Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 82 of 402
Found at i:12306982 original size:710 final size:711
Alignment explanation
Indices: 12305285--12307121 Score: 1983
Period size: 710 Copynumber: 2.6 Consensus size: 711
12305275 CTCTGGTCGG
* * * *
12305285 CTGAGCGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCTGATCTAAGC
1 CTGAGCGCCCGTACGCTCATTTCGT-GGTTGACTTAGGCATACGGAGTTCATCCCAG-TCTAAGC
* * * * * *
12305350 ATACAGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGTAGGATTGGTAGC
64 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGGCAGC
* * * * *
12305415 ACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCC-GACCAGCTCAGTGCCC
129 ACGCAGGGGGGATCGAGCCGAT-CCCGGCTTGCGCATTCTACCTCTCCGGA-CAGATGAGTGCCC
* * * * *** *
12305479 GCACACACGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTC-AAAGATTGGACCGG
192 GCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCT-GTCTAAACCCT--AGCGG
* *** * * * * *
12305543 A-TCAAGGGTTGTGGCAGCAAGATCGACAGCACGTAG-GGGGGATCGAGCTGA--CCTCGACTTG
254 ACT-GAGGGTTGTGGCAGTGGGACCGGCAGCACGCAGAGGGGGACCGGGC-GATCCCTCGACTTG
* * * * * * * * * *
12305604 CGCATTCTGCCTCTTCGATCGACTGAGTGCCCACAAGCTTGTTTCGTGGATTGGCTTAGGCATAT
317 CGCATTATGCCTCTTCGATCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * ** *
12305669 GGACTTCATTCCATGTCTAAGCATACGGAGTTAATTCCCAGTCTAAGATTATACCGGACCGAGGG
382 GGAGTTCATCCCATGTCTAAGCATAAAGAGTTAATTCCCAGTCTAAGATGATACCGGACCGAGGG
* * * * *
12305734 TTACGACAGTAGGACCAGCAGTAGGATCGACAGCACGCTGGGGGGGATCAGGCTGATCCCCGCTT
447 TTA-GAC---AGGA-CAGCA--AGGATCGACACCACGCTGAGGGGGACCAAGCCGATCCCCGCTT
* * * * * *
12305799 ACGCATTCTACCTCTTCGATCGGTTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTGAGGCATA
505 ACGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCATGGATTGGCTGAGGCATA
* * * * * * *
12305864 CAGAGTTCATTCCATGTCTAAGCCCTAGTCAGGCCGAGGGTTATGGCAGCATGACCGGCAGTGGG
570 CAGAGTTCATTCCATGTCTAAACCCCAATCAGACCGAGGGTTATGGCAGCAGGACCGACAGCGGG
* ** *
12305929 ATCGGCAGCACGCAGAGGGGGATCGAGCTGATCCCCAACTTGCTCATTATGCCTCTTTGGTCGGC
635 ATCGACAGCACGCAGAGGGGGATCGAGCTGATCCCCAACTTGCTCATTATGCCTCTTCCGTCGAC
*
12305994 CTCTCCGGCCGG
700 CTCTCCGGCCGA
* * * *
12306006 TTGAGCACCCGCT-CGCTCATTTCGTGGGTGACTTAGGCATACGGAGTTCATCCTTAGTCTAAGC
1 CTGAGCGCCCG-TACGCTCATTTCGTGGTTGACTTAGGCATACGGAGTTCATCC-CAGTCTAAGC
* * * * *
12306070 ATACGGAGTTCATTCCCAGTCCAAGATCGGACCGGACCGAGGGTTGTGGCAGCAAGATCGGCAGC
64 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGGCAGC
* * * *
12306135 ATGCAGGGGGGATCGAGCCGATGCCCGGCTTACGCATTCTACCTCTCC-GACCGATTGAGCGCCC
129 ACGCAGGGGGGATCGAGCCGAT-CCCGGCTTGCGCATTCTACCTCTCCGGACAGA-TGAGTGCCC
* * * *
12306199 GCATGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCTAGCTGGA
192 GCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCC-TGTCTAAACCCTAGC-GGA
* * * *
12306264 CCGAGGGTTGTGGCAATGGGACCGGCAGCACACAGAGGGGGACCGGGTCGATCCCTAG-CTTGCG
255 CTGAGGGTTGTGGCAGTGGGACCGGCAGCACGCAGAGGGGGACCGGG-CGATCCCTCGACTTGCG
**
12306328 CATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
319 CATTATGCCTCTTCGATCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
12306393 AGTTCATCCCTAT-TCTAAGCATAAAGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGG
384 AGTTCATCCC-ATGTCTAAGCATAAAGAGTTAATTCCCAGTCTAAGAT-GATACCGGACCGAGGG
*
12306456 TT-G-C-GG-CAGC-AGGATCGACACCACG-T-AGGGGGACCAAGCCGATCCCCGGCTTGCGCAT
447 TTAGACAGGACAGCAAGGATCGACACCACGCTGAGGGGGACCAAGCCGATCCCC-GCTTACGCAT
* * ** * *
12306514 TCTGCCTCTCCGACCGGCTGAGCGCCCGCACGTTCATTTTGTGGATTGGCTTAGGCATAGAGAGT
511 TCTACCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCATGGATTGGCTGAGGCATACAGAGT
* * *
12306579 TCATTCCATGTCTAAACCCCAATCAGATCGAGGGTTGTGGTAGCAGGACCGACAGCGGGATCGAC
576 TCATTCCATGTCTAAACCCCAATCAGACCGAGGGTTATGGCAGCAGGACCGACAGCGGGATCGAC
* * * ** *
12306644 AGCACGTAGAGGGGGAAT-GGGCTGATCCTCTGCTTGTTCATTATGCCTC-TCCGTCCGACCTCT
641 AGCACGCAGAGGGGG-ATCGAGCTGATCCCCAACTTGCTCATTATGCCTCTTCCGT-CGACCTCT
12306707 CCGGCCGA
704 CCGGCCGA
* *
12306715 CTGAGCGTCCGTACGCTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATCGCCAGTCTAAGC
1 CTGAGCGCCCGTACGCTCATTTCGT-GGTTGACTTAGGCATACGGAGTTCATC-CCAGTCTAAGC
* * *
12306780 ATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTGCGACAGCAGGATCGGCAGC
64 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGGCAGC
* * * * * *
12306845 ACGCAAGGGGGATCGAGCTGATCCTCGACTTGCACATTCTACCTCTCCGGTCGGATGAGTGCCCG
129 ACGCAGGGGGGATCGAGCCGATCC-CGGCTTGCGCATTCTACCTCTCCGGACAGATGAGTGCCCG
* * * *
12306910 CACGCCCATTTCATGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGTCAGAC
193 CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCC-TGTCTAAACCCTAG-CGGAC
* * *
12306975 TGAGGGTTGTGGCAGTGGGACTGGTAGCACGCAGAGGGGGACCGGGCCGATCCC-CGTCTTGCGC
256 TGAGGGTTGTGGCAGTGGGACCGGCAGCACGCAGAGGGGGACCGGG-CGATCCCTCGACTTGCGC
* * * * * *
12307039 ATTATGCCTCTTC-ATTCGGCTCAGCACCCGTACGCTCATTTCATGGGTTGACATAGGCATACGA
320 ATTATGCCTCTTCGA-TCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
12307103 AGTTCATTCCCA-GTCTAAG
384 AGTTCA-TCCCATGTCTAAG
12307122 ATCGGACCAA
Statistics
Matches: 932, Mismatches: 158, Indels: 63
0.81 0.14 0.05
Matches are distributed among these distances:
708 21 0.02
709 193 0.21
710 333 0.36
711 10 0.01
713 4 0.00
715 2 0.00
719 5 0.01
720 207 0.22
721 35 0.04
722 115 0.12
723 7 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (711 bp):
CTGAGCGCCCGTACGCTCATTTCGTGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGGCAGCAC
GCAGGGGGGATCGAGCCGATCCCGGCTTGCGCATTCTACCTCTCCGGACAGATGAGTGCCCGCAC
GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCTGTCTAAACCCTAGCGGACTGAGG
GTTGTGGCAGTGGGACCGGCAGCACGCAGAGGGGGACCGGGCGATCCCTCGACTTGCGCATTATG
CCTCTTCGATCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
CCCATGTCTAAGCATAAAGAGTTAATTCCCAGTCTAAGATGATACCGGACCGAGGGTTAGACAGG
ACAGCAAGGATCGACACCACGCTGAGGGGGACCAAGCCGATCCCCGCTTACGCATTCTACCTCTC
CGACCGGCTGAGCGCCCGCACGCTCATTTCATGGATTGGCTGAGGCATACAGAGTTCATTCCATG
TCTAAACCCCAATCAGACCGAGGGTTATGGCAGCAGGACCGACAGCGGGATCGACAGCACGCAGA
GGGGGATCGAGCTGATCCCCAACTTGCTCATTATGCCTCTTCCGTCGACCTCTCCGGCCGA
Found at i:12307302 original size:158 final size:158
Alignment explanation
Indices: 12306778--12307320 Score: 463
Period size: 158 Copynumber: 3.4 Consensus size: 158
12306768 GCCAGTCTAA
* ** * * ** * * * *
12306778 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCAGACCAAGGGTTGCGACAGCAGGATCGGC
1 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGTAGGATCGAC
* * * * * * *
12306842 AGCACGCAAGGGGGATCGAGCTGATCCTCGACTTGCACATTCTACCTCTCCGGTCGGA-TGAGTG
65 AGCACGCAGGGGGGATCGGGCTGATCCCCGACTTGCACATTCTGCCTCTCC-GACCGACTGAGCG
* *
12306906 CCCGCACGCCCATTTCATGGATTGGCTTAG
129 CCCGCACGCTCATTTCATGGGTTGGCTTAG
* * * **
12306936 GCATAGGGAGTTCATTCCATGTCTAAACCCCAGTCAGACTGAGGGTTGTGGCAGTGGGA-CTGGT
1 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGTAGGATC-GAC
* * * * * * * * *
12307000 AGCACGCAGAGGGGGACCGGGCCGATCCCCGTCTTGCGCATTATGCCTCTTC-ATTCGGCTCAGC
65 AGCACGCAG-GGGGGATCGGGCTGATCCCCGACTTGCACATTCTGCCTCTCCGA-CCGACTGAGC
* * * *
12307064 ACCCGTACGCTCATTTCATGGGTTGACATAG
128 GCCCGCACGCTCATTTCATGGGTTGGCTTAG
* * ** * * * *
12307095 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCGGACCAAACTGAGGATTGTGGTAGTAGGATCGA
1 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGGCAGTAGGATCGA
* * * *
12307158 CAGGACACAGGGGGGATCGGGCTGAACCCC-AGCTTGCACATTCTGCCTCTCCGACCGACTGAAC
64 CAGCACGCAGGGGGGATCGGGCTGATCCCCGA-CTTGCACATTCTGCCTCTCCGACCGACTGAGC
* *
12307222 GCCCGCAAGCTCGTTTCATGGGTTGGCTTAG
128 GCCCGCACGCTCATTTCATGGGTTGGCTTAG
* *
12307253 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA-TCGAGGGTTGTGGCAGCAAGATCGAC
1 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACT-GAGGGTTGTGGCAGTAGGATCGAC
12307317 AGCA
65 AGCA
12307321 GGTAGAGGGC
Statistics
Matches: 293, Mismatches: 79, Indels: 26
0.74 0.20 0.07
Matches are distributed among these distances:
157 8 0.03
158 168 0.57
159 113 0.39
160 4 0.01
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.22
Consensus pattern (158 bp):
GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGTAGGATCGACA
GCACGCAGGGGGGATCGGGCTGATCCCCGACTTGCACATTCTGCCTCTCCGACCGACTGAGCGCC
CGCACGCTCATTTCATGGGTTGGCTTAG
Found at i:12307465 original size:76 final size:76
Alignment explanation
Indices: 12307336--12307481 Score: 220
Period size: 76 Copynumber: 1.9 Consensus size: 76
12307326 AGGGCGCATT
* * * *
12307336 ATGCCTCTCTGGTAGGCACAACGCCCACACACTCGTTTCGTGGGTTGATTTAGGCATACGGAGTT
1 ATGCCTCTCTAGTAGGCACAACGCCCACACACTCATTTCGTGGGTTGACTTAGGCATACGAAGTT
12307401 CATTCTCAGCC
66 CATTCTCAGCC
* * * *
12307412 ATGCCTCTCTAGTCGGCTCAACGCTCGCACACTCATTTCGTGGGTTGACTTAGGCATACGAAGTT
1 ATGCCTCTCTAGTAGGCACAACGCCCACACACTCATTTCGTGGGTTGACTTAGGCATACGAAGTT
12307477 CATTC
66 CATTC
12307482 CCAGTCTAAG
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
76 62 1.00
ACGTcount: A:0.20, C:0.29, G:0.23, T:0.29
Consensus pattern (76 bp):
ATGCCTCTCTAGTAGGCACAACGCCCACACACTCATTTCGTGGGTTGACTTAGGCATACGAAGTT
CATTCTCAGCC
Found at i:12307507 original size:26 final size:26
Alignment explanation
Indices: 12307465--12307517 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12307455 GTTGACTTAG
12307465 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
12307491 GCATACGGAGTGT-ATTCCCAGTCTAA
1 GCATACGAAGT-TCATTCCCAGTCTAA
12307517 G
1 G
12307518 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12308347 original size:26 final size:26
Alignment explanation
Indices: 12308311--12308363 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12308301 GTTGACTTAG
*
12308311 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
12308337 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12308363 G
1 G
12308364 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12308390 original size:368 final size:360
Alignment explanation
Indices: 12307832--12308806 Score: 1011
Period size: 342 Copynumber: 2.7 Consensus size: 360
12307822 AATGAGGGTT
* * * * *
12307832 GCGGTAGCAGGATC-GACAGCACGCAG-GGGGGATCGGGTTGATCCCCGGCTTACGCATTCTGCC
1 GCGGTAGCAAGATCAG-CAGCACGCAGAGGGGGATCGGGTCGATCCCTGGATTGCGCATTCTGCC
** * * **
12307895 TCTCCTTTCGGTTGAGCGCCCGCACGCTCGTTTCGCAGGTTGGCTTAGGCATA-GAGAGTTCATT
65 TCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG-GAGTTCATT
* * * *
12307959 CCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGAATCGAGGGTTGCGGTAGC
129 CCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT-CGG-AGC
*
12308024 AGGACTAACAGCAAGATCGACAGCACGCAGGGGTGGATCGGGCCGATCCCTGGCTTGCGCATTCT
192 AGGACTAACAGCAAGATCGACAGCACGCAGGGG-GGATCGGGCCGATCCC-GGCTTACGCATTCT
* * * *
12308089 GCCTCTTCGG-CTGGTTGAGTG-CTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
255 GCCTCTCCGGTC-GGCTGAGCGCCT-GCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
* * **
12308152 TATTCCATGTGTAAGCCCCAGTCGAA-TCGAGGGTTGTGGCAGC
318 CATTCCATGTCTAAGCCCCAACCGAACT-GAGGGTTGTGGCAGC
* *
12308195 AGAATCGGTAGCAAGATCAGCAGCACGCAGAAGGGGG-TCGGGTCGATCCCTGGATGGCACATTC
1 -G---CGGTAGCAAGATCAGCAGCACGCAG-AGGGGGATCGGGTCGATCCCTGGATTGCGCATTC
* * *
12308259 TGCCTCTCCG-GCTGGCTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTT
61 TGCCTCTCCGATC-GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTT
* *
12308323 CA-TCCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG-TC--
125 CATTCCAT-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTCGG
* * **
12308384 -GC-GG--T---AGCAAGATCGACATCACGCAGGGGGGACCAAGCCGATCCCGGCTTACGCATTC
189 AGCAGGACTAACAGCAAGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCGGCTTACGCATTC
* * *
12308442 TGCCTCTCCGGTCGGCTGAGCGCCTGTACGCCCGTTTCATGGGTTGGCTTAGGGATAGGGAGTTC
254 TGCCTCTCCGGTCGGCTGAGCGCCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
*
12308507 ATTCCATGTCTAAGCCTCAACCGAACTGAGGGTTGTGGCAGC
319 ATTCCATGTCTAAGCCCCAACCGAACTGAGGGTTGTGGCAGC
* * * * * *
12308549 G-GG-A-C-CGA-CA--A-AATGCAGAGGGGGACCGGGTCGGTCCCCT--ACTTGCGTATTCTGC
1 GCGGTAGCAAGATCAGCAGCACGCAGAGGGGGATCGGGTCGAT-CCCTGGA-TTGCGCATTCTGC
** *
12308604 CTCTCCGATCGGCTGAGCGCTTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTTATT
64 CTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
* * *
12308669 TCATGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTATGGCAGC
129 CCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT-CGG-AGC
* * * ** * * *
12308734 AGAACCAACAGCAGGATCGGTAGCACGAAGGGGGGGAT-GGGTCGATCCCCGGCTTACGCATTGT
192 AGGACTAACAGCAAGATCGACAGCACGCA-GGGGGGATCGGGCCGAT-CCCGGCTTACGCATTCT
12308798 GCCTCTCCG
255 GCCTCTCCG
12308807 ATCAGCCTCT
Statistics
Matches: 511, Mismatches: 69, Indels: 71
0.78 0.11 0.11
Matches are distributed among these distances:
341 7 0.01
342 127 0.25
343 10 0.02
345 2 0.00
346 2 0.00
347 1 0.00
348 3 0.01
349 3 0.01
353 1 0.00
354 120 0.23
355 49 0.10
356 23 0.05
359 1 0.00
361 2 0.00
362 2 0.00
364 1 0.00
366 1 0.00
367 28 0.05
368 122 0.24
369 6 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (360 bp):
GCGGTAGCAAGATCAGCAGCACGCAGAGGGGGATCGGGTCGATCCCTGGATTGCGCATTCTGCCT
CTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
ATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTCGGAGCAGGA
CTAACAGCAAGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCGGCTTACGCATTCTGCCTCT
CCGGTCGGCTGAGCGCCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
GTCTAAGCCCCAACCGAACTGAGGGTTGTGGCAGC
Found at i:12309260 original size:26 final size:26
Alignment explanation
Indices: 12309231--12309283 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12309221 GTTGACTTAG
12309231 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12309257 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12309283 G
1 G
12309284 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12309766 original size:25 final size:26
Alignment explanation
Indices: 12309731--12309782 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
12309721 GTTAGCTTAG
12309731 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12309757 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12309782 G
1 G
12309783 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12310488 original size:26 final size:26
Alignment explanation
Indices: 12310451--12310501 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
12310441 GTTGACTTAG
12310451 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
12310477 GCATAC-AGAGTTCATTCTCAGTCTA
1 GCATACGA-AGTTCATCCCCAGTCTA
12310502 GGATCGGACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12310784 original size:159 final size:158
Alignment explanation
Indices: 12310477--12311189 Score: 591
Period size: 159 Copynumber: 4.5 Consensus size: 158
12310467 CCCAGTCTAA
* * * * * * * **
12310477 GCATACAGAGTTCATTCTCAGTCTAGGATCGGACCAGACCGAGTGTTACGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAG-CCGGACCGAGGGTTGTGGCAGCAGGATCGGCA
* * * * *
12310542 GCACGTAG-GG-GGACCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCAACTGAGCGC
65 ACACGTAGAGGAGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCTCAGCGC
* * * * *
12310605 CCGTACACCCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * *
12310634 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGATCAGC
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGGC
** * * * *
12310698 AACACGTAGAGGAGGACCGGGCCGATCCTTGACTTGCGGATTATGCCTCTTCGATCGGCTCAGCG
64 AACACGTAGAGGAGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCTCAGCG
* *
12310763 CCTGCACGCTTGTTTCATGGGTTGACTTAG
129 CCCGCACGCTCGTTTCATGGGTTGACTTAG
* *** * * * **
12310793 GCATACAGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGTGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAG-CCGGACCGAGGGTTGTGGCAGCAGGATCGGCA
* * * * * *
12310858 GCA--T-GCAGGAGGGATCGGGCCGATCCCCGGCTTGCG-ATTCTGCCTCTCCGGCCAGCTGAGC
65 ACACGTAG-AGGA-GGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCTCAGC
* * *
12310919 GCCCACACGCTCATTTCATGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * * * *
12310950 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAGCCGAACAGAGGGTTGTGGCAGCGGGACCGGT
1 GCATACGGAGTTCATTCCCA-GTCTAAGACC-AGCCGGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * * * * * *
12311014 AGCACGCAGAGGGGGACCGGGTCGATCCCAGGCTTGCGCATTATGCCTCTTCGACCGGCTCAACG
64 AACACGTAGAGGAGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCTCAGCG
* * *
12311079 CCCGTACGCTCGTTTCGTGGGTTGACTTAT
129 CCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * *
12311109 ACATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAG-AGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAG-CCGGACCGAGGGTTGTGGCAGCAGGATCGGCA
* *
12311173 GCACGTAG-GGGGGACCG
65 ACACGTAGAGGAGGACCG
12311190 AGGGTTCTTT
Statistics
Matches: 437, Mismatches: 103, Indels: 32
0.76 0.18 0.06
Matches are distributed among these distances:
156 6 0.01
157 159 0.36
158 63 0.14
159 202 0.46
160 7 0.02
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGGCAA
CACGTAGAGGAGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCTCAGCGCC
CGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:12311059 original size:316 final size:315
Alignment explanation
Indices: 12310477--12311189 Score: 910
Period size: 316 Copynumber: 2.3 Consensus size: 315
12310467 CCCAGTCTAA
* * * *
12310477 GCATACAGAGTTCATTCTCAGTCTAGGATCGGACCAGACCGAGTGTTACGGCAGCAGGATCGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
* *
12310542 GCACGTAGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCAACTGAGCGCCC
66 GCACGCAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAACTGAGCGCCC
* * * *
12310607 GTACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGA
131 G-ACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAA
* * * ** *
12310672 CCGAGGGTTGTGGCAGCGGGATCAGCAACACGTAGAGGAGGACCGGGCCGATCCTTGACTTGCGG
195 CAGAGGGTTGTGGCAGCGGGACCAGCAACACGCAGAGGAGGACCGGGCCGATCCCAGACTTGCGC
* * * *
12310737 ATTATGCCTCTTCGATCGGCTCAGCGCCTGCACGCTTGTTTCATGGGTTGACTTAG
260 ATTATGCCTCTTCGACCGGCTCAACGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * ** * *
12310793 GCATACAGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGTGGTAGCAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
* * * * *
12310858 GCATGCAGGAGGGATCGGGCCGATCCCCGGCTTGCG-ATTCTGCCTCTCCGGCCAGCTGAGCGCC
66 GCACGCAGG-GGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAACTGAGCGCC
*
12310922 C-ACACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCG
130 CGACAC-C-CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * * * * *
12310986 AACAGAGGGTTGTGGCAGCGGGACCGGTAGCACGCAGAGGGGGACCGGGTCGATCCCAGGCTTGC
193 AACAGAGGGTTGTGGCAGCGGGACCAGCAACACGCAGAGGAGGACCGGGCCGATCCCAGACTTGC
* * *
12311051 GCATTATGCCTCTTCGACCGGCTCAACGCCCGTACGCTCGTTTCGTGGGTTGACTTAT
258 GCATTATGCCTCTTCGACCGGCTCAACGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * * ** *
12311109 ACATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAG-AGGATTGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
*
12311173 GCACGTAGGGGGGACCG
66 GCACGCA-GGGGGACCG
12311190 AGGGTTCTTT
Statistics
Matches: 339, Mismatches: 54, Indels: 9
0.84 0.13 0.02
Matches are distributed among these distances:
314 4 0.01
315 20 0.06
316 292 0.86
317 23 0.07
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (315 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
GCACGCAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAACTGAGCGCCC
GACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAAC
AGAGGGTTGTGGCAGCGGGACCAGCAACACGCAGAGGAGGACCGGGCCGATCCCAGACTTGCGCA
TTATGCCTCTTCGACCGGCTCAACGCCCGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:12311828 original size:26 final size:26
Alignment explanation
Indices: 12311788--12311843 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
12311778 TGGGTTGGCT
*
12311788 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGAAGTTCATTCCCA-GTC
12311814 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
12311840 TAAG
1 TAAG
12311844 ATTTTAAGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:12312543 original size:26 final size:27
Alignment explanation
Indices: 12312506--12312560 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
12312496 CGTGGGTTGA
*
12312506 CTTAGGCATACGGAGTTCATCCCCAGT
1 CTTAGGCATACGAAGTTCATCCCCAGT
*
12312533 CTTA-GCATACGAAGTTCATTCCCAGT
1 CTTAGGCATACGAAGTTCATCCCCAGT
12312559 CT
1 CT
12312561 ATGATCGAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (27 bp):
CTTAGGCATACGAAGTTCATCCCCAGT
Found at i:12313048 original size:26 final size:26
Alignment explanation
Indices: 12313012--12313064 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12313002 GTTGGCTTAG
12313012 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
12313038 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
12313064 G
1 G
12313065 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:12313771 original size:26 final size:26
Alignment explanation
Indices: 12313735--12313787 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12313725 GTTGACTTAG
12313735 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
12313761 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
12313787 G
1 G
12313788 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:12314287 original size:342 final size:340
Alignment explanation
Indices: 12313713--12314630 Score: 1097
Period size: 342 Copynumber: 2.7 Consensus size: 340
12313703 CGCCCGCACG
* * * * *
12313713 CTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTC
1 CTCGTTTCGT-TGTTGACTTAGGCATACGGAGTTCAT-TCCAGTCTAAGCATACGAAGTTCATTC
* * * * * *
12313778 CCAGTCTAAGATCGGATCGGGCCGAGGGTTACTACAGCAGGATCGGCAGCACACAGGGGGGACCG
64 CCAGTCTAAGATCGGACCGGGCTGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACCG
* * * * *
12313843 GGTCAATCCCCAGCTTGCGGATTTTGCCTCTCCGGCCAGCTGAGCTCCCGCACACCCATTTCGTG
129 GGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCTCCCGCACGCCCATTTCGTG
* * * * *
12313908 GGTTGGCTTAGGCATATGGAGTTCATTCCACGTCTAAGCCGCAGCTGGACTGAGGGTTGTGGCAG
194 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAG
* ** * * *
12313973 CGGGACTGGCAGCACGCAG-AGAGGAACCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCCA
259 CGAGACCAGCAGCACGCAGAAG-GGAACCGGGCCGATCCCC-ACTTGCGCATTATGCCTCTCCCA
* *
12314037 TCGGCTCAGCCCTCGAACA
322 TCGACTCAGCCCCCGAACA
*
12314056 CTCGTTTCGTTAGTTGACTTAGGCATACGGAGTTCATTACCAGTCTAAGCGTACGAAGTTCATTC
1 CTCGTTTCGTT-GTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCATACGAAGTTCATTC
* * * * * * * **
12314121 CCAGTCTAAAATTGGACCAGGCTGAGGGTTGC-ATAGCAGGATCGATAGCACGTAGGGGGTAATG
64 CCAGTCTAAGATCGGACCGGGCTGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACCG
* * * * *
12314185 GGCCAATCCCCGGCTTGCGCATTCTGCCACTCTGGTCGGCTGAGCTCCCGCATGCCCATTTCGTG
129 GGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCTCCCGCACGCCCATTTCGTG
*
12314250 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAG
194 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAG
* * * ** *
12314315 CGAGACCAGCAGCACGCAGAAGGGGACTGGGCCGATCCCCACTTGCGTATTATGCCTCTCCGGTT
259 CGAGACCAGCAGCACGCAGAAGGGAACCGGGCCGATCCCCACTTGCGCATTATGCCTCTCCCATC
* *
12314380 GACTCAGCCCCCGCACG
324 GACTCAGCCCCCGAACA
* *
12314397 CTCATTTCGTGTGTTGACTTAGGCATACAGAGTTCATCTCCAGTCTAAGCATAC-AGAGTTCATT
1 CTCGTTTCGT-TGTTGACTTAGGCATACGGAGTTCAT-TCCAGTCTAAGCATACGA-AGTTCATT
12314461 -CCAGGTCTAAGATCGGACCGGGCTGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGAC
63 CCCA-GTCTAAGATCGGACCGGGCTGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGAC
* * * * * * * * * *
12314525 CGAGCCGATCCCCAGCTTGCGTATTCTACCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCA
127 CGGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCTCCCGCACGCCCATTTCG
* * **
12314590 TGGGTTGGCATAGGCATACTGAGTTTGTTCCATGTCTAAGC
192 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12314631 ATACGGAGTT
Statistics
Matches: 484, Mismatches: 83, Indels: 17
0.83 0.14 0.03
Matches are distributed among these distances:
340 4 0.01
341 113 0.23
342 282 0.58
343 85 0.18
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (340 bp):
CTCGTTTCGTTGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACGAAGTTCATTCCC
AGTCTAAGATCGGACCGGGCTGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACCGGG
CCAATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCTCCCGCACGCCCATTTCGTGGG
TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCG
AGACCAGCAGCACGCAGAAGGGAACCGGGCCGATCCCCACTTGCGCATTATGCCTCTCCCATCGA
CTCAGCCCCCGAACA
Found at i:12314455 original size:26 final size:26
Alignment explanation
Indices: 12314419--12314471 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12314409 GTTGACTTAG
12314419 GCATACAGAGTTCATCTCCA-GTCTAA
1 GCATACAGAGTTCAT-TCCAGGTCTAA
12314445 GCATACAGAGTTCATTCCAGGTCTAA
1 GCATACAGAGTTCATTCCAGGTCTAA
12314471 G
1 G
12314472 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 4 0.15
26 22 0.85
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAGGTCTAA
Found at i:12314675 original size:184 final size:184
Alignment explanation
Indices: 12314324--12314686 Score: 435
Period size: 184 Copynumber: 2.0 Consensus size: 184
12314314 GCGAGACCAG
* * * ***
12314324 CAGCACGCAGAAGGGGACTGGGCCGATCCCCACTTGCGTATTATGCCTCTCCGGTTGACTCAGCC
1 CAGCACGCAGAAGGGGACCGAGCCGATCCCCACTTGCGTATTATACCTCTCCGACCGACTCAGCC
* * *
12314389 CCCGCACGCTCATTTCGTGTGTTGACTTAGGCATACAGAGTTCATCTCCAGTCTAAGCATACAGA
66 CCCGCACGCTCATTTCATGGGTTGACATAGGCATACAGAGTTCATCTCCAGTCTAAGCATACAGA
* * * * * *
12314454 GTTCATTCCAGGTCTAAGATCGGACCGGGCTGAGGGTTGCGACAGCAGGATCGA
131 GTTCATTCCAGGTCCAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGA
* * *
12314508 CAGCACGCAG-GGGGGACCGAGCCGATCCCCAGCTTGCGTATTCTACCTCTCCGACCGACTGAGC
1 CAGCACGCAGAAGGGGACCGAGCCGATCCCCA-CTTGCGTATTATACCTCTCCGACCGACTCAGC
* * * * ** *
12314572 GCCCGCACGCTCGTTTCATGGGTTGGCATAGGCATACTGAGTTTGT-TCCATGTCTAAGCATACG
65 CCCCGCACGCTCATTTCATGGGTTGACATAGGCATACAGAGTTCATCTCCA-GTCTAAGCATACA
* *
12314636 GAGTTCATTCCTA-GTCCAAGATCAGATCAGACCGAGGGTTACGGCAGCAGG
129 GAGTTCATTCC-AGGTCCAAGATCAGACCAGACCGAGGGTTACGACAGCAGG
12314687 GCCAGCAGCA
Statistics
Matches: 149, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
183 22 0.15
184 126 0.85
185 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (184 bp):
CAGCACGCAGAAGGGGACCGAGCCGATCCCCACTTGCGTATTATACCTCTCCGACCGACTCAGCC
CCCGCACGCTCATTTCATGGGTTGACATAGGCATACAGAGTTCATCTCCAGTCTAAGCATACAGA
GTTCATTCCAGGTCCAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCGA
Found at i:12315003 original size:26 final size:26
Alignment explanation
Indices: 12314967--12315017 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12314957 TGACTTAGGC
12314967 ATACGGAGTTCA-TCCCTAGTCTAAGT
1 ATACGGAGTTCATTCCC-AGTCTAAGT
12314993 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
12315018 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:12315441 original size:26 final size:26
Alignment explanation
Indices: 12315392--12315444 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12315382 GTTAGCTTAG
*
12315392 GCATACGAAGTTCATTTCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
*
12315418 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGAAGTTCATT-CCATGTCTAA
12315444 G
1 G
12315445 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:12315530 original size:11 final size:11
Alignment explanation
Indices: 12315514--12315539 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
12315504 CCCGGGGCAC
12315514 CATCGTCGGAG
1 CATCGTCGGAG
12315525 CATCGTCGGAG
1 CATCGTCGGAG
12315536 CATC
1 CATC
12315540 ACCGGAGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:12316669 original size:158 final size:157
Alignment explanation
Indices: 12316188--12316670 Score: 468
Period size: 158 Copynumber: 3.1 Consensus size: 157
12316178 TAAGCATATA
** *
12316188 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGACAGTTGTGACAGCAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA
* * * * * * * * *
12316253 GAGGGGATCGGGTCAATCCCCAGCTTGCACATTCTACCTCTCCAGCCGGCTGAGCGCTCGCACGC
66 GGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCGA-CCGGCTGAGCGCCCGCACAC
* * * * * *
12316318 CCGTTTCGTAGGTTGGCTTAGGCATAGG
130 TCGTTTCATGGGTTGACTTAGACATACG
** * * **
12316346 GAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGA-CTGGTAGCAC
1 GAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATC-GACAGCAC
* ** * * **
12316408 GCAGGGGGGATCGGGCCGATCCCCGGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAACATCCGC
63 GCAGGGGGGATCGGGCCGATCCCC-GGCTTGCGCATTCTGCCTCT-CGACCGGCTGAGCGCCCGC
* *
12316473 ACAGTCGTTTCATGGGTTGACTTAGTCATACG
126 ACACTCGTTTCATGGGTTGACTTAGACATACG
* * * *
12316505 GAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTAGTGGCAGCAGGATCGACAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA
* * * * * * *
12316570 GGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCTGACCGACTGAGTGCCCGTACAT
66 GGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTC-GACCGGCTGAGCGCCCGCACAC
*
12316635 TCGTTTCATGGGTTGCCTTAGACATACG
130 TCGTTTCATGGGTTGACTTAGACATACG
*
12316663 AAGTTCAT
1 GAGTTCAT
12316671 ACCATGTCTA
Statistics
Matches: 257, Mismatches: 59, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
157 5 0.02
158 131 0.51
159 116 0.45
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA
GGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCGACCGGCTGAGCGCCCGCACACT
CGTTTCATGGGTTGACTTAGACATACG
Found at i:12316901 original size:26 final size:26
Alignment explanation
Indices: 12316865--12316917 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12316855 GTTGACTTAG
*
12316865 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGACTAA
* *
12316891 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACAGAGTTCATCCCCAGACTAA
12316917 G
1 G
12316918 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGACTAA
Found at i:12318432 original size:158 final size:158
Alignment explanation
Indices: 12317972--12318783 Score: 705
Period size: 159 Copynumber: 5.1 Consensus size: 158
12317962 GTCTAACCAA
* * **
12317972 ACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCAGGATCGGTAGCAC
1 ACGGAGTTCATTCCCAGTCTAAGATCCGATCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCAC
* * * * * *
12318037 GCAGGGGGGATCGGGTCGAT-CCTCGACTTGCGCATTCTGCCTCTTCGGTCGGCTGAGTGCCTGC
66 GCAGGGGGGATCGGGTCGATCCCT-GGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCGC
* *
12318101 ACGCCCATTTCGTGGGTTGGCTTAGGCAT
130 ACGCTCATTTCGTGGGTTGACTTAGGCAT
* * * ** * * *
12318130 A-GGCAGTTCATT-CCATGTCTAAG-CCCTAGTAGGACCGAGGGTTGTGGTAACGGGATCGACAG
1 ACGG-AGTTCATTCCCA-GTCTAAGATCCGA-TCGGACCGAGGGTTGCAGCAGCAGGATCGACAG
* * * * * * *
12318192 CATGCAGAGGGGGATCGGGCCAATCCCCGGCTTGTGCATTATGCCTCTCCGACCGGCTCAGCGCC
63 CACGCAG-GGGGGATCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCC
* * *
12318257 CGCATGCTCGTTTCGTGGGTTGACTTAGTCAT
127 CGCACGCTCATTTCGTGGGTTGACTTAGGCAT
* * * * * *
12318289 ATGGATTTCATTCCCAGTCGAAGATCGGATCGGATCGAGGGTTGCAGCAGTAGGATCGACAGCAC
1 ACGGAGTTCATTCCCAGTCTAAGATCCGATCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCAC
* * * * *
12318354 GCAGGGGGGACCGGGTCGATCCCTGGCTTGCTCATTTTCCCTCTCCGATCGGCTGAGCGCCCACA
66 GCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCA
12318419 CGCTCATTTCGTGGGTT-AGCTTAGGCAT
131 CGCTCATTTCGTGGGTTGA-CTTAGGCAT
* * * * * * ** *
12318447 ACGGAGATCATT-CCATGTGTAAG-CCCTAGCCAGACCGAGGGTTGTGGCAGCAAGATCGACAGC
1 ACGGAGTTCATTCCCA-GTCTAAGATCCGA-TCGGACCGAGGGTTGCAGCAGCAGGATCGACAGC
* * * * * *
12318510 ACGCAGTGAGGGATCAGGTCGATCCCTGGCTTGCGCATTATGCCTCTCC-AGCCGACTCAACGCC
64 ACGCAG-GGGGGATCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGA-TCGGCTGAGCGCC
* * * *
12318574 TGCACACTCATTTTGTGGGTTGACTTGGGCAT
127 CGCACGCTCATTTCGTGGGTTGACTTAGGCAT
* * * * * * *
12318606 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGTAGGATTGACTGTAC
1 ACGGAGTTCATTCCCAGTCTAAGATCCGATCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCAC
* * * * * * * ** *
12318671 GTA-GGGGGATCGAGCCGATTCAC-GACTTGCGCATTCTGCCTCT-CGGTCGATTGAGCGCCCAC
66 GCAGGGGGGATCGGGTCGA-TCCCTGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCGC
* * *
12318733 ACGCTCGTTTCGTGGGTTGGCTTGGGCAT
130 ACGCTCATTTCGTGGGTTGACTTAGGCAT
12318762 AC-GAGTTCATT-CCATGTCTAAG
1 ACGGAGTTCATTCCCA-GTCTAAG
12318784 CCCCAGTCGG
Statistics
Matches: 514, Mismatches: 121, Indels: 41
0.76 0.18 0.06
Matches are distributed among these distances:
154 3 0.01
155 16 0.03
156 38 0.07
157 42 0.08
158 170 0.33
159 230 0.45
160 15 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
ACGGAGTTCATTCCCAGTCTAAGATCCGATCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCAC
GCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCA
CGCTCATTTCGTGGGTTGACTTAGGCAT
Found at i:12318553 original size:317 final size:314
Alignment explanation
Indices: 12317972--12318812 Score: 1010
Period size: 317 Copynumber: 2.7 Consensus size: 314
12317962 GTCTAACCAA
* * **
12317972 ACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCAGGATCGGTAGCAC
1 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGA-CGAGGGTTGCAGCAGTAGGATCGACAGCAC
* **
12318037 GCAGGGGGGATCGGGTCGAT-CCTCGACTTGCGCATTCTGCCTCTTCGGTCGGCTGAGTGCCTGC
65 GCAGGGGGGATCGGGTCGATCCCT-GACTTGCGCATTCTGCCTC-TCGGTCGGCTGAGCGCCCAC
* *
12318101 ACGCCCATTTCGTGGGTTGGCTTAGGCATA-GGCAGTTCATTCCATGTCTAAGCCCTAGTAGGAC
128 ACGCTCATTTCGTGGGTTGGCTTAGGCATACGG-AGTTCATTCCATGTCTAAGCCCTAGCA-GAC
* ** * * * *
12318165 CGAGGGTTGTGGTAACGGGATCGACAGCATGCAGAGGGGGATCGGGCCAATCCCCGGCTTGTGCA
191 CGAGGGTTGTGGTAGCAAGATCGACAGCACGCAGAGAGGGATCAGGCCAATCCCCGGCTTGCGCA
* * ** * *
12318230 TTATGCCTCTCC-GACCGGCTCAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGTCAT
256 TTATGCCTCTCCAG-CCGACTCAACGCCCGCACACTCATTTCGTGGGTTGACTTAGGCAT
* * *
12318289 ATGGATTTCATTCCCAGTCGAAGATCGGATCGGATCGAGGGTTGCAGCAGTAGGATCGACAGCAC
1 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGA-CGAGGGTTGCAGCAGTAGGATCGACAGCAC
* * * * * *
12318354 GCAGGGGGGACCGGGTCGATCCCTGGCTTGCTCATTTTCCCTCTCCGATCGGCTGAGCGCCCACA
65 GCAGGGGGGATCGGGTCGATCCCTGACTTGCGCATTCTGCCTCT-CGGTCGGCTGAGCGCCCACA
* * *
12318419 CGCTCATTTCGTGGGTTAGCTTAGGCATACGGAGATCATTCCATGTGTAAGCCCTAGCCAGACCG
129 CGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAG-CAGACCG
* * * * *
12318484 AGGGTTGTGGCAGCAAGATCGACAGCACGCAGTGAGGGATCAGGTCGATCCCTGGCTTGCGCATT
193 AGGGTTGTGGTAGCAAGATCGACAGCACGCAGAGAGGGATCAGGCCAATCCCCGGCTTGCGCATT
* * *
12318549 ATGCCTCTCCAGCCGACTCAACGCCTGCACACTCATTTTGTGGGTTGACTTGGGCAT
258 ATGCCTCTCCAGCCGACTCAACGCCCGCACACTCATTTCGTGGGTTGACTTAGGCAT
* * * * *
12318606 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAGTAGGATTGACTGTAC
1 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC-GAGGGTTGCAGCAGTAGGATCGACAGCAC
* * * * **
12318671 GTA-GGGGGATCGAGCCGATTCAC-GACTTGCGCATTCTGCCTCTCGGTCGATTGAGCGCCCACA
65 GCAGGGGGGATCGGGTCGA-TCCCTGACTTGCGCATTCTGCCTCTCGGTCGGCTGAGCGCCCACA
* * * *
12318734 CGCTCGTTTCGTGGGTTGGCTTGGGCATAC-GAGTTCATTCCATGTCTAAGCCCCAGTCGGACCG
129 CGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAG-CAGACCG
*
12318798 AAGGTTGTGGTAGCA
193 AGGGTTGTGGTAGCA
12318813 GGACCGGTAG
Statistics
Matches: 444, Mismatches: 73, Indels: 17
0.83 0.14 0.03
Matches are distributed among these distances:
314 42 0.09
315 44 0.10
316 30 0.07
317 321 0.72
318 7 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (314 bp):
ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACGAGGGTTGCAGCAGTAGGATCGACAGCACG
CAGGGGGGATCGGGTCGATCCCTGACTTGCGCATTCTGCCTCTCGGTCGGCTGAGCGCCCACACG
CTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCAGACCGAGG
GTTGTGGTAGCAAGATCGACAGCACGCAGAGAGGGATCAGGCCAATCCCCGGCTTGCGCATTATG
CCTCTCCAGCCGACTCAACGCCCGCACACTCATTTCGTGGGTTGACTTAGGCAT
Found at i:12318979 original size:25 final size:26
Alignment explanation
Indices: 12318941--12318992 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
12318931 GTTGACTTAG
12318941 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
12318967 GCATAC-GAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
12318992 G
1 G
12318993 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:12319341 original size:26 final size:26
Alignment explanation
Indices: 12319304--12319356 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
12319294 GTTGGCTTAG
12319304 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12319330 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
12319356 G
1 G
12319357 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12322029 original size:12 final size:12
Alignment explanation
Indices: 12322012--12322036 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
12322002 ACTGGGGATT
12322012 TTATATTGGCCC
1 TTATATTGGCCC
12322024 TTATATTGGCCC
1 TTATATTGGCCC
12322036 T
1 T
12322037 CTGTCCCTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.16, T:0.44
Consensus pattern (12 bp):
TTATATTGGCCC
Found at i:12322543 original size:26 final size:26
Alignment explanation
Indices: 12322514--12322566 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12322504 GTTGACTTAG
* *
12322514 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
12322540 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
12322566 G
1 G
12322567 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:12322855 original size:159 final size:158
Alignment explanation
Indices: 12322630--12323064 Score: 534
Period size: 158 Copynumber: 2.7 Consensus size: 158
12322620 AAGCCAATCT
* * * * * *
12322630 CCGGCTTGTGCATTCTGCCACTCCGGTCGGTTGAGCGCCCGTACGCCTGTTTCACGGGTTGGCTT
1 CCGGCTTGTGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGGCTT
* * **
12322695 AGTCATAGGGAGTTCATTCCTTGTCTAAGCCTCAGCCGGACCAAGGGTTGTGGCAGCGAG-ATCG
66 AGGCATACGGAGTTCATTCCAAGTCTAAGCCTCAGCCGGACCAAGGGTTGTGGCAG-GAGAATCG
*
12322759 GCAGCATGCAGAGGGGGATCGAGTCGATCC
130 ACAGCATGCAG-GGGGGATCGAGTCGATCC
* * * * * *
12322789 CCGGCTTGTGCGTTATGCCTCTTCGGTCGGCTCAGCCCCCGCACGCTTGTTTCGTGGGTTGACTT
1 CCGGCTTGTGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGGCTT
* * * * * *
12322854 AGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAAACCGGACCAAGGGTTGCGGTAGTAGAATCG
66 AGGCATACGGAGTTCATTCCAAGTCTAAGCCTC-AGCCGGACCAAGGGTTGTGGCAGGAGAATCG
*
12322918 ACAGCATGCAGGGGGGATCGGGTCGATCC
130 ACAGCATGCAGGGGGGATCGAGTCGATCC
* * *
12322947 CCGACTTGCGCATTCTGCCT-TTCGAGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCT
1 CCGGCTTGTGCATTCTGCCTCTTCG-GTCGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGGCT
* * * *
12323011 TAGGCATACAGAGTTCATTCCAAGCCTAAGCCCCAGCCGGACCGAGGGTTGTGG
65 TAGGCATACGGAGTTCATTCCAAGTCTAAGCCTCAGCCGGACCAAGGGTTGTGG
12323065 TAGAAGGACT
Statistics
Matches: 232, Mismatches: 40, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
157 4 0.02
158 115 0.50
159 113 0.49
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (158 bp):
CCGGCTTGTGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGGCTT
AGGCATACGGAGTTCATTCCAAGTCTAAGCCTCAGCCGGACCAAGGGTTGTGGCAGGAGAATCGA
CAGCATGCAGGGGGGATCGAGTCGATCC
Found at i:12323013 original size:158 final size:155
Alignment explanation
Indices: 12322540--12323040 Score: 513
Period size: 159 Copynumber: 3.2 Consensus size: 155
12322530 CCCAGTCTAA
* * * * * *
12322540 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCAGCAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-AACCGGACCAAGGGTTGCGGC-AGAGAATCGACA
* * * * * * * * *
12322605 GCA--CATAGGGGGACCAAGCCAATCTCCGGCTTGTGCATTCTGCCACTCCGGTCGGTTGAGCGC
64 GCATGCA-GGGGGGATCGAGTCGATCCCCGGCTTGTGCATTCTGCC-TTTCGGTCGGCTGAGCGC
* *
12322668 CCGTACGC-CTGTTTCACGGGTTGGCTTAG
127 CCGCACGCTC-GTTTCATGGGTTGGCTTAG
* * ** * * * * *
12322697 TCATAGGGAGTTCATTCCTTGTCTAAGCCTCAGCCGGACCAAGGGTTGTGGCAGCGAGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAACCGGACCAAGGGTTGCGGCAGAGA-ATCGACA
* * * *
12322762 GCATGCAGAGGGGGATCGAGTCGATCCCCGGCTTGTGCGTTATGCCTCTTCGGTCGGCTCAGCCC
64 GCATGCAG-GGGGGATCGAGTCGATCCCCGGCTTGTGCATTCTGCCT-TTCGGTCGGCTGAGCGC
* * *
12322827 CCGCACGCTTGTTTCGTGGGTTGACTTAG
127 CCGCACGCTCGTTTCATGGGTTGGCTTAG
*
12322856 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTGCGGTAGTAGAATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-AACCGGACCAAGGGTTGCGGCAG-AGAATCGACA
* * *
12322921 GCATGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTTTCGAGTCGGCTGAGCGCC
64 GCATGCAGGGGGGATCGAGTCGATCCCCGGCTTGTGCATTCTGCCTTTCG-GTCGGCTGAGCGCC
12322986 CGCACGCTCGTTTCATGGGTTGGCTTAG
128 CGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
12323014 GCATACAGAGTTCATTCCAAGCCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
12323041 CCCCAGCCGG
Statistics
Matches: 278, Mismatches: 56, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
156 2 0.01
157 51 0.18
158 98 0.35
159 125 0.45
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAACCGGACCAAGGGTTGCGGCAGAGAATCGACAGC
ATGCAGGGGGGATCGAGTCGATCCCCGGCTTGTGCATTCTGCCTTTCGGTCGGCTGAGCGCCCGC
ACGCTCGTTTCATGGGTTGGCTTAG
Found at i:12323051 original size:158 final size:159
Alignment explanation
Indices: 12322634--12323883 Score: 556
Period size: 159 Copynumber: 7.6 Consensus size: 159
12322624 CAATCTCCGG
* * * * * * * *
12322634 CTTGTGCATTCTGCCACTCCGGTCGGTTGAGCGCCCGTACGC-CTGTTTCACGGGTTGGCTTAGT
1 CTTGCGCATTATGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTC-GTTTCATGGGTTGGCTTAGG
* ** * * * *
12322698 CATAGGGAGTTCATTCCTTGTCTAAGCCTCAGCCGGACCAAGGGTTGTGGCAGCGAGATCGGCAG
65 CATACGGAGTTCATTCCAAGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGTAGAGAGATCGACAG
*
12322763 CATGCAGAGGGGGATCGAGTCGATCCCCGG
130 CATGCAGAGGGGGATCGAGTCGATCCCCGA
* * * * * * *
12322793 CTTGTGCGTTATGCCTCTTCGGTCGGCTCAGCCCCCGCACGCTTGTTTCGTGGGTTGACTTAGGC
1 CTTGCGCATTATGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
* ** * * *
12322858 ATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTGCGGTAGTAGA-ATCGACAG
66 ATACGGAGTTCATTCCAAGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGTAG-AGAGATCGACAG
*
12322922 CATGCAG-GGGGGATCGGGTCGATCCCCGA
130 CATGCAGAGGGGGATCGAGTCGATCCCCGA
*
12322951 CTTGCGCATTCTGCCT-TTCGAGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
1 CTTGCGCATTATGCCTCTTCG-GTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* * *
12323015 CATACAGAGTTCATTCCAAGCCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGAAGGACTGACAG
65 CATACGGAGTTCATTCCAAGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGT---A-GA--G--A-
* * * * *
12323080 CGGGATCGACAGCACGTAGAGGGGGACCG-GGCTGATCCCCGG
121 ---GATCGACAGCATGCAGAGGGGGATCGAGTC-GATCCCCGA
* * *
12323122 CTTGCACATTATGCCTCTTCGGTCGACCTCTCCGGCCGGCTGAGCGTCTGCACGCTCGTTTCATG
1 CTTGCGCATTATGCCTCTTC-G--G-----T-----CGGCTGAGCGCCCGCACGCTCGTTTCATG
* * * ** * *** * ** *
12323187 GGTTGACTTAGGCATA-GGAAGTTCATCCCCAA-TCTCAGCATACGGAGTTCATTCCCAGTCTAA
53 GGTTGGCTTAGGCATACGG-AGTTCAT-TCCAAGTCTAAGC---CCCAG-CCGGACCAAGGGT-T
* * * * *
12323250 GATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACACAGGGGGGA-CCAGGCCGATT
111 G-T-GG-T---A--GAGAGAT-CGACAGC---AT-G-CAG-----A-GGGGGATCGA-GTCGATC
* *
12323314 CTCAA
155 CCCGA
* * ** * * * * * *
12323319 CTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGAACACCCGTTTCGTGGGTTGGCTTACGC
1 CTTGCGCATTATGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
* * *** * * * *
12323384 AT-CGGGAGTTCATTCCATG-CTAAGCCCCAGCTGGATTGAGGGTTGTGGCAGCGGGATCGGCAG
66 ATAC-GGAGTTCATTCCAAGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGTAGAGAGATCGACAG
* * * *
12323447 CATGCAG-GGGGGATCGGGCCGATCCCTGG
130 CATGCAGAGGGGGATCGAGTCGATCCCCGA
* * * * ** * * **
12323476 CTTGCACATTCTGCCTCTCCGGTCGGATGATTGCCCACACGCCCGTTTTGTGGGTTGGCTTAGGC
1 CTTGCGCATTATGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
* * * * * * * * * * *
12323541 ATAGGGAGTTTA-TCCATGTGTAAGCTCCAGCTGGGCCGAGGGTTGTGGCAGCGGGA-CAGACAG
66 ATACGGAGTTCATTCCAAGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGTAGAGAGATC-GACAG
* * * * *
12323604 CATGTAAAGGTGGATCGAGCCGATCCCCGG
130 CATGCAGAGGGGGATCGAGTCGATCCCCGA
* * * * * *
12323634 CTTGCGTATTATGCCTC-TCTGGCCAGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
1 CTTGCGCATTATGCCTCTTC-GGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* ** * * * * ** *
12323698 CATACGGAGTTCATTCCCAGTCTAAG-ATCGGATCGGACCGAGGGTTGCGACAGTAG-GATCGAT
65 CATACGGAGTTCATTCCAAGTCTAAGCCCCAG-CCGGACCAAGGGTTGTGGTAG-AGAGATCGAC
* * *
12323761 AGCATGCA-AGGGGAGATCGGGTCAATCCTCGA
128 AGCATGCAGAGGGG-GATCGAGTCGATCCCCGA
* * ** * *
12323793 CTTGTGCATTCTGCCT-TTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTGGG
1 CTTGCGCATTATGCCTCTT-CGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* *
12323857 CATATGGAGTTCATTCCATGTCTAAGC
65 CATACGGAGTTCATTCCAAGTCTAAGC
12323884 GTACGGAGTT
Statistics
Matches: 825, Mismatches: 193, Indels: 145
0.71 0.17 0.12
Matches are distributed among these distances:
156 7 0.01
157 123 0.15
158 198 0.24
159 232 0.28
160 5 0.01
161 2 0.00
162 1 0.00
163 1 0.00
164 3 0.00
165 2 0.00
166 2 0.00
169 6 0.01
170 20 0.02
171 30 0.04
172 4 0.00
173 1 0.00
174 1 0.00
176 2 0.00
177 1 0.00
178 1 0.00
179 4 0.00
180 3 0.00
183 9 0.01
184 96 0.12
185 8 0.01
186 7 0.01
187 3 0.00
188 6 0.01
189 2 0.00
190 2 0.00
191 5 0.01
192 3 0.00
193 2 0.00
196 3 0.00
197 28 0.03
198 2 0.00
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
CTTGCGCATTATGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
ATACGGAGTTCATTCCAAGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGTAGAGAGATCGACAGC
ATGCAGAGGGGGATCGAGTCGATCCCCGA
Found at i:12323866 original size:159 final size:159
Alignment explanation
Indices: 12323224--12323882 Score: 604
Period size: 157 Copynumber: 4.2 Consensus size: 159
12323214 CCCAATCTCA
* *
12323224 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGCAGCTGGACCGAGGGTTGCGACAGCAGGATCGAC
* * * * *
12323288 AGCA--CACAGGGGGGACCAGGCCGATTCTCAACTTGCGCATTCTGCCTCTCCGACCGGCTGAGT
65 AGCATGCA-AGGGGGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* * *
12323351 GCCCGAACACCCGTTTCGTGGGTTGGCTTAC
129 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
* * ** * * * *
12323382 GCAT-CGGGAGTTCATTCCA-TGCTAAG-CCCCAGCTGGATTGAGGGTTGTGGCAGCGGGATCGG
1 GCATAC-GGAGTTCATTCCAGT-CTAAGATCGCAGCTGGACCGAGGGTTGCGACAGCAGGATCGA
* * ** * *
12323444 CAGCATGC-AGGGGGGATCGGGCCGATCC-CTGGCTTGCACATTCTGCCTCTCCGGTCGGATGAT
64 CAGCATGCAAGGGGGGATCGGGCCGATCCTC-GACTTGCGCATTCTGCCTCTCCGACCGGCTGAG
* * *
12323507 TGCCCACACGCCCGTTTTGTGGGTTGGCTTAG
128 CGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
* * * * * * * *
12323539 GCATAGGGAGTTTA-TCCATGTGTAAGCTC-CAGCTGGGCCGAGGGTTGTGGCAGCGGGA-CAGA
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGCAGCTGGACCGAGGGTTGCGACAGCAGGATC-GA
* * * * * * * * * * * *
12323601 CAGCATGTAAAGGTGGATCGAGCCGATCCCCGGCTTGCGTATTATGCCTCTCTGGCCAGCTCAGC
64 CAGCATGCAAGGGGGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* *
12323666 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
129 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
* * * *
12323697 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGACAGTAGGATCGAT
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGCAGCTGGACCGAGGGTTGCGACAGCAGGATCGAC
* * * * *
12323761 AGCATGCAAGGGGAGATCGGGTCAATCCTCGACTTGTGCATTCTGCCTTTCCGACCGGCTGAGCG
65 AGCATGCAAGGGGGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* *
12323826 CCCGCACGCTCGTTTCGTGGGTTGGCTTGG
130 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
*
12323856 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
12323883 CGTACGGAGT
Statistics
Matches: 400, Mismatches: 83, Indels: 35
0.77 0.16 0.07
Matches are distributed among these distances:
156 10 0.03
157 155 0.39
158 99 0.25
159 130 0.32
160 6 0.01
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGCAGCTGGACCGAGGGTTGCGACAGCAGGATCGACA
GCATGCAAGGGGGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
CCGCACGCCCGTTTCGTGGGTTGGCTTAG
Found at i:12324031 original size:185 final size:185
Alignment explanation
Indices: 12323700--12324068 Score: 445
Period size: 185 Copynumber: 2.0 Consensus size: 185
12323690 GACTTAGGCA
* * * * *
12323700 TACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGTAGGATCGATAGCA
1 TACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAAGGTTACGACAGCAAGATCGATAGCA
* * * * * *
12323765 TGCAAGGGGAGATCGGGTCAATCCTCGACTTGTGCATTCTGCCTTTCCGACCGGCTGAGCGCCCG
66 CGCAAGGGGAGACCGGCTCAACCCTCGACTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCCCG
* * * * **
12323830 CACGCTCGTTTCGTGGGTTGGCTTGGGCATATGGAGTTCATTCCATGTCTAAGCG
131 CACGCTCATTTCGTGGGTTAGCTTAGCCATACAGAGTTCATTCCATGTCTAAGCG
* * *
12323885 TACGGAGTTCATTCCTAGTCTAAGATCGTG-TCAGACCGAAGGTTACGGCAGCAAGATCGGTAGC
1 TACGGAGTTCATTCCCAGTCTAAGATCG-GATCAGACCGAAGGTTACGACAGCAAGATCGATAGC
* * * * * * *
12323949 ACGCAGGGGGGGACCAGGCTGACCCCT-GGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGTGCC
65 ACGCAAGGGGAGACC-GGCTCAACCCTCGACTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCC
* *
12324013 CGCTCGCTCATTTCGTGGGTTAGCTTAGCCATACAGAGTTTATTCCATGTCTAAGC
129 CGCACGCTCATTTCGTGGGTTAGCTTAGCCATACAGAGTTCATTCCATGTCTAAGC
12324069 CCCAGTCGGA
Statistics
Matches: 153, Mismatches: 29, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
185 145 0.95
186 8 0.05
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (185 bp):
TACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAAGGTTACGACAGCAAGATCGATAGCA
CGCAAGGGGAGACCGGCTCAACCCTCGACTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCCCG
CACGCTCATTTCGTGGGTTAGCTTAGCCATACAGAGTTCATTCCATGTCTAAGCG
Found at i:12324755 original size:26 final size:26
Alignment explanation
Indices: 12324725--12324777 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12324715 GTTGACTTAG
*
12324725 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12324751 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12324777 G
1 G
12324778 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12325061 original size:26 final size:26
Alignment explanation
Indices: 12325025--12325074 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
12325015 GACTTAGGCA
*
12325025 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGGAGTTCATCCCCAATCTAAGCG
*
12325051 TACGGAGTTCATTCCCAATCTAAG
1 TACGGAGTTCATCCCCAATCTAAG
12325075 ATCAGATCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAATCTAAGCG
Found at i:12325376 original size:159 final size:158
Alignment explanation
Indices: 12325176--12325549 Score: 407
Period size: 158 Copynumber: 2.4 Consensus size: 158
12325166 CGGCTAAGCA
* * * *
12325176 CCCGCACACCCGTTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAA-ACCCCAAC
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCCAAC
** ** ** * * * *
12325240 TGGACTGAGGGTTG-TGGCAGCGGGACCTG-CAGCACGTAGAGGGAGACTGGGTCGATCCCCGGC
66 -AAACCAACAGTTGCT-GCAGCAGGACC-GACAACACGTAG-GGGAGACCGGGCCGATCCCCGGC
* *
12325303 TTGCGCATTATGCCTCTTCGGCCAGCTTAGCAG
127 TTACGCATTATGCCTCTTCGACCAGCTTAGC-G
* * * * * * ** *
12325336 -CCGTACGTTCGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCACA-GTCTAAGATCGGAT
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGACCCCAA
* *
12325399 CAAACCAACAGTTGCTGCAGCAGGATCGACAACACGTAGGGGGGACCGGGCCGATCCCCGGCTTA
65 CAAACCAACAGTTGCTGCAGCAGGACCGACAACACGTAGGGGAGACCGGGCCGATCCCCGGCTTA
*
12325464 CGCATTCTGCCTCTTCGACCAGCTTAGCG
130 CGCATTATGCCTCTTCGACCAGCTTAGCG
12325493 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
12325550 CATACGGAGT
Statistics
Matches: 175, Mismatches: 33, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.02
158 97 0.55
159 68 0.39
160 7 0.04
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCCAAC
AAACCAACAGTTGCTGCAGCAGGACCGACAACACGTAGGGGAGACCGGGCCGATCCCCGGCTTAC
GCATTATGCCTCTTCGACCAGCTTAGCG
Found at i:12325559 original size:26 final size:26
Alignment explanation
Indices: 12325523--12325575 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12325513 GTTGGCTTAG
12325523 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12325549 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12325575 G
1 G
12325576 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12326721 original size:158 final size:157
Alignment explanation
Indices: 12326279--12326762 Score: 478
Period size: 158 Copynumber: 3.1 Consensus size: 157
12326269 TAAGCATACA
* * * * *
12326279 GAGTTCATTCCTAATCTAAGATCGGATCAGACCGAGGGTTGCGACAGCAGGATCGATAGCACGCA
1 GAGTTCATTTCTAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAGCAGGATCGACAGCACGCA
* * * * * * * * * * * *
12326344 GGGGGGATTGGGCCGATCCCCAGCTTGCGCGTTCTGCCTCTCCGGCCAGTTGAGCGACCGCAAGC
66 GGGGGGATCGGGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCCCACACGC
12326409 -CTGTTTCGTGGGTTGCTTTAGGCATAG-G
131 TC-GTTTCGTGGGTTGC-TTAGGCAT-GCG
* * * ** * * * *
12326437 GAGTTCA-TTCCATGTTTAAG-CCCTAGCCAGA-TCGAGGGTTGTGGCAGCGGGACCGACAGCAC
1 GAGTTCATTTCTA-GTCTAAGATCGGA-CCAGACT-GAGGGTTGCGACAGCAGGATCGACAGCAC
* * * * * *
12326499 GCAGAGGGGGA-CTGGGTCGGTCCTCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGTGCCCA
63 GCAG-GGGGGATC-GGGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCCCA
12326563 CACGCTCGTTTCGTGGGTTGACTTAGGCATGCG
126 CACGCTCGTTTCGTGGGTTG-CTTAGGCATGCG
* * **
12326596 GAGTTCATTTCTAGTCTAAGATCGGACCGGACTGAGGGTTGCAAC-GACAGGATCGACAGCACAT
1 GAGTTCATTTCTAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAG-CAGGATCGACAGCACGC
12326660 AGGGGGGATCGGGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCCCACACG
65 AGGGGGGATCGGGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCCCACACG
* *
12326725 CTCGTTTCATGGGTTGGCTTAGGCATACG
130 CTCGTTTCGTGGGTT-GCTTAGGCATGCG
12326754 GAGTTCATT
1 GAGTTCATT
12326763 CCATGTCTAA
Statistics
Matches: 260, Mismatches: 52, Indels: 28
0.76 0.15 0.08
Matches are distributed among these distances:
157 5 0.02
158 135 0.52
159 111 0.43
160 9 0.03
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (157 bp):
GAGTTCATTTCTAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAGCAGGATCGACAGCACGCA
GGGGGGATCGGGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCCCACACGC
TCGTTTCGTGGGTTGCTTAGGCATGCG
Found at i:12326777 original size:26 final size:26
Alignment explanation
Indices: 12326747--12326799 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12326737 GTTGGCTTAG
12326747 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCAT-TCTAA
12326773 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
12326799 G
1 G
12326800 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:12327626 original size:157 final size:156
Alignment explanation
Indices: 12327141--12327641 Score: 447
Period size: 159 Copynumber: 3.2 Consensus size: 156
12327131 CCCAGTCTAA
* * * *
12327141 GCATACGAAGTTCATTTGCA-GTCTAAGATCAGACCAGA-TCGAGGGTTGCGGCAGCAGGATCGA
1 GCATACGGAGTTCA-TTCCACGTCTAAGATCAGACCGGACT-GAGGGTTGTGGCAGCAGGATCGA
* * * * * * *
12327204 CAGCACGTAGGGGGGATCAGACCGATCCCCAGCTTGCACATTCTGCCTCACC-AGCCGACTGAGT
64 CAACACGCA-GGGGGA-CCGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGA-CCGACTGAGC
*
12327268 GCCCGCACG-TCCGTTTCATGGGTTGGCTTAG
126 GCCCGCACGCT-CGTTTCGTGGGTTGGCTTAG
* * * ** * * * ** *
12327299 GCATAGGGAGTTCATTTCATGTCTAAGCCCCAG-TCGGACTAAGGGTTGTGGAAGTGGGATCGGC
1 GCATACGGAGTTCATTCCACGTCTAAG-ATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGAC
** * * * * * ** * *
12327363 AACACGCAGAAGGGGACCGAGTTGATCCCTGACTTGCCCATTATGCCTCTTCGGTCGGCTCAGCG
65 AACACGCAG--GGGGACCG-GCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGACTGAGCG
* * * *
12327428 CTCGCACTCTCGTTTCGTGGGTTGACTTAT
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
12327458 GCATACAGAGTTAATTCC-CAGTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAC-GTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGAC
* * *
12327522 AACACGCAGGGGAGACCGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGATTGAGCGCC
65 AACACGCAGGGG-GACCGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGACTGAGCGCC
*
12327587 CGCACGCTCGTCTCGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
12327615 GCATACGGAGTTCATTCCACGTCTAAG
1 GCATACGGAGTTCATTCCACGTCTAAG
12327642 CGTACGGAGT
Statistics
Matches: 261, Mismatches: 70, Indels: 25
0.73 0.20 0.07
Matches are distributed among these distances:
157 88 0.34
158 56 0.21
159 116 0.44
160 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCACGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
ACACGCAGGGGGACCGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGACTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12327665 original size:26 final size:26
Alignment explanation
Indices: 12327618--12327667 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
12327608 GGCTTAGGCA
*
12327618 TACGGAGTTCATTCCACGTCTAAGCG
1 TACGGAGTTCATTCCACATCTAAGCG
12327644 TACGGAGTTCATTCC-CAATCTAAG
1 TACGGAGTTCATTCCAC-ATCTAAG
12327668 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCACATCTAAGCG
Found at i:12328357 original size:26 final size:26
Alignment explanation
Indices: 12328328--12328380 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12328318 GTTGACTTAG
12328328 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
12328354 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12328380 G
1 G
12328381 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12328645 original size:158 final size:160
Alignment explanation
Indices: 12328437--12329173 Score: 681
Period size: 159 Copynumber: 4.6 Consensus size: 160
12328427 GGTGGACCGG
* * * * * *
12328437 GTCGATCTCCGGCTTACGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
1 GTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACACTCGTTTCATGG
* * * * * * *
12328502 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGATCGAGTGTTATGGTAG
66 GTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAG
* *
12328566 TGGGACCGATAGCACACAGAGGGGGATCGA
131 TAGGACCGATAGCACGCAGAGGGGGATCGA
* * * *
12328596 GTCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGGCTCAGCG-CCGCACACTCGTTTCATGG
1 GTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACACTCGTTTCATGG
* * * *
12328660 GTTGACTTAGGCATACGAAGTTCATTGCCA-GTCTAAG-ATCAGATCGGATCGAGGGTTGTGGCA
66 GTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCA
* ** * * * * *
12328723 CTAGGATTGGTAGCACGTAG-GAGGGACCGG
130 GTAGGACCGATAGCACGCAGAGGGGGATCGA
* * * * ** *
12328753 GCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGTGCCCGCACGTTCATTTCATGG
1 GTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACACTCGTTTCATGG
* * * * *
12328818 GTTGGCTTAGGCATAGGGCGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAG
66 GTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAG
* *
12328882 TGGGACCGATAGCACGTAGAGGGGGATCG-
131 TAGGACCGATAGCACGCAGAGGGGGATCGA
* * * * * * ** * * *
12328911 GGCTGATCCCCGACTTACGCATTATGCCTCTTC-AGCCAACTCAGCGCCCGCATC-CTCATTTCG
1 GTC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGA-TCGGCTGAGCGCCCGCA-CACTCGTTTCA
* *
12328974 TGGGTTGACTTATGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACCGGACCGAGGGTTGTG
63 TGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCGGACCGAGGGTTGTG
* * * * * *
12329037 GTAGCAGCATCGACAGCACGCAGTGGGGGATCGA
127 GCAGTAGGACCGATAGCACGCAGAGGGGGATCGA
** * * *
12329071 G-CTGATCCTTGGCTTGCACATTCTGCCTCTCTGATCGGCTGAGCACCCGCACACTCGTTTCATG
1 GTC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACACTCGTTTCATG
* *
12329135 GGTTGACTTAGGCATACAGAGTTCA-TCCCTAGTCTAAGC
65 GGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGC
12329174 GCATAGAGTT
Statistics
Matches: 462, Mismatches: 100, Indels: 31
0.78 0.17 0.05
Matches are distributed among these distances:
157 50 0.11
158 165 0.36
159 244 0.53
160 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.29, T:0.25
Consensus pattern (160 bp):
GTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACACTCGTTTCATGG
GTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAG
TAGGACCGATAGCACGCAGAGGGGGATCGA
Found at i:12328935 original size:316 final size:315
Alignment explanation
Indices: 12328354--12329173 Score: 988
Period size: 316 Copynumber: 2.6 Consensus size: 315
12328344 CCCAGTCTAA
* * ** *
12328354 GCATAC-AGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGATTACGGCAGCAAGATCGGT
1 GCATACGA-AGTTCATT-CCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCAGGATCGGT
* * * * *
12328418 AGCACGTAGGGTGGACCGGGTCGATCTCCGGCTTACGCATTCTACCTCTCCGGTCGGCTGAGCGC
64 AGCACGTAGGG-GGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGC
*
12328483 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
128 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * * * **
12328548 GATCGAGTGTTATGGTAGTGGGACCGATAGCACACAGAGGGGGATCGAGTCGATCCCCGGCTTGT
193 GACCGAGGGTTATGGCAGTGGGACCGATAGCACACAGAGGGGGATCGAGTCGATCCCCGACTTAC
** *
12328613 GCATTATGCCTCTCC-GACCGGCTCAGCG-CCGCA-CACTCGTTTCATGGGTTGACTTAG
258 GCATTATGCCTCTCCAG-CCAACTCAGCGCCCGCATC-CTCATTTCATGGGTTGACTTAG
*
12328670 GCATACGAAGTTCATTGCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGCA-CTAGGATTGGT
1 GCATACGAAGTTCATT-CCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGC-AGGATCGGT
*
12328734 AGCACGTAGGAGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGTGC
64 AGCACGTAGG-GGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGC
* * * *
12328799 CCGCACGTTCATTTCATGGGTTGGCTTAGGCATAGGGCGTTCATTCCATGTCTAAGCCCCAGTCG
128 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* ** *
12328864 GACCGAGGGTTGTGGCAGTGGGACCGATAGCACGTAGAGGGGGATCG-GGCTGATCCCCGACTTA
193 GACCGAGGGTTATGGCAGTGGGACCGATAGCACACAGAGGGGGATCGAGTC-GATCCCCGACTTA
* * *
12328928 CGCATTATGCCTCTTCAGCCAACTCAGCGCCCGCATCCTCATTTCGTGGGTTGACTTAT
257 CGCATTATGCCTCTCCAGCCAACTCAGCGCCCGCATCCTCATTTCATGGGTTGACTTAG
* * * * * **
12328987 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGCATCGACA
1 GCATACGAAGTTCATTCC-AGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCAGGATCGGTA
* * * * ** * * *
12329052 GCACGCAGTGGGGGATCGAGCTGATCCTTGGCTTGCACATTCTGCCTCTCTGATCGGCTGAGCAC
65 GCACGTA--GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGC
* * ** *
12329117 CCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCA-TCCCTAGTCTAAGC
128 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT-GTCTAAGC
12329174 GCATAGAGTT
Statistics
Matches: 432, Mismatches: 60, Indels: 22
0.84 0.12 0.04
Matches are distributed among these distances:
315 3 0.01
316 247 0.57
317 89 0.21
318 91 0.21
319 2 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (315 bp):
GCATACGAAGTTCATTCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCAGGATCGGTAG
CACGTAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
CGAGGGTTATGGCAGTGGGACCGATAGCACACAGAGGGGGATCGAGTCGATCCCCGACTTACGCA
TTATGCCTCTCCAGCCAACTCAGCGCCCGCATCCTCATTTCATGGGTTGACTTAG
Found at i:12329343 original size:184 final size:185
Alignment explanation
Indices: 12328994--12329357 Score: 473
Period size: 184 Copynumber: 2.0 Consensus size: 185
12328984 TATGCATACG
* * *
12328994 GAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGCATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGCATCGACAGCACGCA
* * * * *
12329059 GTGGGGGATCGAGCTGATCCTTGGCTTGCACATTCTGCCTCTCTGATCGGCTGAGCACCCGCACA
66 GTGGGGGATCGAGCTGATCCCTGGCTTGCACATTCTCCCTCTCCGACCAGCTGAGCACCCGCACA
*
12329124 CTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCC-TAGTCTAAGCGCATA
131 CTCGTTTCATGGGATGACTTAGGCATACAGAGTTCATCCCAT-GTCTAAGCGCATA
* * * *
12329179 GAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGTAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGCATCGACAGCACGCA
* * * * *
12329244 G-GGGGGATCG-GGTCGATCCCTGGCTTGCGCATTCTCCCTCTCCGGCCAGTTGAGCACCTGCAC
66 GTGGGGGATCGAGCT-GATCCCTGGCTTGCACATTCTCCCTCTCCGACCAGCTGAGCACCCGCAC
** * ** *
12329307 GGTCGTTTCATGGGATGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
130 ACTCGTTTCATGGGATGACTTAGGCATACAGAGTTCATCCCATGTCTAAGC
12329358 CCCAGCCAGA
Statistics
Matches: 153, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
183 2 0.01
184 91 0.59
185 60 0.39
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (185 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGCATCGACAGCACGCA
GTGGGGGATCGAGCTGATCCCTGGCTTGCACATTCTCCCTCTCCGACCAGCTGAGCACCCGCACA
CTCGTTTCATGGGATGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCGCATA
Found at i:12329639 original size:158 final size:158
Alignment explanation
Indices: 12329179--12329673 Score: 568
Period size: 158 Copynumber: 3.1 Consensus size: 158
12329169 TAAGCGCATA
*
12329179 GAGTTCATTCCCA-GTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGTAGGATCGACAGCACGC
1 GAGTTCATT-CCATGTCTAAGATCGGACCGAACTGAGGGTTGCGGCAGTAGGATCGACAGCACGC
* * * * * *
12329243 AGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTCCCTCTCCGGCCAGTTGAGCACCTGCACG
65 AGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGATGAGCACCCGCACG
* * *
12329308 GTCGTTTCATGGGATGGCTTAGGCATAGG
130 CTCGTTTCATGGGTTGGCTTAGGCATACG
* ** * *
12329337 GAGTTCATTCCATGTCTAAG-CCCCAGCC-AGACTGAGGGTTGTGGCAG-CGCGA-CTGACAGCA
1 GAGTTCATTCCATGTCTAAGATCGGA-CCGA-ACTGAGGGTTGCGGCAGTAG-GATC-GACAGCA
* * * * * *
12329398 TGCAGAGGAGGACCGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGGTCGGATCAGCACCCG
62 CGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGATGAGCACCCG
* * * *
12329463 TACGCTCGTTTCAAGGGTTGACTTAGGCACACG
126 CACGCTCGTTTCATGGGTTGGCTTAGGCATACG
* * * * *
12329496 GAGTTCATTCCTTGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGTAGGATCGATAGCACGTA
1 GAGTTCATTCCATGTCTAAGATCGGACCGAACTGAGGGTTGCGGCAGTAGGATCGACAGCACGCA
* * * *
12329561 GGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACGC
66 GGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGATGAGCACCCGCACGC
* *
12329626 TCGTTTCGTGGGTTGGCTTAGGCATACA
131 TCGTTTCATGGGTTGGCTTAGGCATACG
*
12329654 GAGTTCATTTCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
12329674 CATATGGAGT
Statistics
Matches: 274, Mismatches: 53, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
157 7 0.03
158 142 0.52
159 120 0.44
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCATGTCTAAGATCGGACCGAACTGAGGGTTGCGGCAGTAGGATCGACAGCACGCA
GGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGATGAGCACCCGCACGC
TCGTTTCATGGGTTGGCTTAGGCATACG
Found at i:12330512 original size:548 final size:548
Alignment explanation
Indices: 12329414--12330500 Score: 1290
Period size: 548 Copynumber: 2.0 Consensus size: 548
12329404 GGAGGACCGG
* *
12329414 GCCGATCCCCGGCTTGCGCATTATACCTCTCCGGTCGGATCAGCACCCGTACGCTCGTTTCAAGG
1 GCCGATCCCCGGCTTGCGCATTATACCTCTCCGATCGGATCAGCACCCGTACGCCCGTTTCAAGG
* * ** * *
12329479 GTTGACTTAGGCACACGGAGTTCATTCCTTGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGT
66 GTTGACTTAGGCACACGGAGTTCATTCCATGTCTAAGACCCAATCGAACCGAGGGTTACGGCAGC
* * * ** *
12329544 AGGATCGATAGCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTACCTCTCCGACCG
131 AGGACCGATAGCACGTAGAGGGGATCGGGCAGATCCCCGGCTTACGCATTATACCTCTCCGACCG
* * * * *
12329609 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTTCATGTCTAAG
196 GCTCAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAG
* * * * * * *
12329674 CATATGGAGTTATTTCCCAGTCTATGATCGGACCGGACTGAGGCTTGTAATAGTAGGACCAGCAG
261 CATACGAAGTTATTTCCCAGTCTAAGATCGGACCAGACTGAGGCTTGCAACAGCAGGACCAGCAG
* * * ** * *
12329739 CAGGATCGGTAGCACGCAGGGGGGACCGGGTCGATCCCCGACTAGTGCATTCTGTCTCTTCGATC
326 CAGGATCGATAGCACGCAAGGGGGACCGGGTCGATCCCCGACTAGCGCATTCTACCTCTCCGACC
* *
12329804 GGCTGAGTGACCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAA
391 GGCTGAGTGACCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
* * * *
12329869 GCCCCCGTCGGACCGACGTTGTGGCAACAGGATCGGTAACGAGATCGACAGCACACAGAGAAGGA
456 ACCCCAGTCGGACCGACGTTGTGGCAACAGAACCGGTAACGAGATCGACAGCACACAGAGAAGGA
* * *
12329934 CTGGGTTGATCCTCGGCTTACGCATTAT
521 CTGAGCTGATCCCCGGCTTACGCATTAT
* ** * * * **
12329962 GCCGATCCCCGGCTTGTC-CATTCTACCTCTTTGATCGGCTGAGCGCCCGTACGCCCGTTTCCTG
1 GCCGATCCCCGGCTTG-CGCATTATACCTCTCCGATCGGATCAGCACCCGTACGCCCGTTTCAAG
* * * * * * *
12330026 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTATGGCTG
65 GGTTGACTTAGGCACACGGAGTTCATTCCATGTCTAAGACCCAATCGAACCGAGGGTTACGGCAG
* * * *
12330091 CGGGACCGATAGCACG-AGAAAGGGGATCGGGCAGATCCCCGGCTTACGCATTATGCCTCTCTGG
130 CAGGACCGATAGCACGTAG--AGGGGATCGGGCAGATCCCCGGCTTACGCATTATACCTCTCCGA
*
12330155 CCGGCTCAGCACCCGCACACTGGTTTCGTGGGTTGACTTAGGCATAC-GAAGTTCATTCCATGTC
193 CCGGCTCAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCATGTC
* * * *
12330219 -AAGCATACGAAGTTCATTT-CCAGTCTAAGATCGGATCAGACTGAGGGTTGCGACAGCAGGACT
257 TAAGCATACGAAGTT-ATTTCCCAGTCTAAGATCGGACCAGACTGAGGCTTGCAACAGCAGGACC
* * * *
12330282 AGCAGCAGGATCGATCGCACGTAAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTC
321 AGCAGCAGGATCGATAGCACGCAAGGGGGACCGGGTCGATCCCCGACTAGCGCATTCTACCTCTC
* * *
12330347 CTG-CCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCAT
386 C-GACCGGCTGAGTGACCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCAT
* * * ** * * **
12330411 GTCTAAACCCCAGTCGGATCGAGGGTTGTGGCAGCA-AACCGGTAGTGGGATCGGCAGCATGCAG
450 GTCTAAACCCCAGTCGGACCGA-CGTTGTGGCAACAGAACCGGTAACGAGATCGACAGCACACAG
**
12330475 AGGGGGA-TCGAGCTGATCCCCGGCTT
514 AGAAGGACT-GAGCTGATCCCCGGCTT
12330501 GTGCGTTATG
Statistics
Matches: 447, Mismatches: 84, Indels: 16
0.82 0.15 0.03
Matches are distributed among these distances:
547 3 0.01
548 335 0.75
549 109 0.24
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (548 bp):
GCCGATCCCCGGCTTGCGCATTATACCTCTCCGATCGGATCAGCACCCGTACGCCCGTTTCAAGG
GTTGACTTAGGCACACGGAGTTCATTCCATGTCTAAGACCCAATCGAACCGAGGGTTACGGCAGC
AGGACCGATAGCACGTAGAGGGGATCGGGCAGATCCCCGGCTTACGCATTATACCTCTCCGACCG
GCTCAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAG
CATACGAAGTTATTTCCCAGTCTAAGATCGGACCAGACTGAGGCTTGCAACAGCAGGACCAGCAG
CAGGATCGATAGCACGCAAGGGGGACCGGGTCGATCCCCGACTAGCGCATTCTACCTCTCCGACC
GGCTGAGTGACCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
ACCCCAGTCGGACCGACGTTGTGGCAACAGAACCGGTAACGAGATCGACAGCACACAGAGAAGGA
CTGAGCTGATCCCCGGCTTACGCATTAT
Found at i:12330901 original size:159 final size:156
Alignment explanation
Indices: 12330684--12331239 Score: 446
Period size: 159 Copynumber: 3.6 Consensus size: 156
12330674 GGGGATCGTA
* * * * * * * *
12330684 CCGATCCCCAGCTTGCGCATTCTGCCTCTCCAGTCTGCTGAGCACCCGCACACCCATTTCGTGGG
1 CCGATCCCTAGCTTGCGCATTATGCCTCTCC-GGCTGCTTAACGCCCGCACGCTCATTTCGTGGG
* * *
12330749 TTGGCTTAGGCATA-GGTAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGC
65 TTGACTTAGGCATACGG-AGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGC
12330813 GGGATCGGCATCACGCAAAGGGGGACCGAG
129 -GGATC-GCATCACGCAAAGGGGGACCGAG
* *
12330843 CCGATCCCTAGCTTGCGCATTATGCCTCTTCGGCTGGCTTAACGCCCGTACGCTCATTTCGTGGG
1 CCGATCCCTAGCTTGCGCATTATGCCTCTCCGGCT-GCTTAACGCCCGCACGCTCATTTCGTGGG
* * ** * * **
12330908 TTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAG-ATCGGACTGGACCGAGGGTTACGGCAG
65 TTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAG
** *
12330971 C--A-CG--T-A-G----GGGGGATTGGG
128 CGGATCGCATCACGCAAAGGGGGACCGAG
* * * * * * * *
12330989 TCGATCCC-AGGCTTGCGTATTCTGCCTCTCC-GATCGATTGAGCGCCTGCACGCACATTTCGTG
1 CCGATCCCTA-GCTTGCGCATTATGCCTCTCCGGCT-GCTT-AACGCCCGCACGCTCATTTCGTG
* * *
12331052 GGTTGGCTTAGGCATA-GAGAGTTCATTCCATGTCTAAACCCCAACCGGACCGAGGGTTGTGGCA
63 GGTTGACTTAGGCATACG-GAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCA
* *
12331116 GCAGGATCAGCAGCACGCAGAA-GGGGAGCGAG
127 GC-GGATC-GCATCACGCA-AAGGGGGACCGAG
* * * * * *
12331148 CTGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCAGCTCAACGCCTGCACGCTCATTTCATGGG
1 CCGATCCCTAGCTTGCGCATTATGCCTCTCCGG-CTGCTTAACGCCCGCACGCTCATTTCGTGGG
* *
12331213 TTGATTTAGGCATACGGAGTTTATTCC
65 TTGACTTAGGCATACGGAGTTCATTCC
12331240 CAGCCTAAGA
Statistics
Matches: 305, Mismatches: 65, Indels: 54
0.72 0.15 0.13
Matches are distributed among these distances:
145 9 0.03
146 100 0.33
147 1 0.00
149 1 0.00
150 2 0.01
151 2 0.01
152 1 0.00
154 2 0.01
155 2 0.01
156 1 0.00
158 5 0.02
159 171 0.56
160 8 0.03
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.24
Consensus pattern (156 bp):
CCGATCCCTAGCTTGCGCATTATGCCTCTCCGGCTGCTTAACGCCCGCACGCTCATTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGG
ATCGCATCACGCAAAGGGGGACCGAG
Found at i:12331241 original size:305 final size:305
Alignment explanation
Indices: 12330685--12331268 Score: 818
Period size: 305 Copynumber: 1.9 Consensus size: 305
12330675 GGGATCGTAC
*
12330685 CGATCCCCAGCTTGCGCATTCTGCCTCTCCAGTCTGCTGAGCACCCGCACACCCATTTCGTGGGT
1 CGATCCCCAGCTTGCGCATTCTGCCTCTCCAGTCTGCTGAGCACCCGCACACACATTTCGTGGGT
* * * *
12330750 TGGCTTAGGCATAGGTAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCGG
66 TGGCTTAGGCATAGGTAGTTCATTCCATGTCTAAACCCCAACCAGACCGAGGGTTGTGGCAGCAG
* * * **
12330815 GATCGGCATCACGCAAAGGGGGACCGAGCCGATCCCTAGCTTGCGCATTATGCCTCTTCGGCTGG
131 GATCAGCAGCACGCAAAGGGGGACCGAGCCGATCCCTAGCTTGCGCATTATGCCTCTCCGGCCAG
* * * * *
12330880 CTTAACGCCCGTACGCTCATTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTAAGA
196 CTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGCCTAAGA
*
12330945 TCGGACTGGACCGAGGGTTACGGCAGCACGTAGGGGGGATTGGGT
261 TCGGACTGCACCGAGGGTTACGGCAGCACGTAGGGGGGATTGGGT
* * * * *
12330990 CGAT-CCCAGGCTTGCGTATTCTGCCTCTCC-GATC-GATTGAGCGCCTGCACGCACATTTCGTG
1 CGATCCCCA-GCTTGCGCATTCTGCCTCTCCAG-TCTG-CTGAGCACCCGCACACACATTTCGTG
*
12331052 GGTTGGCTTAGGCATAGAG-AGTTCATTCCATGTCTAAACCCCAACCGGACCGAGGGTTGTGGCA
63 GGTTGGCTTAGGCATAG-GTAGTTCATTCCATGTCTAAACCCCAACCAGACCGAGGGTTGTGGCA
* * *
12331116 GCAGGATCAGCAGCACGCAGAA-GGGGAGCGAGCTGATCCCTGGCTTGCGCATTATGCCTCTCCG
127 GCAGGATCAGCAGCACGCA-AAGGGGGACCGAGCCGATCCCTAGCTTGCGCATTATGCCTCTCCG
* * * *
12331180 GCCAGCTCAACGCCTGCACGCTCATTTCATGGGTTGATTTAGGCATACGGAGTTTATTCCCAGCC
191 GCCAGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGCC
*
12331245 TAAGATTGGACTGCACCGAGGGTT
256 TAAGATCGGACTGCACCGAGGGTT
12331269 GCAGTAGCAG
Statistics
Matches: 244, Mismatches: 30, Indels: 10
0.86 0.11 0.04
Matches are distributed among these distances:
304 6 0.02
305 235 0.96
306 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (305 bp):
CGATCCCCAGCTTGCGCATTCTGCCTCTCCAGTCTGCTGAGCACCCGCACACACATTTCGTGGGT
TGGCTTAGGCATAGGTAGTTCATTCCATGTCTAAACCCCAACCAGACCGAGGGTTGTGGCAGCAG
GATCAGCAGCACGCAAAGGGGGACCGAGCCGATCCCTAGCTTGCGCATTATGCCTCTCCGGCCAG
CTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGCCTAAGA
TCGGACTGCACCGAGGGTTACGGCAGCACGTAGGGGGGATTGGGT
Found at i:12331406 original size:158 final size:160
Alignment explanation
Indices: 12331043--12331406 Score: 355
Period size: 158 Copynumber: 2.3 Consensus size: 160
12331033 CCTGCACGCA
* * * *
12331043 CATTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAA-ACCCCAACCGGACCGAGG
1 CATTTCATGGGTTTGCTTAGGCATACAGAGTTCATTCCATGTCTAAGACCCCAACCGCACCGAGG
** * * *
12331107 GTTGTGGCAGCAGGATCAGCAGCACGCAGAAGGGGAGCGAGCTGATCCCTGGCTTGCGCATTATG
66 GTTGCAGCAGCAGGATCAGCAGCACGCAGAAGGGGACCGAGCCGATCCCTGGCTTACGCATTATG
* ** *
12331172 CCTCTCCGGCCAGCTCAACGCCTGCACGCT
131 CCTCTCCGACCAGCTCAACGCCCACACACT
* * * * **** *
12331202 CATTTCATGGG-TTGATTTAGGCATACGGAGTTTATTCCCA-GCCTAAGA-TTGGACTGCACCGA
1 CATTTCATGGGTTTG-CTTAGGCATACAGAGTTCATT-CCATGTCTAAGACCCCAACCGCACCGA
* * *
12331264 GGGTTGCAGTAGCAGGATC-GACAGCACGCAG-AGGGGACC-AGGCCGATCCTTGGCTTATGCAT
64 GGGTTGCAGCAGCAGGATCAG-CAGCACGCAGAAGGGGACCGA-GCCGATCCCTGGCTTACGCAT
* * * * **
12331326 TTTGCCTCTCCGACCGGTTGAGTGCCCACACACT
127 TATGCCTCTCCGACCAGCTCAACGCCCACACACT
*
12331360 CGTTTCATGGGTTTGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
1 CATTTCATGGGTTTGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
12331407 CATACAAAGT
Statistics
Matches: 162, Mismatches: 36, Indels: 15
0.76 0.17 0.07
Matches are distributed among these distances:
157 4 0.02
158 85 0.52
159 69 0.43
160 4 0.02
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (160 bp):
CATTTCATGGGTTTGCTTAGGCATACAGAGTTCATTCCATGTCTAAGACCCCAACCGCACCGAGG
GTTGCAGCAGCAGGATCAGCAGCACGCAGAAGGGGACCGAGCCGATCCCTGGCTTACGCATTATG
CCTCTCCGACCAGCTCAACGCCCACACACT
Found at i:12331410 original size:26 final size:26
Alignment explanation
Indices: 12331380--12331432 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12331370 GTTTGCTTAG
*
12331380 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
12331406 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
12331432 G
1 G
12331433 ATTAGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:12331605 original size:26 final size:26
Alignment explanation
Indices: 12331576--12331628 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12331566 GTTGAGTTAG
12331576 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12331602 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12331628 G
1 G
12331629 ATAGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12331897 original size:159 final size:157
Alignment explanation
Indices: 12331734--12332103 Score: 375
Period size: 158 Copynumber: 2.3 Consensus size: 157
12331724 GAGCGCCCGC
* * *
12331734 ACGCTCGTTTCATTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCGCAGCTGGACC
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCGCA-CCGGACC
* * * *
12331799 GAGGGTTGTGGCAGCGGGACCGATAGCACGCAGAGGGGGA-CTGGGTCGATCCCCAGCTTGCGCA
65 GAGGGTTGTGACAGCAGGACCGACAGCACGCAGA-GGGGACCT-GGTCGATCCACAGCTTGCGCA
* ** *
12331863 TTATGCCTCTCCGACCGGGTCAGTGCTTAA
128 TTATGCCTCTCCGACCAGGTCAGCACCTAA
* * ** * * * *
12331893 ACGCTCATTTTATGGGTTAACTTAGGCATACGAATTTCATTCCCA-GTCTAAGATCGGACCGGAC
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG-CCGCACCGGAC
* * * * * * *
12331957 CGAGGGTTGTGACAGTAGGATCGACAGCAGGTAGAGGGGACCTGGTCGGTCCACGGCTTGTGCAT
64 CGAGGGTTGTGACAGCAGGACCGACAGCACGCAGAGGGGACCTGGTCGATCCACAGCTTGCGCAT
* * *
12332022 TCTGCCTCTCCGACCAGGTGAGCACCTAC
129 TATGCCTCTCCGACCAGGTCAGCACCTAA
* * * * *
12332051 ATGCTCGTTTCGTGGGTTGGCTTTGGCGTATGGAGTTCATTCCATGTCTAAGC
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12332104 ATACAGAGTT
Statistics
Matches: 166, Mismatches: 41, Indels: 10
0.76 0.19 0.05
Matches are distributed among these distances:
157 3 0.02
158 82 0.49
159 75 0.45
160 6 0.04
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.26
Consensus pattern (157 bp):
ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCGCACCGGACCG
AGGGTTGTGACAGCAGGACCGACAGCACGCAGAGGGGACCTGGTCGATCCACAGCTTGCGCATTA
TGCCTCTCCGACCAGGTCAGCACCTAA
Found at i:12332090 original size:158 final size:157
Alignment explanation
Indices: 12331602--12332102 Score: 447
Period size: 159 Copynumber: 3.2 Consensus size: 157
12331592 CCCAGTCTAA
* * * *
12331602 GCATGCGGAGTTCATTCCCA-GTCTAAGATAGGACTGGACCGAGGG-TGCGGTAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGTAGGATCGAC
* * * ** ** **
12331665 AGCACGCAGTGGGGACCAGG-CTGATCCCTGGCTTGTGCATTTTGCCTCTTAGGTCATCTGAGCG
65 AGCACGCAGAGGGGACCTGGTC-GATCCC-GGCTTGTGCATTATGCCTCTCCGACCAGGTGAGCG
** *
12331729 CCCGCACGCTCGTTTCATTGGTTGGCTTAG
128 CCTACACGCTCGTTTCATGGGTTGGCTTAG
* * * ** * *
12331759 GCATAGGGAGTTCATTCCATGTCTAAG-CCGCAGCTGGACCGAGGGTTGTGGCAGCGGGACCGAT
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-CTGGACCGAGGGTTGTGGCAGTAGGATCGAC
* * * * *
12331823 AGCACGCAGAGGGGGA-CTGGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGGTCAGT
65 AGCACGCAGA-GGGGACCT-GGTCGAT-CCCGGCTTGTGCATTATGCCTCTCCGACCAGGTGAGC
* * * * **
12331887 GCTTAAACGCTCATTTTATGGGTTAACTTAG
127 GCCTACACGCTCGTTTCATGGGTTGGCTTAG
* * * *
12331918 GCATACGAATTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTGTGACAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGTAGGATCGAC
* * * * *
12331982 AGCAGGTAGAGGGGACCTGGTCGGTCCACGGCTTGTGCATTCTGCCTCTCCGACCAGGTGAGCAC
65 AGCACGCAGAGGGGACCTGGTCGATCC-CGGCTTGTGCATTATGCCTCTCCGACCAGGTGAGCGC
* * *
12332047 CTACATGCTCGTTTCGTGGGTTGGCTTTG
129 CTACACGCTCGTTTCATGGGTTGGCTTAG
* *
12332076 GCGTATGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
12332103 CATACAGAGT
Statistics
Matches: 264, Mismatches: 68, Indels: 23
0.74 0.19 0.06
Matches are distributed among these distances:
156 5 0.02
157 38 0.14
158 102 0.39
159 109 0.41
160 10 0.04
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGTAGGATCGACA
GCACGCAGAGGGGACCTGGTCGATCCCGGCTTGTGCATTATGCCTCTCCGACCAGGTGAGCGCCT
ACACGCTCGTTTCATGGGTTGGCTTAG
Found at i:12332317 original size:26 final size:26
Alignment explanation
Indices: 12332287--12332341 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
12332277 GTTGACTTAG
*
12332287 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
12332313 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12332339 GCA
1 GCA
12332342 GCACGTAGAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12334308 original size:26 final size:26
Alignment explanation
Indices: 12334272--12334324 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12334262 TTTGGCTTAG
12334272 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12334298 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12334324 G
1 G
12334325 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12334656 original size:26 final size:26
Alignment explanation
Indices: 12334626--12334678 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12334616 GTTGACTTAG
*
12334626 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12334652 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12334678 G
1 G
12334679 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12335313 original size:26 final size:27
Alignment explanation
Indices: 12335276--12335334 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 27
12335266 GTTGACTTAG
*
12335276 GCATAC-AGAGTTGATTCCCAGTCTAA
1 GCATACGAGAGTTCATTCCCAGTCTAA
12335302 GCATACGA-AGTTCATTCCCAGTCTAA
1 GCATACGAGAGTTCATTCCCAGTCTAA
12335328 GCATACG
1 GCATACG
12335335 GATCAGACCG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 30 0.97
27 1 0.03
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (27 bp):
GCATACGAGAGTTCATTCCCAGTCTAA
Found at i:12335795 original size:158 final size:156
Alignment explanation
Indices: 12335340--12335813 Score: 409
Period size: 159 Copynumber: 3.0 Consensus size: 156
12335330 ATACGGATCA
* * * * * *
12335340 GACCGGACCGAGGGTTGCGACAGTAGGATCGATAGCACGTATGGGGGACTGGGCCGATCCCCGGC
1 GACCGGA-CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGAC-CGGCCGATCCCCGGC
* * *
12335405 TTGTGCATTCTGCCTCTTCGCCCGGCTGAGTGCCCGCACGC-CTGTTTCATGGGTTGGCTTAGGC
64 TTGTGCATTCTGCCTCTTCGACAGGCTGAGCGCCCGCACGCTC-GTTTCATGGGTTGGCTTAGGC
* *
12335469 ATAGGGAGTTCATT-CCATGTCTAAGCCC
128 ATACGGAGTTCATTCCCATATCTAAGCCC
* * * * * * * * * **
12335497 CAGTCGGACTGAGGGTTGTGGCAGC-GAGAACAACAGTACGCAGAGGGGGATCGGGCTGATTCGT
1 GA-CCGGAC-GAGGGTTGCGGCAGCAG-GATCGACAGCACGCAG-GGGGGA-CCGGCCGATCCCC
* * * * * * * * * * *
12335561 GACTTGTGCATTATGCCTCTCCAACAGGCTCAGCACCCGCGCACTCATTTCGTGGGTTGACTTAG
61 GGCTTGTGCATTCTGCCTCTTCGACAGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* ***
12335626 GCATACAGAGTTCATTCCCA-ATCTAAGATTG
126 GCATACGGAGTTCATTCCCATATCTAAG-CCC
*
12335657 GACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCAGGTCGATCCCCGGC
1 GACCGGA-CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACC-GGCCGATCCCCGGC
** *** *
12335722 TTCCGCATTCTGCCTCTTCGGGTGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCA
64 TTGTGCATTCTGCCTCTTCGACAGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCA
*
12335787 TACGGAGTTCATT-CCATTTCTAAGCCC
129 TACGGAGTTCATTCCCATATCTAAGCCC
12335814 CAGCCAAACC
Statistics
Matches: 236, Mismatches: 69, Indels: 24
0.72 0.21 0.07
Matches are distributed among these distances:
157 7 0.03
158 107 0.45
159 114 0.48
160 8 0.03
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GACCGGACGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGCCGATCCCCGGCTT
GTGCATTCTGCCTCTTCGACAGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
CGGAGTTCATTCCCATATCTAAGCCC
Found at i:12335827 original size:158 final size:157
Alignment explanation
Indices: 12335342--12335982 Score: 439
Period size: 158 Copynumber: 4.0 Consensus size: 157
12335332 ACGGATCAGA
* * * * * *
12335342 CCGGACCGAGGGTTGCGACAGTAGGATCGATAGCACGTATGGGGGACTGGGCCGATCCCCGGCTT
1 CCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGAC-CGGCCGATCCCCGGCTT
* * *
12335407 GTGCATTCTGCCTCTTCGCCCGGCTGAGTGCCCGCACGC-CTGTTTCATGGGTTGGCTTAGGCAT
65 GTGCATTCTGCCTCTTCGACAGGCTGAGCGCCCGCACGCTC-GTTTCATGGGTTGGCTTAGGCAT
* *
12335471 AGGGAGTTCATTCCATGTCTAAGCCCCAG
129 ACGGAGTTCATTCCATATCTAAGCCCCAG
* * * * * * * * * ** *
12335500 TCGGACTGAGGGTTGTGGCAGC-GAGAACAACAGTACGCAGAGGGGGATCGGGCTGATTCGTGAC
1 CCGGACCGAGGGTTGCGGCAGCAG-GATCGACAGCACGCAG-GGGGGA-CCGGCCGATCCCCGGC
* * * * * * * * * *
12335564 TTGTGCATTATGCCTCTCCAACAGGCTCAGCACCCGCGCACTCATTTCGTGGGTTGACTTAGGCA
63 TTGTGCATTCTGCCTCTTCGACAGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCA
* ****
12335629 TACAGAGTTCATTCCCA-ATCTAAG-ATTGG
128 TACGGAGTTCATT-CCATATCTAAGCCCCAG
* *
12335658 ACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCAGGTCGATCCCCGGCT
1 -CCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACC-GGCCGATCCCCGGCT
** *** *
12335723 TCCGCATTCTGCCTCTTCGGGTGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
64 TGTGCATTCTGCCTCTTCGACAGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
*
12335788 ACGGAGTTCATTCCATTTCTAAGCCCCAG
129 ACGGAGTTCATTCCATATCTAAGCCCCAG
** * * * *
12335817 CCAAACCGAGGGATGTGACAGCAGAACTGACAGTGGGATCGACAGTACACAGTGTGGGACCGGGC
1 CCGGACCGAGGG-T-TG-C-G--G--CAG-CA---GGATCGACAGCACGCAG-GGGGGACC-GGC
* * * * * * * *
12335882 TGATCCCCGGCTTATACATTTTGCCTCTTCGATC-GGTTGAGCTCCTGCATGCTCGTTTCATGGG
52 CGATCCCCGGCTTGTGCATTCTGCCTCTTCGA-CAGGCTGAGCGCCCGCACGCTCGTTTCATGGG
* ** *
12335946 TTGACTTAGGCATACAAAGTTCATCCCA-AGTCTAAGC
116 TTGGCTTAGGCATACGGAGTTCATTCCATA-TCTAAGC
12335983 ATACGGAGTT
Statistics
Matches: 362, Mismatches: 96, Indels: 37
0.73 0.19 0.07
Matches are distributed among these distances:
157 5 0.01
158 118 0.33
159 116 0.32
160 8 0.02
161 1 0.00
162 1 0.00
164 1 0.00
166 2 0.01
167 2 0.01
170 15 0.04
171 93 0.26
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
CCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGCCGATCCCCGGCTTG
TGCATTCTGCCTCTTCGACAGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC
GGAGTTCATTCCATATCTAAGCCCCAG
Found at i:12335985 original size:26 final size:26
Alignment explanation
Indices: 12335955--12336007 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12335945 GTTGACTTAG
12335955 GCATACAAAGTTCA-TCCCAAGTCTAA
1 GCATACAAAGTTCATTCCCAA-TCTAA
**
12335981 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
12336007 G
1 G
12336008 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAATCTAA
Found at i:12337191 original size:48 final size:48
Alignment explanation
Indices: 12337118--12337214 Score: 149
Period size: 48 Copynumber: 2.0 Consensus size: 48
12337108 ACCTGCACGC
* * *
12337118 TTGTTTTGTGGGTTGACTTAAGCATACGGAGTTCATTCCTAGTCAAAA
1 TTGTTTTGTAGGTTGACTTAAGCATACGAAGTTCATTCCCAGTCAAAA
* *
12337166 TTGTTTTGTAGGTTGACTTATGCATATGAAGTTCATTCCCAGTCAAAA
1 TTGTTTTGTAGGTTGACTTAAGCATACGAAGTTCATTCCCAGTCAAAA
12337214 T
1 T
12337215 CAGACCAAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.26, C:0.14, G:0.21, T:0.39
Consensus pattern (48 bp):
TTGTTTTGTAGGTTGACTTAAGCATACGAAGTTCATTCCCAGTCAAAA
Found at i:12337378 original size:26 final size:26
Alignment explanation
Indices: 12337349--12337423 Score: 107
Period size: 26 Copynumber: 2.9 Consensus size: 26
12337339 GCTTAGGCAT
*
12337349 ACGGAGTTAATTCCATGTCTAAGCAA
1 ACGGAGTTCATTCCATGTCTAAGCAA
*
12337375 ACGGAGTTCATTCCATGTCTAAGCAT
1 ACGGAGTTCATTCCATGTCTAAGCAA
*
12337401 ATGGAGTTCATTCC-TAGTCTAAG
1 ACGGAGTTCATTCCAT-GTCTAAG
12337424 ATCGGATAGG
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
25 1 0.02
26 44 0.98
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (26 bp):
ACGGAGTTCATTCCATGTCTAAGCAA
Found at i:12337594 original size:26 final size:26
Alignment explanation
Indices: 12337565--12337616 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12337555 TGAGTTGACT
12337565 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* *
12337591 TAAGCGTACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
12337617 AAAATCATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:12338803 original size:26 final size:27
Alignment explanation
Indices: 12338755--12338808 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
12338745 GTTGACTTAG
*
12338755 GCATACGGAGTACATCCCTAGT-CTAA
1 GCATACGAAGTACATCCCTAGTCCTAA
*
12338781 GCATACGAAGTTCATTCCC-AGTCCTAA
1 GCATACGAAGTACA-TCCCTAGTCCTAA
12338808 G
1 G
12338809 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 15 0.62
27 9 0.38
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.24
Consensus pattern (27 bp):
GCATACGAAGTACATCCCTAGTCCTAA
Found at i:12339083 original size:159 final size:158
Alignment explanation
Indices: 12338815--12339282 Score: 406
Period size: 158 Copynumber: 3.0 Consensus size: 158
12338805 TAAGATCAGA
* * * * *
12338815 CCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGAGGGATCGGGCTGATCTCTGGCTT
1 CCGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACACAGGAGGGATCGGGCCGATCTCTGACTT
* * ** * * * * * * * *
12338880 GCGCATTCTGCCTCTTTGGCCGGCTGAGTGCGCGCATGCCCATTTCGTGTGTTGGCTTAGGCTTA
66 GCGCATTATGCCTATCCGGCCGGCTCAGTGCCCGCACGCCCATTTCATGGGTTGACTTACGCGTA
*
12338945 GGGAGTTCATTCCATGTCTAAACCCTAG
131 CGGAGTTCATTCCATGTCTAAACCCTAG
* * * *
12338973 CCGGACCGAGGGTTGTGGCAGC-GAGACCGGCAGCACACAGAGGGGGATCGGGCCGGTCTCTGAC
1 CCGGACCGAGGGTTGCGGCAGCAG-GACCGACAGCACACAG-GAGGGATCGGGCCGATCTCTGAC
*
12339037 TTGCGCATTATGCCTATCCGGCCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTACGCG
64 TTGCGCATTATGCCTATCCGGCCGGCTCAGTGCCCGCACGCCCATTTCATGGGTTGACTTACGCG
* *
12339102 TACGGAGTTCATTCCCA-GTTTAAGA-TC-AG
129 TACGGAGTTCATT-CCATGTCTAA-ACCCTAG
* * * * ** * * ** *
12339131 ACCGGACCGAGGGTTACAGCAGCAGGATCGACAACACGTAGGGGGGATCGGGTCGATC-CCCAGG
1 -CCGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACACAGGAGGGATCGGGCCGATCTCTGA-C
* * * * * * * *** * * *
12339195 TTGCACATTCTGCCTCTCCTGCCAGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCA
64 TTGCGCATTATGCCTATCCGGCCGGCTCAGTGCCCGCACGCCCATTTCATGGGTTGACTTACGCG
12339260 TACGGAGTTCATTCCATGTCTAA
129 TACGGAGTTCATTCCATGTCTAA
12339283 GCATATGGAG
Statistics
Matches: 251, Mismatches: 51, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
157 6 0.02
158 121 0.48
159 119 0.47
160 5 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
CCGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACACAGGAGGGATCGGGCCGATCTCTGACTT
GCGCATTATGCCTATCCGGCCGGCTCAGTGCCCGCACGCCCATTTCATGGGTTGACTTACGCGTA
CGGAGTTCATTCCATGTCTAAACCCTAG
Found at i:12339287 original size:26 final size:26
Alignment explanation
Indices: 12339257--12339309 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12339247 GTTGGCTTAG
12339257 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12339283 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12339309 G
1 G
12339310 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12339662 original size:26 final size:26
Alignment explanation
Indices: 12339626--12339678 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12339616 GTTGACTTAG
12339626 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
12339652 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
12339678 G
1 G
12339679 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:12340234 original size:316 final size:317
Alignment explanation
Indices: 12339652--12340470 Score: 873
Period size: 316 Copynumber: 2.6 Consensus size: 317
12339642 CCCAATCTAA
* * * * * ** ***
12339652 GCATAC-AGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGACAGTAGGATCGGT
1 GCATACGA-AGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAACAGGATCAAC
** * * * * * *
12339716 AGCACACA-AGGGGGATAGGGTCGATCCCCAGCTTACGCATTCTACCTCTCCGGCC-AGCTAAGC
65 AGCACACAGA-AAGGATCGAGTCGATCCTCAGCTTGCGCATTCTGCCTCTCCGACCGA-CTAAGC
* *
12339779 GCCCGCATGCCCGTTTCGTGGGTTCGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
128 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* * *
12339844 TAGACCAAGGGTTGTAGCAGCGAGACCGATAGCACGCAGAGGGCGATCGGGCCATTCCCCAGCTT
193 TAGACCAAGGGTTGTAGCAGCGAGACCGACACCACGCAGAGGGCGACCGGGCCATTCCCCAGCTT
* ** *
12339909 GCGCATTATGCCTCTTTAACCAGCTCAGCGCCTAAACGCTCGTTTCATAGGTTGACGTAT
258 ACGCATTATGCCTCTCCAACCAGCTCAGCGCCTAAACGCTCGTTTCATAGGTTGACGTAG
* * * *
12339969 GCATACGAAGTTCATTCCCAATCTAAGATCAGATC-GAACCGAGGGTTGCGGTAATAGGAT-GAC
1 GCATACGAAGTTCATTCCCAATCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAACAGGATCAAC
* * *
12340032 AGCACATAGAAAGGATCGA-TCCGATCCTCAACTTGCGCATTCTGCCTCTTCGACCGACTAAGCG
65 AGCACACAGAAAGGATCGAGT-CGATCCTCAGCTTGCGCATTCTGCCTCTCCGACCGACTAAGCG
* * *
12340096 CCTGCACGCCCGTTTCGTGGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCTCAGCT
129 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT
* ** * * * * *
12340161 GGACTGAGGGTTGTGGCAGCG-GTACCGGCCACCA-GTAGAGGGGGACCGGGCCGA-TCCCCGGC
194 AGACCAAGGGTTGTAGCAGCGAG-ACC-GACACCACGCAGAGGGCGACCGGGCC-ATTCCCCAGC
** * ** * *
12340223 TTACGCATTATGCCTCTCCAGTCGGCTCAGCGCCTGTACGCTCGTTTCATGGGTTGACTTAG
256 TTACGCATTATGCCTCTCCAACCAGCTCAGCGCCTAAACGCTCGTTTCATAGGTTGACGTAG
* * * *
12340285 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAACA
1 GCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAACAGGATCAACA
** *** * ** * * *
12340350 GCATGCAGGGGGGATCGAGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATAGGCTGAGTGCC
66 GCACACAGAAAGGATCGAGTCGATCCTCAGCTTGCGCATTCTGCCTCTCCGACCGACTAAGCGCC
* * *
12340415 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAATTCATTCCATGTCTAAGC
131 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
12340471 ATACGGAGTT
Statistics
Matches: 418, Mismatches: 73, Indels: 22
0.81 0.14 0.04
Matches are distributed among these distances:
315 2 0.00
316 253 0.61
317 161 0.39
318 2 0.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (317 bp):
GCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAACAGGATCAACA
GCACACAGAAAGGATCGAGTCGATCCTCAGCTTGCGCATTCTGCCTCTCCGACCGACTAAGCGCC
CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAG
ACCAAGGGTTGTAGCAGCGAGACCGACACCACGCAGAGGGCGACCGGGCCATTCCCCAGCTTACG
CATTATGCCTCTCCAACCAGCTCAGCGCCTAAACGCTCGTTTCATAGGTTGACGTAG
Found at i:12340284 original size:159 final size:159
Alignment explanation
Indices: 12339737--12340472 Score: 435
Period size: 159 Copynumber: 4.6 Consensus size: 159
12339727 GGGATAGGGT
* * * ** * * * *
12339737 CGATCCCCAGCTTACGCATTCTACCTCTCCGGCCA-GCTAAGCGCCCGCATGCCCGTTTCGTGGG
1 CGATCCCCGGCTTACGCATTATGCCTCTCC-GATAGGCTCAGCGCCTGCACGCTCGTTTCGTGGG
* * ** * * **
12339801 TTCGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTAGACCAAGGGTTGTAGCAGC
65 TTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATCAGACCAGACCGAGGGTTGCGGCAGC
* * * * * * *
12339865 -GAGACCGATAGCACGCAGAGGGCGATCGGGC
130 AG-GACCAACACCATGCAG-GGGGGACCGAGC
* * *** * ** * *
12339896 C-ATTCCCCAGCTTGCGCATTATGCCTCTTTAACCA-GCTCAGCGCCTAAACGCTCGTTTCATAG
1 CGA-TCCCCGGCTTACGCATTATGCCTCTCCGA-TAGGCTCAGCGCCTGCACGCTCGTTTCGTGG
* * * * * * * *
12339959 GTTGACGTATGCATACGAAGTTCATTCCCA-ATCTAAG-ATCAGATC-GAACCGAGGGTTGCGGT
64 GTTGGCTTAGGCATATGGAGTTCATT-CCATGTCTAAGCATCAGACCAG-ACCGAGGGTTGCGGC
** ** *** * *
12340021 AATAGGA-TGACAGCACAT--AGAAAGGATCGATC
127 AGCAGGACCAACA-C-CATGCAGGGGGGACCGAGC
* ** * * * ** * * *
12340053 CGATCCTCAACTTGCGCATTCTGCCTCTTCGACCGACTAAGCGCCTGCACGCCCGTTTCGTGGGT
1 CGATCCCCGGCTTACGCATTATGCCTCTCCGATAGGCTCAGCGCCTGCACGCTCGTTTCGTGGGT
* * * ** * *
12340118 TGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCTCAG-CTGGACTGAGGGTTGTGGCAGC-
66 TGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATCAGACCAGACCGAGGGTTGCGGCAGCA
** * *
12340181 GGTACCGGCCACCA-GTAGAGGGGGACCGGGC
131 GG-ACC-AACACCATGCAG-GGGGGACCGAGC
* * *
12340212 CGATCCCCGGCTTACGCATTATGCCTCTCC-AGTCGGCTCAGCGCCTGTACGCTCGTTTCATGGG
1 CGATCCCCGGCTTACGCATTATGCCTCTCCGA-TAGGCTCAGCGCCTGCACGCTCGTTTCGTGGG
*
12340276 TTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCGGCAG
65 TTGGCTTAGGCATATGGAGTTCATT-CCATGTCTAAGCATCAGACCAGACCGAGGGTTGCGGCAG
* * * *
12340339 CAGGATCAACAGCATGCAGGGGGGATCGAGT
129 CAGGACCAACACCATGCAGGGGGGACCGAGC
* * * * * *
12340370 CGATCCTCGGCTTGCGCATTCTGCCTCTCCGATAGGCTGAGTGCCCGCACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTACGCATTATGCCTCTCCGATAGGCTCAGCGCCTGCACGCTCGTTTCGTGGGT
*
12340435 TGGCTTAGGCATATGGAATTCATTCCATGTCTAAGCAT
66 TGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCAT
12340473 ACGGAGTTCA
Statistics
Matches: 433, Mismatches: 117, Indels: 54
0.72 0.19 0.09
Matches are distributed among these distances:
156 6 0.01
157 97 0.22
158 120 0.28
159 199 0.46
160 11 0.03
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (159 bp):
CGATCCCCGGCTTACGCATTATGCCTCTCCGATAGGCTCAGCGCCTGCACGCTCGTTTCGTGGGT
TGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATCAGACCAGACCGAGGGTTGCGGCAGCA
GGACCAACACCATGCAGGGGGGACCGAGC
Found at i:12341928 original size:26 final size:26
Alignment explanation
Indices: 12341892--12341944 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12341882 GTTGACTTAG
*
12341892 GCATACGGAGTTCATCCCCACTCTAA
1 GCATACAGAGTTCATCCCCACTCTAA
* *
12341918 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCACTCTAA
12341944 G
1 G
12341945 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCACTCTAA
Found at i:12344745 original size:26 final size:26
Alignment explanation
Indices: 12344709--12344761 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12344699 GTTGACTTAG
*
12344709 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
12344735 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12344761 G
1 G
12344762 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12345051 original size:159 final size:159
Alignment explanation
Indices: 12344862--12345237 Score: 384
Period size: 158 Copynumber: 2.4 Consensus size: 159
12344852 CGGCTGAGCA
* * *
12344862 CCCGCACGC-CTGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-
1 CCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
* * * ** * * * * * * *
12344925 CCGGATCGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGGGGATCGG-GCTGATCCTCAGC
65 CCAGACCAAGGGTTACGACAGCAGGACTGACAGCAAGCAG-GGGGGACCGGATC-GATCCCCAGC
* *
12344989 TTGCGCATTATGCCTCTCCGGTCGGCTCAACG
128 TTGCGCATTATACCTCTCCGGTCAGCTCAACG
* * * * * *
12345021 CCTGCACGCTCGTTTCGTGGTTTGACTTAGGCATATGGAGTTCATTCC-TAGTGTAAG-ATCAGA
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGA
* * * * *
12345084 TCAGACCAAGGGTTACGATAGCAGGATTGATAGCAAGCAGGGGGGACCGGATCGATCCCCGGCTT
65 CCAGACCAAGGGTTACGACAGCAGGACTGACAGCAAGCAGGGGGGACCGGATCGATCCCCAGCTT
* * *
12345149 GCGCATTCTACCTCTCCGGTCAGCTGAGCG
130 GCGCATTATACCTCTCCGGTCAGCTCAACG
* *
12345179 CCCGCACTCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
12345238 TATGGAGTTC
Statistics
Matches: 174, Mismatches: 37, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
158 96 0.55
159 77 0.44
160 1 0.01
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (159 bp):
CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
CAGACCAAGGGTTACGACAGCAGGACTGACAGCAAGCAGGGGGGACCGGATCGATCCCCAGCTTG
CGCATTATACCTCTCCGGTCAGCTCAACG
Found at i:12345245 original size:26 final size:26
Alignment explanation
Indices: 12345209--12345261 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12345199 GTTGGCTTAG
12345209 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12345235 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12345261 G
1 G
12345262 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12345594 original size:25 final size:26
Alignment explanation
Indices: 12345565--12345616 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12345555 GTTGACTTAG
12345565 GCATA-GAAGTTCATGCCCAATCTAA
1 GCATATGAAGTTCATGCCCAATCTAA
* * *
12345590 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATGCCCAATCTAA
12345616 G
1 G
12345617 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATATGAAGTTCATGCCCAATCTAA
Found at i:12346302 original size:26 final size:26
Alignment explanation
Indices: 12346266--12346318 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12346256 GTTACCTTAG
* *
12346266 GCATATGGAGTTGATCCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
* *
12346292 GCATATAGAGTTCATTCTCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
12346318 G
1 G
12346319 ATCGGATAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCCAGTCTAA
Found at i:12346595 original size:159 final size:159
Alignment explanation
Indices: 12346333--12346795 Score: 450
Period size: 158 Copynumber: 2.9 Consensus size: 159
12346323 GATAGGATTG
* * * * * * * *
12346333 AGGGTTGCGACAGCAGGA-TCGGCAACACGCAGGGTGGACTGGACCGATCCCCAGCTTGTGCATT
1 AGGGTTACGACAGCAGGACT-GACAGCAAGCAGGGGGGACCGGATCGATCCCCAGCTTGCGCATT
* * * * * *
12346397 CTGCCTCTCCGGCCGACTGAGCGCCCACACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTT
65 CTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
* * * *
12346462 CATTCCATGTCTAAGCCCCAG-CCGGATCG
130 CATTCCATGTCTAAGCACCAGACCAGACCA
** * * * * * * *
12346491 AGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGGGGATCGG-GCTGATCCTCAGCTTGCGCAT
1 AGGGTTACGACAGCAGGACTGACAGCAAGCAG-GGGGGACCGGATC-GATCCCCAGCTTGCGCAT
* * * * * * *
12346555 TATGCCTCTCCGGTCGGCTCAACGCCTGCACGCTCGTTTCGTGGTTTGACTTAGGCATATGGAGT
64 TCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
* * *
12346620 TCATTCC-TAGTGTAAG-ATCAGATCAGACCA
129 TCATTCCAT-GTCTAAGCACCAGACCAGACCA
* * * *
12346650 AGGGTTACGACAGCAGGATTGATAGCAAGCAGGGGGGACCGGATCGATCCCCGGCTTACGCATTC
1 AGGGTTACGACAGCAGGACTGACAGCAAGCAGGGGGGACCGGATCGATCCCCAGCTTGCGCATTC
* * * *
12346715 TACCTCTCCGGTCAGCTGAGCGCCCGCACTCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
66 TGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
12346780 ATTCCATGTCTAAGCA
131 ATTCCATGTCTAAGCA
12346796 TATGGAGTTC
Statistics
Matches: 243, Mismatches: 54, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
158 122 0.50
159 121 0.50
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
AGGGTTACGACAGCAGGACTGACAGCAAGCAGGGGGGACCGGATCGATCCCCAGCTTGCGCATTC
TGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCACCAGACCAGACCA
Found at i:12346803 original size:26 final size:26
Alignment explanation
Indices: 12346767--12346819 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12346757 GTTGGCTTAG
12346767 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12346793 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12346819 G
1 G
12346820 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12347152 original size:25 final size:26
Alignment explanation
Indices: 12347123--12347174 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12347113 GTTGACTTAG
12347123 GCATA-GAAGTTCATGCCCAATCTAA
1 GCATATGAAGTTCATGCCCAATCTAA
* * *
12347148 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATGCCCAATCTAA
12347174 G
1 G
12347175 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATATGAAGTTCATGCCCAATCTAA
Found at i:12347862 original size:26 final size:26
Alignment explanation
Indices: 12347826--12347878 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12347816 GTTACCTTAG
* *
12347826 GCATATGGAGTTGATCCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
* *
12347852 GCATATAGAGTTCATTCTCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
12347878 G
1 G
12347879 ATCGGATAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCCAGTCTAA
Found at i:12348353 original size:158 final size:157
Alignment explanation
Indices: 12347852--12348342 Score: 420
Period size: 158 Copynumber: 3.1 Consensus size: 157
12347842 CCCAGTCTAA
* * ** * *
12347852 GCATATAGAGTTCATTCTCAGTCTAAGATCGGATAGGATTGAGGGTTGCGACAGCAGGATCGGCA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAAATAGGAATGAGGGTTGCGACAGCAGGATCGACA
* * * * * * *
12347917 ACACGCAGGGTGGACTGGACCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCGCC
66 GCACGAAGGGGGGACAGGA-CGATCCCCAGCTTGCGCATTCTACCTCTCTGGCCGACTGAGCG-C
* *
12347982 CA-CACGCCCATTTCGTGGGTTGGCTTAG
129 CAGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** *** * * * *
12348010 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCA--AATCAAGGGTTGTGGCAGCGGGATCG
1 GCATATGGAGTTCATTCCCA-GTCTAAG-ATCAAATAGGAAT-GAGGGTTGCGACAGCAGGATC-
* * * * * * * *
12348072 GA-AGCACGCAAAGGGGGACCAGGTCGATCCCCATCTTTCGCATTATACTTCT-TCGGCCGGCTC
62 GACAGCACG-AAGGGGGGA-CAGGACGATCCCCAGCTTGCGCATTCTACCTCTCT-GGCCGACTG
* * * *
12348135 AGCGCTC-GCACACTCGTTTCATGGGTTGACTTAT
124 AGCGC-CAGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
12348169 GCATACGGAGTTCATTCCCAGTCTAAGATCAAATTGGACTGAGGGTTGCGACAGCAAGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAAATAGGAATGAGGGTTGCGACAGCAGGATCGACA
* * * *
12348234 GCACGTAGGGGGGATCGGGACGATTCCCAGCTTGCGCATTCTACCTCTCTGACCGACTGAGCGCC
66 GCACGAAGGGGGGA-CAGGACGATCCCCAGCTTGCGCATTCTACCTCTCTGGCCGACTGAGCGCC
*
12348299 AGCACGCTCGTTTCGTAGGTTGGCTTAG
130 AGCACGCTCGTTTCGTGGGTTGGCTTAG
12348327 GCATATGGAGTTCATT
1 GCATATGGAGTTCATT
12348343 TCATGTCTAA
Statistics
Matches: 251, Mismatches: 67, Indels: 30
0.72 0.19 0.09
Matches are distributed among these distances:
157 5 0.02
158 129 0.51
159 109 0.43
160 8 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAAATAGGAATGAGGGTTGCGACAGCAGGATCGACA
GCACGAAGGGGGGACAGGACGATCCCCAGCTTGCGCATTCTACCTCTCTGGCCGACTGAGCGCCA
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12349230 original size:26 final size:26
Alignment explanation
Indices: 12349180--12349232 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12349170 GTTGGCTTAG
*
12349180 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
12349206 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
12349232 G
1 G
12349233 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:12350038 original size:159 final size:158
Alignment explanation
Indices: 12349852--12350382 Score: 597
Period size: 159 Copynumber: 3.3 Consensus size: 158
12349842 GCATGCTTGT
*
12349852 ACGCTCGTTTCGTGGGTTGGCTTAGGCATA-GAGAGTTCATTCCATGTCTAAACCCCAACCAGAC
1 ACGCCCGTTTCGTGGGTTGGCTTAGGCATACG-GAGTTCATTCCATGTCTAAACCCCAACCAGAC
** * * *
12349916 CGAGGGTTGTGGTAGTGGGATTGACAGCATGCAGAGGGGGATCGGACCGATCCCCGGCTTATGCA
65 CGAGGGTTGTGGTAGCAGGATCGACAGCATGCAGAGGGGGACCGG-TCGATCCCCGGCTTATGCA
12349981 TTATGCCTCTTCGATCGGCTCAGCGCCCGC
129 TTATGCCTCTTCGATCGGCTCAGCGCCCGC
* * * *
12350011 ACGCCCGTTTCGTGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACC
1 ACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAACCAGACC
* * * * *
12350076 GAGGGTTGTGATAGCAGGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTACGCAT
66 GAGGGTTGTGGTAGCAGGATCGACAGCATGCAGAGGGGGACC-GGTCGATCCCCGGCTTATGCAT
** **
12350141 TATGCCTCTTCGGCCGGCTCAATGCCCGC
130 TATGCCTCTTCGATCGGCTCAGCGCCCGC
* * * * * ** *
12350170 ACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGA-TCGGA-CTGA
1 ACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAA-ACCCCAACCAG-
* * *
12350232 ACCGAGGGTTGCGGTAGCAGGATCGACAGCATGCAG-GGGGGACCAGGTTGATCCCCTGCTT-TC
63 ACCGAGGGTTGTGGTAGCAGGATCGACAGCATGCAGAGGGGGACC-GGTCGATCCCCGGCTTAT-
* * * *
12350295 GTATTCTGCCTCTTCGATCGGCTGAGCGCTCGC
126 GCATTATGCCTCTTCGATCGGCTCAGCGCCCGC
*
12350328 ACGCACGCTTGTTTCCTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
1 ACGC-C-C--GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
12350383 GCATATGGAG
Statistics
Matches: 309, Mismatches: 52, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
158 53 0.17
159 209 0.68
160 7 0.02
161 3 0.01
162 37 0.12
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
ACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAACCAGACC
GAGGGTTGTGGTAGCAGGATCGACAGCATGCAGAGGGGGACCGGTCGATCCCCGGCTTATGCATT
ATGCCTCTTCGATCGGCTCAGCGCCCGC
Found at i:12350407 original size:26 final size:26
Alignment explanation
Indices: 12350357--12350409 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12350347 GTTGGCTTAG
*
12350357 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
12350383 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
12350409 G
1 G
12350410 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:12350774 original size:26 final size:26
Alignment explanation
Indices: 12350738--12350790 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12350728 GTTGACGTAG
12350738 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12350764 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12350790 G
1 G
12350791 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12351434 original size:26 final size:26
Alignment explanation
Indices: 12351404--12351459 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
12351394 TGGGTTGACT
12351404 TAAGCATAAGGAGTTCATCCCTAGTC
1 TAAGCATAAGGAGTTCATCCCTAGTC
* *
12351430 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATAAGGAGTTCATCCCTAGTC
12351456 TAAG
1 TAAG
12351460 ATTGGATCGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATAAGGAGTTCATCCCTAGTC
Found at i:12353466 original size:159 final size:158
Alignment explanation
Indices: 12353225--12353910 Score: 576
Period size: 159 Copynumber: 4.3 Consensus size: 158
12353215 AGCAGTATCA
* * * ** *
12353225 ACAGCATGCAG-GGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTC-TCTGGCCGGCTGA
1 ACAGCATGCAGAGGGGGACCGGGCCGATCCTCGACTTGCGCATTATGCCTCTTC-GATCGGCTCA
** * * * * *
12353288 GCAACCGCACACCCGTTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCAAGTCTAAGCCCCA
65 GCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCA
12353353 GTCCGGACCGAGGGTTGTGGCAGCGGTACCG
130 G-CCGGACCGAGGGTTGTGGCAGCGG-ACCG
* *
12353384 ACAGCATAG-AGAGGGGGACCAGGCCAATCCTCGACTTGCGCATTATGCCTCTTCGATCGGC-CA
1 ACAGCAT-GCAGAGGGGGACCGGGCCGATCCTCGACTTGCGCATTATGCCTCTTCGATCGGCTCA
* * * ****
12353447 GCGCCCGCACATTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAG-ATTG
65 GCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCA
* * *
12353511 GACCGGACCGAGGGTTGCGGCAGCAAGATCG
130 G-CCGGACCGAGGGTTGTGGCAGC-GGACCG
* * * * * * * *
12353542 ATAGCATGCAG-GAGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATTGGCTGA
1 ACAGCATGCAGAG-GGGGACCGGGCCGATCCTCGACTTGCGCATTATGCCTCTTCGATCGGCTCA
* * * * * * *
12353606 GCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
65 GCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCA
** *
12353671 GCCGGATAGAGGGTTGTGGCAGTAGGACCG
130 GCCGGACCGAGGGTTGTGGCAG-CGGACCG
* * * * * * * *
12353701 GCAGCACGCAGAGGGGGACTGGGCCGATCGTGGACTTGCGTATTATGCCTCTCCGGTCGGCTCAG
1 ACAGCATGCAGAGGGGGACCGGGCCGATCCTCGACTTGCGCATTATGCCTCTTCGATCGGCTCAG
* * * * * * * *** *
12353766 CTCCTGCACACTCATTTCATGTGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAATATCCAA
66 CGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAG
* ** * * *
12353831 CCGAACCGAGGGTTGCAGTAGTTGGATCG
131 CCGGACCGAGGGTTGTGGCAG-CGGACCG
** * * * *
12353860 ACAGCACACAG-GGGGGATCGGGCCGATCCTCGGCTTACGCATTCTGCCTCT
1 ACAGCATGCAGAGGGGGACCGGGCCGATCCTCGACTTGCGCATTATGCCTCT
12353911 CCGGTCAAAG
Statistics
Matches: 410, Mismatches: 107, Indels: 21
0.76 0.20 0.04
Matches are distributed among these distances:
157 2 0.00
158 105 0.26
159 259 0.63
160 42 0.10
161 2 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
ACAGCATGCAGAGGGGGACCGGGCCGATCCTCGACTTGCGCATTATGCCTCTTCGATCGGCTCAG
CGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCAG
CCGGACCGAGGGTTGTGGCAGCGGACCG
Found at i:12353783 original size:318 final size:317
Alignment explanation
Indices: 12353163--12353910 Score: 932
Period size: 318 Copynumber: 2.4 Consensus size: 317
12353153 CCTAGTCTAA
* * *
12353163 GCATA-AGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCAGTAGCAGTATCAAC
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGTAGCAG-ATCGAC
* * *
12353227 AGCATGCAGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTC-TCTGGCCGGCTGAGCA
64 AGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCTGACCGGCTGAGCA
12353291 ACCGCACACCCGTTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGTC
129 ACCGCACACCCGTTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGTC
* *
12353356 CGGACCGAGGGTTGTGGCAGCGGTACCGACAGCATAGAGAGGGGGACCAGGCCAATCCTCGACTT
194 CGGACAGAGGGTTGTGGCAGAGGTACCGACAGCATAGAGAGGGGGACCAGGCCAATCCTCGACTT
* * * * *
12353421 GCGCATTATGCCTCTTCGATCGGCCAGCGCCCGCACATTCATTTCGTGGGTTGACTTAT
259 GCGCATTATGCCTCTCCGATCGGCCAGCGCCCGCACACTCATTTCATGGGTTAACTTAG
* * * * *
12353480 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAAGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGTAGC-AGATCGACA
* * ** *
12353545 GCATGCAGGAGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTC-GATTGGCTGAGCG
65 GCATGCAGG-GGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCTGACCGGCTGAGCA
* * * * *
12353609 CCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-C
129 ACCGCACACCCGTTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGTC
* * * ** * * *
12353673 CGGATAGAGGGTTGTGGCAGTAGG-ACCGGCAGCA-CGCAGAGGGGGACTGGGCCGATCGTGGAC
194 CGGACAGAGGGTTGTGGCAG-AGGTACCGACAGCATAG-AGAGGGGGACCAGGCCAATCCTCGAC
* * * * *
12353736 TTGCGTATTATGCCTCTCCGGTCGGCTCAGCTCCTGCACACTCATTTCATGTGTTAACTTAG
257 TTGCGCATTATGCCTCTCCGATCGGC-CAGCGCCCGCACACTCATTTCATGGGTTAACTTAG
* ** * **
12353798 GCATACAGAGTTCATTCCCAGTCTAATATCCAACCGAACCGAGGGTTGCAGTAGTTGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGTAG-CAGATCGACA
** *
12353863 GCACACAGGGGGGATCGGGCCGATCCTCGGCTTACGCATTCTGCCTCT
65 GCATGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCT
12353911 CCGGTCAAAG
Statistics
Matches: 366, Mismatches: 57, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
316 1 0.00
317 169 0.46
318 194 0.53
319 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (317 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGTAGCAGATCGACAG
CATGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCTGACCGGCTGAGCAAC
CGCACACCCGTTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGTCCG
GACAGAGGGTTGTGGCAGAGGTACCGACAGCATAGAGAGGGGGACCAGGCCAATCCTCGACTTGC
GCATTATGCCTCTCCGATCGGCCAGCGCCCGCACACTCATTTCATGGGTTAACTTAG
Found at i:12354132 original size:255 final size:255
Alignment explanation
Indices: 12353663--12354166 Score: 550
Period size: 255 Copynumber: 2.0 Consensus size: 255
12353653 TTCCATGTCT
** * * * *
12353663 AAGCCCCAGCCGGATAGAGGGTTGTGGCAGTAGGACCGGCAGCACGCAGAGGGGGACTGGGCCGA
1 AAGCCCCAGCCAAATAGAAGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCCGA
* * * * *
12353728 TCGTGGACTTGCGTATTATGCCTCTCCGGTCGGCTCAGCTCCTGCACACTCATTTCATGTGTTAA
66 TCGTGGACTTGCGCATTATGCCACTCCGGCCGGCTCAGCTCCCGCACACTCATTTCATGGGTTAA
* * * **
12353793 CTTAGGCATACAGAGTTCATTCCCAGTCTAATATCCAACCGAACCGAGGGTTGCAGTAGTTGGAT
131 CTTAGGCATACAGAGTTCATTCCCAATCTAAGATCCAACCGAACCAAGGGTTGCAGTAGCAGGAT
* * *
12353858 CGACAGCACACAGGGGGGATCGGGCCGAT-CCTCGGCTTACGCATTCTGCCTCTCCGGTCA
196 CGACAGCACACAAGGGGGATCAGGCCGATCCCT-GACTTACGCATTCTGCCTCTCCGGTCA
* * * * * *
12353918 AAGCCCCAGCCAAATCGAAGGTTGTGGCAGCGGGACTGACAGCATGTAGAGGGGGACCGGGTCGA
1 AAGCCCCAGCCAAATAGAAGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCCGA
* * * * *
12353983 TCCTTGG-CTTGTGCATTATGCCACTTCGGCCGGCTCAG-TGCCCGCACGCTCGTTTCATGGGTT
66 T-CGTGGACTTGCGCATTATGCCACTCCGGCCGGCTCAGCT-CCCGCACACTCATTTCATGGGTT
* * * ** ***
12354046 GACTTATGCATACGGAGTTCATTCCCAATCTAAGA-CCAGACC-AGATTAAGGGTTTTGGTAGCA
129 AACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCCA-ACCGA-ACCAAGGGTTGCAGTAGCA
* ** *
12354109 GGATCGATAGCACGTAAGGGGGATCAGGCCGATCCCTGACTTGCGCATTCTGCCTCTC
192 GGATCGACAGCACACAAGGGGGATCAGGCCGATCCCTGACTTACGCATTCTGCCTCTC
12354167 TAGCCAGCTA
Statistics
Matches: 202, Mismatches: 42, Indels: 10
0.80 0.17 0.04
Matches are distributed among these distances:
254 5 0.02
255 190 0.94
256 7 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (255 bp):
AAGCCCCAGCCAAATAGAAGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCCGA
TCGTGGACTTGCGCATTATGCCACTCCGGCCGGCTCAGCTCCCGCACACTCATTTCATGGGTTAA
CTTAGGCATACAGAGTTCATTCCCAATCTAAGATCCAACCGAACCAAGGGTTGCAGTAGCAGGAT
CGACAGCACACAAGGGGGATCAGGCCGATCCCTGACTTACGCATTCTGCCTCTCCGGTCA
Found at i:12354261 original size:26 final size:26
Alignment explanation
Indices: 12354211--12354263 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12354201 GTTGGCTTAT
*
12354211 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
12354237 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
12354263 G
1 G
12354264 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:12355944 original size:159 final size:158
Alignment explanation
Indices: 12355780--12356143 Score: 413
Period size: 159 Copynumber: 2.3 Consensus size: 158
12355770 CGCACGCCCA
* * * * *
12355780 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCTGGATCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCACACCAGAAT-GAGGGTT
* * * **
12355845 GTGGTAGCGGGACTGGCAGTACGCAAAGAGGGACCGGGCCAATCCCTGGCTTGCACATTATGCCT
65 GTGGTAGCAGGACTGACAGCACGCAAAGAGGGACCGGGCCAATCCCCAGCTTGCACATTATGCCT
* * *
12355910 CTTCAGTCGGCTCAGAGCCCGCACACTTG
130 CTCCAGTCGGCTAAGAGCCCGCACACTCG
* * * * * *
12355939 TTTCATGGGTTGGCTTATGCATACAGAGTTCATTCCCTATCTAAGATCAGACCAGAATGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCACACCAGAATGAGGGTT
* * * * ** * *
12356004 GTGGTGGCAGGATTGACAGCACGCAAGGGGGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCT
65 GTGGTAGCAGGACTGACAGCACGCAAAGAGGGACCGGGCCAATCCCCAGCTTGCACATTATGCCT
* * * * *
12356069 CTCCGGTTGGTTAAGCGCCCGCACGCTCG
130 CTCCAGTCGGCTAAGAGCCCGCACACTCG
*
12356098 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12356144 ATATGGAGTT
Statistics
Matches: 166, Mismatches: 38, Indels: 3
0.80 0.18 0.01
Matches are distributed among these distances:
159 160 0.96
160 6 0.04
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (158 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCACACCAGAATGAGGGTTG
TGGTAGCAGGACTGACAGCACGCAAAGAGGGACCGGGCCAATCCCCAGCTTGCACATTATGCCTC
TCCAGTCGGCTAAGAGCCCGCACACTCG
Found at i:12356152 original size:26 final size:26
Alignment explanation
Indices: 12356116--12356168 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12356106 GTTGGCTTAG
12356116 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12356142 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12356168 G
1 G
12356169 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12356858 original size:26 final size:26
Alignment explanation
Indices: 12356822--12356873 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12356812 GTTGGCTTAG
12356822 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12356848 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12356874 CATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12357579 original size:26 final size:26
Alignment explanation
Indices: 12357541--12357594 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
12357531 TGGGTTGACT
*
12357541 TAGGCATATGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
*
12357567 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
12357593 TA
1 TA
12357595 AGATCCGATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAGTC
Found at i:12358297 original size:26 final size:26
Alignment explanation
Indices: 12358267--12358319 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12358257 GTTGACTTAG
*
12358267 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
12358293 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12358319 G
1 G
12358320 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12358671 original size:26 final size:26
Alignment explanation
Indices: 12358635--12358687 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12358625 GTTGACTTAG
*
12358635 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12358661 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12358687 G
1 G
12358688 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12358687 original size:368 final size:365
Alignment explanation
Indices: 12357526--12358846 Score: 1693
Period size: 368 Copynumber: 3.6 Consensus size: 365
12357516 TGCACGTTTA
* * *
12357526 TTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAGGCATACGGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAG
* * * *
12357591 TCTAAGATCCGA-TCGGACCGAGGGTTCCGACAGCAGGATCGACAGCACGCAGGGGGGACCGGGT
66 TCTAAGATCGGACT-GGACCGAGGGTTGCGACAGTAGGATCGACAGCACGCAGGGGGGACCGGGC
* * * * * ** * * *
12357655 CGATCCCCTGCTTACGCATTCTGCCTTTTCAGTCGGTTGAGCGCCCGCAAGCTCGTTTCATGGGT
130 CGATCCTC-GCTTGCGCATTCTGCCTCTCCAGCCGACTGAGCACCCGCACGCCCGTTTCATGGGT
* ** *
12357720 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTACGGTAGCAG
194 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAG
* * *
12357785 GACCGGCAGCGAGATCGGTAGCACACAGAGGGGGATTGGGCTGATCCCCGACTTACGCATTA-GC
259 GACC-GCAGCG-GATCGGCAGCACACAGAGGGGGATCGGGCTGATCCTCGACTTACGCATTATGC
* * **
12357849 CTGTCCGACCGGCCTCTCTTGCCGGTTGAGCGCCCATACGCTCG
322 CTGTCCGACCGGCCTCTCCTGCCGGTTGAGTGCCCGCACGCTCG
* *
12357893 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCTGG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAG
* * *
12357958 TCTAAGATCAGACTGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACACAGGGGGGACCGGGCC
66 TCTAAGATCGGACTGGACCGAGGGTTGCGACAGTAGGATCGACAGCACGCAGGGGGGACCGGGCC
* * ** ** * * *
12358023 GATCCCTTGCTTGAGCATTCTGCCTCT-TTGACCGGTTGAGCACCCGCACGTCCGTTTCGTGCGT
131 GAT-CCTCGCTTGCGCATTCTGCCTCTCCAG-CCGACTGAGCACCCGCACGCCCGTTTCATGGGT
* ** *
12358087 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGAGGGTTGTGGCAG-TG
194 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAG
12358151 G---G-A---G-T-GGCAGCACACAGAGGGGGATCGGGCTGATCCTCGACTTACGCATTATGCCT
259 GACCGCAGCGGATCGGCAGCACACAGAGGGGGATCGGGCTGATCCTCGACTTACGCATTATGCCT
* * * *
12358207 GTCCGACTGGCCTCTCCTGCTGGCTAAGTGCCCGCACGCTCG
324 GTCCGACCGGCCTCTCCTGCCGGTTGAGTGCCCGCACGCTCG
* *
12358249 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCTAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAG
**
12358314 TCTAAGATCGGACTGGACTAAGGGTTGC-AGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGC
66 TCTAAGATCGGACTGGACCGAGGGTTGCGA-CAGTAGGATCGACAGCACGCAGGGGGGACCGGGC
** * ** *
12358378 CGATCCTCGACTTTTGCATTCTGCCTCTCC-GATCGACTGAGC-CCCTGCACGCCCGTTTTGTGT
130 CGATCCTCG-CTTGCGCATTCTGCCTCTCCAG-CCGACTGAGCACCC-GCACGCCCGTTTCATGG
*
12358441 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAGGCCCCAGCCGGACCGAGGGTTGTGGCAGC
192 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGC
* * * * *
12358506 AGGACCGACAGCGGGATCGACAGCACGCAGAGGGGGATCGGGTTGATCCTCGGCTTACGTATTAT
257 AGGACCG-CAGC-GGATCGGCAGCACACAGAGGGGGATCGGGCTGATCCTCGACTTACGCATTAT
* * *
12358571 GCCTGTCCGACCGACCTCCCCTACCGGTTGAGTGCCCGCACGCTCG
320 GCCTGTCCGACCGGCCTCTCCTGCCGGTTGAGTGCCCGCACGCTCG
*
12358617 TTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAG
** *
12358682 TCTAAGATCGGACTGGATTGAGGGTTGCGACAGTAGGATCGACAGCACGCAGGGGGGACCGAGCC
66 TCTAAGATCGGACTGGACCGAGGGTTGCGACAGTAGGATCGACAGCACGCAGGGGGGACCGGGCC
* * * ** * *
12358747 GATCCCCAGCTTGCGCATTCTGCCTCTCCAGCCGACTGAACGCTTGCATGCTCGTTTCATGGGTT
131 GATCCTC-GCTTGCGCATTCTGCCTCTCCAGCCGACTGAGCACCCGCACGCCCGTTTCATGGGTT
12358812 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
195 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12358847 ATATGGAGTT
Statistics
Matches: 831, Mismatches: 99, Indels: 47
0.85 0.10 0.05
Matches are distributed among these distances:
355 50 0.06
356 261 0.31
357 3 0.00
360 1 0.00
361 1 0.00
362 2 0.00
366 4 0.00
367 218 0.26
368 287 0.35
369 4 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (365 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAG
TCTAAGATCGGACTGGACCGAGGGTTGCGACAGTAGGATCGACAGCACGCAGGGGGGACCGGGCC
GATCCTCGCTTGCGCATTCTGCCTCTCCAGCCGACTGAGCACCCGCACGCCCGTTTCATGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGA
CCGCAGCGGATCGGCAGCACACAGAGGGGGATCGGGCTGATCCTCGACTTACGCATTATGCCTGT
CCGACCGGCCTCTCCTGCCGGTTGAGTGCCCGCACGCTCG
Found at i:12358849 original size:26 final size:26
Alignment explanation
Indices: 12358819--12358871 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12358809 GTTGGCTTAG
12358819 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12358845 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12358871 G
1 G
12358872 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12359723 original size:163 final size:157
Alignment explanation
Indices: 12359332--12359731 Score: 401
Period size: 157 Copynumber: 2.5 Consensus size: 157
12359322 TGGTCGACTG
* * * * **
12359332 AGCGCCCGCACGCTCATTTCAT-GGTTGACTTAGGCATACGAAGTTCATTCCCACTCTAATATTG
1 AGCGCCCGCACGCTCATTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
** * *
12359396 GACTAGACCGAGGGTTGCAACAGCAGGATCGATAGCACGCAGGGGGGACCGGGTCGATCCCCAGC
66 GACCGGACCGAGGGTTGCAACAGCAGGACCGATAGCACGCAGGGGGGACAGGGTCGATCCCCAGC
* * **
12359461 TTGCGCATTCTGCCTCTCCGGTTGGCT
131 TTGCGCATTATGCCTCTCCGATCAGCT
* * * ** * * * ** *
12359488 -GGGCACCGCATGCCCATTTTGTGGGTTCACTTAGGCATAAGGAGGTCATTCCTTGTCTAAGCCT
1 AGCGC-CCGCACGCTCATTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT
*** * *
12359552 CA-ACCGGACCGAGGGTTGTGGCAGCGGGACCGGTAGCACGCAGAGGGGGACAGGGTCGATCCCT
64 CAGACCGGACCGAGGGTTGCAACAGCAGGACCGATAGCACGCAG-GGGGGACAGGGTCGAT-CC-
*
12359616 CATCAGCTTGCGCATTATGCCTCTCTGATCAGCT
126 C--CAGCTTGCGCATTATGCCTCTCCGATCAGCT
* * *
12359650 CAGCGCCCGTACGCTCGTTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGATC
1 -AGCGCCCGCACGCTCATTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
12359715 AGACCGGACCGAGGGTT
65 AGACCGGACCGAGGGTT
12359732 ACGGTAGGGG
Statistics
Matches: 189, Mismatches: 44, Indels: 15
0.76 0.18 0.06
Matches are distributed among these distances:
155 3 0.02
156 13 0.07
157 63 0.33
158 16 0.08
159 2 0.01
160 1 0.01
162 29 0.15
163 59 0.31
164 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
AGCGCCCGCACGCTCATTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
GACCGGACCGAGGGTTGCAACAGCAGGACCGATAGCACGCAGGGGGGACAGGGTCGATCCCCAGC
TTGCGCATTATGCCTCTCCGATCAGCT
Found at i:12359853 original size:26 final size:26
Alignment explanation
Indices: 12359824--12359876 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12359814 GTTGGCTTAG
*
12359824 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
12359850 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
12359876 G
1 G
12359877 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:12360182 original size:170 final size:170
Alignment explanation
Indices: 12359912--12360244 Score: 445
Period size: 170 Copynumber: 2.0 Consensus size: 170
12359902 AGTAGGACCA
* *
12359912 GCAGCAGGATCTACAGCACGTAGGAGGGATCGAGTCGATCCCCGACTTACGAATTCTACCTTTCC
1 GCAGCAGGATCGACAGCACGTAGGAGGGATCGAGTCGATCCCCGACTTACGAATTCTACCTCTCC
* * * * * *
12359977 GGCTAGCTGAGTGCCTGCACGCTCGTTTCATGGGTTCGCTTAGGCATACAGAGTTAATTCCATGT
66 AGCCAACTGAGCGCCCGCACGCCCGTTTCATGGGTTCGCTTAGGCATACAGAGTTAATTCCATGT
12360042 CTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAAGACTG
131 CTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAAGACTG
* * * * * *
12360082 GCAGCGGGATCGACAGCAC-TCAGAGGGGGATCGAGTTGATCCCCGGCTTACGCATTCTGCCTCT
1 GCAGCAGGATCGACAGCACGT-AG-GAGGGATCGAGTCGATCCCCGACTTACGAATTCTACCTCT
* * ** *
12360146 CCAGCCAATTGAGCGCCCGCACGCCCGTTT-ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
64 CCAGCCAACTGAGCGCCCGCACGCCCGTTTCATGGGTTCGCTTAGGCATACAGAGTTAATTCCAT
* *
12360210 GTCTAAGCCCCAGCTAGATCGAGGGTTGTGGTAGC
129 GTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGC
12360245 GGGACCGACA
Statistics
Matches: 140, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
169 1 0.01
170 82 0.59
171 57 0.41
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (170 bp):
GCAGCAGGATCGACAGCACGTAGGAGGGATCGAGTCGATCCCCGACTTACGAATTCTACCTCTCC
AGCCAACTGAGCGCCCGCACGCCCGTTTCATGGGTTCGCTTAGGCATACAGAGTTAATTCCATGT
CTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAAGACTG
Found at i:12360532 original size:158 final size:159
Alignment explanation
Indices: 12360155--12360534 Score: 394
Period size: 158 Copynumber: 2.4 Consensus size: 159
12360145 TCCAGCCAAT
* *
12360155 TGAGCGCCCGCACGCCCGTTT-ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
* * * * * *
12360219 CCAGCTAGATCGAGGGTTGTGGTAGCGGGACCGACAGCACGTAGAGGGGGATCAGGCCGATCCTC
66 CCAGCCAAATCAAGGGTTGTGGTAGCAGGACCGACAGCACGAAGAGGGGGATCAGGCCGATCCCC
* * * * *
12360284 GACTTACGCATTATGCCTCTATGGCCGGT
131 AACTTACACATTATGCCTCTACGACCGGC
** * * * *
12360313 TTTGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCA-ATCTAAG-
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGC
** * ** *
12360376 ATCGGACCAAA-CTAAGGGTTGTGGTAGCAGGATTGACAGCACGCAAG-GGGGGAT-TGGCCGAT
65 CCCAG-CCAAATC-AAGGGTTGTGGTAGCAGGACCGACAGCACG-AAGAGGGGGATCAGGCCGAT
* * * *
12360438 CCCCAACTTGCACATTCTGCCTCTCCGACTGGC
127 CCCCAACTTACACATTATGCCTCTACGACCGGC
* * *
12360471 TGAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12360535 ATACGGAGTT
Statistics
Matches: 177, Mismatches: 38, Indels: 13
0.78 0.17 0.06
Matches are distributed among these distances:
157 3 0.02
158 101 0.57
159 68 0.38
160 5 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
CCAGCCAAATCAAGGGTTGTGGTAGCAGGACCGACAGCACGAAGAGGGGGATCAGGCCGATCCCC
AACTTACACATTATGCCTCTACGACCGGC
Found at i:12360556 original size:26 final size:26
Alignment explanation
Indices: 12360507--12360558 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12360497 GTTGGCTTAG
*
12360507 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATCCCATGTCTAA
12360533 GCATACGGAGTTCATCCCCA-GTCTAA
1 GCATACGGAGTTCAT-CCCATGTCTAA
12360559 TATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATGTCTAA
Found at i:12361269 original size:26 final size:26
Alignment explanation
Indices: 12361230--12361279 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
12361220 GTTGACTTAG
*
12361230 GCATACGGACTTCA-TCCTCAGTCTGA
1 GCATACGAACTTCATTCC-CAGTCTGA
*
12361256 GCATACGAAGTTCATTCCCAGTCT
1 GCATACGAACTTCATTCCCAGTCT
12361280 AAGATCAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGAACTTCATTCCCAGTCTGA
Found at i:12361564 original size:159 final size:159
Alignment explanation
Indices: 12361395--12361759 Score: 380
Period size: 158 Copynumber: 2.3 Consensus size: 159
12361385 GCGCTCGCCT
* * * *
12361395 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGA-TCGAGG
1 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACT-AAGG
* * * * *
12361458 GTTGTGGTAGCGGGACTGACAACACG-TAGAGGGGGATCAGGTCGATCCTCGACTTACGCATTAT
65 GTTGTGGTAGCAGGACTGACAACACGCAAG-GGGGGAT-AGGTCGATCCCCAACTTACACATTAT
* * * ** *
12361522 GCCTCTATGGCCGGTTTTGCGCCCGCACGCTC
128 GCCTCTACGACCGGCTGAGCGCCCACACGCTC
* * * * * * *
12361554 GTTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCA-ATCTAAG-ATCGGACCAAACTAAGG
1 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAAACTAAGG
* * * ** *
12361617 GTTGTGGTAGCAGGATTGACAGCACGCAAGGGGGGATTGGTCGATCCCCAACTTGTACATTCTGC
65 GTTGTGGTAGCAGGACTGACAACACGCAAGGGGGGATAGGTCGATCCCCAACTTACACATTATGC
* *
12361682 CTCTCCGACTGGCTGAGCGCCCACACGCTC
130 CTCTACGACCGGCTGAGCGCCCACACGCTC
*
12361712 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
12361760 TACGGAGTTC
Statistics
Matches: 164, Mismatches: 36, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.02
158 81 0.49
159 74 0.45
160 6 0.04
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (159 bp):
GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACTAAGGG
TTGTGGTAGCAGGACTGACAACACGCAAGGGGGGATAGGTCGATCCCCAACTTACACATTATGCC
TCTACGACCGGCTGAGCGCCCACACGCTC
Found at i:12361767 original size:26 final size:26
Alignment explanation
Indices: 12361731--12361783 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12361721 GTTGGCTTAG
*
12361731 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
12361757 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
12361783 G
1 G
12361784 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:12362089 original size:170 final size:170
Alignment explanation
Indices: 12361819--12362151 Score: 436
Period size: 170 Copynumber: 2.0 Consensus size: 170
12361809 AGTAGGACCA
* *
12361819 GCAGCAGGATCTACAGCACGTAGGAGGGATCGAGTCGATCCCCGACTTACGAATTCTACCTTTCC
1 GCAGCAGGATCGACAGCACGTAGGAGGGATCGAGTCGATCCCCGACTTACGAATTCTACCTCTCC
* * * * * *
12361884 GGCTAGCTGAGTGCCTGCACGCTCGTTTCATGGGTTCGCTTAGGCATACAGAGTTAATTCCATGT
66 AGCCAACTGAGCGCCCGCACGCCCGTTTCATGGGTTCGCTTAGGCATACAGAGTTAATTCCATGT
12361949 CTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAAGACTG
131 CTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAAGACTG
* * * * * *
12361989 GCAGCGGGATCGACAGCAC-TCAGAGGGGGATCGAGTTGATCCCCGGCTTACGCATTCTGCCTCT
1 GCAGCAGGATCGACAGCACGT-AG-GAGGGATCGAGTCGATCCCCGACTTACGAATTCTACCTCT
* * ** *
12362053 CCAGCCAATTGAGCGCCCGCACGCCCGTTT-ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
64 CCAGCCAACTGAGCGCCCGCACGCCCGTTTCATGGGTTCGCTTAGGCATACAGAGTTAATTCCAT
** *
12362117 GTCTAAGCCCCAGCTGGACTGAGGGTTGTGGTAGC
129 GTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGC
12362152 GGGACTGACA
Statistics
Matches: 139, Mismatches: 22, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
169 1 0.01
170 81 0.58
171 57 0.41
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (170 bp):
GCAGCAGGATCGACAGCACGTAGGAGGGATCGAGTCGATCCCCGACTTACGAATTCTACCTCTCC
AGCCAACTGAGCGCCCGCACGCCCGTTTCATGGGTTCGCTTAGGCATACAGAGTTAATTCCATGT
CTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAAGACTG
Found at i:12362322 original size:159 final size:158
Alignment explanation
Indices: 12362158--12362443 Score: 353
Period size: 159 Copynumber: 1.8 Consensus size: 158
12362148 TAGCGGGACT
* * *
12362158 GACAGCATGCAAAGG-GGGACCGGGCCGATCCCCGACTTGTGCATTATGCCTCTTCAG-TCGGCT
1 GACAGCACG-AAAGGAGGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTTCAGCT-GGCT
* * *
12362221 CAGCACCCGCACGCTCGTTTCGTGGGTTGACGTAGGCATACGAAGTTCATTCCCA-GTCTAAGAT
64 CAGCACCCGCACGCTCATTTCATGGG-TGACGTAGGCATAAGAAGTTCATT-CCATGTCTAAGAT
12362285 CAGATCGAATCGAGGGTTGCAACAGCAGGATC
127 CAGATCGAATCGAGGGTTGCAACAGCAGGATC
* * * * * *
12362317 GACAGCACGTAAGGAGGGATCGGGCCGATCCCCGGCTTGCGTATTCTACCTCTTCAGCTGGCTGA
1 GACAGCACGAAAGGAGGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTTCAGCTGGCTCA
* * * * * *
12362382 GCGCCCGCATGTTCATTTCATGGGTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGATC
66 GCACCCGCACGCTCATTTCATGGGTGACGTAGGCATAAGAAGTTCATTCCATGTCTAAGATC
12362444 GGACCGGATC
Statistics
Matches: 106, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
157 3 0.03
158 34 0.32
159 68 0.64
160 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (158 bp):
GACAGCACGAAAGGAGGGACCGGGCCGATCCCCGACTTGCGCATTATACCTCTTCAGCTGGCTCA
GCACCCGCACGCTCATTTCATGGGTGACGTAGGCATAAGAAGTTCATTCCATGTCTAAGATCAGA
TCGAATCGAGGGTTGCAACAGCAGGATC
Found at i:12362623 original size:170 final size:170
Alignment explanation
Indices: 12362307--12362624 Score: 415
Period size: 169 Copynumber: 1.9 Consensus size: 170
12362297 AGGGTTGCAA
* * * *
12362307 CAGCAGGATCGACAGCACGTAAGGAGGGATCGGGCCGATCCCCGGCTTGCGTATTCTACCTCTTC
1 CAGCAGGATCAACAGCACGTAAGGAGGGATCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCC
* * * **
12362372 AGCTGGCTGAGCGCCCGCATGTTCATTTCATGGGTGGCTTAGGCATAAGGAGTTCATTCCATGTC
66 AGCCGGCTGAGCACCCGCACGCCCATTTCATGGGTGGCTTAGGCATAAGGAGTTCATTCCATGTC
* *
12362437 TAAGATCGGACCGGATCGGGGTTTATGGCAGCAGGACCAG
131 TAAGACCCGACCGGATCGGGGTTTATGGCAGCAGGACCAG
* * * *
12362477 CAGCAGGATCAACAGCACGT-AGGGGGGATCGGGCCGATCCCTGGCTTATGCATTCTGCCTCTCC
1 CAGCAGGATCAACAGCACGTAAGGAGGGATCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCC
* * * * *
12362541 GGCCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGT
66 AGCCGGCTGAGCACCCGCACGCCCATTTCATGGG-TGGCTTAGGCATAAGGAGTTCATTCCATGT
*
12362606 CTAA-ACCCTAGCCGGATCG
130 CTAAGACCCGA-CCGGATCG
12362625 AGGGGGCCCA
Statistics
Matches: 125, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
169 66 0.53
170 59 0.47
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.22
Consensus pattern (170 bp):
CAGCAGGATCAACAGCACGTAAGGAGGGATCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCC
AGCCGGCTGAGCACCCGCACGCCCATTTCATGGGTGGCTTAGGCATAAGGAGTTCATTCCATGTC
TAAGACCCGACCGGATCGGGGTTTATGGCAGCAGGACCAG
Found at i:12363772 original size:26 final size:26
Alignment explanation
Indices: 12363742--12363794 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12363732 GTTGGCTTAG
* *
12363742 GCATACGGTGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12363768 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12363794 G
1 G
12363795 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12370298 original size:26 final size:26
Alignment explanation
Indices: 12370268--12370319 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12370258 GTTGGCTTAG
12370268 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
12370294 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12370320 CATTGGATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12371026 original size:26 final size:26
Alignment explanation
Indices: 12370990--12371047 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
12370980 TTGGCTTAGT
12370990 CATACAGAGTTCATT-CCATGTCTAAG
1 CATACAGAGTTCATTCCCA-GTCTAAG
*
12371016 CATACGGAGTTCATTCCCAGTCTAA-
1 CATACAGAGTTCATTCCCAGTCTAAG
12371041 CAT-CAGA
1 CATACAGA
12371048 TCAGACCGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 20 0.69
27 3 0.10
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:12371582 original size:368 final size:367
Alignment explanation
Indices: 12370224--12371618 Score: 1087
Period size: 368 Copynumber: 3.8 Consensus size: 367
12370214 TTCTACCTCT
** * * * * * * *
12370224 CGACCGGTTGAGTGCCTGCACATTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCAT-TCCAT
1 CGACCGGTTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCTTACAGAGTTCATCCCCA-
* * * * * * *
12370288 GTCTAAGCATACGGAGTTCATTCCCAGTCTAACATTGGATTGGACTGAGGGTTACGGTAGCAGGA
65 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGAC----CGTGA--GTTGC-GG-
*
12370353 CCAGCAGTAGATCGACAGCACACAGGGGGGATCGAGTCGATCCC-CAGCTTGCACATTCTACCTC
122 -CAGCAG--GATCGGCAGCACACAGGGGGGATCGAGTCGATCCCTCAGCTTGCACATTCTACCTC
* * *
12370417 TCCGACCAGCTGAGCGCCCTCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTGATTCCA
184 TCCGACCAGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
* ** * * * *
12370482 TGTCTAAGTCCCAGTCAGACCGAGGGTTGTGGCAGCAGGACCGGTAACGGGATTGGTAGCACGTA
249 TGTCTAAGCCCCAACCAGACCGAGGGTTGCGGCAGCAGGACCGGTAAC-GGATCGATAGCACGCA
** * * * *
12370547 GAGGGGGACTAGGCTGATCCCCGACTTGCGTATTATGCCTCTCCGACTGACTTCTC
313 GAGGGGGACCGGGCTGATCCCCGGCTTGCG-ATTATGCCTCTCTGGCCGACTTCTC
* * * * * *
12370603 TGGCCGGTTGAGCACCCGCAAACTCGTTTCGTGGGTTGACATAGGCTTACGGAGTTCATCCCCAA
1 CGACCGGTTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCTTACAGAGTTCATCCCCAG
* * * * * *
12370668 TCTAAGCATACAGAGATCATTCCCAGTCTAAGATCGGACCGGACCGCGGGTTACGGTAGCAGGAT
66 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGTGAGTTGCGGCAGCAGGAT
* * * * * * * * * *
12370733 CGACAGCACGCAAGGGGGA-CTGAGCCGAT-CCTCAGCTTGCGCATTATGCCTTTTCAACCAGCT
131 CGGCAGCACACAGGGGGGATC-GAGTCGATCCCTCAGCTTGCACATTCTACCTCTCCGACCAGCT
* * * * * * * * * *
12370796 CAGTGCCTGTATGCAT-GTTTTGTGGGTTGACTTTGGCATACGAAGTTCATTCCCA-GTCTAAG-
195 GAGCGCCCGCACGC-TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGC
** * * *
12370858 ATCAGACCAGACCGAAGGTTAC-G--GCA--A-C----A-GGATCGATAGCACACAG-GGGGGAC
258 CCCA-ACCAGACCGAGGGTTGCGGCAGCAGGACCGGTAACGGATCGATAGCACGCAGAGGGGGAC
* * *
12370911 CGAGCTAATCCCCGG-TT----TT-TGCAT-TCT-G-C--C-TCTC
322 CGGGCTGATCCCCGGCTTGCGATTATGCCTCTCTGGCCGACTTCTC
** * * * * * *
12370945 CGACCGGTTGAGCACCTACACGCTCGTTTTGTGGGTTGGCTTAGTCATACAGAGTTCAT-TCCAT
1 CGACCGGTTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCTTACAGAGTTCATCCCCA-
* * * * *
12371009 GTCTAAGCATACGGAGTTCATTCCCAGTCTAACATCAGATCAGACCGAGGGTTACGGTAATAGGA
65 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACC----GTGA--GT--T--G-
* * * * *
12371074 CCAGCAGTAGGATCGGCAGCACACAGGAGGGGACCGGGTGGATCCC-C-GACTTGCACATTCTAC
119 -CGGCAGCAGGATCGGCAGCACACAGG-GGGGATCGAGTCGATCCCTCAG-CTTGCACATTCTAC
** * * * *
12371137 CTCTCCGACTGGCTGAGCACCCTCACGCTCATTTCGTGGGTTGGCTTAAGCATACGGAGTTGATT
181 CTCTCCGACCAGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
* * * *
12371202 CCATGTCTAAGCCCCAACCGGACCGAGGGTTGCGGTAGCAGGACCGGTAACGAGATCAACAGCAC
246 CCATGTCTAAGCCCCAACCAGACCGAGGGTTGCGGCAGCAGGACCGGTAACG-GATCGATAGCAC
12371267 GCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCTGGCCGACTTCTC
310 GCAGAGGGGGACCGGGCTGATCCCCGGCTTGCG-ATTATGCCTCTCTGGCCGACTTCTC
* * * *
12371326 CGATCGGTTAAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCTTACAGAGTTTATCCCCAG
1 CGACCGGTTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCTTACAGAGTTCATCCCCAG
*
12371391 TCTAAGCATACAGAGTTCATTCCCAGTCTATGATCGGATCGGACCGTGAGTTGCGGCAGCAGGAT
66 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGTGAGTTGCGGCAGCAGGAT
* * * *** * * ***
12371456 TGGCAGCATACAGGGGGGATCGAGTCGATCCCTGA-CTTATGCATTCTGCCTCTTCGATTGGCTG
131 CGGCAGCACACAGGGGGGATCGAGTCGATCCCTCAGCTTGCACATTCTACCTCTCCGACCAGCTG
* * ** * *
12371520 AGTGCCCGCACGCTCGTTTCGTGGGTACGCTTAGGCATAGGGAGTTCATTCAATGTCTAAGCCCC
196 AGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
* * * *
12371585 AGCCAGACCAAGGGTTGTGGCAGCGGGACCGGTA
261 AACCAGACCGAGGGTTGCGGCAGCAGGACCGGTA
12371619 GCACACAGAG
Statistics
Matches: 777, Mismatches: 184, Indels: 121
0.72 0.17 0.11
Matches are distributed among these distances:
341 3 0.00
342 90 0.12
343 1 0.00
346 1 0.00
347 2 0.00
348 6 0.01
349 2 0.00
350 1 0.00
354 27 0.03
355 104 0.13
356 19 0.02
358 4 0.01
360 1 0.00
361 1 0.00
362 1 0.00
363 1 0.00
365 4 0.01
366 1 0.00
367 19 0.02
368 248 0.32
369 28 0.04
370 5 0.01
371 1 0.00
372 2 0.00
373 4 0.01
374 2 0.00
375 7 0.01
376 3 0.00
377 4 0.01
378 1 0.00
379 84 0.11
380 4 0.01
381 93 0.12
382 3 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (367 bp):
CGACCGGTTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCTTACAGAGTTCATCCCCAG
TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGTGAGTTGCGGCAGCAGGAT
CGGCAGCACACAGGGGGGATCGAGTCGATCCCTCAGCTTGCACATTCTACCTCTCCGACCAGCTG
AGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
AACCAGACCGAGGGTTGCGGCAGCAGGACCGGTAACGGATCGATAGCACGCAGAGGGGGACCGGG
CTGATCCCCGGCTTGCGATTATGCCTCTCTGGCCGACTTCTC
Found at i:12371623 original size:723 final size:721
Alignment explanation
Indices: 12370211--12371638 Score: 1830
Period size: 723 Copynumber: 2.0 Consensus size: 721
12370201 CTTGGCTTGC
** * *
12370211 GCATTCTACCTCTCGACCGGTTGAGTGCCTGCACATTCATTTCATGGGTTGGCTTAGGCATACAG
1 GCATTCTACCTCTCGACCGGTTGAGCACCTACACACTCATTTCATGGGTTGGCTTAGGCATACAG
** ** *
12370276 AGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAACATTGGATTGGACTGAGGGTT
66 AGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAACATCAGATCAGACCGAGGGTT
* *
12370341 ACGGTAGCAGGACCAGCAGTAGATCGACAGCACACAGGGGGGATCGAGTCGATCCCCAGCTTGCA
131 ACGGTAACAGGACCAGCAGTAGATCGACAGCACACAGGGGGGACCGAGTCGATCCCCAGCTTGCA
* *
12370406 CATTCTACCTCTCCGACCAGCTGAGCGCCCTCACGCTCATTTCATGGGTTGGCTTAGGCATACGG
196 CATTCTACCTCTCCGACCAGCTGAGCACCCTCACGCTCATTTCATGGGTTGGCTTAAGCATACGG
* ** * * *
12370471 AGTTGATTCCATGTCTAAGTCCCAGTCAGACCGAGGGTTGTGGCAGCAGGACCGGTAACGGGATT
261 AGTTGATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGCGGCAGCAGGACCGGTAACGAGATC
*** * * * *
12370536 GGTAGCACGTAGAGGGGGACTAGGCTGATCCCCGACTTGCGTATTATGCCTCTCCGACTGACTTC
326 AACAGCACGCAGAGGGGGACCAGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGACCGACTTC
* * * *
12370601 TCTGGCCGGTTGAGCACCCGCAAACTCGTTTCGTGGGTTGACATAGGCTTACGGAGTTCATCCCC
391 TCCGACCGGTTAAGCACCCGCAAACTCGTTTCGTGGGTTGACATAGGCTTACAGAGTTCATCCCC
* *
12370666 AATCTAAGCATACAGAGATCATTCCCAGTCTAAGATCGGACCGGACCGCGGGTTACGGTAGCAGG
456 AATCTAAGCATACAGAGATCATTCCCAGTCTAAGATCGGACCGGACCGCGAGTTACGGCAGCAGG
* * *
12370731 ATCGACAGCACGCAAGGGGGACTGAGCCGATCCTCAGCTTGCGCATTATGCCTTTTCAACCAGCT
521 ATCGACAGCACACAAGGGGGACTGAGCCGATCCTCAGCTTACGCATTATGCCTCTTCAACCAGCT
* * * * * * * *
12370796 CAGTGCCTGTATGCATGTTTTGTGGGTTGACTTTGGCATACGAAGTTCATTCCCAGTCTAAGATC
586 CAGTGCCCGCACGCATGTTTCGTGGGTCGACTTAGGCATACGAAGTTCATTCCAAGTCTAAGACC
* *
12370861 AGACCAGACCGAAGGTTACGGCAACAGGATCGATAGCACACAG-GGGGGACCGAGCTAATCCCCG
651 AGACCAGACCGAAGGTTACGGCAACAGGACCGATAGCACACAGAGGGGAACCGAGCTAATCCCCG
12370925 GTTTTT
716 GTTTTT
* * * ** *
12370931 GCATTCTGCCTCTCCGACCGGTTGAGCACCTACACGCTCGTTTTGTGGGTTGGCTTAGTCATACA
1 GCATTCTACCTCT-CGACCGGTTGAGCACCTACACACTCATTTCATGGGTTGGCTTAGGCATACA
12370996 GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAACATCAGATCAGACCGAGGGT
65 GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAACATCAGATCAGACCGAGGGT
* * * *
12371061 TACGGTAATAGGACCAGCAGTAGGATCGGCAGCACACAGGAGGGGACCGGGTGGATCCCC-GACT
130 TACGGTAACAGGACCAGCAGTA-GATCGACAGCACACAGG-GGGGACCGAGTCGATCCCCAG-CT
** *
12371125 TGCACATTCTACCTCTCCGACTGGCTGAGCACCCTCACGCTCATTTCGTGGGTTGGCTTAAGCAT
192 TGCACATTCTACCTCTCCGACCAGCTGAGCACCCTCACGCTCATTTCATGGGTTGGCTTAAGCAT
* *
12371190 ACGGAGTTGATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGCGGTAGCAGGACCGGTAACGA
257 ACGGAGTTGATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGCGGCAGCAGGACCGGTAACGA
* * * *
12371255 GATCAACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCTGGCCGA
322 GATCAACAGCACGCAGAGGGGGACCAGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGACCGA
* * * * *
12371320 CTTCTCCGATCGGTTAAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCTTACAGAGTTTAT
387 CTTCTCCGACCGGTTAAGCACCCGCAAACTCGTTTCGTGGGTTGACATAGGCTTACAGAGTTCAT
* * * * * *
12371385 CCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTATGATCGGATCGGACCGTGAGTTGCGGCAG
452 CCCCAATCTAAGCATACAGAGATCATTCCCAGTCTAAGATCGGACCGGACCGCGAGTTACGGCAG
* * * * * * * * *
12371450 CAGGATTGGCAGCATACAGGGGGGA-TCGAGTCGATCC-CTGACTTATGCATTCTGCCTCTTCGA
517 CAGGATCGACAGCACACAAGGGGGACT-GAGCCGATCCTCAG-CTTACGCATTATGCCTCTTCAA
*** * * *
12371513 TTGGCTGAGTGCCCGCACGC-TCGTTTCGTGGGTACG-CTTAGGCATAGGGAGTTCATT-CAATG
580 CCAGCTCAGTGCCCGCACGCAT-GTTTCGTGGGT-CGACTTAGGCATACGAAGTTCATTCCAA-G
* ** * * *
12371575 TCTAAGCCCCAG-CCAGACC-AAGGGTTGTGGCAGCGGGACCGGTAGCACACAGAGGGGAACCGA
642 TCTAAG-ACCAGACCAGACCGAA-GGTTACGGCAACAGGACCGATAGCACACAGAGGGGAACCGA
12371638 G
705 G
12371639 TCGATCCTCG
Statistics
Matches: 600, Mismatches: 96, Indels: 20
0.84 0.13 0.03
Matches are distributed among these distances:
720 12 0.02
721 122 0.20
722 25 0.04
723 427 0.71
724 14 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (721 bp):
GCATTCTACCTCTCGACCGGTTGAGCACCTACACACTCATTTCATGGGTTGGCTTAGGCATACAG
AGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAACATCAGATCAGACCGAGGGTT
ACGGTAACAGGACCAGCAGTAGATCGACAGCACACAGGGGGGACCGAGTCGATCCCCAGCTTGCA
CATTCTACCTCTCCGACCAGCTGAGCACCCTCACGCTCATTTCATGGGTTGGCTTAAGCATACGG
AGTTGATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGCGGCAGCAGGACCGGTAACGAGATC
AACAGCACGCAGAGGGGGACCAGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGACCGACTTC
TCCGACCGGTTAAGCACCCGCAAACTCGTTTCGTGGGTTGACATAGGCTTACAGAGTTCATCCCC
AATCTAAGCATACAGAGATCATTCCCAGTCTAAGATCGGACCGGACCGCGAGTTACGGCAGCAGG
ATCGACAGCACACAAGGGGGACTGAGCCGATCCTCAGCTTACGCATTATGCCTCTTCAACCAGCT
CAGTGCCCGCACGCATGTTTCGTGGGTCGACTTAGGCATACGAAGTTCATTCCAAGTCTAAGACC
AGACCAGACCGAAGGTTACGGCAACAGGACCGATAGCACACAGAGGGGAACCGAGCTAATCCCCG
GTTTTT
Found at i:12371765 original size:159 final size:155
Alignment explanation
Indices: 12371396--12371897 Score: 447
Period size: 159 Copynumber: 3.2 Consensus size: 155
12371386 CCCAGTCTAA
* * * * * * * *
12371396 GCATACAGAGTTCATTCCCAGTCTATGATCGGATCGGACCGTGAGTTGCGGCAGCAGGATTGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGC-GGATCGGCA
* * * * *
12371461 GCATACAGGGGGGATCGAGTCGATCCCTGACTTATGCATTCTGCCTCTTCGATTGGCTGAGTGCC
65 GCACACAGGGGGGACCGAGTCGATCCC-GACTTACGCATTCTGCCTCTTCGACTGGCTGAGCGCC
* *
12371526 CGCACGCTCGTTTCGTGGGTACGCTTAG
129 CGCACGCTCATTTCGTGGGT-TGCTTAG
** * ** * *
12371554 GCATAGGGAGTTCATT-CAATGTCTAAGCCCCAG-CC-AGACCAAGGGTTGTGGCAGCGGGACCG
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCGA-ACCGAGGGTTGTGGCAGC-GGATCG
* * * *
12371616 GTAGCACACAGAGGGGAACCGAGTCGATCCTCGACTTACGCATTATGCCTCTTCGACTGGCTCAG
62 GCAGCACACAG-GGGGGACCGAGTCGATCC-CGACTTACGCATTCTGCCTCTTCGACTGGCTGAG
* * *
12371681 CGCCCGCTCGCTCATTTCATGGGTTGACTTAT
125 CGCCCGCACGCTCATTTCGTGGGTTG-CTTAG
* * *
12371713 ACATACAGAGTTCATTCCCAGTCTAAGATTAGACCGAACCGAGGGTTGTGGCA--GGATCGACAG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCGGATCGGCAG
** * * * * * **
12371776 CACGTTAGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCAACCGGCTGAGCGTT
66 CAC-ACAGGGGGGACCGAGTCGAT-CCCGACTTACGCATTCTGCCTCTTCGACTGGCTGAGCGCC
* *
12371841 CACACGCTCATTTTGTGGGTTGGCTTAG
129 CGCACGCTCATTTCGTGGGTT-GCTTAG
* *
12371869 GGATACGGAGTTCATTCCCAGTCTAAGAT
1 GCATACAGAGTTCATTCCCAGTCTAAGAT
12371898 TTTGAGCCAT
Statistics
Matches: 271, Mismatches: 61, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
156 101 0.37
157 7 0.03
158 51 0.19
159 108 0.40
160 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (155 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCGGATCGGCAG
CACACAGGGGGGACCGAGTCGATCCCGACTTACGCATTCTGCCTCTTCGACTGGCTGAGCGCCCG
CACGCTCATTTCGTGGGTTGCTTAG
Found at i:12372302 original size:26 final size:26
Alignment explanation
Indices: 12372266--12372318 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12372256 GTTGACTTAG
12372266 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12372292 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12372318 G
1 G
12372319 ATCGAACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12372774 original size:158 final size:155
Alignment explanation
Indices: 12372292--12372793 Score: 436
Period size: 158 Copynumber: 3.2 Consensus size: 155
12372282 CCCAGTCTAA
* * * * *
12372292 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACTAGACCGAGGGTTGCGACAGTAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCAGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * * * * ** *
12372356 AGCACGCAGGGGGGATCGGACCGATCACCAGCTTGCGCATTCTACCCCTCCAGCCGACTGAGCGC
65 AGCACGCAGGGGGGACCGGGCTGATCACGA-CTTGTGCATTAT-GCTTTGCAG-CGACTGAGCGC
* * * *
12372421 CCGCACACCCGTTTCGTGGGTTGGCTTAG
127 CCGCACGCTCATTTCATGGGTTGGCTTAG
* ** * * * * *
12372450 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTGTGGCAGCGGGACCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGAACCAGACCGAGGGTTGTGGCAGCAGGATCGGCA
** * * * *
12372515 GCACGCAGAGGGGGACTAGG-TCGATCCCCGACTTGTGCATTATGCATCTCTG-ATCGACTCAAC
66 GCACGCAG-GGGGGACCGGGCT-GAT-CACGACTTGTGCATTATGC-T-T-TGCAGCGACTGAGC
* * *
12372578 GCCTGCATGCTCATTTCATGGGTTGACTTAG
125 GCCCGCACGCTCATTTCATGGGTTGGCTTAG
* * *
12372609 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCAGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * *
12372673 AGCACGCAGGGGGGACCGGGCTAATCTTCGATTTGTGCATTTTGGCTTTGCAGCAGGCTGAGCGC
65 AGCACGCAGGGGGGACCGGGCTGATC-ACGACTTGTGCATTAT-GCTTTGCAGC-GACTGAGCGC
*
12372738 CCGCACGCTCATTTCATTGGTTGGCTTAG
127 CCGCACGCTCATTTCATGGGTTGGCTTAG
*
12372767 GCATACGGAGTTCACTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
12372794 CCCCAGTCCG
Statistics
Matches: 268, Mismatches: 62, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
156 2 0.01
157 10 0.04
158 136 0.51
159 112 0.42
160 7 0.03
161 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGAACCAGACCGAGGGTTGTGGCAGCAGGATCGGCA
GCACGCAGGGGGGACCGGGCTGATCACGACTTGTGCATTATGCTTTGCAGCGACTGAGCGCCCGC
ACGCTCATTTCATGGGTTGGCTTAG
Found at i:12372967 original size:26 final size:26
Alignment explanation
Indices: 12372938--12372990 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12372928 GTTGACTGAG
12372938 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12372964 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12372990 G
1 G
12372991 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12373464 original size:159 final size:157
Alignment explanation
Indices: 12372965--12373457 Score: 467
Period size: 159 Copynumber: 3.1 Consensus size: 157
12372955 CCAGTCTAAG
* * *
12372965 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGGTAG
1 CATACGGAGTTCATTCCCAGTCT-AGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGATAG
* * * * * * * *
12373030 CACGTAAGGGGGG-CGGGGTCGATCCCCGGCATGCGCATTCTGCCTCTTCGGCCGGTTGAGTGCC
65 CACG-CAGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGACGATTGAGCGCC
*
12373094 CGCAGGCCCGTTTCATGGGTTGGCTTAGA
129 CGCAGGCTCGTTTCATGGGTTGGCTTAGA
** * * * *
12373123 CATTGGGAGTTCATT-CCATGTCTA-ATCCCTAG-CCGGACCGAGGGTTGTGGCAGCGGGACCGA
1 CATACGGAGTTCATTCCCA-GTCTAGAT--C-AGACCAGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * * *
12373185 CAGCACGCAAAGGGGGACCGAGTCGATCCCTGGCTTGCGCATTATGCCTCTGC-GACCAGCTCAG
62 TAGCACGC-AGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGACGA-TTGAG
* *
12373249 CGCCCGCACGCTCGTTTCATGGGTTGACTTATG-
125 CGCCCGCAGGCTCGTTTCATGGGTTGGCTTA-GA
* * ** * *
12373282 CATACGGAGTTCATTCCCAGTCTATGATCGGATCAGATTGAGGGTTGCGGTAGTAGGATCGATAG
1 CATACGGAGTTCATTCCCAGTCTA-GATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGATAG
** * *
12373347 CACGCAGGGGGGAACCGGGTCGATCCCTGGCTTATGCATTCTGCCTCTCCGGTCGATTGAGCGCT
65 CACGCAGGGGGG-ACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGACGATTGAGCGCC
* ** *
12373412 CGCAGGCTCATTTTGTGGGTTGGCTTCGA
129 CGCAGGCTCGTTTCATGGGTTGGCTTAGA
12373441 CATACGGAGTTCATTCC
1 CATACGGAGTTCATTCC
12373458 ATGTCTAAGC
Statistics
Matches: 264, Mismatches: 56, Indels: 29
0.76 0.16 0.08
Matches are distributed among these distances:
156 2 0.01
157 4 0.02
158 64 0.24
159 185 0.70
160 7 0.03
161 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
CATACGGAGTTCATTCCCAGTCTAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGATAGC
ACGCAGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGACGATTGAGCGCCCG
CAGGCTCGTTTCATGGGTTGGCTTAGA
Done.