Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 84 of 402
Found at i:12454979 original size:26 final size:26
Alignment explanation
Indices: 12454950--12455005 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
12454940 TAGGTTGACT
*
12454950 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
12454976 TAAGCATACGAAGTTCATCCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
12455002 TAAG
1 TAAG
12455006 ATCAAACCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAGTC
Found at i:12455087 original size:197 final size:197
Alignment explanation
Indices: 12454719--12455092 Score: 462
Period size: 197 Copynumber: 1.9 Consensus size: 197
12454709 TACCAGTCGG
* * * * * *
12454719 CTGAGCGCCCGTATGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTATGT
1 CTGAGCGCCCGCATGCTCGTTTCATAGGTTGACTTAAGCATACGGAGTTCATCCCATGTCTAAGC
* * * * * * * * * *
12454784 GTACAAAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGCGGCAGCAGGATTGACAGC
66 ATACAAAGTTCATCCCCAGTCTAAGATCAAACCAGACCGAGGGATACGACAGCAGGATTGACAAC
* * * *
12454849 ACACAGGGGGTATCAGGCCGATCCTTGACTTGCGCATTCTGCCTCTCCAACCGGCTTTTGTGGCC
131 ACACAGGGGGGACCAGGCCGATCCTCGACTTGCACATTCTGCCTCTCCAACCGGCTTTTGTGGCC
12454914 GA
196 GA
* *
12454916 CTGAGCGTCCGCATGCTCGTTTCGTAGGTTGACTTAAGCATACGGAGTTCATCCCCA-GTCTAAG
1 CTGAGCGCCCGCATGCTCGTTTCATAGGTTGACTTAAGCATACGGAGTTCAT-CCCATGTCTAAG
* * * *
12454980 CATACGAAGTTCATCCCCAGTCTAAGATCAAACCAGACCTAGGGATACGACAGTAGGATTGGCAA
65 CATACAAAGTTCATCCCCAGTCTAAGATCAAACCAGACCGAGGGATACGACAGCAGGATTGACAA
* ** *
12455045 CACGCAGGGGGGACCAGGCCGATCCTCGGTTTGCATATTCTGCCTCTC
130 CACACAGGGGGGACCAGGCCGATCCTCGACTTGCACATTCTGCCTCTC
12455093 TGGTCGGCTG
Statistics
Matches: 146, Mismatches: 30, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
197 143 0.98
198 3 0.02
ACGTcount: A:0.22, C:0.26, G:0.26, T:0.25
Consensus pattern (197 bp):
CTGAGCGCCCGCATGCTCGTTTCATAGGTTGACTTAAGCATACGGAGTTCATCCCATGTCTAAGC
ATACAAAGTTCATCCCCAGTCTAAGATCAAACCAGACCGAGGGATACGACAGCAGGATTGACAAC
ACACAGGGGGGACCAGGCCGATCCTCGACTTGCACATTCTGCCTCTCCAACCGGCTTTTGTGGCC
GA
Found at i:12455325 original size:26 final size:26
Alignment explanation
Indices: 12455296--12455348 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12455286 GTTGGCTTAG
12455296 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12455322 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12455348 G
1 G
12455349 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12456724 original size:26 final size:26
Alignment explanation
Indices: 12456688--12456740 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12456678 ATTGGCATAG
*
12456688 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
12456714 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
12456740 G
1 G
12456741 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:12457006 original size:157 final size:158
Alignment explanation
Indices: 12456714--12457056 Score: 394
Period size: 157 Copynumber: 2.2 Consensus size: 158
12456704 CCCAATCTAA
* * * *
12456714 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGATGGTTGCGGCAGTAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGTAGGACCGG
* ** *
12456777 TAGCACGTAGGGGGACTGGGTCGATCCCTGGCTTGCGTATTTTGCCTCTCCGGCCAGCTGAGTAC
65 TAGCACGTAGGGGGACTGGGCCGATCCCTGGCTTGCGTATTTTGCCTCTCCAACCAGCTGAATAC
* *
12456842 CCGCACGCCCGTTTCATGGGTTGGCTTAG
130 CCACACGCCCATTTCATGGGTTGGCTTAG
* * * * *
12456871 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGGCAGTGGGACCGGT
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGTAGGACCGGT
* **
12456935 AGCACACAG-AGGGGGA-TCGGGCCGATCCC-GTCTTGCGTA-TTTGCCTCTCCAACTGGCTGAA
66 AG--CAC-GTAGGGGGACT-GGGCCGATCCCTGGCTTGCGTATTTTGCCTCTCCAACCAGCTGAA
* * *
12456996 TGCCCACACGCTCATTTCGTGGGTTGGCTTAG
127 TACCCACACGCCCATTTCATGGGTTGGCTTAG
*
12457028 GCATCCGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
12457057 TACGGAGTTC
Statistics
Matches: 156, Mismatches: 24, Indels: 12
0.81 0.12 0.06
Matches are distributed among these distances:
156 3 0.02
157 119 0.76
158 13 0.08
159 20 0.13
160 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGTAGGACCGGT
AGCACGTAGGGGGACTGGGCCGATCCCTGGCTTGCGTATTTTGCCTCTCCAACCAGCTGAATACC
CACACGCCCATTTCATGGGTTGGCTTAG
Found at i:12457078 original size:26 final size:26
Alignment explanation
Indices: 12457028--12457080 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12457018 GTTGGCTTAG
* *
12457028 GCATCCGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
12457054 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
12457080 G
1 G
12457081 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:12457770 original size:26 final size:26
Alignment explanation
Indices: 12457741--12457819 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
12457731 GTTGACTTAG
12457741 GCATACGAAGTTCATATCCAGTCTAA
1 GCATACGAAGTTCATATCCAGTCTAA
* * * *
12457767 GCATATGGAGTTTATACCCAGTCTAA
1 GCATACGAAGTTCATATCCAGTCTAA
* *
12457793 GTATACGAAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATATCCAGTCTAA
12457819 G
1 G
12457820 ATTGGACCGG
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATATCCAGTCTAA
Found at i:12458495 original size:26 final size:26
Alignment explanation
Indices: 12458465--12458517 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12458455 GTTGGCTTAG
12458465 GCATACGGAGTTCATCCCCAGACTAA
1 GCATACGGAGTTCATCCCCAGACTAA
* *
12458491 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGACTAA
12458517 G
1 G
12458518 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGACTAA
Found at i:12459358 original size:26 final size:26
Alignment explanation
Indices: 12459328--12459383 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
12459318 TGGGTTAGCT
12459328 TAAGCATACGGAGTTCATTC-CATGCC
1 TAAGCATACGGAGTTCATTCACA-GCC
*
12459354 TAAGCATATGGAGTTCATTCACAGCC
1 TAAGCATACGGAGTTCATTCACAGCC
12459380 TAAG
1 TAAG
12459384 ATTAAACCAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 26 0.93
27 2 0.07
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCACAGCC
Found at i:12459911 original size:26 final size:26
Alignment explanation
Indices: 12459882--12459934 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12459872 GTTGGCTTAG
* *
12459882 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGAAGGTCATTCCCA-GTCTAA
12459908 GCATATGAAGGTCATTCCCAGTCTAA
1 GCATATGAAGGTCATTCCCAGTCTAA
12459934 G
1 G
12459935 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGAAGGTCATTCCCAGTCTAA
Found at i:12460641 original size:26 final size:26
Alignment explanation
Indices: 12460605--12460657 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12460595 GTTGACTTAG
*
12460605 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
12460631 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
12460657 G
1 G
12460658 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:12460939 original size:159 final size:157
Alignment explanation
Indices: 12460672--12461132 Score: 459
Period size: 159 Copynumber: 2.9 Consensus size: 157
12460662 GATCGGACGA
* * ** * * * *
12460672 AGGGTTGCGATAGCAGGATCGACAGCACGTAGGGGGGACCAGGCTGATCCTCGACTTGTGCATTT
1 AGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGG-CCAAACTGATCCCCGGCTTGCGCATTA
* * * * * *
12460737 TGCCTCTCCGACC-AGCTGAGCGCCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTT
65 TACCTCTCCGACCGA-CTGAACGCCCGAACGCTCATTTCGTGGGTTGGCTTAGGCATA-GGAGTT
* * * *
12460801 CATTCCATGTCTAAGCCCCAG-TCGGACTG
128 CATTCCATGTCTAAGCACCAGACCAGACCG
* * * **
12460830 AGGGTTGTGGTTGC-GAGA-CTGGCAGCACGCAGTGGGGGACCGGA-TCGATCCCCGGCTTGCGC
1 AGGGTTGCGGTAGCAG-GATC-GACAGCACGCAG-GGGGG-CCAAACT-GATCCCCGGCTTGCGC
* * * * *
12460892 ATTATGCCTCTCCGATCGACTTAACGCCCGAATGCTCATTTCGTGGGTTGACTTAGGCATACGGA
61 ATTATACCTCTCCGACCGACTGAACGCCCGAACGCTCATTTCGTGGGTTGGCTTAGGCATA-GGA
* *
12460957 GTTCATTCCCA-GTCTAAG-ATCGGACCAGACCG
125 GTTCATT-CCATGTCTAAGCACCAGACCAGACCG
* * *
12460989 AGGGTTGCGGTAGCAGGATCGACAGTACGCAGGGGGGCCAAACTGTTCCCCGGCTTGCGCATTCT
1 AGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGCCAAACTGATCCCCGGCTTGCGCATTAT
* * *
12461054 ACCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGAGTTCAT
66 ACCTCTCCGACCGACTGAACGCCCGAACGCTCATTTCGTGGGTTGGCTTAGGCATAGGAGTTCAT
12461119 TCCATGTCTAAGCA
131 TCCATGTCTAAGCA
12461133 TACGAAGTTC
Statistics
Matches: 248, Mismatches: 43, Indels: 25
0.78 0.14 0.08
Matches are distributed among these distances:
155 3 0.01
156 17 0.07
157 73 0.29
158 32 0.13
159 117 0.47
160 6 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
AGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGCCAAACTGATCCCCGGCTTGCGCATTAT
ACCTCTCCGACCGACTGAACGCCCGAACGCTCATTTCGTGGGTTGGCTTAGGCATAGGAGTTCAT
TCCATGTCTAAGCACCAGACCAGACCG
Found at i:12461336 original size:26 final size:26
Alignment explanation
Indices: 12461300--12461352 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12461290 GTTGGCCTAG
12461300 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12461326 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12461352 G
1 G
12461353 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12462384 original size:26 final size:26
Alignment explanation
Indices: 12462347--12462399 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12462337 GTTGACTTAG
12462347 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
12462373 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12462399 G
1 G
12462400 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12463522 original size:25 final size:25
Alignment explanation
Indices: 12463473--12463523 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
12463463 CCCGACCAGC
* *
12463473 GCATTATGCCTATTCGACCGGCTCA
1 GCATTATGCCTATCCGACCGACTCA
* *
12463498 GCATTATGCCTCTCCGATCGACTCA
1 GCATTATGCCTATCCGACCGACTCA
12463523 G
1 G
12463524 TGCCCGCACG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.20, C:0.33, G:0.20, T:0.27
Consensus pattern (25 bp):
GCATTATGCCTATCCGACCGACTCA
Found at i:12463822 original size:342 final size:341
Alignment explanation
Indices: 12463157--12463782 Score: 855
Period size: 342 Copynumber: 1.8 Consensus size: 341
12463147 CCCGGCTTGC
* * * *
12463157 GCATTATGCCTCTCCGACAGGCAGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
1 GCATTATGCCTCTCCGACAGACACAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAAACA
* * *
12463222 GAATTCATTCCCAGTCTAAGATCAGATCGAACTGAGGGTTACAGAGTAGGATCGACAACGCACAG
66 GAATTCATTCCCAGTCTAAGATCAGATAGAACTGAGGGTTACAGAGCAAGATCGACAACGCACAG
* * * * * * ** *
12463287 GGGGGACCGGGTCGATCTCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGTGCCCACATGCC
131 GGGGGACCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCACACGCC
*
12463352 TATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGG
196 CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGG
** *
12463417 TTGTGGCAGTGGGACTGGCAGCACACAGAGGGGAACTGGGCTGATCCCCGACCAGCGCATTATGC
261 TTGTGGCAGCAGGACTGGCACCACACAGAGGGGAACTGGGCTGATCCCCGACCAGCGCATTATGC
12463482 CTATTCGACCGGCTCA
326 CTATTCGACCGGCTCA
* * * * *
12463498 GCATTATGCCTCTCCGATC-GACTCAGTGCCCGCACGCTCGTTTTGTGTGTTGACTTAGGCAAAC
1 GCATTATGCCTCTCCGA-CAGACACAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAAAC
* * * * * * *
12463562 AGAGTTTATTTCCAGTCTAAGATTAGACTAGATC-GAGGGTTACGGTAGCAAGATCGACAGCAG-
65 AGAATTCATTCCCAGTCTAAGATCAGA-TAGAACTGAGGGTTACAG-AGCAAGATCGACAAC-GC
*
12463625 ACAGGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCA
127 ACAGGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCACA
* *
12463690 CGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCG
192 CGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCG
*
12463755 AGGGTTGTGGTAGCAGGA-TCGGCACCAC
257 AGGGTTGTGGCAGCAGGACT-GGCACCAC
12463783 GTAGAAGGGG
Statistics
Matches: 244, Mismatches: 36, Indels: 9
0.84 0.12 0.03
Matches are distributed among these distances:
341 87 0.36
342 156 0.64
343 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (341 bp):
GCATTATGCCTCTCCGACAGACACAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAAACA
GAATTCATTCCCAGTCTAAGATCAGATAGAACTGAGGGTTACAGAGCAAGATCGACAACGCACAG
GGGGGACCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCACACGCC
CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGG
TTGTGGCAGCAGGACTGGCACCACACAGAGGGGAACTGGGCTGATCCCCGACCAGCGCATTATGC
CTATTCGACCGGCTCA
Found at i:12463978 original size:159 final size:159
Alignment explanation
Indices: 12463498--12464060 Score: 396
Period size: 159 Copynumber: 3.5 Consensus size: 159
12463488 GACCGGCTCA
* * * * ** * * * * * *
12463498 GCATTATGCCTCTCCGATCGACTCAGTGCCCGCACGCTCGTTTTGTGTGTTGACTTAGGCAAACA
1 GCATTATACTTCTCCGGTAGACTCAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACG
* ** * * * * *
12463563 GAGTTTATTTCCA-GTCTAAG-ATTAGACTAGATCGAGGGTT-ACGGTAGCAAGATCGACAGCA-
66 GAGTTCA-TTCCATGTCTAAGCAACAG-CTAGACCGAGAGTTGTC-GTAGCAGGATCGACACCAC
* * * *
12463624 GACAG-GGGGGACCGGGCCAATCCCCGACTTGC
128 G-CAGAAGGGGATCGGGTCGATCCCCGACTTGC
* * * *** * * *
12463656 GCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
1 GCATTATACTTCTCCGGTAGACTCAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACG
** * * * * *
12463721 GAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGTAGCAGGATCGGCACCACGTA
66 GAGTTCATTCCATGTCTAAGCAACAGCTAGACCGAGAGTTGTCGTAGCAGGATCGACACCACGCA
* *
12463786 GAAGGGGATCGGGTCGATCCTCGATTTGC
131 GAAGGGGATCGGGTCGATCCCCGACTTGC
** * * *
12463815 GCATTATGAC-TCTTTGGCTAG-CTCAGCGCTCGCACGCCCGTTTCGTGGGTTGACTTAGGCATA
1 GCATTAT-ACTTCTCCGG-TAGACTCAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
* *
12463878 TGGAGTTCATTCCCA-GTCTAAG-AACAGACTAGACCGAGAGTTG-CGTCCA-CAGGATCGACAG
64 CGGAGTTCATT-CCATGTCTAAGCAACAG-CTAGACCGAGAGTTGTCGT--AGCAGGATCGACAC
* * * * *
12463939 CACGCATAGGGGGA-CTGGG-CTGGTCCCCGGCTTGT
125 CACGCAGAAGGGGATC-GGGTC-GATCCCCGACTTGC
* * * * *
12463974 GCATTCTACTTCTCCGGTCGATTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
1 GCATTATACTTCTCCGGTAGACTCAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACG
12464039 GAGTTCATTCCATGTCTAAGCA
66 GAGTTCATTCCATGTCTAAGCA
12464061 TACGGAGTTA
Statistics
Matches: 319, Mismatches: 69, Indels: 32
0.76 0.16 0.08
Matches are distributed among these distances:
157 5 0.02
158 108 0.34
159 199 0.62
160 7 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (159 bp):
GCATTATACTTCTCCGGTAGACTCAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCAACAGCTAGACCGAGAGTTGTCGTAGCAGGATCGACACCACGCA
GAAGGGGATCGGGTCGATCCCCGACTTGC
Found at i:12464068 original size:26 final size:26
Alignment explanation
Indices: 12464032--12464084 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12464022 GTTGGCTTAG
*
12464032 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTAATTCTCA-GTCTAA
12464058 GCATACGGAGTTAATTCTCAGTCTAA
1 GCATACGGAGTTAATTCTCAGTCTAA
12464084 G
1 G
12464085 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCTCAGTCTAA
Found at i:12464411 original size:26 final size:26
Alignment explanation
Indices: 12464381--12464431 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12464371 TGACTTAGGT
*
12464381 ATACGGAGTTCATCCCCAGTTTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
12464407 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
12464432 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:12465064 original size:157 final size:157
Alignment explanation
Indices: 12464665--12465065 Score: 457
Period size: 158 Copynumber: 2.5 Consensus size: 157
12464655 TTGGCTTACA
* * *
12464665 CATTATGCCTCTTCGGCCAGCTCAGTGCCTGCACGCTCATTTCCTGGGTTGACTTATGCATACGG
1 CATTATGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTATGCATACGG
* * * * *
12464730 AGTTCATTCCCAGTGTAAGAGTGGACCGGATCGAGGTTTGCAACAGCAGGATCGACAACACACGA
66 AGTTCATTCCCAGTCTAAGA-TGGACCAGACCCAGGGTTGCAACAGCAGGATCGACAACACACGA
*
12464795 GGGGGATCGAGCCGATCCCCAGCTTGCG
130 AGGGGATCGAGCCGATCCCCAGCTTGCG
* * * *
12464823 TATTATGCCTCTTCGACCGGCTCAGTGTCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGG
1 CATTATGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTATGCATACGG
* * * * *
12464888 AGTTCATT-CTATGTCTAAGATCGGATCAGACCCAGGGTTGCGACAGCAGGATCGACAGCATAC-
66 AGTTCATTCCCA-GTCTAAGAT-GGACCAGACCCAGGGTTGCAACAGCAGGATCGACAACACACG
* * * *
12464951 AAGGGGATTGGGCTGATCCCC-GTCTTGTG
129 AAGGGGATCGAGCCGATCCCCAG-CTTGCG
* * * ** * * * *
12464980 CATTTTGCCTCTCCGGCCGGCTGAGTGCCCGCGTGCTCATTTCGTGGGTTGCCCTAGGCATACGG
1 CATTATGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTATGCATACGG
*
12465045 AGTTCATTCCCAGTTTAAGAT
66 AGTTCATTCCCAGTCTAAGAT
12465066 TTTGAGCCAT
Statistics
Matches: 202, Mismatches: 37, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
156 1 0.00
157 93 0.46
158 108 0.53
ACGTcount: A:0.19, C:0.27, G:0.27, T:0.26
Consensus pattern (157 bp):
CATTATGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTATGCATACGG
AGTTCATTCCCAGTCTAAGATGGACCAGACCCAGGGTTGCAACAGCAGGATCGACAACACACGAA
GGGGATCGAGCCGATCCCCAGCTTGCG
Found at i:12466056 original size:159 final size:158
Alignment explanation
Indices: 12465799--12466086 Score: 377
Period size: 159 Copynumber: 1.8 Consensus size: 158
12465789 CAGATCGGAA
* * *
12465799 GGATCGGCAACACGCAGGAGGGACCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTTCGATCGA
1 GGATCGGCAACACGCAGGAGGGACCGGGCCAATCCCCAACTTGCACATTATGCCTCTTCGATCGA
* * **
12465864 CTGAGCATCCGCACGCCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC-ATGTCTAAG
66 CTCAGCACCCGCACGCCTATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCTA-GTCTAAG
12465928 CCCCAGTCGGATCGAGGGTTGTGGCAGCG
130 CCCCAGTCGGATCGAGGGTTGTGGCAGCG
* * * * *
12465957 GGATCGGCAACACGCAGAGGGGGATCGGGTCAATCCTCAGCTTGCACATTATGCCT-TTCCGA-C
1 GGATCGGCAACACGCAG-GAGGGACCGGGCCAATCCCCAACTTGCACATTATGCCTCTT-CGATC
* *
12466020 TGACTCAGCGCCCGCACG-CTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCT
64 -GACTCAGCACCCGCACGCCT-ATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCT
12466084 AAG
127 AAG
12466087 ATCGAATCAG
Statistics
Matches: 111, Mismatches: 14, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
158 22 0.20
159 88 0.79
160 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GGATCGGCAACACGCAGGAGGGACCGGGCCAATCCCCAACTTGCACATTATGCCTCTTCGATCGA
CTCAGCACCCGCACGCCTATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGC
CCCAGTCGGATCGAGGGTTGTGGCAGCG
Found at i:12466254 original size:26 final size:26
Alignment explanation
Indices: 12466216--12466268 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12466206 GTTGGGTTAG
* **
12466216 GCATACAGTGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12466242 GCATACAGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12466268 G
1 G
12466269 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12467169 original size:26 final size:26
Alignment explanation
Indices: 12467140--12467192 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
12467130 ATTGGCTTAG
12467140 GCATAC-GATGTTCATT-CCATGTCTAA
1 GCATACAGAT-TTCATTCCCA-GTCTAA
12467166 GCATACAGATTTCATTCCCAGTCTAA
1 GCATACAGATTTCATTCCCAGTCTAA
12467192 G
1 G
12467193 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (26 bp):
GCATACAGATTTCATTCCCAGTCTAA
Found at i:12468061 original size:159 final size:159
Alignment explanation
Indices: 12467815--12468723 Score: 737
Period size: 158 Copynumber: 5.7 Consensus size: 159
12467805 GGGGGGATAT
* * * *
12467815 GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATG
1 GGCCGATCCCCGGCTTGCGCATACTGCCTCTCCGGCCGGCTCAGCACCCGCACGCTCGTTTCGTG
* * *
12467880 GGTTGGCTTAGGCATACGGAGTTC-TTTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCA
66 GGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCCCCAGTCAGACTGAGGGTTGTGGCA
*
12467944 GCAGGACCGGTAGCACACAGAAGGGGACCA
130 GCAGGACCGGCAGCACACAGAAGGGGACCA
* * ** * * *
12467974 GGCCGATCCTCGGCTTGTGCAATAC-GCCTCTCCGATCGGCTCAGCGCCTGCATGCTCGTTTCGT
1 GGCCGATCCCCGGCTTGCGC-ATACTGCCTCTCCGGCCGGCTCAGCACCCGCACGCTCGTTTCGT
* ** *
12468038 GGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG-ATCAGATCAGACCGAGGGTTGCT-G
65 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCCAG-TCAGACTGAGGGTTG-TGG
* * * *** * *
12468101 CAACAGGATCGACAGCATGTAG-GGGGGATCA
128 CAGCAGGACCGGCAGCACACAGAAGGGGACCA
* * * * * * *
12468132 GGTCGATCCCCGGCTTGCGCATTCTGCCTGTCCGGCCAGCTAAGCACCCGCACGTTCATTTCGTG
1 GGCCGATCCCCGGCTTGCGCATACTGCCTCTCCGGCCGGCTCAGCACCCGCACGCTCGTTTCGTG
* *
12468197 GGTTGGCTTAGGCATACGGACTTCATT-CCATGTCTAAGCCCCAG-CTAGACTGAGGGTTGTGGC
66 GGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCCCCAGTC-AGACTGAGGGTTGTGGC
*
12468260 CGCAGGACCGGCAGCACACAGAAGGGGACCA
129 AGCAGGACCGGCAGCACACAGAAGGGGACCA
* ** * *
12468291 GGCCGATCCCCGGCTTGCGCATTA-TGCCTCTCCGGTCGGCTCAGTGCCCACATGCTCGTTTCGT
1 GGCCGATCCCCGGCTTGCGCA-TACTGCCTCTCCGGCCGGCTCAGCACCCGCACGCTCGTTTCGT
* ** * *
12468355 GGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAG-ATCAGATCAGACCGAAGGTTGCT-G
65 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCCAG-TCAGACTGAGGGTTG-TGG
* * * ** * **
12468418 CAGTAGGATCGACAGCATGCAG-GGGGGATTA
128 CAGCAGGACCGGCAGCACACAGAAGGGGACCA
* * * * * ** * * *
12468449 GGTCGATCCCTGGCTTGCTCATTCTGCCTCTCCGGTCGGCGGAGCGCCCGCACACTTGTTTCGTG
1 GGCCGATCCCCGGCTTGCGCATACTGCCTCTCCGGCCGGCTCAGCACCCGCACGCTCGTTTCGTG
* ** * * * *
12468514 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGATCGGGCCGAGGGTTGGGGCA
66 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCCAG-TCAGACTGAGGGTTGTGGCA
* * ***
12468578 GCAAGACCAGCAGCAGGATCGGCAGCACGCAGAGGGGGATTG
130 GC-AG----G-A-C-----CGGCAGCACACAGAAGGGGACCA
** * * * * * **
12468620 GGCCGATCCCCTACTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCACCCACACGCTTGTTTTATG
1 GGCCGATCCCCGGCTTGCGCATACTGCCTCTCCGGCCGGCTCAGCACCCGCACGCTCGTTTCGTG
*
12468685 GGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGC
66 GGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGC
12468724 ATACAAAGTT
Statistics
Matches: 599, Mismatches: 119, Indels: 51
0.78 0.15 0.07
Matches are distributed among these distances:
157 9 0.02
158 235 0.39
159 230 0.38
160 15 0.03
163 1 0.00
164 1 0.00
170 14 0.02
171 94 0.16
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
GGCCGATCCCCGGCTTGCGCATACTGCCTCTCCGGCCGGCTCAGCACCCGCACGCTCGTTTCGTG
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCCAGTCAGACTGAGGGTTGTGGCAG
CAGGACCGGCAGCACACAGAAGGGGACCA
Found at i:12468209 original size:158 final size:160
Alignment explanation
Indices: 12467757--12468722 Score: 934
Period size: 159 Copynumber: 6.0 Consensus size: 160
12467747 CATCAAAAAT
* * * *
12467757 AGATCAAACCAGACCGAGGGTTGCTGCAGCAGGATCGACAGCACGTAGGGGGGGAT-ATGGCCGA
1 AGATCAGATCAGACCGAGGGTTGCTGCAGCAGGATCGACAGCACGCAGAGGGGGATCA-GGCCGA
* *
12467821 TCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGG
65 TCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGG
*
12467886 CTTAGGCATACGGAGTTC-TTTCCATGTCTA
130 CTTAGGCATACGGAGTTCATTCCCATGTCTA
** * * * ** * * *
12467916 AGCCCCAG-TCGGACTGAGGGTTG-TGGCAGCAGGACCGGTAGCACACAGAAGGGGACCAGGCCG
1 AG-ATCAGATCAGACCGAGGGTTGCT-GCAGCAGGATCGACAGCACGCAGAGGGGGATCAGGCCG
* * * ** * * * *
12467979 ATCCTCGGCTTGTGCAATAC-GCCTCTCCGATCGGCTCAGCGCCTGCATGCTCGTTTCGTGGGTT
64 ATCCCCGGCTTGCGC-ATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
* *
12468043 GACTTAGGCATATGGAGTTCATTCCCA-GTCTA
128 GGCTTAGGCATACGGAGTTCATTCCCATGTCTA
* * * *
12468075 AGATCAGATCAGACCGAGGGTTGCTGCAACAGGATCGACAGCATGTAG-GGGGGATCAGGTCGAT
1 AGATCAGATCAGACCGAGGGTTGCTGCAGCAGGATCGACAGCACGCAGAGGGGGATCAGGCCGAT
* * * * *
12468139 CCCCGGCTTGCGCATTCTGCCTGTCCGGCCAGCTAAGCACCCGCACGTTCATTTCGTGGGTTGGC
66 CCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGC
*
12468204 TTAGGCATACGGACTTCATT-CCATGTCTA
131 TTAGGCATACGGAGTTCATTCCCATGTCTA
** * * * * * * * *
12468233 AGCCCCAGCT-AGACTGAGGGTTG-TGGCCGCAGGACCGGCAGCACACAGAAGGGGACCAGGCCG
1 AG-ATCAGATCAGACCGAGGGTTGCT-GCAGCAGGATCGACAGCACGCAGAGGGGGATCAGGCCG
* * * ** * *
12468296 ATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGTGCCCACATGCTCGTTTCGTGGGTTG
64 ATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTG
* *
12468361 ACTTAGGTATACGGAGTTCATTCCCA-GTCTA
129 GCTTAGGCATACGGAGTTCATTCCCATGTCTA
* * * * *
12468392 AGATCAGATCAGACCGAAGGTTGCTGCAGTAGGATCGACAGCATGCAG-GGGGGATTAGGTCGAT
1 AGATCAGATCAGACCGAGGGTTGCTGCAGCAGGATCGACAGCACGCAGAGGGGGATCAGGCCGAT
* * * * * * *
12468456 CCCTGGCTTGCTCATTCTGCCTCTCCGGTCGGCGGAGCGCCCGCACACTTGTTTCGTGGGTTGGC
66 CCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGC
12468521 TTAGGCATACGGAGTTCATTCCCA-GTCTA
131 TTAGGCATACGGAGTTCATTCCCATGTCTA
* * * *
12468550 AGATCAGATCGGGCCGAGGGTTGGGGCAGCAAGACCAGCAGCAGGATCGGCAGCACGCAGAGGGG
1 AGATCAGATCAGACCGAGGGTT----------G--CTGCAGCAGGATCGACAGCACGCAGAGGGG
** ** * * *
12468615 GATTGGGCCGATCCCCTACTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCACCCACACGCTTGTT
54 GATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTT
**
12468680 TTATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTA
119 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTA
12468721 AG
1 AG
12468723 CATACAAAGT
Statistics
Matches: 644, Mismatches: 134, Indels: 46
0.78 0.16 0.06
Matches are distributed among these distances:
157 7 0.01
158 234 0.36
159 268 0.42
160 16 0.02
168 1 0.00
170 24 0.04
171 94 0.15
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (160 bp):
AGATCAGATCAGACCGAGGGTTGCTGCAGCAGGATCGACAGCACGCAGAGGGGGATCAGGCCGAT
CCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGC
TTAGGCATACGGAGTTCATTCCCATGTCTA
Found at i:12468347 original size:317 final size:316
Alignment explanation
Indices: 12467757--12468551 Score: 1182
Period size: 317 Copynumber: 2.5 Consensus size: 316
12467747 CATCAAAAAT
* * * *
12467757 AGATCAAACCAGACCGAGGGTTGCTGCAGCAGGATCGACAGCACGTAGGGGGGGATATGGCCGAT
1 AGATCAGATCAGACCGAGGGTTGCTGCAGCAGGATCGACAGCATGTA-GGGGGGATA-GGTCGAT
* * *
12467822 CCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGC
64 CCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGTTCGTTTCGTGGGTTGGC
* *
12467887 TTAGGCATACGGAGTTCTTTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCAGGACC
129 TTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAGGGTTGTGGCAGCAGGACC
* * *
12467952 GGTAGCACACAGAAGGGGACCAGGCCGATCCTCGGCTTGTGCAATACGCCTCTCCGATCGGCTCA
194 GGCAGCACACAGAAGGGGACCAGGCCGATCCCCGGCTTGCGCAATACGCCTCTCCGATCGGCTCA
** *
12468017 GCGCCTGCATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTA
259 GCGCCCACATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
*
12468075 AGATCAGATCAGACCGAGGGTTGCTGCAACAGGATCGACAGCATGTAGGGGGGATCAGGTCGATC
1 AGATCAGATCAGACCGAGGGTTGCTGCAGCAGGATCGACAGCATGTAGGGGGGAT-AGGTCGATC
* * * *
12468140 CCCGGCTTGCGCATTCTGCCTGTCCGGCCAGCTAAGCACCCGCACGTTCATTTCGTGGGTTGGCT
65 CCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGTTCGTTTCGTGGGTTGGCT
* *
12468205 TAGGCATACGGACTTCATTCCATGTCTAAGCCCCAG-CTAGACTGAGGGTTGTGGCCGCAGGACC
130 TAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTC-AGACTGAGGGTTGTGGCAGCAGGACC
* * *
12468269 GGCAGCACACAGAAGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCA
194 GGCAGCACACAGAAGGGGACCAGGCCGATCCCCGGCTTGCGCAATACGCCTCTCCGATCGGCTCA
* *
12468334 GTGCCCACATGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTA
259 GCGCCCACATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * *
12468392 AGATCAGATCAGACCGAAGGTTGCTGCAGTAGGATCGACAGCATGCAGGGGGGATTAGGTCGATC
1 AGATCAGATCAGACCGAGGGTTGCTGCAGCAGGATCGACAGCATGTAGGGGGGA-TAGGTCGATC
* * * * * *
12468457 CCTGGCTTGCTCATTCTGCCTCTCCGGTCGGCGGAGCGCCCGCACACTT-GTTTCGTGGGTTGGC
65 CCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCAC-GTTCGTTTCGTGGGTTGGC
12468521 TTAGGCATACGGAGTTCATTCCCA-GTCTAAG
129 TTAGGCATACGGAGTTCATT-CCATGTCTAAG
12468552 ATCAGATCGG
Statistics
Matches: 430, Mismatches: 42, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
316 1 0.00
317 379 0.88
318 50 0.12
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (316 bp):
AGATCAGATCAGACCGAGGGTTGCTGCAGCAGGATCGACAGCATGTAGGGGGGATAGGTCGATCC
CCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGTTCGTTTCGTGGGTTGGCTT
AGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAGGGTTGTGGCAGCAGGACCGG
CAGCACACAGAAGGGGACCAGGCCGATCCCCGGCTTGCGCAATACGCCTCTCCGATCGGCTCAGC
GCCCACATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
Found at i:12469568 original size:159 final size:155
Alignment explanation
Indices: 12469088--12469749 Score: 515
Period size: 159 Copynumber: 4.2 Consensus size: 155
12469078 CCTAATCTAA
* * ** * *
12469088 GCATACAGAGTTTATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATCGGTA
1 GCATACGGAGTTCATT-CCA-TCTAAGCCCAG-CCAGACCGAGGGTTGTGGCAGCAGGATCGGCA
* * * * * * * *
12469153 GCACGCAGGGTGGATCGGGTCGATCCTCGACTTGCGTATTTTGCCT-TTCCGATCAACTGAGTGC
63 GCACGCAGGGGGGATCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTT-CGACCGACTGAGTAC
* * *
12469217 CTTGCATGCCCATTTCATGGGTTGGCTTAG
127 C-CGCACGCCCATTTCATGGGTTGACTTAG
* * * * **
12469247 TCATAAGGAGTTCATTCCATGTCTAAGCCACAGCCGGACCGATGGTTGTGGCAGTGGGATCGGCA
1 GCATACGGAGTTCATTCCA--TCTAAGCC-CAGCCAGACCGAGGGTTGTGGCAGCAGGATCGGCA
* * * * *
12469312 GCACACCGGGGGGATC-GGGCTGATCCCCGGCTTGTGCATTCTGCCTCTTCGACCGACTGAGTAC
63 GCACGCAGGGGGGATCAGGTC-GATCCTCGGCTTGCGCATTCTGCCTCTTCGACCGACTGAGTAC
* * *
12469376 CCGTACGCCCGTTTCATGGGTTGGCTTAG
127 CCGCACGCCCATTTCATGGGTTGACTTAG
* * * * * *
12469405 GCATAGGGAGTTCATTCCATACCTAAGCCCTAGCCAGATCGAGGGTTGTGGTAGCGGGACCGGTA
1 GCATACGGAGTTCATTCCAT--CTAAGCCC-AGCCAGACCGAGGGTTGTGGCAGCAGGATCGGCA
* * ** * * *
12469470 GCACGCAGAGGGGGACCAGGTCGATCCTCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGTGC
63 GCACGCAG-GGGGGATCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGACCGACTGAGTAC
* * *
12469535 CCGCACGCTCATTTCGTGGGTTGACTTAT
127 CCGCACGCCCATTTCATGGGTTGACTTAG
** * * * *
12469564 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGTAGCAGGATTGACA
1 GCATACGGAGTTCATT-CCA-TCTAAGCCCAG-CCAGACCGAGGGTTGTGGCAGCAGGATCGGCA
* * * * ** *
12469629 GCACGCAAGGGGGATCAGGCCGATCC-CTGGCTTGTGCATTCTGCCTC-TCTGGCCGGTTGAGCA
63 GCACGCAGGGGGGATCAGGTCGATCCTC-GGCTTGCGCATTCTGCCTCTTC-GACCGACTGAGTA
* * * * *
12469692 CCCGCACGCTCGTTCCGTAGGTT-AGCTTAG
126 CCCGCACGCCCATTTCATGGGTTGA-CTTAG
12469722 GCATACGGAGTTCATTCCACGTCTAAGC
1 GCATACGGAGTTCATTCCA--TCTAAGC
12469750 AAACGGAGTT
Statistics
Matches: 407, Mismatches: 80, Indels: 33
0.78 0.15 0.06
Matches are distributed among these distances:
156 1 0.00
157 8 0.02
158 177 0.43
159 209 0.51
160 11 0.03
161 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATCTAAGCCCAGCCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCA
CGCAGGGGGGATCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGACCGACTGAGTACCCGC
ACGCCCATTTCATGGGTTGACTTAG
Found at i:12469722 original size:317 final size:316
Alignment explanation
Indices: 12469121--12469740 Score: 712
Period size: 317 Copynumber: 2.0 Consensus size: 316
12469111 TAAGATCAGA
* * * *
12469121 CCAGACCGAGGGTTGTGACAGCAGGATCGGTAGCACGCAGGGTGGATCGGGTCGATCCTCGACTT
1 CCAGACCGAGGGTTGTGACAGCAGGACCGGTAGCACGCAGGGGGGACCAGGTCGATCCTCGACTT
* * * * * *
12469186 GCGTATTTTGCCTTTCCGATCAACTGAGTGCCTTGCATGCCCATTTCATGGGTTGGCTTAGTCAT
66 GCGCATTATGCCTTTCCGATCAACTCAGTGCCTCGCACGCCCATTTCATGGGTTGACTTAGTCAT
* * ** *
12469251 AAGGAGTTCATTCCATGTCTAAGCCACAGCCGGACCGATGGTTGTGGCAGTGGGATCGGCAGCAC
131 AAGGAGTTCATTCCATGTCTAAG-CACAGCCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCAC
** * * * *
12469316 ACCGGGGGGATCGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTTCGACCGACTGAGTACCCGTA
195 ACAAGGGGGATCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGACCGACTGAGCACCCGCA
* * * *
12469381 CGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATACCTAAGCCCTAG
260 CGCCCGTTCCATAGGTTAGCTTAGGCATACGGAGTTCATTCCATACCTAAGCCCTAG
* ** * *
12469438 CCAGATCGAGGGTTGTGGTAGCGGGACCGGTAGCACGCAGAGGGGGACCAGGTCGATCCTCGGCT
1 CCAGACCGAGGGTTGTGACAGCAGGACCGGTAGCACGCAG-GGGGGACCAGGTCGATCCTCGACT
* ** * *
12469503 TGCGCATTATGCCTCTT-CGGTCGGCTCAGTGCC-CGCACGCTCATTTCGTGGGTTGACTTA-TG
65 TGCGCATTATGCCT-TTCCGATCAACTCAGTGCCTCGCACGCCCATTTCATGGGTTGACTTAGT-
* * * *
12469565 CATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAGACCGAGGGTTGTGGTAGCAGGATTGAC
128 CATAAGGAGTTCATT-CCATGTCTAAGCA-CAG-CCAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * **
12469628 AGCACGCAAGGGGGATCAGGCCGATCCCTGGCTTGTGCATTCTGCCTC-TCTGGCCGGTTGAGCA
190 AGCACACAAGGGGGATCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTC-GACCGACTGAGCA
* *
12469692 CCCGCACGCTCGTTCCGTAGGTTAGCTTAGGCATACGGAGTTCATTCCA
254 CCCGCACGCCCGTTCCATAGGTTAGCTTAGGCATACGGAGTTCATTCCA
12469741 CGTCTAAGCA
Statistics
Matches: 250, Mismatches: 46, Indels: 14
0.81 0.15 0.05
Matches are distributed among these distances:
315 1 0.00
316 6 0.02
317 194 0.78
318 47 0.19
319 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.25
Consensus pattern (316 bp):
CCAGACCGAGGGTTGTGACAGCAGGACCGGTAGCACGCAGGGGGGACCAGGTCGATCCTCGACTT
GCGCATTATGCCTTTCCGATCAACTCAGTGCCTCGCACGCCCATTTCATGGGTTGACTTAGTCAT
AAGGAGTTCATTCCATGTCTAAGCACAGCCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACA
CAAGGGGGATCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGACCGACTGAGCACCCGCAC
GCCCGTTCCATAGGTTAGCTTAGGCATACGGAGTTCATTCCATACCTAAGCCCTAG
Found at i:12470955 original size:158 final size:157
Alignment explanation
Indices: 12470490--12470965 Score: 519
Period size: 158 Copynumber: 3.0 Consensus size: 157
12470480 GATCAAACTG
* * * * * *
12470490 GACCGAGGGTTGCGGCTGCAGGATCGACAGTACGCAGGGGGGACCGGGCCAATCCCCAGCTTGTG
1 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAAGGGGGACCGGGCC-ATCCCCGGCTTGCG
* * * * **
12470555 CATTCTGCCTCTCCGACCGACGGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
65 CATTCTGCCTCTCCGATCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAG
* ** *
12470620 AGTTCATTCCATGGGTAAGCCCCAGCCG-
130 AGTTCATTCCATGGCTAAGCATCAG-AGT
* * *
12470648 GACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGACCGGGCCAGTCCCCGACTTGC
1 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA-AGGGGGACCGGGCCA-TCCCCGGCTTGC
* * * * * * * * * *
12470713 GTATTATGCCTCTTC-AGTCGGCTCAGCACCCACACGCTCATTTCATGGGTTGACTTATGCATAC
64 GCATTCTGCCTCTCCGA-TCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
*
12470777 AGAGTTCATTCC-TAGTCTAAG-ATCAGAGT
128 AGAGTTCATTCCAT-GGCTAAGCATCAGAGT
* * *
12470806 AGACCGAGGGTTGTGGCAGCAAGATTGACAGCACGCAAGGGGGATCGGGCCGATCCCCGGCTTGC
1 -GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAAGGGGGACCGGGCC-ATCCCCGGCTTGC
* * *
12470871 GCATTCTACCTCTCCGATCGACTGAGCACCCGTATGCTCGTTTCGTGGGTTGGCTTAGGCATACA
64 GCATTCTGCCTCTCCGATCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACA
12470936 GAGTTCATTCCATGGCTAAGCATACAGAGT
129 GAGTTCATTCCATGGCTAAGCAT-CAGAGT
12470966 TCATACCCAG
Statistics
Matches: 257, Mismatches: 50, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
157 1 0.00
158 128 0.50
159 122 0.47
160 6 0.02
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.21
Consensus pattern (157 bp):
GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCATCCCCGGCTTGCGC
ATTCTGCCTCTCCGATCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGA
GTTCATTCCATGGCTAAGCATCAGAGT
Found at i:12471010 original size:26 final size:26
Alignment explanation
Indices: 12470929--12471021 Score: 80
Period size: 26 Copynumber: 3.6 Consensus size: 26
12470919 GTTGGCTTAG
* * *
12470929 GCATACAGAGTTCAT-TCCATGGCTAA
1 GCATACGGAGTTCATACCCA-GTCTAA
* ***
12470955 GCATACAGAGTTCATACCCAGTCGGG
1 GCATACGGAGTTCATACCCAGTCTAA
* *
12470981 GCATACGGAGTTGATCCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
*
12471007 GCATATGGAGTTCAT
1 GCATACGGAGTTCAT
12471022 TACTAGTCTA
Statistics
Matches: 53, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
26 50 0.94
27 3 0.06
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:12471308 original size:159 final size:159
Alignment explanation
Indices: 12471044--12471510 Score: 459
Period size: 158 Copynumber: 2.9 Consensus size: 159
12471034 ATCGGATCAG
* * * * *
12471044 ACCGAGGGTTGCAGTAGCAAGATC-GACAGCACGCAGGGTGGACCGGGCCGAT-CCCTGGCTTGT
1 ACCGAGGGTTGCAGTAGCAGGA-CGGACAGCACGTAGGGGGGATCGGGCCGATCCCCT-GCTTGC
* * * * * * *
12471107 GCATTCTGCCTCTCCGGTCGGCTAAGCGCCCACACGCCCGTTTCATGGGTTGGCTTATGCATAAG
64 GCATTCTGCCTCTTCGGTCGGCTGAGCGCACGCACGCTCGTTTCATGGGTTGACTTATGCATACG
*
12471172 GAGTTCATTCCATGTCTAAGCCCCAG-CCGA
129 GAGTTCATTCCATGTCTAAGCACCAGACCGA
** * *
12471202 ACCGAGGGTTGTGGTAGCGGGACCGGCAACA-CACAG-AGGGGGGCT-GGGCCGATCCCCTGCTT
1 ACCGAGGGTTGCAGTAGCAGGA-CGG--ACAGCAC-GTAGGGGGGATCGGGCCGATCCCCTGCTT
* * * *
12471264 GCGCATTATGCCTCTTCGGTCGGCTCGA-CGCTCGCACACTCGTTTCGTGGGTTGACTTATGCAT
62 GCGCATTCTGCCTCTTCGGTCGGCT-GAGCGCACGCACGCTCGTTTCATGGGTTGACTTATGCAT
* * * *
12471328 ACGAAGTTTATTCCCA-ATCTAAG-ATCAGACCGA
126 ACGGAGTTCATT-CCATGTCTAAGCACCAGACCGA
* **
12471361 ACTGAGGGTTGCAGTAGCAGGATTGACAGCACGTAGGGGGGATCGGGCCGATCCCC-GACTTGCG
1 ACCGAGGGTTGCAGTAGCAGGACGGACAGCACGTAGGGGGGATCGGGCCGATCCCCTG-CTTGCG
* * * * * * * *
12471425 CATTCTGTCTCTTCGATCGGTTGAGCACACGCACGCTCATTTTATGGGTTGAATTAGGCATACGG
65 CATTCTGCCTCTTCGGTCGGCTGAGCGCACGCACGCTCGTTTCATGGGTTGACTTATGCATACGG
12471490 AGTTCATTCCATGTCTAAGCA
130 AGTTCATTCCATGTCTAAGCA
12471511 TACGGAGTTC
Statistics
Matches: 248, Mismatches: 46, Indels: 29
0.77 0.14 0.09
Matches are distributed among these distances:
156 4 0.02
157 17 0.07
158 103 0.42
159 103 0.42
160 17 0.07
161 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
ACCGAGGGTTGCAGTAGCAGGACGGACAGCACGTAGGGGGGATCGGGCCGATCCCCTGCTTGCGC
ATTCTGCCTCTTCGGTCGGCTGAGCGCACGCACGCTCGTTTCATGGGTTGACTTATGCATACGGA
GTTCATTCCATGTCTAAGCACCAGACCGA
Found at i:12471475 original size:553 final size:553
Alignment explanation
Indices: 12470427--12471530 Score: 1461
Period size: 553 Copynumber: 2.0 Consensus size: 553
12470417 GGTTGATTTA
* *
12470427 GGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCGAAGATCAAACTGGA
1 GGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTACTAGTCGAAGATCAAACTAGA
* * *
12470492 CCGAGGGTTGCGGCTGCAGGATCGACAGTACGCAGGGGGGACCGGGCCAATCCCCAGCTTGTGCA
66 CCGAGGGTTGCAGCTGCAAGATCGACAGCACGCAGGGGGGACCGGGCCAATCCCCAGCTTGTGCA
* * * *
12470557 TTCTGCCTCTCCGACCGACGGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAG
131 TTCTGCCTCTCCGACCGACGAAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAG
* * * * *
12470622 TTCATTCCATGGGTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAG
196 TTCATTCCATGGCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCGGGACCGGCAACACACAGAG
* *
12470687 GGGGACCGGGCCAGTCCCCGACTTGCGTATTATGCCTCTTCAGTCGGCTCAGCACCCACACGCTC
261 GGGGACCGGGCCAGTCCCCGACTTGCGCATTATGCCTCTTCAGTCGGCTCAGCACCCACACACTC
* *
12470752 ATTTCATGGGTTGACTTATGCATACAGAGTTCATTCCTAGTCTAAGATCAGAGTAGACCGAGGGT
326 ATTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCAATCTAAGATCAGAGTAGACCGAGGGT
** *
12470817 TGTGGCAGCAAGATTGACAGCACGCAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCT
391 TGCAGCAGCAAGATTGACAGCACGCAAGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTACCT
* * * * * **
12470882 CTCCGATCGACTGAGCACCCGTATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCC
456 CTCCGATCGACTGAGCACACGCACGCTCATTTCATGGGTTGAATTAGGCATACAGAGTTCATTCC
12470947 ATGGCTAAGCATACAGAGTTCATACCCAGTCGG
521 ATGGCTAAGCATACAGAGTTCATACCCAGTCGG
* * * * **
12470980 GGCATACGGAGTTGATCCCCAGTCTAAGCATATGGAGTTCATTACTAGTCTAAGATCGGA-TCAG
1 GGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTACTAGTCGAAGATCAAACT-AG
* * **
12471044 ACCGAGGGTTGCAG-TAGCAAGATCGACAGCACGCAGGGTGGACCGGGCCGATCCCTGGCTTGTG
65 ACCGAGGGTTGCAGCT-GCAAGATCGACAGCACGCAGGGGGGACCGGGCCAATCCCCAGCTTGTG
** * * *
12471108 CATTCTGCCTCTCCGGTCGGCTAAGCGCCCACACGCCCGTTTCATGGGTTGGCTTATGCATAAGG
129 CATTCTGCCTCTCCGACCGACGAAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAAGG
* *
12471173 AGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGTAGCGGGACCGGCAACACACAG
194 AGTTCATTCCATGGCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCGGGACCGGCAACACACAG
* * * *
12471238 AGGGGGGCTGGGCC-GATCCCCTG-CTTGCGCATTATGCCTCTTCGGTCGGCTC-G-ACGCTCGC
259 AGGGGGACCGGGCCAG-TCCCC-GACTTGCGCATTATGCCTCTTCAGTCGGCTCAGCAC-C-CAC
* * *
12471299 ACACTCGTTTCGTGGGTTGACTTATGCATAC-GAAGTTTATTCCCAATCTAAGATCAGACCG-A-
320 ACACTCATTTCATGGGTTGACTTATGCATACAG-AGTTCATTCCCAATCTAAGATCAGA--GTAG
* * * * *
12471361 ACTGAGGGTTGCAGTAGCAGGATTGACAGCACGTAGGGGGGATCGGGCCGATCCCCGACTTGCGC
382 ACCGAGGGTTGCAGCAGCAAGATTGACAGCACGCAAGGGGGATCGGGCCGATCCCCGACTTGCGC
** * ** * *
12471426 ATTCTGTCTCTTCGATCGGTTGAGCACACGCACGCTCATTTTATGGGTTGAATTAGGCATACGGA
447 ATTCTACCTCTCCGATCGACTGAGCACACGCACGCTCATTTCATGGGTTGAATTAGGCATACAGA
* * *
12471491 GTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTC
512 GTTCATTCCATGGCTAAGCATACAGAGTTCATACCCAGTC
12471531 TAAGATTTTG
Statistics
Matches: 475, Mismatches: 67, Indels: 18
0.85 0.12 0.03
Matches are distributed among these distances:
551 2 0.00
552 6 0.01
553 464 0.98
554 2 0.00
555 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (553 bp):
GGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTACTAGTCGAAGATCAAACTAGA
CCGAGGGTTGCAGCTGCAAGATCGACAGCACGCAGGGGGGACCGGGCCAATCCCCAGCTTGTGCA
TTCTGCCTCTCCGACCGACGAAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAG
TTCATTCCATGGCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCGGGACCGGCAACACACAGAG
GGGGACCGGGCCAGTCCCCGACTTGCGCATTATGCCTCTTCAGTCGGCTCAGCACCCACACACTC
ATTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCAATCTAAGATCAGAGTAGACCGAGGGT
TGCAGCAGCAAGATTGACAGCACGCAAGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTACCT
CTCCGATCGACTGAGCACACGCACGCTCATTTCATGGGTTGAATTAGGCATACAGAGTTCATTCC
ATGGCTAAGCATACAGAGTTCATACCCAGTCGG
Found at i:12471476 original size:158 final size:157
Alignment explanation
Indices: 12471044--12471510 Score: 444
Period size: 159 Copynumber: 2.9 Consensus size: 157
12471034 ATCGGATCAG
* * * * *
12471044 ACCGAGGGTTGCAGTAGCAAGATCGACAGCACGCAGGGTGGACCGGGCCGATCCCTGGCTTGTGC
1 ACCGAGGGTTGCAGTAGCAGGATCGACAGCACG-AGGGGGGATCGGGCCGATCCC-CGCTTGCGC
* * * * * * * *
12471109 ATTCTGCCTCTCCGGTCGGCTAAGCGCCCACACGCCCGTTTCATGGGTTGGCTTATGCATAAGGA
64 ATTCTGCCTCTTCGGTCGGTTGAGCGCACGCACGCTCGTTTCATGGGTTGACTTATGCATACGGA
* *
12471174 GTTCATT-CCATGTCTAAGCCCCAGCCGA
129 GTTCATTCCCATATCTAAGCACCAGCCGA
** * * *
12471202 ACCGAGGGTTGTGGTAGCGGGACCGGCAACA-CACAGAGGGGGGCT-GGGCCGATCCCCTGCTTG
1 ACCGAGGGTTGCAGTAGCAGGATC-G--ACAGCAC-GAGGGGGGATCGGGCCGATCCCC-GCTTG
* * * * *
12471265 CGCATTATGCCTCTTCGGTCGGCTCGA-CGCTCGCACACTCGTTTCGTGGGTTGACTTATGCATA
61 CGCATTCTGCCTCTTCGGTCGG-TTGAGCGCACGCACGCTCGTTTCATGGGTTGACTTATGCATA
* * *
12471329 CGAAGTTTATTCCCA-ATCTAAG-ATCAGACCGA
125 CGGAGTTCATTCCCATATCTAAGCACCAG-CCGA
* *
12471361 ACTGAGGGTTGCAGTAGCAGGATTGACAGCACGTAGGGGGGATCGGGCCGATCCCCGACTTGCGC
1 ACCGAGGGTTGCAGTAGCAGGATCGACAGCACG-AGGGGGGATCGGGCCGATCCCCG-CTTGCGC
* * * * * * *
12471426 ATTCTGTCTCTTCGATCGGTTGAGCACACGCACGCTCATTTTATGGGTTGAATTAGGCATACGGA
64 ATTCTGCCTCTTCGGTCGGTTGAGCGCACGCACGCTCGTTTCATGGGTTGACTTATGCATACGGA
*
12471491 GTTCATT-CCATGTCTAAGCA
129 GTTCATTCCCATATCTAAGCA
12471511 TACGGAGTTC
Statistics
Matches: 245, Mismatches: 49, Indels: 29
0.76 0.15 0.09
Matches are distributed among these distances:
156 4 0.02
157 18 0.07
158 102 0.42
159 104 0.42
160 13 0.05
161 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
ACCGAGGGTTGCAGTAGCAGGATCGACAGCACGAGGGGGGATCGGGCCGATCCCCGCTTGCGCAT
TCTGCCTCTTCGGTCGGTTGAGCGCACGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGT
TCATTCCCATATCTAAGCACCAGCCGA
Found at i:12471518 original size:26 final size:26
Alignment explanation
Indices: 12471482--12471534 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12471472 GTTGAATTAG
12471482 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12471508 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12471534 G
1 G
12471535 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12472522 original size:159 final size:158
Alignment explanation
Indices: 12472286--12472730 Score: 468
Period size: 159 Copynumber: 2.8 Consensus size: 158
12472276 TACGGTAGCG
** * * * * * *
12472286 AGACCGACAGCACTTAGGGGGGATCGAGTCGATTCCGGCTTGCGCATTCTGCCTCTCCAGCCGGC
1 AGACCGACAGCACACAAGGGGGATCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGC
* * * *
12472351 TGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
66 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCA
* **** *
12472416 CCAGCT-GGACCGAGGGTTGTGGCAGCG
131 CCAGATCGGACCGAGGGTTACAACAGCA
* * ** *
12472443 GGACCGGCAGCATGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCCG
1 AGACCGACAGCACACA-AGGGGGATCGGGCCGATCC-CGGCTTGCGCATTCTGCCTCTTCGGCCG
* * * ***
12472508 ACTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCA-GTCTAA
64 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAA
* * *
12472572 G-ATCAGATCGGATCGAGGGTTACAATAGCA
128 GCACCAGATCGGACCGAGGGTTACAACAGCA
* * **
12472602 AGATCGACAGCACACAAGGGGGA-CTGGGCCGATCCCCGGCTTGTGCATTCTG-CTCTTCGATCG
1 AGACCGACAGCACACAAGGGGGATC-GGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTTCGGCCG
* *
12472665 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATCCCATGTCTAAG
64 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
12472730 C
129 C
12472731 GTACGGAGTT
Statistics
Matches: 232, Mismatches: 48, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
156 3 0.01
157 74 0.32
158 48 0.21
159 104 0.45
160 3 0.01
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.22
Consensus pattern (158 bp):
AGACCGACAGCACACAAGGGGGATCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGC
TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCA
CCAGATCGGACCGAGGGTTACAACAGCA
Found at i:12473118 original size:25 final size:26
Alignment explanation
Indices: 12473071--12473122 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
12473061 GTTGACTTAG
*
12473071 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGGTCATCCCCAGTCTAA
* *
12473097 GCATAC-GAGGTCATTCCTAGTCTAA
1 GCATACGGAGGTCATCCCCAGTCTAA
12473122 G
1 G
12473123 ATCAAATCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGGTCATCCCCAGTCTAA
Found at i:12473450 original size:26 final size:26
Alignment explanation
Indices: 12473414--12473466 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12473404 GTTGGCCTAG
12473414 GCATACGGAGTCCATT-CCATGTCTAA
1 GCATACGGAGTCCATTCCCA-GTCTAA
*
12473440 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
12473466 G
1 G
12473467 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:12474677 original size:26 final size:26
Alignment explanation
Indices: 12474648--12474700 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12474638 GTTGGCTTAG
12474648 GCATACAGAGTTCAAT-CCATGTCTAA
1 GCATACAGAGTTCAATCCCAT-TCTAA
* *
12474674 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCAATCCCATTCTAA
12474700 G
1 G
12474701 ATCAAACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCATTCTAA
Found at i:12475368 original size:158 final size:158
Alignment explanation
Indices: 12475041--12475543 Score: 389
Period size: 158 Copynumber: 3.2 Consensus size: 158
12475031 CCCAGTCTAA
* * * * * *
12475041 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCGGATCGAACC-AAGGGTTGCGACAGCAGGATCA
1 GCATACGGAGTTCATT-CCATGTCTAAGCATCAGATCGGACCGAA-GGTTGGGGCAGTAGGATCA
* ** ** * * * * *
12475103 ACAGCATGCAGGGGGGACCAGG-TCGATCCCTGGCTTGTGAATTCTGCCTCTCCGACTGGCTGAG
64 ACAGCACGCAGGGGGGACCAGGCT-GATCCCCAGCTTACGCATTATGCC-CTCCGACCGACTCAG
* * * * ** *
12475167 CGCCCGCATGCCCATTTCGTGGGTTGGCCTAC
127 CACCCCCACGCTCGCTTCGTGGGTTGGCTTAC
* * * * *
12475199 GCATAGGGAGTTCATTCCATGTCTAAGCCTCAG-TTGGACCGAAGGTTGTGGCAGT-GAGATCGA
1 GCATACGGAGTTCATTCCATGTCTAAGCATCAGATCGGACCGAAGGTTGGGGCAGTAG-GATCAA
* * *
12475262 CAGCACGCAGAGGGGGACC-GGACTGATCCCCAGCTTACGCATTATTCCTCTTCGATCGACTCAG
65 CAGCACGCAG-GGGGGACCAGG-CTGATCCCCAGCTTACGCATTATGCC-CTCCGACCGACTCAG
* * * *
12475326 CACTCGCACGCTCG-TTCCGTGGGTTGACTTAT
127 CACCCCCACGCTCGCTT-CGTGGGTTGGCTTAC
** * *
12475358 GCATA-GGAGTTCATTCCCA-GTCTAAG-ATTGGATCGGATCGATGGTTGGGGCAGTAGGATCAA
1 GCATACGGAGTTCATT-CCATGTCTAAGCATCAGATCGGACCGAAGGTTGGGGCAGTAGGATCAA
* * * * * * ** * *
12475420 TAGTACGCAGGGGGGACCAGGCTGATCCTCGGCTTGCGCATTCTGCCCTCCGACCGGTTGAGCGC
65 CAGCACGCAGGGGGGACCAGGCTGATCCCCAGCTTACGCATTATGCCCTCCGACCGACTCAGCAC
*
12475485 CCCCACGCTCGCTTCGTGGGTTGGCTTAG
130 CCCCACGCTCGCTTCGTGGGTTGGCTTAC
12475514 GCATACGGAGTTCATTCCATGTCTAAGCAT
1 GCATACGGAGTTCATTCCATGTCTAAGCAT
12475544 ACGGAGTTCA
Statistics
Matches: 273, Mismatches: 56, Indels: 32
0.76 0.16 0.09
Matches are distributed among these distances:
156 42 0.15
157 54 0.20
158 105 0.38
159 71 0.26
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCATCAGATCGGACCGAAGGTTGGGGCAGTAGGATCAAC
AGCACGCAGGGGGGACCAGGCTGATCCCCAGCTTACGCATTATGCCCTCCGACCGACTCAGCACC
CCCACGCTCGCTTCGTGGGTTGGCTTAC
Found at i:12475550 original size:26 final size:26
Alignment explanation
Indices: 12475514--12475566 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12475504 GTTGGCTTAG
12475514 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12475540 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12475566 G
1 G
12475567 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12476492 original size:19 final size:19
Alignment explanation
Indices: 12476465--12476504 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
12476455 GAGGGTTGTG
* *
12476465 GCAGCGGGACCGGTAACAC
1 GCAGAGGGACCGGCAACAC
12476484 GCAGAGGGACCGGCAACAC
1 GCAGAGGGACCGGCAACAC
12476503 GC
1 GC
12476505 CCGCACGCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.33, G:0.38, T:0.03
Consensus pattern (19 bp):
GCAGAGGGACCGGCAACAC
Found at i:12476570 original size:26 final size:26
Alignment explanation
Indices: 12476534--12476586 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12476524 GTTGACTTAG
*
12476534 GCATACGGAGTTCATCCCTAGTTTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
12476560 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
12476586 G
1 G
12476587 GTCGGGCCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:12483020 original size:26 final size:26
Alignment explanation
Indices: 12482984--12483036 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12482974 GTTGGCTTAG
12482984 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12483010 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12483036 G
1 G
12483037 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12483223 original size:26 final size:26
Alignment explanation
Indices: 12483193--12483245 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12483183 GTTGACTTAG
*
12483193 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGGTCATTCC-CAGTCTAA
12483219 GCATACGGAGGTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
12483245 G
1 G
12483246 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:12484308 original size:25 final size:26
Alignment explanation
Indices: 12484272--12484321 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12484262 TGACTTAGGG
12484272 ATACGAAGTTCA-TCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
12484297 ATACAGAA-TTCATTCCCAGTCTAAG
1 ATAC-GAAGTTCATTCCCAGTCTAAG
12484322 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.26
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:12485079 original size:26 final size:26
Alignment explanation
Indices: 12485050--12485102 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12485040 GTTGACTTAG
12485050 GCATACGAAGTTCA-TCCTCAGTCTAA
1 GCATACGAAGTTCATTCC-CAGTCTAA
*
12485076 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12485102 G
1 G
12485103 ATCAGACAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12486469 original size:26 final size:26
Alignment explanation
Indices: 12486433--12486483 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12486423 TGGCTTAGGT
12486433 ATACGGAGTTCATT-CCAAGTCTAAGC
1 ATACGGAGTTCATTCCCAA-TCTAAGC
12486459 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
12486484 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGC
Found at i:12486656 original size:26 final size:26
Alignment explanation
Indices: 12486627--12486679 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12486617 GCTGACTGAG
*
12486627 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
*
12486653 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
12486679 G
1 G
12486680 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:12487361 original size:26 final size:26
Alignment explanation
Indices: 12487331--12487380 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
12487321 TTCATTTAGG
12487331 CATACGGAGTTCATCCCCAGTCTACA
1 CATACGGAGTTCATCCCCAGTCTACA
*
12487357 CATACGGAGTTCATTCCCAGTCTA
1 CATACGGAGTTCATCCCCAGTCTA
12487381 AGATCGAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTACA
Found at i:12487651 original size:159 final size:159
Alignment explanation
Indices: 12487357--12487859 Score: 410
Period size: 159 Copynumber: 3.2 Consensus size: 159
12487347 CCAGTCTACA
** * * * * * *
12487357 CATACGGAGTTCATTCCCA-GTCTAAGATCGAACTGGACCTAGGGTTGCGGTAGTAGAATCGACA
1 CATACGGAGTTCATT-CCATGTCTAAGCCCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * * * * *
12487421 GCACACAGGGGGGATC--GGACCGATCCTCGGCTTACGCATTCTACCTGTCC-GACAGGCTGAGC
65 GCACGCAGGGGGGATCTAGG-TCGATCCCCGGCTTGCGCATTATGCCTCTCCAG-CCGACTCAAC
* *
12487483 GCCCACACGCCCGTTTCATGGGTTGGCTTAGG
128 GCCCGCACGCCCGTTTTATGGGTTGGCTTAGG
* * * * * **
12487515 CATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGTAGC-GCGATCGGTA
1 CATACGGAGTTCATTCCATGTCTAAGCCCAAACCGGACCGAGGGTTGCGGCAGCAG-GATCGACA
* * * * ** *
12487579 GCACGTAGATGGGGATC-GGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCAGTTGGCTCAACG
65 GCACGCAG-GGGGGATCTAGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCAGCCGACTCAACG
*
12487643 CCCGCACGCTCC-TTTTATGGGTTGACTTAGG
129 CCCGCACGC-CCGTTTTATGGGTTGGCTTAGG
* ** * *
12487674 CATACAGAGTTCATTCTCA-GTCTAAGATCAAATCGGACCGAGGGTTGCGGCAGCAGGATTGACA
1 CATACGGAGTTCATTC-CATGTCTAAGCCCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * *
12487738 GCACGCAGGGGGGGTCTAGGTCGATCCCCGGCTTGTGCATTCTGCGTCTCCGGCCGACTGAGCGT
65 GCACGCAGGGGGGATCTAGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCAGCCGACTCAACGC
* * *
12487803 CCGCACACTCGTTTTGTGGGTTGGCTTAGG
130 CCGCACGCCCGTTTTATGGGTTGGCTTAGG
*
12487833 CATACGGAGTTCATTCAATGTCTAAGC
1 CATACGGAGTTCATTCCATGTCTAAGC
12487860 ATATGAGTTC
Statistics
Matches: 273, Mismatches: 61, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
157 4 0.01
158 60 0.22
159 201 0.74
160 8 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
CATACGGAGTTCATTCCATGTCTAAGCCCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAGGGGGGATCTAGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCAGCCGACTCAACGCC
CGCACGCCCGTTTTATGGGTTGGCTTAGG
Found at i:12488247 original size:171 final size:170
Alignment explanation
Indices: 12487864--12488248 Score: 388
Period size: 172 Copynumber: 2.2 Consensus size: 170
12487854 CTAAGCATAT
** * *
12487864 GAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTACGACAGCAGGACCAGCAGCAGTAT
1 GAGTTCATT-CCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGACCAGCAGCAGGAT
* *
12487929 CGACAGCACGCAGGGGGCACCGGGCCGATCCCTGCTTTTGCACATTTTGCCTTTCCAGCCGGCTG
65 CGACAGCACGCAGGGGGCACCGGGCCGATCCCTGC-TTTGCACATTATGCCTTTCCAGCCGGCTC
* * *
12487994 AGCCCCGCACGCTCAATTCATGGGTTTGGCCTTAGGCATACA
129 AGCCCCACACACTCAATTCATGGGTTTGGACTTAGGCATACA
* ** * * * **
12488036 GAGTTCATACCATGTCTAAGCCCCAG-TCGGATTGAGGGTTGTGGTAGCAGGACC-GACAGCAGG
1 GAGTTCATTCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGCGACAGCAGGACCAG-CAGCAGG
* * * *
12488099 ATCGACAGCACGCAGAGGGGGACCGGGCCGAT-CTTCGAC-TTGCGCATTATGCCTCTT-CGGCC
63 ATCGACAGCACGCAG-GGGGCACCGGGCCGATCCCT-G-CTTTGCACATTATGCCT-TTCCAGCC
* * * * *
12488161 GGCTCAGTGCCTACACACTCATTTCGTGGG-TT-GACTTATGCATACA
124 GGCTCAG-CCCCACACACTCAATTCATGGGTTTGGACTTAGGCATACA
12488207 GAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGC
1 GAGTTCATTCC-AGTCTAAGATCAGACCGGACTGAGGGTTGC
12488249 AGCAGTACGA
Statistics
Matches: 171, Mismatches: 32, Indels: 21
0.76 0.14 0.09
Matches are distributed among these distances:
170 3 0.02
171 46 0.27
172 84 0.49
173 37 0.22
174 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (170 bp):
GAGTTCATTCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGACCAGCAGCAGGATC
GACAGCACGCAGGGGGCACCGGGCCGATCCCTGCTTTGCACATTATGCCTTTCCAGCCGGCTCAG
CCCCACACACTCAATTCATGGGTTTGGACTTAGGCATACA
Found at i:12488875 original size:26 final size:26
Alignment explanation
Indices: 12488822--12488878 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
12488812 ACTCTTTCTA
* **
12488822 AAAAATTTTAAAAAATCTCGAACCAT
1 AAAAAGTTTAAAAAATCTCGAAAAAT
* *
12488848 AAAAAGTTTCAAAAATCTTGAAAAAT
1 AAAAAGTTTAAAAAATCTCGAAAAAT
12488874 AAAAA
1 AAAAA
12488879 ACAGGTTTGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.60, C:0.11, G:0.05, T:0.25
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCTCGAAAAAT
Found at i:12489109 original size:26 final size:26
Alignment explanation
Indices: 12489080--12489132 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12489070 GTTGACTTAG
*
12489080 GCATATGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
12489106 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
12489132 G
1 G
12489133 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:12489630 original size:26 final size:26
Alignment explanation
Indices: 12489581--12489633 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12489571 GTTGGCTTAG
*
12489581 GCATACGGAGTTGAATCCATGTCTAA
1 GCATACGGAGTTCAATCCATGTCTAA
*
12489607 GCATACGGAGTTCATTCC-TAGTCTAA
1 GCATACGGAGTTCAATCCAT-GTCTAA
12489633 G
1 G
12489634 ATTAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCATGTCTAA
Found at i:12489993 original size:26 final size:26
Alignment explanation
Indices: 12489963--12490013 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12489953 TTGGCTTCAG
12489963 CATACAGAGTTCATCCCCAGTCTAAA
1 CATACAGAGTTCATCCCCAGTCTAAA
*
12489989 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATCCCCAGTCTAA
12490014 GATCGAACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAA
Found at i:12490294 original size:159 final size:160
Alignment explanation
Indices: 12490112--12490492 Score: 394
Period size: 159 Copynumber: 2.4 Consensus size: 160
12490102 TGGCCAGCTG
* * *
12490112 AGTGCCCGCACG-TCCGTTTCATGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCC
1 AGTGCCCGCACGCT-CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAC
* * * ** *
12490176 CAG-CCAGA-TCGAGGGTTGTGGCAACGGGACTGACAGCACGTAGAGGGGGACCAGGCCGATCCT
65 CAGACCAGACT-GAGGGTTATGGCAACAGGACTAACAGCACACAGAGGGGGACCAGGCCGATCCC
* * *
12490239 CAGCTTGCGTATTTTACCTCTTCGGTCGGCTC
129 CAGCTTGCGCATTTTACCTCTCCAGTCGGCTC
* * * * * * * *
12490271 AGTGCCCGCACGCTAGTTTCATGGGTTGACTTATGCATATGAATTTCATTCCCA-GTCTAA-AAT
1 AGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCAC
** * * * * **
12490334 CAGACCAGACTGAGGGTTATGGCAGTAGGATTAACAGCACACAGGGGGGGATCGGGGTGATCCCC
65 CAGACCAGACTGAGGGTTATGGCAACAGGACTAACAGCACACAGAGGGGGACCAGGCCGATCCCC
* * *
12490399 GGCTTGCGCATTTTGCCTCTCCAGTCGGCTG
130 AGCTTGCGCATTTTACCTCTCCAGTCGGCTC
* * *
12490430 AGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 AGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
12490493 TACGGAGTTC
Statistics
Matches: 176, Mismatches: 40, Indels: 11
0.78 0.18 0.05
Matches are distributed among these distances:
158 6 0.03
159 164 0.93
160 6 0.03
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (160 bp):
AGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACC
AGACCAGACTGAGGGTTATGGCAACAGGACTAACAGCACACAGAGGGGGACCAGGCCGATCCCCA
GCTTGCGCATTTTACCTCTCCAGTCGGCTC
Found at i:12490493 original size:26 final size:26
Alignment explanation
Indices: 12490464--12490516 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12490454 GTTGGCTTAG
12490464 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12490490 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12490516 G
1 G
12490517 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12492525 original size:316 final size:316
Alignment explanation
Indices: 12491701--12492533 Score: 899
Period size: 320 Copynumber: 2.6 Consensus size: 316
12491691 CCATGTCTAA
* * * * * *
12491701 GCATACGGAGTTCATTCCCAGT-TAAGATCAGACCGGATCGAAGGTTGCGACAGTAGGACCTGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGGCAGCAGGACCAG-A
* * * * ***
12491765 GCAGGATCGACAGCA-GATAAGGG-GGATCAGGCCGATCCTCGACTTGTGCATTCTGCCTCTCCG
65 ACAGGATC-ACAGCACG---AGGGCAGACCGGGCCGATCCTCGACTTACACATTCTGCCTCTCCG
* *
12491828 ACCGGTTGGGCACCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
126 ACCGGTTGAGCGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTC
* * *
12491893 TAAGCCCTAGCGGATCGAGTGTTGTGGCAGCAGGACCGACAGCACATAGAGAGGGACCGGGCCAA
190 TAAGCCCTAGCGGATCGAGGGTGGTGGCAGCAGGACCGACAGCACATAGAGAGGGACCGAGCCAA
*
12491958 TCCCCAGCGTGCTCATTATGCCTCCCCGATCGGCTCAGAGTCCATTTCGTGGGTTGACTTAG
255 TCCCCAGCGTGCTCATTATGCCTCCCCGATCGGCTCAGAGTCCATTTCGTGGGTTGACATAG
* * * *
12492020 GCATACGGAGTTCATTTCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGGCAGCAGGACCAG-A
* *
12492085 ACAGGATCGACAGCACGCAGGGCAGATCGGGCCGATCCTCGACTTACACATTCTTCCTCTCCGAC
65 ACAGGATC-ACAGCACG-AGGGCAGACCGGGCCGATCCTCGACTTACACATTCTGCCTCTCCGAC
* *
12492150 CGGTTGAGCGCCCGCATGCCCATTTCATGGGTTGGCTTAGGTATAGGAAGTTCATTCCATGTCTA
128 CGGTTGAGCGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGG-AGTTCATTCCATGTCTA
* * * *
12492215 AGCCCTAGCCGGA-CTGAGGGTGGTGGCAGCGGGACCGGCAGCACGTAGAGGGGGACCGAGCCAA
192 AGCCCTAG-CGGATC-GAGGGTGGTGGCAGCAGGACCGACAGCACATAGAGAGGGACCGAGCCAA
* * *
12492279 TCCTC-GACTTG-TGCATTATGCCTCTCCGATCGGCTCAGAGCCCGTACGCTCATTTCGTGGGTT
255 TCCCCAG-CGTGCT-CATTATGCCTCCCCGATCGGCTCAGA----GT---C-CATTTCGTGGGTT
12492342 GACATAG
310 GACATAG
* * * *
12492349 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGGTAGTATGATC-G-A
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGGCAGCAGGACCAGAA
* * * * * * *
12492412 TA-G-T-A-TGCA-G-GGG-TGACCGGGTCGATCC-CTGACTTACGCA-TCTGCCTCTCCAATCG
66 CAGGATCACAGCACGAGGGCAGACCGGGCCGATCCTC-GACTTACACATTCTGCCTCTCCGACCG
* * *
12492468 GTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
130 GTTGAGCGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAG
12492533 C
194 C
12492534 ATACGGAGTT
Statistics
Matches: 445, Mismatches: 51, Indels: 39
0.83 0.10 0.07
Matches are distributed among these distances:
316 72 0.16
317 23 0.05
318 3 0.01
319 27 0.06
320 157 0.35
321 82 0.18
322 1 0.00
324 1 0.00
325 3 0.01
326 2 0.00
328 2 0.00
329 72 0.16
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (316 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGGCAGCAGGACCAGAA
CAGGATCACAGCACGAGGGCAGACCGGGCCGATCCTCGACTTACACATTCTGCCTCTCCGACCGG
TTGAGCGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCC
CTAGCGGATCGAGGGTGGTGGCAGCAGGACCGACAGCACATAGAGAGGGACCGAGCCAATCCCCA
GCGTGCTCATTATGCCTCCCCGATCGGCTCAGAGTCCATTTCGTGGGTTGACATAG
Found at i:12492556 original size:26 final size:26
Alignment explanation
Indices: 12492506--12492558 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12492496 GTTGGCTTAG
*
12492506 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
12492532 GCATACGGAGTTCGTTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
12492558 G
1 G
12492559 ATAGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:12493214 original size:158 final size:159
Alignment explanation
Indices: 12493052--12493414 Score: 394
Period size: 158 Copynumber: 2.3 Consensus size: 159
12493042 CGCATGCCAG
* *
12493052 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGAACCAAGGGT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCAAGGGT
** * * * * *
12493116 TATGGCAATGGGACC-AGTAGCATACAGAGGGGATCGGGTC-GATCCCTTGCTTGCGCATTATGC
66 TATGGCAAAAGGACCGA-CAGCACACAGAGGGGA-CGGGACTGATCCCTGGCTTGCGCATTATAC
* ** *
12493179 CTCTTCGGTTGGCTCAACACCCGCACGCTTA
129 CTCTCCGACTGGCTCAACACCCGCACGCTCA
* * * * * * *
12493210 TTTCATGGGTTGACTTATGCATATGGAGTTCATTCCCA-GTCTAAG-ATCGGACCGGACCGAGGG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGAACCAAGGG
* * * * * *
12493273 TTGTGGCAAAATGATCGACAGCACGCAGAGGGGACTGGACTGATCCCTGGCTTGCGCATTCTACC
65 TTATGGCAAAAGGACCGACAGCACACAGAGGGGACGGGACTGATCCCTGGCTTGCGCATTATACC
* * * *
12493338 TCTCCGACTGGCTGAGCGCCCGCATGCTCA
130 TCTCCGACTGGCTCAACACCCGCACGCTCA
12493368 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
12493415 TACAAATTTC
Statistics
Matches: 167, Mismatches: 32, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
157 9 0.05
158 153 0.92
159 5 0.03
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (159 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCAAGGGT
TATGGCAAAAGGACCGACAGCACACAGAGGGGACGGGACTGATCCCTGGCTTGCGCATTATACCT
CTCCGACTGGCTCAACACCCGCACGCTCA
Found at i:12500028 original size:27 final size:27
Alignment explanation
Indices: 12499998--12500054 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
12499988 ATGGGTTGAG
* *
12499998 TAAGGCATACAGAGTTCATTCCCAGTT
1 TAAGGCATACAAAGTTCATTCCCAGTC
*
12500025 TAA-GCATACAAAGTTCATTTCCAGTC
1 TAAGGCATACAAAGTTCATTCCCAGTC
12500051 TAAG
1 TAAG
12500055 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (27 bp):
TAAGGCATACAAAGTTCATTCCCAGTC
Found at i:12500507 original size:26 final size:26
Alignment explanation
Indices: 12500471--12500523 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12500461 GTTGGCTTAG
12500471 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
12500497 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12500523 G
1 G
12500524 ATTAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12501227 original size:26 final size:26
Alignment explanation
Indices: 12501197--12501249 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12501187 GTTGGCTTAG
*
12501197 GCATACGGACTTCATT-CCATGTCTAA
1 GCATACAGACTTCATTCCCA-GTCTAA
*
12501223 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
12501249 G
1 G
12501250 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAGTCTAA
Found at i:12501955 original size:26 final size:26
Alignment explanation
Indices: 12501919--12501971 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12501909 GTTGACTTAG
*
12501919 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
12501945 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12501971 G
1 G
12501972 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12502139 original size:26 final size:26
Alignment explanation
Indices: 12502103--12502155 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12502093 GTTGGCTTAG
*
12502103 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12502129 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12502155 G
1 G
12502156 ATTAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12502979 original size:159 final size:157
Alignment explanation
Indices: 12502493--12502988 Score: 475
Period size: 158 Copynumber: 3.1 Consensus size: 157
12502483 CTAAGGATAA
* *
12502493 GGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTATGGGCAGCAGGATCGACAGCACG
1 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGT-GGCAGCAGGATCGACAGCACG
* * **
12502558 CA-GGGGGGACCGGGCCGGTCCCTGGCTTACGCATTCTGCCTCTCCAATCGGCTAGCGCCCGCAC
65 CAGGGGGGGATCGGG-CGATCCCTGGCTTACGCATTCTGCCTCTCCAGCCGGCTAGCGCCCGCAC
* * * * *
12502622 ACCCGTTTCATGGGTTGGCTTAGGTGTAG
129 GCTCGTTTCGTGGGTTGGCTTAGGTATAC
* ** * * * *
12502651 GGAGTTCATTCCCTGTCTAAGCCCCAG-CCAGACCAAGGGTTGTGGCAGC-GGTACCTACAACAC
1 GGAGTTCATTCCCAGTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAGCAGG-ATCGACAGCAC
* * * * * * * *
12502714 GCAGAGGGGGATCGAGCCAT-CCTCGACTTACGCATTATGCCTCTTC-GACAGGCTCAGGGCCCG
64 GCAGGGGGGGATCGGGCGATCCCT-GGCTTACGCATTCTGCCTCTCCAG-CCGGCT-AGCGCCCG
* *
12502777 CACGCTCGTTTCGTGGGTTGACTT-GTTTATAC
126 CACGCTCGTTTCGTGGGTTGGCTTAG-GTATAC
* ** * *
12502809 GGAGTTCATTCCCAGACTAAGATTGGACCAGATCGAGGGTTGTGGCAGCAGGATCGACAGCATGC
1 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC
** * * *
12502874 AGGGGGGGATCGGGCTGATCCCTGGCTTGTGCATTCTGCCTCTCCAGCCGGCTGACCACCCGCAT
66 AGGGGGGGATCGGGC-GATCCCTGGCTTACGCATTCTGCCTCTCCAGCCGGCT-AGCGCCCGCAC
* * *
12502939 GCTCATTTTGTGGGTTGGCTTAGGCATAC
129 GCTCGTTTCGTGGGTTGGCTTAGGTATAC
12502968 GGAGTTCATT-CCATGTCTAAG
1 GGAGTTCATTCCCA-GTCTAAG
12502989 CATACAGAGT
Statistics
Matches: 264, Mismatches: 60, Indels: 27
0.75 0.17 0.08
Matches are distributed among these distances:
156 5 0.02
157 44 0.17
158 136 0.52
159 74 0.28
160 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC
AGGGGGGGATCGGGCGATCCCTGGCTTACGCATTCTGCCTCTCCAGCCGGCTAGCGCCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGTATAC
Found at i:12502991 original size:26 final size:26
Alignment explanation
Indices: 12502962--12503014 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12502952 GTTGGCTTAG
*
12502962 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12502988 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12503014 G
1 G
12503015 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12503375 original size:26 final size:26
Alignment explanation
Indices: 12503338--12503390 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12503328 GTTGACTTAG
12503338 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
12503364 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
12503390 G
1 G
12503391 ATCGGTCCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:12503716 original size:158 final size:157
Alignment explanation
Indices: 12503364--12503726 Score: 358
Period size: 158 Copynumber: 2.3 Consensus size: 157
12503354 CCCAATCTAA
* * * *
12503364 GCATACGGAGTTCATTCCCAGTCTAAGATCGG-TCCAGACCGAGGGTTGCGACAACAGGATCGAT
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGAT-CGGACCAAGGGTTGCGACAACAGGACCGAC
* * * ** *
12503428 AGCGCGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGTATTCTGCCTCGCTGGCCGACTGAATGC
64 AGCGCGTAGGAGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCGCTAACCGACTCAATGC
* * *
12503493 CCACACGCCCATTTTATGGGTTGGCTTAG
129 CCAAACGCCCATTTCATGGGTTGACTTAG
* ** ** * *
12503522 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCAAGGGTTGTGGCAACAGGACCGACA
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGGATCGGACCAAGGGTTGCGACAACAGGACCGACA
* * * * * *
12503587 GTGCAG-AGAGAGGGATCGGGCTGA-CCTCGGCTTGCGCATTATGCCCTTC-C-AACCGGCTCAG
65 GCGC-GTAG-GAGGGACCGGGCCGATCCCCGGCTTGCGCATTATG-CC-TCGCTAACCGACTCAA
* *
12503648 TGCCCAAACGCTCATTTCGTGGGTTGACTTAG
126 TGCCCAAACGCCCATTTCATGGGTTGACTTAG
*
12503680 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCTAGGGTT
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGGATCGGACCAAGGGTT
12503727 ACAGTAGCAG
Statistics
Matches: 164, Mismatches: 34, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
157 3 0.02
158 141 0.86
159 18 0.11
160 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGACAACAGGACCGACAG
CGCGTAGGAGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCGCTAACCGACTCAATGCCC
AAACGCCCATTTCATGGGTTGACTTAG
Found at i:12503888 original size:26 final size:26
Alignment explanation
Indices: 12503838--12503890 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12503828 GTTTGCTTAG
* *
12503838 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
12503864 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
12503890 G
1 G
12503891 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:12504234 original size:26 final size:26
Alignment explanation
Indices: 12504205--12504257 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12504195 GTTGACTTAG
12504205 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12504231 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12504257 G
1 G
12504258 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12504495 original size:867 final size:865
Alignment explanation
Indices: 12501945--12505967 Score: 3833
Period size: 867 Copynumber: 4.6 Consensus size: 865
12501935 CCCAGTCTAA
* * * * * *
12501945 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGACAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCAGGATCGACA
** * * * *
12502010 GCACGCAGGGGGGACCGGGTTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGTTAAGCGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
* *
12502075 CGCACGCTCGCTTT-GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACGGAG
131 CGCACGCTC-ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
* * * ** * * *
12502139 TTCATTCCCAGTCTAAGATTAGACTGGACTGAGATTTACGATAACAGGACCAGCAGCAGGATCGA
195 TTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTACGGTAGCAGGACCAGTAGCAGGATCGA
* * * *
12502204 CAGCACACAGGAGGGGATCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCT----T---C-G-GC
260 CAGCACAGA-G-GGGGACCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCAATCAGCTGAGC
* * *
12502260 -CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATGCCATGTCTAAGCCCCAGC
323 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * * ** ** * * *
12502324 TGGACAGAGAGTTGTGGCTGC-AGGACTGGCAGTGGGATCGGTAGCATGCAGAGGAGGACCGGGT
388 CGGACCGAGGGTTGTGGCAGCGA-GACCGGCAGCAGGATCGACAGCATGCAGAGGGGGATCGGGC
** * * * * *
12502388 TGATCCCTGGCTTGCGTATTATGCCTCTCCG-GCTGGCTGAGCACCCGCACACTCGTTTCGTGTG
452 TGATCCCCAGCTTACGCATTATGCCTCTCCGATC-GGCTGAGCACCCGCACGCTCGTTTCGTGGG
* * * * *
12502452 TTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGGATAAGGAGTTCATTCCCAGTCTAAGATC
516 TTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
12502517 AGATCAGACCGAGGGTTATG-GGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGGTCCCT
581 GGACCAGACCGAGGG-T-TGCGACAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCC
* * * * * *
12502581 GGCTTACGCATTCTGCCTCTCCAATCGGCT-AGCGCCCGCACACCCGTTTCATGGGTTGGCTTAG
644 GGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAG
** * * * * *
12502645 GTGTAGGGAGTTCATTCCCTGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCGGTACCTACA
709 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAGCGGGACCGACA
* * * * * * * *
12502710 ACACGCAGAGGGGGATCGAGCCATCCTCGACTTACGCATTATGCCTCTTCGACAGGCTCAGGGCC
774 GCAC-AAGAGGGGGACCGGGCGATCCCCGACTTACGCATTATGCCTCTTCGACCGGCTCAGCGCC
*
12502775 CGCACGCTCGTTTCGTGGGTTGACTT-G
838 CGCACGCTCATTTCGTGGGTTGACTTAG
** * * * **
12502802 TTTATACGGAGTTCATTCCCAGACTAAGATTGGACCAGATCGAGGGTTGTGGCAGCAGGATCGAC
1 -GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCAGGATCGAC
* * * * * * *
12502867 AGCATGCAGGGGGGGATCGGGCTGATCCCTGGCTTGTGCATTCTGCCTCTCCAGCCGGCTGACCA
65 AGCACGCA-GGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
* * *
12502932 CCCGCATGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGA
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
* * * * *
12502997 GTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGACCAGTAGTAGGATCG
194 GTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTACGGTAGCAGGACCAGTAGCAGGATCG
** * * * * * * * *
12503062 GTAGCAC-GCAGGGGGGATCAGGCCGATCCCCATCTTACGTATTCTGCCTCTCCGACCAGCTGAG
259 ACAGCACAG-A-GGGGGACCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCAATCAGCTGAG
** * * *
12503126 CGCCCATACGCTCGTTTCGAGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAG
322 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
* * * * ** * * *
12503191 CCAGACTGAGGGTTGTGGTA--G-GATCGATAGCGGGATCGACAGCACGCAGAGGGGGATCGGGT
387 CCGGACCGAGGGTTGTGGCAGCGAGACCGGCAGCAGGATCGACAGCATGCAGAGGGGGATCGGGC
* * *
12503253 TGAT-CCCTGACTTGCGCATTATGCCTCTCCGGTCGACCTGTCCGACCGGTTGAGCACCC-CACG
452 TGATCCCCAG-CTTACGCATTATGCCTCT-C---CGA----T-----CGGCTGAGCACCCGCACG
12503316 CTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTC
503 CTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTC
* * * * *
12503381 CCAGTCTAAGATCGGTCCAGACCGAGGGTTGCGACAACAGGATCGATAGCGCGTAGGGGGGACCG
568 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACCG
* * * * *** * * *
12503446 GGCCGATCCCCGGCTTGCGTATTCTGCCTCGCTGGCCGACTGAATGCCCACACGCCCATTTTATG
633 GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCCCGTTTCATG
* *
12503511 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCAAGGGTTGTGGCAA
698 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAG
* ** * * * * * *
12503576 CAGGACCGACAGTGCAGAGAGAGGGATCGGGCTGA-CCTCGGCTTGCGCATTATGCC-CTTCCAA
763 CGGGACCGACAGCACA-AGAGGGGGACCGGGC-GATCCCCGACTTACGCATTATGCCTCTT-CGA
* **
12503639 CCGGCTCAGTGCCCAAACGCTCATTTCGTGGGTTGACTTAG
825 CCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * * * * *
12503680 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCTAGGGTTACAGTAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCAGGATCGACA
* * * * *
12503745 ACACGCAGGGGGGACCAGGCCGATCCCTGGCTTGCGTATTCTACCTCTCCGGTCGGCTGAGCGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
* * *
12503810 CGCACGCTCATTTCATGGGTTTGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGT
131 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGT
* * ** * *
12503875 TCATTCCCAATCTAAGATCGGA-TCGAACCTTGGGTTACGGTAGCGGGACCAGCAGCAGGATCGA
196 TCATTCCCAGTCTAAGATCAGACT-GAACCGAGGGTTACGGTAGCAGGACCAGTAGCAGGATCGA
* ** *
12503939 CAGCAGCAGAGGGGGACCGGGCCGATCCCTAGCTTGCGCATTCTTCCTCTCCGGTTAGCTGAGCG
260 CAGCA-CAGAGGGGGACCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCAATCAGCTGAGCG
* * * *
12504004 CCCGCACGCTCGTTAT-GTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTATAAGCCCCAGT
324 CCCGCACGCTCATT-TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
* ** *
12504068 CGGACCAAGGGTTGTGGCAGCGAGACCGGCAGCAGGATCGGTAGCATGCAGAGGGGGATCGAGCT
388 CGGACCGAGGGTTGTGGCAGCGAGACCGGCAGCAGGATCGACAGCATGCAGAGGGGGATCGGGCT
* * * * *
12504133 -ATTCCCCAGCTTACGAATTATGCCTCTCCGATCGGCTGAGCGCCCGCATGGTCATTTCGTGGGT
453 GA-TCCCCAGCTTACGCATTATGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
* *
12504197 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
517 TGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * * *
12504262 GACCGGATCGAGGGTTGCGATAGTAGGATCGATAGCACGCAGGGGGGATCGGGCCGGTCCCCGGC
582 GACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGC
* * * * ** * *
12504327 TTGCGCCTTCTGCCTCTCCGACTGGCTGAGCAACCGCACGTTCGTTTCGTGGGTTGGCTTAGGCG
647 TTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCA
* * * * *
12504392 TAGGGAGTTCATTCCATTTCTAAGCCCCAACCGGATCGAGGGTTGTGGTAGCGGGACCTACAGCA
712 TAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAGCGGGACCGACAGCA
* * ** ** * * **
12504457 CAAGAGGTGGACCGGGTCGATCCCCAACTTGTGCATTATGCCTCTTCGGTCAGCTCAACGCTTGC
777 CAAGAGGGGGACCGGG-CGATCCCCGACTTACGCATTATGCCTCTTCGACCGGCTCAGCGCCCGC
*
12504522 ACGCTCATTTCGTGGGTTGACTTAT
841 ACGCTCATTTCGTGGGTTGACTTAG
* * * ** ** *
12504547 ACATACGGAGTTCATTCCCAGACTAAGATCAGACCGGATCGAGGGTTGTGATAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCAGGATCGACA
* * * * * **
12504612 ACACGCAGGGGGGACCGGGTCGATCCCTGGCTT-AGCATTCTACCTCTCTGATCGGCTGAGCGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
* ** * * *
12504676 CGCATGCTTGTTTTGTGGGTTGGCCTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGT
131 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGT
* * * *
12504741 TCATTCCTAGTCTAAGATCAGACTGAACCGAGGGTTGCGGTAGCATGACCCGTAGCAGGATCGAC
196 TCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTACGGTAGCAGGACCAGTAGCAGGATCGAC
* ** * * * *
12504806 AGCACACAGGGGGGCACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCAACCGGTTGAGCG
261 AGCACAGA-GGGGG-ACCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCAATCAGCTGAGCG
* * ** * *
12504871 CCCGCACACTCATTTCGAGGGAAGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGGCCCAGCC
324 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * * *
12504936 GGACCGAGGGTTGTGACAGC-AGGACTGGTAGC-GAGATCGACAGCATGTAGAGGGGCA-CTGGG
389 GGACCGAGGGTTGTGGCAGCGA-GACCGGCAGCAG-GATCGACAGCATGCAGAGGGGGATC-GGG
* *
12504998 CTGATCCCCAGCTTACGCATTATGCCTCTTCGACCGGCCTCTCCGATCGACTAAGTGCCCGCACG
451 CTGATCCCCAGCTTACGCATTATGCCTCTCCGATCGG---CT--GA--G-C--A---CCCGCACG
** * *
12505063 CTCGTTTTATGGGTTGACTTAGGCATACGAAGTTAATCCCCAATCTAAGCATACGAAGTTCATTC
503 CTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTC
* * ** * * *
12505128 CCAGTCTAAGATCGGTCTAGACCGAGGGTTGCGGTAGCAGGATCAACAGCACGTAGGGGGGATCG
568 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACCG
* * *
12505193 GGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCATGCCCGTTTCGTG
633 GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCCCGTTTCATG
* * *
12505258 GGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCAAGGGTTGTGGCAG
698 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAG
* * * ** *
12505323 CGGGATCGGCAGCATGC-AGAGGGGGACCAGGCCGATCCCCGTTTTACGCATTATGCCTTTTCTG
763 CGGGACCGACAGCA--CAAGAGGGGGACC-GGGCGATCCCCGACTTACGCATTATGCCTCTTC-G
** * * * *
12505387 -TTGGTTCAGCACCCGCACGCTCATTTCGTGCGTTGACTTAT
824 ACCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * ** * * * *
12505428 GCATACGAAGTTTATTCCTAGTCTAAGATCGG-GTGGCACCGAGGGTTGCGGCAGCAGGATAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG-ATCGAGGGTTACGGCAGCAGGATCGAC
** * * * * * *
12505492 AGCACATAGGGGGGATCGGGCCGATCCCTGGCTTGCGCTTTTTGCCTCTCCGACCAGTTGAGCGC
65 AGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
* * * * * *
12505557 CCGTACCCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGGATATGGGG
130 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
* * * * * * *
12505622 TTCATTCCTAGTCTACGATCAGACT-AGATCGAAGGTTACGGCAGTAGGACCAGTAGTAGGATCG
195 TTCATTCCCAGTCTAAGATCAGACTGA-ACCGAGGGTTACGGTAGCAGGACCAGTAGCAGGATCG
** * * * * * * * *
12505686 GTAGCAC-GTAGGAAGCACAGGGCCGATCCCT-GACTTGCGCATTCTACCTCTTCAGTCGGTTGA
259 ACAGCACAG-AGG-GGGACCGGGCCGATCCCTAG-CTTGCGCATTCTGCCTCTCCAATCAGCTGA
* ** * * *
12505749 GCGTCTACAGGCTAATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCA
321 GCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
** * * *
12505814 GAGGGACCGAGGGTTGTGGTAGC--G---GG-A-C-----CGACAGCACGCAGAGGGGGACCGGG
386 GCCGGACCGAGGGTTGTGGCAGCGAGACCGGCAGCAGGATCGACAGCATGCAGAGGGGGATCGGG
* * ** * * ** * *
12505867 CCGATCCCCATCTTGTGCATTATGCCCCTTCGGCCTGCTGAGCACCCGCACGCTCGTTTCATGGG
451 CTGATCCCCAGCTTACGCATTATGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGG
* * * * *
12505932 TTGACTTATGCATCCGGAGTTCATTCCCAGTCTAAG
516 TTGACTTAGGCATACGAAGTTCATCCCCAATCTAAG
12505968 ATTTGATTGG
Statistics
Matches: 2598, Mismatches: 487, Indels: 162
0.80 0.15 0.05
Matches are distributed among these distances:
856 50 0.02
858 95 0.04
859 166 0.06
861 1 0.00
862 1 0.00
864 5 0.00
865 56 0.02
866 177 0.07
867 548 0.21
868 73 0.03
869 52 0.02
870 3 0.00
871 1 0.00
872 2 0.00
874 2 0.00
875 8 0.00
876 343 0.13
877 298 0.11
878 17 0.01
879 52 0.02
880 251 0.10
881 256 0.10
882 141 0.05
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (865 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTACGGTAGCAGGACCAGTAGCAGGATCGAC
AGCACAGAGGGGGACCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCAATCAGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
ACCGAGGGTTGTGGCAGCGAGACCGGCAGCAGGATCGACAGCATGCAGAGGGGGATCGGGCTGAT
CCCCAGCTTACGCATTATGCCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGAC
TTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
AGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGC
GCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGG
GAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAGCGGGACCGACAGCACAAG
AGGGGGACCGGGCGATCCCCGACTTACGCATTATGCCTCTTCGACCGGCTCAGCGCCCGCACGCT
CATTTCGTGGGTTGACTTAG
Found at i:12504627 original size:158 final size:156
Alignment explanation
Indices: 12504232--12504638 Score: 385
Period size: 158 Copynumber: 2.6 Consensus size: 156
12504222 CCAGTCTAAG
* * * * *
12504232 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGATAGTAGGATCGATAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGATAGCAGGATTGACAG
* * * ** * * *
12504297 CACGCAGGGGGGATCGGGCCGGTCCCCGGCTTGCGCCTTCTGCCTCTCCGACTGGCTGAGCAACC
66 CACGCAGGGGGGACCGGGTCGATCCCCAACTTGCGCATTATGCCTCTCCGACTAGCT--GCAACC
* * * *
12504362 GCACGTTCGTTTCGTGGGTTGGCTTAGG
129 GCACGCTCATTTCGTGGGTTGACTTAGA
* * * ** * * *
12504390 CGTAGGGAGTTCATT-CCATTTCTAAGCCCCA-ACCGGATCGAGGGTTGTGGTAGCGGGACCT-A
1 CATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGTGATAGCAGGA-TTGA
* * * * *
12504452 CAGCAC-AAGAGGTGGACCGGGTCGATCCCCAACTTGTGCATTATGCCTCTTCG-GTCAGCT-CA
63 CAGCACGCAG-GGGGGACCGGGTCGATCCCCAACTTGCGCATTATGCCTCTCCGACT-AGCTGCA
*
12504514 ACGCTTGCACGCTCATTTCGTGGGTTGACTTATA
126 AC-C--GCACGCTCATTTCGTGGGTTGACTTAGA
* *
12504548 CATACGGAGTTCATTCCCAGACTAAGATCAGACCGGATCGAGGGTTGTGATAGCAGGATTGACAA
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGATAGCAGGATTGACAG
12504613 CACGCAGGGGGGACCGGGTCGATCCC
66 CACGCAGGGGGGACCGGGTCGATCCC
12504639 TGGCTTAGCA
Statistics
Matches: 194, Mismatches: 43, Indels: 24
0.74 0.16 0.09
Matches are distributed among these distances:
155 4 0.02
156 1 0.01
157 9 0.05
158 174 0.90
159 6 0.03
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (156 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGATAGCAGGATTGACAG
CACGCAGGGGGGACCGGGTCGATCCCCAACTTGCGCATTATGCCTCTCCGACTAGCTGCAACCGC
ACGCTCATTTCGTGGGTTGACTTAGA
Found at i:12504733 original size:26 final size:26
Alignment explanation
Indices: 12504704--12504756 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12504694 GTTGGCCTAG
*
12504704 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
12504730 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
12504756 G
1 G
12504757 ATCAGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:12505121 original size:26 final size:26
Alignment explanation
Indices: 12505085--12505137 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12505075 GTTGACTTAG
12505085 GCATACGAAGTTAATCCCCAATCTAA
1 GCATACGAAGTTAATCCCCAATCTAA
* * *
12505111 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTAATCCCCAATCTAA
12505137 G
1 G
12505138 ATCGGTCTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTAATCCCCAATCTAA
Found at i:12505590 original size:158 final size:156
Alignment explanation
Indices: 12505111--12505612 Score: 456
Period size: 158 Copynumber: 3.2 Consensus size: 156
12505101 CCCAATCTAA
* *
12505111 GCATACGAAGTTCATTCCCA-GTCTAAGATCGGTCTAGACCGAGGGTTGCGGTAGCAGGATCA-A
1 GCATACGAAGTTCATT-CCATGTCTAAGATCGG-CTGGACCGAGGGTTGCGGCAGCAGGAT-AGA
* * *
12505174 CAGCACGTAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCA
63 CAGCACATAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCG-TTGAGCA
* *
12505239 CCCGCATGCC-CGTTTCGTGGGTTAGCTTAG
127 CCCGCA-CCCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * * * * *
12505269 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCAAGGGTTGTGGCAGCGGGATCGGCA
1 GCATACGAAGTTCATTCCATGTCTAAGATC-GGCTGGACCGAGGGTTGCGGCAGCAGGATAGACA
* * * ** * * * *** *
12505334 GCATGCAGA-GGGGGACCAGGCCGATCCCCGTTTTACGCATTATGCCTTTTCTGTTGGTTCAGCA
65 GCA--CATAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCC-TCTCCGACCGTTGAGCA
* * * * *
12505398 CCCGCACGCTCATTTCGTGCGTTGACTTAT
127 CCCGCACCCTCGTTTCGTGGGTTGGCTTAG
* * *
12505428 GCATACGAAGTTTATTCC-TAGTCTAAGATCGGGTGGCACCGAGGGTTGCGGCAGCAGGATAGAT
1 GCATACGAAGTTCATTCCAT-GTCTAAGATCGGCTGG-ACCGAGGGTTGCGGCAGCAGGATAGAC
* * * * *
12505492 AGCACATAGGGGGGATCGGGCCGATCCCTGGCTTGCGCTTTTTGCCTCTCCGACCAGTTGAGCGC
64 AGCACATAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACC-GTTGAGCAC
*
12505557 CCGTACCCTCGTTTCGTGGGTTGGCTTAG
128 CCGCACCCTCGTTTCGTGGGTTGGCTTAG
*
12505586 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGAAGTTCATTCCATGTCTAAG
12505613 GATATGGGGT
Statistics
Matches: 259, Mismatches: 73, Indels: 24
0.73 0.21 0.07
Matches are distributed among these distances:
157 10 0.04
158 135 0.52
159 107 0.41
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (156 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCGGCTGGACCGAGGGTTGCGGCAGCAGGATAGACAG
CACATAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGTTGAGCACCCG
CACCCTCGTTTCGTGGGTTGGCTTAG
Found at i:12505995 original size:159 final size:158
Alignment explanation
Indices: 12505771--12506125 Score: 374
Period size: 158 Copynumber: 2.2 Consensus size: 158
12505761 TAATTTCGTG
* * **** * * **
12505771 GGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGA-GGGACCGAGGGTTGTGGTA
1 GGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG-ATTTGATTGGACCGAAGGTTGCAGTA
* * * * * *
12505835 GCGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCC-ATCTTGTGCATTATGCCCCTTCG
65 GCAGGACCGACAACACGCAG-GGGGGACCAGACCGATCCCCGA-CTTATGCATTATGCCCCTCCG
* *
12505899 GCCTGCTGAGCACCCGCACGCTCGTTTCATG
128 GCCGGCTGAGCACCCGCACGCTCGTTTCATA
* *
12505930 GGTTGACTTATGCATCCGGAGTTCATTCCCA-GTCTAAGATTTGATTGGACCGAAGGTTGCAGTA
1 GGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGATTTGATTGGACCGAAGGTTGCAGTA
* * * * * *
12505994 GCAGGATCGAGAACACGCAGGGGGGATCAGACTGATCCCCGACTTATGCATTCTGCCTCTCCGGC
65 GCAGGACCGACAACACGCAGGGGGGACCAGACCGATCCCCGACTTATGCATTATGCCCCTCCGGC
* * *
12506059 CGGTTGAGCCCCCGCACGCTCGTTTCGTA
130 CGGCTGAGCACCCGCACGCTCGTTTCATA
* *
12506088 GGTTGGCTTAGGCTTACGGAGTTCATTCCATGTCTAAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
12506126 CATACGGAGT
Statistics
Matches: 159, Mismatches: 33, Indels: 9
0.79 0.16 0.04
Matches are distributed among these distances:
157 3 0.02
158 91 0.57
159 62 0.39
160 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATTTGATTGGACCGAAGGTTGCAGTAG
CAGGACCGACAACACGCAGGGGGGACCAGACCGATCCCCGACTTATGCATTATGCCCCTCCGGCC
GGCTGAGCACCCGCACGCTCGTTTCATA
Found at i:12506138 original size:26 final size:26
Alignment explanation
Indices: 12506102--12506151 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
12506092 GGCTTAGGCT
12506102 TACGGAGTTCATTC-CATGTCTAAGCA
1 TACGGAGTTCATTCTCA-GTCTAAGCA
12506128 TACGGAGTTCATTCTCAGTCTAAG
1 TACGGAGTTCATTCTCAGTCTAAG
12506152 ATTTTTTTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCTCAGTCTAAGCA
Found at i:12506855 original size:26 final size:26
Alignment explanation
Indices: 12506819--12506872 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
12506809 TGGGTTGACT
12506819 TAGGCATACGGAGTTCA-TCCCTAGTC
1 TAGGCATACGGAGTTCATTCCC-AGTC
12506845 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
12506871 TA
1 TA
12506873 AGGTCAGATC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:12507179 original size:158 final size:157
Alignment explanation
Indices: 12506905--12507190 Score: 396
Period size: 158 Copynumber: 1.8 Consensus size: 157
12506895 GTGACAGCAA
* * *
12506905 GATCGACAGCACGCAGAGGGGATCGGGCCGATCCCCGGCTGCGCATTCTGCCTCTCCGGCTGTAT
1 GATCGACAGCACGCAGAGGGGATCAGGCCGATCCCCGGCTGCGCATTCTGCCTCTCCGACCGTAT
* * * *
12506970 GAGCGCCCGCACGCCCGTTTCGTCGGTTGGCTTAGGCATAGGTAGTTCATTCCATGTTTAAGCCC
66 GAGCGCCCGCACACCCATTTCGTCGGCTGGCTTAGGCATAGGTAGTTCATTCCATGTCTAAGCCC
12507035 CAGTCAGAATGAGGGATGCTGCAGTAG
131 CAGTCAGAATGAGGGATGCTGCAGTAG
* * * * *
12507062 GATCGATAGTACGCAGGGGGGATCAGGCCGATCCCCGGCTTGCGTATTCTGCCTCTCTGACCG-A
1 GATCGACAGCACGCAGAGGGGATCAGGCCGATCCCCGGC-TGCGCATTCTGCCTCTCCGACCGTA
* * *
12507126 CTGAGCGCCCTCACACTCATTTCGTGGGCTGGCTTAGGCATACGG-AGTTCATTCCATGTCTAAG
65 -TGAGCGCCCGCACACCCATTTCGTCGGCTGGCTTAGGCATA-GGTAGTTCATTCCATGTCTAAG
12507190 C
128 C
12507191 ATATGAAGTT
Statistics
Matches: 111, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
157 36 0.32
158 73 0.66
159 2 0.02
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (157 bp):
GATCGACAGCACGCAGAGGGGATCAGGCCGATCCCCGGCTGCGCATTCTGCCTCTCCGACCGTAT
GAGCGCCCGCACACCCATTTCGTCGGCTGGCTTAGGCATAGGTAGTTCATTCCATGTCTAAGCCC
CAGTCAGAATGAGGGATGCTGCAGTAG
Found at i:12507812 original size:343 final size:341
Alignment explanation
Indices: 12506791--12507888 Score: 1107
Period size: 343 Copynumber: 3.2 Consensus size: 341
12506781 TCAGCCGAGC
* * *
12506791 GCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAGGCATACGG
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCC-AGTCTAAGCATACGA
* * ** ** * *
12506856 AGTTCATTCCCAGTCTAAGGTCAGATCAGATCAAGGGTTGTGACAGCAAGATCGACAGCACGCAG
65 AGTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTACGGTAGTAGGATCGACAGCACGCAG
* * * * *
12506921 AGGGGATCGGGCCGATCCCCGGC-TGCGCATTCTGCCTCTCCG-GCTGTATGAGCGCCCGCACGC
130 AGGGGGTCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGT-TGAGCGCCCGCACGC
* * * * * * **
12506984 CCGTTTCGTCGGTTGGCTTAGGCATAGGTAGTTCATTCCATGTTTAAGCCCCAGTCAGAATGAGG
194 CCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGG
* * * *
12507049 GATGCT-GCAGTAGGATC-GATAGTACGCAG-GGGGGATCAGGCCGATCCCCGGCTTGCGTATTC
259 GTTG-TGGCAGTAGGATCGGA-AGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGTATTA
* * * * *
12507111 TGCCTCTCTGACCGACTGAG
322 TGCCTCTCCGGCTGGCTAAG
* * * * * * *
12507131 CGCCCTCACACTCATTTCGTGGGCTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATG
1 -GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCA-GTCTAAGCATACG
* * *
12507196 AAGTTCATTCCCAATCTAAGATCGGATCGGATCAAGGGTTGCGACAGTAGGACTAGCAGCAGGCT
64 AAGTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTT---ACGGTA-G--TAG--G-A---T
* * * * * *
12507261 CGACAGCACGCAG-GGGCAGAC-CGTGCTGATCCCTGGCTTGCGCATTCTACCTCTCCGATCGGC
117 CGACAGCACGCAGAGGG-GGTCGGGT-C-GATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGT
** * *
12507324 TGAGCGCCTACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
179 TGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * * * * * *
12507389 CTAGTCGGACCGAGTGTTGTGGCAGTAGGATCGGAAGCACGCAAAGGGGGACCGCGCTGATCCCT
244 CCAGTCGGACCGAGGGTTGTGGCAGTAGGATCGGAAGCACGCAGAGGGGGATCGGGCCGATCCCC
*
12507454 GGCTTACGTATTATGCCTCTCCGGCTGGCTAAG
309 GGCTTGCGTATTATGCCTCTCCGGCTGGCTAAG
* * *
12507487 TGCCCGTACGCTCGTTTCGTGGGTAGACTTAGGCATACGGAGTTCATCCGCAATCTAAGCATACG
1 -GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCC-CAGTCTAAGCATACG
* * *
12507552 AAGTTCATTCCCAGTCTAAGATAAGATCGGATCGAGGGTTACGGTAGTAGGATCGATAGCACGCA
64 AAGTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTACGGTAGTAGGATCGACAGCACGCA
* * * *
12507617 GAGGGGGTCGGGTCGTTCCCCGGCTTACACATTCTACCTCTCCGACCGGTTGAGCACCCGCACGC
129 GAGGGGGTCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGTTGAGCGCCCGCACGC
*
12507682 CCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGGCGGACCGAGG
194 CCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGG
** * * ** * * * * *
12507747 GTTGTGGCAGCGGGACCGGCAGCATACAGAGGGCGATCGGGCCAATCCCCGACCTGCGCATTATG
259 GTTGTGGCAGTAGGATCGGAAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGTATTATG
* *
12507812 CCTCTTC-GATCGGCTCAACG
324 CCTCTCCGGCT-GGCT-AA-G
* *
12507832 G-CCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCAGTCTAAG
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCCAGTCTAAG
12507889 ATCGACAGCA
Statistics
Matches: 611, Mismatches: 118, Indels: 54
0.78 0.15 0.07
Matches are distributed among these distances:
340 1 0.00
341 88 0.14
342 2 0.00
343 207 0.34
344 23 0.04
345 7 0.01
347 2 0.00
348 1 0.00
349 1 0.00
350 4 0.01
352 5 0.01
353 21 0.03
354 10 0.02
355 105 0.17
356 132 0.22
357 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (341 bp):
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACGAA
GTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTACGGTAGTAGGATCGACAGCACGCAGA
GGGGGTCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGTTGAGCGCCCGCACGCCC
ATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGT
TGTGGCAGTAGGATCGGAAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGTATTATGCC
TCTCCGGCTGGCTAAG
Found at i:12509092 original size:159 final size:156
Alignment explanation
Indices: 12508745--12509220 Score: 442
Period size: 158 Copynumber: 3.0 Consensus size: 156
12508735 TAAGCATATG
* * * * * *
12508745 CCAGTCTAAGGTCGGACTGGACCGATGGTTGCGGCAGCAGCATCGGCAGCACGCAGGGGGGACC-
1 CCAGTCTAAGATCAGA-TGGAACGAGGGTTGTGGCAGCAGGATC-GCAGCACGCAGGGGGGACCG
* * ** * *
12508809 AGACCGATCCCCAGCTTGTGCATTCTGCCTCTATGGCCGACTGAGCGCCCACACG-CCTGTTTCG
64 AG-TCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGTTC-GTTTCG
*
12508873 TGGGTTGGCTTTGGCATACGGAGTTCATT-
127 TGGGTTGGCTTAGGCATACGGAGTTCATTC
* ** ** * *
12508902 TCATGTCTAAGCCCCAG-CCGAACTGAGGGTTGTGGTAGCAGGATCTGCAGCACGCAGAGAGGGA
1 CCA-GTCTAAG-ATCAGATGGAAC-GAGGGTTGTGGCAGCAGGATC-GCAGCACGCAG-GGGGGA
* * * * * *
12508966 CCGAGTCGATCCCCGGCTTGTGCATTATGCCTCTCCAGTCGGCTCAGCGCCCGTACGTTCGTTTC
61 CCGAGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGTTCGTTTC
*
12509031 GTGGGTTGACTTAGGCATACGGAGTTCATTC
126 GTGGGTTGGCTTAGGCATACGGAGTTCATTC
* * * *
12509062 CCAGTCTAAGATCAGATTGGATCGAGGGTTGTGACAGCAGGATCGACAGAACGTAGGGGGGACCG
1 CCAGTCTAAGATCAGA-TGGAACGAGGGTTGTGGCAGCAGGATCG-CAGCACGCAGGGGGGACCG
* * * * * *
12509127 GGTC-ACTCCTCGGCTTATGCATTCTACCTCTCCGGCCAACTGAGCGCCCGCACGCTT-ATTTCG
64 AGTCGA-TCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACG-TTCGTTTCG
* *
12509190 TGGGTTGGCTTAGGCACACGGAATTCATTC
127 TGGGTTGGCTTAGGCATACGGAGTTCATTC
12509220 C
1 C
12509221 ATGTTTAAGC
Statistics
Matches: 254, Mismatches: 53, Indels: 23
0.77 0.16 0.07
Matches are distributed among these distances:
157 6 0.02
158 121 0.48
159 119 0.47
160 8 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
CCAGTCTAAGATCAGATGGAACGAGGGTTGTGGCAGCAGGATCGCAGCACGCAGGGGGGACCGAG
TCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGTTCGTTTCGTGGG
TTGGCTTAGGCATACGGAGTTCATTC
Found at i:12509202 original size:158 final size:160
Alignment explanation
Indices: 12508779--12509231 Score: 433
Period size: 159 Copynumber: 2.9 Consensus size: 160
12508769 ATGGTTGCGG
* * * * * * *
12508779 CAGCAGCATCGGCAGCACGCAG-GGGGGACC-AGACCGATCCCCAGCTTGTGCATTCTGCCTCTA
1 CAGCAGGATCTGCAGAACGCAGAGAGGGACCGAG-TCGATCCCCGGCTTGTGCATTCTGCCTCTC
* * * * *
12508842 TGGCCGACTGAGCGCCCACACGCCTGTTTCGTGGGTTGGCTTTGGCATACGGAGTTCATT-TCAT
65 CGGCCGACTGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAT
* *
12508906 GTCTAAGCCCCAGCCGAACTGAGGGTTGTGG
130 GTCTAAGCACCAGCCGAACTGAGGGTTGTGA
* * *
12508937 TAGCAGGATCTGCAGCACGCAGAGAGGGACCGAGTCGATCCCCGGCTTGTGCATTATGCCTCTCC
1 CAGCAGGATCTGCAGAACGCAGAGAGGGACCGAGTCGATCCCCGGCTTGTGCATTCTGCCTCTCC
* * * * * *
12509002 AGTCGGCTCAGCGCCCGTACG-TTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-
66 GGCCGACTGAGCGCCCGCACGCTT-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAT
* ** *
12509065 GTCTAAG-ATCAGATTGGA-TCGAGGGTTGTGA
130 GTCTAAGCACCAG-CCGAACT-GAGGGTTGTGA
* * * * * *
12509096 CAGCAGGATC-GACAGAACGTAG-GGGGGACCGGGTC-ACTCCTCGGCTTATGCATTCTACCTCT
1 CAGCAGGATCTG-CAGAACGCAGAGAGGGACCGAGTCGA-TCCCCGGCTTGTGCATTCTGCCTCT
* * * *
12509158 CCGGCCAACTGAGCGCCCGCACGCTTATTTCGTGGGTTGGCTTAGGCACACGGAATTCATT-CCA
64 CCGGCCGACTGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA
*
12509222 TGTTTAAGCA
129 TGTCTAAGCA
12509232 TACGGAGTTC
Statistics
Matches: 239, Mismatches: 45, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
157 4 0.02
158 111 0.46
159 120 0.50
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (160 bp):
CAGCAGGATCTGCAGAACGCAGAGAGGGACCGAGTCGATCCCCGGCTTGTGCATTCTGCCTCTCC
GGCCGACTGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATG
TCTAAGCACCAGCCGAACTGAGGGTTGTGA
Found at i:12509458 original size:184 final size:184
Alignment explanation
Indices: 12509045--12509471 Score: 513
Period size: 184 Copynumber: 2.3 Consensus size: 184
12509035 GTTGACTTAG
* * *
12509045 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAT-TGGATCGAGGGTTG-TGACAGCAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-TGATCTGAATCGAGGGTTGCAG-CAGCAGGATCGA
* * * *
12509108 CAGAACGTAGGGGGGACCGGGTCACTCCTCGGCTTATGCATTCTACCTCTCCGGCCAACTGAGCG
64 CAGAACGTAGGGGGGACCGGGCCACTCCTCGACTTATGCATTCTACCTCTCCGACCAACTAAGCG
*
12509173 CCCGCACGCTTATTTCGTGGGTTGGCTTAGGCACACGGAATTCATTCCATGTTTAA
129 CCCGCACGCTTATTTCGTGGGTTGGCCTAGGCACACGGAATTCATTCCATGTTTAA
* * *
12509229 GCATACGGAGTTCATTCCCAGTCTAAGATTGAAC-CAGATCGAGGGTTGCAGCAACAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGATCTGA-ATCGAGGGTTGCAGCAGCAGGATCGAC
* * * * * ** *
12509293 AGCACGTAGGGGGGATCGGGCCAGTCC-CTGACTTGTGCATTCTGCCTCTCCGACCGGCTAAGTG
65 AGAACGTAGGGGGGACCGGGCCACTCCTC-GACTTATGCATTCTACCTCTCCGACCAACTAAGCG
* * * * * * *
12509357 CCTGCACGCTTGTTTCGTGGGTTGGCCTAGGCATATGTAGTTCATTCGAT-TTCTAA
129 CCCGCACGCTTATTTCGTGGGTTGGCCTAGGCACACGGAATTCATTCCATGTT-TAA
* * *
12509413 GCATACGGAGTTCATTCCCAGTCTAAGATTGGTCTGAACCGAGGGTTGCGGCAGCAGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGATCTGAATCGAGGGTTGCAGCAGCAGGA
12509472 CCAGCAGCAA
Statistics
Matches: 205, Mismatches: 32, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
183 5 0.02
184 198 0.97
185 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.25
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGATCTGAATCGAGGGTTGCAGCAGCAGGATCGACA
GAACGTAGGGGGGACCGGGCCACTCCTCGACTTATGCATTCTACCTCTCCGACCAACTAAGCGCC
CGCACGCTTATTTCGTGGGTTGGCCTAGGCACACGGAATTCATTCCATGTTTAA
Found at i:12509784 original size:26 final size:26
Alignment explanation
Indices: 12509754--12509806 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12509744 GTTGACTTAG
*
12509754 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGGTCATCCCCAATCTAA
* *
12509780 GCATACGGAGGTCATTCCCAGTCTAA
1 GCATACGGAGGTCATCCCCAATCTAA
12509806 G
1 G
12509807 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGGTCATCCCCAATCTAA
Found at i:12510075 original size:13 final size:13
Alignment explanation
Indices: 12510057--12510082 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
12510047 TTGTCATTAT
12510057 GCCTCTCCGATCG
1 GCCTCTCCGATCG
12510070 GCCTCTCCGATCG
1 GCCTCTCCGATCG
12510083 ACTGAGCGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.46, G:0.23, T:0.23
Consensus pattern (13 bp):
GCCTCTCCGATCG
Found at i:12510823 original size:26 final size:26
Alignment explanation
Indices: 12510793--12510845 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12510783 GTTGACTTAG
12510793 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
12510819 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12510845 G
1 G
12510846 ATTGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12511314 original size:153 final size:156
Alignment explanation
Indices: 12510883--12511317 Score: 402
Period size: 153 Copynumber: 2.8 Consensus size: 156
12510873 TAGGATCAGT
* * * * *
12510883 AGCACGCAGGGGGGATTGGGTCGATCCCCGGCTTACGCATTCTACCTCTCCGG-TAGGCTGAGCG
1 AGCACGCAGGGGGGATCGGGTTGATCCTCGGCTTACGCATTCTGCCTCTCCGGCTA-ACTGAGCG
* * * * * **
12510947 CCCGCACGCCCGTTTTGTGGGTTGGGTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCTGGTC
65 CCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAATGGTC
*
12511012 AGACCGAGGGTTGTGGCAGCAGGACAAGC
130 AGA-C-AGGATTGTGGCAGCAGGACAAGC
* * ** * * *
12511041 AGCACGCAGAGGGGGATCGGGCTT-ATCACT-GGCTTGCGCATTATGCCTCTTTGACTGACTCAG
1 AGCACGCAG-GGGGGATCGGG-TTGATC-CTCGGCTTACGCATTCTGCCTCTCCGGCTAACTGAG
* * * * * * * *
12511104 GGCCTGAACGCTCATTTCGTGGTTTGTCTCAGGCATACGGAGCTCATTCCCA-ATCTAAG-AATG
63 CGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCAATG
* *
12511167 GATC-GA-A-GATTGTGGTAGCAGGATCGA-C
127 G-TCAGACAGGATTGTGGCAGCAGGA-CAAGC
* * * *
12511195 AGCACGCAGGGGGAATCGGGTTGATCCTCGGCTTACGCATTCTGCATCTCCGGCCAACTGAGCAC
1 AGCACGCAGGGGGGATCGGGTTGATCCTCGGCTTACGCATTCTGCCTCTCCGGCTAACTGAGCGC
* *
12511260 CCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 CCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
12511318 TACAGAGTTC
Statistics
Matches: 215, Mismatches: 51, Indels: 26
0.74 0.17 0.09
Matches are distributed among these distances:
152 7 0.03
153 81 0.38
154 25 0.12
155 3 0.01
158 14 0.07
159 79 0.37
160 6 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (156 bp):
AGCACGCAGGGGGGATCGGGTTGATCCTCGGCTTACGCATTCTGCCTCTCCGGCTAACTGAGCGC
CCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAATGGTCA
GACAGGATTGTGGCAGCAGGACAAGC
Found at i:12511339 original size:26 final size:26
Alignment explanation
Indices: 12511289--12511341 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12511279 GTTGGCTTAG
* *
12511289 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
12511315 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
12511341 G
1 G
12511342 ATCAAATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:12511714 original size:26 final size:26
Alignment explanation
Indices: 12511684--12511736 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12511674 GTTGGCTTAG
12511684 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
*
12511710 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
12511736 G
1 G
12511737 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:12512946 original size:26 final size:26
Alignment explanation
Indices: 12512908--12512960 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12512898 GTTGGCTTAG
*
12512908 GCATACGATGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
12512934 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12512960 G
1 G
12512961 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12513304 original size:26 final size:26
Alignment explanation
Indices: 12513275--12513327 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12513265 GTTGACTTAG
*
12513275 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
*
12513301 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
12513327 G
1 G
12513328 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:12513694 original size:158 final size:158
Alignment explanation
Indices: 12513301--12513801 Score: 566
Period size: 158 Copynumber: 3.2 Consensus size: 158
12513291 CCCAGTCTAA
* * *
12513301 GCATACGGAGTTCATTCCAAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGTAGGATCGATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * *
12513366 GCACGGAGGGTGGATCGGGCCGATCCCTGGCTTGTGCATTCTACCTCTCCGG-CTGGCTGAGCGC
66 GCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGTGCATTCTACCTCTCCGGTC-GGCTGAGCGC
* *
12513430 CAGCACGCCCGTTTCGTGGGTTGACTTAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAG
* * ** * *
12513459 GCATAGGGAG-TCATTCCATA-TCTAAG-CCCCAGTCGGATCGAGGGTTGTGGCAGCGGGA-CTG
1 GCATACGGAGTTCATTCC-TAGTCTAAGATCGGA-TCGGATCGAGGGTTGCGGCAGCAGGATC-G
* * * ** * * * * *
12513520 GCACCACGCAGAGGGGGATCGGGTCGAACCCCAGCTTGTGCATTATGCCTCTTCGGTCGACTTAG
63 ACAGCACGCAG-GGGGGATCGGGTCGATCCCTGGCTTGTGCATTCTACCTCTCCGGTCGGCTGAG
* *
12513585 TGCCCGAACGCTCGTTTCGTGGGTTGACTTAG
127 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
12513617 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATC-GAACTGAGGGTTGCAGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGATC-GAGGGTTGCGGCAGCAGGATCGAC
* *** * * *
12513681 AGTATATAGGGGGGATCGGGTCGGTCCCTGGCTTGCGCATTCTACCTCTCCGATCGGCTGAGCGC
65 AGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGTGCATTCTACCTCTCCGGTCGGCTGAGCGC
*
12513746 CCGCACGCTCGTTTCGTGGGTTGCCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAG
12513775 GCATACGGAGTTCATTCC-ATGTCTAAG
1 GCATACGGAGTTCATTCCTA-GTCTAAG
12513802 CATACAGAGT
Statistics
Matches: 278, Mismatches: 54, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
156 3 0.01
157 45 0.16
158 189 0.68
159 38 0.14
160 3 0.01
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGTGCATTCTACCTCTCCGGTCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:12513811 original size:26 final size:25
Alignment explanation
Indices: 12513775--12513826 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
12513765 GTTGCCTTAG
*
12513775 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
12513801 GCATACAGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
12513826 G
1 G
12513827 ATCCGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:12514019 original size:26 final size:26
Alignment explanation
Indices: 12513983--12514035 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12513973 GTTGACTTGG
12513983 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12514009 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12514035 G
1 G
12514036 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12514698 original size:26 final size:26
Alignment explanation
Indices: 12514668--12514717 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
12514658 GGCTTAGGCA
12514668 TACGGAGTTCATT-CCATGTCTAAGCT
1 TACGGAGTTCATTCCCA-GTCTAAGCT
12514694 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
12514718 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:12515290 original size:26 final size:26
Alignment explanation
Indices: 12515254--12515306 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12515244 GTTGACTTAG
*
12515254 GCATACGAAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
12515280 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12515306 G
1 G
12515307 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12516537 original size:26 final size:26
Alignment explanation
Indices: 12516507--12516558 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
12516497 GTTGACTTAG
*
12516507 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
12516533 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
12516559 AATTAGATCG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:12517039 original size:26 final size:26
Alignment explanation
Indices: 12517009--12517060 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12516999 TTGGCTTAGT
12517009 CATACGAAGTTCATT-CCATGTCTAAG
1 CATACGAAGTTCATTCCCA-GTCTAAG
*
12517035 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
12517061 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:12517416 original size:26 final size:26
Alignment explanation
Indices: 12517387--12517439 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12517377 GTTGACTTAG
12517387 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12517413 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12517439 G
1 G
12517440 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12517612 original size:26 final size:26
Alignment explanation
Indices: 12517583--12517635 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12517573 GTTGGCTTAG
12517583 GCATACGGAGCTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
*
12517609 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
12517635 G
1 G
12517636 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:12522066 original size:26 final size:26
Alignment explanation
Indices: 12522014--12522066 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
12522004 GTTGACTTAG
* * *
12522014 GCATACGAAGTTCATCCCTAGTTTAA
1 GCATACGAAGTTAATCACTAGTCTAA
12522040 GCATACGAAGTTAATTCAC-AGTCTAA
1 GCATACGAAGTTAA-TCACTAGTCTAA
12522066 G
1 G
12522067 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTAATCACTAGTCTAA
Found at i:12522408 original size:26 final size:26
Alignment explanation
Indices: 12522356--12522408 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12522346 GTTGACTTAG
* *
12522356 GCATACGGAGTTCATCCCCAATTTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
12522382 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
12522408 G
1 G
12522409 ATTGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:12522705 original size:343 final size:342
Alignment explanation
Indices: 12521984--12522718 Score: 891
Period size: 342 Copynumber: 2.1 Consensus size: 342
12521974 TTTCCACTTG
* * * * *
12521984 CCCGCGCGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCTAGTTTAAGCATACGAA
1 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATTTAAGCATACGAA
* * * * *
12522049 GTTAATTCACAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGG
66 GTTAATTCACAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGG
* * * * ** * * * *
12522114 GGGGACCAGGCTGGTCCCTGACTTGTGCATTCTATCTCTCCAATCGGCTTAGCACCCGCACACCC
131 GGAGACCAGGCCGATCCCCGACTTGCACATTCTACCTCTCCAATCGACTAAGCACCCACACACCC
* * * *
12522179 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCAAGCCCCAACTGGACCAAGGGTT
196 GTTTCATGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCAAGCCCCAACCGAACCAAGGGTT
* ** *
12522244 GTGGCAGTGGGACCAGCAGCATGCAGAGGGGGACGGAGCCGATCCTCAGCTTGCGCATTATGCCT
261 ATGGCAGTGGGACCAGCAGCACACAGAGGGGGACGGAGCCGATCCTCAGCTTACGCATTATGCCT
* *
12522309 CTTCGGTCGGCTCAGCG
326 CTTCGATCGGCTCAGCA
* *
12522326 CCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATTTAAGCATACGAA
1 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATTTAAGCATACGAA
* * ** **
12522391 GTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGACAGCAGGATCGGTAGCACGCAGG
66 GTTAATTCACAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGG
* * * * ** * * *
12522456 GTAGATC-GAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGACTAAGCGCCCACACGCT
131 GGAGACCAG-GCCGATCCCCGACTTGCACATTCTACCTCTCCAATCGACTAAGCACCCACACACC
* * * *
12522520 CGTTTCATGTGTTGGTTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGG
195 CGTTTCATGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTC-AAGCCCCAACCGAACCAAGGG
* *
12522585 TTATGGCAGTGGGACC-GACAGTACACAGAGGGGGACCGG-GCCGATCCTCGGCTTACGCATTAT
259 TTATGGCAGTGGGACCAG-CAGCACACAGAGGGGGA-CGGAGCCGATCCTCAGCTTACGCATTAT
12522648 GCCTCTTCGATCGGCTCAGCA
322 GCCTCTTCGATCGGCTCAGCA
* ** * *
12522669 CCCGCACGTTCATTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCCA
1 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
12522719 GTCTAAGATA
Statistics
Matches: 331, Mismatches: 58, Indels: 7
0.84 0.15 0.02
Matches are distributed among these distances:
341 1 0.00
342 197 0.60
343 130 0.39
344 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (342 bp):
CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATTTAAGCATACGAA
GTTAATTCACAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGG
GGAGACCAGGCCGATCCCCGACTTGCACATTCTACCTCTCCAATCGACTAAGCACCCACACACCC
GTTTCATGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCAAGCCCCAACCGAACCAAGGGTT
ATGGCAGTGGGACCAGCAGCACACAGAGGGGGACGGAGCCGATCCTCAGCTTACGCATTATGCCT
CTTCGATCGGCTCAGCA
Found at i:12523183 original size:26 final size:26
Alignment explanation
Indices: 12523154--12523203 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
12523144 GACTTAGGCA
12523154 TACGGAGTTCATCCCCAGTCTAAGCT
1 TACGGAGTTCATCCCCAGTCTAAGCT
*
12523180 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
12523204 ATCGGACCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCT
Found at i:12523522 original size:26 final size:26
Alignment explanation
Indices: 12523492--12523544 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12523482 GTTGACTTAG
*
12523492 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12523518 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12523544 G
1 G
12523545 ATCGAAATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12523972 original size:342 final size:343
Alignment explanation
Indices: 12523460--12524196 Score: 926
Period size: 342 Copynumber: 2.1 Consensus size: 343
12523450 ACCGACTGAG
** * *
12523460 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCATTCTAAGCATACG
1 CGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATACG
* * * * **
12523525 GAGTTCATTCCCAGTCTAAGATCGAAATGGATCGAGGGTTACGACAGCAGGATCGGTAGCACGCA
66 GAGTTCATTCCCAGTCTAAGATCGAAACGGACCGAGGGTCACAACAGCAGGATCGACAGCACGCA
* * * * * *
12523590 GGAGGGACCGGGCTGATCCCCATCTTGCGCATTCTGCCTCTCTTGCT-GGCTGAGTGCCCGAATG
131 GGAGGGACCGAGCCGATCCCCATCTTGCGCATTCTGCCTCT-TCGATCGACTGAGCGCCCGAATG
* * * * * *
12523654 CCCGTTTGATGGTTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAG
195 CCCGTTTCATGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAG
* * * * ** *
12523719 GGTTGTGGCAGCGGGACCGATAGCATGCAGAGGGGGACCGAGCCGAT-CCTCGGCTTGCGTATTA
260 GGTTGTGGCAACGGGACCGACAGCACGCAGAGGGGGACCGAGCCAATCCCT-AACTTGCGCATTA
** * *
12523783 TGCCTCTTTGACTGGCTCAG
324 TGCCTCTTCCACCGGCTCAC
* * * * * *
12523803 TGCCCGTACGCTTGTTTTGTGGGTTGACTTAGGCATACAGAGTTCAT-CCAAGTCTAAGTATATG
1 CGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATACG
* * * * * *
12523867 GAGTTCATTCCTAGTCTAAGATTGGACCGGACCGAGGGTCGCAACAGCAGGATCGACAGCACGGA
66 GAGTTCATTCCCAGTCTAAGATCGAAACGGACCGAGGGTCACAACAGCAGGATCGACAGCACGCA
* * *
12523932 GG-GCGGACTGAGCCGATCCCCGA-CTTGCGCATTTTGCCTCTTCGATCGACTGAGCGCCCGTAT
131 GGAG-GGACCGAGCCGATCCCC-ATCTTGCGCATTCTGCCTCTTCGATCGACTGAGCGCCCGAAT
12523995 GCCCGTTTCATGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGA
194 GCCCGTTTCATGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGA
* *
12524060 GGGTTGTGGCAACGGGACCGACAGCACGCAGAGGGGGACCGGGCTAATCCCTAACTTGCGCATTA
259 GGGTTGTGGCAACGGGACCGACAGCACGCAGAGGGGGACCGAGCCAATCCCTAACTTGCGCATTA
*
12524125 TGCCTCTTCCACCGGTTCAC
324 TGCCTCTTCCACCGGCTCAC
*
12524145 CGCCCGCACGCTCGTTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCCA
1 CGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCA-TCCCA
12524197 GTCCAAGATT
Statistics
Matches: 332, Mismatches: 56, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
341 4 0.01
342 279 0.84
343 46 0.14
344 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (343 bp):
CGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATACG
GAGTTCATTCCCAGTCTAAGATCGAAACGGACCGAGGGTCACAACAGCAGGATCGACAGCACGCA
GGAGGGACCGAGCCGATCCCCATCTTGCGCATTCTGCCTCTTCGATCGACTGAGCGCCCGAATGC
CCGTTTCATGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGG
GTTGTGGCAACGGGACCGACAGCACGCAGAGGGGGACCGAGCCAATCCCTAACTTGCGCATTATG
CCTCTTCCACCGGCTCAC
Found at i:12524168 original size:159 final size:158
Alignment explanation
Indices: 12524005--12524362 Score: 364
Period size: 158 Copynumber: 2.3 Consensus size: 158
12523995 GCCCGTTTCA
* **
12524005 TGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGC
1 TGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAACCAAACCGAGGGTTGCAGC
* * * *
12524070 AACGGGACCGACAGCACGCAGAGGGGGACCGGGCTAATCCCTAACTTGCGCATTATGCCTCTTCC
66 AACAGGACCGACAGCACACAG-GGGGGACCAGGCTAATCCCCAACTTGCGCATTATGCCTC-TCC
* * *
12524135 -ACCGGTTCACCGCCCGCACGCTCGTTTTG
129 GACCGGCTAACCGCCCACACGCTCGTTTTG
* * * *****
12524164 TGGGTTGACTTATGCATA-CGGAGTTCATTCCCA-GTCCAAGATTGGACCAAACCGAGGGTTGCA
1 TGGGTTGGCTTAGGCATAGC-GAGTTCATT-CCATGTCTAAGCCCCAACCAAACCGAGGGTTGCA
* ** * * * ** * *
12524227 GCAGCAGGATTGATAGCATACAGGGGGGACCAGGTTAATCCCCGGCTTGCGTATTCTGCCTCTCC
64 GCAACAGGACCGACAGCACACAGGGGGGACCAGGCTAATCCCCAACTTGCGCATTATGCCTCTCC
* * *
12524292 GGCCTGCTAAGCGCCCACACGCTCGTTTTG
129 GACCGGCTAACCGCCCACACGCTCGTTTTG
12524322 TGGGTTGGCTTAGGCATATG-GAGTTCATTCCATGTCTAAGC
1 TGGGTTGGCTTAGGCATA-GCGAGTTCATTCCATGTCTAAGC
12524363 ATAAGGAGTT
Statistics
Matches: 158, Mismatches: 35, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
157 6 0.04
158 87 0.55
159 62 0.39
160 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (158 bp):
TGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAACCAAACCGAGGGTTGCAGC
AACAGGACCGACAGCACACAGGGGGGACCAGGCTAATCCCCAACTTGCGCATTATGCCTCTCCGA
CCGGCTAACCGCCCACACGCTCGTTTTG
Found at i:12524371 original size:26 final size:26
Alignment explanation
Indices: 12524335--12524387 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12524325 GTTGGCTTAG
*
12524335 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
12524361 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
12524387 G
1 G
12524388 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:12525087 original size:26 final size:26
Alignment explanation
Indices: 12525058--12525110 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12525048 GTTGACTTAG
*
12525058 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
12525084 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12525110 G
1 G
12525111 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12525748 original size:343 final size:341
Alignment explanation
Indices: 12525242--12526615 Score: 1218
Period size: 343 Copynumber: 4.0 Consensus size: 341
12525232 GTTGGCTTAG
* ** * * * * *
12525242 GCATACAGAGTTCATT-TCATGTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGC-GAGATCTG
1 GCATACAGAGTTCATTCCCA-GTCTAAGATCGAACCGGACCGAGGGTTGCGGCAACAG-GATCGG
* * * ** * * *
12525305 CAGCACGCAGAGAAGGACCGAGTCAATCCCCGGCTTGTGCATTAC-GCCTTTCCGGTCGGCTCAG
64 CAGCACGCAGAGGAGGACCGAGCCGATCCCCGGCTTACGCATT-CTGCCTCTCCGGCCGGCTGAG
* * * *
12525369 TGCCCGCACGCTC-GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCTCA-GTCTAAGATCA
128 CGCCCGCACGC-CAGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTC-CATGTCTAAGACCA
** * * * * *
12525432 GATCGGACTGAGGGTTGCAGCAGCAGGATTGACAGAACGTAGGGGGGATCGGGTCGCTCCTCGGC
191 G-TCGGACTGAGGGTTGTGGCAGCAGGACTGGCAGCACGAAGGGGGGATCGGG-CGATCCTCGGC
* * * *
12525497 TTGCGCATTCTGCCTCTCTGGCCAACTGAGTGCCCGTACGCTCATTTCATGGGTTGGCTTAGGGA
254 TTGCGCATTATGCCTCTCTGGCCAGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCA
* * *
12525562 GACGGAGTTCAT-TCCATGTTTAA
319 TACGGAGTTCATCCCCA-GTCTAA
* * *
12525585 GCATACAGAGTTCATTCCTAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAATAGGATCGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAACAGGATCGGCA
* * * *
12525650 GCACGCAGGGGAGGACCAAGTCGATCCCCGACTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGC
66 GCACGCAGAGGAGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGC
* * * * *
12525715 CTGCATGCCCGCTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGTCG
131 CCGCACGCCAGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGA-CCAGTCG
* * * * * * *
12525780 GACCGAGGGTTATGGCAGCAAGACTGGCAGCGCGCAAAGGGGGATCGGGCTGATCCCCGACTTGC
195 GACTGAGGGTTGTGGCAGCAGGACTGGCAGCACG-AAGGGGGGATCGGGC-GATCCTCGGCTTGC
* * * * * *
12525845 ACATTATGCCTCTCCGACCAGCTGAGCGCCCGTACGCTCATTTTGTGGGTTAAG-TTAGGCATAC
258 GCATTATGCCTCTCTGGCCAGCTGAGTGCCCGTACGCTCATTTCGTGGGTT-GGCTTAGGCATAC
12525909 GGAGTTCATCCCCAGTCTAA
322 GGAGTTCATCCCCAGTCTAA
* * * * * * *
12525929 GCATAC-GAAGTTCATTCCCAGTCTAAGATCGAACCGGTCTGATGGTTACGGTAGCAGGATCGAC
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAACAGGATCGGC
* * * * * * * *
12525993 AGCATGCAAAAG-GGACCG-GACCGATCTCCGGTTTACGCATTCTGCCTCTCCGACCGGTTGAGT
65 AGCACGCAGAGGAGGACCGAG-CCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGC
* * *
12526056 GCCCGCATGCCAGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
129 GCCCGCACGCCAGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-ACCAGT
* * * * * *
12526121 CAGA-TCGAGGGTTGTGGCAGCGGGACTGGCAGCATGCAGAGGGGGG-CCAGGCCGATCCTTGGC
193 CGGACT-GAGGGTTGTGGCAGCAGGACTGGCAGCACG-A-AGGGGGGATC-GGGCGATCCTCGGC
* * * * * *** * *
12526184 TTGCGCATTATGCCT-TTTCAGTCGGCTCAGTGCCCGTACGCTTGCTCCGTGGGTTGACTTAGGC
254 TTGCGCATTATGCCTCTCT-GGCCAGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGC
* *
12526248 ATACAGAGTTCATCCCCAATCTAA
318 ATACGGAGTTCATCCCCAGTCTAA
* * * * * *
12526272 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGAGTTGCGACAGCAGGATCGGTA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAACAGGATCGGCA
* * * * * *
12526337 GCAGGGAG-GGCA-GACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCG
66 GCACGCAGAGG-AGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCG
* * * * *
12526400 CCCGCACGCCAATTTCGTGGGTTGGCTTAGGCATAGGGAGATCATTCCATGTCTAAGCCCCAGCC
130 CCCGCACGCCAGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-ACCAGTC
* * * * *
12526465 AGACCGAGGGTTGTGGCAGCAAGACTGGCAGCAC-ACAGAGGGGGACCGAGCCGATCCTCGGCTT
194 GGACTGAGGGTTGTGGCAGCAGGACTGGCAGCACGA-AG-GGGGGATCG-GGCGATCCTCGGCTT
* * * * * * ** * *
12526529 GCGCATTATGCCTCT-TCAGTCGGCTCAGCT-CCCGCACGCTCGTTTTATGGGTTGACTTATGCA
256 GCGCATTATGCCTCTCT-GGCCAGCTGAG-TGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCA
* *
12526592 TACAGAGTTCATTCCCAGTCTAA
319 TACGGAGTTCATCCCCAGTCTAA
12526615 G
1 G
12526616 ATCAAACTGA
Statistics
Matches: 848, Mismatches: 155, Indels: 56
0.80 0.15 0.05
Matches are distributed among these distances:
341 3 0.00
342 13 0.02
343 662 0.78
344 166 0.20
345 4 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (341 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAACAGGATCGGCA
GCACGCAGAGGAGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGC
CCGCACGCCAGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCAGTCGG
ACTGAGGGTTGTGGCAGCAGGACTGGCAGCACGAAGGGGGGATCGGGCGATCCTCGGCTTGCGCA
TTATGCCTCTCTGGCCAGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAG
TTCATCCCCAGTCTAA
Found at i:12525932 original size:26 final size:26
Alignment explanation
Indices: 12525903--12525955 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12525893 GTTAAGTTAG
*
12525903 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
12525929 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12525955 G
1 G
12525956 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12526246 original size:159 final size:159
Alignment explanation
Indices: 12526074--12526774 Score: 457
Period size: 159 Copynumber: 4.3 Consensus size: 159
12526064 GCCAGTTTCA
* * *
12526074 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGC
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGC
* * * ** *
12526139 AGCGGGACTGGCAGCATGCAGAGGGGGGCC-AGGCCGATCCTTGGCTTGCGCATTATGCCTTTTC
66 AGCAGGACTGGCAGCATACAGAGGGGGACCGA-GCCGATCCCCGGCTTGCGCATTATGCCTCTTC
* * * *
12526203 AGTCGGCTCAGTGCCCGTACGCTTGCTCCG
130 AGTCGGCTCAGCGCCCGCACGCTCGTTCCG
* * * ** * ** * **
12526233 TGGGTTGACTTAGGCATACAGAGTTCATCCCCA-ATCTAAGCATACGGAGTTCATTCCCAGTCTA
1 TGGGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAGC---CCCAG-CCAGACCGAGGGT-
* * * * * * * * *
12526297 AGATCGAACCGGACTGAGAGTTGCGACAGCAGGATCGGTAGCAGGGAGGGCAGACCGAGCCGATC
60 TG-T-G--GCAG-CAG-GA-CTG-G-CAGCA-TA-C---AG-AGGG-GGACCGA--GC--CGATC
* * * * * *
12526362 CCTGGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCGCCCGCACGC-CAATTTCG
105 CCCGGCTTGCGCATTATGCCTCTTCAGTCGGCTCAGCGCCCGCACGCTC-GTTCCG
* * *
12526417 TGGGTTGGCTTAGGCATAGGGAGATCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGC
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGC
* * *
12526482 AGCAAGACTGGCAGCACACAGAGGGGGACCGAGCCGATCCTCGGCTTGCGCATTATGCCTCTTCA
66 AGCAGGACTGGCAGCATACAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTTCA
* ***
12526547 GTCGGCTCAGCTCCCGCACGCTCGTTTTA
131 GTCGGCTCAGCGCCCGCACGCTCGTTCCG
* * ** ** *
12526576 TGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAAACTGAACCGAGGGTTGTG
1 TGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAGCCAG-ACCGAGGGTTGTG
* * * * * *
12526639 GTAGTAGGATTGACAGCATACA-AGGGGGACC-AGGCTGATCCCCGGCTTGCGCATTCTGCCTC-
64 GCAGCAGGACTGGCAGCATACAGAGGGGGACCGA-GCCGATCCCCGGCTTGCGCATTATGCCTCT
* * *
12526701 TCCGACCGGCTGAGCGCCCGCACGCTCGTTCCG
128 TCAG-TCGGCTCAGCGCCCGCACGCTCGTTCCG
12526734 TGGGTT-AGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 TGGGTTGA-CTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12526775 ATACGGAGTT
Statistics
Matches: 410, Mismatches: 96, Indels: 72
0.71 0.17 0.12
Matches are distributed among these distances:
157 8 0.02
158 93 0.23
159 141 0.34
160 7 0.02
161 1 0.00
162 3 0.01
163 11 0.03
164 5 0.01
165 3 0.01
166 1 0.00
168 3 0.01
169 3 0.01
170 7 0.02
171 3 0.01
172 3 0.01
173 7 0.02
174 1 0.00
175 3 0.01
177 1 0.00
178 3 0.01
179 5 0.01
180 11 0.03
181 4 0.01
182 1 0.00
183 3 0.01
184 79 0.19
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
TGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGC
AGCAGGACTGGCAGCATACAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTTCA
GTCGGCTCAGCGCCCGCACGCTCGTTCCG
Found at i:12526282 original size:26 final size:26
Alignment explanation
Indices: 12526246--12526298 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12526236 GTTGACTTAG
12526246 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* * *
12526272 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
12526298 G
1 G
12526299 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:12526776 original size:26 final size:26
Alignment explanation
Indices: 12526747--12526799 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12526737 GTTAGCTTAG
12526747 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12526773 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12526799 G
1 G
12526800 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12527017 original size:13 final size:12
Alignment explanation
Indices: 12526983--12527018 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
12526973 GTGCTGGTAC
*
12526983 TTGGCCCTTACA
1 TTGGCCCTTATA
12526995 TTGGCCCTTATA
1 TTGGCCCTTATA
12527007 TTGGCCCCTTAT
1 TTGG-CCCTTAT
12527019 CCCTCATCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 15 0.68
13 7 0.32
ACGTcount: A:0.14, C:0.31, G:0.17, T:0.39
Consensus pattern (12 bp):
TTGGCCCTTATA
Found at i:12527522 original size:26 final size:26
Alignment explanation
Indices: 12527492--12527544 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12527482 GTTGACTTAG
12527492 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
12527518 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12527544 G
1 G
12527545 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12527871 original size:159 final size:159
Alignment explanation
Indices: 12527518--12528003 Score: 373
Period size: 159 Copynumber: 3.1 Consensus size: 159
12527508 CCCAGTCTAA
* * * * *
12527518 GCATACGGAGTTCATTCCTAGTCTAAGATCGAATCGGATCGAGGGTT--GTAGCAGCAGGATCGA
1 GCATACGAAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTACG-A-CAGCAGGATCGA
* ** * * * *
12527581 CAGCACGCAG-GCAGGACCGGGCCGATCCCCAGCTTGCGCATTCTG---AT-C-G-G-T-TGAGC
64 CAACACGCAGAGGGGGACCAGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCAGCGCTCAGAGC
* *
12527637 GC-CTGCATGC-CTGTTTCATGGGTTGGCTTAG
129 GCTC-GCACGCTC-GTTTCATGGGTTGACTTAG
* * ** * * * ** *
12527668 GCATAC-AGAGTTCATTCC-ATGTCTATG-CCCTAGCCGGACTGAGGGTTATGGTAGCGGGATCG
1 GCATACGA-AGTTCATTCCTA-GTCTAAGATCGGA-CCAGACCGAGGGTTACGACAGCAGGATCG
* * *
12527730 ACAACACGCAGAGGGGGACCAGGCTGGTCCCCGGCTTGTGCATTAC-GCCTCTCC-GACTGGCTC
63 ACAACACGCAGAGGGGGACCAGGCTGATCCCCAGCTTGCGCATT-CTGCCTCTCCAG-C--GCTC
* *
12527793 AGTGC-C-CGCACGCTCGTTTCGTGGGTTGACTTAG
124 AGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAG
* * *
12527827 GCATACGAAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGTAGGATCTACA
1 GCATACGAAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCAGGATCGACA
* * * *
12527892 GCATGCAGGGGGGGACCAGGTTGATCCCCAGCTTGCGCATTCTGCCTCTCCAGCGCTCAGAGCGC
66 ACACGCAGAGGGGGACCAGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCAGCGCTCAGAGCGC
* *
12527957 TTGCACGCTCGTTTCATGGGTTGGCTTAG
131 TCGCACGCTCGTTTCATGGGTTGACTTAG
* *
12527986 GCATATGGAGTTCATTCC
1 GCATACGAAGTTCATTCC
12528004 ATGTTTAAGC
Statistics
Matches: 260, Mismatches: 51, Indels: 41
0.74 0.14 0.12
Matches are distributed among these distances:
149 3 0.01
150 52 0.20
151 26 0.10
152 2 0.01
154 1 0.00
155 2 0.01
157 8 0.03
158 2 0.01
159 152 0.58
160 9 0.03
161 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATACGAAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCAGGATCGACA
ACACGCAGAGGGGGACCAGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCAGCGCTCAGAGCGC
TCGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:12528247 original size:26 final size:26
Alignment explanation
Indices: 12528211--12528260 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
12528201 GGCTTAGGCG
*
12528211 TACGGTGTTCATT-CCATGTCTAAGCA
1 TACGGAGTTCATTCCCA-GTCTAAGCA
12528237 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
12528261 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:12529421 original size:158 final size:156
Alignment explanation
Indices: 12528966--12529459 Score: 501
Period size: 158 Copynumber: 3.1 Consensus size: 156
12528956 AAGCATACAA
* * * *
12528966 AGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTACGATAGTCGGATCTGTAGCACGCAG
1 AGTTCATTCCTAGTCTAAGATCGAACCGGATCGAGGGTTGCGGTAG-CGGATCTGCAGCACGCAG
* ** * * * * *
12529031 GAGGGACCGGGTCGATCCTTGGCTTGCGCATTCTACCTCTCCAGTCGGTTGAGCGCCCGCACGCC
65 GGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCACT-GGCTGAGCGCCCGCACGCT
*
12529096 CGTTTCGTGGGTTGGCTTAGGCATAGGG
129 CGTTTCGTGGGTTGGCTTAGGCATACGG
* ** * * * * * * *
12529124 AGTTCATTCCTTGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCGGGA-CTGGCAGCATGCA
1 AGTTCATTCCTAGTCTAAGATCGAACCGGATCGAGGGTTGCGGTAGC-GGATCT-GCAGCACGCA
* * * * ** * *
12529188 GAAGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCTAGCCAGCTCAGCACCCGCACG
64 G-GGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCA-CTGGCTGAGCGCCCGCACG
*
12529253 CTCGTTTCGTGGGTTGACTTAGGCATACGG
127 CTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * * * * *
12529283 TGTTCATTCCTAGTCTAAGATTGGACCAGATTGAGGGTTGCGGTAGCAGGATC-GACAGCACGTA
1 AGTTCATTCCTAGTCTAAGATCGAACCGGATCGAGGGTTGCGGTAGC-GGATCTG-CAGCACGCA
* *
12529347 GGGGGGACCGGGTC-AGTCCCCGGCTTGTGCATTCTGCCTCTTCGACTGGCTGAGTGCCCGCACG
64 GGGGGGACCGGGTCGA-TCCCCGGCTTGTGCATTCTGCCTC-TCCACTGGCTGAGCGCCCGCACG
12529411 CTCGTTTCGTGGGTTGGCTTAGGCATACGG
127 CTCGTTTCGTGGGTTGGCTTAGGCATACGG
12529441 AGTTCATTCC-ATGTCTAAG
1 AGTTCATTCCTA-GTCTAAG
12529460 CATACGGAGT
Statistics
Matches: 267, Mismatches: 60, Indels: 18
0.77 0.17 0.05
Matches are distributed among these distances:
157 5 0.02
158 140 0.52
159 121 0.45
160 1 0.00
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.24
Consensus pattern (156 bp):
AGTTCATTCCTAGTCTAAGATCGAACCGGATCGAGGGTTGCGGTAGCGGATCTGCAGCACGCAGG
GGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCACTGGCTGAGCGCCCGCACGCTCG
TTTCGTGGGTTGGCTTAGGCATACGG
Done.