Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 81 of 402
Found at i:12240608 original size:501 final size:500
Alignment explanation
Indices: 12239870--12241132 Score: 1351
Period size: 501 Copynumber: 2.5 Consensus size: 500
12239860 TTTCGGCCGA
* * *
12239870 CTGAATGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
1 CTGAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * **
12239935 ATACGGAGTTCATTCCTAGTCTAAGATCGGA-CAGGACCGAGGGTTGCGAG-AGCAGGATCGACA
66 ATACAGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGC-AGCAGCAGGATCGGTA
* * * * * * **
12239998 GCACGTAA-GGGGGATCGAGCCGATCCACGGCTTATGGATTCTGCCTCTCCGGTCGGCTGAGCAC
129 GCTC--AAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGT
* * * *
12240062 CTACACGTCCATTTCGTGGGTTGGCTTAGGCAT-AGGTAGTTCATTCCATGTCTAAACCCTAGTC
192 CTGCACG-CCGTTTCGTGGGTTGGCTTAGGCATAAGG-AGTTCATTCCATGTCTAAACCCCAGCC
* * * *
12240126 GGACCAAGGGTCGTGGCAGCAGGA-TCGGCAGCATGCAGAAGGGGATCGGGCTGATCCCTAGCTT
255 GGACCAAGGGTCATGGCAGCAGGACT-GACAGCACGCAGAAGGGGACCGGGCTGATCCCTAGCTT
* * * *
12240190 GCGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGAACGGTCAATT-CATGGGTTGGCTTAGGCAT
319 GCACATTATGCCTCTCCGGTCGGCTCAACGCCCGAACGCTC-ATTCCATGGGTTGACTTAGGCAT
* * * *
12240254 ACGAAGTTCATTGCCAGTCTAAGATCAGACCGGACTGAGGGTTGC-AGCAGCAAGATCGACAGCA
383 ACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGA-CAGCAAGATCGACAGCA
* *
12240318 CACAGGGGGG-ATCCAGCTGGTCCCTGACTTACGCATTCTACCGCTCCGATCAG
447 CACAGGGGGGAATCCAGCAGGTCCCCGACTTACGCATTCTACCGCTCCGATCAG
* * *
12240371 CTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGC
1 CTGAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
*
12240436 ATACAGAGTTCATTCCCAGCCTAAGATCAGATCGGACCGAGGGTTGCAGCAGCAGGATCGGTAGC
66 ATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAGCAGCAGGATCGGTAGC
* * * *
12240501 TCACAGGGGGGATCGGGCCTATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGTTTG
131 TCA-AGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGTCTG
*
12240566 CACGACCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
195 CACG-CCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAACCCCAGCCGGAC
* * ** * * * *
12240631 CGAGGGTTATGGCAGTGGGACTGACAGCACGCAGAGGGGGACCGGGTTGATCCCTGGCTTGCACC
259 CAAGGGTCATGGCAGCAGGACTGACAGCACGCAGAAGGGGACCGGGCTGATCCCTAGCTTGCACA
* * * * * **
12240696 TTATGCCTTTTCGGTCGGCTCAACGCTCGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGGG
324 TTATGCCTCTCCGGTCGGCTCAACGCCCGAACGCTCATTCCATGGGTTGACTTAGGCATACGAAG
* * * *
12240761 TTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTGCGATAGCAGGATCGACAGCACATAGGG
389 TTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATCGACAGCACACAGGG
** * * * * * *
12240826 GGGAATCGGGCAGGTCCCCGATTTGCTCATTTTACCTCTCCGATCGG
454 GGGAATCCAGCAGGTCCCCGACTTACGCATTCTACCGCTCCGATCAG
** * * * * *
12240873 CTGAGGGCCCGTACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAA
1 CTGAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAG
* * * * *
12240937 CATACAGAGTTCCTTTCCAGTCTAACATCAGATTGGACCAAGGGTTACGACAACAGGACCAGCAA
65 CATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTT--G----CA-G--CAGC--
* * * * * * *
12241002 TAGGATCGGTAGCATGTAAGGGGGGAGCAGGCCGATCCCCAGCTTTCGCATTTTGCCTCTCCGAC
119 -AGGATCGGTAGC-T-CAAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGC
* * * *
12241067 TGGCTGAACGTGC-GCATGCTCGTTTCCTGGGTTGGCTTAGGCATACA-GAGTTCATTCCATGTC
181 CGGCTGAGCGT-CTGCACGC-CGTTTCGTGGGTTGGCTTAGGCATA-AGGAGTTCATTCCATGTC
12241130 TAA
243 TAA
12241133 GCCCAACCGG
Statistics
Matches: 634, Mismatches: 101, Indels: 40
0.82 0.13 0.05
Matches are distributed among these distances:
499 1 0.00
500 5 0.01
501 380 0.60
502 129 0.20
504 1 0.00
508 2 0.00
509 1 0.00
511 4 0.01
514 13 0.02
515 96 0.15
516 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (500 bp):
CTGAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
ATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAGCAGCAGGATCGGTAGC
TCAAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGTCTGC
ACGCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAACCCCAGCCGGACCA
AGGGTCATGGCAGCAGGACTGACAGCACGCAGAAGGGGACCGGGCTGATCCCTAGCTTGCACATT
ATGCCTCTCCGGTCGGCTCAACGCCCGAACGCTCATTCCATGGGTTGACTTAGGCATACGAAGTT
CATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATCGACAGCACACAGGGGG
GAATCCAGCAGGTCCCCGACTTACGCATTCTACCGCTCCGATCAG
Found at i:12240619 original size:184 final size:184
Alignment explanation
Indices: 12240250--12240606 Score: 423
Period size: 184 Copynumber: 1.9 Consensus size: 184
12240240 GTTGGCTTAG
* * *
12240250 GCATACGAAGTTCATTGCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGCAAGATCGACA
1 GCATACGAAGTTCATTCCCAGCCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAAGATCGACA
* * *
12240315 GCACACAGGGGGGATCCAGCTGGTCCCTGACTTACGCATTCTACCGCTCCGATCAGCTGAACGCC
66 GCACACAGGGGGGATCCAGCTGATCCCCGACTTACGCATTCTACCGCTCCGACCAGCTGAACGCC
*
12240380 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAA
131 CGCACGCTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATCCCCAATCTAA
* * **
12240434 GCATAC-AGAGTTCATTCCCAGCCTAAGATCAGATCGGACCGAGGGTTGCAGCAGCAGGATCGGT
1 GCATACGA-AGTTCATTCCCAGCCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAAGATCGAC
* ** * * * * * * * *
12240498 AGCTCACAGGGGGGATCGGGCCT-ATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCG
65 AGCACACAGGGGGGATCCAG-CTGATCCCCGACTTACGCATTCTACCGCTCCGACCAGCTGAACG
*** * *
12240562 TTTGCACGAC-CGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCAT
129 CCCGCACG-CTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCAT
12240607 TCCATGTCTA
Statistics
Matches: 143, Mismatches: 27, Indels: 6
0.81 0.15 0.03
Matches are distributed among these distances:
183 1 0.01
184 139 0.97
185 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.22
Consensus pattern (184 bp):
GCATACGAAGTTCATTCCCAGCCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAAGATCGACA
GCACACAGGGGGGATCCAGCTGATCCCCGACTTACGCATTCTACCGCTCCGACCAGCTGAACGCC
CGCACGCTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATCCCCAATCTAA
Found at i:12240940 original size:26 final size:26
Alignment explanation
Indices: 12240911--12240968 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
12240901 TTGGCTTAGG
*
12240911 CATACGGAGTT-CATTCCATGTCTAAA
1 CATACAGAGTTCCATTCCA-GTCTAAA
*
12240937 CATACAGAGTTCCTTTCCAGTCT-AA
1 CATACAGAGTTCCATTCCAGTCTAAA
12240962 CAT-CAGA
1 CATACAGA
12240969 TTGGACCAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 4 0.14
25 5 0.17
26 14 0.48
27 6 0.21
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCCATTCCAGTCTAAA
Found at i:12241313 original size:26 final size:26
Alignment explanation
Indices: 12241277--12241329 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12241267 GTTGACTTAG
12241277 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
12241303 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12241329 G
1 G
12241330 ATTAGGCCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12241497 original size:26 final size:26
Alignment explanation
Indices: 12241461--12241513 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12241451 GTTGGCTTAG
12241461 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12241487 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12241513 G
1 G
12241514 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12242224 original size:26 final size:26
Alignment explanation
Indices: 12242194--12242246 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12242184 GTTGACTTAG
* *
12242194 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
*
12242220 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
12242246 G
1 G
12242247 ATCGTACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAATTCATCCCCAGTCTAA
Found at i:12242713 original size:158 final size:159
Alignment explanation
Indices: 12242316--12243222 Score: 423
Period size: 158 Copynumber: 5.4 Consensus size: 159
12242306 GATCCCCGGT
* * * * *
12242316 CGGCTGAGCGCCCACACACCCGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * ** *
12242381 AGCCCCAGCCAGACCGAAGGTTGTGGCAGGGGGATCGGCAGCACACAGAGGGGGATCGACTCGAT
66 AGCCCCAACCAGATCGAAGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGATCGACTCGAT
* * * **
12242446 CCCCTGCTTGTGCATTATGTCTCTTCGGT
131 CCCCTGCTTGCGCATTATGCCTCTCCGAC
* * * * * *
12242475 CGGCTTAGTGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCT
1 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCT
** * * * ** * **
12242539 AAG-ATCAGACCAGATCGAAGGTTGCGGCAGTAGGATCGATAGCACGTAG-GGGGGATTGGGTC-
65 AAGCCCCA-ACCAGATCGAAGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGATCGACTCG
** * *
12242601 AGT-TTCTGGCTTGCGCCTTCTGCCTCTCCGAC
129 A-TCCCCT-GCTTGCGCATTATGCCTCTCCGAC
*
12242633 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * * * *
12242698 AGCCCCAACCGGATCGATGGTTGTGGCAGCAGGACTGGCAGTGAGATCGGCAACATGCAAAGGGC
66 AGCCCCAACCAGATCGAAGGTTGTGGCAGCAGGA-T--C-----GA-CAGC-ACA--CAGAGGGG
* * * * * *
12242763 GATAGGGCT-GATCCTCGGCTTACGTATTATGCCTCTTCGGTCGACCTCTCC
119 GAT-CGACTCGATCCCCTGCTTGCGCATTATGCCTC-TC---CGA------C
* * * * * *
12242814 GATCGGTTGAGAGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAAT
1 ---CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCC-AT
* * *
12242879 GTAAGCATATGGAGTTCATTCCC-ACTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAAGAT
61 GT---C-TA---AG--C---CCCAAC-C--AGAT-----C-GA---A-GGTTGTGGCAGCAGGAT
* ** ** * * * *
12242943 TGACAGCACGTA-AGGGGGATCGGGTCGATCCCCAGCTTACGCATTCTACCTCTCCGAC
101 CGACAGCACACAGAGGGGGATCGACTCGATCCCCTGCTTGCGCATTATGCCTCTCCGAC
* * *
12243001 TGGCTGAGCACCCGCACGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
1 CGGCTGAGCGCCCGCACGCTC-GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* * * * * * * * ** **
12243065 AAGCCCCAGCCAGACCGAGGGCTGTGGCAACGGGACCGGCAGCAGGCAGAGGGGGATCGGGTCGA
65 AAGCCCCAACCAGATCGAAGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGATCGACTCGA
* * *
12243130 T-CCCTGACTTGTGCATTATG-CTCTCAGGC
130 TCCCCTG-CTTGCGCATTATGCCTCTCCGAC
* * * *
12243159 CAGCTGAGCACCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCT
1 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
12243223 GAGCATACGG
Statistics
Matches: 560, Mismatches: 120, Indels: 137
0.69 0.15 0.17
Matches are distributed among these distances:
157 6 0.01
158 195 0.35
159 114 0.20
160 3 0.01
161 1 0.00
162 2 0.00
163 1 0.00
166 2 0.00
167 2 0.00
168 5 0.01
170 5 0.01
171 22 0.04
172 8 0.01
173 1 0.00
175 5 0.01
178 2 0.00
179 1 0.00
181 1 0.00
182 4 0.01
183 3 0.01
184 94 0.17
185 2 0.00
186 4 0.01
187 1 0.00
189 1 0.00
190 2 0.00
193 5 0.01
195 1 0.00
196 5 0.01
197 30 0.05
198 5 0.01
200 5 0.01
201 3 0.01
202 2 0.00
205 1 0.00
206 2 0.00
209 1 0.00
210 13 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
AGCCCCAACCAGATCGAAGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGATCGACTCGAT
CCCCTGCTTGCGCATTATGCCTCTCCGAC
Found at i:12242909 original size:26 final size:26
Alignment explanation
Indices: 12242857--12242909 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12242847 GTTGACTTAG
*
12242857 GCATACGGAGTTCATCCCCAATGTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
12242883 GCATATGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
12242909 G
1 G
12242910 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:12243229 original size:26 final size:25
Alignment explanation
Indices: 12243199--12243277 Score: 86
Period size: 26 Copynumber: 3.0 Consensus size: 25
12243189 GTTGGCTTAG
* * *
12243199 GCATACAGAGTTCATTCCATGTCTGA
1 GCATACGGAGTTCATTCCA-ATCTAA
12243225 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATT-CCAATCTAA
* *
12243251 GCAAACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATT-CCAATCTAA
12243277 G
1 G
12243278 ATCGGATCGG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 44 0.94
27 3 0.06
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAATCTAA
Found at i:12243231 original size:368 final size:368
Alignment explanation
Indices: 12242857--12243585 Score: 1014
Period size: 368 Copynumber: 2.0 Consensus size: 368
12242847 GTTGACTTAG
* * *
12242857 GCATACGGAGTTCATCCCCAATGTAAGCATATGGAGTTCATTCCCACTCTAAGATCGGACCAGAC
1 GCATACGGAGTTCATCCCCAATCTAAGCAAACGGAGTTCATTCCCACTCTAAGATCGGACCAGAC
* * * * *
12242922 CGAGGGTTGCGACAGCAAGATTGACAGCACGTAAGGGGGATCGGGTCGATCCCCAGCTTACGCAT
66 CGAGGGTTACGACAGCAAGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCCAGCTTACGCAT
*
12242987 TCTACCTCTCCGA-CTGGCTGAGCACCCGCA-CGCCTGTTTCATGGGTTGGCTTAGGCATAGGGA
131 TCTACCTCTCCGATC-GGCTGAGCACCCACAGCGCCTG--TCATGGGTTGGCTTAGGCATAGGGA
*
12243050 GTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGCTGTGGCAACGGGACCGGCAGCAGGCAGA
193 GTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGCTGTGGCAACGGGACCGGCAGCACGCAGA
* * * * * *
12243115 GGGGGATCGGGTCGATCCCTGACTTGTGCATTATG-CTCTCAGGCCAGCTGAGCACCCGAACGCT
258 GGGGGACCAGGCCGATCCCTGACTTGCGCATTATGCCTCTCAGGCCAGCTCAACACCCGAACGCT
* **
12243179 CGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTGA
323 CATTTCATGGGTTAACTTAGGCATACAGAGTTCATTCCATGTCTGA
* * * *
12243225 GCATACGGAGTTCATTCCCAATCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
1 GCATACGGAGTTCATCCCCAATCTAAGCAAACGGAGTTCATTCCCACTCTAAGATCGGACCAGAC
** ** * *
12243290 CGAGGGTTACGGTAGCAAGATCGGTAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCAT
66 CGAGGGTTACGACAGCAAGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCCAGCTTACGCAT
* *
12243355 TCTACCTCTCCGATCGGCTGAGCACCCACATGCTCCTGTCGTGGGTTGGCTTAGGCATAGGGAGT
131 TCTACCTCTCCGATCGGCTGAGCACCCACA-GCGCCTGTCATGGGTTGGCTTAGGCATAGGGAGT
* ** *
12243420 TCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGCTGTGGTAACGGGATTGGCATCACGCAGAGG
195 TCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGCTGTGGCAACGGGACCGGCAGCACGCAGAGG
* * * * *
12243485 GGGACCAGGCCGATCCCTTACTTGCGCATTATGCCTCTCCGGCCGGCTCAACTCCCGCACGCTCA
260 GGGACCAGGCCGATCCCTGACTTGCGCATTATGCCTCTCAGGCCAGCTCAACACCCGAACGCTCA
* * *
12243550 TTTTATGGGTTAACTTAGGTATACGGAGTTCATTCC
325 TTTCATGGGTTAACTTAGGCATACAGAGTTCATTCC
12243586 CAGTCTAAGA
Statistics
Matches: 314, Mismatches: 43, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
368 253 0.81
369 56 0.18
370 5 0.02
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.22
Consensus pattern (368 bp):
GCATACGGAGTTCATCCCCAATCTAAGCAAACGGAGTTCATTCCCACTCTAAGATCGGACCAGAC
CGAGGGTTACGACAGCAAGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCCAGCTTACGCAT
TCTACCTCTCCGATCGGCTGAGCACCCACAGCGCCTGTCATGGGTTGGCTTAGGCATAGGGAGTT
CATTCCATGTCTAAGCCCCAGCCAGACCGAGGGCTGTGGCAACGGGACCGGCAGCACGCAGAGGG
GGACCAGGCCGATCCCTGACTTGCGCATTATGCCTCTCAGGCCAGCTCAACACCCGAACGCTCAT
TTCATGGGTTAACTTAGGCATACAGAGTTCATTCCATGTCTGA
Found at i:12243618 original size:159 final size:158
Alignment explanation
Indices: 12243255--12243753 Score: 376
Period size: 159 Copynumber: 3.1 Consensus size: 158
12243245 ATCTAAGCAA
* ** * *
12243255 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAGCAAGATCGGTAGCAC
1 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGTGGTAACAAGATCGGCAGCAC
* * * * *
12243320 GCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGATCGGCTGAGCACCCACA
66 GCAGGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATACCTCTCCGACCGGCTCAACACCCACA
* * * **
12243385 TGCTCCTGTCGTGGGTTGGCTTAGGCAT
131 CGCTCATGTCATGGGTTAACTTAGGCAT
* * ** * * * ** * *
12243413 AGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCAGACCGAGGGCTGTGGTAACGGGATTGGCATC
1 ACGGAGTTCATTCCCA-GTCTAAGATCGGATCGA-ACCGAGGGTTGTGGTAACAAGATCGGCAGC
* * * *
12243476 ACGCAGAGGGGGACCAGGCCGATCCCTTA-CTTGCGCATTATGCCTCTCCGGCCGGCTCAACTCC
64 ACGCAG-GGGGGACCAGGCCGATCCC-CAGCTTGCGCATTATACCTCTCCGACCGGCTCAACACC
* * * *
12243540 CGCACGCTCATTTTATGGGTTAACTTAGGTAT
127 CACACGCTCATGTCATGGGTTAACTTAGGCAT
* * * * * *
12243572 ACGGAGTTCATTCCCAGTCTAAGATTGGATCGAACTGAGGGTTGTGGCAGCAAGATCGACAGCAT
1 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGTGGTAACAAGATCGGCAGCAC
* * * ** ** * * * * * *** *
12243637 ACAGGTGGGGACCGGGCCAATCCCTGGCTTGCTTATTCTGCCTTTCCGACCGACTGAGTGCCCGC
66 GCAGG-GGGGACCAGGCCGATCCCCAGCTTGCGCATTATACCTCTCCGACCGGCTCAACACCCAC
* * **
12243702 ACGCTCATTTCATGGGCTGGCTTAGGCAT
130 ACGCTCATGTCATGGGTTAACTTAGGCAT
12243731 ACGGAGTTCATT-CCATGTCTAAG
1 ACGGAGTTCATTCCCA-GTCTAAG
12243754 CATACGAAGT
Statistics
Matches: 262, Mismatches: 70, Indels: 17
0.75 0.20 0.05
Matches are distributed among these distances:
157 6 0.02
158 50 0.19
159 199 0.76
160 7 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
ACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGTGGTAACAAGATCGGCAGCAC
GCAGGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATACCTCTCCGACCGGCTCAACACCCACA
CGCTCATGTCATGGGTTAACTTAGGCAT
Found at i:12243757 original size:26 final size:26
Alignment explanation
Indices: 12243727--12243779 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12243717 GCTGGCTTAG
*
12243727 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
12243753 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
12243779 G
1 G
12243780 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:12243959 original size:26 final size:26
Alignment explanation
Indices: 12243922--12243974 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12243912 GTTGACTTAG
12243922 GCATACGAAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
* *
12243948 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
12243974 G
1 G
12243975 ATTAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:12244427 original size:158 final size:157
Alignment explanation
Indices: 12243948--12244449 Score: 541
Period size: 158 Copynumber: 3.2 Consensus size: 157
12243938 CCTAGTCTAA
* * * *
12243948 GCATACGGAGTTCATTCCTAGTCTAAGATTAGACTAGATTGAGGGTTGCGGCAGTAGGATTGGCA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACTAGATTGAGGGTTGCGGCAGCAGGATCGACA
* * * *
12244013 GCACGCAGGAGGGA-TCGAGCCGATCCCTGACTTACGCATTCTGCCTCTCCGGCCGACTGAGCGC
65 GCACGCAGGGGGGACT-GGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
12244077 CCGCACGAC-CGTTTCGTGGGTTGGCTTAG
129 CCGCACG-CTCGTTTCGTGGGTTGGCTTAG
* * ** * * * *
12244106 GCATAGGGAGTTCATTGCATGTCTAAGCCCCAG-CTGGATTGAGGGTTGTGGTAGCGGGATC-AG
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACTAGATTGAGGGTTGCGGCAGCAGGATCGA-
* * * * * *
12244169 CAGCACGCAGAGGGGGACCGGGCCGAT-CCTAAGCTTGCGCATTATGCCTCTCCGACCGGCTCAA
63 CAGCACGCAG-GGGGGACTGGGCCGATCCCTGA-CTTGCGCATTCTGCCTCTCCGGCCGGCTGAG
* * * *
12244233 TGCCCACACGCTCGTTTCATGGGTTGACTTTA-
126 CGCCCGCACGCTCGTTTCGTGGGTTGGC-TTAG
**
12244265 GCATACGGAGTTCATTCACAGTCTAAGATCAGACT-GAACGAAGGGTTGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGACTAGATTG-AGGGTTGCGGCAGCAGGATCGAC
* * * *
12244329 AGCACGTAGGGGGGACTGGGCCGGTCCCTGACTTGTGCATTCTGCCTTTCCGGCCGGCTGAGCGC
64 AGCACGCAGGGGGGACTGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
*
12244394 CCGCACGCTCATTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
12244423 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
12244450 CATACGGAGT
Statistics
Matches: 278, Mismatches: 51, Indels: 30
0.77 0.14 0.08
Matches are distributed among these distances:
157 6 0.02
158 151 0.54
159 115 0.41
160 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACTAGATTGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAGGGGGGACTGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12244459 original size:26 final size:26
Alignment explanation
Indices: 12244423--12244475 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12244413 GTTGGCTTAG
*
12244423 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12244449 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12244475 G
1 G
12244476 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12245163 original size:26 final size:26
Alignment explanation
Indices: 12245134--12245186 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12245124 GTTAACTTAG
12245134 GCATAC-AGAGTTCATCCCCAATCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
* *
12245160 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
12245186 G
1 G
12245187 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:12252004 original size:158 final size:158
Alignment explanation
Indices: 12251532--12252026 Score: 511
Period size: 158 Copynumber: 3.1 Consensus size: 158
12251522 TAAGCATATA
* * * *
12251532 GAGTTCATTCCCA-GTCTAAGATCAGACTGGAGC-GAGGGTTACGGCAGTAGGATTGGTAGCACG
1 GAGTTCATT-CCATGTCTAAGATCAGAC-CGAACTGAGGGTTACGGCAGCAGGATCGGTAGCACG
** * * * *
12251595 CAAAGGGGATC-GGACCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCACCCGCA
64 CAGGGGGGATCAGG-CCGATCCCTGGCTTGTGCATTCTGCCTCTCCGACTGGCTGAGCACCCGCA
* * *
12251659 CACCCGTTTCGTGGGTTGGCTTAGGCATAGG
128 CGCTCGTTTCGTGGGTTGGCTTAGGCATACG
** * *
12251690 GAGTTCATTCCATGTCTAAGCCCCAG-CC-AGACTGAGGGTTATGGCAGC-GAGA-CTGGCAGCA
1 GAGTTCATTCCATGTCTAAG-ATCAGACCGA-ACTGAGGGTTACGGCAGCAG-GATC-GGTAGCA
* * * * * * * *
12251751 CGCAGAGGGGGACCAGGCCGATCCTTGGCTTGTGCATTATGCCTCTTCGACTGACTCAACGCCCG
62 CGCAG-GGGGGATCAGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGACTGGCTGAGCACCCG
* * *
12251816 TACGCTCGTTTCGTGGGTTGACTTATGCATACG
126 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* * * *
12251849 GAGTTCATTCCCA-GTCTAAGATCAGACCGAACTGACGGTTGCGACAGCAGGATCGATAGCACGC
1 GAGTTCATT-CCATGTCTAAGATCAGACCGAACTGAGGGTTACGGCAGCAGGATCGGTAGCACGC
** * *
12251913 AGGGGGGATCAGGCCGATCCCTGGCTTGTGCATTCTATCTCTCCGACCGGTTGAGCACCCGCACG
65 AGGGGGGATCAGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGACTGGCTGAGCACCCGCACG
* *
12251978 CTCATTTCGTTGGTTGGCTTAGGCATACG
130 CTCGTTTCGTGGGTTGGCTTAGGCATACG
12252007 GAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
12252027 CATATGGAGT
Statistics
Matches: 270, Mismatches: 53, Indels: 28
0.77 0.15 0.08
Matches are distributed among these distances:
156 1 0.00
157 8 0.03
158 136 0.50
159 117 0.43
160 8 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCATGTCTAAGATCAGACCGAACTGAGGGTTACGGCAGCAGGATCGGTAGCACGCA
GGGGGGATCAGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGACTGGCTGAGCACCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATACG
Found at i:12252036 original size:26 final size:26
Alignment explanation
Indices: 12252000--12252052 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12251990 GTTGGCTTAG
12252000 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12252026 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12252052 G
1 G
12252053 ATTTTGACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12253571 original size:171 final size:171
Alignment explanation
Indices: 12253355--12253786 Score: 541
Period size: 171 Copynumber: 2.5 Consensus size: 171
12253345 GATCCTCAGG
* * * *
12253355 TTACGCATTCTACCTCTTCGA-CTGGTTGAGCACCTGCACGCTCGTTTTATGGGTTGGCTTAGGC
1 TTACGAATTCTACCTCTCCGATC-GGTTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
* * * *
12253419 ATACGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGCCAGCAGGACTGGCAGC
65 ATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGCCAGCAGGACCGACAAC
12253484 GGGATCAACAGCACGCAGAGAGGGG-CCGGGCCAAT-CCTCGAC
130 GGGATCAACAGCACGCAGAG-GGGGACCGGGCCAATCCCT-GAC
* * *
12253526 TTACGTATTCTACCTATCCGATCGGTTGAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCA
1 TTACGAATTCTACCTCTCCGATCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCA
* * *
12253591 TATGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTAGGACCGACAACG
66 TACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGCCAGCAGGACCGACAACG
* * ** *
12253656 GGATCAGCAGCACGCAGAGGGGGATCGGGCTGATCCCTGGC
131 GGATCAACAGCACGCAGAGGGGGACCGGGCCAATCCCTGAC
* * * * * *
12253697 TTTCGCAATAC-GCCTCTCCGGTCGGTTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGC
1 TTACG-AATTCTACCTCTCCGATCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
* *
12253761 ATACGGACTTCATCCCCA-GTCTAAGC
65 ATACGGAGTTCAT-TCCATGTCTAAGC
12253787 ATACGGAGTT
Statistics
Matches: 226, Mismatches: 30, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
170 4 0.02
171 212 0.94
172 10 0.04
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (171 bp):
TTACGAATTCTACCTCTCCGATCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCA
TACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGCCAGCAGGACCGACAACG
GGATCAACAGCACGCAGAGGGGGACCGGGCCAATCCCTGAC
Found at i:12253789 original size:26 final size:26
Alignment explanation
Indices: 12253759--12253811 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12253749 GTTGACTTAG
*
12253759 GCATACGGACTTCATCCCCAGTCTAA
1 GCATACGGACTTCATCCCCAATCTAA
* *
12253785 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGACTTCATCCCCAATCTAA
12253811 G
1 G
12253812 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCAATCTAA
Found at i:12254289 original size:26 final size:26
Alignment explanation
Indices: 12254260--12254312 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12254250 GTTGGCTTTG
*
12254260 GCATACAGAGTTTA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
*
12254286 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
12254312 G
1 G
12254313 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:12254967 original size:26 final size:26
Alignment explanation
Indices: 12254931--12255009 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
12254921 GTTGACTTAG
*
12254931 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12254957 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12254983 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12255009 G
1 G
12255010 ATGGGACCGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12255330 original size:26 final size:26
Alignment explanation
Indices: 12255300--12255352 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
12255290 GTTGGCTTAG
12255300 GCATACGGAG-TTCATT-CCATGTCTAA
1 GCATACGGAGATT-ATTCCCA-GTCTAA
12255326 GCATACGGAGATTATTCCCAGTCTAA
1 GCATACGGAGATTATTCCCAGTCTAA
12255352 G
1 G
12255353 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGATTATTCCCAGTCTAA
Found at i:12255525 original size:26 final size:26
Alignment explanation
Indices: 12255496--12255548 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12255486 GTTGGCTTAG
12255496 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
12255522 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
12255548 G
1 G
12255549 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:12255549 original size:196 final size:195
Alignment explanation
Indices: 12255204--12256296 Score: 1049
Period size: 196 Copynumber: 5.6 Consensus size: 195
12255194 GCGGGACCGG
* ** * * * *
12255204 CAGCACACAGAGGGGGACCGAGCCGATCCCCTACTTGCGCATTATGCCTCTCCGATCGGCTTAGC
1 CAGCACACAG-GGGGGATCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGCT-GGCTGAGC
* *
12255269 ACCCGAATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGG
64 ACCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGG
*
12255334 AGATT-ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGACCAGCAGAAGGAT
129 AG-TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGACCAGCAGAAGGAT
12255398 CGA
193 CGA
* * *
12255401 CAGCACACAGGGGGGA-CTGAGCC-AGTCCCCGGCTTACGCATTCTGCCTCTCCGGCTAGCTAAA
1 CAGCACACAGGGGGGATC-GAGCCGA-TCCCCGGCTTACGCATTCTGCCTCTCC-GCTGGCTGAG
* * *
12255464 CGCCCGAACGCTAGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
63 CACCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
* ** * * * * * *
12255529 GAGTTCATTTCCAGTCTAAGATCAAACCAGATCAAGGGTTACGGTAGCAGGATCAGCAGTAGGAT
128 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGACCAGCAGAAGGAT
12255594 CGA
193 CGA
* * * * * * * *
12255597 CAGCATGCA-AGGGGGGATCGGGTCGATCCTCGGTTTACGCATTCTACCTCTTCGATCGGCCGAG
1 CAGCA--CACAGGGGGGATCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGCT-GGCTGAG
* *
12255661 CACCC-ACACGCTCGTTTCATGGGTAGGCTTGGGCATACGGAGTTCATTCCATGTCTAAGCATAC
63 CACCCGA-ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC
* * * *
12255725 AGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTT------GC-GG--TAGC---AGGA
127 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGACCAGCAGAAGGA
*
12255778 TCAA
192 TCGA
** ** * * * * *
12255782 CAGCACGTAGTAGGGATCGAGCCGGTCCTCGGCTTACGCATTCTGCCTTTCTAGCCGGCTGAGCA
1 CAGCACACAGGGGGGATCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTC-CGCTGGCTGAGCA
* * * * *
12255847 CCCGCACGCTCGTTTCGTGGGTTGGCTTTGGCATACGGAGTTCATTCCATGTCTAAACATATGGA
65 CCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
* * * * *
12255912 GTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGTTTGCGGCAGCAGGACTAGCAGCAGGATCG
130 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGACCAGCAGAAGGATCG
12255977 A
195 A
* * * * * * **
12255978 CAGTACGCAGGGGGGAT-TAGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCAG-TCGATTGAG
1 CAGCACACAGGGGGGATCGA-GCCGATCCCCGGCTTACGCATTCTGCCTCTCC-GCT-GGCTGAG
* * * *
12256041 CACCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATG
63 CACCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
* * * * * * *
12256106 GAGTTCATTCCCAGTCTAAGATCGGACTGAACTGAGGGTTACGACAGTAAGACCAACA-ATAGGA
128 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGACCAGCAGA-AGGA
*
12256170 TCAA
192 TCGA
** * * * * *
12256174 CAGCATGCAGGGGGGATCGGGTCGATCCTCGGCTTATGCATTCTGCCTTTCCTGCCT-GCTGAGC
1 CAGCACACAGGGGGGATCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCC-G-CTGGCTGAGC
* * * * * * *
12256238 GCTCGCATGCTCGTTTCATGGGTTGGCTTAGGCATATGAATTTCATTCCATGTCTAAGC
64 ACCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12256297 CCCAACCAGA
Statistics
Matches: 739, Mismatches: 125, Indels: 65
0.80 0.13 0.07
Matches are distributed among these distances:
183 1 0.00
184 133 0.18
185 13 0.02
188 3 0.00
190 4 0.01
191 4 0.01
193 4 0.01
195 5 0.01
196 427 0.58
197 140 0.19
198 5 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (195 bp):
CAGCACACAGGGGGGATCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGCTGGCTGAGCAC
CCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGACCAGCAGAAGGATCGA
Found at i:12255723 original size:26 final size:26
Alignment explanation
Indices: 12255693--12255745 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12255683 GTAGGCTTGG
*
12255693 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12255719 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12255745 G
1 G
12255746 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12255914 original size:26 final size:26
Alignment explanation
Indices: 12255878--12255928 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12255868 TTGGCTTTGG
12255878 CATACGGAGTTCATT-CCATGTCTAAA
1 CATACGGAGTTCATTCCCA-GTCTAAA
*
12255904 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
12255929 GATTGGACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:12256102 original size:26 final size:26
Alignment explanation
Indices: 12256073--12256125 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12256063 GTTGGCTTAG
12256073 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12256099 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12256125 G
1 G
12256126 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12256482 original size:171 final size:170
Alignment explanation
Indices: 12256096--12256486 Score: 394
Period size: 171 Copynumber: 2.3 Consensus size: 170
12256086 ATTCCATGTC
* * * *
12256096 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGAACTGAGGGTTACGACAGTAAGACCA
1 TAAGCATATGGTGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGTAAGACCA
* * * * * *
12256161 ACAATAGGATCAACAGCATGCAGGGGGGATCGGGTCGATCCTCGGCTTATGCATTCTGCCTTTCC
66 ACAATAGGATCAACAGCACGCAGGGGGGACCGGGTCGATCCCCAGCTTAGGCATTATGCCTTTCC
* * *
12256226 TGCCTGCTGAGCGCTCGCATGCTCGTTTCATGGGTTGGCT
131 TGCCTGCTCAGCGCTCGAATGCTCGTTTCATGGGTTGACT
* * ** ** * * *
12256266 TAGGCATATGAAT-TTCATT-CCATGTCTAAGCCCCAACCAGACCGAGGGTTATGACAGTAGGAC
1 TAAGCATATG-GTGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTACGACAGTAAGAC
** * * * *
12256329 CGGCAGTGGGATCAACAGCACGCAGAGGGGGACCGGG-CTTATCCCCAGCTTGGGCATTATGCCT
64 CAACAATAGGATCAACAGCACGCAG-GGGGGACCGGGTC-GATCCCCAGCTTAGGCATTATGCCT
* ** * * *
12256393 TTTC-GGTTGACTCAGTGCTCGAATGCTTGTTTCGTGGGTTGACT
127 TTCCTGCCTG-CTCAGCGCTCGAATGCTCGTTTCATGGGTTGACT
*
12256437 TAAGCATACGGTGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
1 TAAGCATATGGTGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
12256487 GCGGTAGCAG
Statistics
Matches: 172, Mismatches: 42, Indels: 13
0.76 0.19 0.06
Matches are distributed among these distances:
169 3 0.02
170 70 0.41
171 96 0.56
172 3 0.02
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (170 bp):
TAAGCATATGGTGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGTAAGACCA
ACAATAGGATCAACAGCACGCAGGGGGGACCGGGTCGATCCCCAGCTTAGGCATTATGCCTTTCC
TGCCTGCTCAGCGCTCGAATGCTCGTTTCATGGGTTGACT
Found at i:12256638 original size:25 final size:26
Alignment explanation
Indices: 12256598--12256649 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
12256588 GTTGGCTTAG
12256598 GCATACGAAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCTCA-GTCTAA
12256624 GCATACG-AGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
12256649 G
1 G
12256650 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACGAAGTTCATTCTCAGTCTAA
Found at i:12257170 original size:26 final size:26
Alignment explanation
Indices: 12257134--12257186 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12257124 GTTGGCTTAG
12257134 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
12257160 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
12257186 G
1 G
12257187 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:12258259 original size:159 final size:158
Alignment explanation
Indices: 12257881--12258311 Score: 379
Period size: 159 Copynumber: 2.7 Consensus size: 158
12257871 CCCAGTCCAA
* * * * * * * *
12257881 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGGTTTCGACAATAGGATCAGCA
1 GCATACGAAGTTCATTTCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGACAGTAGGATCGGTA
* * * * * *
12257946 GCCCGCAGGGGGGATCGAGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCT
66 GCACGCAGGAGGGATCGAGTCGATCCCCGACTTGCGCATTATGCCTCTCCGGCTAGCTGAGCACC
*
12258011 CGCACGCCTGTTTCATGGGTTGGCTTAG
131 CGCACGCCTGTTTCATGGGTTGACTTAG
* ** * * **
12258039 GCATAGGGGGTTCA-TTCCATGTCTAAGCCTCAG-TCGGACTGAGGGTTGTGGTAGTAGGATCGG
1 GCATACGAAGTTCATTTCCA-GTCTAAG-ATCAGATCGGACTGAGGGTTGCGACAGTAGGATCGG
* * * * * * *
12258102 TAGCATGCAGAGAGGGATCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTTC-GATCAGCTTAG
64 TAGCACGCAG-GAGGGATCGAGTCGATCCCCGACTTGCGCATTATGCCTCTCCGGCT-AGCTGAG
*
12258166 CACCCGCACGCTCAT-TTT-GTGGGTTGACTTAG
127 CACCCGCACGC-C-TGTTTCATGGGTTGACTTAG
* * * * *
12258198 GCATACGAAGTTCATTTCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAAGATCGATA
1 GCATACGAAGTTCATTTCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGACAGTAGGATCGGTA
* * * * * * *
12258263 GCACGTAGGGGGGACCGAG-CTGATCCCTGACTAGCACATTCTGCCTCTC
66 GCACGCAGGAGGGATCGAGTC-GATCCCCGACTTGCGCATTATGCCTCTC
12258312 TGATCGGTTG
Statistics
Matches: 210, Mismatches: 54, Indels: 18
0.74 0.19 0.06
Matches are distributed among these distances:
157 5 0.02
158 81 0.39
159 114 0.54
160 9 0.04
161 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGAAGTTCATTTCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGACAGTAGGATCGGTA
GCACGCAGGAGGGATCGAGTCGATCCCCGACTTGCGCATTATGCCTCTCCGGCTAGCTGAGCACC
CGCACGCCTGTTTCATGGGTTGACTTAG
Found at i:12259310 original size:182 final size:182
Alignment explanation
Indices: 12259078--12259629 Score: 619
Period size: 184 Copynumber: 3.0 Consensus size: 182
12259068 ATTGACTTAG
* * * * *
12259078 GCATACGGAGTTCATTCACAGTCTAAGATCAGA-CTAGATCAAGGGTTGCGGTAGTAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGATCGAGGGTTGCGGCAGTAGGATCGGT
* * * * * *
12259142 AGCACACAGGGGCCATCGGGTCGGTCCCCGACTTGCGCATTTTGCCTCTCCGGCCGGTTGAGCGC
65 AGCACATAGGGGGCATCGGG-CGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGATTGAGCGC
* *
12259207 CCGTACGCTCGTTTCGTGGGTTCGCTTAGGCATACGGAGTTCATCCATGTCTAA
129 CCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATCCATGTCTAA
** *
12259261 GCATACGGAGTTCATTCCCA-TCTAAGATCGGATCAGATCGAGGGTTGCGGCAGCGGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGGCAGTAGGATCGGTA
* * * * * *
12259325 GCACATAGGGGGCACCGGGCTGATCCTC-AGCTTGCGCATTCTGCTTCTTCGACCGACTAAGCGC
66 GCACATAGGGGGCATCGGGC-GATCCCCGA-CTTGCGCATTCTGCCTCTCCGACCGATTGAGCGC
* * * *
12259389 CCGCACGCTTGTTTCGTGGGTTAACTTAGGCATACGAAGTTCATCCCCA-ATCTAA
129 CCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCAT--CCATGTCTAA
* * *
12259444 GCATATGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGGCAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGGCAGTAGGATCGGTA
* * * * * * * *
12259509 GCACGTAGGGGGGATCAAGCCGATCCTCGGA-TTACGCATTCTGCCACTCCGACCGATTGAGAGC
66 GCACATAGGGGGCATC-GGGCGATCC-CCGACTTGCGCATTCTGCCTCTCCGACCGATTGAGCGC
* * * *
12259573 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
129 CCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCA-TCCATGTCTAA
12259628 GC
1 GC
12259630 CCCAACCGGA
Statistics
Matches: 304, Mismatches: 54, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
181 2 0.01
182 122 0.40
183 47 0.15
184 129 0.42
185 3 0.01
186 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (182 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGGCAGTAGGATCGGTA
GCACATAGGGGGCATCGGGCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGATTGAGCGCCC
GCACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATCCATGTCTAA
Found at i:12259920 original size:158 final size:157
Alignment explanation
Indices: 12259444--12259945 Score: 494
Period size: 158 Copynumber: 3.2 Consensus size: 157
12259434 CCCAATCTAA
*
12259444 GCATATGGAGTTCATTCCCA-GTCTAAGAT-TGGAT-CGGATCGAGGGTTGCGGCAGTAGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCT-G-TCCGGATCGAGGGTTGCGGCAGTAGGATCG
* ** * * * * *
12259506 GTAGCACGTAGGGGGGATCAAGCCGATCCTCGGATTACGCATTCTGCCACTCCGACCGATTGAGA
63 GCAGCACGTAGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGA
* *
12259571 GCCCGCACGCCCGTTTCATGGGTTGGCTTAG
128 GCCCGAACGCTCGTTTCATGGGTT-GCTTAG
* ** *** * **
12259602 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTGTGGCAGCGGGA-CTGGC
1 GCATACGGAGTTCATTCCATGTCTAAGATCTGTCCGGATCGAGGGTTGCGGCAGTAGGATC-GGC
* * * * * * *
12259666 AGCACGTAGAGGGGGACCGGGTCAATCCTCGGCTTGTGCATTATGCCTCTCCGGCTGACTCAGCA
65 AGCACGTAG-GGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAG-A
*
12259731 -CCCGAACGCTCGTTTCATGGGTTGACCTAG
128 GCCCGAACGCTCGTTTCATGGGTTG-CTTAG
** * * *
12259761 GCATACGGAGTTCATTCCCA-GTCTAAGATCTGTCCAAACCGAGGGTTGCGGTAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCTGTCCGGATCGAGGGTTGCGGCAGTAGGATCGGC
* * * * * * *
12259825 AGCACGCAGGGGGCATCGGGTCGGTCCTTGGCTTGCCCATTCTGCCTCTCCGACCGGCTGAGTGC
65 AGCACGTAGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGAGC
* *
12259890 CCGTACGCTCATTTCATGGGTTCGCTTAG
130 CCGAACGCTCGTTTCATGGGTT-GCTTAG
12259919 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
12259946 CATATGGAGT
Statistics
Matches: 274, Mismatches: 58, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
157 7 0.03
158 145 0.53
159 117 0.43
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCTGTCCGGATCGAGGGTTGCGGCAGTAGGATCGGCA
GCACGTAGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGAGCC
CGAACGCTCGTTTCATGGGTTGCTTAG
Found at i:12259969 original size:26 final size:26
Alignment explanation
Indices: 12259919--12259971 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12259909 GTTCGCTTAG
*
12259919 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
12259945 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
12259971 G
1 G
12259972 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:12260168 original size:26 final size:26
Alignment explanation
Indices: 12260128--12260180 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12260118 GTTGACGTAG
*
12260128 GCATACGGAGGTCATCCCCAGTCTAA
1 GCATACGAAGGTCATCCCCAGTCTAA
* *
12260154 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGGTCATCCCCAGTCTAA
12260180 G
1 G
12260181 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGAAGGTCATCCCCAGTCTAA
Found at i:12260455 original size:159 final size:157
Alignment explanation
Indices: 12260154--12260497 Score: 417
Period size: 159 Copynumber: 2.2 Consensus size: 157
12260144 CCCAGTCTAA
** * ** * *
12260154 GCATACGAAGTTCATTCCCA-GTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCAAGATCGAC
1 GCATACGAAGTTCATT-CCATGTCTAAGCCCCAGTCAGACCGAGGGTTACGGCAGCAAGACCGAC
* * * * *
12260218 AGCACGTAGGGGGATCGGACCGATCCTCGGCTTGTGCATTCTGCCTCTCTGGCTGGCTGAGCACC
65 AGCACGTAGGGGGATCGGACCGATCCCCGACTTGTGCATTCTGCATCTCCGGCTGACTGAGCACC
12260283 CGCACGCCTGTTTCGTGGGTTGGCTTAG
130 CGCACGCCTGTTTCGTGGGTTGGCTTAG
* * ** * **
12260311 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCAGGACCGGTA
1 GCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTACGGCAGCAAGACCGACA
* *
12260376 GCACGTAGAGGGGGA-CTGGGCCGATCCCCGACTTGTGCATTCTGTATCTCCGGCTGACTGAGCA
66 GCACGT--AGGGGGATC-GGACCGATCCCCGACTTGTGCATTCTGCATCTCCGGCTGACTGAGCA
12260440 CCCGCGA-G-CTCGTTTCGTGGGTTGGCTTAG
128 CCCGC-ACGCCT-GTTTCGTGGGTTGGCTTAG
12260470 GCATACGAAGTTCATTCCATGTCTAAGC
1 GCATACGAAGTTCATTCCATGTCTAAGC
12260498 ATACGAAGTT
Statistics
Matches: 158, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
156 3 0.02
157 53 0.34
158 3 0.02
159 98 0.62
160 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTACGGCAGCAAGACCGACA
GCACGTAGGGGGATCGGACCGATCCCCGACTTGTGCATTCTGCATCTCCGGCTGACTGAGCACCC
GCACGCCTGTTTCGTGGGTTGGCTTAG
Found at i:12260520 original size:26 final size:26
Alignment explanation
Indices: 12260470--12260522 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12260460 GTTGGCTTAG
*
12260470 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
12260496 GCATACGAAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
12260522 G
1 G
12260523 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:12261303 original size:26 final size:26
Alignment explanation
Indices: 12261273--12261325 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12261263 GTTGGCTTAG
12261273 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12261299 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12261325 G
1 G
12261326 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12261691 original size:171 final size:170
Alignment explanation
Indices: 12261367--12261700 Score: 404
Period size: 171 Copynumber: 2.0 Consensus size: 170
12261357 ACCAGCAATA
* * *
12261367 GGATTGGCAGCACGTAGGGGGGATCGGGTCAATCCCTGGCTTATGCATTCTACCTTTCCGACCAG
1 GGATTGACAGCACATAGGGGGGACCGGGTCAATCCCTGGCTTATGCATTCTACCTTTCCGACCAG
* * * * *
12261432 CTGAGCACCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCTTGTCTAAGC
66 CTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATGCCATGCCTAAGC
* *
12261497 CCCAACCGAATCGACAATTGTGGCAGCTGGACCGGCAGCG
131 CCCAACCGAACCGACAATTGTGGCAGCAGGACCGGCAGCG
* ** *
12261537 GGATTGACAGCACATAGAGGGGGACCGGG-CTGATCCCTGGCTT-TCGCATTCTACCTTTTTGAT
1 GGATTGACAGCACATAG-GGGGGACCGGGTC-AATCCCTGGCTTAT-GCATTCTACCTTTCCGAC
* * **
12261600 C-GACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCGTAGGGAGTTCATGCCATGCCT
63 CAG-CTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATGCCATGCCT
* * ***
12261664 AAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACC
127 AAGCCCCAACCGAACCGACAATTGTGGCAGCAGGACC
12261701 AATAGCACGT
Statistics
Matches: 137, Mismatches: 23, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
170 18 0.13
171 119 0.87
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (170 bp):
GGATTGACAGCACATAGGGGGGACCGGGTCAATCCCTGGCTTATGCATTCTACCTTTCCGACCAG
CTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATGCCATGCCTAAGC
CCCAACCGAACCGACAATTGTGGCAGCAGGACCGGCAGCG
Found at i:12262340 original size:26 final size:26
Alignment explanation
Indices: 12262289--12262341 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12262279 GTTGGCTTAG
*
12262289 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
12262315 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
12262341 G
1 G
12262342 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:12269145 original size:26 final size:26
Alignment explanation
Indices: 12269095--12269145 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12269085 TGGCTTAGGG
*
12269095 ATACGGAGTTCATTCCATGTGTAAGC
1 ATACGGAGTTCATTCCATGTCTAAGC
12269121 ATACGGAGTTCATTCCCA-GTCTAAG
1 ATACGGAGTTCATT-CCATGTCTAAG
12269146 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATGTCTAAGC
Found at i:12269493 original size:159 final size:157
Alignment explanation
Indices: 12269181--12269635 Score: 556
Period size: 159 Copynumber: 2.9 Consensus size: 157
12269171 AGTAGGACCA
* *
12269181 GCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGAT-CCTCGGCTTGCGCATTTTGCCTCTC
1 GCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCT-GGCTTGCGCATTATGCCTCTT
* * * *
12269245 CGACCGACTGAGTGCCCTCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCAT
65 CGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-
** *
12269309 GTCTAAGCCCCAGCCGGACTGAGGGTTGTG
129 GTCTAAG-ATCAGCCGGACTGAGGGTTGCG
* *
12269339 GCAGCAGGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTT
1 GCAGCAGGATCGGCAGCACGCAG-GGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTT
* * * *
12269404 CGGCCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAG
65 CGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
12269469 TCTAAGATCAGACCGGA-TCGAGGGTTGCG
130 TCTAAGATCAG-CCGGACT-GAGGGTTGCG
* * ** * * * * * *
12269498 GCAGCAGGATTGACAGCACATAGGAGGGGACTGGGCCGAACCCCGACTTGCGCATTCTACCTCTT
1 GCAGCAGGATCGGCAGCACGCAGG-GGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTT
* * * * *
12269563 CGACCGGATGAGGGCCCGCACGCTCGTTTCGTGGGCTGGCTTAGGCGTACGGAGTTCATTCCCAG
65 CGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
12269628 TCTAAGAT
130 TCTAAGAT
12269636 TTTGAGCCAC
Statistics
Matches: 255, Mismatches: 36, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
158 27 0.11
159 222 0.87
160 6 0.02
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.21
Consensus pattern (157 bp):
GCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTC
GACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
CTAAGATCAGCCGGACTGAGGGTTGCG
Found at i:12270332 original size:26 final size:26
Alignment explanation
Indices: 12270302--12270354 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12270292 GTTCATTTAG
12270302 GCATACGGA-GTTCATCCCCAGTCTAA
1 GCATAC-GATGTTCATCCCCAGTCTAA
*
12270328 GCATACGATGTTCATTCCCAGTCTAA
1 GCATACGATGTTCATCCCCAGTCTAA
12270354 G
1 G
12270355 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGATGTTCATCCCCAGTCTAA
Found at i:12270616 original size:158 final size:158
Alignment explanation
Indices: 12270328--12270828 Score: 528
Period size: 158 Copynumber: 3.2 Consensus size: 158
12270318 CCCAGTCTAA
* * * * * * * *
12270328 GCATAC-GATGTTCATTCCCA-GTCTAAGATCGGACCAGACTGAGAGTTGCGGCTGCAGGATCGG
1 GCATACGGA-GTTCATT-CCATGTCTAAGACCAGATCAGACCGAGGGTTGCAGCAGCAGGATCGA
* * **
12270391 CACCACGCAGAGGGGATCGGGCTGATCTTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCA
64 CAGCACGCAGAGGGGATCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCA
** * *
12270456 CCCGTATGCCCGTTTCGTGGGTTGGCTTAG
129 CCCACACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** *
12270486 GCATAGGGAGTTCATTCCATGTGTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGCGGGATCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGATCAGACCGAGGGTTGCAGCAGCAGGATCGAC
* * * * * *
12270550 AGCACGCAGAGGGGATCGGG-TCGGTCCCCGGCTTACGCATTATGCCTCTTCGGCCGGCTTAGCA
65 AGCACGCAGAGGGGATCGGGCT-GATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCA
* *
12270614 CCCACACGCTCGTTTCGTGGGTTGACTTAT
129 CCCACACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
12270644 GCATACGGTGTTTATTCCCA-GTCTAAGATCGGATCAGATCGAGGGTTGCAGCAGCAGGATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGATCAGACCGAGGGTTGCAGCAGCAGGATCGAC
* * * *
12270708 AGCACGCA-AGGGGGACCGGGCTGATCCTTGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCG
65 AGCACGCAGA-GGGGATCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCA
*
12270772 CCCACACGCTCGTTTCATGGGTTGGCTTAG
129 CCCACACGCTCGTTTCGTGGGTTGGCTTAG
*
12270802 GCATACGGAGTTCATTCCATGGCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
12270829 CATACGGAGT
Statistics
Matches: 278, Mismatches: 56, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
157 10 0.04
158 260 0.94
159 8 0.03
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGATCAGACCGAGGGTTGCAGCAGCAGGATCGACA
GCACGCAGAGGGGATCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACC
CACACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12270837 original size:26 final size:25
Alignment explanation
Indices: 12270802--12270906 Score: 129
Period size: 26 Copynumber: 4.0 Consensus size: 25
12270792 GTTGGCTTAG
*
12270802 GCATACGGAGTTCATTCCATGGCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
*
12270828 GCATACGGAGTTCATTCCCAGTCTAG
1 GCATACGGAGTTCATT-CCAGTCTAA
*
12270854 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCAT-TCCAGTCTAA
* *
12270880 GCATACGAAGTCCATTCCCAGTCTAA
1 GCATACGGAGTTCATT-CCAGTCTAA
12270906 G
1 G
12270907 ATTGGACTAG
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
26 66 0.96
27 3 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:12270864 original size:52 final size:52
Alignment explanation
Indices: 12270799--12270904 Score: 160
Period size: 52 Copynumber: 2.0 Consensus size: 52
12270789 TGGGTTGGCT
* * *
12270799 TAGGCATACGGAGTTCAT-TCCATGGCTAAGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATCCCCA-GGCTAAGCATACGAAGTCCATTCCCAGTC
*
12270851 TAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTCCATTCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGGCTAAGCATACGAAGTCCATTCCCAGTC
12270903 TA
1 TA
12270905 AGATTGGACT
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
52 46 0.94
53 3 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (52 bp):
TAGGCATACGGAGTTCATCCCCAGGCTAAGCATACGAAGTCCATTCCCAGTC
Found at i:12271347 original size:552 final size:552
Alignment explanation
Indices: 12270299--12271371 Score: 1524
Period size: 552 Copynumber: 1.9 Consensus size: 552
12270289 TGGGTTCATT
* *
12270299 TAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGATGTTCATTCCCAGTCTAAGATCGGACCA
1 TAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTCCATTCCCAGTCTAAGATCGGACCA
* * * * * * *
12270364 GACTGAGAGTTGCGGCTGCAGGATCGGCACCACGCAGAGGGGATCGGGCTGATCTTCGGCTTGCG
66 GACCGAGAGTTGCGACAGCAGGATCGACACCACGCAGAGGGGATCGGGCTGATCCTCAGCTTGCA
* * * * *
12270429 CATTCTGCCTCTCCGATCGGCTGAGCACCCGTATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
131 CATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCATAGGCATAGGG
* * *
12270494 AGTTCATTCCATGTGTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAG
196 AGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTATGGCAACGGGATCGACAGCACGCAG
* * * *
12270559 AGGGGATCGGGTCGGTCCCCGGCTTACGCATTATGCCTCTTCGGCCGGCTTAGCACCCACACGCT
261 AGGGGATCGGGCCGATCCCCGACTTACGCATTATGCCTCTTCGGCCGGCTCAGCACCCACACGCT
* * * *
12270624 CGTTTCGTGGGTTGACTTATGCATACGGTGTTTATTCCCAGTCTAAGATCGGATCAGATCGAGGG
326 CGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGG
* * * *
12270689 TTGCAGCAGCAGGATCAACAGCACGCAAGGGGGACCGGGCTGATCCTTGGCTTGCGCATTCTGCC
391 TTGCAGCAGCAAGATCAACAGCACGCAAGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTGCC
*
12270754 TCTCCGGCCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC
456 TCTCCGACCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC
12270819 CATGGCTAAGCATACGGAGTTCATTCCCAGTC
521 CATGGCTAAGCATACGGAGTTCATTCCCAGTC
* *
12270851 TAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTCCATTCCCAGTCTAAGATTGGACTA
1 TAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTCCATTCCCAGTCTAAGATCGGACCA
* *
12270916 GACCGAGGGTTGCGACAGCAGGATCGACAGCACGCA-AGGGGGATCGGGAC-GATCCTCAGCTTG
66 GACCGAGAGTTGCGACAGCAGGATCGACACCACGCAGA-GGGGATCGGG-CTGATCCTCAGCTTG
* * *
12270979 CACATTCTGCCTCTCCGACCGGTTGAGCACCTGCACGCCCGTTTCATGTGTTGGCATAGGCATAG
129 CACATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCATAGGCATAG
** *
12271044 GGAGTTCATTCCATGTCTAAGCCCCAGTTGGA-CGAGGGTTATGGCAACGGGA-CTGGCAGCACG
194 GGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTATGGCAACGGGATC-GACAGCACG
* * * * * * *
12271107 TAGAGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGGCTCTTCGGTCGGGTCAGCGCCCGCA
258 CAGA-GGGGATCGGGCCGATCCCCGACTTACGCATTATGCCTCTTCGGCCGGCTCAGCACCCACA
*
12271172 CGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCG
322 CGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCG
* * * * * * *
12271237 AGGGTTGCGGTAGCAAGATCGACAGCACGTAGGGGGGATCGGGCCGATCCTCGACTTGTGCATTC
387 AGGGTTGCAGCAGCAAGATCAACAGCACGCAAGGGGGACCGGGCCGATCCTCGACTTGCGCATTC
* * ** * * *
12271302 TGCCTCTTCGATCGACTGAGCGCCTGCATGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
452 TGCCTCTCCGACCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
12271367 ATTCC
517 ATTCC
12271372 TTGTCTAGGC
Statistics
Matches: 455, Mismatches: 62, Indels: 8
0.87 0.12 0.02
Matches are distributed among these distances:
550 1 0.00
551 30 0.07
552 423 0.93
553 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (552 bp):
TAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTCCATTCCCAGTCTAAGATCGGACCA
GACCGAGAGTTGCGACAGCAGGATCGACACCACGCAGAGGGGATCGGGCTGATCCTCAGCTTGCA
CATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCATAGGCATAGGG
AGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTATGGCAACGGGATCGACAGCACGCAG
AGGGGATCGGGCCGATCCCCGACTTACGCATTATGCCTCTTCGGCCGGCTCAGCACCCACACGCT
CGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGG
TTGCAGCAGCAAGATCAACAGCACGCAAGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTGCC
TCTCCGACCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC
CATGGCTAAGCATACGGAGTTCATTCCCAGTC
Found at i:12271658 original size:159 final size:158
Alignment explanation
Indices: 12270880--12271698 Score: 581
Period size: 158 Copynumber: 5.2 Consensus size: 158
12270870 CCCAGTCTAA
* * ** **
12270880 GCATACGAAGTCCATTCCCAGTCTAAGATTGGA-CTAGACCGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-AGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * * * * * * *
12270944 AGCACGCAAG-GGGGATCGGGACGATCCTC-AGCTTGCACATTCTGCCTCTCCGACCGGTTGAGC
65 AGCACGCAAGAGGGGATCGGGCCGATCCCCGA-CTTGCGCATTATGCCTCTTCGGCCAGCTAAGC
* * * * *
12271007 ACCTGCACGCCCGTTTCATGTGTTGGCATAG
129 GCC-GCACGCTCGTTTCGTGGGTTGGCTTAG
* ** ** ** * * *
12271038 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TTGGA-CGAGGGTTATGGCAACGGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAGACCGAGGGTTGCGGTAGCAGGATC-G
* * * * * * *
12271099 GCAGCACG-TAGAGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGGCTCTTCGGTCGGGTCA
63 ACAGCACGCAAGA-GGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCAGCTAA
* *
12271163 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
127 GCG-CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
12271196 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * ** *
12271261 GCACG-TAGGGGGGATCGGGCCGATCCTCGACTTGTGCATTCTGCCTCTTCGATC-GACTGAGCG
66 GCACGCAAGAGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCAG-CTAAGCG
* *
12271324 CCTGCATGCTTGTTTCGTGGGTTGGCTTAG
130 CC-GCACGCTCGTTTCGTGGGTTGGCTTAG
** * ** * * * *
12271354 GCATACGGAGTTCATTCCTTGTCTAGGCCCCAG-TCAGACCAAGGGTTGTGGCAGCGGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGATCAGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * * *
12271418 AGCACACAA-AGGGG-TACTGGACCGATCCTCGGCTTACGCATTATGCCTCTTCGGCCAGCTCAA
65 AGCACGCAAGAGGGGAT-C-GGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCAGCT-AA
* ** * * *
12271481 TG-TCTACACACTCATTTCGTAGGTTGAG-TTAG
127 -GCGCCGCACGCTCGTTTCGTGGGTTG-GCTTAG
* * * * * *
12271513 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACTGAGGGTTGCGATAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * *
12271578 GCACGCAAGAGGGGATCGGGTCGGTCCCCGGCTTGTGCATTCTGCCTCTTCGGCCAGCTAAGTGA
66 GCACGCAAGAGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCAGCTAAGCG-
* *
12271643 CCGCACGCCCGTTTCGTCGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
12271672 GCTTAGGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
12271699 CCCCAGTCAG
Statistics
Matches: 513, Mismatches: 119, Indels: 57
0.74 0.17 0.08
Matches are distributed among these distances:
156 3 0.01
157 34 0.07
158 245 0.48
159 218 0.42
160 11 0.02
161 2 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAAGAGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCAGCTAAGCGC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12271715 original size:159 final size:159
Alignment explanation
Indices: 12270915--12271740 Score: 640
Period size: 159 Copynumber: 5.2 Consensus size: 159
12270905 AGATTGGACT
* * *
12270915 AGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAAG-GGGGATCGGGACGATCCTCAGCTTG
1 AGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGAGGGGATCGGGCCGATCCTCGGCTTG
* * * * * * * * * *
12270979 CACATTCTGCCTCTCCGACCGGTTGAGC-ACCTGCACGCCCGTTTCATGTGTTGGCATAGGCATA
66 CGCATTCTGCCTCTTCGGCCAGCTAAGCGACC-GCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
* *
12271043 GGGAGTTCATTCCATGTCTAAGCCCCAGTT
130 CGGAGTTCATTCCATGTCTAAGCCCCAGTC
* ** * * * * * *
12271073 GGA-CGAGGGTTATGGCAACGGGA-CTGGCAGCACG-TAGAGGGGGATCGGGCCGATCCCCGACT
1 AGACCGAGGGTTGCGGCAGCAGGATC-GACAGCACGCAAGA-GGGGATCGGGCCGATCCTCGGCT
* * * * * * * * *
12271135 TGCGCATTATGGCTCTTCGGTCGGGTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCAT
64 TGCGCATTCTGCCTCTTCGGCCAGCTAAGCGACCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
**
12271200 ACGGAGTTCATTCCCA-GTCTAAG-ATCAGATC
129 ACGGAGTTCATT-CCATGTCTAAGCCCCAG-TC
* * * * * *
12271231 GGACCGAGGGTTGCGGTAGCAAGATCGACAGCACG-TAGGGGGGATCGGGCCGATCCTCGACTTG
1 AGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGAGGGGATCGGGCCGATCCTCGGCTTG
* ** * * *
12271295 TGCATTCTGCCTCTTCGATC-GACTGAGCG-CCTGCATGCTTGTTTCGTGGGTTGGCTTAGGCAT
66 CGCATTCTGCCTCTTCGGCCAG-CTAAGCGACC-GCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
* *
12271358 ACGGAGTTCATTCCTTGTCTAGGCCCCAGTC
129 ACGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * * * *
12271389 AGACCAAGGGTTGTGGCAGCGGGATCGACAGCACACAA-AGGGG-TACTGGACCGATCCTCGGCT
1 AGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGAGGGGAT-C-GGGCCGATCCTCGGCT
* * * * ** * * *
12271452 TACGCATTATGCCTCTTCGGCCAGCTCAA-TGTCTACACACTCATTTCGTAGGTTGAG-TTAGGC
64 TGCGCATTCTGCCTCTTCGGCCAGCT-AAGCGACCGCACGCTCGTTTCGTGGGTTG-GCTTAGGC
* ** * *
12271515 ATACGGAGTTCATTCCCA-ATCTAAG-ATCGGACC
127 ATACGGAGTTCATT-CCATGTCTAAGCCCCAG-TC
* ** * * * *
12271548 AGACTGAGGGTTGCGATAGCAGGATCGATAGCACGCAAGAGGGGATCGGGTCGGTCCCCGGCTTG
1 AGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGAGGGGATCGGGCCGATCCTCGGCTTG
* * * * * *
12271613 TGCATTCTGCCTCTTCGGCCAGCTAAGTGACCGCACGCCCGTTTCGTCGGTTGGCTTAGGCTTAG
66 CGCATTCTGCCTCTTCGGCCAGCTAAGCGACCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
12271678 GGAGTTCATTCCATGTCTAAGCCCCAGTC
131 GGAGTTCATTCCATGTCTAAGCCCCAGTC
** * ** *
12271707 AGATTGAGGGTTGTGGCAGTGGGATCGGCAGCAC
1 AGACCGAGGGTTGCGGCAGCAGGATCGACAGCAC
12271741 ACATAGTGGG
Statistics
Matches: 518, Mismatches: 123, Indels: 53
0.75 0.18 0.08
Matches are distributed among these distances:
156 3 0.01
157 32 0.06
158 223 0.43
159 244 0.47
160 15 0.03
161 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (159 bp):
AGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGAGGGGATCGGGCCGATCCTCGGCTTG
CGCATTCTGCCTCTTCGGCCAGCTAAGCGACCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
GGAGTTCATTCCATGTCTAAGCCCCAGTC
Found at i:12272171 original size:26 final size:26
Alignment explanation
Indices: 12272134--12272186 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12272124 GTTGACTTAG
*
12272134 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
12272160 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12272186 G
1 G
12272187 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12272807 original size:184 final size:184
Alignment explanation
Indices: 12272477--12272846 Score: 422
Period size: 184 Copynumber: 2.0 Consensus size: 184
12272467 GTTGACTTAT
* * *
12272477 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCAACAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCACTATAAGATCAGACTGAACTGAGGGTTGCAACAGCAGGATCGACA
* ** * * *
12272542 GCACGCAAGGGGAACTGGGCTGATCCCCGTCTTGCACGTTATGCCTCTCCGGCCGGCTGAGCGCC
66 GCACGCAAGGGGAACCGGGCCAATCCCCGACTTGCACATTATGCCTCTCCGGCCGGCTGAGCACC
*** * *
12272607 CAGACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAA
131 CAGACACCCATTTCGTGAGTTGACTTAGGCATACGGAATTCAT-CCCATGTCTAA
* * * * **
12272661 GCATACGGAGTTCATTCCCACTATCAGATCGGA-TCGAACTGAGGGTTGCGACAGCAGGATCGGT
1 GCATACGAAGTTCATTCCCACTATAAGATCAGACT-GAACTGAGGGTTGCAACAGCAGGATCGAC
* * * * *
12272725 AGCACGCAGGGGGGACCGGGCCAATCCTCGACTTGCACATTCTGCCTCTCCGGTCGGCTGAGCAC
65 AGCACGCAAGGGGAACCGGGCCAATCCCCGACTTGCACATTATGCCTCTCCGGCCGGCTGAGCAC
* * * * *
12272790 CC-GTACACCCGTTTCGTGAGTTGGCTTAGGCTTAGGGAATTCATTCCATGTCTAA
130 CCAG-ACACCCATTTCGTGAGTTGACTTAGGCATACGGAATTCATCCCATGTCTAA
12272845 GC
1 GC
12272847 CCCAGTCGGA
Statistics
Matches: 153, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
183 5 0.03
184 148 0.97
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (184 bp):
GCATACGAAGTTCATTCCCACTATAAGATCAGACTGAACTGAGGGTTGCAACAGCAGGATCGACA
GCACGCAAGGGGAACCGGGCCAATCCCCGACTTGCACATTATGCCTCTCCGGCCGGCTGAGCACC
CAGACACCCATTTCGTGAGTTGACTTAGGCATACGGAATTCATCCCATGTCTAA
Found at i:12273090 original size:501 final size:501
Alignment explanation
Indices: 12272122--12273190 Score: 1296
Period size: 501 Copynumber: 2.1 Consensus size: 501
12272112 ACCGGCTGAG
* * *
12272122 GGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
1 GGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCACTATAAG
* *
12272187 ATCAGATCGGATCGAAGGTTACGACAGCAGGATCAGCAGCACGCAGGGGGGACCAGGCCGATCCC
66 ATCAGATCGAATCGAAGGTTACGACAGCAGGATCAGCAGCACGCAGGGGGGACCAGGCCAATCCC
* * * * * * *
12272252 TGGCTTTCGCATTCTACCTCTCTGGTCGGTTGAGAAATCGTACACCCAATTCATGGGTTGGCTTA
131 TGACTTGCACATTCTACCTCTCCGGTCGGCTGAGAAACCGTACACCCAATTCATGAGTTGGCTTA
* * *
12272317 GGCATAGGGATTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTATGGCAGTGGGACTGGC
196 GGCATAGGGAATTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGATTATGGCAGCGGGACTGGC
* * * * * *
12272382 CGTACGCAGAGAGGGACCGGGCCAATCCCCAGCTTGCGCATTATGCCTCTTCGGTCAGCTCAACG
261 AGCACGCAAAGAGGGACCGGGCCAATCCCCAGCTTACGCATTATGCCTCTTCAGCCAGCTCAACG
*
12272447 TCCATACGCTCATTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCAGTCTAAGATCAGACT
326 TCCATACGCTCATTTCATGGGTTGACTTATGCATACGAAGTTCATTCCCAGTCTAAGATCAGACT
** *
12272512 GGACTGAGGGTTGCAACAGCAGGATCGACAGCACGCAAGGGGAACTGGGCTGATCCCCGTCTTGC
391 AAACTGAGGGTTGCAACAGCAGGATCGACAGCACGCAAGGGGAACTGAGCTGATCCCCGTCTTGC
* * *
12272577 ACGTTATGCCTCTCCGGCCGGCTGAGCGCCCAG-ACGTTCATTTCGT
456 ACATTATGCCTCTCCGGCCGGCTAAGCGCCC-GTACGCTCATTTCGT
*
12272623 GGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCACTATCAG
1 GGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCACTATAAG
* * * * * *
12272688 ATCGGATCGAA-CTGAGGGTTGCGACAGCAGGATCGGTAGCACGCAGGGGGGACCGGGCCAAT-C
66 ATCAGATCGAATC-GAAGGTTACGACAGCAGGATCAGCAGCACGCAGGGGGGACCAGGCCAATCC
* * * ** *
12272751 CTCGACTTGCACATTCTGCCTCTCCGGTCGGCTGAGCACCCGTACACCCGTTTCGTGAGTTGGCT
130 CT-GACTTGCACATTCTACCTCTCCGGTCGGCTGAGAAACCGTACACCCAATTCATGAGTTGGCT
* * * *
12272816 TAGGCTTAGGGAATTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGATTGTGGCAGCGGGACTG
194 TAGGCATAGGGAATTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGATTATGGCAGCGGGACTG
* * * * * *
12272881 GCAGCACGTAAAGGGGGACCGGGCCGATCCTC-GACTTACGCATTATGCCTCTTCAGCCGGGTC-
259 GCAGCACGCAAAGAGGGACCGGGCCAATCCCCAG-CTTACGCATTATGCCTCTTCAGCCAGCTCA
* **
12272944 A-GTGCC-TGCACGCTCGTTTCATGGGTTGACTTATGCATACGGGGTTCATTCCCAGTCTAAGAT
323 ACGT-CCAT--ACGCTCATTTCATGGGTTGACTTATGCATACGAAGTTCATTCCCAGTCTAAGAT
* **** * * * * *
12273007 CAGA-TCAAAGTGAGGGTTGTGGTAGTAGGATCGATAGCATGC-AGGGAGGACTGAGCTTATCCC
385 CAGACT-AAACTGAGGGTTGCAACAGCAGGATCGACAGCACGCAAGGG-GAACTGAGCTGATCCC
* * * *
12273070 C-TGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCCCGTACGCTCGTTTCGT
448 CGT-CTTGCACATTATGCCTCTCCGGCCGGCTAAGCGCCCGTACGCTCATTTCGT
* ** * * *
12273124 GGGTTGGCTTAGGCATACAAAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAA
1 GGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCACTATAA
12273188 GAT
65 GAT
12273191 TTTGAGACAC
Statistics
Matches: 482, Mismatches: 75, Indels: 22
0.83 0.13 0.04
Matches are distributed among these distances:
499 3 0.01
500 18 0.04
501 461 0.96
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (501 bp):
GGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCACTATAAG
ATCAGATCGAATCGAAGGTTACGACAGCAGGATCAGCAGCACGCAGGGGGGACCAGGCCAATCCC
TGACTTGCACATTCTACCTCTCCGGTCGGCTGAGAAACCGTACACCCAATTCATGAGTTGGCTTA
GGCATAGGGAATTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGATTATGGCAGCGGGACTGGC
AGCACGCAAAGAGGGACCGGGCCAATCCCCAGCTTACGCATTATGCCTCTTCAGCCAGCTCAACG
TCCATACGCTCATTTCATGGGTTGACTTATGCATACGAAGTTCATTCCCAGTCTAAGATCAGACT
AAACTGAGGGTTGCAACAGCAGGATCGACAGCACGCAAGGGGAACTGAGCTGATCCCCGTCTTGC
ACATTATGCCTCTCCGGCCGGCTAAGCGCCCGTACGCTCATTTCGT
Found at i:12273882 original size:26 final size:26
Alignment explanation
Indices: 12273846--12273896 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12273836 TTGACTTAGG
12273846 CATATGGAGTTCATCCCCAGTCTAAC
1 CATATGGAGTTCATCCCCAGTCTAAC
*
12273872 CATATGGAGTTCATTCCCAGTCTAA
1 CATATGGAGTTCATCCCCAGTCTAA
12273897 GATCGGATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATATGGAGTTCATCCCCAGTCTAAC
Found at i:12274356 original size:158 final size:156
Alignment explanation
Indices: 12273875--12274404 Score: 507
Period size: 158 Copynumber: 3.4 Consensus size: 156
12273865 GTCTAACCAT
*
12273875 ATGG-AGTTCATTCCCA-GTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCAAGATCGACAGC
1 ATGGAAGTTCATT-CCATGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCAGGATCGACAGC
** * * *
12273938 ACATAGGGGGGATCGGACCGATCCCCGAC-TCGCACTTTCTGCCTCTCCGGTCGGCTGAGCGCTC
65 ACGCAGGGGGGATCGGATCGATCCCCGGCTTCGCA-TTT-TGCCTCTCCGGTCGACTGAGCGCTC
* * *
12274002 GCACGCCCGTTTTGTGGGTTGGCTTAGGC
128 GCACGCTCATTTCGTGGGTTGGCTTAGGC
* * ** * * **
12274031 ATAGGGAGTTCATTCCATGTCTAAG-GCCCAGCTGGATCGAGGGTTGTGGCAGCAGGATCGGTAG
1 AT-GGAAGTTCATTCCATGTCTAAGATCGGATC-GGATCGAGGGTTGCGGCAGCAGGATCGACAG
* * * * * *
12274095 CACGCAGAGGGGGACCGGGTCGATCCCCGGCTTACGCATTATGCCTCTTCGGTC-AGCTCAGCAC
64 CACGCAG-GGGGGATCGGATCGATCCCCGGCTT-CGCATTTTGCCTCTCCGGTCGA-CTGAGCGC
* * *
12274159 CCGCATGCTCATTTCGTGGGTTGACTTAGGC
126 TCGCACGCTCATTTCGTGGGTTGGCTTAGGC
* * * **
12274190 ATATGAAGTTCATTCTCA-GTCTAAGATCGGATCGGACCGAGGGTTACGATAGCAGGATCGACAG
1 AT-GGAAGTTCATTC-CATGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCAGGATCGACAG
* * * * *
12274254 CACGCAGGGGGGATTGGATTGGTCCTCGGCTTGCGCATTTTGCCTCTCCAGTCGACTGAGCGCTC
64 CACGCAGGGGGGATCGGATCGATCCCCGGCTT-CGCATTTTGCCTCTCCGGTCGACTGAGCGCTC
* *
12274319 GTACGCTCATTTCGTGGGTTGGCTTAGGT
128 GCACGCTCATTTCGTGGGTTGGCTTAGGC
* ** * *
12274348 ATGCGAAGTTCATTCCATGTCTAAG-CCCCAGTCGGACCGAGGGTTGTGGCAGCAGGA
1 ATG-GAAGTTCATTCCATGTCTAAGATCGGA-TCGGATCGAGGGTTGCGGCAGCAGGA
12274405 CCGGTAGCGG
Statistics
Matches: 297, Mismatches: 63, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
156 2 0.01
157 12 0.04
158 157 0.53
159 114 0.38
160 8 0.03
161 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.24
Consensus pattern (156 bp):
ATGGAAGTTCATTCCATGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCA
CGCAGGGGGGATCGGATCGATCCCCGGCTTCGCATTTTGCCTCTCCGGTCGACTGAGCGCTCGCA
CGCTCATTTCGTGGGTTGGCTTAGGC
Found at i:12274556 original size:26 final size:26
Alignment explanation
Indices: 12274517--12274569 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12274507 GTTGACTTAG
* *
12274517 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
*
12274543 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
12274569 G
1 G
12274570 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAGTCTAA
Found at i:12274871 original size:159 final size:158
Alignment explanation
Indices: 12274603--12275046 Score: 371
Period size: 159 Copynumber: 2.8 Consensus size: 158
12274593 GTAGCAAGAT
* * * ** * * * * * *
12274603 CGACAGCACGCAGGGGGGACCGGGCCGAT-GCCTGGCTTGTGCATTCTACCTCTCCGGTCGGCTA
1 CGACAGCACGCAGGGGGGATCGGGCCAATCCCCT-GCTTCCGCATTATGCCTCTTCGATAGGCTC
* * * * ** * * *
12274667 AGTGCCCGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
65 AGCGCCCACACGCTCGTTTCATGGGTTGGATTAGGCATA-CGAGTTCATTCCATGTCTAAGCACC
* *
12274732 A-ACCGGACCGAGGGTTGTGGCAACGGGAC
129 AGACCGGACCGAGGGTTGTAGCAACAGGAC
* * * *
12274761 CGGCAGCACGTAGAGGGGGA-CTGGGCCAATCCCC-GACTTCCGCATTATGCCTTTTCGATCGGC
1 CGACAGCACGCAG-GGGGGATC-GGGCCAATCCCCTG-CTTCCGCATTATGCCTCTTCGATAGGC
* * *
12274824 TCAGCGCCCACACGCTCGTTTCGTGTGTT-GACTTATGCATACAGAGTTCATTCCCA-GTCTAAG
63 TCAGCGCCCACACGCTCGTTTCATGGGTTGGA-TTAGGCATAC-GAGTTCATT-CCATGTCTAAG
* * ** *
12274887 -ATCAGACCGGACCTAGGGTTGTAGCAGTAGGAT
125 CACCAGACCGGACCGAGGGTTGTAGCAACAGGAC
* * * * *
12274920 CGACAGCACGCAGGGGGGATCGGGCCGATCCCCTGCTTGCGCATTCTGCCTCTTCGGTAGGCTGA
1 CGACAGCACGCAGGGGGGATCGGGCCAATCCCCTGCTTCCGCATTATGCCTCTTCGATAGGCTCA
** * *
12274985 GCGCCTGCACGTTCGTTTCATGGGTTGGATTAGGCATACGAAGTTCATTCGATGTCTAAGCA
66 GCGCCCACACGCTCGTTTCATGGGTTGGATTAGGCATACG-AGTTCATTCCATGTCTAAGCA
12275047 TACAGAGTTC
Statistics
Matches: 227, Mismatches: 45, Indels: 27
0.76 0.15 0.09
Matches are distributed among these distances:
157 3 0.01
158 102 0.45
159 117 0.52
160 5 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
CGACAGCACGCAGGGGGGATCGGGCCAATCCCCTGCTTCCGCATTATGCCTCTTCGATAGGCTCA
GCGCCCACACGCTCGTTTCATGGGTTGGATTAGGCATACGAGTTCATTCCATGTCTAAGCACCAG
ACCGGACCGAGGGTTGTAGCAACAGGAC
Found at i:12275022 original size:158 final size:155
Alignment explanation
Indices: 12274543--12275034 Score: 474
Period size: 158 Copynumber: 3.1 Consensus size: 155
12274533 CCCATTCTAA
* *
12274543 GCATACGGAATTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGTAGCAA-GATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTT---GTAGCAAGGATCGAC
* * * * *
12274607 AGCACGCAGGGGGGACCGGGCCGAT-GCCTGGCTTGTGCATTCTACCTCTCCGGTCGGCTAAGTG
63 AGCACGCAGGGGGGA-CGGGCCGATCCCCT-GCTTGCGCATTCTGCCTCTTCGGTCGGCTAAGCG
* * * *
12274671 CCCGCACGCCCATTTTGTGGGTTGGCTTAG
126 CCCGCACGCTCGTTTCGTGGGTTGGATTAG
* ** * * * *
12274701 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGCAACGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCAAGGGTTGTAGCAA--GGATCGA
* * * * * * *
12274764 CAGCACGTAGAGGGGGACTGGGCCAATCCCC-GACTTCCGCATTATGCCTTTTCGATCGGCTCAG
62 CAGCACGCAG-GGGGGAC-GGGCCGATCCCCTG-CTTGCGCATTCTGCCTCTTCGGTCGGCTAAG
* * *
12274828 CGCCCACACGCTCGTTTCGTGTGTT-GACTTAT
124 CGCCCGCACGCTCGTTTCGTGGGTTGGA-TTAG
* *
12274860 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCTAGGGTTGTAGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTAGCA--AGGATCGACA
* *
12274925 GCACGCAGGGGGGATCGGGCCGATCCCCTGCTTGCGCATTCTGCCTCTTCGGTAGGCTGAGCGCC
64 GCACGCAGGGGGGA-CGGGCCGATCCCCTGCTTGCGCATTCTGCCTCTTCGGTCGGCTAAGCGCC
* * *
12274990 TGCACGTTCGTTTCATGGGTTGGATTAG
128 CGCACGCTCGTTTCGTGGGTTGGATTAG
*
12275018 GCATACGAAGTTCATTC
1 GCATACGGAGTTCATTC
12275035 GATGTCTAAG
Statistics
Matches: 265, Mismatches: 52, Indels: 34
0.75 0.15 0.10
Matches are distributed among these distances:
155 6 0.02
157 3 0.01
158 133 0.50
159 117 0.44
160 5 0.02
161 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTAGCAAGGATCGACAGC
ACGCAGGGGGGACGGGCCGATCCCCTGCTTGCGCATTCTGCCTCTTCGGTCGGCTAAGCGCCCGC
ACGCTCGTTTCGTGGGTTGGATTAG
Found at i:12275778 original size:26 final size:26
Alignment explanation
Indices: 12275742--12275820 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
12275732 GTTGACTTAG
*
12275742 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12275768 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
12275794 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12275820 G
1 G
12275821 ATCGGACCGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12276197 original size:158 final size:159
Alignment explanation
Indices: 12276000--12276289 Score: 372
Period size: 158 Copynumber: 1.8 Consensus size: 159
12275990 CTGGATCGAG
* * * *
12276000 GGTTGTGGCAGCGGGACCGGCAGCACGTAGAGGGGGATCGGG-TCGAT-CTCCGGCTTACGCATT
1 GGTTGCGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCT-GATCCT-CGGCTTACGCATT
* * *
12276063 ATGCCTCTCCG-GCTGGCTCAGCGCCCGC-TGCTCATTTCATGGGTTGACTTAGGCATACGGAGT
64 ATGCCTCTCCGATC-GACTCAGCGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATAAGGAGT
12276126 TCATTGCCAGTTTAAGATCGGATCAGACCGAT
128 TCATTGCCAGTTTAAGATCGGATCAGACCGAT
* * * * *
12276158 GGTTGCGGCAGCAGGATCGACAGCACGCAGTGTGGGATCGGGCTGGTCCTCGGCTTACGCATTCT
1 GGTTGCGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCTGATCCTCGGCTTACGCATTAT
* * * * *
12276223 TCCTCTCCGATCGACTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCA
66 GCCTCTCCGATCGACTCAGCGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATAAGGAGTTCA
12276288 TT
131 TT
12276290 CCATGTCTAA
Statistics
Matches: 111, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
158 71 0.64
159 40 0.36
ACGTcount: A:0.17, C:0.26, G:0.32, T:0.25
Consensus pattern (159 bp):
GGTTGCGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCTGATCCTCGGCTTACGCATTAT
GCCTCTCCGATCGACTCAGCGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATAAGGAGTTCA
TTGCCAGTTTAAGATCGGATCAGACCGAT
Found at i:12276324 original size:26 final size:26
Alignment explanation
Indices: 12276274--12276326 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12276264 GTTGGCTTAG
*
12276274 GCATAAGGAGTTCATTCCATGTCTAA
1 GCATAAGGAGTTCATTCCATATCTAA
*
12276300 GCATACGGAGTTCATTCTCA-ATCTAA
1 GCATAAGGAGTTCATTC-CATATCTAA
12276326 G
1 G
12276327 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCATATCTAA
Found at i:12276652 original size:158 final size:158
Alignment explanation
Indices: 12276376--12276675 Score: 358
Period size: 158 Copynumber: 1.9 Consensus size: 158
12276366 TAGGATCAGT
* ** * * * *
12276376 AGCACGTAGGGGGGATCGGGCCGGTCCCCGACTTGCGCATTATGCCTCTTCAGTCGGTTCAGCAC
1 AGCACGTAGGGGGGACCAAGCCGGTCCCCGACTTCCACATTATGCCTCTCCAGTCGATTCAGCAC
** * *
12276441 CTGCCTGCTCGTTTCGTGGGTTGACTTATTCATACGGAGTTCATTCCTAGTCTAAG-ATCAGATC
66 CTGCCTGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCACCAG-TC
12276505 GGACCGAGGGTTGCGGTAGTAGGATTGAC
130 GGACCGAGGGTTGCGGTAGTAGGATTGAC
* * * *
12276534 AGCACGTAGGGGGGACCAAGTCGGTCCCCGACTTCCACATTCTGCCTCTCCAG-CTGATTGAGCG
1 AGCACGTAGGGGGGACCAAGCCGGTCCCCGACTTCCACATTATGCCTCTCCAGTC-GATTCAGCA
* * *
12276598 CCTGCAC-GCTCGTTT-GATGGGTTGGCTTAGGCATGCAGAGTTCATTCC-ATGTCTAAGCCCCA
65 CCTGC-CTGCTCGTTTCG-TGGGTTGACTTAGGCATACAGAGTTCATTCCTA-GTCTAAGCACCA
12276660 GTCGGACCGAGGGTTG
127 GTCGGACCGAGGGTTG
12276676 TCGCAGCAGG
Statistics
Matches: 119, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
157 3 0.03
158 112 0.94
159 4 0.03
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.26
Consensus pattern (158 bp):
AGCACGTAGGGGGGACCAAGCCGGTCCCCGACTTCCACATTATGCCTCTCCAGTCGATTCAGCAC
CTGCCTGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCACCAGTCG
GACCGAGGGTTGCGGTAGTAGGATTGAC
Found at i:12276837 original size:25 final size:26
Alignment explanation
Indices: 12276799--12276850 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
12276789 GTTGACTTAG
12276799 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12276825 GCATAC-GAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12276850 G
1 G
12276851 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12276837 original size:354 final size:343
Alignment explanation
Indices: 12276471--12277167 Score: 766
Period size: 354 Copynumber: 2.0 Consensus size: 343
12276461 TTGACTTATT
* * * * *
12276471 CATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGTAGGATTGACAG
1 CATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGACAG
** * * * * *
12276536 CACGTAGGGGGGACCAAGTCGGTCCCC-GACTTCCACATTCTGCCTCTCC-AGCTGATTGAGCGC
66 CACACAGGGGGGACCAAGCCGATCCCCTG-CTTCCACATTCTGCCTCTCCGACCAG-CTGAGCGC
* * *
12276599 CTGCAC-GCTCGTTTGATGGGTTGGCTTAGGCAT-GCAGAGTTCATTCCATGTCTAAGCCCCAG-
129 CCGCACGGCT-GTTTCATGGGTTAGCTTAGGCATAG-AGAGTTCATTCCATGTCTAAGCCCCAGC
* * **
12276661 TCGGACCGAGGGTTGTCGCAGCAGGACCAGCAGTGGGATCGACAGTATGCAGAGGGGGA-TTGGA
192 T-AGACCGAGGGTTGTCGCAGCAGGACC-G-A-T---A--G-CA-CA--CAGAGGGGGACCAGG-
*
12276725 CTA-ATCCCC-GACTTACGCATTATGCCTTTTCGA-CTGACAGAGCGCCCGCACACTCGTTTCAT
243 C-AGATCCCCAG-CTTACGCATTATGCCTTTTCGATC-GACACAGCGCCCGCACACTCGTTTCAT
12276787 GGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
305 GGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* **
12276826 CATAC-GAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCAGGATCGGTAG
1 CATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGACAG
* ** * * *
12276890 CACACAGGGGGGATCGGGCCGATCCCCTGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGTGCCC
66 CACACAGGGGGGACCAAGCCGATCCCCTGCTTCCACATTCTGCCTCTCCGACCAGCTGAGCGCCC
* **
12276955 GCACGGCTGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTTGCTAGA
131 GCACGGCTGTTTCATGGGTTAGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGCTAGA
* * *
12277020 CCGAGGGTTGTGGCAGCGGGACCGATAGCACACAGAGGGGGACCAGGCAGATCCCCAGCTTGCGC
196 CCGAGGGTTGTCGCAGCAGGACCGATAGCACACAGAGGGGGACCAGGCAGATCCCCAGCTTACGC
* * * * *
12277085 ATTATGCCTTTTCGATCGACTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCGTACGGA
261 ATTATGCCTTTTCGATCGACACAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGA
*
12277150 GTTCATTCCCAGTCTAAG
326 GTTCATCCCCAGTCTAAG
12277168 ATCAGACTGG
Statistics
Matches: 292, Mismatches: 41, Indels: 31
0.80 0.11 0.09
Matches are distributed among these distances:
341 1 0.00
342 97 0.33
343 4 0.01
344 1 0.00
345 2 0.01
346 1 0.00
348 1 0.00
351 1 0.00
352 1 0.00
353 1 0.00
354 168 0.58
355 14 0.05
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (343 bp):
CATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGACAG
CACACAGGGGGGACCAAGCCGATCCCCTGCTTCCACATTCTGCCTCTCCGACCAGCTGAGCGCCC
GCACGGCTGTTTCATGGGTTAGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGCTAGA
CCGAGGGTTGTCGCAGCAGGACCGATAGCACACAGAGGGGGACCAGGCAGATCCCCAGCTTACGC
ATTATGCCTTTTCGATCGACACAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGA
GTTCATCCCCAGTCTAAG
Found at i:12277285 original size:158 final size:158
Alignment explanation
Indices: 12276825--12277325 Score: 516
Period size: 158 Copynumber: 3.2 Consensus size: 158
12276815 CCCAGTCTAA
* *
12276825 GCATAC-GAGTTCATTCC-TAGTCTAAGATCGGACCAGACCGAGGGTT--ACGGTAGCAGGATCG
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACTAGACCGAGGGTTGGA-GG-AGCAGGATCG
* * * * * * *
12276886 GTAGCACACAGGGGGGATCGGGCCGATCCCCTGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGT
63 ATAGCACACAGGGGGGACCAGGCAGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCAACTGAGC
*
12276951 GCCCGCACGGCT-GTTTCATGGGTT-AGCTTAG
128 GCCCGCAC-GCTCGTTTCGTGGGTTGA-CTTAG
* ** * * * *
12276982 GCATAGGGAGTTCATTCCATGTCTAAGCCCTTG-CTAGACCGAGGGTTGTG-GCAGCGGGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAGATC-AGACTAGACCGAGGGTTG-GAGGAGCAGGATCGA
* * * * * *
12277045 TAGCACACAGAGGGGGACCAGGCAGATCCCCAGCTTGCGCATTATGCCTTTTCGATCGACTCAGC
64 TAGCACACAG-GGGGGACCAGGCAGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCAACTGAGC
*
12277110 GCCCGCACGCTCGTTTCGTGGGTTGACTTAT
128 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
12277141 GCGTACGGAGTTCATTCCCA-GTCTAAGATCAGACTGGACCGAGGGTTGGAGGAGCAGGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACTAGACCGAGGGTTGGAGGAGCAGGATCGAT
*** * *
12277205 AGCACACAGGGGGGACCAGATTGATCCCCAGCTTGTGCATTCTACCTCTCCGACCAACTGAGCGC
65 AGCACACAGGGGGGACCAGGCAGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCAACTGAGCGC
* * * *
12277270 CCGCGCGCTCGTTTCGTGGTTTGGCCTAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAG
*
12277299 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
12277326 CATACGGAGT
Statistics
Matches: 279, Mismatches: 52, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
157 8 0.03
158 145 0.52
159 122 0.44
160 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACTAGACCGAGGGTTGGAGGAGCAGGATCGATA
GCACACAGGGGGGACCAGGCAGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCAACTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:12277348 original size:26 final size:26
Alignment explanation
Indices: 12277299--12277350 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12277289 TTTGGCCTAG
*
12277299 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATCCCATGTCTAA
*
12277325 GCATACGGAGTTCATCCCCA-GTCTAA
1 GCATACGAAGTTCAT-CCCATGTCTAA
12277351 CATTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCATGTCTAA
Found at i:12277519 original size:17 final size:16
Alignment explanation
Indices: 12277466--12277513 Score: 73
Period size: 16 Copynumber: 3.1 Consensus size: 16
12277456 CCTAACCGAT
12277466 GGCG-TTGGGGGTTCC
1 GGCGATTGGGGGTTCC
*
12277481 GACGATTGGGGGTTCC
1 GGCGATTGGGGGTTCC
12277497 GGCGATTGGGGG-TCC
1 GGCGATTGGGGGTTCC
12277512 GG
1 GG
12277514 GGCGATGTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.06, C:0.19, G:0.52, T:0.23
Consensus pattern (16 bp):
GGCGATTGGGGGTTCC
Found at i:12278085 original size:26 final size:26
Alignment explanation
Indices: 12278049--12278101 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12278039 GTTGACTTAG
*
12278049 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
12278075 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12278101 G
1 G
12278102 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12278552 original size:158 final size:157
Alignment explanation
Indices: 12278075--12278575 Score: 448
Period size: 159 Copynumber: 3.2 Consensus size: 157
12278065 CCCAGTCTAA
* *
12278075 GCATACAGAGTTCATTCC-TAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGC
1 GCATACAGAGTTCATTCCAT-GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* ** * * * * **
12278139 AGC-ACGTAGGGTGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTTTCCAGCCAGCTGAGCAC
65 AGCAACGTAGGGGGACTGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCAC
12278203 CTGCACATC-CGTTTCATGGGTTGGCTTAG
130 C--CACATCTCGTTTCATGGGTTGGCTTAG
** * ** * * * *
12278232 GCATAGGGAGTTCATTCGATGTCT-A-ATCCCCATTCGGACCGAGGGTTGTGGCAGC-GAGACCG
1 GCATACAGAGTTCATTCCATGTCTAAGAT-CAGA-CCAGACCGAGGGTTGCGGCAGCAG-GATCG
* * * * * *
12278294 ACAGCATGCAG-AGAGGGA-TCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTTGACTC
63 ACAGCA-AC-GTAGGGGGACT-GGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTG
* * *
12278357 AGCCCCCGCACAT-TCGTTTCATGGGTTGACTTGG
125 AG-CACC-CACATCTCGTTTCATGGGTTGGCTTAG
** **
12278391 GCATACAGAGTTCATTCCCA-GTCTAAGATTGGACCAGACCGAGGGTTGCGATAGCAGGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * *
12278455 AGCAACGTGGGGGGACTGGGTCGGTCCCTGGCTTGCGCATTCTGCCTCTCTGGCTGGCTGAGCGC
65 AGCAACGTAGGGGGACTGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCAC
12278520 CCATTC-TCTCGTTTCATGGGTTGGCTTAG
130 CCA--CATCTCGTTTCATGGGTTGGCTTAG
* *
12278549 GCATACGGAGTTGATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
12278576 CATACGGAGT
Statistics
Matches: 269, Mismatches: 55, Indels: 39
0.74 0.15 0.11
Matches are distributed among these distances:
155 2 0.01
156 6 0.02
157 53 0.20
158 87 0.32
159 110 0.41
160 9 0.03
161 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCAACGTAGGGGGACTGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCACC
CACATCTCGTTTCATGGGTTGGCTTAG
Found at i:12278585 original size:26 final size:26
Alignment explanation
Indices: 12278549--12278601 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12278539 GTTGGCTTAG
*
12278549 GCATACGGAGTTGATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12278575 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12278601 G
1 G
12278602 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12278949 original size:26 final size:26
Alignment explanation
Indices: 12278915--12278967 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
12278905 GTTGACTTAG
*
12278915 GCATGCGGACTTCATCCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
* * * *
12278941 GCATACGGAGTTGATTCCCTGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
12278967 G
1 G
12278968 ATCAAACCGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCAGTCTAA
Found at i:12279445 original size:26 final size:26
Alignment explanation
Indices: 12279416--12279468 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12279406 GTTGGCTTAG
*
12279416 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12279442 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12279468 G
1 G
12279469 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12280181 original size:26 final size:26
Alignment explanation
Indices: 12280124--12280175 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12280114 CATGGGTTGA
*
12280124 CTTAGGCATACGGAGTTCATCCCCAG
1 CTTAAGCATACGGAGTTCATCCCCAG
* *
12280150 CTTAAGCATATGGAGTTCATTCCCAG
1 CTTAAGCATACGGAGTTCATCCCCAG
12280176 TCTAAGATTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAAGCATACGGAGTTCATCCCCAG
Found at i:12280470 original size:159 final size:157
Alignment explanation
Indices: 12280191--12280485 Score: 369
Period size: 159 Copynumber: 1.9 Consensus size: 157
12280181 GATTGGACCA
* * * * * *
12280191 GACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGACTGGGCCGATCCCTGGCTTGCGT
1 GACCGAGGGTTGCGGCAGCAAGACCGGTAGCACGCAGGGGGACCGGGCCAATCCCTAGCTTGCGC
* * * * * * **
12280256 ATTGTGCCTCTCTGACCGACTGAGCGCCCGGACGCCCGTTTCATCGGTTGGCTTAGGCATAGGGA
66 ATTATGCCTCTCCGACCGACTCAGCGCCCGCACGCCCGTTCCATCGGTTGACTTAGGCATACAGA
12280321 GTTCATGCCATGTCTAAGCCCCAATCG
131 GTTCATGCCATGTCTAAGCCCCAATCG
*
12280348 GACCGAGGGTTGTGGCAGCAAGACCGGCT-GCACGCAGAGGGGGACCGGGCCAAT-CCTCAGCTT
1 GACCGAGGGTTGCGGCAGCAAGACCGG-TAGCACGC--AGGGGGACCGGGCCAATCCCT-AGCTT
** * *
12280411 GCGCATTATGCCTCTCCGACCGACTCAGCGCCCGCACGCTTGTTCCGTGGGTTGACTTAGGCATA
62 GCGCATTATGCCTCTCCGACCGACTCAGCGCCCGCACGCCCGTTCCATCGGTTGACTTAGGCATA
12280476 CAGAGTTCAT
127 CAGAGTTCAT
12280486 CCCCAGTTTA
Statistics
Matches: 115, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
157 30 0.26
158 4 0.03
159 81 0.70
ACGTcount: A:0.18, C:0.29, G:0.33, T:0.20
Consensus pattern (157 bp):
GACCGAGGGTTGCGGCAGCAAGACCGGTAGCACGCAGGGGGACCGGGCCAATCCCTAGCTTGCGC
ATTATGCCTCTCCGACCGACTCAGCGCCCGCACGCCCGTTCCATCGGTTGACTTAGGCATACAGA
GTTCATGCCATGTCTAAGCCCCAATCG
Found at i:12286952 original size:26 final size:26
Alignment explanation
Indices: 12286916--12286968 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12286906 GTTGGCTTAG
12286916 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12286942 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12286968 G
1 G
12286969 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12287156 original size:26 final size:26
Alignment explanation
Indices: 12287126--12287178 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12287116 GTTGACTTAG
*
12287126 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
12287152 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12287178 G
1 G
12287179 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12287505 original size:26 final size:26
Alignment explanation
Indices: 12287469--12287521 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12287459 GTTGGCTTAG
*
12287469 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12287495 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12287521 G
1 G
12287522 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12288229 original size:25 final size:26
Alignment explanation
Indices: 12288193--12288244 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
12288183 GTTGACTTAG
12288193 GCATACGAAGTTCA-TCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
12288218 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12288244 G
1 G
12288245 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12288571 original size:26 final size:26
Alignment explanation
Indices: 12288535--12288587 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12288525 GTTGGCTTAG
12288535 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
* *
12288561 GCATATAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12288587 G
1 G
12288588 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12289292 original size:25 final size:26
Alignment explanation
Indices: 12289258--12289309 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
12289248 GTTGATTTAG
12289258 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12289283 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12289309 G
1 G
12289310 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12289618 original size:26 final size:26
Alignment explanation
Indices: 12289588--12289640 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12289578 GTTCGCTTAG
12289588 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12289614 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12289640 G
1 G
12289641 ATCGTACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12291557 original size:26 final size:26
Alignment explanation
Indices: 12291527--12291579 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12291517 GTTGACTTAG
*
12291527 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
12291553 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12291579 G
1 G
12291580 ATCAGATAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12291917 original size:159 final size:158
Alignment explanation
Indices: 12291628--12292055 Score: 443
Period size: 159 Copynumber: 2.7 Consensus size: 158
12291618 GTATGTAGGA
* * * * * * *
12291628 GGGACCGGATCGATCCTCGGCTTACGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGTACGCCCG
1 GGGACCGGGTCGATCCCCGGCTTATGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCG
* ** * * *
12291693 TTTCATGGGTTGGCTTAGGCATAGGGAGTTGATTCCATGTCTTAGCCCCAGCTAGACCGAGGGTT
66 TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
* *
12291758 GTGGTAATGGGACCAACAGCACGCAGAGG
131 GCGGTAATAGGACCAACAGCACGCAGA-G
* * * * *
12291787 GGGACCGGGTTGATCCCCGGCTTATGCATTATGCCTCTCCGACCGGCTCAACGCCCACATGCTCG
1 GGGACCGGGTCGATCCCCGGCTTATGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCG
** * *
12291852 TTTCATGGGTTGACTTAGGCATACAGAGTTCATTTCCA-GTCTAAG-ATCGGACCGGACCGAGGG
66 TTTCATGGGTTGACTTAGGCATACAGAGTTCA-TTCCATGTCTAAGCCCCAG-CCAGACCGAGGG
* *
12291915 TTGCGGTAATAGGATCGACAGCACGCAGAG
129 TTGCGGTAATAGGACCAACAGCACGCAGAG
** * * ** **
12291945 GGGACCTCGTCG-GCCCCTGGCTTGCTG-ATTATGCCTCTCCGGTCAACTGAGCGCCCGCACGCT
1 GGGACCGGGTCGATCCCC-GGCTT-ATGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCT
**
12292008 CGTTTTGTGGGTT-AGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
64 CGTTTCATGGGTTGA-CTTAGGCATACAGAGTTCATTCCATGTCTAAGC
12292056 ATACGGAGTT
Statistics
Matches: 221, Mismatches: 41, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
157 10 0.05
158 82 0.37
159 124 0.56
160 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
GGGACCGGGTCGATCCCCGGCTTATGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCG
TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
GCGGTAATAGGACCAACAGCACGCAGAG
Found at i:12292027 original size:158 final size:159
Alignment explanation
Indices: 12291553--12292054 Score: 383
Period size: 158 Copynumber: 3.2 Consensus size: 159
12291543 CCTAGTCTAA
* ** * * * * * * *
12291553 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGATAGGATCGAGGGTTACAGCAGTAGGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAATAGGACCAAC
* * * * * * * * *** * *
12291617 AGTATGTAG-GAGGGACCG-GATCGATCCTCGGCTTACGCATTCTGCCTCTCCGACCGGTTGAGC
65 AGCACGCAGAGGGGGACCGCG-TCGAGCCCCGGCTTATGCATTATGCCTCTCCGACCAACTCAAC
** * *
12291680 GCCCGTACGCCCGTTTCATGGGTTGGCTTAG
129 GCCCACACGCTCGTTTCATGGGTTGACTTAG
** * * * ** ** * *
12291711 GCATAGGGAGTTGATTCCATGTCTTAG-CCCCAGCTAGACCGAGGGTTGTGGTAATGGGACCAAC
1 GCATACAGAGTTCATTCCATGTCTAAGATCGGA-CCGGACCGAGGGTTGCGGTAATAGGACCAAC
* * * **
12291775 AGCACGCAGAGGGGGACCGGGTTGATCCCCGGCTTATGCATTATGCCTCTCCGACCGGCTCAACG
65 AGCACGCAGAGGGGGACCGCGTCGAGCCCCGGCTTATGCATTATGCCTCTCCGACCAACTCAACG
*
12291840 CCCACATGCTCGTTTCATGGGTTGACTTAG
130 CCCACACGCTCGTTTCATGGGTTGACTTAG
* *
12291870 GCATACAGAGTTCATTTCCA-GTCTAAGATCGGACCGGACCGAGGGTTGCGGTAATAGGATCGAC
1 GCATACAGAGTTCA-TTCCATGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAATAGGACCAAC
* * ** * *
12291934 AGCACGCAGA-GGGGACCTCGTCG-GCCCCTGGCTTGCTG-ATTATGCCTCTCCGGTCAACTGAG
65 AGCACGCAGAGGGGGACCGCGTCGAGCCCC-GGCTT-ATGCATTATGCCTCTCCGACCAACTCAA
* **
12291996 CGCCCGCACGCTCGTTTTGTGGGTT-AGCTTAG
128 CGCCCACACGCTCGTTTCATGGGTTGA-CTTAG
12292028 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
12292055 CATACGGAGT
Statistics
Matches: 271, Mismatches: 63, Indels: 20
0.77 0.18 0.06
Matches are distributed among these distances:
157 15 0.06
158 124 0.46
159 124 0.46
160 8 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAATAGGACCAACA
GCACGCAGAGGGGGACCGCGTCGAGCCCCGGCTTATGCATTATGCCTCTCCGACCAACTCAACGC
CCACACGCTCGTTTCATGGGTTGACTTAG
Found at i:12292064 original size:26 final size:26
Alignment explanation
Indices: 12292028--12292080 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12292018 GTTAGCTTAG
12292028 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
* *
12292054 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12292080 G
1 G
12292081 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12292448 original size:26 final size:26
Alignment explanation
Indices: 12292408--12292460 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12292398 GTTGACTTTG
12292408 GCATATGAAGCTCATCCCCAGTCTAA
1 GCATATGAAGCTCATCCCCAGTCTAA
* *
12292434 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGCTCATCCCCAGTCTAA
12292460 G
1 G
12292461 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATATGAAGCTCATCCCCAGTCTAA
Found at i:12292899 original size:158 final size:156
Alignment explanation
Indices: 12292434--12292933 Score: 491
Period size: 159 Copynumber: 3.2 Consensus size: 156
12292424 CCCAGTCTAA
* * *
12292434 GCATATGAAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTACGGTAGCAGGATCGACA
1 GCATATGAAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * ** *
12292499 GCACGTA-GGGGGACCGAGCCGATCCCTGGCTTCCACATTCTGTGTCTCCGACCGACTGAGCGCC
66 GCACGTAGGGGGGATCGGGCCGATCCCTGACTTACACATTCTGCCTCTCCG-GCGACTGAGCGCC
* * *
12292563 TGCATGCCCATTTCGTGGGTTGGCTTAG
130 -GCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * ** * * * * * *
12292591 CCATAGGGAGTTTATT-CCATGTCTAAGCCCCAGCCGGACCTAGGGTTGTGGCAGCGGGATCGGC
1 GCATATGAAGTTCATTCCCA-GTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * ** *
12292655 AGCACGCAGAGGGGGATCGGGTCGATCCCTGACTTACACAATATGCCTCTCTGGCTGACACAACG
65 AGCACGTAG-GGGGGATCGGGCCGATCCCTGACTTACACATTCTGCCTCTCCGGC-GACTGAGCG
* *
12292720 CCCGAACGCTCGTTTCGTGGGTTGACTTAG
128 -CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * *
12292750 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGTAGGATTGATA
1 GCATATGAAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * *
12292815 GCACGTAGGGGGGATCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGTC
66 GCACGTAGGGGGGATCGGGCCGATCCCTGACTTACACATTCTGCCTCTCCGG-CGACTGAGCG-C
*
12292880 CGCACGCTCGTTTAGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
12292908 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
12292934 CCATATGGAG
Statistics
Matches: 267, Mismatches: 69, Indels: 13
0.77 0.20 0.04
Matches are distributed among these distances:
156 3 0.01
157 52 0.19
158 95 0.36
159 112 0.42
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATATGAAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGTAGGGGGGATCGGGCCGATCCCTGACTTACACATTCTGCCTCTCCGGCGACTGAGCGCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12292945 original size:26 final size:26
Alignment explanation
Indices: 12292909--12292959 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12292899 TTGGCTTAGG
12292909 CATATGAAGTTCATTCCCAGTCTAAC
1 CATATGAAGTTCATTCCCAGTCTAAC
* *
12292935 CATATGGAGTTCATTCTCAGTCTAA
1 CATATGAAGTTCATTCCCAGTCTAA
12292960 GATCAGACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (26 bp):
CATATGAAGTTCATTCCCAGTCTAAC
Found at i:12294019 original size:26 final size:26
Alignment explanation
Indices: 12293990--12294039 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
12293980 GGCTTAGGCT
12293990 TACGAAGTTCATT-CCATGTCTAAGCA
1 TACGAAGTTCATTCCCA-GTCTAAGCA
*
12294016 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
12294040 ATCGGACCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:12294058 original size:196 final size:195
Alignment explanation
Indices: 12293685--12294093 Score: 484
Period size: 196 Copynumber: 2.1 Consensus size: 195
12293675 TGGGTTACGA
* * *
12293685 CAGCAGGATCGACAGCATGTAGGGGGACCAGGCCGATCCCCGGCTGACGTATTCTACCTCTCTGA
1 CAGCAGGATCGACAGCACGCAGGGGGACCAGGCCGATCCCCGGCTGACGCATTCTACCTCTCTGA
* * * *
12293750 TCGGCTGAGCGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCACTCCATGTCT
66 TCAGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCACTCCATGTCT
* * * * **
12293815 AAGCATACGGAGTTCATTCCCAATTTAAGATTGAACTGAATCGAGGGTTGTGACAGCAGGACCAG
131 AAGCATACGGAGTTCATTCCCAATCTAAGATGGAACAGAACCGAGGGTTACGACAGCAGGACCAG
* * * *
12293880 CAGCAGGATCGACAGCACGCAGGAGGGATC-GAGCCGATCCCTGGCTTG-TGCATTCTGCCTCT-
1 CAGCAGGATCGACAGCACGCAGG-GGGACCAG-GCCGATCCCCGGC-TGACGCATTCTACCTCTC
* * * * * *
12293942 TCGATTAGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCTTACGAAGTTCATTCCAT
63 T-GATCAGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCACTCCAT
* * ** *
12294007 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTACGGGAGTAGG
127 GTCTAAGCATACGGAGTTCATTCCCAATCTAAGAT-GGAACAGAACCGAGGGTTACGACAGCAGG
12294071 ACCAG
191 ACCAG
*
12294076 CAGCAGGATCGATAGCAC
1 CAGCAGGATCGACAGCAC
12294094 ATAGGGGGGA
Statistics
Matches: 180, Mismatches: 29, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
195 23 0.13
196 151 0.84
197 6 0.03
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (195 bp):
CAGCAGGATCGACAGCACGCAGGGGGACCAGGCCGATCCCCGGCTGACGCATTCTACCTCTCTGA
TCAGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCACTCCATGTCT
AAGCATACGGAGTTCATTCCCAATCTAAGATGGAACAGAACCGAGGGTTACGACAGCAGGACCAG
Found at i:12294132 original size:196 final size:196
Alignment explanation
Indices: 12293753--12294137 Score: 477
Period size: 196 Copynumber: 2.0 Consensus size: 196
12293743 TCTCTGATCG
* * *
12293753 GCTGAGCGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCACTCCATGTCTAAG
1 GCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCACTCCATGTCTAAG
* * * * **
12293818 CATACGGAGTTCATTCCCAATTTAAGATTGAACTGAATCGAGGGTTGTGACAGCAGGACCAGCAG
66 CATACGGAGTTCATTCCCAATCTAAGATGGAACAGAACCGAGGGTTACGACAGCAGGACCAGCAG
* * * * **
12293883 CAGGATCGACAGCACGCAGGAGGGATCGAGCCGATCCCTGGCTTGTGCATTCTGCCTCTTCGATT
131 CAGGATCGACAGCACACAGGAGGGATAGAGCCAATCCCAGGCTTGCACATTCTGCCTCTTCGATT
12293948 A
196 A
* * * * *
12293949 GCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCTTACGAAGTTCATTCCATGTCTAAG
1 GCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCACTCCATGTCTAAG
* * ** *
12294014 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTACGGGAGTAGGACCAGCA
66 CATACGGAGTTCATTCCCAATCTAAGAT-GGAACAGAACCGAGGGTTACGACAGCAGGACCAGCA
* * * *
12294078 GCAGGATCGATAGCACATAGGGGGGACTAG-GCCAATCTCAGGCTTGCACATTCTGCCTCT
130 GCAGGATCGACAGCACACAGGAGGGA-TAGAGCCAATCCCAGGCTTGCACATTCTGCCTCT
12294138 CCGACCGACT
Statistics
Matches: 158, Mismatches: 29, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
196 152 0.96
197 6 0.04
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (196 bp):
GCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCACTCCATGTCTAAG
CATACGGAGTTCATTCCCAATCTAAGATGGAACAGAACCGAGGGTTACGACAGCAGGACCAGCAG
CAGGATCGACAGCACACAGGAGGGATAGAGCCAATCCCAGGCTTGCACATTCTGCCTCTTCGATT
A
Found at i:12295295 original size:26 final size:26
Alignment explanation
Indices: 12295259--12295311 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12295249 GTTCACTTAC
*
12295259 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
12295285 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12295311 G
1 G
12295312 ATCAGACAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12296378 original size:25 final size:26
Alignment explanation
Indices: 12296341--12296392 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
12296331 GTTGACTTAG
*
12296341 GCATACGGAGTTCA-TCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12296366 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12296392 G
1 G
12296393 ATAAGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12296772 original size:159 final size:158
Alignment explanation
Indices: 12296366--12296796 Score: 400
Period size: 159 Copynumber: 2.7 Consensus size: 158
12296356 CCTAGTCTAA
* * * * *
12296366 GCATACGGGGTTCATTCCCAGTCTAAGATAAGACTAGATCGAGGGTTGCGACAGCAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCG-CAGCAGGATCGACA
** * * *
12296431 GCACGC-GAGGCAGACCGGGCCGAT-CCTCGGCTTACGCATTCTGCCTCTCTGACTGGCTGAGCG
65 GCACGCAGAGGGGGACCGGGCCGATCCCTCGGCTTACGCATTCTGCCTCTCGGACTGGCTCAACG
* *
12296494 CCCACACGTCCGTTTCTTGGGTTGGCTTG
130 CCCACACGTCCGTTTCGTGGGTTGACTTG
* * * * *
12296523 GCATAAGGAGTTCATT-CCATGTCTAAG-TCCTA-ACCGGAAT-GAGGGTTGTGGCAACGGGA-C
1 GCATACGGAGTTCATTCCCA-GTCTAAGAT-C-AGACCAG-ATCGAGGGTTG-CGCAGCAGGATC
* * *
12296583 TGATAGCACACAGAGGGGGACCGGGCCGATCCCT-GGCTTACGCATTAC-GCCTCTTCGGTC-GG
61 -GACAGCACGCAGAGGGGGACCGGGCCGATCCCTCGGCTTACGCATT-CTGCCTC-TCGGACTGG
* *
12296645 TTCAACGCCCACACG-CTCGTTTCGTGGGTTGACTTAT
123 CTCAACGCCCACACGTC-CGTTTCGTGGGTTGACTT-G
* *
12296682 GCATACTGAGTTCATTCCCAGTCTATGATCAGACCAGATCGAGGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGC-GCAGCAGGATCGACA
* * ** * *
12296747 GCACGCAGGGGGGGACCGGGTCGATCCC-CAACTTGCGCATTCTACCTCTC
65 GCACGCAGAGGGGGACCGGGCCGATCCCTCGGCTTACGCATTCTGCCTCTC
12296797 CAGCCGGCTA
Statistics
Matches: 217, Mismatches: 37, Indels: 39
0.74 0.13 0.13
Matches are distributed among these distances:
156 4 0.02
157 46 0.21
158 73 0.34
159 89 0.41
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGCAGCAGGATCGACAG
CACGCAGAGGGGGACCGGGCCGATCCCTCGGCTTACGCATTCTGCCTCTCGGACTGGCTCAACGC
CCACACGTCCGTTTCGTGGGTTGACTTG
Found at i:12297071 original size:26 final size:26
Alignment explanation
Indices: 12297020--12297072 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12297010 GTTGACTTAG
**
12297020 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
**
12297046 GCATACGGAGTTCATTTCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
12297072 G
1 G
12297073 ATCGGAATGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:12297410 original size:681 final size:671
Alignment explanation
Indices: 12296058--12297394 Score: 1527
Period size: 681 Copynumber: 2.0 Consensus size: 671
12296048 GCAGGATCGA
* * * *
12296058 CAGCACGCAGGATC-AGTAGCACGTAGGAGGGGACCGGGCTGATCCTCGACTTACGCATTCTACC
1 CAGCA-GCAGGATCGAGCAGCACGCAGGAGGGGACCGGGCTGATCCCCAACTTACGCATTCTACC
* ** * *
12296122 TCTCCAGCCGGCTGAGCTCCCGCACACTCTTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTC
65 TCTCCAGCCGGCTAAGCAACCGCACACTCATTTCATTGG-TGGCTTAGGCATACAGAGTTCATTC
* *
12296187 CATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGGCAGCAGGACCGACAGCAGGATCGACAGAACG
129 CATGTCTAAGCCCCAACCAGACCGAAGGTTGTGGCAGCAGGACCGACAGCAGGATCGACAGAACG
* * *
12296252 TAAAAAGGGATCAGGCTGATCCCCGACTTATGGATTATGCCTCTCCGGCCAGCTGAGTGCCCGCA
194 TAAAAAGGGACCAGGCTGATCCCCGACTTATGGATTATGCCTCTCCAGCCAGCTGAGTGCCCACA
* * * *
12296317 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCTAGTCTAAGCATACGGGGTTCATT
259 CACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACGGAGTTCATT
* * * * *
12296382 CCCAGTCTAAGATAAGACTAGATCGAGGGTTGCGACAGCAGGATTGGCAGCACGCGAGGCAGACC
324 CCCAGCCTAAGATAAGAATAGATCGAGGCTTGCGACAGCAGAATTGGCAGCACGCAAGGCAGACC
* * * * * *
12296447 GGGCCGATCCTCGGCTTACGCATTCTGCCTCTCTGACTGGCTGAGCGCCCACACGTCCGTTTCTT
389 GAGCCAATCCTCGACTTACGCATTCTACCTCTCTGACTGGCTGAGCGCCCACACGCCCGTTTCAT
* *
12296512 GGGTTGGCTTGGCATAAGGAGTTCATTCCATGTCTAAGTCCTAACCGGAATGAGGGTTGTGGCAA
454 GGGTTGGCTTGGCATAAGGAGTTCATTCCATGTCTAAGCCCTAACCGGAATGAGGGTTATGGCAA
* * **
12296577 CGGGACTGATAGCACACAGAGGGGGACCGGGCCGATCCCTGGCTTACGCATTACGCCTCTTCGGT
519 CAGGACAGATAGCACACAGAGGGGGACCGGGCCGATCCCTGGCTTACGCATTACGCCTCTTCGAC
* * *
12296642 CGGTTCAACGCCCACACGCTCGTTTCGTGGGTTGACTTATGCATACTGAGTTCATTCCCAGTCTA
584 CGGTTCAACACCCACACGCTCGTTTCATGGGTTGACATATGCATACTGAGTTCATTCCCAGTCTA
*
12296707 TGATCAGACCAGATCGAGGGTTG
649 AGATCAGACCAGATCGAGGGTTG
* *
12296730 CAGCAGCAGGATCGA-CAGCACGCAGGGGGGGACCGGG-TCGATCCCCAACTTGCGCATTCTACC
1 CAGCAGCAGGATCGAGCAGCACGCAGGAGGGGACCGGGCT-GATCCCCAACTTACGCATTCTACC
* *
12296793 TCTCCAGCCGGCTAAGCAACCGCACACTCATTTCA-T-G-GG-TTGGGCATACAGAGTTCATTGC
65 TCTCCAGCCGGCTAAGCAACCGCACACTCATTTCATTGGTGGCTTAGGCATACAGAGTTCATTCC
* ** * ** * *
12296854 ATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCAGGACCGGGAGCGGGATCGGTAGCATGT
130 ATGTCTAAGCCCCAACCAGACCGAAGGTTGTGGCAGCAGGACCGACAGCAGGATCGACAGAACGT
* * * * * * *
12296919 AGAGAGGGACCGGGCTGATCCCTGACTTGCACATTATGGCTCTTCGGTCGGCCTCTCTAGCCGGC
195 AAAAAGGGACCAGGCTGATCCC---C--G-AC-TTATGG--ATT--AT--GCCTCTCCAGCCAGC
* *
12296984 TGAGTGCCCACACACTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCATTCTAAGCA
247 TGAGTGCCCACACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCA
* ** * *
12297049 TACGGAGTTCATTTCCAGCCTAAGATCGGAATGGATCGAGGCTTGCGACAGCAGAATTTGCAGCA
311 TACGGAGTTCATTCCCAGCCTAAGATAAGAATAGATCGAGGCTTGCGACAGCAGAATTGGCAGCA
* * * * * *
12297114 CGCAAAGG-GGACCGAGCTAATGCC-CGACTTGCGCATTCTACCT-TTTCGA-TCGGTTGAGGGC
376 CGC-AAGGCAGACCGAGCCAAT-CCTCGACTTACGCATTCTACCTCTCT-GACT-GGCTGAGCGC
* * *
12297175 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCG
437 CCACACGCCCGTTTCATGGGTTGGCTT-GGCATAAGGAGTTCATTCCATGTCTAAGCCCTAACCG
** *** * * *
12297240 G-ATCGAGGGTTATGGCAGTAGGACCAG-TAGCATGTAGAGGGGGATCGGGCTGAT-CCTCGGTT
501 GAAT-GAGGGTTATGGCAACAGGA-CAGATAGCACACAGAGGGGGACCGGGCCGATCCCT-GGCT
* * ** * *
12297302 TACGCATTATGCCTCTTCGACCGGCTT-AGCACCCGTATGCTCGTTTCATGGGTTTACATATGCA
563 TACGCATTACGCCTCTTCGACCGG-TTCAACACCCACACGCTCGTTTCATGGGTTGACATATGCA
12297366 TA-TAGAGTTCATTCCCAGTCTAAGATCAG
627 TACT-GAGTTCATTCCCAGTCTAAGATCAG
12297395 GCCGAATTGA
Statistics
Matches: 551, Mismatches: 88, Indels: 43
0.81 0.13 0.06
Matches are distributed among these distances:
666 92 0.17
667 2 0.00
669 2 0.00
670 2 0.00
671 80 0.15
672 8 0.01
673 6 0.01
675 2 0.00
677 1 0.00
679 62 0.11
680 134 0.24
681 156 0.28
682 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (671 bp):
CAGCAGCAGGATCGAGCAGCACGCAGGAGGGGACCGGGCTGATCCCCAACTTACGCATTCTACCT
CTCCAGCCGGCTAAGCAACCGCACACTCATTTCATTGGTGGCTTAGGCATACAGAGTTCATTCCA
TGTCTAAGCCCCAACCAGACCGAAGGTTGTGGCAGCAGGACCGACAGCAGGATCGACAGAACGTA
AAAAGGGACCAGGCTGATCCCCGACTTATGGATTATGCCTCTCCAGCCAGCTGAGTGCCCACACA
CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACGGAGTTCATTCC
CAGCCTAAGATAAGAATAGATCGAGGCTTGCGACAGCAGAATTGGCAGCACGCAAGGCAGACCGA
GCCAATCCTCGACTTACGCATTCTACCTCTCTGACTGGCTGAGCGCCCACACGCCCGTTTCATGG
GTTGGCTTGGCATAAGGAGTTCATTCCATGTCTAAGCCCTAACCGGAATGAGGGTTATGGCAACA
GGACAGATAGCACACAGAGGGGGACCGGGCCGATCCCTGGCTTACGCATTACGCCTCTTCGACCG
GTTCAACACCCACACGCTCGTTTCATGGGTTGACATATGCATACTGAGTTCATTCCCAGTCTAAG
ATCAGACCAGATCGAGGGTTG
Found at i:12297454 original size:159 final size:157
Alignment explanation
Indices: 12297291--12297673 Score: 371
Period size: 159 Copynumber: 2.4 Consensus size: 157
12297281 GGATCGGGCT
* * * *
12297291 GATCCTCGGTTTACGCATTATGCCTCTTCGACCGGCTTAGCACCCGTATGCTCGTTTCATGGGTT
1 GATCC-CGGCTTACGCATTATGCCTCTTCGACCGGCTTAGCGCCCGCACGCTCGTTTCATGGGTT
* * ** * *
12297356 TACATATGCATATAGA-GTTCATTCCCAGTCTAAGATCAGGCCGAATTGAGGGTTGTGGCAGTAG
65 GACATATGCATA-AGATGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGACAGTAA
*
12297420 GATCGGTAG-ACTGCAAGGGGGAACCGAG-C
129 GATCGATAGCA-TGC-AGGGGGAACCGAGTC
* * * * * * * * *
12297449 GGATCCCTGGCTTGCGTATTCTACCTC-TCTGACTGGCTGAGTGCCTGGACGCTCGTTTCATGGG
1 -GATCCC-GGCTTACGCATTATGCCTCTTC-GACCGGCTTAGCGCCCGCACGCTCGTTTCATGGG
* * * * *
12297513 TTGACTTATGCATACGATGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGATAGTA
63 TTGACATATGCATAAGATGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGACAGTA
* *
12297578 AGATTGATAGCATGCAGGGGGGACCGAGTC
128 AGATCGATAGCATGCAGGGGGAACCGAGTC
* * * *
12297608 GATCCCCGGCTTACGCATTTTGCCTTTTCGATCGG-TTGAGCGCCCGCACGCTCGTTTCGTGGGT
1 GAT-CCCGGCTTACGCATTATGCCTCTTCGACCGGCTT-AGCGCCCGCACGCTCGTTTCATGGGT
12297672 TG
64 TG
12297674 GCTTAGGCAT
Statistics
Matches: 178, Mismatches: 38, Indels: 17
0.76 0.16 0.07
Matches are distributed among these distances:
157 1 0.01
158 62 0.35
159 114 0.64
160 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.29, T:0.28
Consensus pattern (157 bp):
GATCCCGGCTTACGCATTATGCCTCTTCGACCGGCTTAGCGCCCGCACGCTCGTTTCATGGGTTG
ACATATGCATAAGATGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGACAGTAAGA
TCGATAGCATGCAGGGGGAACCGAGTC
Found at i:12298404 original size:158 final size:159
Alignment explanation
Indices: 12297999--12298408 Score: 418
Period size: 158 Copynumber: 2.6 Consensus size: 159
12297989 CTGATCCTTG
*
12297999 GCTTGCGCATTCTGCCT-TTCCGGCCGACTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAG
1 GCTTGCGCATTCTGCCTCTT-CGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * ***
12298063 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCGACA
65 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACAGACCAAGGGTTGCAACAGCAGGACCGACA
* * * **
12298128 GTACAGAAAGGGGGATCGGGCCGATCTCTG
130 GAACAGAAAGGGGGATCAGGCCGATCCCCA
* * * * * * *
12298158 GCTTGCGCATTATGCCTC-TCAGGCTGGCTCAGCACCCGCACGCTCATTTTGTGGGTTGACTTAG
1 GCTTGCGCATTCTGCCTCTTC-GGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * * * * *
12298222 GCATATAGAGTTCATTCCCA-GTCTATG-ATCGGACAGGA-CAAGGGTTGCAATAGTAGGATCGA
65 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACA-GACCAAGGGTTGCAACAGCAGGACCGA
* * * *
12298284 CAGAAC-GTAGGAGGGGATCAGGTCGGTCCCCA
128 CAGAACAGAAAG-GGGGATCAGGCCGATCCCCA
* **
12298316 GCTTGCGCATTCTGCCTCTTCGACCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
1 GCTTGCGCATTCTGCCTCTTCGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
12298381 CATACGGAGTTCATTCCATGTCTAAGCA
66 CATACGGAGTTCATTCCATGTCTAAGCA
12298409 TACGGAGTTC
Statistics
Matches: 199, Mismatches: 44, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
157 6 0.03
158 112 0.56
159 78 0.39
160 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GCTTGCGCATTCTGCCTCTTCGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTAAGCACCAGACAGACCAAGGGTTGCAACAGCAGGACCGACAG
AACAGAAAGGGGGATCAGGCCGATCCCCA
Found at i:12298416 original size:26 final size:26
Alignment explanation
Indices: 12298380--12298432 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12298370 GTTGGCTTAG
12298380 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12298406 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12298432 G
1 G
12298433 ATCACCTCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12298808 original size:26 final size:26
Alignment explanation
Indices: 12298778--12298830 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12298768 GTTGACTTAG
*
12298778 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12298804 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12298830 G
1 G
12298831 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12299239 original size:159 final size:159
Alignment explanation
Indices: 12298933--12299307 Score: 386
Period size: 159 Copynumber: 2.4 Consensus size: 159
12298923 GTTGAGCACT
* * * *
12298933 CGCACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTAG
1 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGATCATTCCATGTCTAAGCACTAGCTAG
* ** * * **
12298998 ACCGAGGGTTGTGGTAGTGGGACAGACAGCACGCAGAGGGGGATCGAGCTGATCTCTGGCTTGTG
66 ACCGAGGGTTGTGATAGCAGGACAGACAGCACGCAGAGGGGGATCGAGCTGATCCCCGGCTTACG
* *
12299063 CATTATGCTTCTTCGGTCAGCTCAGTGCC
131 CATTATGCTTCTCCGGTCAGCTCAGGGCC
* * *
12299092 CGTACGCTCGTTTCGTGGGTTGACTTATGG-ATACGGAGATCATTCTCA-GTCTAAG-ATTGGAC
1 CGCACGCTCGTTTCGTGGGTTGACTTA-GGCATACGGAGATCATTC-CATGTCTAAGCACTAG-C
* * *
12299154 TAGATCGAGGGTTGTGATAGCAGGATC-GATAGCACGCAG-GGGAGGATCG-GGTCGATCCCCGG
63 TAGACCGAGGGTTGTGATAGCAGGA-CAGACAGCACGCAGAGGG-GGATCGAGCT-GATCCCCGG
* * *
12299216 CTTACGCATTCTGCCTT-TCCGGTCGGCTGAGGGCC
125 CTTACGCATTATG-CTTCTCCGGTCAGCTCAGGGCC
* * * ** *
12299251 CGCATGCTCGTTTCATGGGTTGGCTTAGGCATTTGGAGTTCATTCCATGTCTAAGCA
1 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGATCATTCCATGTCTAAGCA
12299308 TACAAAGTTC
Statistics
Matches: 177, Mismatches: 29, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
158 11 0.06
159 157 0.89
160 9 0.05
ACGTcount: A:0.18, C:0.23, G:0.31, T:0.27
Consensus pattern (159 bp):
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGATCATTCCATGTCTAAGCACTAGCTAG
ACCGAGGGTTGTGATAGCAGGACAGACAGCACGCAGAGGGGGATCGAGCTGATCCCCGGCTTACG
CATTATGCTTCTCCGGTCAGCTCAGGGCC
Found at i:12299319 original size:899 final size:898
Alignment explanation
Indices: 12297856--12299502 Score: 2147
Period size: 899 Copynumber: 1.8 Consensus size: 898
12297846 GTGCCCGTAT
*
12297856 GCTCATTTCGTGGGTTGACTTAGGCATACAGAGGTTATCCCCAGTTTAAGCATACGGAGTTCATT
1 GCTCATTTCATGGGTTGACTTAGGCATACAGAGGTTATCCCCAGTTTAAGCATACGGAGTTCATT
* * * * ** *
12297921 CCTAGTCTAAGATCGGACCGGACCGAAGGCTGCTGCAGTAGAATCGACAGCACGCAGGGGGGATC
66 CCCAGTCTAAGATCAGACCGGACCGAAGGCTACTGCAGCAGAATCGACAGCACGCAGAAGAGATC
* ** * * *
12297986 GGGCTGATCCTTGGCTTGCGCATTCTGCCTTTCCGGCCGACTGAGCACCCGCACGCCCGTTTCGT
131 GAGCTGATCCTCAGCTTGCACATTCTACCTCTCCGGCCGACTGAGCACCCGCACGCCCGTTTCGT
*
12298051 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCA
196 GGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCA
* * *
12298116 GCAGGACCGACAGTACAGAAAGGGGGATCGGGCCGATCTCTGGCTTGCGCATTATGCCTCTCAGG
261 GCAGGACAGACAGCACAGAAAGGGGGATCGAGCCGATCTCTGGCTTGCGCATTATGCCTCTCAGG
* * * *
12298181 CTGGCTCAGCACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCT
326 CTAGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGATCATTCCCAGTCT
* * * *
12298246 ATGATCGGACAGGACAAGGGTTGCAATAGTAGGATCGACAGAACGTAGGAGGGGATCAGGTCGGT
391 AAGATCGGACAGGACAAGGGTTGCAATAGCAGGATCGACAGAACGCAGGAGGGGATCAGGTCGAT
* * *
12298311 CCCCAGCTTGCGCATTCTGCCTCTTCGACCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGC
456 CCCCAGCTTACGCATTCTGCCTCTTCGACCGACTGAGGGCCCGCACGCTCGTTTCATGGGTTGGC
**
12298376 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-ACCT
521 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGA-C-
* * * ** *
12298440 CG-GACTGAGGGTTGCGGCAGCAGGACCAGCAGCCTGATCGATAGCACGT-CGGAG-GGACCAAG
584 CGAAAC-GAGGGTTACGACAGCAGGACCAGCAGCAGGATCGATAGCA--TACAGAGAGGACCAAG
* * *
12298502 CCGATCCCTGGCTTACACATTCTGCCTCTCCGGTCGGCTGAGCGCCCACACGCTCATTTTGTGGG
646 CCGATCCCTGGCTTACACATTCTGCCTCTCCGGCCGGCTAAGCGCCCACACGCTCATTTCGTGGG
* * *
12298567 TTGGCTAAGGCGTACGGAGTTCATTGCAT-GTCTAAGCCCCAGCCGGACCAATGGTTGTGGTAGC
711 TTGACTAAGGCATACGGAGTTCA-TCCATAGTCTAAGCCCCAGCCGGACCAATGGTTGTGGTAGC
12298631 AGGACCGGCAGCGGGATCGGTAGCACATAGAGGGGGATCGGGCTAATCCTCAGCTTGCGTATTAT
775 AGGACCGGCAGCGGGATCGGTAGCACATAGAGGGGGATCGGGCTAATCCTCAGCTTGCGTATTAT
12298696 TCCTCTCTGACCTCTCCGACTTACGCATCCTGCCTCTCTGGTCGACTGAGCGTCCGTGC
840 TCCTCTCTGACCTCTCCGACTTACGCATCCTGCCTCTCTGGTCGACTGAGCGTCCGTGC
* *
12298755 GCTCGTTTCATGGGTTGACTTAGGCATACGGA-GTTCATCCCCA-TTCTAAGCATACGGAGTTCA
1 GCTCATTTCATGGGTTGACTTAGGCATACAGAGGTT-ATCCCCAGTT-TAAGCATACGGAGTTCA
* * * * * * * *
12298818 TTCCCAGTCTAAGATCAGACCGGATCGAGGGTTAC-GATAGCAGGATTGACAGCATGTA-AAGAG
64 TTCCCAGTCTAAGATCAGACCGGACCGAAGGCTACTG-CAGCAGAATCGACAGCACGCAGAAGAG
* * ** *
12298881 ATCGAGCTGATCCTCAGCTTTCACATTCTACCTCTCTGGCCGGTTGAGCACTCGCACGCCCGTTT
128 ATCGAGCTGATCCTCAGCTTGCACATTCTACCTCTCCGGCCGACTGAGCACCCGCACGCCCGTTT
* *
12298946 CGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTAGACCGAGGGTTGTG
193 CGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTG
* ** * * * *
12299011 GTAGTGGGACAGACAGCAC-GCAGAGGGGGATCGAGCTGATCTCTGGCTTGTGCATTATGCTTCT
258 GCAGCAGGACAGACAGCACAG-AAAGGGGGATCGAGCCGATCTCTGGCTTGCGCATTATGCCTC-
** * * *
12299075 TC-GG-TCAGCTCAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTATGG-ATACGGAGATCATTC
321 TCAGGCT-AGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTA-GGCATACAGAGATCATTC
* * * ** * *
12299137 TCAGTCTAAGATTGGACTA-GATCGAGGGTTGTGATAGCAGGATCGATAGCACGCAGG-GGAGGA
384 CCAGTCTAAGATCGGAC-AGGA-CAAGGGTTGCAATAGCAGGATCGACAGAACGCAGGAGG-GGA
* * ** * *
12299200 TCGGGTCGATCCCCGGCTTACGCATTCTGCCT-TTCCGGTCGGCTGAGGGCCCGCATGCTCGTTT
446 TCAGGTCGATCCCCAGCTTACGCATTCTGCCTCTT-CGACCGACTGAGGGCCCGCACGCTCGTTT
**
12299264 CATGGGTTGGCTTAGGCATTTGGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAGTCT
510 CATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAGTCT
* * *
12299329 AAGATCGGACCGAAACGAGGGTTACGACAGCAGGACCGGTAGTAGGATCGATAGCATACAGAGAG
575 AAGATC-GACCGAAACGAGGGTTACGACAGCAGGACCAGCAGCAGGATCGATAGCATACAGAGAG
* * * * * *
12299394 GACCGAGCTGATCCCTGGCTTTCGCATTCTGCCTCTCCGGCCTGCTAAGCGCCCGCACGCTCATT
639 GACCAAGCCGATCCCTGGCTTACACATTCTGCCTCTCCGGCCGGCTAAGCGCCCACACGCTCATT
*
12299459 TCGTGGGTTGACTTAGGCATACGGAGTTCATCCATAGTCTAAGC
704 TCGTGGGTTGACTAAGGCATACGGAGTTCATCCATAGTCTAAGC
12299503 ATATGGAGTT
Statistics
Matches: 634, Mismatches: 97, Indels: 34
0.83 0.13 0.04
Matches are distributed among these distances:
897 3 0.00
898 249 0.39
899 378 0.60
900 3 0.00
901 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (898 bp):
GCTCATTTCATGGGTTGACTTAGGCATACAGAGGTTATCCCCAGTTTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCGGACCGAAGGCTACTGCAGCAGAATCGACAGCACGCAGAAGAGATC
GAGCTGATCCTCAGCTTGCACATTCTACCTCTCCGGCCGACTGAGCACCCGCACGCCCGTTTCGT
GGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCA
GCAGGACAGACAGCACAGAAAGGGGGATCGAGCCGATCTCTGGCTTGCGCATTATGCCTCTCAGG
CTAGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGATCATTCCCAGTCT
AAGATCGGACAGGACAAGGGTTGCAATAGCAGGATCGACAGAACGCAGGAGGGGATCAGGTCGAT
CCCCAGCTTACGCATTCTGCCTCTTCGACCGACTGAGGGCCCGCACGCTCGTTTCATGGGTTGGC
TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGACCG
AAACGAGGGTTACGACAGCAGGACCAGCAGCAGGATCGATAGCATACAGAGAGGACCAAGCCGAT
CCCTGGCTTACACATTCTGCCTCTCCGGCCGGCTAAGCGCCCACACGCTCATTTCGTGGGTTGAC
TAAGGCATACGGAGTTCATCCATAGTCTAAGCCCCAGCCGGACCAATGGTTGTGGTAGCAGGACC
GGCAGCGGGATCGGTAGCACATAGAGGGGGATCGGGCTAATCCTCAGCTTGCGTATTATTCCTCT
CTGACCTCTCCGACTTACGCATCCTGCCTCTCTGGTCGACTGAGCGTCCGTGC
Found at i:12299523 original size:26 final size:26
Alignment explanation
Indices: 12299475--12299527 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12299465 GTTGACTTAG
*
12299475 GCATACGGAGTTCATCCATAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
*
12299501 GCATATGGAGTTCATTCC-CAGTCTAA
1 GCATACGGAGTTCA-TCCACAGTCTAA
12299527 G
1 G
12299528 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:12299800 original size:344 final size:334
Alignment explanation
Indices: 12299393--12300176 Score: 951
Period size: 344 Copynumber: 2.3 Consensus size: 334
12299383 CATACAGAGA
* * * *
12299393 GGACCGAGCTGATCCCTGGCTTTCGCATTCTGCCTCTCCGGCCTGCTAAGCGCCCGCACGCTCAT
1 GGACCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTAAGCGCCCGCACGCTCAT
* *
12299458 TTCGTGGGTTGACTTAGGCATACGGAGTTCATCCATAGTCTAAGCATATGGAGTTCATTCCCAGT
66 TTCGTGGGTTGACTTAGGCATACGGAGTTCATCCACAGTATAAGCATATGGAGTTCATTCCCAGT
* * * * *
12299523 CTAAGATCGGATCGGATCGAGGGTTGCGACAGTAGGATCGGCAGCACATAGGGGGGA-CCG-GAC
131 CTAAGATCAGACCGAACCGAGGGTTGCGACAGTAGGATCGACAGCACATAGGGGGGAGCCGCGAC
** * *
12299586 TTGTGCATTCTACCTCTCCGGCCTGCTGAGCGCCCGCACGCCTGTTTCATGGGTTGCCTTAGGCA
196 TTCCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGCCTTAGGCA
** * *
12299651 TAGGGAGTTCATTCCATGTCTAAGTTCCAGCCGGACCGAGGGTTGTCGTAGCAGGACCAGCAGCG
261 TAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAGG-T-T-GT----GG--CAGCA---
* * *
12299716 GGATCGGTAGCACGCAGAGGG
314 GGACCGGCAGCACGCAAAGGG
* * * * *
12299737 GGACCGGGCTGATCCCTGGCTTGCGTATTATGCCTCTCCGACCGGTTGAGCGCCCGTACGCTCAT
1 GGACCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTAAGCGCCCGCACGCTCAT
* *
12299802 TTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTATAAGCATATGGAGTTCATTCCCAGT
66 TTCGTGGGTTGACTTAGGCATACGGAGTTCATCCACAGTATAAGCATATGGAGTTCATTCCCAGT
*
12299867 CTAAGATCAGACCGAACCGAGGGTTGCGACAGTAGGATCGACAGCACGTAGGGGGGATCGGGCCG
131 CTAAGATCAGACCGAACCGAGGGTTGCGACAGTAGGATCGACAGCACATAGGGGGGA----GCCG
* * * * *
12299932 ATCCCCGGCTTCCGTATTCTGCCTCTCCGGCCGGCTGTGCTCCCGCACGCCCGTTTCATGGGTTG
192 -----CGACTTCCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTG
*
12299997 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAGGTTGTGGCAGCAGGA
252 CCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAGGTTGTGGCAGCAGGA
12300062 CCGGCAGCACGCAAAGGG
317 CCGGCAGCACGCAAAGGG
* * * * * * * * *
12300080 GGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCTGGCTCAGTGCCCGCATGCTCGT
1 GGACCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTAAGCGCCCGCACGCTCAT
*
12300145 TTCGTGGGTTGACTTATGCATACGGAGTTCAT
66 TTCGTGGGTTGACTTAGGCATACGGAGTTCAT
12300177 TCCCAGTCTA
Statistics
Matches: 378, Mismatches: 51, Indels: 23
0.84 0.11 0.05
Matches are distributed among these distances:
343 100 0.26
344 168 0.44
346 5 0.01
348 2 0.01
349 3 0.01
352 2 0.01
353 1 0.00
354 1 0.00
355 96 0.25
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (334 bp):
GGACCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTAAGCGCCCGCACGCTCAT
TTCGTGGGTTGACTTAGGCATACGGAGTTCATCCACAGTATAAGCATATGGAGTTCATTCCCAGT
CTAAGATCAGACCGAACCGAGGGTTGCGACAGTAGGATCGACAGCACATAGGGGGGAGCCGCGAC
TTCCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGCCTTAGGCA
TAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAGGTTGTGGCAGCAGGACCGGCAGCA
CGCAAAGGG
Found at i:12299849 original size:26 final size:26
Alignment explanation
Indices: 12299819--12299871 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12299809 GTTGACTTAG
12299819 GCATACGGAGTTCATCCCCAGTATAA
1 GCATACGGAGTTCATCCCCAGTATAA
* * *
12299845 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTATAA
12299871 G
1 G
12299872 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTATAA
Found at i:12300146 original size:159 final size:157
Alignment explanation
Indices: 12299882--12300348 Score: 454
Period size: 159 Copynumber: 2.9 Consensus size: 157
12299872 ATCAGACCGA
* * * * * * * *
12299882 ACCGAGGGTTGCGACAGTAGGATCGACAGCACGTAGGGGGGA-TCGGGCCGATCCCCGGCTTCCG
1 ACCGAAGGTTGCGACAGCAGGACCGGCAGAACGCAAGGGGGACT-GGGCCGATCCCCGGCTTGCG
* * * *
12299946 TATTCTGCCTCTCCGGCCGGCT-GTGCTCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGG
65 CATTCTGCCTCTCCGGCTGGCTAGTG--CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
*
12300010 GAGTTCATTCCATGTCTAAGCCCCAGCCAG
128 GAGTTCATTCCATGTCTAAGCCCCAACCAG
* * *
12300040 ACCGAAGGTTGTGGCAGCAGGACCGGCAGCACGCAAAGGGGGACTGGGCCGATCCCCGGCTTGCG
1 ACCGAAGGTTGCGACAGCAGGACCGGCAGAACGC-AAGGGGGACTGGGCCGATCCCCGGCTTGCG
* * * * * *
12300105 CATTATGCCTCTTCGGCTGGCTCAGTGCCCGCATGCTCGTTTCGTGGGTTGACTTATGCATACGG
65 CATTCTGCCTCTCCGGCTGGCT-AGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
** * *
12300170 AGTTCATTCCCA-GTCTAAGATCGAACCGG
129 AGTTCATT-CCATGTCTAAGCCCCAACCAG
* * * * ** * * * * * * *
12300199 ATCGAGGGTTGCGATAGTAGGATTGGTAGAATGCAGGGGGGAACCGGACGGATCCCCGACTTGCG
1 ACCGAAGGTTGCGACAGCAGGACCGGCAGAACGCAAGGGGG-ACTGGGCCGATCCCCGGCTTGCG
* * * *
12300264 CATTCTGCCTCTCCGACTGGCTGAGCGCCCGGACGCTCGTTTCATGGGTTGGCTTAGGTATACGG
65 CATTCTGCCTCTCCGGCTGGCT-AGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
12300329 AGTTCATTCCATGTCTAAGC
129 AGTTCATTCCATGTCTAAGC
12300349 ATATGGAGTT
Statistics
Matches: 250, Mismatches: 52, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
158 36 0.14
159 207 0.83
160 4 0.02
161 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.23
Consensus pattern (157 bp):
ACCGAAGGTTGCGACAGCAGGACCGGCAGAACGCAAGGGGGACTGGGCCGATCCCCGGCTTGCGC
ATTCTGCCTCTCCGGCTGGCTAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGCCCCAACCAG
Found at i:12300820 original size:26 final size:26
Alignment explanation
Indices: 12300783--12300835 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12300773 GTTGACTTCG
*
12300783 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
*
12300809 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
12300835 G
1 G
12300836 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAGTCTAA
Found at i:12301286 original size:26 final size:26
Alignment explanation
Indices: 12301257--12301309 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12301247 GTTGGCTTAG
12301257 GCATACGGAGTTCAGTCC-ATGTCTAA
1 GCATACGGAGTTCAGTCCTA-GTCTAA
*
12301283 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCAGTCCTAGTCTAA
12301309 G
1 G
12301310 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCTAGTCTAA
Found at i:12301643 original size:26 final size:26
Alignment explanation
Indices: 12301613--12301665 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12301603 GTTGACTTAG
12301613 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
12301639 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12301665 G
1 G
12301666 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12301960 original size:159 final size:157
Alignment explanation
Indices: 12301758--12302168 Score: 414
Period size: 157 Copynumber: 2.6 Consensus size: 157
12301748 CTCTCTGGCC
* * * *
12301758 GGCTGAGCACCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
1 GGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
*
12301823 GCCCCAATCGAACCAAGGGTTGTGGCAGCGGGATCGACAGCATGCAGAGAGGGACCGGACTGATC
66 GCCCCAATCGAACCAAGGGTTGTGGCAGCAGGATCGACAGCA--CAGAGAGGGACCGGACTGATC
* * * *
12301888 CCTGACTTGCGCATTATGCCTTTTCGATT
129 CCTGACTTGCACATTATGCCTCTCCGACT
** ** * * *
12301917 GGCTCAGTGCCCGCGTGCTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCAT-TCTA
1 GGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTA
** * ** * * * *
12301981 AG-ATCAGA-CCAGACCAAGGGTTGCAGCAGCAGGATCGATAGCACATAGGGGGACCGGGCTGAT
65 AGCCCCA-ATCGA-ACCAAGGGTTGTGGCAGCAGGATCGACAGCACAGAGAGGGACCGGACTGAT
* * * *
12302044 CCTTGGCTTGCACATTCTGCCTCTCCGGCT
128 CCCTGACTTGCACATTATGCCTCTCCGACT
* * * * *
12302074 GTCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCAAGTCTAA
1 GGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* ** *
12302139 GCCCCAGTCGAACTGAGGGTTGTGGTAGCA
66 GCCCCAATCGAACCAAGGGTTGTGGCAGCA
12302169 AGACCAGTAG
Statistics
Matches: 196, Mismatches: 50, Indels: 14
0.75 0.19 0.05
Matches are distributed among these distances:
156 3 0.02
157 103 0.53
158 8 0.04
159 78 0.40
160 4 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
GGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCCCCAATCGAACCAAGGGTTGTGGCAGCAGGATCGACAGCACAGAGAGGGACCGGACTGATCCC
TGACTTGCACATTATGCCTCTCCGACT
Found at i:12302117 original size:157 final size:155
Alignment explanation
Indices: 12301639--12302139 Score: 452
Period size: 159 Copynumber: 3.2 Consensus size: 155
12301629 CTCAGTCTAA
* * * * *
12301639 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGTAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATC-GACCAAGGGTTGCG-CAGCAGGATCGACA
** * * * * * *
12301704 GCATGTAAGGCGGACCTGG-TCGATCCCCGGCTTGCGCATTCTGTCTCTCTGGCCGGCTGAGCAC
64 GCACAT-AGGGGGACCGGGCT-GATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCAC
* *
12301768 CCGCACGCCCGTTTTGTGGGTTGGCTTAG
127 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * *
12301797 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ATCGAACCAAGGGTTGTGGCAGCGGGATCGA
1 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGATCG-ACCAAGGGTTG-CGCAGCAGGATCGA
* * * * * * * ** * *
12301860 CAGCATGCAGAGAGGGACCGGACTGATCCCTGACTTGCGCATTATGCCTTTTCGATTGGCTCAGT
62 CAGCA--CATAGGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGC
* ** * *
12301925 GCCCGCGTGCTCGTTTCGTGGGTTGACTTAT
125 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
12301956 GCATACGAAGTTCATTCCCATTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAGGATCGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATC-GACCAAGGGTTGC-GCAGCAGGATCGACA
* * *
12302021 GCACATAGGGGGACCGGGCTGATCCTTGGCTTGCACATTCTGCCTCTCCGGCTGTCTGAGCACCC
64 GCACATAGGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCACCC
*
12302086 GCACGCTCGTTTCATGGGTTGGCTTAG
129 GCACGCTCGTTTCGTGGGTTGGCTTAG
*
12302113 GCATAC-AGAGTTCATTCCAAGTCTAAG
1 GCATACGA-AGTTCATTCCCAGTCTAAG
12302140 CCCCAGTCGA
Statistics
Matches: 265, Mismatches: 66, Indels: 25
0.74 0.19 0.07
Matches are distributed among these distances:
156 1 0.00
157 96 0.36
158 51 0.19
159 112 0.42
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (155 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGACCAAGGGTTGCGCAGCAGGATCGACAGC
ACATAGGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCACCCGC
ACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12302158 original size:157 final size:157
Alignment explanation
Indices: 12301725--12302311 Score: 460
Period size: 159 Copynumber: 3.6 Consensus size: 157
12301715 GGACCTGGTC
* * * * * *
12301725 GATCCCCGGCTTGCGCATTCTGTCTCTCTGGCCGGCTGAGCACCCGCACGCCCGTTTTGTGGGTT
1 GATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
* * * ** *
12301790 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGAACCAAGGGTTGTGGCAGCGGG
66 GGCTTAGGCATA-CGAGTTCATTCCAAGTCTAAGCCCCAGTCGAACCAAGGGTTGCAGCAGCAGG
12301855 ATCGACAGCATGCAGAGAGGGACCGGACT
130 ATCGACAGCA-GCAGAGAGGGACCGGACT
* * * * ** * ** **
12301884 GATCCCTGACTTGCGCATTATGCCTTTTCGATTGGCTCAGTGCCCGCGTGCTCGTTTCGTGGGTT
1 GATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
* * * * ** * *
12301949 GACTTATGCATACGAAGTTCATTCCCATTCTAAG-ATCAGACCAGACCAAGGGTTGCAGCAGCAG
66 GGCTTAGGCATACG-AGTTCATTCCAAGTCTAAGCCCCAGTCGA-ACCAAGGGTTGCAGCAGCAG
* * * *
12302013 GATCGATAGCA-CATAGGGGGACCGGGCT
129 GATCGACAGCAGCAGAGAGGGACCGGACT
* * * *
12302041 GATCCTTGGCTTGCACATTCTGCCTCTCCGGCTGTCTGAGCACCCGCACGCTCGTTTCATGGGTT
1 GATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
* *
12302106 GGCTTAGGCATACAGAGTTCATTCCAAGTCTAAGCCCCAGTCGAACTGAGGGTTGTGGTAGCAAG
66 GGCTTAGGCATAC-GAGTTCATTCCAAGTCTAAGCCCCAGTCGAAC-CAAGG--GT--T-GC-AG
* * **
12302171 ACCAGTAGCGGGATCGACAGCATGCAGAGAAGGACCAAACT
123 --C---AGCAGGATCGACAGCA-GCAGAGAGGGACCGGACT
* ** * * * * * * *
12302212 GATCCCCGGCTCACGCATTATGCCTCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTT
1 GATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
* *
12302277 GACTTAGGCATACGGAGTTCATGCCCAA-TCTAAGC
66 GGCTTAGGCATAC-GAGTTCAT-TCCAAGTCTAAGC
12302312 ATACAGAGTT
Statistics
Matches: 327, Mismatches: 82, Indels: 26
0.75 0.19 0.06
Matches are distributed among these distances:
157 94 0.29
158 14 0.04
159 101 0.31
160 2 0.01
162 1 0.00
163 2 0.01
164 2 0.01
166 1 0.00
169 14 0.04
171 92 0.28
172 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (157 bp):
GATCCCTGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
GGCTTAGGCATACGAGTTCATTCCAAGTCTAAGCCCCAGTCGAACCAAGGGTTGCAGCAGCAGGA
TCGACAGCAGCAGAGAGGGACCGGACT
Found at i:12302315 original size:26 final size:26
Alignment explanation
Indices: 12302284--12302335 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12302274 GTTGACTTAG
*
12302284 GCATACGGAGTTCATGCCCAATCTAA
1 GCATACAGAGTTCATGCCCAATCTAA
**
12302310 GCATACAGAGTTCATTTCCAATCTAA
1 GCATACAGAGTTCATGCCCAATCTAA
12302336 AATCAAACTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATGCCCAATCTAA
Found at i:12302354 original size:671 final size:670
Alignment explanation
Indices: 12301369--12302812 Score: 1767
Period size: 671 Copynumber: 2.2 Consensus size: 670
12301359 GGGATCGAAC
* ** * * * * * *
12301369 CGATCCCCGACTTGTGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCATTTTGTGGGT
1 CGATCCCTGACTTGCACATTCTGCCTCTCCGGCTGACTGAGCACCCGCACGCTCGTTTCGTGGGT
*
12301434 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAACCGGACAAAAGGTTGTGGTAGCAA
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAACCGAACAAAAGGTTGTGGTAGCAA
* * ** *** * **
12301499 GACCGACAGTGGGATCGGCAGCACGCAGAGGGGGACCGGGCTGATCCCTGACTTGCGCATTATGC
131 GACCGACAGCGGGATCGACAGCACGCAGAGAAGGACCAAACTGATCCCCGACTCACGCATTATGC
* **
12301564 CTCTCCGATCGGTTGAGAGCCCGCAAGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATC
196 CTCTCCGACCGACTGAGAGCCCGCAAGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATC
* * * * ** *
12301629 CTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGT
261 CTCAATCTAAGCATACAGAGTTCATTCCCAATCTAAAATCAAATCGGACCGAGGGTTACGACAGC
* * * *
12301694 AGGATCGACAGCATGTAAGGCGGACCTGG-TCGATCCCCGGCTTGCGCATTCTGTCTCTCTGGCC
326 AGGATCGACAGCACGCAAGGCGGACC-GGCT-GATCCCCGGCTTGCGCATTCTGCCTCTCTGACC
* * * ** *
12301758 GGCTGAGCACCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
389 GGCTGAGCACCCACACACCCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
** * * *
12301823 GCCCCAATC-GAACCAAGGGTTGTGGCAGCGGGATC-GACAGCATGCAGAGAGGGACCGGACTGA
454 GCCCCAGCCAG-ACCAAGGGTTATGGCAGCAGGACCAG-CAGCATGCAGAGAGGGACCGGAC-GA
** ** * *
12301886 TCC-CTGACTTGCGCATTATGCCT-TTTCGATTGGCTCAGTGCCCGCGTGCTCGTTTCGTGGGTT
516 TCCTC-GACTTGCGCATTATGCCTCTTT-GACCGGCTCAGTGCCCGCACGCTCATTTCGTGGGTC
* * *
12301949 GACTTATGCATACGAAGTTCATTCCCATTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAGG
579 GACTTATGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCAGAAGCAGG
*
12302014 ATCGATAGCACATA-GGGGGACCGGG-
644 ATCGACAGCACATAGGGGGGACCGGGT
* * * *
12302039 CTGATCCTTGGCTTGCACATTCTGCCTCTCCGGCTGTCTGAGCACCCGCACGCTCGTTTCATGGG
1 C-GATCCCTGACTTGCACATTCTGCCTCTCCGGCTGACTGAGCACCCGCACGCTCGTTTCGTGGG
* * * ** ** *
12302104 TTGGCTTAGGCATACAGAGTTCATTCCAAGTCTAAGCCCCAGTCGAACTGAGGGTTGTGGTAGCA
65 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAACCGAACAAAAGGTTGTGGTAGCA
* * *
12302169 AGACC-AGTAGCGGGATCGACAGCATGCAGAGAAGGACCAAACTGATCCCCGGCTCACGCATTAT
130 AGACCGA-CAGCGGGATCGACAGCACGCAGAGAAGGACCAAACTGATCCCCGACTCACGCATTAT
* * * *
12302233 GCCTCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
194 GCCTCTCCGACCGACTGAGAGCCCGCAAGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * *
12302298 TGCC-CAATCTAAGCATACAGAGTTCATTTCCAATCTAAAATCAAA-CTGGCCCGAGGGTTACGG
259 T-CCTCAATCTAAGCATACAGAGTTCATTCCCAATCTAAAATCAAATC-GGACCGAGGGTTACGA
* * ** * *
12302361 CAGCAGGATCGGCAGCACGCAAGGGGGACCGGCTGATCTTCGGCTTGTGCATTCTGCCTCTTTGA
322 CAGCAGGATCGACAGCACGCAAGGCGGACCGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGA
* ** * *
12302426 CCGGTTGAGTGCCCACACATCCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTGCATGTCT
387 CCGGCTGAGCACCCACACACCCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCT
* * * * *
12302491 AAGCTCCAGCCAGACCGAGGGTTATGGTAGCAGGACCAGCAGCATGCAGAGGGGGACCGGGCGAT
452 AAGCCCCAGCCAGACCAAGGGTTATGGCAGCAGGACCAGCAGCATGCAGAGAGGGACCGGACGAT
* *
12302556 CCTCGGCTTGCGCATTATGCCTCTTTGGCCGGCTCAGTGCCCGCACGCTCATTTCGTGGGTCGAC
517 CCTCGACTTGCGCATTATGCCTCTTTGACCGGCTCAGTGCCCGCACGCTCATTTCGTGGGTCGAC
* * * **
12302621 TTATGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCAAACTGAGGGTTGCAGAAGCAGGATC
582 TTATGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCAGAAGCAGGATC
*
12302686 GACAGCACATAGGGGGGGATCGGGT
647 GACAGCACATA-GGGGGGACCGGGT
* *
12302711 CGATCCCTGACTTGCACATTCTGCCTCTCC-GATCGACTGAGCACCCACACGCTCGTTTCGTGGG
1 CGATCCCTGACTTGCACATTCTGCCTCTCCGGCT-GACTGAGCACCCGCACGCTCGTTTCGTGGG
12302775 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
65 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
12302813 TACGGAGTTC
Statistics
Matches: 652, Mismatches: 109, Indels: 25
0.83 0.14 0.03
Matches are distributed among these distances:
669 121 0.19
670 138 0.21
671 390 0.60
672 3 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (670 bp):
CGATCCCTGACTTGCACATTCTGCCTCTCCGGCTGACTGAGCACCCGCACGCTCGTTTCGTGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAACCGAACAAAAGGTTGTGGTAGCAA
GACCGACAGCGGGATCGACAGCACGCAGAGAAGGACCAAACTGATCCCCGACTCACGCATTATGC
CTCTCCGACCGACTGAGAGCCCGCAAGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATC
CTCAATCTAAGCATACAGAGTTCATTCCCAATCTAAAATCAAATCGGACCGAGGGTTACGACAGC
AGGATCGACAGCACGCAAGGCGGACCGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGG
CTGAGCACCCACACACCCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
CCCAGCCAGACCAAGGGTTATGGCAGCAGGACCAGCAGCATGCAGAGAGGGACCGGACGATCCTC
GACTTGCGCATTATGCCTCTTTGACCGGCTCAGTGCCCGCACGCTCATTTCGTGGGTCGACTTAT
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCAGAAGCAGGATCGACA
GCACATAGGGGGGACCGGGT
Found at i:12302681 original size:158 final size:158
Alignment explanation
Indices: 12302348--12302810 Score: 440
Period size: 158 Copynumber: 2.9 Consensus size: 158
12302338 TCAAACTGGC
* * * * * * *
12302348 CCGAGGGTTACGGCAGCAGGATCGGCAGCACGCA-AGGGGGACC-GGCTGATCTTCGGCTTGTGC
1 CCGAGGGTTACAGAAGCAGGACCAGCAGCATGCAGAGGGGGACCGGGC-GATCCTCGGCTTGCGC
* * * *
12302411 ATTCTGCCTCTTTGACCGGTTGAGTGCCCACAC-ATCCATTTCATGGGTTGGCTTAGGCATAAGG
65 ATTCTGCCTCTTTGACCGGCTGAGTGCCCACACGCT-CATTTCGTGGGTTGGCTTAGGCATACGG
* * *
12302475 AGTTCATTGCATGTCTAAGCTCCAGCCAGA
129 AGTTCATTCCATGTCTAAGATCCAGCCAAA
** *
12302505 CCGAGGGTTATGGTAGCAGGACCAGCAGCATGCAGAGGGGGACCGGGCGATCCTCGGCTTGCGCA
1 CCGAGGGTTACAGAAGCAGGACCAGCAGCATGCAGAGGGGGACCGGGCGATCCTCGGCTTGCGCA
* * * * * * *
12302570 TTATGCCTCTTTGGCCGGCTCAGTGCCCGCACGCTCATTTCGTGGGTCGACTTATGCATACGGAG
66 TTCTGCCTCTTTGACCGGCTGAGTGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAG
*
12302635 TTCATTCC-TAGTCTAAGAT-TAGACCAAA
131 TTCATTCCAT-GTCTAAGATCCAG-CCAAA
* * * * *
12302663 CTGAGGGTTGCAGAAGCAGGATCGACAGCA-CAT--AGGGGGGGATCGGGTCGATCC-CTGACTT
1 CCGAGGGTTACAGAAGCAGGA-C--CAGCAGCATGCAGAGGGGGACCGGG-CGATCCTC-GGCTT
* ** * * ** *
12302724 GCACATTCTGCCTCTCCGATCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATA
61 GCGCATTCTGCCTCTTTGACCGGCTGAGTGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATA
12302789 CGGAGTTCATTCCATGTCTAAG
126 CGGAGTTCATTCCATGTCTAAG
12302811 CATACGGAGT
Statistics
Matches: 250, Mismatches: 45, Indels: 20
0.79 0.14 0.06
Matches are distributed among these distances:
157 32 0.13
158 124 0.50
159 85 0.34
160 4 0.02
161 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
CCGAGGGTTACAGAAGCAGGACCAGCAGCATGCAGAGGGGGACCGGGCGATCCTCGGCTTGCGCA
TTCTGCCTCTTTGACCGGCTGAGTGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGATCCAGCCAAA
Found at i:12303553 original size:26 final size:26
Alignment explanation
Indices: 12303516--12303568 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12303506 GTTGACTTAG
*
12303516 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
12303542 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12303568 G
1 G
12303569 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12304457 original size:26 final size:26
Alignment explanation
Indices: 12304420--12304472 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12304410 GTTGACTTAG
*
12304420 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
12304446 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12304472 G
1 G
12304473 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12304679 original size:904 final size:905
Alignment explanation
Indices: 12302625--12305523 Score: 4615
Period size: 904 Copynumber: 3.2 Consensus size: 905
12302615 GTCGACTTAT
* ** * * *
12302625 GCATACGGAGTTCATTCCTAGTCTAAGATTAGACCAAACTGAGGGTTGCAGA-AGCAGGATCGAC
1 GCATACGAAGTTCATTCCTAGTCTAAGATTAGACCGGACCGAGGGTTGC-GACAGTAGGATCGGC
** * * * * * *
12302689 AGCACATAGGGGGGGATCGGGTCGATCCCT-GACTTGCACATTCTGCCTCTCCGATCGACTGAGC
65 AGCACGCA-AGAGGGATCGGGCCGATCCCTAG-CTTGCGCATTTTGCCTCTCCGATCGGCTGAGC
* * *
12302753 ACCCACACG-CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
128 GCCCGCACGTCACGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
* ** * * * *
12302817 GAGTTCATT-CCATGT-TTATGATTTTGAGCCACGGTGCACATGTTGGTCTCAGGCATGTGCTGG
193 AAGTTCATTCCCA-GTCCAAT-ATTTTAAGCCACGGTGCACATGCTGGGCTCAAGCATGTGCTGG
* * * *
12302880 TGCC-TCATTTTTTTCACCCGAGGCACCATCACCGGAGCATCGTCGGAGCATTGCCGGAGAGCCT
256 TGCCAT-ATTTTTTTC-GCCGGGGCACCAT-------G-A-C--CAGAGCATCGCCGGAGAGCCT
* * ** * **
12302944 AACCGACGGCATTGGGGGTTCC-AGTGATTGGGGGGCCCGGGGGTGTGCGCACATGATGTGCAAT
308 AACCGACAGCATTGGGGGTTCCGA-CGATTGGGGGG-TAGGGGGTGTGTGCACATGATGTGTGAT
* ***
12303008 GGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
371 AGGTGCTGGTTGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
12303073 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
436 CCTTAAAGAGTATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATTGGG
* ** *
12303138 ACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTCCGAGTTTTT-GCTGAATTATTTTTTGCA
501 ACACTTTTTTCAAACGATCACAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTGTTTTTTGCA
* ** **
12303202 TGCCAACAAAAATACAAGAATCACCTCTAAAAAATTTGGGGACAAAACTCTTTCTAAAAAAATTT
566 TGCCAACAAAAATACAAGGATCACCTCTACCAAATTTGCAGACAAAACTCTTTCTAAAAAAATTT
** * *
12303267 TAAAAAATATCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCA
631 TAAAAAATCCCGAACCTTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCATCTTGCCA
12303332 CGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
696 CGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
12303397 CATGGCAGAAATATGAAGATGTGCTCGAACCCACCGACCACCTGTTCGATCCCCAGCTTGCGCAT
761 CATGGCAGAAATATGAAGATGTGCTCGAACCCACCGACCACCTGTTCGATCCCCAGCTTGCGCAT
12303462 CCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGT
826 CCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGT
12303527 TCATCCCCAGTCTAA
891 TCATCCCCAGTCTAA
*
12303542 GCATACGAAGTTCATTCCTAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGTAGGATCGGCA
1 GCATACGAAGTTCATTCCTAGTCTAAGATTAGACCGGACCGAGGGTTGCGACAGTAGGATCGGCA
* * *
12303607 GCACGCAAGAGGGATCGGGCCGATCGCTAGCTTGCGCATTTTGCCTCTTCGGTCGGCTGAGCGCC
66 GCACGCAAGAGGGATCGGGCCGATCCCTAGCTTGCGCATTTTGCCTCTCCGATCGGCTGAGCGCC
*
12303672 CGCACGTC-CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGCATACGAAG
131 CGCACGTCACGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAG
*
12303736 TTCATTCCCAGTCCAATATTTTAAGCCACAGTGCACATGCTGGGCTCAAGCATGTGCTGGTGCCA
196 TTCATTCCCAGTCCAATATTTTAAGCCACGGTGCACATGCTGGGCTCAAGCATGTGCTGGTGCCA
12303801 TATTTTTTTCGCCGGGGCACCATGACCAGAGCATCGCCGGAGAGCCTAACCGACAGCATTGGGGG
261 TATTTTTTTCGCCGGGGCACCATGACCAGAGCATCGCCGGAGAGCCTAACCGACAGCATTGGGGG
12303866 TTCCGACGATTGGGGGGTAGGGGGTGTGTGCACATGATGTGTGATAGGTGCTGGTTGTTGGCCCT
326 TTCCGACGATTGGGGGGTAGGGGGTGTGTGCACATGATGTGTGATAGGTGCTGGTTGTTGGCCCT
12303931 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGAT
391 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGAT
12303996 TTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATTGGGACACTTTTTTCAAACGATCA
456 TTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATTGGGACACTTTTTTCAAACGATCA
* *
12304061 CAAAATCTTCTCCACTTTGAGTTTTTAGCTAAATTGTTTTTTGCATGCCAAAAAAAATACAAGGA
521 CAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTGTTTTTTGCATGCCAACAAAAATACAAGGA
12304126 TCACCTCTACCAAATTTGCAGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCGAACCTTAA
586 TCACCTCTACCAAATTTGCAGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCGAACCTTAA
12304191 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTCACATGAAGGCT
651 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTCACATGAAGGCT
*
12304256 TAGGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGAT
716 TAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGAT
12304321 GTGCTCGAACCCACCGACCACCTGTTCGATCCCCAGCTTGCGCATCCTGCCTCTCTGGTCGGCTG
781 GTGCTCGAACCCACCGACCACCTGTTCGATCCCCAGCTTGCGCATCCTGCCTCTCTGGTCGGCTG
12304386 AGCGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
846 AGCGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
*
12304446 GCATACGAAGTTCATTCCTAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGTAGGATCGGCA
1 GCATACGAAGTTCATTCCTAGTCTAAGATTAGACCGGACCGAGGGTTGCGACAGTAGGATCGGCA
* * *
12304511 GCACGCAAGAGGGATCGGGCCGATCGCTAGCTTGCGCATTTTGCCTCTTCGGTCGGCTGAGCGCC
66 GCACGCAAGAGGGATCGGGCCGATCCCTAGCTTGCGCATTTTGCCTCTCCGATCGGCTGAGCGCC
12304576 CGCACGTC-CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAG
131 CGCACGTCACGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAG
12304640 TTCATTCCCAGTCCAATATTTTAAGCCACGGTGCACATGCTGGGCTCAAGCATGTGCTGGTGCCA
196 TTCATTCCCAGTCCAATATTTTAAGCCACGGTGCACATGCTGGGCTCAAGCATGTGCTGGTGCCA
12304705 TATTTTTTTCGCCGGGGCACCATGACCAGAGCATCGCCGGAGAGCCTAACCGACAGCATTGGGGG
261 TATTTTTTTCGCCGGGGCACCATGACCAGAGCATCGCCGGAGAGCCTAACCGACAGCATTGGGGG
12304770 TTCCGACGATTGGGGGGTAGGGGGTGTGTGCACATGATGTGTGATAGGTGCTGGTTGTTGGCCCT
326 TTCCGACGATTGGGGGGTAGGGGGTGTGTGCACATGATGTGTGATAGGTGCTGGTTGTTGGCCCT
12304835 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGAT
391 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGAT
12304900 TTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATTGGGACACTTTTTTCAAACGATCA
456 TTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATTGGGACACTTTTTTCAAACGATCA
12304965 CAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTGTTTTTTGCATGCCAACAAAAATACAAGGA
521 CAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTGTTTTTTGCATGCCAACAAAAATACAAGGA
12305030 TCACCTCTACCAAATTTGCAGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCGAACCTTAA
586 TCACCTCTACCAAATTTGCAGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCGAACCTTAA
12305095 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTCACATGAAGGCT
651 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTCACATGAAGGCT
*
12305160 TAGGGGACCATTGTATGAATTTACAAGCCATACAAAAAGGCATTGGCATGGCAGAAATATGAAGA
716 TAGGGGACCATTGTATGAATTTACAAGCCATA-AAAATGGCATTGGCATGGCAGAAATATGAAGA
* * * * *
12305225 TGCGCTTGAACCCACCTACCACCCGTTCGATCCCCAGCTT--GC-TTCTGCCTCTCTGGTCGGCT
780 TGTGCTCGAACCCACCGACCACCTGTTCGATCCCCAGCTTGCGCATCCTGCCTCTCTGGTCGGCT
* * ** * *
12305287 GAGCGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT-CCCTGATCTAA
845 GAGCGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAG-TCTAA
* * * *
12305348 GCATAC-AGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGTAGGATTGGT
1 GCATACGA-AGTTCATTCCTAGTCTAAGATTAGACCGGACCGAGGGTTGCGACAGTAGGATCGGC
* * ** * * * * *
12305412 AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTCAGTGC
65 AGCACGCAAGAGGGATCGGGCCGATCCCTAGCTTGCGCATTTTGCCTCTCCGATCGGCTGAGCGC
* * *
12305477 CCGCAC-ACACGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
130 CCGCACGTCACGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
12305524 TAGTCAAAGA
Statistics
Matches: 1870, Mismatches: 100, Indels: 39
0.93 0.05 0.02
Matches are distributed among these distances:
901 6 0.00
902 221 0.12
903 191 0.10
904 1136 0.61
905 68 0.04
906 1 0.00
907 1 0.00
908 1 0.00
915 11 0.01
916 166 0.09
917 68 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (905 bp):
GCATACGAAGTTCATTCCTAGTCTAAGATTAGACCGGACCGAGGGTTGCGACAGTAGGATCGGCA
GCACGCAAGAGGGATCGGGCCGATCCCTAGCTTGCGCATTTTGCCTCTCCGATCGGCTGAGCGCC
CGCACGTCACGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAG
TTCATTCCCAGTCCAATATTTTAAGCCACGGTGCACATGCTGGGCTCAAGCATGTGCTGGTGCCA
TATTTTTTTCGCCGGGGCACCATGACCAGAGCATCGCCGGAGAGCCTAACCGACAGCATTGGGGG
TTCCGACGATTGGGGGGTAGGGGGTGTGTGCACATGATGTGTGATAGGTGCTGGTTGTTGGCCCT
TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGAT
TTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATTGGGACACTTTTTTCAAACGATCA
CAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTGTTTTTTGCATGCCAACAAAAATACAAGGA
TCACCTCTACCAAATTTGCAGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCGAACCTTAA
AAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTCACATGAAGGCT
TAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGAT
GTGCTCGAACCCACCGACCACCTGTTCGATCCCCAGCTTGCGCATCCTGCCTCTCTGGTCGGCTG
AGCGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
Found at i:12306289 original size:367 final size:360
Alignment explanation
Indices: 12305658--12306995 Score: 1196
Period size: 367 Copynumber: 3.7 Consensus size: 360
12305648 CGTGGATTGG
* * * * *
12305658 CTTAGGCATATGGACTTCATTCC-ATGTCTAAGCATACGGAGTTAATTCCCAGTCTAAGATTATA
1 CTTAGGCATACGGAGTTCA-TCCTA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAA
*
12305722 CCGGACCGAGGGTTACGACAGTAGGACCAGCAGTAGGATCGACAGCACGCTGGGGGGGATC-AGG
64 CCGGACCGAGGGTT--G-C----GG--CAGCA--A-GATCGACAGCACGC-AGGGGGGATCGA-G
* * * * * * *
12305786 CTGATCCCCGCTTACGCATTCTACCTCTTCGATCGGTTGAGCGCCCGTACG-CTCGTTTCATGGG
115 CCGATCCCGGCTTACGCATTCTACCTCTCCGACCGATTGAGCGCCCGCACGCCT-GTTTCATGGA
* * * * * *
12305850 TTGGCTGAGGCATACAGAGTTCATTCCATGTCTAAGCCCTAG-TCAGGCCGAGGGTTATGGCAGC
179 TTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAACCCCAGCTCAGACCGAGGGTTGTGGCA--
*
12305914 AT--GACCGGCAGTGGGATCGGCAGCACGCAGAGGGGGATCGAGCTGATCCCCAACTTGCTCATT
242 ATGGGACCGGCAG-GGGATCGGCAGCACGCAGAGGGGGATCG-GCTGATCCCCAGCTTGCTCATT
*
12305977 ATGCCTCTTTGGTCGGCCTCTCCGGCCGGTTGAGCACCCGCTCGCTCATTTCGTGGGTGA
305 ATGCCTC-TT-GTCGGCCTCTCCGGCC-G-TGAGCGCCCGCTCGCTCATTTCGTGGGTGA
* **
12306037 CTTAGGCATACGGAGTTCATCCTTAGTCTAAGCATACGGAGTTCATTCCCAGTCCAAGATCGGAC
1 CTTAGGCATACGGAGTTCATCC-TAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAAC
* * *
12306102 CGGACCGAGGGTTGTGGCAGCAAGATCGGCAGCATGCAGGGGGGATCGAGCCGATGCCCGGCTTA
65 CGGACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGGGGGGATCGAGCCGAT-CCCGGCTTA
* * *
12306167 CGCATTCTACCTCTCCGACCGATTGAGCGCCCGCATGCCTGTTTCGTGGGTTGGCTTAGGCATAG
129 CGCATTCTACCTCTCCGACCGATTGAGCGCCCGCACGCCTGTTTCATGGATTGGCTTAGGCATAG
* * * * *
12306232 GGAGTTCATTCCTTGTCTAAGCCCTAGCT-GGACCGAGGGTTGTGGCAATGGGACCGGC-----A
194 AGAGTTCATTCCATGTCTAAACCCCAGCTCAGACCGAGGGTTGTGGCAATGGGACCGGCAGGGGA
* * * *
12306291 ---GCA-CA--CAGAGGGGGACCGGGTCGATCCCTAGCTTGCGCATTATGCCTC-T-TCGG----
259 TCGGCAGCACGCAGAGGGGGATCGGCT-GATCCCCAGCTTGCTCATTATGCCTCTTGTCGGCCTC
* * *
12306344 -CCGG-C-TCAGCGCCCGCACGCTCGTTTCGTGGGTTGA
323 TCCGGCCGTGAGCGCCCGCTCGCTCATTTCGTGGG-TGA
* ** *
12306380 CTTAGGCATACGGAGTTCATCCCTATTCTAAGCATAAAGAGTTCATTCCCAGTCTAAGATCGAAC
1 CTTAGGCATACGGAGTTCAT-CCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAAC
* * * * * *
12306445 CGGACCGAGGGTTGCGGCAGCAGGATCGACACCACGTA-GGGGGACCAAGCCGATCCCCGGCTTG
65 CGGACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGGGGGGATCGAGCCGAT-CCCGGCTTA
* ** * *
12306509 CGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGTTCAT-TTT-GTGGATTGGCTTAGGCAT
129 CGCATTCTACCTCTCCGACCGATTGAGCGCCCGCACG--CCTGTTTCATGGATTGGCTTAGGCAT
* * * *** *
12306572 AGAGAGTTCATTCCATGTCTAAACCCCA-ATCAGATCGAGGGTTGTGGTAGCAGGACCGACAGCG
192 AGAGAGTTCATTCCATGTCTAAACCCCAGCTCAGACCGAGGGTTGTGGCAATGGGACCGGCAG-G
* * * * * * *
12306636 GGATCGACAGCACGTAGAGGGGGAATGGGCTGATCCTCTGCTTGTTCATTATGCCTCTCCGTCCG
256 GGATCGGCAGCACGCAGAGGGGG-ATCGGCTGATCCCCAGCTTGCTCATTATGCCTCT-TGT-CG
* * * *
12306701 ACCTCTCCGGCCGACTGAGCGTCCG-TACGCTCATTTCATAGGTTGA
318 GCCTCTCCGGCCG--TGAGCGCCCGCT-CGCTCATTTCGT-GGGTGA
*
12306747 CTTAGGCATACGGAGTTCATCGCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAAC
1 CTTAGGCATACGGAGTTCATC-CTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAAC
* * * * * * * * *
12306812 CAGACCAAGGGTTGCGACAGCAGGATCGGCAGCACGCAAGGGGGATCGAGCTGATCCTCGACTTG
65 CGGACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGGGGGGATCGAGCCGATCC-CGGCTTA
* * * * **
12306877 CACATTCTACCTCTCCGGTCGGA-TGAGTGCCCGCACGCCCATTTCATGGATTGGCTTAGGCATA
129 CGCATTCTACCTCTCC-GACCGATTGAGCGCCCGCACGCCTGTTTCATGGATTGGCTTAGGCATA
* * *
12306941 GGGAGTTCATTCCATGTCTAAACCCCAG-TCAGACTGAGGGTTGTGGCAGTGGGAC
193 GAGAGTTCATTCCATGTCTAAACCCCAGCTCAGACCGAGGGTTGTGGCAATGGGAC
12306996 TGGTAGCACG
Statistics
Matches: 794, Mismatches: 116, Indels: 109
0.78 0.11 0.11
Matches are distributed among these distances:
341 1 0.00
342 141 0.18
343 95 0.12
344 4 0.01
345 1 0.00
346 4 0.01
348 1 0.00
351 6 0.01
352 2 0.00
353 1 0.00
354 31 0.04
355 39 0.05
357 3 0.00
358 5 0.01
361 1 0.00
363 4 0.01
364 1 0.00
365 2 0.00
366 16 0.02
367 238 0.30
368 118 0.15
369 3 0.00
370 5 0.01
372 2 0.00
377 1 0.00
378 3 0.00
379 65 0.08
380 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (360 bp):
CTTAGGCATACGGAGTTCATCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACC
GGACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCGGCTTACG
CATTCTACCTCTCCGACCGATTGAGCGCCCGCACGCCTGTTTCATGGATTGGCTTAGGCATAGAG
AGTTCATTCCATGTCTAAACCCCAGCTCAGACCGAGGGTTGTGGCAATGGGACCGGCAGGGGATC
GGCAGCACGCAGAGGGGGATCGGCTGATCCCCAGCTTGCTCATTATGCCTCTTGTCGGCCTCTCC
GGCCGTGAGCGCCCGCTCGCTCATTTCGTGGGTGA
Found at i:12306782 original size:26 final size:26
Alignment explanation
Indices: 12306752--12306804 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12306742 GTTGACTTAG
12306752 GCATACGGAGTTCA-TCGCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
12306778 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12306804 G
1 G
12306805 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.