCAGAGGGGGA
12238947 CTGGGCTAAC
Statistics
Matches: 248, Mismatches: 51, Indels: 21
0.77 0.16 0.07
Matches are distributed among these distances:
157 4 0.02
158 99 0.40
159 138 0.56
160 6 0.02
161 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (159 bp):
ATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTAAGCGCCCACACGCTCGTTTCATGGGTTG
ACTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCTAGGCGGACCGAGGGTTGCGACAGCGGA
TCGACAGCACGCAGAGGGGGATCGGGCCA
Found at i:12238981 original size:159 final size:158
Alignment explanation
Indices: 12238467--12238989 Score: 425
Period size: 159 Copynumber: 3.3 Consensus size: 158
12238457 AGCACGTAGT
* * * * * * * * * * * *
12238467 GGGATCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTAAGCGCCCACACACCCG
1 GGGATCGGGCT-AACCCCGGCTTGCGCATTATGACTCTCCGACCGACTCAGCGCCCGCACGCTCA
* * * * *
12238532 TTTCATGGGTTGGCTTAGGCAT-TGGAAGTTCATTCCATGTCTAAGCC-CTAGGCGGACCGGGGG
65 TTTCATGGGTTGACTTAGGCATACGG-AGTTCATTCCATGTCTAAGCCTCTA-TCGGACTGAGGG
* *
12238595 TTGTGGCAGC-GGATCGACAGCATGCAGAGG
128 TTGTGGCAGCAGGATCGGCAGCACGCAGAGG
* * * * * * * *
12238625 GGGATCGGGCCGATCCCCGGCTTGCGCATCATGCCTCTTCGATCGACTCAGCGCCCTCACGCTCG
1 GGGATCGGG-CTAACCCCGGCTTGCGCATTATGACTCTCCGACCGACTCAGCGCCCGCACGCTCA
* * *
12238690 TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGA-TCGAGG
65 TTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCTC-TATCGGACT-GAGG
* * * * * *
12238752 GTTGCGACAGCAGGATTGGAAGCACGCTGGGG
127 GTTGTGGCAGCAGGATCGGCAGCACGCAGAGG
* * ** * *
12238784 GGGATCGGG-TCAATCCCCGACTTGCGCATTCT-ACCTCTCCGACCGGTTGAGCGCCCGCATGCT
1 GGGATCGGGCT-AA-CCCCGGCTTGCGCATTATGA-CTCTCCGACCGACTCAGCGCCCGCACGCT
* *
12238847 CATTTCATGGGTTGCCTTAGGCATACGGAGTTCATTCCATGACTAAGCCTCTATCGGACTGAGGG
63 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCTATCGGACTGAGGG
* * *
12238912 TTATGGCAGCAAGACCGGCAGCACGCAGAGG
128 TTGTGGCAGCAGGATCGGCAGCACGCAGAGG
* * *
12238943 GGGA-CTGGGCTAACCCCTGGCTTACGTATTATGACTCTCCGGCCGAC
1 GGGATC-GGGCTAACCCC-GGCTTGCGCATTATGACTCTCCGACCGAC
12238990 CCCTCTGGCT
Statistics
Matches: 284, Mismatches: 64, Indels: 33
0.75 0.17 0.09
Matches are distributed among these distances:
158 112 0.39
159 167 0.59
160 5 0.02
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.23
Consensus pattern (158 bp):
GGGATCGGGCTAACCCCGGCTTGCGCATTATGACTCTCCGACCGACTCAGCGCCCGCACGCTCAT
TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCTATCGGACTGAGGGTTG
TGGCAGCAGGATCGGCAGCACGCAGAGG
Found at i:12239448 original size:159 final size:157
Alignment explanation
Indices: 12239065--12239451 Score: 377
Period size: 159 Copynumber: 2.5 Consensus size: 157
12239055 CCAAATCTAA
** * * * * **
12239065 GCATACGGAGTTCATTCATAGTCTAAGATCGGATCGGATCGAGGGTCGTGGCTGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCACTAGGATCGACA
* *
12239130 GCACGCAGGGAGACTGGGCCGATCACTGGCTTACGCATTCTGCCTCTCCGACCGACAGAGCGCCT
66 GCACGCAGGGAGACCGGGCCGATCACTGGCTTACGCATTATGCCTCTCCGACCGACAGAGCGCCT
* * *
12239195 GTACACCCGTTTCGTCGGTTGGCTTAG
131 GTACACCCATTTCATCGGTTGACTTAG
* * ** * * * *
12239222 GCATAGGGAGTTCATT-CCATGTCTATGCCCCAG-TCAGGCCGAGGGTTGTGGTAGC-ACGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAGACCGAGGGTTGTGGCA-CTAGGATCG
* * * * * **
12239284 GCAGCACGCAGAAGGGGACCGGGCCGATC-CATGGCTTACGCATTATGCCTCTTCGATCGGCTTA
63 ACAGCACGCAG--GGAGACCGGGCCGATCAC-TGGCTTACGCATTATGCCTCTCCGACCGACAGA
* * * *
12239348 GCGTCTGTACGCTCATTTCATGGGTTGACTTAG
125 GCGCCTGTACACCCATTTCATCGGTTGACTTAG
* **
12239381 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCACTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCACTAGGATCGACA
12239446 GCACGC
66 GCACGC
12239452 TGGAGGGATC
Statistics
Matches: 177, Mismatches: 44, Indels: 16
0.75 0.19 0.07
Matches are distributed among these distances:
156 1 0.01
157 50 0.28
158 7 0.04
159 116 0.66
160 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCACTAGGATCGACA
GCACGCAGGGAGACCGGGCCGATCACTGGCTTACGCATTATGCCTCTCCGACCGACAGAGCGCCT
GTACACCCATTTCATCGGTTGACTTAG
Found at i:12239936 original size:26 final size:26
Alignment explanation
Indices: 12239907--12239959 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12239897 GTTGACTTAG
12239907 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
12239933 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12239959 G
1 G
12239960 ATCGGACAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12240304 original size:159 final size:157
Alignment explanation
Indices: 12239933--12240422 Score: 465
Period size: 158 Copynumber: 3.1 Consensus size: 157
12239923 CCCAGTCTAA
* *
12239933 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACAGGACCGAGGGTTGCGAG-AGCAGGATCGAC
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGACCGAGGGTTGC-AGCAGCAGGATCGAC
* * * * *
12239997 AGCACGTA-AGGGGGATCGAGCCGATCCACGGCTTATGGATTCTGCCTCTCCGGTCGGCTGAGC-
64 AGCACGCAGAGGGGGATCGAGCTGATCC-CTGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCG
* * *
12240060 ACCTACAC-GTCCATTTCGTGGGTTGGCTTAG
128 CCCGA-ACGGT-CATTTCATGGGTTGGCTTAG
* * * * **
12240091 GCATA-GGTAGTTCATTCCATGTCTAA-ACCCTAG-TCGGACCAAGGGTCGTGGCAGCAGGATCG
1 GCATACGG-AGTTCATTCCA-GTCTAAGA-TC-AGACCGGACCGAGGGTTGCAGCAGCAGGATCG
* * * * * * *
12240153 GCAGCATGCAGAAGGGGATCGGGCTGATCCCTAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAG
62 ACAGCACGCAGAGGGGGATCGAGCTGATCCCT-GCTTACGCATTCTGCCTCTCCGGTCGGCTGAG
*
12240218 CGCCCGAACGGTCAATTCATGGGTTGGCTTAG
126 CGCCCGAACGGTCATTTCATGGGTTGGCTTAG
* * *
12240250 GCATACGAAGTTCATTGCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAAGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACA
* * * * * * * *
12240315 GCACACAG-GGGGGATCCAGCTGGTCCCTGACTTACGCATTCTACCGCTCCGATCAGCTGAACGC
65 GCACGCAGAGGGGGATCGAGCTGATCCCTG-CTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* * * *
12240379 CCGCACGCTCGTTTCATGGGTTGACTTAG
129 CCGAACGGTCATTTCATGGGTTGGCTTAG
12240408 GCATACGGAGTTCAT
1 GCATACGGAGTTCAT
12240423 CCCCAATCTA
Statistics
Matches: 264, Mismatches: 54, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
157 6 0.02
158 133 0.50
159 115 0.44
160 10 0.04
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAG
CACGCAGAGGGGGATCGAGCTGATCCCTGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
GAACGGTCATTTCATGGGTTGGCTTAG
Found at i:12240438 original size:869 final size:855
Alignment explanation
Indices: 12239021--12240638 Score: 2000
Period size: 869 Copynumber: 1.9 Consensus size: 855
12239011 CGAACGCACG
* * *
12239021 TTTCATGGGTTGACTTAGGTATGCGGAGTTCATCCCAAATCTAAGCATACGGAGTTCATTCATAG
1 TTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCAAATCTAAGCATACGGAGTTCATTCATAG
* * * * * *
12239086 TCTAAGATCGGATCGGATCGAGGGTCGTGGCTGTAGGATCGACAGCACGCAGGGAGACTGGGCCG
66 TCTAAGATCGGATCGGACCGAGGGTCGCGGCAGCAGGATCGACAGCACGAAGGGAGACTGAGCCG
* *
12239151 ATCACTGGCTTACGCATTCTGCCTCTCCGACCGACAGAGCGCCTGTACACCCGTTTCGTCGGTTG
131 ATCACTGGCTTACGCATTCTGCCTCTCCGACCGACAGAGCACC-GTACACCCATTTCGTCGGTTG
** * * *
12239216 GCTTAGGCATAGGGAGTTCATTCCATGTCTATGCCCCAGTCAGGCCGAGGGTTGTGGTAGCACGA
195 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGTCAGGCCAAGGGTCGTGGCAGCACGA
* *
12239281 CCGGCAGCACGCAGAAGGGGACCGGGCCGATCCATGGCTTACGCATTATGCCTCTTCGATCGGCT
260 CCGGCAGCACGCAGAAGGGGACCGGGCCGATCCATAGCTTACGCATTATGCCTCTCCGATCGGCT
* * * * * *
12239346 TAGCGTCTGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
325 CAGCGCCCGAACGCTCAATTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATC
* * * * *
12239411 AGACCAGACCGAGGGTTACGGCACTAGGATCGACAGCACGCTGGAGGGATCACACCGGTCCCCGG
390 AGACCAGACCGAGGGTTACAGCACTAAGATCGACAGCACACAGGAGGGATCACACCGGTCCCCGA
** * * * * *
12239476 CTTGTGCATTCTGCCACTCCGATCGGTTGAACGCCTGCACACTCGTTTCAAGGGTTAGCTTAGTC
455 CTTACGCATTCTACCACTCCGATCAGCTGAACGCCCGCACACTCGTTTCAAGGGTTAGCTTAGGC
* * * ** * **
12239541 ATACGAAGTTCGTTCCATGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATTGGACCAGACCG
520 ATACGAAGTTCATCCCATATCTAAGCATACAGAGTTCATTCCCAACCTAAGATCAGACCAGACCG
* * *
12239606 AAGGTTACGGTAGCAGGACCAGTAGCAGGATCGATAGCACGCAGTAGGGATCGAG-TTGATCCCC
585 -A-G----GGTAGCA-G--C---AGCAGGATCGATAGCACACAGGAGGGATCGAGCCT-ATCCCC
* *
12239670 AGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCATCGGTACG-CTCGTTTCGTGGGTTGGCTTA
637 AGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCATCGGCACGAC-CGTTTCGTGGGTTGGCTTA
* *
12239734 GGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGTAGCAGGATCGGC
701 GGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAGGATCGGC
12239799 AGCACACAGAGGGAGACCAGGCTGATCCCCGACTTGCGTATTATGCCTCTCTGACTGGCCTTTTC
766 AGCACACAGAGGGAGACCAGGCTGATCCCCGACTTGCGTATTATGCCTCTCTGACTGGCCTTTTC
12239864 GGCCGACTGAATGCCCGCATGCTCA
831 GGCCGACTGAATGCCCGCATGCTCA
* * * *
12239889 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAG
1 TTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCAAATCTAAGCATACGGAGTTCATTCATAG
* *
12239954 TCTAAGATCGGA-CAGGACCGAGGGTTGCGAG-AGCAGGATCGACAGCACGTAAGGGGGA-TCGA
66 TCTAAGATCGGATC-GGACCGAGGGTCGCG-GCAGCAGGATCGACAGCACG-AAGGGAGACT-GA
* * ** * *
12240016 GCCGATCCAC-GGCTTATGGATTCTGCCTCTCCGGTCGGCTGAGCACC-TACACGTCCATTTCGT
127 GCCGAT-CACTGGCTTACGCATTCTGCCTCTCCGACCGACAGAGCACCGTACAC--CCATTTCGT
* * *
12240079 GGGTTGGCTTAGGCATAGGTAGTTCATTCCATGTCTAAACCCTAGTC-GGACCAAGGGTCGTGGC
189 CGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGTCAGG-CCAAGGGTCGTGGC
* * * * * * *
12240143 AGCAGGATCGGCAGCATGCAGAAGGGGATCGGGCTGATCCCTAGCTTGCGCATTATGCCTCTCCG
253 AGCACGACCGGCAGCACGCAGAAGGGGACCGGGCCGATCCATAGCTTACGCATTATGCCTCTCCG
* * * *
12240208 GTCGGCTCAGCGCCCGAACGGTCAATTCATGGGTTGGCTTAGGCATACGAAGTTCATTGCCAGTC
318 ATCGGCTCAGCGCCCGAACGCTCAATTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTC
* * * * *
12240273 TAAGATCAGACCGGACTGAGGGTTGCAGCAGC-AAGATCGACAGCACACAGGGGGGATC-CAGCT
383 TAAGATCAGACCAGACCGAGGGTTACAGCA-CTAAGATCGACAGCACACAGGAGGGATCACA-CC
* * * *
12240336 GGTCCCTGACTTACGCATTCTACCGCTCCGATCAGCTGAACGCCCGCACGCTCGTTTCATGGGTT
446 GGTCCCCGACTTACGCATTCTACCACTCCGATCAGCTGAACGCCCGCACACTCGTTTCAAGGGTT
* *
12240401 -GACTTAGGCATACGGAGTTCATCCCCA-ATCTAAGCATACAGAGTTCATTCCCAGCCTAAGATC
511 AG-CTTAGGCATACGAAGTTCAT-CCCATATCTAAGCATACAGAGTTCATTCCCAACCTAAGATC
* * * * * * * *
12240464 AGATCGGACCGAGGGTTGCAGCAGCAGGATCGGTAGCTCACAGGGGGGATCGGGCCTATCCCCGG
574 AGACCAGACCGAGGGTAGCAGCAGCAGGATCGATAGCACACAGGAGGGATCGAGCCTATCCCCAG
** * **
12240529 CTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGTTTGCACGACCGTTTCGTGGGTTGGCTTAGGC
639 CTTGCGCATTCTGCCTCTCCGGCCGACTGAGCATCGGCACGACCGTTTCGTGGGTTGGCTTAGGC
12240594 ATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
704 ATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
12240639 ATGGCAGTGG
Statistics
Matches: 635, Mismatches: 101, Indels: 39
0.82 0.13 0.05
Matches are distributed among these distances:
857 132 0.21
858 2 0.00
860 1 0.00
862 1 0.00
863 6 0.01
867 7 0.01
868 105 0.17
869 374 0.59
870 7 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (855 bp):
TTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCAAATCTAAGCATACGGAGTTCATTCATAG
TCTAAGATCGGATCGGACCGAGGGTCGCGGCAGCAGGATCGACAGCACGAAGGGAGACTGAGCCG
ATCACTGGCTTACGCATTCTGCCTCTCCGACCGACAGAGCACCGTACACCCATTTCGTCGGTTGG
CTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGTCAGGCCAAGGGTCGTGGCAGCACGAC
CGGCAGCACGCAGAAGGGGACCGGGCCGATCCATAGCTTACGCATTATGCCTCTCCGATCGGCTC
AGCGCCCGAACGCTCAATTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCA
GACCAGACCGAGGGTTACAGCACTAAGATCGACAGCACACAGGAGGGATCACACCGGTCCCCGAC
TTACGCATTCTACCACTCCGATCAGCTGAACGCCCGCACACTCGTTTCAAGGGTTAGCTTAGGCA
TACGAAGTTCATCCCATATCTAAGCATACAGAGTTCATTCCCAACCTAAGATCAGACCAGACCGA
GGGTAGCAGCAGCAGGATCGATAGCACACAGGAGGGATCGAGCCTATCCCCAGCTTGCGCATTCT
GCCTCTCCGGCCGACTGAGCATCGGCACGACCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCA
TTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAGGATCGGCAGCACACAGAGGGAG
ACCAGGCTGATCCCCGACTTGCGTATTATGCCTCTCTGACTGGCCTTTTCGGCCGACTGAATGCC
CGCATGCTCA
Found at i:12240459 original size:26 final size:26
Alignment explanation
Indices: 12240408--12240460 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12240398 GTTGACTTAG
* *
12240408 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAACCTAA
* *
12240434 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATCCCCAACCTAA
12240460 G
1 G
12240461 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAACCTAA
Done.