Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 83 of 402
Found at i:12373855 original size:26 final size:26
Alignment explanation
Indices: 12373819--12373871 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12373809 GTTAACTTAG
12373819 GCATACGGAGTTCA-TCCCTAATCTAA
1 GCATACGGAGTTCATTCCC-AATCTAA
*
12373845 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
12373871 G
1 G
12373872 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:12374145 original size:158 final size:158
Alignment explanation
Indices: 12373884--12374347 Score: 476
Period size: 158 Copynumber: 2.9 Consensus size: 158
12373874 CGGATCAGAC
* * * *
12373884 CAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGATCAGGCCGAT-CCTCGGCTTGCGCA
1 CAAGGGTTGTGGCAACAGGATCGGCAGCACGTAGGGGGGATCGGGCCGATCCCT-GGCTTGCGCA
* * * * * * * *
12373948 TTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACACCCGTTTCATGGGTTGCTTAGGCATAGGGA-T
65 TTCTGCCTCTTCGATCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGCTTACGCATACGGAGT
*
12374012 CTCATTCCATGTCTAAGCCCCAG-CCAAAT
130 -TCATTCCATGTCTAAGCACCAGACCAAAT
* * *
12374041 CGAA-GGTTGTGGCAACGGGA-CTGGCAGCACGTAGAGGGGGACCGGGTCGATCCCTGGCTTGCG
1 C-AAGGGTTGTGGCAACAGGATC-GGCAGCACGTAG-GGGGGATCGGGCCGATCCCTGGCTTGCG
* * * * * * *
12374104 CATTATGCCTCTTCGACCAGCTCAGCGCCCGTACGCTCGTTTCATGGGTTGACTTATGCATACGA
63 CATTCTGCCTCTTCGATCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTG-CTTACGCATACGG
* * *
12374169 AGTTCATTCCCA-ATCTAAG-ATCAGACCAGAT
127 AGTTCATT-CCATGTCTAAGCACCAGACCAAAT
* * ** * *
12374200 CAAGGGTTTTGGCAGCAGGATCGATAGCATGTAGGGGGGATCGGGCCGATCCCTGACTTGCGCAT
1 CAAGGGTTGTGGCAACAGGATCGGCAGCACGTAGGGGGGATCGGGCCGATCCCTGGCTTGCGCAT
* * *
12374265 TCTGCCTC-TCTAGTCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTACGCATACGGAG
66 TCTGCCTCTTCGA-TCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTT-GCTTACGCATACGGAG
12374329 TTCATTCCATGTCTAAGCA
129 TTCATTCCATGTCTAAGCA
12374348 TACGGAGTTC
Statistics
Matches: 249, Mismatches: 44, Indels: 26
0.78 0.14 0.08
Matches are distributed among these distances:
156 1 0.00
157 31 0.12
158 157 0.63
159 55 0.22
160 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
CAAGGGTTGTGGCAACAGGATCGGCAGCACGTAGGGGGGATCGGGCCGATCCCTGGCTTGCGCAT
TCTGCCTCTTCGATCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGCTTACGCATACGGAGTT
CATTCCATGTCTAAGCACCAGACCAAAT
Found at i:12374369 original size:26 final size:26
Alignment explanation
Indices: 12374319--12374371 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12374309 GTTGGCTTAC
*
12374319 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
12374345 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
12374371 G
1 G
12374372 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:12375569 original size:26 final size:26
Alignment explanation
Indices: 12375533--12375585 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12375523 GTTGGCTTAG
12375533 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12375559 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12375585 G
1 G
12375586 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12376790 original size:26 final size:26
Alignment explanation
Indices: 12376754--12376806 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12376744 GTTGGCTTAG
12376754 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12376780 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12376806 G
1 G
12376807 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12377496 original size:159 final size:157
Alignment explanation
Indices: 12377214--12377637 Score: 435
Period size: 159 Copynumber: 2.7 Consensus size: 157
12377204 AAGGGGGGTT
* * * * *
12377214 CGGGTCGATCCCCAGCTTGGGCATTTTGCCTCTCCGATCGGCTGAGCGCCCGTACGCCCGTTTCG
1 CGGGTCGATCCCCGGCTTGCGCATTTTGCCTCTCCG-TCGACTGAGCGCCCGAACGCTCGTTTCG
* * * * *
12377279 TGGGTTGGCTAAGGCATAGGGAGTTGATTCCATGTCTAAGCCCCAACCGAAATGAGGGTTGTGGC
65 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAACCGAAATGAGGGTTGCGGC
** *
12377344 AGTGAGACCGGCAGCATGCA-GAGGGGGAC
130 AGCAAGACCGACAGCATGCAGGA-GGGG-C
* * *
12377373 CGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCTGTCGACTGAGTGCCCGAACGCTCGTTTCG
1 CGGGTCGATCCCCGGCTTGCGCATTTTGCCTCTCC-GTCGACTGAGCGCCCGAACGCTCGTTTCG
* * * *
12377438 TGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCG-GATCGAGGGTTGC
65 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCA-ACCGAAAT-GAGGGTTGC
* *
12377500 GGTAGCAAGATCGACAGCATGCAGGAGGGGC
127 GGCAGCAAGACCGACAGCATGCAGGAGGGGC
**** * * * * *
12377531 CATACCGATCTCCGACTTACGCATTTTACCTCTCCAGTCGACTGAGCGCCC-ACACGCTCATTTC
1 CGGGTCGATCCCCGGCTTGCGCATTTTGCCTCTCC-GTCGACTGAGCGCCCGA-ACGCTCGTTTC
* *
12377595 GTGGGTTGGCTTAGGGATACGGAGTTCATTTCATGTCTAAGCA
64 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
12377638 TATGGAGTTC
Statistics
Matches: 218, Mismatches: 39, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
157 3 0.01
158 88 0.40
159 121 0.56
160 6 0.03
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
CGGGTCGATCCCCGGCTTGCGCATTTTGCCTCTCCGTCGACTGAGCGCCCGAACGCTCGTTTCGT
GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAACCGAAATGAGGGTTGCGGCA
GCAAGACCGACAGCATGCAGGAGGGGC
Found at i:12377848 original size:26 final size:26
Alignment explanation
Indices: 12377818--12377867 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
12377808 GTTGACTTAG
12377818 GCATACAGAGTTCATCCCCAGTCTGA
1 GCATACAGAGTTCATCCCCAGTCTGA
*
12377844 GCATACAGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATCCCCAGTCT
12377868 AAGATCAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTGA
Found at i:12378199 original size:26 final size:26
Alignment explanation
Indices: 12378163--12378214 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12378153 TTGGCTTAGA
*
12378163 CATATGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
12378189 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
12378215 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:12384832 original size:26 final size:26
Alignment explanation
Indices: 12384796--12384846 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12384786 TGACTTAGCT
*
12384796 ATACGAAGTTCATCCCCAGTCTAAGC
1 ATACAAAGTTCATCCCCAGTCTAAGC
*
12384822 ATACAAAGTTCATTCCCAGTCTAAG
1 ATACAAAGTTCATCCCCAGTCTAAG
12384847 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.25
Consensus pattern (26 bp):
ATACAAAGTTCATCCCCAGTCTAAGC
Found at i:12385121 original size:159 final size:157
Alignment explanation
Indices: 12384893--12385322 Score: 468
Period size: 159 Copynumber: 2.7 Consensus size: 157
12384883 CAGCACATAA
* ** * * * * * *
12384893 GGGGGACCAGGCCAATCTTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCTCACGCC
1 GGGGGACCGGGCCAATCCCCGACATGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCATGCT
* * * * *
12384958 CGTTTCAAGGGTTAGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCAGACCCAGG
66 CGTTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGACCAGACCAAAG
* * *
12385022 GTTGTGGCAACGGGACTGGCAGCACGCAG
129 GTTGCGGCAACAGGACTGACAGCACGCAG
* * * * *
12385051 AGGGGGATCGGGCCAATCCCCGACATGCGCATTATGCCTCTCCGGCCGGTTCAACGCCCGCATGC
1 -GGGGGACCGGGCCAATCCCCGACATGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCATGC
* ** **
12385116 TCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATCAGACTGGACCAAA
65 TCGTTTCATGGGTTG-CTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAGACCAGACCAAA
* * *
12385180 GGTTGCGGTAGCAGGATTGACAGCACGCAG
128 GGTTGCGGCAACAGGACTGACAGCACGCAG
* * *
12385210 GGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCATGCT
1 GGGGGACCGGGCCAATCCCCGACATGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCATGCT
* * *
12385275 CATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
66 CGTTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12385323 ATACGGAGTT
Statistics
Matches: 223, Mismatches: 43, Indels: 11
0.81 0.16 0.04
Matches are distributed among these distances:
157 3 0.01
158 97 0.43
159 120 0.54
160 3 0.01
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.22
Consensus pattern (157 bp):
GGGGGACCGGGCCAATCCCCGACATGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCATGCT
CGTTTCATGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGACCAGACCAAAGGT
TGCGGCAACAGGACTGACAGCACGCAG
Found at i:12385273 original size:158 final size:158
Alignment explanation
Indices: 12384820--12385321 Score: 494
Period size: 158 Copynumber: 3.2 Consensus size: 158
12384810 CCCAGTCTAA
* * ** * * *
12384820 GCATACAAAGTTCATTCCCA-GTCTAAGATCGGA-TCAGACTGAGGGTTGCAGCAGTAGGATCGA
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAGACT-AGACCAAGGGTTGCGGCAGCAGGATTGA
** * * ** * *
12384883 CAGCACATAAGGGGGACCAGGCCAATCTTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCA
64 CAGCACGCAGGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
* * * *
12384948 CCCTCACGCCCGTTTCAAGGGTT-AGCTTAG
129 CCCGCATGCTCGTTTCATGGGTTGA-CTTAG
* ** ** * * * * * * *
12384978 GTATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCAGACCCAGGGTTGTGGCAACGGGACTGGC
1 GCATACAGAGTTCATTCCATGTCTAAGATC-AGACTAGACCAAGGGTTGCGGCAGCAGGATTGAC
* * * * * *
12385042 AGCACGCAGAGGGGGATCGGGCCAATCCCCGACATGCGCATTATGCCTCTCCGGCCGGTTCAACG
65 AGCACGCAG-GGGGGACCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
12385107 CCCGCATGCTCGTTTCATGGGTTGACTTAG
129 CCCGCATGCTCGTTTCATGGGTTGACTTAG
* * *
12385137 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACTGGACCAAAGGTTGCGGTAGCAGGATTGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAGACTAGACCAAGGGTTGCGGCAGCAGGATTGAC
* *
12385201 AGCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
65 AGCACGCAGGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
* * *
12385266 CCGCATGCTCATTTCGTGGGTTGGCTTAG
130 CCGCATGCTCGTTTCATGGGTTGACTTAG
12385295 GCATAC-GAAGTTCATTCCATGTCTAAG
1 GCATACAG-AGTTCATTCCATGTCTAAG
12385322 CATACGGAGT
Statistics
Matches: 273, Mismatches: 62, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
157 7 0.03
158 142 0.52
159 120 0.44
160 4 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCAGACTAGACCAAGGGTTGCGGCAGCAGGATTGACA
GCACGCAGGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
CGCATGCTCGTTTCATGGGTTGACTTAG
Found at i:12385324 original size:26 final size:26
Alignment explanation
Indices: 12385295--12385347 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12385285 GTTGGCTTAG
12385295 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
12385321 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12385347 G
1 G
12385348 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12385521 original size:26 final size:26
Alignment explanation
Indices: 12385491--12385543 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12385481 GTTGACTTAG
* *
12385491 GCATATGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTGCATCCCCAATCTAA
* *
12385517 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACGGAGTGCATCCCCAATCTAA
12385543 G
1 G
12385544 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTGCATCCCCAATCTAA
Found at i:12385997 original size:158 final size:155
Alignment explanation
Indices: 12385520--12386017 Score: 439
Period size: 158 Copynumber: 3.2 Consensus size: 155
12385510 AATCTAAGCA
* * * *
12385520 TACGGAGTGCATTCCCA-GTCTAAGATCGGATCGGACCAAAGGTTGTTGCAGCAGGATCGATAGC
1 TACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACC-GAGGTTGTGGCAGCAGGATCGATAGC
* * *
12385584 ACGCAGGTGGGACC-AGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCACCC
64 ACGCAGGGGGGACCGA-GCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCT-GCTGAGCGCCC
* * *
12385648 GCATGC-CTGTTTCATGGGTTGGCTTAGGCA
127 GCACGCTC-ATTTCATGGGTT-GCTTAGGCG
* ** * * * * * *
12385678 TAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGAATCGAGGTTGTGGCAGCGGGACCGGTAGCA
1 TACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGAGGTTGTGGCAGCAGGATCGATAGCA
* * ** * * * * *
12385742 CGCAGAGGGGGATCGGGTTGATCCCCAGCTTGGGCATTATGCCTATTCGGCTGACTCAGCGCCCG
65 CGCAG-GGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCTG-CTGAGCGCCCG
* **
12385807 CACGCTCCTTTCATGGGTTGACTTATACG
128 CACGCTCATTTCATGGGTTG-CTTAGGCG
* * * *
12385836 TACGGAGTTCATTCCCAT-TCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAAGATCGACAGT
1 TACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCGA-GGTTGTGGCAGCAGGATCGATAGC
* * * **
12385900 ACACAGGGGGGACCGAACCGATCCCCTGCTTATGCATTCTGCCTCTCCGGCTAGCTGAGCGCCCG
64 ACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCT-GCTGAGCGCCCG
* * *
12385965 CACGCTCATTTCGTGTGTTAGCTTAGGTG
128 CACGCTCATTTCATGGGTT-GCTTAGGCG
*
12385994 TACGAAGTTCATTCCATGTCTAAG
1 TACGGAGTTCATTCCATGTCTAAG
12386018 CATACGGAGT
Statistics
Matches: 264, Mismatches: 63, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
157 39 0.15
158 194 0.73
159 31 0.12
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (155 bp):
TACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGTTGTGGCAGCAGGATCGATAGCAC
GCAGGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCTGCTGAGCGCCCGCAC
GCTCATTTCATGGGTTGCTTAGGCG
Found at i:12386030 original size:26 final size:26
Alignment explanation
Indices: 12385994--12386043 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
12385984 AGCTTAGGTG
12385994 TACGAAGTTCATT-CCATGTCTAAGCA
1 TACGAAGTTCATTCCCA-GTCTAAGCA
*
12386020 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
12386044 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:12386996 original size:26 final size:26
Alignment explanation
Indices: 12386956--12387008 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12386946 GTTGGCTTAG
*
12386956 GCATGCGGAGTTCATT-CCATGTCTAA
1 GCATGCGGAGCTCATTCCCA-GTCTAA
*
12386982 GCATGTGGAGCTCATTCCCAGTCTAA
1 GCATGCGGAGCTCATTCCCAGTCTAA
12387008 G
1 G
12387009 ATCAGACTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATGCGGAGCTCATTCCCAGTCTAA
Found at i:12386999 original size:196 final size:196
Alignment explanation
Indices: 12386660--12387180 Score: 709
Period size: 196 Copynumber: 2.7 Consensus size: 196
12386650 GGATAGTAGG
* * * * *
12386660 ATCGACAGCACACAGGGGGGACCGGGCTGATCCCTGGCTTGCACATTCTGCCTCCCCGGCCGGTT
1 ATCGACAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCT
* * * *
12386725 GAGCGCCTGCTCGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAA
66 GAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAA
* * * * * *
12386790 ACAGAGTTCATTCCTAGTCTAAGATCGGACCGAACTGAGGGTTGTGGTAGCAAGACCAGTAGCAG
131 ACAGAGCTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCAAGACCAGCAGCAG
12386855 A
196 A
* * * * * *
12386856 ATCGACAGCATGCAGGGGGGACCGGGCCGAACCCTGACTTACGCATTCTACCTCTTCGGCCGGCT
1 ATCGACAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCT
* * *
12386921 GAGCGCCCGCACGCTCTTTTCGTGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAAGCAT
66 GAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAA
*** *
12386986 GTGGAGCTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTGCGGTAGCAAGACCAGCAGCAG
131 ACAGAGCTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCAAGACCAGCAGCAG
*
12387051 G
196 A
* * * **
12387052 ATCGACAGCACGCAGGAGGGGATCGGGTCGATCCCTGGCTTGCGCATTTTGCCTCTCCGATCGGC
1 ATCGACAGCACGCAGG-GGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGC
* *
12387117 TGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
65 TGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12387181 CCCAGCCAAA
Statistics
Matches: 281, Mismatches: 43, Indels: 1
0.86 0.13 0.00
Matches are distributed among these distances:
196 183 0.65
197 98 0.35
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (196 bp):
ATCGACAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCT
GAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAA
ACAGAGCTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCAAGACCAGCAGCAG
A
Found at i:12387998 original size:19 final size:20
Alignment explanation
Indices: 12387976--12388013 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
12387966 GACAAAAATC
*
12387976 TTTCTAAAACCGT-AAAAAG
1 TTTCAAAAACCGTGAAAAAG
*
12387995 TTTCAAAAATCGTGAAAAA
1 TTTCAAAAACCGTGAAAAA
12388014 TAGAAAATGG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.50, C:0.13, G:0.11, T:0.26
Consensus pattern (20 bp):
TTTCAAAAACCGTGAAAAAG
Found at i:12388506 original size:12 final size:12
Alignment explanation
Indices: 12388489--12388523 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
12388479 CTGAGGGTTG
12388489 CAGCAGTAGGAC
1 CAGCAGTAGGAC
12388501 CAGCAGTAGGAC
1 CAGCAGTAGGAC
*
12388513 CAGCAGCAGGA
1 CAGCAGTAGGA
12388524 TCGACAGCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.34, C:0.26, G:0.34, T:0.06
Consensus pattern (12 bp):
CAGCAGTAGGAC
Found at i:12389139 original size:158 final size:156
Alignment explanation
Indices: 12388668--12389164 Score: 444
Period size: 158 Copynumber: 3.1 Consensus size: 156
12388658 TCTAAGCAAA
*
12388668 CGGAGTTCATTCCCA-GTCTAAGATCAAACTGGACCGAGGGTTGCGGTAGCAGGATCGACAGCAT
1 CGGAGTTCATT-CCATGTCTAAGATCAAACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCAT
* * * * * *
12388732 GCAGGGGAGATTGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTC-AGCCGGTTGAGTGCCCAC
65 GCAGGGGGGATCGGTCAG-TCC-CCGCTTGCGCATTCTGCCTCTTCGA-CCGGCTGAGTGCCCAC
* * *
12388796 ACGCCCGTTTCATTGGTTGGCTTAGGAATAG
127 ACGCTCGTTTCATGGGTTGGCTTAGGCAT-G
* * ** * ** * * * * *
12388827 -GGAATTCATTCCATGTGTAAGCCCCAGTCGAACCGAGGGTTGTGGTAGCGGGACCGACAGCACG
1 CGGAGTTCATTCCATGTCTAAGATCAAACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCATG
* * * * * * * * * * **
12388891 TAGAAGTGGACCGGGTTAATCCCCCGCTTGCGCATTATGCCTCTTCGGCTGGCTCAACGCCCACA
66 CAG-GGGGGATC-GGTCAGT-CCCCGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGTGCCCACA
* * *
12388956 GGCTCGTTTCGTGGGTTGACTTAGGCATG
128 CGCTCGTTTCATGGGTTGGCTTAGGCATG
** * *
12388985 CGGAGTTCATTCC-TAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGTAAGATCGACAGCAT
1 CGGAGTTCATTCCAT-GTCTAAGATCAAACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCAT
* *
12389049 GCAGGGGGGATCGAGTCAGTCCCCGACTTACGCATTCTGCCTCTTCGACCGGCTGAGTGCCCGCA
65 GCAGGGGGGATCG-GTCAGTCCCCG-CTTGCGCATTCTGCCTCTTCGACCGGCTGAGTGCCCACA
** * *
12389114 TACTCATTTCATGGGTTGGCTTAGGCATA
128 CGCTCGTTTCATGGGTTGGCTTAGGCATG
12389143 CGGAGTTCATTCCATGTCTAAG
1 CGGAGTTCATTCCATGTCTAAG
12389165 CATACGAAGT
Statistics
Matches: 256, Mismatches: 72, Indels: 21
0.73 0.21 0.06
Matches are distributed among these distances:
157 9 0.04
158 134 0.52
159 109 0.43
160 4 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
CGGAGTTCATTCCATGTCTAAGATCAAACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCATG
CAGGGGGGATCGGTCAGTCCCCGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGTGCCCACACGC
TCGTTTCATGGGTTGGCTTAGGCATG
Found at i:12389298 original size:184 final size:184
Alignment explanation
Indices: 12388988--12389349 Score: 449
Period size: 184 Copynumber: 2.0 Consensus size: 184
12388978 AGGCATGCGG
* * * ** * *
12388988 AGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGTAAGATCGACAGCATGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAAGATCGACAGCACGCAA
* * * **
12389053 GGGGGATCGAGTCAGTCCCCGACTTACGCATTCTGCCTCTTCGACCGGCTGAGTGCCCGCATACT
66 GGGGGATCGAGCCAGTCCCCGACTTACACATTCTGCCTCTTCGACCGACTGAGCACCCGCATACT
12389118 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGA
131 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGA
* * * **
12389172 AGTTCATTCCCAGTTTAAGATCAGATCAGACCGAGGGTTGCGACAGTAGGATCGGTAGCACGCAA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAAGATCGACAGCACGCAA
* * * * ** *
12389237 GGGGGATCGGGCC-GATCCTCGGCTTGCACATTCTGCCTC-TCTGGTCGACTGAGCACCCGCATG
66 GGGGGATCGAGCCAG-TCCCCGACTTACACATTCTGCCTCTTC-GACCGACTGAGCACCCGCATA
** *
12389300 CTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
129 CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12389350 CCCAGTCGGA
Statistics
Matches: 149, Mismatches: 27, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
183 3 0.02
184 146 0.98
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.25
Consensus pattern (184 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAAGATCGACAGCACGCAA
GGGGGATCGAGCCAGTCCCCGACTTACACATTCTGCCTCTTCGACCGACTGAGCACCCGCATACT
CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGA
Found at i:12389537 original size:26 final size:26
Alignment explanation
Indices: 12389507--12389557 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12389497 TTGACTTAGG
12389507 CATACGGAGTTCATCCCCAATCTAAC
1 CATACGGAGTTCATCCCCAATCTAAC
* *
12389533 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAATCTAA
12389558 GATCGAACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAATCTAAC
Found at i:12390247 original size:26 final size:26
Alignment explanation
Indices: 12390218--12390270 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12390208 GTTGACTTAG
12390218 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
12390244 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12390270 G
1 G
12390271 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12391902 original size:26 final size:26
Alignment explanation
Indices: 12391873--12391923 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12391863 TGACTTAGAA
*
12391873 ATACGGAGTTTATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
12391899 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
12391924 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:12392537 original size:21 final size:19
Alignment explanation
Indices: 12392487--12392532 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
12392477 GAGGGTTGTG
* *
12392487 GCAGTGGGAACAGCAGCAC
1 GCAGAGGGACCAGCAGCAC
12392506 GCAGAGGGACCAGCAGCAC
1 GCAGAGGGACCAGCAGCAC
12392525 GCAGAGGG
1 GCAGAGGG
12392533 GGACCGGGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.41, T:0.02
Consensus pattern (19 bp):
GCAGAGGGACCAGCAGCAC
Found at i:12393254 original size:26 final size:26
Alignment explanation
Indices: 12393225--12393274 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
12393215 GTTGACTTAG
12393225 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
12393251 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
12393275 GAGATCAGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12393567 original size:159 final size:160
Alignment explanation
Indices: 12393387--12394572 Score: 471
Period size: 159 Copynumber: 7.3 Consensus size: 160
12393377 CGCCCACACA
* * * * * *
12393387 CTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ATCGGAGCGA
1 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGA
* ** ** * * * *
12393451 GGGTTGTGGCAGTGGGATCGGTAGCACGTAGAGGGGGACC-GAGCCGATCC-TCGGCTTGCGTAT
66 GGGTTGTGACAGCAGGATCGACAGCACGTAGAGGGGGACCGGA-CCAATCCAT-GACTTGAGCAT
* *
12393514 TATGCCTCTCTGGTCGGCTCAGTGCCCGCAAG
129 TATGCCTCTCCGATCGGCTCAGTGCCCGCAAG
* * *
12393546 CTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCG
1 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCG
*
12393609 AGGGTTGTGACAGCAGGATCGACAGCACGTAGAGTGGGACCGGACCAATCCATGACTTGAGCATT
65 AGGGTTGTGACAGCAGGATCGACAGCACGTAGAGGGGGACCGGACCAATCCATGACTTGAGCATT
* * * *
12393674 CTGCCTCTCCGATCGGTTGAGTGCCCGCACG
130 ATGCCTCTCCGATCGGCTCAGTGCCCGCAAG
* * * ** **
12393705 CTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGCCTAAGCATACGGAGTTCATTC
1 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC--AC-CAGACCAGAC
* ** *
12393770 CCAGTCTAAGATCGGATCAG-AGTGAGGGTTGCAGCAGCAGGATCGACAGCACATAG-GGGGGAC
63 CGAGGGT-TG-T--GA-CAGCAG-GA----T-C-G-A-CA-G--C-AC-G----TAGAGGGGGAC
* * ** * * * * * * * ** *
12393833 TAGG-CCACTCCCCGGCTTGTGCATTCTGGCTCTCC-AGCCGGTTGAGCACCCGCACG
105 -CGGACCAATCCATGACTTGAGCATTATGCCTCTCCGA-TCGGCTCAGTGCCCGCAAG
* * * * * * *
12393889 CTTGTTTTATGGGTTGGCTTGGGAATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCAA
1 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGA
* * * * * * * ** * *
12393953 GGGTTGTGGCAGCGGGACCGACAGCACGCAGAGAGGGACCCGG-TCGATCCCCGGCTTGCGCATT
66 GGGTTGTGACAGCAGGATCGACAGCACGTAGAGGGGGA-CCGGACCAATCCATGACTTGAGCATT
* * * *
12394017 ATGCCTCTCCGACCGGCTCAGCGCCCTCACG
130 ATGCCTCTCCGATCGGCTCAGTGCCCGCAAG
* * * * *
12394048 CTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCA-ATCTAAG-ATCGGACCAGACCG
1 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCG
** * * * * * * * *
12394111 AGGGTTACGACAGCAGCATC-AGTAGCACGCAG-GGGTGGATCGGGCCGATCCCT-AGCTTGCGC
65 AGGGTTGTGACAGCAGGATCGA-CAGCACGTAGAGGG-GGACCGGACCAATCCATGA-CTTGAGC
* * * * *
12394173 ATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACG
127 ATTATGCCTCTCCGATCGGCTCAGTGCCCGCAAG
* * * * * * * *
12394207 CCCATTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTGCATGTCTAAGCCCCAG-CCGGACCGA
1 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGA
* ** * * * * * ** * ** * *
12394271 GGGTTGCGGTAGCCA-GACCGGCAGCTCGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATT
66 GGGTTGTGACAG-CAGGATCGACAGCACGTAGAGGGGGACCGGACCAATCCATGACTTGAGCATT
* * * ** ** *
12394335 ATGCCTCTCCG-GCTGCTTAGCACCCTTACG
130 ATGCCTCTCCGATCGGCTCAGTGCCCGCAAG
* * * * * *
12394365 CTCGTTTCGTGGGTTGACTTAGGCATAC-GATGTTCATTCTCA-GTTTAAG-ATCAAACCAGATC
1 CTCGTTTCATGGGTTGGCTTAGGCATACGGA-GTTCATTC-CATGTCTAAGCACCAGACCAGACC
* ** ** * * * ** * * * *
12394427 GAGGGTTGCGGTAATAGGATCGATAGCACG--CAGGGGGACCGGGCCGGTCCCTGGCTTGCGTAT
64 GAGGGTTGTGACAGCAGGATCGACAGCACGTAGAGGGGGACCGGACCAATCCATGACTTGAGCAT
* * * *
12394490 TTTGCCTTTCCGA-CTGGCTGAGCGCCCGCACA-
129 TATGCCTCTCCGATC-GGCTCAGTGCCCGCA-AG
* * *
12394522 CTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCTTGTCTAAGCA
1 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
12394573 TACGGAGTTC
Statistics
Matches: 791, Mismatches: 176, Indels: 121
0.73 0.16 0.11
Matches are distributed among these distances:
156 39 0.05
157 55 0.07
158 96 0.12
159 426 0.54
160 18 0.02
162 2 0.00
163 11 0.01
164 2 0.00
165 1 0.00
166 1 0.00
167 6 0.01
168 6 0.01
169 1 0.00
170 1 0.00
172 1 0.00
173 1 0.00
174 1 0.00
175 6 0.01
176 4 0.01
177 1 0.00
178 1 0.00
179 2 0.00
180 9 0.01
181 3 0.00
182 1 0.00
183 1 0.00
184 90 0.11
185 5 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (160 bp):
CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGA
GGGTTGTGACAGCAGGATCGACAGCACGTAGAGGGGGACCGGACCAATCCATGACTTGAGCATTA
TGCCTCTCCGATCGGCTCAGTGCCCGCAAG
Found at i:12394114 original size:502 final size:502
Alignment explanation
Indices: 12393167--12394256 Score: 1337
Period size: 502 Copynumber: 2.2 Consensus size: 502
12393157 CCCGGCTTAT
* * * * * * * *
12393167 GCATCCTGCCTCTCTGGTCGGCTGAGAGTCTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACG
1 GCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* * *
12393232 GAGTTCA-TCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTGAGATCAGACTGGACCGAGGG
66 GAGTTCATTCCAT-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGG
* * * * * * *
12393296 TTGCGGCAGCAAGATTGGCAGCACATAGTGGGGATTGGGCCAGTCCCCGACTTGCGCATTCTACC
130 TTGCAGCAGCAAGATCGACAGCACATAGGGGGGACTAGGCCACTCCCCGACTTGCGCATTCTACC
* * * * * *
12393361 TCTTCGGTCGGTTGAGCGCCCACACACTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTC
195 TCTCCAGCCGGTTGAGCACCCACACACTCGTTTCATGGGTTGGCTTAGGAATAGGGAGTTCATTC
* * * * * * ** * *
12393426 CATGTCTAAGCCCCAATCGGAGCGAGGGTTGTGGCAGTGGGATCGGTAGCACGTAGAGGGGGACC
260 CATGTCTAAGCCCCAACCAGACCAAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGAGGGACC
* * * ** *
12393491 GAGCCGATCCTCGGCTTGCGTATTATGCCTCTCTGGTCGGCTCAGTGCCCGCAAGCTCGTTTCAT
325 GAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCAAGCTCGTTTCAT
* **
12393556 AGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACA
390 AGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGACA
* * *
12393621 GCAGGATC-GACAGCACGTA-GAGTGGGACCGGACCAATCCAT-GACTTGA
455 GCAGCATCAG-CAGCACGCAGGGGT-GGACCGGACCAATCCATAG-CTTGA
* * * *
12393669 GCATTCTGCCTCTCCGATCGGTTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACA
1 GCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* * **
12393734 GAGTTCATTCCATGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCAGAGTGAGGG
66 GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACCGAGGG
* * * **
12393798 TTGCAGCAGCAGGATCGACAGCACATAGGGGGGACTAGGCCACTCCCCGGCTTGTGCATTCTGGC
130 TTGCAGCAGCAAGATCGACAGCACATAGGGGGGACTAGGCCACTCCCCGACTTGCGCATTCTACC
* * * * *
12393863 TCTCCAGCCGGTTGAGCACCCGCACGCTTGTTTTATGGGTTGGCTTGGGAATAGGGAGTTCATTC
195 TCTCCAGCCGGTTGAGCACCCACACACTCGTTTCATGGGTTGGCTTAGGAATAGGGAGTTCATTC
*
12393928 CATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGAGGGACC
260 CATGTCTAAGCCCCAACCAGACCAAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGAGGGA-C
* * *
12393993 CG-GTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCTCACGCTCGTTTCA
324 CGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCAAGCTCGTTTCA
* * *
12394057 TGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTACGAC
389 TAGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGAC
* * * * * *
12394122 AGCAGCATCAGTAGCACGCAGGGGTGGATCGGGCCGATCCCTAGCTTGC
454 AGCAGCATCAGCAGCACGCAGGGGTGGACCGGACCAATCCATAGCTTGA
* * * * *
12394171 GCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGTATAGG
1 GCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
*
12394236 GAGTTCATTGCATGTCTAAGC
66 GAGTTCATTCCATGTCTAAGC
12394257 CCCAGCCGGA
Statistics
Matches: 495, Mismatches: 87, Indels: 12
0.83 0.15 0.02
Matches are distributed among these distances:
501 1 0.00
502 482 0.97
503 12 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (502 bp):
GCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGT
TGCAGCAGCAAGATCGACAGCACATAGGGGGGACTAGGCCACTCCCCGACTTGCGCATTCTACCT
CTCCAGCCGGTTGAGCACCCACACACTCGTTTCATGGGTTGGCTTAGGAATAGGGAGTTCATTCC
ATGTCTAAGCCCCAACCAGACCAAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGAGGGACCG
AGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCAAGCTCGTTTCATA
GGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGACAG
CAGCATCAGCAGCACGCAGGGGTGGACCGGACCAATCCATAGCTTGA
Found at i:12394577 original size:26 final size:26
Alignment explanation
Indices: 12394541--12394596 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
12394531 TGGGTTGGCT
**
12394541 TAAGCATACGGAGTTCATTCCTTGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
12394567 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
12394593 TAAG
1 TAAG
12394597 ATTGGACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:12395496 original size:26 final size:26
Alignment explanation
Indices: 12395460--12395512 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12395450 GTTGACTTAG
12395460 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
12395486 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
12395512 G
1 G
12395513 GTCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:12396210 original size:24 final size:24
Alignment explanation
Indices: 12396183--12396270 Score: 131
Period size: 24 Copynumber: 3.5 Consensus size: 24
12396173 GGGTGCTGGT
12396183 ACTCTTTCTAAATTTGGGGACAAA
1 ACTCTTTCTAAATTTGGGGACAAA
*
12396207 ACTCTTTCTAAAAAAATTTAGGGACAAA
1 ACTCTTTCT----AAATTTGGGGACAAA
12396235 ACTCTTTCTAAATTTGGGGACAAA
1 ACTCTTTCTAAATTTGGGGACAAA
12396259 ACTCTTTCTAAA
1 ACTCTTTCTAAA
12396271 AAATTTTTAA
Statistics
Matches: 58, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
24 35 0.60
28 23 0.40
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (24 bp):
ACTCTTTCTAAATTTGGGGACAAA
Found at i:12396224 original size:28 final size:28
Alignment explanation
Indices: 12396192--12396273 Score: 127
Period size: 28 Copynumber: 3.1 Consensus size: 28
12396182 TACTCTTTCT
12396192 AAATTTGGGGACAAAACTCTTTCTAAAA
1 AAATTTGGGGACAAAACTCTTTCTAAAA
*
12396220 AAATTTAGGGACAAAACTCTTTCT----
1 AAATTTGGGGACAAAACTCTTTCTAAAA
12396244 AAATTTGGGGACAAAACTCTTTCTAAAA
1 AAATTTGGGGACAAAACTCTTTCTAAAA
12396272 AA
1 AA
12396274 TTTTTAAAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
24 23 0.48
28 25 0.52
ACGTcount: A:0.43, C:0.15, G:0.13, T:0.29
Consensus pattern (28 bp):
AAATTTGGGGACAAAACTCTTTCTAAAA
Found at i:12397785 original size:26 final size:26
Alignment explanation
Indices: 12397749--12397801 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12397739 GTTGACTTAG
12397749 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
12397775 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12397801 G
1 G
12397802 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12398130 original size:159 final size:159
Alignment explanation
Indices: 12397775--12398163 Score: 401
Period size: 159 Copynumber: 2.4 Consensus size: 159
12397765 CCCAGTCTAA
* *
12397775 GCATATGGAGTTCATTCCTAGTCTAAGATCGGA-TCGGATCGAGGGTTGCGACAGCAGGATCGAC
1 GCATATGGAGTTCATTCCTAGTCTAAGATCGGACT-GGATCGAGGGTTGCGACACCAGGAACGAC
* * * * *
12397839 AGCACGCAAGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCG
65 AGCACGCAAAGGGGGACCGGGCCGATCCTCGGCTTACGCATTATGCCTCTCCGACCGGCTCAGCG
* ** * *
12397904 CCCGTATGCCCGTTTCGTGGTTTGGCTTAG
130 CCCGCACACCCGTTTCATGGTTTGACTTAG
* * * * ** * * * *
12397934 GCATAGGGAGTTTATTCCTTGTATAATCTC-CAGCTGGATCGAGGGTTGTGGCACCGGGAACGAC
1 GCATATGGAGTTCATTCCTAGTCTAAGATCGGA-CTGGATCGAGGGTTGCGACACCAGGAACGAC
* * * **
12397998 AGCATGCAAAGTGGGATCGGGCCGATCCTCGGCTTACGCATTATGCCTCTCCGGTCGGCTCAGCG
65 AGCACGCAAAGGGGGACCGGGCCGATCCTCGGCTTACGCATTATGCCTCTCCGACCGGCTCAGCG
** *
12398063 CCCGCACACTTGTTTCATAGG-TTGACTTTG
130 CCCGCACACCCGTTTCAT-GGTTTGACTTAG
* * *
12398093 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGA-CTGAGGGTTGC-AGCAGCAGGATCGA
1 GCATATGGAGTTCATTCCTAGTCTAAGATCGGACTGGATC-GAGGGTTGCGA-CACCAGGAACGA
12398156 CAGCACGC
64 CAGCACGC
12398164 TGGGGGGATT
Statistics
Matches: 180, Mismatches: 44, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
158 2 0.01
159 174 0.97
160 4 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
GCATATGGAGTTCATTCCTAGTCTAAGATCGGACTGGATCGAGGGTTGCGACACCAGGAACGACA
GCACGCAAAGGGGGACCGGGCCGATCCTCGGCTTACGCATTATGCCTCTCCGACCGGCTCAGCGC
CCGCACACCCGTTTCATGGTTTGACTTAG
Found at i:12398288 original size:26 final size:26
Alignment explanation
Indices: 12398251--12398303 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12398241 GTTGGCTTAG
12398251 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
*
12398277 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
12398303 G
1 G
12398304 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:12398624 original size:171 final size:172
Alignment explanation
Indices: 12398316--12398630 Score: 393
Period size: 171 Copynumber: 1.8 Consensus size: 172
12398306 CGGACCAGAC
* * *
12398316 CGAGGGTTACGGCAGCAGGACCAATAGCAGGATCGACAGCACGCAGGGGAGGGATCGGGCCGATC
1 CGAGGGTTACGGCAGCAGGACCAATAGCAGGATCGACAACACGCAGGAGAGGGATCGGGCCAATC
* * * * * * *
12398381 CTCGGCTTGCACATTTTGCCTCTCCGATCGGTTGAGCTCCCGCACGCTCGTTTTGTGGGTTGGCT
66 CTCGGCTTACACATTATGCCACTCCGACCGGCTGAGCTCCCGCACGCTCGTTTTATGGGTTGACT
12398446 TAGGCATACAGAGTACATTCCATGTCTAAGCCCCAATCGGAT
131 TAGGCATACAGAGTACATTCCATGTCTAAGCCCCAATCGGAT
** ** * * * *
12398488 CGAGGGTTGTGGCAGCAGGACCTGTAGCGGGATCGGCAACACGCA-GAGTGGGATCGGGCTAAT-
1 CGAGGGTTACGGCAGCAGGACCAATAGCAGGATCGACAACACGCAGGAGAGGGATCGGGCCAATC
* * *
12398551 CTCCGGCTTACGCATTATGCCACTCCGACCGGCTGAG-TGCCCGCACTCTTGTTTTATGGGTTGA
66 CT-CGGCTTACACATTATGCCACTCCGACCGGCTGAGCT-CCCGCACGCTCGTTTTATGGGTTGA
*
12398615 CTTAGGCATACGGAGT
129 CTTAGGCATACAGAGT
12398631 TCATCCCTAG
Statistics
Matches: 119, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
170 3 0.03
171 78 0.66
172 38 0.32
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (172 bp):
CGAGGGTTACGGCAGCAGGACCAATAGCAGGATCGACAACACGCAGGAGAGGGATCGGGCCAATC
CTCGGCTTACACATTATGCCACTCCGACCGGCTGAGCTCCCGCACGCTCGTTTTATGGGTTGACT
TAGGCATACAGAGTACATTCCATGTCTAAGCCCCAATCGGAT
Found at i:12398672 original size:26 final size:26
Alignment explanation
Indices: 12398620--12398672 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12398610 GTTGACTTAG
* *
12398620 GCATACGGAGTTCATCCCTAGTTTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
12398646 GCATACGAAGTTCATTCCC-AGTCTAA
1 GCATACGAAGTTCA-TCCCTAGTCTAA
12398672 G
1 G
12398673 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:12398841 original size:26 final size:26
Alignment explanation
Indices: 12398804--12398856 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
12398794 GTTGGCTTAG
12398804 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
12398830 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
12398856 G
1 G
12398857 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12399561 original size:25 final size:26
Alignment explanation
Indices: 12399523--12399574 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
12399513 GTTGACTTAG
*
12399523 GCATATAGAGTTCATACCCAGCCTAA
1 GCATACAGAGTTCATACCCAGCCTAA
* *
12399549 GCATACAG-GTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATACCCAGCCTAA
12399574 G
1 G
12399575 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAGCCTAA
Found at i:12407439 original size:159 final size:157
Alignment explanation
Indices: 12407191--12407652 Score: 469
Period size: 159 Copynumber: 2.9 Consensus size: 157
12407181 GACCAGACCG
* * * ** * * *
12407191 AGGGTTGCGACAGCAGGATCGGCAGGACGCAGGGGGGATCGGGCTGATCCCCGACTTGCACATTC
1 AGGGTTGCGACAGCAGGACCGACAGCACATAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTC
* * * * * *
12407256 TGCCTCTCCGATCGGCTGAGCGCCCTCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTC
66 TGCCTCTCCGGTCGGCT-AACGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
* *
12407321 ATTCCATGTCTAAGCCCCAA-CCGGACCG
130 ATTCCATGTCTAAGCCCCAATCAGG-CCA
* * * ** * * *
12407349 AGGGTTGTGCCAGCGGGACCGACAGTGCGTAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATT
1 AGGGTTGCGACAGCAGGACCGACAGCACATAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATT
* * * * *
12407414 ATGCCTCTCCGGTCGGCTCAACGCCCGAATGCTCGTTTCGTGGTTTGACTTAGGCATACAGAGTT
65 CTGCCTCTCCGGTCGGCT-AACGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
**** *
12407479 CATTCCCA-GTCTAAGATTGAATCAGGTCA
129 CATT-CCATGTCTAAGCCCCAATCAGGCCA
* * * *
12407508 AGGGTTGCGACAGCAGGATCGACAGCACATAGGGGGGATCGGGCCGGTCCCCTGCTTACGCATTC
1 AGGGTTGCGACAGCAGGACCGACAGCACATAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTC
* * * * *
12407573 TGCCTCTCTGGCCGGCTAAGCGCCCGCATGCTCATTTCGTAGGTTGGCTTAGGCATATGGAGTTC
66 TGCCTCTCCGGTCGGCTAA-CGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
12407638 ATTCCATGTCTAAGC
130 ATTCCATGTCTAAGC
12407653 ATACGGAGTT
Statistics
Matches: 244, Mismatches: 55, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
157 5 0.02
158 114 0.47
159 119 0.49
160 6 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
AGGGTTGCGACAGCAGGACCGACAGCACATAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTC
TGCCTCTCCGGTCGGCTAACGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
TTCCATGTCTAAGCCCCAATCAGGCCA
Found at i:12407611 original size:158 final size:155
Alignment explanation
Indices: 12407150--12407651 Score: 506
Period size: 158 Copynumber: 3.2 Consensus size: 155
12407140 CCCAGTCTAA
* * * *
12407150 GCATACGAAGTTCATTCCCA-GTCTAAGATTGGACCAGACCGAGGGTTGCGACAGCAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATT-GAACAGGCCGAGGGTTGCGACAGCAGGATCGAC
* * * * * *
12407214 AGGACGCAGGGGGGATCGGGCTGATCCCCGACTTGCACATTCTGCCTCTCCGATCGGCTGAGCGC
64 AGCACGTAGGGGGGATCGGGCCGATCCCCG-CTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGC
* * *
12407279 CCTCACGCCCGTTTCGTGGGTTGGCTTAG
128 CCGCATGCTCGTTTCGT-GGTTGGCTTAG
* **** * * * * *
12407308 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGCCAGCGGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATTGAACAGG-CCGAGGGTTGCGACAGCAGGATCGACA
** * * *
12407373 GTGCGTAGAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGGTCGGCTCAA-CG
65 GCACGTAG-GGGGGATCGGGCCGATCCCC-GCTTGCGCATTCTGCCTCTCCGGTCGGCT-AAGCG
* *
12407437 CCCGAATGCTCGTTTCGTGGTTTGACTTAG
127 CCCGCATGCTCGTTTCGTGG-TTGGCTTAG
* * *
12407467 GCATACAGAGTTCATTCCCA-GTCTAAGATTGAATCAGGTCAAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATTGAA-CAGGCCGAGGGTTGCGACAGCAGGATCGAC
* * * * *
12407531 AGCACATAGGGGGGATCGGGCCGGTCCCCTGCTTACGCATTCTGCCTCTCTGGCCGGCTAAGCGC
64 AGCACGTAGGGGGGATCGGGCCGATCCCC-GCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGC
*
12407596 CCGCATGCTCATTTCGTAGGTTGGCTTAG
128 CCGCATGCTCGTTTCGT-GGTTGGCTTAG
*
12407625 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
12407652 CATACGGAGT
Statistics
Matches: 275, Mismatches: 58, Indels: 22
0.77 0.16 0.06
Matches are distributed among these distances:
157 11 0.04
158 139 0.51
159 117 0.43
160 8 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATTGAACAGGCCGAGGGTTGCGACAGCAGGATCGACAG
CACGTAGGGGGGATCGGGCCGATCCCCGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCCCG
CATGCTCGTTTCGTGGTTGGCTTAG
Found at i:12407872 original size:26 final size:26
Alignment explanation
Indices: 12407816--12407873 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
12407806 CGTTTGTTGA
* *
12407816 CCTAGGCATACGGAGTTTATCCCCAG
1 CCTAAGCATACGGAGTTCATCCCCAG
* * *
12407842 TCTAAGCATACGGAGTTCATTCCTAG
1 CCTAAGCATACGGAGTTCATCCCCAG
12407868 CCTAAG
1 CCTAAG
12407874 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
CCTAAGCATACGGAGTTCATCCCCAG
Found at i:12408923 original size:26 final size:26
Alignment explanation
Indices: 12408887--12408939 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12408877 GTTGACTTAC
*
12408887 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
12408913 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
12408939 G
1 G
12408940 ATCAGATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:12409261 original size:26 final size:26
Alignment explanation
Indices: 12409231--12409281 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12409221 TTGGCTTAGG
12409231 CATACGGAGTTCATTCCAT-GTCTAAA
1 CATACGGAGTTCATT-CATAGTCTAAA
12409257 CATACGGAGTTCATTCATAGTCTAA
1 CATACGGAGTTCATTCATAGTCTAA
12409282 GAGTTTGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCATAGTCTAAA
Found at i:12409991 original size:26 final size:26
Alignment explanation
Indices: 12409951--12410029 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
12409941 GTTGACTTAG
*
12409951 GCATACGGAGCTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12409977 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12410003 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12410029 G
1 G
12410030 ATCAGACTGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12410353 original size:26 final size:26
Alignment explanation
Indices: 12410323--12410375 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12410313 GTTGGCTTAG
*
12410323 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12410349 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12410375 G
1 G
12410376 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12411529 original size:159 final size:158
Alignment explanation
Indices: 12411062--12411564 Score: 490
Period size: 159 Copynumber: 3.2 Consensus size: 158
12411052 TCCAGTCTAA
* * * *
12411062 GCATACGGAGTTCATT-CGTAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGGT
1 GCATACGAAGTTCATTCCAT-GTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATCGGT
** * * *
12411126 AGCACACAGGGGGGACCGGGCTGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCAC
65 AGCACACAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCAC
* * *
12411191 CCACACGCCCGTTTCATGCGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * ** * * * ** *
12411220 GCATAGGGAGTTCATTCCATGCCTAAGCCCCAGCT-GGACCGAGGGTTGTGGCAGTGGGACCGGT
1 GCATACGAAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGAGGGTTGCGACAGCAGGATCGGT
** * * * * * * *
12411284 AGCACGTAGAGGGGGACCGGGCCTATCCCCGGCTTGCGCATTATGCCTCTTCGGCCTGCTCAGCG
65 AGCACACAG-GGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCA
* * ** **
12411349 CCCGCAAGCTCATTTTGTGGGTTGAATTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * **
12411379 GCATACGAAGTTCATTCCCA-GTCTAAGATTAGATCGGACTGAGGGTTACGACAGCAGGATCGAC
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATCGGT
* * *
12411443 AGCACACAGGGAGGGATCGGGCCAACCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCA
65 AGCACACAGGG-GGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCA
* * *
12411508 CCTGTACGTTCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
12411538 GCATACAAAGTTCATTCCATGTCTAAG
1 GCATACGAAGTTCATTCCATGTCTAAG
12411565 CATACAGAGT
Statistics
Matches: 265, Mismatches: 73, Indels: 13
0.75 0.21 0.04
Matches are distributed among these distances:
158 60 0.23
159 202 0.76
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATCGGTA
GCACACAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:12411568 original size:26 final size:26
Alignment explanation
Indices: 12411538--12411590 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12411528 GTTGGCTTAG
12411538 GCATACAAAGTTCATTCC-ATGTCTAA
1 GCATACAAAGTTCATTCCTA-GTCTAA
*
12411564 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATTCCTAGTCTAA
12411590 G
1 G
12411591 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCTAGTCTAA
Found at i:12411764 original size:26 final size:26
Alignment explanation
Indices: 12411734--12411786 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12411724 GTTGGCTTAG
12411734 GCATACAAAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
**
12411760 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
12411786 G
1 G
12411787 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:12411764 original size:196 final size:197
Alignment explanation
Indices: 12411429--12411884 Score: 596
Period size: 196 Copynumber: 2.3 Consensus size: 197
12411419 GAGGGTTACG
* *
12411429 ACAGCAGGATCGACAGCACACAGGGAGGGATCGGGCCAACCCCCGGCTTGCGCATTCTGCCTCTC
1 ACAGCAGGATCGACAGCACACAGGGAGGGATCGAGCCAACCCCCGGCTTGCGCATTCTACCTCTC
* * *
12411494 CGATCGGCTGAGCACCTGTACGTTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATG
66 CGATCGGCTGAGCACCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATG
* *
12411559 TCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGGACCGGACTGCGGGTTGCGATAGCAGGAC
131 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGCGGGTTGCGATAGCAGGAC
12411624 CA
196 CA
* * *
12411626 ACAGCAGGATCGATAGCACACAGGG-GGGA-CTGAGCCAATCCCTGGCTTGCGCATTCTACCTCT
1 ACAGCAGGATCGACAGCACACAGGGAGGGATC-GAGCCAACCCCCGGCTTGCGCATTCTACCTCT
* * **
12411689 CTGATCGGTTGAGTGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCAT
65 CCGATCGGCTGAGCACCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCAT
* * * * **
12411754 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGATTGCAGCCA-CAGG
130 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGCGGGTTGC-GATAGCAGG
12411818 A-CA
194 ACCA
* * ** * * * * *
12411821 AGCAACAGGATCGGCAGCACGTAGGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTACCTC
1 A-CAGCAGGATCGACAGCACACAGGGAGGGATCGAGCCAACCCCCGGCTTGCGCATTCTACCTC
12411885 GTCGACTGGC
Statistics
Matches: 225, Mismatches: 29, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
195 4 0.02
196 163 0.72
197 57 0.25
198 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (197 bp):
ACAGCAGGATCGACAGCACACAGGGAGGGATCGAGCCAACCCCCGGCTTGCGCATTCTACCTCTC
CGATCGGCTGAGCACCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATG
TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGCGGGTTGCGATAGCAGGAC
CA
Found at i:12412331 original size:551 final size:532
Alignment explanation
Indices: 12411627--12412614 Score: 1203
Period size: 532 Copynumber: 1.8 Consensus size: 532
12411617 GCAGGACCAA
* * *
12411627 CAGCAGGATCGATAGCACACAGGGGGGACTGAGCCAATCCCTGGCTTGCGCATTCTACCTCTCTG
1 CAGCAGGATCGATAGCACACAGGGGGGACCGAGCCAATCCCCGGCTTGCGCATTCTACCTCTCCG
* *
12411692 ATCGGTTGAGTGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTC
66 ATCGGCTGAG-GCCCGTACGCTCATTTCATGAGTTGGCTTAGGCATACAAAGTTCATTCCATGTC
** *
12411757 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGATTGCAGCCA-CAGGACA
130 TAAGCATACAAAGCTCATTCCCAGTCTAAGATCAGACCGGACCGAGGATTGCAG-CAGCAGGACA
* * * * *
12411821 AGCAACAGGATCGGCAGCACGTAGGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTACCTCG
194 AGCAACAGAATCGACAGCACGCA-GGAGGGACCGGG-C---CCCCGGCTTGTGCATT-TA-----
12411886 TCGACTGGCCTCACTGACCAGCTGAGCGCCCGCACGCTAATTTCATGGGTTGACTTAGGCATACA
248 -C--CT---CTC-C-GACCAGCTGAGCGCCCGCACGCTAATTTCATGGGTTGACTTAGGCATACA
* * * *
12411951 GAGTTCATCCCCAGTCTAAGCATAC-GAAGTTCATTGCTAGTCTAACTTCAAACTGAACCAAGGG
305 GAGTTCATCCCCAGTCTAAGCATACAG-AGTTCATTCCCAGTCTAACATCAAACCGAACCAAGGG
* ** * *
12412015 TTGCAGTAGCAGGATCGACAGCACATTGGGGGGACCGAG-CAGATCCCCGGCTTATGCATTTTGC
369 TTGCAGCAGCAGGATCGACAGCACACAGGGGGGACCGAGCCA-ATACCCGGCTTATGCATTCTGC
12412079 CTCTCCGACTGGCTCAGCACCCGCACTCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATT
433 CTCTCCGACTGGCTCAGCACCCGCACTCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATT
12412144 CCCAATCTAAGATCAGACCAAAATGAGGGTTGTGG
498 CCCAATCTAAGATCAGACCAAAATGAGGGTTGTGG
** * * * * *
12412179 CAGCAGGATCGATAGCACGTAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTTTGCCTCTCCG
1 CAGCAGGATCGATAGCACACAGGGGGGACCGAGCCAATCCCCGGCTTGCGCATTCTACCTCTCCG
* * **
12412244 GTCGGCTGA-GCACCGTACGCTCGTTT-AGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 ATCGGCTGAGGC-CCGTACGCTCATTTCA-TGAGTTGGCTTAGGCATACAAAGTTCATTCCATGT
* * * * *
12412307 CTAAGCATACAAAGCTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGGAGCAGCAGGACC
129 CTAAGCATACAAAGCTCATTCCCAGTCTAAGATCAGACCGGACCGAGGATTGCAGCAGCAGGACA
* ** *
12412372 AGGAGTAGAATCGACAGCATGCAGGAGGGACCGGGCCCCCGGCTTGTGCATTTACCTCTCCGACC
194 AGCAACAGAATCGACAGCACGCAGGAGGGACCGGGCCCCCGGCTTGTGCATTTACCTCTCCGACC
* * * * **
12412437 TGTTGAGCGCCCGCGCGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAA
259 AGCTGAGCGCCCGCACGCTAATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
* *** *
12412502 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGAATTGAGGGTTTCAGCAGCAGGATCGACA
324 GCATACAGAGTTCATTCCCAGTCTAACATCAAACCGAACCAAGGGTTGCAGCAGCAGGATCGACA
* * * *
12412567 GCACGCAGGGGGGACCGGGCCAATACTCGGCTTGTGCATTCTGCCTCT
389 GCACACAGGGGGGACCGAGCCAATACCCGGCTTATGCATTCTGCCTCT
12412615 TCGGTCGGCT
Statistics
Matches: 374, Mismatches: 57, Indels: 30
0.81 0.12 0.07
Matches are distributed among these distances:
532 153 0.41
533 4 0.01
534 3 0.01
537 2 0.01
539 1 0.00
545 2 0.01
546 16 0.04
549 1 0.00
550 15 0.04
551 115 0.31
552 62 0.17
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (532 bp):
CAGCAGGATCGATAGCACACAGGGGGGACCGAGCCAATCCCCGGCTTGCGCATTCTACCTCTCCG
ATCGGCTGAGGCCCGTACGCTCATTTCATGAGTTGGCTTAGGCATACAAAGTTCATTCCATGTCT
AAGCATACAAAGCTCATTCCCAGTCTAAGATCAGACCGGACCGAGGATTGCAGCAGCAGGACAAG
CAACAGAATCGACAGCACGCAGGAGGGACCGGGCCCCCGGCTTGTGCATTTACCTCTCCGACCAG
CTGAGCGCCCGCACGCTAATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
ATACAGAGTTCATTCCCAGTCTAACATCAAACCGAACCAAGGGTTGCAGCAGCAGGATCGACAGC
ACACAGGGGGGACCGAGCCAATACCCGGCTTATGCATTCTGCCTCTCCGACTGGCTCAGCACCCG
CACTCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAAAA
TGAGGGTTGTGG
Found at i:12412861 original size:158 final size:157
Alignment explanation
Indices: 12412502--12413005 Score: 511
Period size: 158 Copynumber: 3.2 Consensus size: 157
12412492 CCCAGTCTAA
* * * * * * *
12412502 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGAATTGAGGGTTTCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTGT-GGCAGTAGGATCGACA
* * *
12412567 GCACGCAGGGGGGACCGGGCCAAT-ACTCGGCTTGTGCATTCTGCCTCTTCGGTCGGCTGAGCGC
65 GCACGCAGGGGGGACCGGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGC
*
12412631 CCGCATGCCCGTTTCATGGGTTGGCTTAG
129 CCGCATGCTCGTTTCATGGGTTGGCTTAG
** ** * *
12412660 GCATGGGGAGTTCA-TCCCATGTCTAAGCCCCAG-CCAGG-CCGAGGGTCGTGGCAGTGGGA-CT
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACC-GGATCGAGGGT-GTGGCAGTAGGATC-
* * * * *
12412721 G-CAGCACACAGAGGGGGACCGGGTCGATCCCTGGCTTACGCATTATGCCTCTTCGGTCGGCTCA
61 GACAGCACGCAG-GGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGA
** * * *
12412785 ATGCCCGAATGCTCGTTTCATGGGTTGACTGAG
125 GCGCCCGCATGCTCGTTTCATGGGTTGGCTTAG
* *
12412818 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGATCGAGGGTTGTGGCAGTAGGATCGAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGG-TGTGGCAGTAGGATCGACA
* * * * * * *
12412883 GCACGCCGGAGGGATCGGGCCGGTCCCTGGCTTGCGCATTCTACCT-TTCTGG-CTTGCTGAGCA
65 GCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTC-GGTC-GGCTGAGCG
* *
12412946 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CCCGCATGCTCGTTTCATGGGTTGGCTTAG
12412976 GCATACGGAGTTCATTCCCAGTCTAAGATC
1 GCATACGGAGTTCATTCCCAGTCTAAGATC
12413006 GGATCAGACT
Statistics
Matches: 276, Mismatches: 55, Indels: 30
0.76 0.15 0.08
Matches are distributed among these distances:
157 23 0.08
158 233 0.84
159 20 0.07
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTGTGGCAGTAGGATCGACAG
CACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCC
GCATGCTCGTTTCATGGGTTGGCTTAG
Found at i:12414915 original size:26 final size:26
Alignment explanation
Indices: 12414878--12414930 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12414868 GTTGACTTAG
12414878 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
12414904 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12414930 G
1 G
12414931 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12415407 original size:26 final size:26
Alignment explanation
Indices: 12415377--12415429 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
12415367 GTTGACTTAG
12415377 GCATAC-GAAGTTCATTCC-ATGTCTAA
1 GCATACAG-AGTTCATTCCTA-GTCTAA
12415403 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
12415429 G
1 G
12415430 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:12415544 original size:184 final size:182
Alignment explanation
Indices: 12415219--12415772 Score: 606
Period size: 184 Copynumber: 3.0 Consensus size: 182
12415209 ATTGACTTAG
* * **
12415219 GCATACAGAGTTCATTCCCAGTCTAGGATCAGACCGGACCGAGGGTTGCGGCAACAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGTAGGATCGATA
* * * ** * * * * * * *
12415284 GCACGCAGGGGGGACCAGGTCGGTCCCCAACTTGCGCATTCTGCGTCTCTGGCTGACTGAGTGCT
66 GCACGCAAGGGGGA-CAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGCCTG-TTGAGCGCC
* *
12415349 CGCATGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAA
129 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
* ** * * *
12415403 GCATACAGAGTTCATTCCTAGTCTAAGATCGGACTAGACCGAGGCTTGCGGCAGTAGGATCCACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGTAGGATCGATA
* *
12415468 GCACGCATGGGGGATCAGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGACCTGTTGAGCGCC
66 GCACGCAAGGGGGA-CAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCG-CCTGTTGAGCGCC
* * * *
12415533 CACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATCCCCA-GTCTAA
129 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCTAA
* * * * * * *
12415587 GCATACGGAGTTCTTTCCCAGTGTAAGATCGAACCGGACTGAGGGTTGCGGTAGTAGGATCGGTA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGTAGGATCGATA
* * * *
12415652 GCACCCAAGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGTTGAGCGCC
66 GCACGCAAGGGGGACAG-GCCGATCCCCGGCTTACGCATTCTGCCTCTCC-GCCTGTTGAGCGCC
* * * * * * *
12415717 CGCACGCCCATTTCTTGGATTGGCTTAGGCATAGGGACTTCATTCCATGTCTAA
129 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
12415771 GC
1 GC
12415773 CCCAGCCAGA
Statistics
Matches: 306, Mismatches: 59, Indels: 10
0.82 0.16 0.03
Matches are distributed among these distances:
183 5 0.02
184 294 0.96
185 7 0.02
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (182 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGTAGGATCGATA
GCACGCAAGGGGGACAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGCCTGTTGAGCGCCCG
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:12417589 original size:158 final size:156
Alignment explanation
Indices: 12417108--12417610 Score: 463
Period size: 159 Copynumber: 3.2 Consensus size: 156
12417098 CCCAGTCTAA
* * * *
12417108 GCATACGGAGTTCATTCCCAGTCCATGATCGAAACGGACTGAGGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAAACGGACCGAGGGTTGCGGCAGCAGGATCGACA
* ** *
12417173 GCACGCAGGGGGGATCGGGCCGATCCTCGACTTGTGCATTATGCCTCTCCGGTCGGCTGAGTGCC
66 GCACGCAGGGGGGACCGGGCCGATCCTCG-CTTGTGCATTATGCCTCTCCGACCGGCTGAGAGCC
* * *
12417238 CGCACGCCCGTTTCATGGGTTTGGCTTAG
130 CGAACGCTCGTTTCGT-GGTTT-GCTTAG
* ** * ** * * * ** * *
12417267 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCGAACCGAGGGTTGTGGTAGTGGGACCGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAAACGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * *
12417331 AGCACGCAGAGGGGGACCGGGCCGAT-CTCCGGCTTGCGCATTATGCCTCTTCGACCGGCTCA-A
65 AGCACGCAG-GGGGGACCGGGCCGATCCT-C-GCTTGTGCATTATGCCTCTCCGACCGGCTGAGA
* * *
12417394 CGCCTGAACGCTCATTTCGTGGGTTGACTTAG
127 -GCCCGAACGCTCGTTTCGTGGTTTG-CTTAG
* * * *
12417426 GCATACGAAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAAACGGACCGAGGGTTGCGGCAGCAGGATCGACA
** ** * * * *
12417491 GCACGCAGGGCAGACCAAGCCGGTCCTCAGCTTGTGCATTCTGTCTCTCCGACCGACTGAGAGCC
66 GCACGCAGGGGGGACCGGGCCGATCCTC-GCTTGTGCATTATGCCTCTCCGACCGGCTGAGAGCC
*
12417556 CGTACGCTCGTTTCGTGAGTTTGCTTAG
130 CGAACGCTCGTTTCGTG-GTTTGCTTAG
* * * *
12417584 GCATACAGAGTTCTTTCACTGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
12417611 CATACAGAGT
Statistics
Matches: 266, Mismatches: 68, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
158 84 0.32
159 123 0.46
160 58 0.22
161 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAAACGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCTCGCTTGTGCATTATGCCTCTCCGACCGGCTGAGAGCCC
GAACGCTCGTTTCGTGGTTTGCTTAG
Found at i:12417633 original size:26 final size:26
Alignment explanation
Indices: 12417584--12417635 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12417574 GTTTGCTTAG
* *
12417584 GCATACAGAGTTCTTTCACTGTCTAA
1 GCATACAGAGTTCGTTCACAGTCTAA
*
12417610 GCATACAGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCGTTCACAGTCTAA
12417636 AATCGGACCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCGTTCACAGTCTAA
Found at i:12418600 original size:26 final size:26
Alignment explanation
Indices: 12418570--12418622 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12418560 GTTGACTTAG
*
12418570 GCATATAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
12418596 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12418622 G
1 G
12418623 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12419602 original size:26 final size:26
Alignment explanation
Indices: 12419568--12419640 Score: 128
Period size: 26 Copynumber: 2.8 Consensus size: 26
12419558 TGGGTTGGCT
*
12419568 TAAGTATACGGAGTTCATTCCATGTC
1 TAAGCATACGGAGTTCATTCCATGTC
12419594 TAAGCATACGGAGTTCATTCCATGTC
1 TAAGCATACGGAGTTCATTCCATGTC
*
12419620 TAAGCATACGAAGTTCATTCC
1 TAAGCATACGGAGTTCATTCC
12419641 CAGTCAAAGA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCATGTC
Found at i:12420202 original size:26 final size:26
Alignment explanation
Indices: 12420173--12420225 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12420163 GTTGACTTAG
12420173 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
12420199 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12420225 G
1 G
12420226 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12420609 original size:21 final size:21
Alignment explanation
Indices: 12420585--12420639 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
12420575 TCGATAGCAC
*
12420585 GTAGCTGGACTGAGAGTTGTG
1 GTAGCTGGACCGAGAGTTGTG
*
12420606 GTAGCTGGACCGAGGGTTGTG
1 GTAGCTGGACCGAGAGTTGTG
12420627 GTAGCTGGACCGA
1 GTAGCTGGACCGA
12420640 TAGTGGGATC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.18, C:0.15, G:0.44, T:0.24
Consensus pattern (21 bp):
GTAGCTGGACCGAGAGTTGTG
Found at i:12421217 original size:11 final size:11
Alignment explanation
Indices: 12421200--12421254 Score: 74
Period size: 11 Copynumber: 5.0 Consensus size: 11
12421190 CTCAGGGCAC
12421200 CATCGTCGGAG
1 CATCGTCGGAG
*
12421211 TATCGTCGGAG
1 CATCGTCGGAG
12421222 CATCGTCGGAG
1 CATCGTCGGAG
* *
12421233 TATCGCCGGAG
1 CATCGTCGGAG
*
12421244 CATCATCGGAG
1 CATCGTCGGAG
12421255 AGCCTAATTG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 37 1.00
ACGTcount: A:0.20, C:0.25, G:0.35, T:0.20
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:12421228 original size:22 final size:22
Alignment explanation
Indices: 12421200--12421254 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
12421190 CTCAGGGCAC
*
12421200 CATCGTCGGAGTATCGTCGGAG
1 CATCGTCGGAGTATCGCCGGAG
12421222 CATCGTCGGAGTATCGCCGGAG
1 CATCGTCGGAGTATCGCCGGAG
*
12421244 CATCATCGGAG
1 CATCGTCGGAG
12421255 AGCCTAATTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.20, C:0.25, G:0.35, T:0.20
Consensus pattern (22 bp):
CATCGTCGGAGTATCGCCGGAG
Found at i:12422220 original size:159 final size:158
Alignment explanation
Indices: 12421859--12422361 Score: 442
Period size: 159 Copynumber: 3.2 Consensus size: 158
12421849 TTCAGTCTAA
* * * *
12421859 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGAGTTGCGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGATA
* * *
12421924 GCACACAGGGGGGATCGGGTCGATCCCCAGCTTACGCAATCTGCCTCTCCGGTCGGCTGAGCGCC
66 GCACACAGGGGGGACCGGGTCGATCCCCAGCTTACGCAATATGCCTCTCCGGTCGGCTCAGCGCC
*
12421989 CGCACGCCCGTTTCGTGGCTTGGCTTAG
131 CGCACGCCCGTTTCGTGGCTTGACTTAG
* * * * *
12422017 GCATA-GGTAGTTCATT-CCATGTCTAAG-CCCGAGCTAGACCGAGGGTTGTGGCAGCGGGACCA
1 GCATACGG-AGTTCATTCCCA-GTCTAAGATCAGA-CCAGACCGAGGGTTGCGGCAGCAGGACC-
* * * * * *
12422079 GGTAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTC-CTGG-CTGGCTC
62 GATAGCACACAG-GGGGGACCGGGTCGATCCCCAGCTTACGCAATATGCCTCTCCGGTC-GGCTC
* *
12422142 AGCGCCCGCACGCTCGTTTCGTTGCTTGACTTAG
125 AGCGCCCGCACGCCCGTTTCGTGGCTTGACTTAG
* * * * * * * * *
12422176 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACTGAGGGTCGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGATA
** * * * * * * * * * ** *
12422241 GCACGTATTGGGGGATCAGGCCGGTCCCTAACTTACGCATTCTGCCTCTCCGACCGGCTGAGCGC
66 GCACACA-GGGGGGACCGGGTCGATCCCCAGCTTACGCAATATGCCTCTCCGGTCGGCTCAGCGC
* * * * *
12422306 CCGTACGCTCGATTCGTGGGTTGGCTTAG
130 CCGCACGCCCGTTTCGTGGCTTGACTTAG
*
12422335 GCATACAGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
12422362 CATATGGAGT
Statistics
Matches: 276, Mismatches: 56, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
157 7 0.03
158 84 0.30
159 143 0.52
160 42 0.15
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGATA
GCACACAGGGGGGACCGGGTCGATCCCCAGCTTACGCAATATGCCTCTCCGGTCGGCTCAGCGCC
CGCACGCCCGTTTCGTGGCTTGACTTAG
Found at i:12422512 original size:184 final size:184
Alignment explanation
Indices: 12422176--12422925 Score: 738
Period size: 184 Copynumber: 4.0 Consensus size: 184
12422166 CTTGACTTAG
* * * *
12422176 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGA-CTGAGGGTCGCGACAGTAGGATCGAC
1 GCATACGGAGTTCATTCTCAGTCTAAGATCAGATCGGATC-GAGGGTTGCGACAGCAGGATCGAC
* * * * * * * * *
12422240 AGCACGTATTGGGGGATCAGGCCGGTCCCTAACTTACGCATTCTGCCTCTCCGACCGGCTGAGCG
65 AGCACGTA-GGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCA
* * * * *
12422305 CCCGTACGCTCGATTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
129 CCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * *
12422361 GCATATGGAGTTCATTCTCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCTCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGATCGACA
* * * * * * *
12422426 GCACGCAGGGGGGACCGGGTCGGTCCCCAGTTTAG-GCATTCTACCTCTCCGGCTGGCTGAGCGC
66 GCACGTAGGGGGGACCGGGCCGATCCCCAGCTT-GCGCATTCTACCTCTCCGACCGGCTGAGCAC
* * * *
12422490 CTGCATGCTCGTTTTATGGGTTGGCTTAGGCATACGAAGTTTATTCCATGTCTAA
130 CCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * * *
12422545 GCCTATGGAGTTCATTCTCATTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGACTAGCA
1 GCATACGGAGTTCATTCTCAGTCTAAGATCAGATCGGATCGAGGG-T----T-GC--GAC-AGC-
* **
12422610 GTAGGATCGACAGCACGTAGGGGGGATCGGGGTGATCCCC-GACTTGCGCATTCTACCTCTCCGA
56 --AGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCAG-CTTGCGCATTCTACCTCTCCGA
* * * *
12422674 CCGACTGAGCACCCGCAAGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCTCCA-GTC
118 CCGGCTGAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTC
12422738 TAA
182 TAA
* * * * *
12422741 GCATACAGAGTTCATTC-CAATTCTAAGATCAGA-CCGATCGAGGGTTACGACAGCAGGATCGAT
1 GCATACGGAGTTCATTCTC-AGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGATCGAC
* * * * * * * * *
12422804 AGCACATAGGGGAGTCTGGGCCGATCCTCGGCTTGCACATTCTACCTCTCCGGCCGGTTGAGCAC
65 AGCACGTAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCAC
* *
12422869 CCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
130 CCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
12422924 GC
1 GC
12422926 CCCAGCTGGA
Statistics
Matches: 467, Mismatches: 78, Indels: 42
0.80 0.13 0.07
Matches are distributed among these distances:
182 4 0.01
183 106 0.23
184 132 0.28
185 62 0.13
186 4 0.01
187 3 0.01
189 2 0.00
190 2 0.00
192 2 0.00
193 3 0.01
194 1 0.00
195 12 0.03
196 130 0.28
197 4 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (184 bp):
GCATACGGAGTTCATTCTCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGATCGACA
GCACGTAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCACC
CGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:12422754 original size:196 final size:183
Alignment explanation
Indices: 12422176--12422925 Score: 634
Period size: 196 Copynumber: 4.0 Consensus size: 183
12422166 CTTGACTTAG
* * * * * * ** *
12422176 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACTGAGGGTCGCGACAGTAGGATCGACA
1 GCATACAGAGTTCATTCCAATTCTAAGATCAGA-CCGACCGAGGGTTACGACAGCAGGATCGACA
* * * ** * * *
12422241 GCACGTATTGGGG-GATC-AGGCCGGTCCCTAACTTACGCATTCTGCCTCTCCGACCGGCTGAGC
65 GCAC--ATAGGGGAG-TCTGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGGCCGGCTGAGC
* * * * * *
12422304 GCCCGTACGCTCGATTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
127 ACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
** * * * ** * *
12422361 GCATATGGAGTTCATTCTC-AGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCAGGATCGAT
1 GCATACAGAGTTCATTC-CAATTCTAAGATCAGA-CCGACCGAGGGTTACGACAGCAGGATCGAC
** * * * * * * *
12422425 AGCACGCAGGGGGGACCGGGTCGGTCCCC-AGTTTAG-GCATTCTACCTCTCCGGCTGGCTGAGC
64 AGCACATAGGGGAGTCTGGGCCGATCCCCGA-CTT-GCGCATTCTACCTCTCCGGCCGGCTGAGC
* * * * *
12422488 GCCTGCATGCTCGTTTTATGGGTTGGCTTAGGCATACGAAGTTTATTCCATGTCTAA
127 ACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* **
12422545 GCCTATGGAGTTCATTCTC-ATTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGACTAGC
1 GCATACAGAGTTCATTC-CAATTCTAAGATCAGACC-GACCGAGGG-T----TA-C--GAC-AGC
* * **
12422609 AGTAGGATCGACAGCACGTAGGGGGGATC-GGGGTGATCCCCGACTTGCGCATTCTACCTCTCCG
55 ---AGGATCGACAGCACATAGGGGAG-TCTGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCG
* * * * *
12422673 ACCGACTGAGCACCCGCAAGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCTCCA-GT
116 GCCGGCTGAGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGT
12422737 CTAA
180 CTAA
* *
12422741 GCATACAGAGTTCATTCCAATTCTAAGATCAGACCGATCGAGGGTTACGACAGCAGGATCGATAG
1 GCATACAGAGTTCATTCCAATTCTAAGATCAGACCGACCGAGGGTTACGACAGCAGGATCGACAG
* * * *
12422806 CACATAGGGGAGTCTGGGCCGATCCTCGGCTTGCACATTCTACCTCTCCGGCCGGTTGAGCACCC
66 CACATAGGGGAGTCTGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGGCCGGCTGAGCACCC
* *
12422871 GCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
131 GCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
12422924 GC
1 GC
12422926 CCCAGCTGGA
Statistics
Matches: 465, Mismatches: 75, Indels: 52
0.79 0.13 0.09
Matches are distributed among these distances:
182 6 0.01
183 114 0.25
184 123 0.26
185 59 0.13
186 4 0.01
187 3 0.01
189 2 0.00
190 2 0.00
192 2 0.00
193 3 0.01
194 1 0.00
195 10 0.02
196 130 0.28
197 6 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (183 bp):
GCATACAGAGTTCATTCCAATTCTAAGATCAGACCGACCGAGGGTTACGACAGCAGGATCGACAG
CACATAGGGGAGTCTGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGGCCGGCTGAGCACCC
GCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:12423095 original size:26 final size:26
Alignment explanation
Indices: 12423059--12423109 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12423049 TAGCTTAGGT
12423059 ATACGAAGTTCATT-CCATGTCTAAGC
1 ATACGAAGTTCATTCCCA-GTCTAAGC
12423085 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
12423110 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:12424293 original size:26 final size:26
Alignment explanation
Indices: 12424263--12424315 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12424253 GTTGGCTTAG
12424263 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
12424289 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12424315 G
1 G
12424316 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12425377 original size:26 final size:26
Alignment explanation
Indices: 12425341--12425393 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12425331 GTTGACTTAG
*
12425341 GCATATGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
12425367 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12425393 G
1 G
12425394 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12426024 original size:185 final size:184
Alignment explanation
Indices: 12425683--12426049 Score: 502
Period size: 185 Copynumber: 2.0 Consensus size: 184
12425673 GTTGACTTAG
* * *
12425683 GCATACGGGGTTTATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCAGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCAGTAGCAGGATCGACA
* * * ** * * *
12425748 GCATGCATGGGGGATCGAGCCGGTCCCCGGCTTGTGCATTCTGCCTTTTCGACCGGTTGAGCACC
66 GCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGATTGAGCACC
* *
12425813 CGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
* * **
12425867 GCATACGGAGTTCATTCCCAGTCTAGGATCAGA-CTAGACCGAGGGTTGCAGTAGCAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-AGACCAAGGGTTGCAGTAGCAGGATCGAC
* * * *
12425931 AGCACGCAGGGGGGGATCGGGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGATCGATTGAGCG
65 AGCACGCA-GGGGGGATCGAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGATTGAGCA
* *
12425996 CCCGTACGCTGGTTTCATGGGTTGGCTTAGGCATATGAAGTTCATTCCATGTCT
129 CCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
12426050 CAGCCCCAAC
Statistics
Matches: 158, Mismatches: 23, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
183 1 0.01
184 62 0.39
185 95 0.60
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCAGTAGCAGGATCGACA
GCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGATTGAGCACC
CGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
Found at i:12426232 original size:26 final size:26
Alignment explanation
Indices: 12426196--12426247 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12426186 GTTGACTTAG
12426196 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
12426222 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
12426248 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:12426584 original size:159 final size:156
Alignment explanation
Indices: 12426222--12426721 Score: 440
Period size: 159 Copynumber: 3.2 Consensus size: 156
12426212 CCCAATCTAA
* * *
12426222 GCATACGGAGTTCATTCCCAGTCTAAATCAGACCGGATTGAGGGTT-ACGTAGCAGGATCGACAG
1 GCATACGGAGTTCATT-CCAGTCTAAATCAGACCGGACTAAGGGTTGACGCAGCAGGATCGACAG
* *
12426286 CACGCAGGGGGGACCGAGTCGATCCCTGGCTTGCGCATTCTGCCTTTCTGGCCGGCTGAGCGCCC
65 CACGCAGGGGGGACCGAGTCGATCCCTGGCTTGCGCATTATGCCTTTCTGGCCGGCTCAGCGCCC
*
12426351 GCACGCCCATTTCGTGGGTTGGCTTAG
130 GCACGCCCATTTCGTGGGTTGACTTAG
* * * * * ** *
12426378 GGATAGGGAGTTCATTCCATGTCTAAACCCCA-ACCGGACCAATGGTTGTGGCAGCGGGATCGAC
1 GCATACGGAGTTCATTCCA-GTCTAAA--TCAGACCGGACTAAGGGTTGACGCAGCAGGATCGAC
*
12426442 AGCACGCAGAGGGGGACCGAG-CTGAT-CCTCGGCTTGCGCATTATGCCTCTTC-GGTCGGCTCA
63 AGCACGCAG-GGGGGACCGAGTC-GATCCCT-GGCTTGCGCATTATGCCT-TTCTGGCCGGCTCA
* * * *
12426504 GTGCCCGCACGCTCATTTTGTGGGTTGACTTAT
124 GCGCCCGCACGCCCATTTCGTGGGTTGACTTAG
* * * * * *
12426537 GCATATGGAGTTCATTCCTAGTATAAGATCAGACTGGACTAAGGGTTG-CAACAGCAAGATGGAC
1 GCATACGGAGTTCATTCC-AGTCTAA-ATCAGACCGGACTAAGGGTTGAC-GCAGCAGGATCGAC
* * * * * * * ** * *
12426601 AGCACCCTGGGGGGGATCTG-GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCAGGCTGAGC
63 AGCACGC-AGGGGGGA-CCGAGTCGATCCCTGGCTTGCGCATTATGCCTTTCTGGCCGGCTCAGC
* * * * *
12426665 ACCAGCACGCTCGTTTCGTGGGTTG-GTATAG
126 GCCCGCACGCCCATTTCGTGGGTTGACT-TAG
12426696 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
12426722 GCATGCGGAG
Statistics
Matches: 275, Mismatches: 50, Indels: 35
0.76 0.14 0.10
Matches are distributed among these distances:
155 3 0.01
156 21 0.08
157 11 0.04
158 33 0.12
159 196 0.71
160 11 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAATCAGACCGGACTAAGGGTTGACGCAGCAGGATCGACAGC
ACGCAGGGGGGACCGAGTCGATCCCTGGCTTGCGCATTATGCCTTTCTGGCCGGCTCAGCGCCCG
CACGCCCATTTCGTGGGTTGACTTAG
Found at i:12426732 original size:26 final size:26
Alignment explanation
Indices: 12426696--12426748 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12426686 GTTGGTATAG
12426696 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12426722 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12426748 G
1 G
12426749 ATTTTCAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12427449 original size:26 final size:26
Alignment explanation
Indices: 12427420--12427471 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12427410 GTTGACTTAG
12427420 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
12427446 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12427472 AATTAGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12427747 original size:159 final size:159
Alignment explanation
Indices: 12427533--12427828 Score: 389
Period size: 159 Copynumber: 1.9 Consensus size: 159
12427523 GACCCGGTCG
* * * * *
12427533 ATCCCTGGCTTGTGCATTCTACCTCCCCGATCGGCTGAGCGCCCACACGTCCATTTCATGGGTTG
1 ATCCCCGGCTTGTGCATTATACCTCCCCGACCGGCTCAGCGCACACACGTCCATTTCATGGGTTG
** * * *
12427598 GTTTGGGCACAAGGAGTTCATTCCATGTCTAA-ACCCCAGCCAGACCGAGGGTTGTGGCAGCGGG
66 ACTTAGGCACAAGAAGTTCATTCCATGTCTAAGA-CCCAGCCAGACCGAGGGTTGTGGCAGCAGG
12427662 ACTGGCAGCACACAGACGGGGACCGGGCCT
130 ACTGGCAGCACACAGACGGGGACCGGGCCT
* * * **
12427692 ATCCCCGGCTTGTGCATTATGCCTCTCCGACCGGCTCAGCGCACTCACG-CTCATTTTGTGGGTT
1 ATCCCCGGCTTGTGCATTATACCTCCCCGACCGGCTCAGCGCACACACGTC-CATTTCATGGGTT
* * * *
12427756 GACTTAGGCATACGAAGTTCATTCCATGTCTAAGACCCAGTCGGACCGAGGGTTGTGGCAGCAGG
65 GACTTAGGCACAAGAAGTTCATTCCATGTCTAAGACCCAGCCAGACCGAGGGTTGTGGCAGCAGG
12427821 ACTGGCAG
130 ACTGGCAG
12427829 TGGGATTGAC
Statistics
Matches: 116, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
158 1 0.01
159 114 0.98
160 1 0.01
ACGTcount: A:0.19, C:0.30, G:0.29, T:0.23
Consensus pattern (159 bp):
ATCCCCGGCTTGTGCATTATACCTCCCCGACCGGCTCAGCGCACACACGTCCATTTCATGGGTTG
ACTTAGGCACAAGAAGTTCATTCCATGTCTAAGACCCAGCCAGACCGAGGGTTGTGGCAGCAGGA
CTGGCAGCACACAGACGGGGACCGGGCCT
Found at i:12427971 original size:26 final size:25
Alignment explanation
Indices: 12427935--12427984 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
12427925 TTGACTTAGA
*
12427935 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCAT-CCCAGTCTAAG
*
12427961 CATACAGAGTTCATTCCAGTCTAA
1 CATACAGAGTTCATCCCAGTCTAA
12427985 AATCAAACCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (25 bp):
CATACAGAGTTCATCCCAGTCTAAG
Found at i:12428335 original size:25 final size:25
Alignment explanation
Indices: 12428301--12428348 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
12428291 GTTGACTTAG
12428301 GCATACGGAGTTCATCCCCAGTCAA
1 GCATACGGAGTTCATCCCCAGTCAA
* *
12428326 GCATATGGAGTTCATTCCCAGTC
1 GCATACGGAGTTCATCCCCAGTC
12428349 TAAGATCGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCCAGTCAA
Found at i:12429223 original size:26 final size:26
Alignment explanation
Indices: 12429193--12429243 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
12429183 GTTGACTTAG
12429193 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
*** *
12429219 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACAAAGTTCATCCCCAGTCTA
12429244 TGATCAGACT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:12430435 original size:26 final size:26
Alignment explanation
Indices: 12430405--12430454 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
12430395 GTTGACTTAG
12430405 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
12430431 GCATATGGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATCCCCAGTCT
12430455 TTGATCAGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12431393 original size:26 final size:26
Alignment explanation
Indices: 12431343--12431395 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12431333 GTTGGCTTAG
*
12431343 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
12431369 GCATCCGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
12431395 G
1 G
12431396 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:12432373 original size:26 final size:26
Alignment explanation
Indices: 12432337--12432389 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12432327 GTTGGCTTAG
12432337 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12432363 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12432389 G
1 G
12432390 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12433474 original size:159 final size:158
Alignment explanation
Indices: 12433093--12433525 Score: 476
Period size: 159 Copynumber: 2.7 Consensus size: 158
12433083 CCCAGTCTAA
** * *
12433093 GCATACGGAGTTCATTCGGAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
12433158 GCACGCAG-GGGGATCGGGTCGATCCCCTGCTTGCGCATTCTGCCTCTCCGACAGGCTGAGCGTC
66 GCACGCAGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACAGGCTCAGCGCC
*
12433222 CGCACGCCCGTTTCGTGGGTTGGCTTAG
131 CGCACGCCCGTTTCGTGGGTTGACTTAG
* * * ** * * * * * *
12433250 GTATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCAGATCGAGGATTGTGGCAACGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGATCGAGGGTTGCGGCAGCAGGATCGA
* *
12433313 CAGCACGCAGAGAGGGACCGAGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGACAGGCTCAGC
64 CAGCACGCAGAG-GGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACAGGCTCAGC
* *
12433378 GCCCGCACGCTCGTTTTGTGGGTTGACTTAG
128 GCCCGCACGCCCGTTTCGTGGGTTGACTTAG
* ** *
12433409 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGCACCAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * *
12433474 GCACACAGAGGGGGACTGGGCTGATCCCTGGCTTGCACATTCTACCTCTCCG
66 GCACGCAGA-GGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCG
12433526 GTCGACTGAG
Statistics
Matches: 219, Mismatches: 50, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
156 3 0.01
157 53 0.24
158 1 0.00
159 156 0.71
160 6 0.03
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.21
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACAGGCTCAGCGCC
CGCACGCCCGTTTCGTGGGTTGACTTAG
Found at i:12433542 original size:159 final size:159
Alignment explanation
Indices: 12433093--12433589 Score: 473
Period size: 159 Copynumber: 3.2 Consensus size: 159
12433083 CCCAGTCTAA
** * *
12433093 GCATACGGAGTTCATTCGGAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
12433158 GCACGC--AGGGGGA-TCGGG-TCGATCCCCT-GCTTGCGCATTCTGCCTCTCCGACAGGCTGAG
66 GCACGCAGAGGGGGACT-GGGCT-GAT-CCCTGGCTTGCGCATTCTGCCTCTCCGACAGGCTGAG
* * *
12433218 CGTCCGCACGCCCGTTTCGTGGGTTGGCTTAG
128 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * ** * * * * * *
12433250 GTATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCAGATCGAGGATTGTGGCAACGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGATCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * * *
12433313 CAGCACGCAGAGAGGGACCGAGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGACAGGCTCAGC
64 CAGCACGCAGAGGGGGACTGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGACAGGCTGAGC
*
12433378 GCCCGCACGCTCGTTTTGTGGGTTGACTTAG
129 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** *
12433409 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGCACCAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
12433474 GCACACAGAGGGGGACTGGGCTGATCCCTGGCTTGCACATTCTACCTCTCCGGTC-GACTGAGCA
66 GCACGCAGAGGGGGACTGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCC-GACAGGCTGAGCG
**
12433538 CCCGCACG--C---TCGTGGGTTGGTTTAG
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
12433563 GCATACAGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
12433590 CCCCAGTTGG
Statistics
Matches: 268, Mismatches: 61, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
153 3 0.01
154 34 0.13
156 3 0.01
157 52 0.19
158 3 0.01
159 166 0.62
160 7 0.03
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.21
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGAGGGGGACTGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGACAGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:12433980 original size:26 final size:26
Alignment explanation
Indices: 12433950--12434002 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12433940 GTTGACATAG
12433950 GCATATGG-TGTTCATCCCCAGTCTAA
1 GCATATGGAT-TTCATCCCCAGTCTAA
*
12433976 GCATATGGATTTCATTCCCAGTCTAA
1 GCATATGGATTTCATCCCCAGTCTAA
12434002 G
1 G
12434003 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGGATTTCATCCCCAGTCTAA
Found at i:12434417 original size:159 final size:157
Alignment explanation
Indices: 12433976--12434474 Score: 443
Period size: 159 Copynumber: 3.1 Consensus size: 157
12433966 CCCAGTCTAA
* * *
12433976 GCATATGGATTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGATA
* * *
12434041 GCACGCAG-GAGGGATCGGGGCCGATCCCCGGCATGCGCATTCTGCCTCTCCGGCCGACTGAGTG
66 GCACGCAGAGAGGGATC-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCT-CAGCCGGCTGA--G
* *
12434105 CCCGTACAC-C-CGTTTCTTGGGTTGGCTTAG
127 CCC-CACACGCTCGTTTCATGGGTTGGCTTAG
* * ** * * **
12434135 GCACAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACTGGACCGAGGGTTATGGTAGCAGGATCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTACGACAGCAGGATCGA
* * ** * * ** * * * *
12434198 CAGCACGTAGAGAGGGATCGAACCGATCCTCGACTTATGTATTCTGCCTTTCCGACCGGCTTAGC
64 TAGCACGCAGAGAGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCAG-CCGGCTGAGC
* *
12434263 ACCCACACGCTCATTTCATGGGTTGACTTAG
128 -CCCACACGCTCGTTTCATGGGTTGGCTTAG
* * *
12434294 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTACGACAGCAGGATCCATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGATA
* * * * *
12434359 GCACCCAGAGGGGGAACGGG-CTAGTCCCCGGCTTGCGCATTCTGCCTCTCTAGTCGGCTGAGTG
66 GCACGCAGAGAGGGATCGGGCCGA-TCCCCGGCTTGCGCATTCTGCCTCTC-AGCCGGCTGA--G
* **
12434423 CCCGCACGCACGCTTGTTTTGTGGGTTGGCTTAG
127 CCC-CA--CACGCTCGTTTCATGGGTTGGCTTAG
12434457 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
12434475 ATTTCTAAGC
Statistics
Matches: 263, Mismatches: 61, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
157 6 0.02
158 11 0.04
159 187 0.71
160 16 0.06
161 4 0.02
163 39 0.15
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGATA
GCACGCAGAGAGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCAGCCGGCTGAGCCCC
ACACGCTCGTTTCATGGGTTGGCTTAG
Found at i:12434507 original size:26 final size:26
Alignment explanation
Indices: 12434457--12434509 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12434447 GTTGGCTTAG
* *
12434457 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACGGAGTTAATTCCATGTCTAA
12434483 GCATACGGAGTTAATTCCCA-GTCTAA
1 GCATACGGAGTTAATT-CCATGTCTAA
12434509 G
1 G
12434510 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCATGTCTAA
Found at i:12434844 original size:26 final size:26
Alignment explanation
Indices: 12434815--12434867 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12434805 GTTGACTTAT
12434815 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
12434841 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12434867 G
1 G
12434868 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12436089 original size:26 final size:26
Alignment explanation
Indices: 12436039--12436091 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12436029 GTTGGCTTAG
*
12436039 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
12436065 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
12436091 G
1 G
12436092 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:12436629 original size:721 final size:722
Alignment explanation
Indices: 12435244--12436814 Score: 2465
Period size: 721 Copynumber: 2.2 Consensus size: 722
12435234 GGGACCGAGC
* * * * **
12435244 CAATCCCCGACTTGTGCATTCTGCCTCTCCGGTTGGCTGAGTACCCGCACGCTCGTTTCGTGGGT
1 CAATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * *
12435309 TGGCTTAGGCATACGGAGTTCAATCCATGTCCAAGCATACGGAGTTCATTACCAGTCTAAGATTT
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTT
* *
12435374 TGAGCCACGGTGCACATGCTGGTCTCGGGCATGTGTTGGTGCCACATTTTTTTCGCCCGAGGCAC
131 TGAGCCACGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTCGCCCGAGGCAC
* * * *
12435439 CATCATCGGAGCATCGTCGGAGAGCCTAACCGGCGACATTGGGGGTTCCGACCATTGGGGTGGCT
196 CATCACCGGAGCATCGCCGAAGAGCCTAACCGACGACATTGGGGGTTCCGACCATTGGGGTGGCT
* * * *
12435504 GGGGGGTGTGCACACATGATGTGAGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCC
261 CGGGGGTGTGCACACATGATGAGAGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
12435569 CTCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTCAGATTTTATAGGTTTGCTGCCA
326 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTATAGGTTTGCTGCCA
* * *
12435634 GTAGCCATTAAAGTGTTTGAAATGGGAAACTTTTTTCAAATGGTCATAAAATCTTCTCCACTTCG
391 GTAGCCATTAAAGTGTCTGAAATGGGAAACTTTTTTCAAAAGGTCACAAAATCTTCTCCACTTCG
*
12435699 AGTTTTTAACTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTACAAAATTTGG
456 AGTTTTTAACTGAAGTGTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTACAAAATTTGG
* * *
12435764 GGACAAAACTCTTTCTAAAAAAGTTTTAAAAAATCCCGCACCGTAAAAAGTTTCTAAAATCATGA
521 GGACAAAACTCTTTCTAAAAAAGTTTTAAAAAATCCCGAACCGCAAAAAGTTTCCAAAATCATGA
*
12435829 AAAATAAAAAACGGGTCGTCTTGGCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAA
586 AAAATAAAAAACGGGTCATCTTGGCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAA
* * *
12435894 TTTACAAGCCACAAAAATGGCATTGGCATGACAGAAATATGAAGATGTGCTTGAACCCACCTACG
651 TTTACAAGCCACAAAAATGGCATTGGCATGACAAAAATATAAAGATGTGCTTGAACCCACCTACC
12435959 ACCCAAT
716 ACCCAAT
* ** * *
12435966 CGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGT
1 CAATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
12436031 TGGCTTAGGCATACGGAGTTCATTCCATTTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTT
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTT
* * *
12436096 TGAGCCATGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTCGCCCGGGGCAC
131 TGAGCCACGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTCGCCCGAGGCAC
* * *
12436161 CATCGCCGGAGCATCGCCGAAGAGCCTAACCGACGACATTGGGGGTTCTGACGATTGTGGG-GGC
196 CATCACCGGAGCATCGCCGAAGAGCCTAACCGACGACATTGGGGGTTCCGACCATTG-GGGTGGC
*
12436225 -CGGGGGTGTG-AGCACATGATGAGTGATGGGTGCGGGTACTTGGCCCTTATATT-GCCCCCTAT
260 TCGGGGGTGTGCA-CACATGATGAGAGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
12436287 CGCTCATCAAACCTTCGA-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
324 CCCTCATCAAACCTT-GAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTATAGGTTTGCTG
*
12436351 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTCTCCAC
388 CCAGTAGCCATTAAAGTGTCTGAAAT-GGGAAACTTTTTTCAAAAGGTCACAAAATCTTCTCCAC
* *
12436416 TTCGAGTTTTTAGCTGAAGTGTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTACCAAAT
452 TTCGAGTTTTTAACTGAAGTGTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTACAAAAT
* *
12436481 TTGGGGGCAAAACTCTTTCT-AAAAAGATTTTAAAAAATCTCGAACCGCAAAAAGTTTCCAAAAT
517 TTGGGGACAAAACTCTTTCTAAAAAAG-TTTTAAAAAATCCCGAACCGCAAAAAGTTTCCAAAAT
* *
12436545 CATGAAAAATAGAAAACGGGTCATCTTGGCACGAAACTTCACATGAATGCTTAGGGGACCATTGT
581 CATGAAAAATAAAAAACGGGTCATCTTGGCACGAAACTTCACATGAAGGCTTAGGGGACCATTGT
*
12436610 ATGAATTTACAAGCCACAAAAATGGCATTGGCATGGCAAAAATATAAAGATGTGCTTGAACCCAC
646 ATGAATTTACAAGCCACAAAAATGGCATTGGCATGACAAAAATATAAAGATGTGCTTGAACCCAC
**
12436675 CTACCACCCGTT
711 CTACCACCCAAT
* * *
12436687 CAATCCCTGGCTTGCGCATCCTGCCTC-TCTGGTCGGCTAAGCGCCCGCACGCTCGTTTCGTGGG
1 CAATCCCCGGCTTGCGCATTCTGCCTCTTC-GGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
** *
12436751 TTAACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
65 TTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
12436815 CAGACCGGCC
Statistics
Matches: 774, Mismatches: 68, Indels: 15
0.90 0.08 0.02
Matches are distributed among these distances:
720 101 0.13
721 439 0.57
722 231 0.30
723 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (722 bp):
CAATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTT
TGAGCCACGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTCGCCCGAGGCAC
CATCACCGGAGCATCGCCGAAGAGCCTAACCGACGACATTGGGGGTTCCGACCATTGGGGTGGCT
CGGGGGTGTGCACACATGATGAGAGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTATAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGAAACTTTTTTCAAAAGGTCACAAAATCTTCTCCACTTCG
AGTTTTTAACTGAAGTGTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTACAAAATTTGG
GGACAAAACTCTTTCTAAAAAAGTTTTAAAAAATCCCGAACCGCAAAAAGTTTCCAAAATCATGA
AAAATAAAAAACGGGTCATCTTGGCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAA
TTTACAAGCCACAAAAATGGCATTGGCATGACAAAAATATAAAGATGTGCTTGAACCCACCTACC
ACCCAAT
Found at i:12436796 original size:26 final size:26
Alignment explanation
Indices: 12436760--12436812 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12436750 GTTAACTTAG
12436760 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12436786 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12436812 G
1 G
12436813 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12437185 original size:157 final size:159
Alignment explanation
Indices: 12436835--12437187 Score: 334
Period size: 157 Copynumber: 2.2 Consensus size: 159
12436825 CATTTCGTTT
* * * ** * * **
12436835 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGTGTTGTGGCAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAACCGGACCGAGGGTTGCAGCAGC
* * * * *
12436900 GGGACCGACAGCACGCAGAGGGGGACCAGGTCGATCCCTGGCTTGCACATTATGGCTCTTCGATC
66 AGGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCCTGGCTTGCACATTATGCCTATTCGACC
* * *
12436965 GGCTCAGCACCCGCATGCTCGTTTCATGG
131 GGCTCAACACCCGCACGCTCATTTCATGG
* ** * * * *
12436994 ATTGATTTATGCATACAGAGTTCATCCCCA-GTCTAAGATCAAACCGGACCGAGGGTTGCAGCAG
1 GTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGACCAAACCGGACCGAGGGTTGCAGCAG
* ** * * * ** * *
12437058 CATGATTGACAGCAC-TAG-GGGGGATCGGGCCGATCTTTGGCTTGCGCATTCTGCCTATTCGAC
65 CAGGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCCTGGCTTGCACATTATGCCTATTCGAC
* * *
12437121 CGGCTGAACGCCCGCACGCTTATTTCATGG
130 CGGCTCAACACCCGCACGCTCATTTCATGG
*
12437151 GTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
1 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
12437188 CATACAGAGT
Statistics
Matches: 148, Mismatches: 44, Indels: 6
0.75 0.22 0.03
Matches are distributed among these distances:
156 3 0.02
157 85 0.57
158 2 0.01
159 55 0.37
160 3 0.02
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.25
Consensus pattern (159 bp):
GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAACCGGACCGAGGGTTGCAGCAGC
AGGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCCTGGCTTGCACATTATGCCTATTCGACC
GGCTCAACACCCGCACGCTCATTTCATGG
Found at i:12438385 original size:158 final size:156
Alignment explanation
Indices: 12437906--12438407 Score: 422
Period size: 158 Copynumber: 3.2 Consensus size: 156
12437896 CCCAGTCTAA
* * * * * * **
12437906 GCATATGGAGTTCATTGCCAGTCTAAGATCGGACTAGACCGAGGGTTGCAATAGCAGGATCGGTA
1 GCATACGGAGTTCCTTTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGATCGACA
* * * * * * ** ** *
12437971 GCACGTAGGAGGGACCGAGCTGATCCTCGGCTTACGCATTCTGACTCTCCGATCGATTGAGCGCT
66 GCACGTAGGAGGGATCG-GCCGAACCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAATGCC
*
12438036 CGCACGCCTGTTTCGTGGGTTGGCTTAG
130 CGCACG-CTCTTTCGTGGGTTGGCTTAG
* * * * ** * *
12438064 GCATAGGGAGTT-CATTCCATGTCTAAGCTCTAG-CCAGACCGAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCCTTTCCA-GTCTAAGATC-AGACCAGACCGAGGGTTGCGATAGCAGGATCGA
* * * * * * *
12438127 CAGCACGCATA-GAGGGATCGGGCC-AATCCCCGGCTTGCACATTATACCTCTTC-AGCCAGCTC
64 CAGCACG--TAGGAGGGATC-GGCCGAA-CCCCGGCTTGCGCATTCTGCCTCTCCGA-TCGGCTG
* * * *
12438189 AATGCCGGCACGCTCGTTCTGTGGGTTGACTTAT
124 AATGCCCGCACGCTCTTTC-GTGGGTTGGCTTAG
* * *
12438223 GCATACGGAGTTCCTTTACAGTCTAAGATCAGACCAGACCAAGGGTTGCGATAGCAGGATTGACA
1 GCATACGGAGTTCCTTTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGATCGACA
* *
12438288 GCACGTAGGGGGGATCGGCCCGAACCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAATGCC
66 GCACGTAGGAGGGATCGG-CCGAACCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAATGCC
*
12438353 CGTACGCTCATTTCGTGGGTTGGCTTAG
130 CGCACGCTC-TTTCGTGGGTTGGCTTAG
* *
12438381 GCATACAGAGTT-CATTCCATGTCTAAG
1 GCATACGGAGTTCCTTTCCA-GTCTAAG
12438408 CATACGGAGT
Statistics
Matches: 262, Mismatches: 66, Indels: 32
0.73 0.18 0.09
Matches are distributed among these distances:
157 13 0.05
158 134 0.51
159 107 0.41
160 8 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCCTTTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGATCGACA
GCACGTAGGAGGGATCGGCCGAACCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAATGCCC
GCACGCTCTTTCGTGGGTTGGCTTAG
Found at i:12438417 original size:26 final size:26
Alignment explanation
Indices: 12438381--12438440 Score: 111
Period size: 26 Copynumber: 2.3 Consensus size: 26
12438371 GTTGGCTTAG
*
12438381 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
12438407 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
12438433 GCATACGG
1 GCATACGG
12438441 CACACATGCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:12439607 original size:26 final size:26
Alignment explanation
Indices: 12439578--12439630 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12439568 GTTGGCTTAG
*
12439578 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12439604 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12439630 G
1 G
12439631 ATCGAATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12439975 original size:26 final size:26
Alignment explanation
Indices: 12439946--12439997 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12439936 GTCGGCTTAG
* *
12439946 GCATATGGAGTTGATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12439972 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12439998 TATTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12441199 original size:26 final size:26
Alignment explanation
Indices: 12441163--12441215 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12441153 GTTGGCTTAG
12441163 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12441189 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12441215 G
1 G
12441216 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12441576 original size:26 final size:26
Alignment explanation
Indices: 12441547--12441596 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
12441537 AACTTAGGCA
12441547 TACGGAGTTCA-TCCCTAGTCTAAGCG
1 TACGGAGTTCATTCCC-AGTCTAAGCG
12441573 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
12441597 ATCGAATCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:12442075 original size:26 final size:26
Alignment explanation
Indices: 12442046--12442098 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12442036 GTTGGCTCAG
12442046 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCGCA-GTCTAA
*
12442072 GCATACGGAGTTCGTTCGCAGTCTAA
1 GCATACGGAGTTCATTCGCAGTCTAA
12442098 G
1 G
12442099 ATCTGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCGCAGTCTAA
Found at i:12442285 original size:26 final size:26
Alignment explanation
Indices: 12442255--12442307 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12442245 GTTGACTTAG
12442255 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12442281 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12442307 G
1 G
12442308 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12442582 original size:159 final size:158
Alignment explanation
Indices: 12442281--12442621 Score: 409
Period size: 159 Copynumber: 2.2 Consensus size: 158
12442271 CCCAGTCTAA
* * *
12442281 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTACGGTAGCAGGTCCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGACCAGACCGGATCGAGGGTTACGGCAGCAGGACCGACA
* *
12442346 GCACGCAAGGGGGACCAGGCTGATCCTTGGCTTGCGCATTCTGCCTCTCTGGCCCACTGAGCGCC
66 GCACGCAAGGGGGACCAGGCTGATCCTCGGCTTGCGCATTCTACCTCTCTGGCCCACTGAGCGCC
**
12442411 CGCACACCCGTTTTGTGGGTTGGCTTAG
131 CGCACACCCGTTTCATGGGTTGGCTTAG
* * * ** *
12442439 GCATAGGGAGTTCATTCC-ATGTCTAAGCCCCAG-TCGGATCGAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCTA-GTCTAAG-ACCAGACCGGATCGAGGGTTACGGCAGCAGGACCGA
* * * *
12442502 CAGCACGCAAAGGGGGACCGGGCTGATCCTCGGCTTGTGCATTCTACCTCT-TCGGTCGACTGAG
64 CAGCACGC-AAGGGGGACCAGGCTGATCCTCGGCTTGCGCATTCTACCTCTCT-GGCCCACTGAG
* * * *
12442566 CGCCCGTACGCTCGTTTCATGGTTTGGCTTAG
127 CGCCCGCACACCCGTTTCATGGGTTGGCTTAG
* * *
12442598 GCATATGGAGTTTATTCCCAGTCT
1 GCATACGGAGTTCATTCCTAGTCT
12442622 TAGAGTTTGA
Statistics
Matches: 155, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
157 1 0.01
158 57 0.37
159 96 0.62
160 1 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCTAGTCTAAGACCAGACCGGATCGAGGGTTACGGCAGCAGGACCGACA
GCACGCAAGGGGGACCAGGCTGATCCTCGGCTTGCGCATTCTACCTCTCTGGCCCACTGAGCGCC
CGCACACCCGTTTCATGGGTTGGCTTAG
Found at i:12443765 original size:26 final size:26
Alignment explanation
Indices: 12443736--12443791 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
12443726 CGGGTTGGCT
*
12443736 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACAGAGTTCATTCCCA-GTC
12443762 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
12443788 TAAG
1 TAAG
12443792 ATCAGACTGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:12444353 original size:26 final size:25
Alignment explanation
Indices: 12444317--12444366 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
12444307 GTTGGCTTAG
*
12444317 GCATACAGAGTTTATTCCATGTCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
*
12444343 GCATACGGAGTTCATTCCAGTCTA
1 GCATACAGAGTTCATTCCAGTCTA
12444367 GCAGTTTGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:12444647 original size:26 final size:26
Alignment explanation
Indices: 12444611--12444663 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12444601 GTTGACTTAG
12444611 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12444637 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12444663 G
1 G
12444664 ATCGAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12444997 original size:159 final size:164
Alignment explanation
Indices: 12444736--12445148 Score: 384
Period size: 168 Copynumber: 2.5 Consensus size: 164
12444726 CTCGGCAAGC
* * * * *
12444736 GCATTCTGCCTCTCTGGTCGAC-CGAGTGCCG-CACGCTTGTTTCATGGGTTGGCTTAGGCATAG
1 GCATTATGCCTCTCCGGTCGGCTC-AGTGCCGTC-CGCTTGTTTCATGGGTTGACTTAGGCATAC
* * * *
12444799 GGAGTTCAT-TCCATGTCTAAGCACCAGCCGGACCGAAGGTTGT-G-G-C-A-A-TGGGACCGGC
64 AGAGTTCATCCCCA-GTCTAAGCACCAGCCAGACCGAAGGTTGTAGAGACGATAGTGGGACCAGC
*
12444857 ACCACACAGAA-GGGGACTAG-GTC-GATCCCCGGCTTGT
128 ACCACACA-AAGGGGGA-TAGAG-CAGATCCCCGACTTGT
* * *
12444894 GCATTATGCCTCTCCGGTCGGCTCAGTGCCAGTCCGCTCGTTTCATGGGTTGTCTTAGGCATATA
1 GCATTATGCCTCTCCGGTCGGCTCAGTGCC-GTCCGCTTGTTTCATGGGTTGACTTAGGCATACA
* * * **
12444959 GAGTTCATCCCCAATCTAAG-ATCAGATCAGACCGAAGGTTGTAGCAAGACCGATAGTGGGATTA
65 GAGTTCATCCCCAGTCTAAGCACCAG-CCAGACCGAAGGTTGTAG--AGA-CGATAGTGGGACCA
* *
12445023 GCAGCACACAAAGGGGGATCGAGCAGATCCCCGACTTGT
126 GCACCACACAAAGGGGGATAGAGCAGATCCCCGACTTGT
* * * * * **
12445062 GCATTATGCCTCTCCGGTCAGCTGAGCGCCCGTACGCTTATTTCATGGGTCAACTTAGGCATACA
1 GCATTATGCCTCTCCGGTCGGCTCAGTG-CCGTCCGCTTGTTTCATGGGTTGACTTAGGCATACA
12445127 GAGTTCATCCCCAGTCTAAGCA
65 GAGTTCATCCCCAGTCTAAGCA
12445149 TACGGAGTTC
Statistics
Matches: 207, Mismatches: 29, Indels: 27
0.79 0.11 0.10
Matches are distributed among these distances:
158 29 0.14
159 57 0.28
160 5 0.02
163 1 0.00
165 1 0.00
166 1 0.00
167 6 0.03
168 104 0.50
169 3 0.01
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (164 bp):
GCATTATGCCTCTCCGGTCGGCTCAGTGCCGTCCGCTTGTTTCATGGGTTGACTTAGGCATACAG
AGTTCATCCCCAGTCTAAGCACCAGCCAGACCGAAGGTTGTAGAGACGATAGTGGGACCAGCACC
ACACAAAGGGGGATAGAGCAGATCCCCGACTTGT
Found at i:12445150 original size:26 final size:26
Alignment explanation
Indices: 12445120--12445172 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12445110 GTCAACTTAG
*
12445120 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
12445146 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
12445172 G
1 G
12445173 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:12445624 original size:158 final size:158
Alignment explanation
Indices: 12445146--12445648 Score: 507
Period size: 158 Copynumber: 3.2 Consensus size: 158
12445136 CCCAGTCTAA
* * *
12445146 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTGCGACTGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGACA
* *
12445211 GCACGCAAGG-GGGATCGAGTCGATCCCTGGCTTGCA-CATTCTGCCTCTCCGACCGGTTGAGCG
66 GCACGC-AGGAGGGATCGAGTCGATCCCCGGCTTG-ATCATTCTGCCTCTCCGACCGGCTGAGCG
*
12445274 CCTGCACGCCCATTTCGTGGGTTGGCTTAG
129 CCTGCACGCTCATTTCGTGGGTTGGCTTAG
* * * ** * * * * *
12445304 GCATAGGGACTTCATT-CCATGTCTAAG-CCCCAGTCAGACCGAGGGTTGTGGCAGCGGGA-CCA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-TCGGACCGAGGGTTGCGACAGCAGGATCGA
* * * * *
12445366 GCAGCACGCAGAATGGGATCGAGCCGATCCCCGGCTTG-TGCATTATGCCTCTCCGGCCGGCTCA
64 -CAGCACGCAGGA-GGGATCGAGTCGATCCCCGGCTTGAT-CATTCTGCCTCTCCGACCGGCTGA
* * **
12445430 GCGCCCTG-ATGCTCCTTTCGTGGGTTCACTTAG
126 GCG-CCTGCACGCTCATTTCGTGGGTTGGCTTAG
* * *
12445463 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGATCAAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGACA
*** * * * **
12445528 GCTTACAGGAGGGATCGAGTCGGTCCCCGACTCGATCATTCTGCCTCTCTAACCGGCTGAGCGCC
66 GCACGCAGGAGGGATCGAGTCGATCCCCGGCTTGATCATTCTGCCTCTCCGACCGGCTGAGCGCC
* * * * *
12445593 AGCACGCTCGTTTCATGGGTTGGTTTCG
131 TGCACGCTCATTTCGTGGGTTGGCTTAG
*
12445621 GCATACGGAGTTCATTCCTAGTCTAAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGA
12445649 GTTTGAGCCA
Statistics
Matches: 271, Mismatches: 61, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
157 12 0.04
158 134 0.49
159 114 0.42
160 11 0.04
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGGAGGGATCGAGTCGATCCCCGGCTTGATCATTCTGCCTCTCCGACCGGCTGAGCGCC
TGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:12446471 original size:159 final size:160
Alignment explanation
Indices: 12446211--12446968 Score: 582
Period size: 159 Copynumber: 4.7 Consensus size: 160
12446201 TAGCACAATG
* * * * *
12446211 GGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGATCGGTTGAGTGACCG-ATGCT
1 GGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATCGGCTGAGCGCCCGCACGCT
**
12446275 CGTTTCGTGGGTTGGCTTAGGCATTGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGG
66 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGG
* *
12446340 TTGTGGCAGCGGGACTGACAGA-ACGCAGA
131 TTGCGGCAGCAGGACTGACAGAGACGCAGA
* * * * * * *
12446369 GGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGGTTGGCTCAGTGCCCGCACGCT
1 GGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATCGGCTGAGCGCCCGCACGCT
* * * * ** ** ** *
12446434 CATTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTACGATCGGATTGGAACGAGG
66 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACCGAGG
* *
12446498 GTTGCGGCAGTAGGAC-CAGCAGTAGGATCGGCAGCATGTAA
130 GTTGCGGCAGCAGGACTGA-CAG-A-GA----C-GCA-G--A
* ** * * * * * * * *
12446539 GGGGGACCGAACCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCAGCACGCC
1 GGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATCGGCTGAGCGCCCGCACGCT
* * *** *
12446604 CGTTTTGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCAAGGG
66 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGG
* * * *
12446669 TTGTGGCAGCGGGACTGGCAGCATA--CAGA
131 TTGCGGCAGCAGGACTGACAG-AGACGCAGA
* * * * * * * * * *
12446698 GGGGGATCAGGCCGATCCCCGACTTACACATTATGCCTCTTCGACCGGTTTAACACCTGCACGCC
1 GGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATCGGCTGAGCGCCCGCACGCT
* * * * * ** * * *
12446763 CGTTTCGTAGGTTGACCTAGGCAAACGGAGTTCATTCCCA-ATCTAAGATCGAACCAGACCCAGG
66 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACCGAGG
*
12446827 GTTGCGGCAGCAGGA-TCGACA-ACACGCAG-
130 GTTGCGGCAGCAGGACT-GACAGAGACGCAGA
* * * * * * *
12446856 GGGGGGTCGGGCCGATCCTCGGCTTGCACATTTTGCCTTTTCGGTCGGCTGAGCGCCCGCACGCT
1 GGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATCGGCTGAGCGCCCGCACGCT
* * *
12446921 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATCTCTAAGC
66 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12446969 ATACAGAGTT
Statistics
Matches: 462, Mismatches: 117, Indels: 42
0.74 0.19 0.07
Matches are distributed among these distances:
157 5 0.01
158 138 0.30
159 183 0.40
160 7 0.02
161 1 0.00
162 3 0.01
166 1 0.00
167 3 0.01
168 1 0.00
169 4 0.01
170 116 0.25
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (160 bp):
GGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGATCGGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGG
TTGCGGCAGCAGGACTGACAGAGACGCAGA
Found at i:12447315 original size:26 final size:26
Alignment explanation
Indices: 12447279--12447331 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12447269 GTTGACTTAG
*
12447279 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
12447305 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
12447331 G
1 G
12447332 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:12448001 original size:26 final size:26
Alignment explanation
Indices: 12447952--12448004 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12447942 GTTGGCTTAG
*
12447952 GCATACGGAGTTCATTGCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
12447978 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
12448004 G
1 G
12448005 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:12449961 original size:26 final size:26
Alignment explanation
Indices: 12449924--12449976 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12449914 GTTGACTTAG
*
12449924 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
12449950 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12449976 G
1 G
12449977 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12450194 original size:103 final size:103
Alignment explanation
Indices: 12450030--12450237 Score: 310
Period size: 103 Copynumber: 2.0 Consensus size: 103
12450020 AGGGGGGATC
* * * * * *
12450030 GAGCTGATCCCCGGCTTATGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCCCGTTTCAT
1 GAGCTGATCCCCGACTTACGCATTATGCCTCTCCGACTGGCTCAACGCCCGAACGCCCGTTTCAT
* *
12450095 GGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAA
66 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
12450133 GAGCTGATCCCCTGACTTACGCATTATGCCTCTCCGACTGGCTCAACG-CCGAACGCTCGTTTCG
1 GAGCTGATCCCC-GACTTACGCATTATGCCTCTCCGACTGGCTCAACGCCCGAACGCCCGTTTCA
12450197 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
65 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
12450236 GA
1 GA
12450238 TCGGACCAGA
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
103 64 0.68
104 30 0.32
ACGTcount: A:0.18, C:0.30, G:0.25, T:0.26
Consensus pattern (103 bp):
GAGCTGATCCCCGACTTACGCATTATGCCTCTCCGACTGGCTCAACGCCCGAACGCCCGTTTCAT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:12450594 original size:26 final size:26
Alignment explanation
Indices: 12450564--12450616 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12450554 GTTGACTTAG
12450564 GCATACAG-AGTTCATCCCTAGTCTAA
1 GCATA-AGTAGTTCATCCCTAGTCTAA
* *
12450590 GCATATGTAGTTCATTCCTAGTCTAA
1 GCATAAGTAGTTCATCCCTAGTCTAA
12450616 G
1 G
12450617 ATGGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATAAGTAGTTCATCCCTAGTCTAA
Found at i:12450957 original size:26 final size:26
Alignment explanation
Indices: 12450907--12450958 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12450897 GTTGGCTTAG
*
12450907 GCAAACGGAGTTCATTCCATGTCTAA
1 GCAAACGGAGTTCATTCCATATCTAA
12450933 GCAAACGGAGTTCATTCCCA-ATCTAA
1 GCAAACGGAGTTCATT-CCATATCTAA
12450959 TAGTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (26 bp):
GCAAACGGAGTTCATTCCATATCTAA
Found at i:12451664 original size:26 final size:26
Alignment explanation
Indices: 12451627--12451679 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12451617 GTTGACTTAG
*
12451627 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
12451653 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12451679 G
1 G
12451680 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12451940 original size:159 final size:157
Alignment explanation
Indices: 12451738--12452155 Score: 405
Period size: 159 Copynumber: 2.6 Consensus size: 157
12451728 GGATCGAGCT
** *
12451738 GATCCCCGGCTTATGCATTCTGCCTCTCCGA-CTGGCTGAGCGCCCGCACGCCCGTTTCATGGGT
1 GATCCCC-GCTTGCGCATTCTGCCTCTCCGATC-GGCTGAGCGCCCGCACGCCC-TTTCGTGGGT
* * * * *
12451802 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGA-TCGACGGTTGTGGCAGC
63 TGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCACCAGACCAAACT-GACGGTTGCGGCAGC
* ** * *
12451865 GGGACCGGCAGCACGCAGTAGGGGATCGGGTC
127 AGGACCAACAGCACGCAG-AGGGGACCGGGCC
* * * * *
12451897 GATCCCCAGCTTGCGCATTATGCCTCTCCAATCGGCTCAGCGCCCACATGCTCCTTTCGTGGGTT
1 GATCCCC-GCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGC-CCTTTCGTGGGTT
** * * * *
12451962 GATTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATCGGATCAAACTGAGGGTTGCGGCAGCA
64 GGCTTAGGCATACGAAGTTCATT-CCATGTCTAAGCACCAGACCAAACTGACGGTTGCGGCAGCA
* * *
12452025 GGATCAACAGCACGTAGGGGGGACCGGGCC
128 GGACCAACAGCACGCAGAGGGGACCGGGCC
* * * * * *
12452055 GATCCTCGACTTGCGCATTCTACCTCTTCGGTCGGCTGAGCGCCCGCACGCTCTTTTTGTGGGTT
1 GATCCCCG-CTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGC-CCTTTCGTGGGTT
*
12452120 GGCTTAGGCATACGAAATTCATTCCATGTCTAAGCA
64 GGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
12452156 TACAAGTTCA
Statistics
Matches: 209, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
157 4 0.02
158 91 0.44
159 107 0.51
160 7 0.03
ACGTcount: A:0.18, C:0.29, G:0.28, T:0.24
Consensus pattern (157 bp):
GATCCCCGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCTTTCGTGGGTTGG
CTTAGGCATACGAAGTTCATTCCATGTCTAAGCACCAGACCAAACTGACGGTTGCGGCAGCAGGA
CCAACAGCACGCAGAGGGGACCGGGCC
Found at i:12452167 original size:25 final size:26
Alignment explanation
Indices: 12452127--12452178 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
12452117 GTTGGCTTAG
12452127 GCATACGAAATTCATT-CCATGTCTAA
1 GCATACGAAATTCATTCCCA-GTCTAA
*
12452153 GCATAC-AAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
12452178 G
1 G
12452179 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:12453703 original size:159 final size:158
Alignment explanation
Indices: 12453421--12453901 Score: 538
Period size: 159 Copynumber: 3.0 Consensus size: 158
12453411 TCATTCCCAA
* * * * * * *
12453421 TCTAAGATCAGACC-AGACCGAGGGTTGCGGCAACAGGATCGACAGCATGCATGGGGGATCGGGC
1 TCTAAGACCAGACCGA-ACTGAGGGTTGTGGCAGCAGGATCGACAGCACGTAAGGGGGATCGGGC
* * * * * *
12453485 CGATCCCCAGCTTTCGCATTCTGCTTCTCCGGTCGGTTGAGTGCCCGTACGCCCTTTTCGTGGGT
65 CGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGT
*
12453550 TGGCTTAGGCATAGGGAGTTCATTCCATG
130 TGGCTTAGGCATACGGAGTTCATTCCATG
* * * * *
12453579 TCTTAGCCCCA-ACCGGATTGAGGGTTGTGGCAGCAGGATCGACAACACGTAGAGGGGGATCGGG
1 TCTAAG-ACCAGACCGAACTGAGGGTTGTGGCAGCAGGATCGACAGCACGTA-AGGGGGATCGGG
* * ** *
12453643 CCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCACCCGCACGCTCGTTTCGGGGG
64 CCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGG
* *
12453708 TTGTCTTAGGCATACAGAGTTCATTCCCA-G
129 TTGGCTTAGGCATACGGAGTTCATT-CCATG
* * * * **
12453738 TCTAAGATCAGATCGAACTGAGGGTTGTGGCAGCAGGATCGACTGCACGTAAGGGGGACCGGGTT
1 TCTAAGACCAGACCGAACTGAGGGTTGTGGCAGCAGGATCGACAGCACGTAAGGGGGATCGGGCC
* * * * * *
12453803 GATCCCCGGTTTGTGCATTCTGCCTCTCCGG-CTAGCTGAGTGCCTGCACGTTCGTTTCGTGGGT
66 GATCCCCAGCTTGCGCATTCTGCCTCTCCGGTC-GGCTGAGTGCCCGCACGCTCGTTTCGTGGGT
*
12453867 TGGCTTAGGCATACGGAGTTCATTCCTTG
130 TGGCTTAGGCATACGGAGTTCATTCCATG
12453896 TCTAAG
1 TCTAAG
12453902 CATATGGAGT
Statistics
Matches: 265, Mismatches: 51, Indels: 14
0.80 0.15 0.04
Matches are distributed among these distances:
157 3 0.01
158 129 0.49
159 130 0.49
160 3 0.01
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
TCTAAGACCAGACCGAACTGAGGGTTGTGGCAGCAGGATCGACAGCACGTAAGGGGGATCGGGCC
GATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCATG
Found at i:12453874 original size:158 final size:157
Alignment explanation
Indices: 12453400--12453901 Score: 526
Period size: 158 Copynumber: 3.2 Consensus size: 157
12453390 CACAGTCTAA
* * * * * *
12453400 GCATACAGAATTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAACAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACGA-ACTGAGGGTTGTGGCAGCAGGATCGACA
* * * * * *
12453465 GCATGCATGGGGGATCGGGCCGATCCCCAGCTTT-CGCATTCTGCTTCTCCGGTCGGTTGAGTGC
65 GCACGTAAGGGGGATCGGGCCGATCCCC-GGTTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGC
* * *
12453529 CCGTACGCCCTTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * ** * *
12453558 GCATAGGGAGTTCATT-CCATGTCTTAGCCCCA-ACCGGATTGAGGGTTGTGGCAGCAGGATCGA
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGA-CGAACTGAGGGTTGTGGCAGCAGGATCGA
* * * * * *
12453621 CAACACGTAGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGC
63 CAGCACGTA-AGGGGGATCGGGCCGATCCCCGGTTTGCGCATTCTGCCTCTCCGGTCGGCTGAGT
* * *
12453686 ACCCGCACGCTCGTTTCGGGGGTTGTCTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
12453717 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGAACTGAGGGTTGTGGCAGCAGGATCGACT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGA-CGAACTGAGGGTTGTGGCAGCAGGATCGACA
* ** * *
12453782 GCACGTAAGGGGGACCGGGTTGATCCCCGGTTTGTGCATTCTGCCTCTCCGG-CTAGCTGAGTGC
65 GCACGTAAGGGGGATCGGGCCGATCCCCGGTTTGCGCATTCTGCCTCTCCGGTC-GGCTGAGTGC
* *
12453846 CTGCACGTTCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* **
12453875 GCATACGGAGTTCATTCCTTGTCTAAG
1 GCATACAGAGTTCATTCCCAGTCTAAG
12453902 CATATGGAGT
Statistics
Matches: 277, Mismatches: 59, Indels: 16
0.79 0.17 0.05
Matches are distributed among these distances:
157 4 0.01
158 144 0.52
159 126 0.45
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACGAACTGAGGGTTGTGGCAGCAGGATCGACAG
CACGTAAGGGGGATCGGGCCGATCCCCGGTTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12453911 original size:26 final size:26
Alignment explanation
Indices: 12453875--12453927 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12453865 GTTGGCTTAG
**
12453875 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12453901 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12453927 G
1 G
12453928 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12454285 original size:26 final size:26
Alignment explanation
Indices: 12454255--12454307 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12454245 GTTGACTTAG
*
12454255 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
12454281 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12454307 G
1 G
12454308 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.