Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 85 of 402
Found at i:12529483 original size:26 final size:26
Alignment explanation
Indices: 12529433--12529485 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12529423 GTTGGCTTAG
*
12529433 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
12529459 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
12529485 G
1 G
12529486 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:12529814 original size:171 final size:170
Alignment explanation
Indices: 12529495--12529814 Score: 442
Period size: 171 Copynumber: 1.9 Consensus size: 170
12529485 GATCAAACTG
**
12529495 GACCGAGGGTTGCGACAGTAGGACCAGCAGTAGGATCGGCAGCACGTAGGGGGGATCGGGCCGAT
1 GACCGAGGGTTGCGACAGTAGGACCAGCAACAGGATCGGCAGCACGTAGGGGGGATCGGGCCGAT
* * ** * *
12529560 CCCCGACTTGCGCATTCTGCCTCTCTGGCCGACTGAGCACCCACACCCTCGTTTCGTGGGTTGGC
66 CCCCGACTTACGCATTATGCCTCTCCAGCCGACAGAGCACCCACACCCTCGTTTCGTGGGTTGAC
*
12529625 TTAGGCAAACGGAGTTCATTCCATGTCTAAGCCCTAGCCA
131 TTAGGCAAACGAAGTTCATTCCATGTCTAAGCCCTAGCCA
* * * * * *
12529665 GACCGAGGTTTGTGGCAGTAGGACCGGCAACGGGATCGGCAGCACGTAGAGGGGGATCGGGCTGA
1 GACCGAGGGTTGCGACAGTAGGACCAGCAACAGGATCGGCAGCACGTAG-GGGGGATCGGGCCGA
* * * *
12529730 TCCCCGGCTTACGCATTATGCCTCTCCAGCCGACAGAGCCCCCGCACGCTCGTTTCGTGGGTTGA
65 TCCCCGACTTACGCATTATGCCTCTCCAGCCGACAGAGCACCCACACCCTCGTTTCGTGGGTTGA
* *
12529795 CTTCGGCATACGAAGTTCAT
130 CTTAGGCAAACGAAGTTCAT
12529815 CCCCAATCTA
Statistics
Matches: 128, Mismatches: 21, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
170 42 0.33
171 86 0.67
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (170 bp):
GACCGAGGGTTGCGACAGTAGGACCAGCAACAGGATCGGCAGCACGTAGGGGGGATCGGGCCGAT
CCCCGACTTACGCATTATGCCTCTCCAGCCGACAGAGCACCCACACCCTCGTTTCGTGGGTTGAC
TTAGGCAAACGAAGTTCATTCCATGTCTAAGCCCTAGCCA
Found at i:12529827 original size:171 final size:169
Alignment explanation
Indices: 12529459--12529827 Score: 441
Period size: 171 Copynumber: 2.2 Consensus size: 169
12529449 CCATGTCTAA
** **
12529459 GCATACGGAGTTCATTCCCAATCTAAGATCAAACTGGACCGAGGGTTGCGACAGTAGGACCAGCA
1 GCATACGGAGTTCA-TCCCAATCTAAGCCCAAACCAGACCGAGGGTTGCGACAGTAGGACCAGCA
** * * **
12529524 GTAGGATCGGCAGCACGTAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCTGGC
65 ACAGGATCGGCAGCACGTAGGGGGGATCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCAGC
* *
12529589 CGACTGAGCACCCACACCCTCGTTTCGTGGGTTGGCTTAG
130 CGACAGAGCACCCACACCCTCGTTTCGTGGGTTGACTTAG
* * * * * * * * *
12529629 GCAAACGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGTTTGTGGCAGTAGGACCGGCA
1 GCATACGGAGTTCATCCCA-ATCTAAGCCCAAACCAGACCGAGGGTTGCGACAGTAGGACCAGCA
* * *
12529694 ACGGGATCGGCAGCACGTAGAGGGGGATCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCAG
65 ACAGGATCGGCAGCACGTAG-GGGGGATCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCAG
* * * *
12529759 CCGACAGAGCCCCCGCACGCTCGTTTCGTGGGTTGACTTCG
129 CCGACAGAGCACCCACACCCTCGTTTCGTGGGTTGACTTAG
*
12529800 GCATACGAAGTTCATCCCCAATCTAAGC
1 GCATACGGAGTTCAT-CCCAATCTAAGC
12529828 ATACGAAGTT
Statistics
Matches: 164, Mismatches: 32, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
169 4 0.02
170 64 0.39
171 93 0.57
172 3 0.02
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (169 bp):
GCATACGGAGTTCATCCCAATCTAAGCCCAAACCAGACCGAGGGTTGCGACAGTAGGACCAGCAA
CAGGATCGGCAGCACGTAGGGGGGATCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCAGCC
GACAGAGCACCCACACCCTCGTTTCGTGGGTTGACTTAG
Found at i:12529836 original size:26 final size:26
Alignment explanation
Indices: 12529800--12529852 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12529790 GTTGACTTCG
12529800 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
12529826 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
12529852 G
1 G
12529853 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:12530291 original size:158 final size:157
Alignment explanation
Indices: 12529826--12530327 Score: 498
Period size: 158 Copynumber: 3.2 Consensus size: 157
12529816 CCCAATCTAA
* * *
12529826 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAAGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAAGGTTGTGGCAGCAGGATCGACA
* * * *
12529891 GCACGCAAGGGGGA-TCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGCTC-GACTGAGCA
66 GCATGTAGGGGGGACT-GGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGC-CAG-CTGAGCA
*
12529954 CCCGCACGCCCATTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * *
12529984 GCATAGGGAGTTCATT-CCATGTCTAAG-TCCCAG-TCGGACCGATGGTTGTGGCGGC-GAGACC
1 GCATACGGAGTTCATTCCCA-GTCTAAGAT--CAGATCGGACCGAAGGTTGTGGCAGCAG-GATC
* * * * * * *
12530045 GGCAGCATGCT-GAGGGGGACCGAGCTGAT-CCTCGGCTTGCGCATTATGCCTCTTCGGCAGGCT
62 GACAGCATG-TAG-GGGGGACTGGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGCCA-GCT
* * * * * * *
12530108 CAACGCCCGCATGCTCGTTTCGTGGGTTGACTTAT
123 GAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * * * * *
12530143 GCATATGGAGTTTATTCCCAGTGTAAGATCAGACCGAACCGAGGGTTGCGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAAGGTTGTGGCAGCAGGATCGACA
*
12530208 GCATGTAGGGGGGACTGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCAGCCAGCTGAGCACC
66 GCATGTAGGGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCC-GCCAGCTGAGCACC
12530273 CGCACGCTCATTTCGTGGGTTGGCTTAG
130 CGCACGCTCATTTCGTGGGTTGGCTTAG
**
12530301 GCATACGGAGTTCATTCCTTGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
12530328 CATACGGAGT
Statistics
Matches: 270, Mismatches: 57, Indels: 34
0.75 0.16 0.09
Matches are distributed among these distances:
157 5 0.02
158 142 0.53
159 117 0.43
160 6 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAAGGTTGTGGCAGCAGGATCGACA
GCATGTAGGGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGCCAGCTGAGCACCC
GCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:12530337 original size:26 final size:26
Alignment explanation
Indices: 12530301--12530353 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12530291 GTTGGCTTAG
**
12530301 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12530327 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12530353 G
1 G
12530354 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12531050 original size:26 final size:26
Alignment explanation
Indices: 12531021--12531073 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12531011 GTTGACTTAG
12531021 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12531047 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12531073 G
1 G
12531074 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12532293 original size:169 final size:169
Alignment explanation
Indices: 12531880--12532312 Score: 399
Period size: 169 Copynumber: 2.6 Consensus size: 169
12531870 CCTCTACGGT
* * * * * *
12531880 CGACTCAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTA
1 CGACTCAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCGA
* * * * * ***
12531945 AGATCAGATCGGACCGAGGG-T----T-GC--G-GCAGTA--GAATCGATAGCACACAGGGGGGA
66 AGACCAGACCGGACCGAGGGTTACGGTAGCAAGACCAGTAGCGGATCGGTAGCATGTAGGGGGGA
* *
12531999 CTAGGCCGATCCTCAGCTTACACATTCTACCTCTCCAGC
131 CTAGGCCGATCCCCAGCTTACACATTCTAACTCTCCAGC
* * *
12532038 CGACTCAACGCCCGCATGCTCGTTTCGTGGGTTGGCTTATGCATACGGAGTTCATTCCCAGTCGA
1 CGACTCAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCGA
* * * *
12532103 AGATCAGACTGGTCTGAGGGTTACGGTAGCAAGACCAGTAGCGGATCGGTAGCATGTAGGGGGGA
66 AGACCAGACCGGACCGAGGGTTACGGTAGCAAGACCAGTAGCGGATCGGTAGCATGTAGGGGGGA
* * *
12532168 CT-GAGCTGATCCCCAGCTTACGCATTCTAACTCTCCGGC
131 CTAG-GCCGATCCCCAGCTTACACATTCTAACTCTCCAGC
* * * * * * * *
12532207 TGGCTGAGCGCTCGCACGCTCGTTTTATGGGTTGGCTTAGGCATATGGAGTTCATT-CCATGTCT
1 CGACTCAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCG
* ** *
12532271 AAGCCCCAG-CCGGACCGAGGGTTGTGGTAGCAGGACCAGTAG
65 AAG-ACCAGACCGGACCGAGGGTTACGGTAGCAAGACCAGTAG
12532313 AGGGATCGAC
Statistics
Matches: 220, Mismatches: 41, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
158 74 0.34
159 1 0.00
163 1 0.00
164 2 0.01
166 1 0.00
167 5 0.02
168 4 0.02
169 129 0.59
170 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (169 bp):
CGACTCAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCGA
AGACCAGACCGGACCGAGGGTTACGGTAGCAAGACCAGTAGCGGATCGGTAGCATGTAGGGGGGA
CTAGGCCGATCCCCAGCTTACACATTCTAACTCTCCAGC
Found at i:12532821 original size:159 final size:155
Alignment explanation
Indices: 12532466--12532958 Score: 450
Period size: 159 Copynumber: 3.1 Consensus size: 155
12532456 GCATATGGAA
* * * *
12532466 TTCATTTCCAATCTAAGATCAGATCGGACCGAGGGTTATGACAGCAAGATCGACAGCACGCAGTG
1 TTCA-TTCCAGTCTAAGATCAGATCGGA-CGAGGGTTGTGGCAGC-AGATCGACAGCACGCAGGG
* * * *
12532531 AGGACCGAGCTAATCCCCGGCTTGCACATTCTGCCTCTTCGGCCGGCTGAACGCCCACACGCCCG
63 GGGACCGAGCTGATCCCCGGCTTGCACATTATGCCTCTTCGGCCGGCTCAACGCCCACACGCCCG
* **
12532596 TTTCATGGGTTGGCTTAGGCATAGGGAG
128 TTTCATGGGTTGACTTAGGCATACAGAG
** * * **
12532624 TTCATTCCATGTCTAAGCCCCAG-TCGGACTGAAGGTTGTGGTAGCGAGATCGGTAGCACGCAGA
1 TTCATTCCA-GTCTAAG-ATCAGATCGGAC-GAGGGTTGTGGCAGC-AGATCGACAGCACGCAG-
* * * * *
12532688 GGGGGACCGAGCTGATCCTCGGCTTGCACATTATGCCTCTTCGGTCGGCTCAATGCCCGCACGCT
61 GGGGGACCGAGCTGATCCCCGGCTTGCACATTATGCCTCTTCGGCCGGCTCAACGCCCACACGCC
*
12532753 CGTTTCATGGGTTGACTTATGCATACAGAG
126 CGTTTCATGGGTTGACTTAGGCATACAGAG
** *
12532783 TTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGGG
1 TTCATT-CCAGTCTAAGATCAGATCGGA-CGAGGGTTGTGGCAGCA-GATCGACAGCACGCAGGG
* * ** * * * * * ** *
12532848 GGAGACCGAGCCGATCCCCGACTTGCGTATTCTACCTCTCCGACCAGCT-AAGCGCCTGCACGCT
63 GG-GACCGAGCTGATCCCCGGCTTGCACATTATGCCTCTTCGGCCGGCTCAA-CGCCCACACGCC
** * * * *
12532912 CGTTTTGTTGGTTGGCTTGGGCATACGGAG
126 CGTTTCATGGGTTGACTTAGGCATACAGAG
12532942 TTCATTCCATGTCTAAG
1 TTCATTCCA-GTCTAAG
12532959 CATACAGAGT
Statistics
Matches: 271, Mismatches: 53, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
157 6 0.02
158 52 0.19
159 209 0.77
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (155 bp):
TTCATTCCAGTCTAAGATCAGATCGGACGAGGGTTGTGGCAGCAGATCGACAGCACGCAGGGGGG
ACCGAGCTGATCCCCGGCTTGCACATTATGCCTCTTCGGCCGGCTCAACGCCCACACGCCCGTTT
CATGGGTTGACTTAGGCATACAGAG
Found at i:12532968 original size:26 final size:26
Alignment explanation
Indices: 12532932--12532984 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12532922 GTTGGCTTGG
*
12532932 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
12532958 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
12532984 G
1 G
12532985 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:12533697 original size:26 final size:26
Alignment explanation
Indices: 12533668--12533720 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12533658 GTTGACTTAG
12533668 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12533694 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12533720 G
1 G
12533721 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12534940 original size:170 final size:170
Alignment explanation
Indices: 12534687--12534998 Score: 387
Period size: 170 Copynumber: 1.8 Consensus size: 170
12534677 CTCCAGCCGA
* *
12534687 CTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCGAAGA
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCGAAGA
* * * * * * * *
12534752 TCAGACTGGTCTGAGGGTTACGGCAGCAGGACCAGTAGCA-GGATCGATAGCATGTAGGGGGGAT
66 CCAGACCGGACCGAGGGTTACGGCAGCAGGACCAGTAG-AGGGATCGACAGCACGCAAGGGGGAT
*
12534816 TGAGCTGATCCCCAGCTTACGCATTCTAACTCTCCGGCTGG
130 CGAGCTGATCCCCAGCTTACGCATTCTAACTCTCCGGCTGG
* * * * *
12534857 CTGAGCGCTCGCACGCTCGTTTTATGGGTTGGCTTAGGCATATGGAGTTCATT-CCATGTCTAAG
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-ATCGAAG
* ** *
12534921 CCCCAG-CCGGACCGAGGGTTGTGGTAGCAGGACCAGTAGAGGGATCGACAGCACGCAAGGGGGA
65 -ACCAGACCGGACCGAGGGTTACGGCAGCAGGACCAGTAGAGGGATCGACAGCACGCAAGGGGGA
*
12534985 TCGAGTTGATCCCC
129 TCGAGCTGATCCCC
12534999 GACTTGCGCA
Statistics
Matches: 118, Mismatches: 21, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
169 4 0.03
170 111 0.94
171 3 0.03
ACGTcount: A:0.21, C:0.25, G:0.32, T:0.23
Consensus pattern (170 bp):
CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCGAAGA
CCAGACCGGACCGAGGGTTACGGCAGCAGGACCAGTAGAGGGATCGACAGCACGCAAGGGGGATC
GAGCTGATCCCCAGCTTACGCATTCTAACTCTCCGGCTGG
Found at i:12535398 original size:159 final size:158
Alignment explanation
Indices: 12535103--12535607 Score: 484
Period size: 159 Copynumber: 3.2 Consensus size: 158
12535093 CCCAGTCTAA
* * * * * * * * *
12535103 GCATATGGAGTTCATTTCCA-ATCTAAG-ATCAGATCGGACCGAGGGTTATGACAGCAAGATCGA
1 GCATACGGAGTTCA-TTCCATGTCTAAGCACCAGATCAGATCGAGGGTTGTGGCAGCAGGACCGA
* * * *
12535166 CAGCACGCAGTGGGGACCGAGCTAATCCCCGGCTTGCACATTCTGCCTCTTCGGCCGGCTAAACA
65 CAGCACGCAGGGGGGACCGAGCTGAT-CCCTGCTTGCACATTCTGCCTCTTCGGCCGGCTAAACG
* *
12535231 CCCACACGCCCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
12535261 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGA-CTGAGGGTTGTGGTAGC-GAGACCG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAGATC-GAGGGTTGTGGCAGCAG-GACCG
* * * *
12535323 GCAGCACGCAGAGGGGGACCGAGCTGATCCTCTGCTTGCACATTATGCCTCTTCGGTCGGCTCAA
64 ACAGCACGCAG-GGGGGACCGAGCTGATCC-CTGCTTGCACATTCTGCCTCTTCGGCCGGCTAAA
* * *
12535388 TGCCCGCACGCTCGTTTCATGGGTTGACTTAT
127 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *** * *
12535420 GCATACAGAGTTCATTCCCA-GTCTAAG-ATTGGATCGGATCGAGGGTTGTGGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCAGATCGAGGGTTGTGGCAGCAGGACCGA
* * * * * * * * *
12535483 CAGCATGCAGGGGGAGACCGAACCGATCCCTGACTTGCGCATTCTACCTCTCCGACCAGCTGAAC
65 CAGCACGCAGGGGG-GACCGAGCTGATCCCTG-CTTGCACATTCTGCCTCTTCGGCCGGCTAAAC
* * * *
12535548 GCCCGCACACTCGTTTCGTTGGTTGGCTTGG
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
12535579 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
12535608 TACAGAGTTC
Statistics
Matches: 281, Mismatches: 52, Indels: 26
0.78 0.14 0.07
Matches are distributed among these distances:
157 6 0.02
158 62 0.22
159 207 0.74
160 6 0.02
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAGATCGAGGGTTGTGGCAGCAGGACCGAC
AGCACGCAGGGGGGACCGAGCTGATCCCTGCTTGCACATTCTGCCTCTTCGGCCGGCTAAACGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:12535615 original size:26 final size:26
Alignment explanation
Indices: 12535579--12535631 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12535569 GTTGGCTTGG
*
12535579 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
12535605 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
12535631 G
1 G
12535632 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:12536347 original size:26 final size:26
Alignment explanation
Indices: 12536311--12536363 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12536301 GTTGACTTAG
12536311 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
12536337 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
12536363 G
1 G
12536364 ATTGGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:12536828 original size:159 final size:158
Alignment explanation
Indices: 12536337--12536837 Score: 487
Period size: 158 Copynumber: 3.2 Consensus size: 158
12536327 CCTAGTCTAA
* *
12536337 GCATACGGAGTTCATTCC-TAGTCTAAGATTGGACAGGACCGAGGGTTACGGCAGTAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATTAGACCGGACCGAGGGTTACGGCAGTAGGATCGAC
* * * * * * * *
12536401 AGCACGTAGGGG-GACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGACCGAGCTC
65 AGCAAGCAGGGGAGATCGGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCAC
*
12536465 CCGCACGCCCATTTCGTGGGTTGGCTTAG
130 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* *** * ** *
12536494 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGT-GAGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATTAGACCGGACCGAGGGTTACGGCAGTAG-GATCGA
* * * * * * ** *
12536557 TAGCAAGCAGAGGG-GAATTGGGTCGATTCTCGGCTTGTGCGTTATGCCTCTTTGGT-GGCTCAG
64 CAGCAAGCAG-GGGAG-ATCGGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAG
** * * *
12536620 TGCTCGCACGCTCATTTTGTGGGTTGACTTAG
127 CACCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * *
12536652 GCATACGAAGTTTATTCCCA-GTCTAAGATTAGACCGGACC-AGGGGTTACGACAATAGGATTGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATTAGACCGGACCGA-GGGTTACGGCAGTAGGATCGA
* * * *
12536715 CAGCATGCAGGGGCAGATCGGGCCTATCCTCGGCTTGTGCATTCTGGCTCTCCAGTCGGCTGAGC
64 CAGCAAGCAGGGG-AGATCGGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGC
*
12536780 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 ACCCGCACGCTCATTTCGTGGGTTGGCTTAG
12536811 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
12536838 CCCCAATCGA
Statistics
Matches: 265, Mismatches: 66, Indels: 24
0.75 0.19 0.07
Matches are distributed among these distances:
156 1 0.00
157 60 0.23
158 116 0.44
159 88 0.33
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATTAGACCGGACCGAGGGTTACGGCAGTAGGATCGACA
GCAAGCAGGGGAGATCGGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCACC
CGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:12537024 original size:26 final size:26
Alignment explanation
Indices: 12536995--12537047 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12536985 GTTGACTTAG
*
12536995 GCATACGGAGGTCATCCCCAGTCTAA
1 GCATACGAAGGTCATCCCCAGTCTAA
* * *
12537021 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGGTCATCCCCAGTCTAA
12537047 G
1 G
12537048 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGGTCATCCCCAGTCTAA
Found at i:12538611 original size:26 final size:26
Alignment explanation
Indices: 12538561--12538612 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12538551 TTAGCTTACA
*
12538561 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATGACTAAG
12538587 CATACGGAGTTCATTCCCA-GACTAAG
1 CATACGGAGTTCATT-CCATGACTAAG
12538613 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATGACTAAG
Found at i:12538748 original size:181 final size:182
Alignment explanation
Indices: 12538478--12538977 Score: 480
Period size: 183 Copynumber: 2.7 Consensus size: 182
12538468 GACACAGGAG
* * * * * * * ** * * *
12538478 GGATCGGGTTGATCCCCAGCTTTCGCATTTTGCCTCTTCAGTCGGCTGAGCACTCGCACACTCGT
1 GGATCAGGCTGATCCCCGGCTTGCGAATTTTGCCTC-TCAGCCGGTTGAGTGCCCGCACGCTTGT
** * *
12538543 TTCATGGGTT-AGCTTACACATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
65 TTCATGGGTTGA-CTTAGGCATACGGAGTTCATTCCATATCTAAGCATATGGAGTTCATTCCCAG
* * * * * * *
12538607 ACTAAGATCAGA-TCGGATCAAGGCTAGC-AGTAGCAGGA-C-TAGCATGCAGGGG
129 TCTAAGATCAAACT-GGACCAAGGCTAGCGA-TAGCAGGATCACAGCACGCAGAGA
*
12538659 GGA-CTAGGCTGATCCCCGGCTTGCGAATTTTACCTCTCCAGCCGGTTGAGTGCCCGCACGCTTG
1 GGATC-AGGCTGATCCCCGGCTTGCGAATTTTGCCTCT-CAGCCGGTTGAGTGCCCGCACGCTTG
*
12538723 TTTCATGGGTTGACTTAGGCATACGGAGTTCATACC-TAATCTAAGCATATGG-GTTCATTCCCA
64 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT-ATCTAAGCATATGGAGTTCATTCCCA
* * *
12538786 GTCTAAGATCAAACTGGACCGAGGGTTGCGATAGCAGGATCGACAGCACGCAGAGA
128 GTCTAAGATCAAACTGGACCAAGGCTAGCGATAGCAGGATC-ACAGCACGCAGAGA
* * * * * *
12538842 GGATCGGGCCGATCCTCGGCTTGC-ACATTCTGCCTCTCTGACCGGTTGAGTGCCCGCATGCTTG
1 GGATCAGGCTGATCCCCGGCTTGCGA-ATTTTGCCTCTCAG-CCGGTTGAGTGCCCGCACGCTTG
* * * * *
12538906 TTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATCTCTAAAG-ATATAGAGTTCATTCCCA
64 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATATCT-AAGCATATGGAGTTCATTCCCA
12538970 GTCTAAGA
128 GTCTAAGA
12538978 GTTTGAGCCA
Statistics
Matches: 263, Mismatches: 41, Indels: 27
0.79 0.12 0.08
Matches are distributed among these distances:
180 43 0.16
181 93 0.35
182 4 0.02
183 99 0.38
184 24 0.09
ACGTcount: A:0.22, C:0.25, G:0.26, T:0.27
Consensus pattern (182 bp):
GGATCAGGCTGATCCCCGGCTTGCGAATTTTGCCTCTCAGCCGGTTGAGTGCCCGCACGCTTGTT
TCATGGGTTGACTTAGGCATACGGAGTTCATTCCATATCTAAGCATATGGAGTTCATTCCCAGTC
TAAGATCAAACTGGACCAAGGCTAGCGATAGCAGGATCACAGCACGCAGAGA
Found at i:12540290 original size:158 final size:156
Alignment explanation
Indices: 12539942--12540314 Score: 401
Period size: 158 Copynumber: 2.4 Consensus size: 156
12539932 GCCGAGCCCT
** * **
12539942 GCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAGCCCCAGCCGGA
1 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCA-GTCTAAG-ATCAGCCGGA
* * ** **
12540007 CTGAGGGTTGTGGCAGCGGGACCGGTAGCACGCAGAAGGGGACCGGATCGATCCCCAGCTTGCGC
64 CCGAGGGTTGCGGCAGCAAGACCGACAGCACGCAGAAGGGGACCGGATCGATCCCCAGCTTGCGC
* * * *
12540072 ATTATGCCTATCCGGCCGGCTCAGCGCCG
129 ATTAT-CCTATCCGGCCGACTAAGCACCC
* * * *
12540101 GCACGCTCATTTCGTGGGTTGACTTATGCATACAAAGTTCATTCCTAGTCTAAGATCAGACTGGA
1 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCC-AGTCTAAGATCAG-CCGGA
* *
12540166 CCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAG-GGGGGACCTGG-TCGATCCCCAGCTTGCG
64 CCGAGGGTTGCGGCAGCAAGACCGACAGCACGCAGAAGGGGACC-GGATCGATCCCCAGCTTGCG
* * *
12540229 TATTCCAT-CTCTCCGGTCGACTAAGCACCC
128 CATT--ATCCTATCCGGCCGACTAAGCACCC
* * *
12540259 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATATAGAGTTCATTCCCAATCTAAGAT
1 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCAGTCTAAGAT
12540315 TTTGAGTGAC
Statistics
Matches: 178, Mismatches: 30, Indels: 13
0.81 0.14 0.06
Matches are distributed among these distances:
158 93 0.52
159 82 0.46
160 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (156 bp):
GCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCAGTCTAAGATCAGCCGGACC
GAGGGTTGCGGCAGCAAGACCGACAGCACGCAGAAGGGGACCGGATCGATCCCCAGCTTGCGCAT
TATCCTATCCGGCCGACTAAGCACCC
Found at i:12541013 original size:26 final size:26
Alignment explanation
Indices: 12540983--12541035 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12540973 GTTGACTTAG
12540983 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12541009 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12541035 G
1 G
12541036 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12541483 original size:158 final size:156
Alignment explanation
Indices: 12541009--12541509 Score: 497
Period size: 158 Copynumber: 3.2 Consensus size: 156
12540999 CCCAGTCTAA
* * * * * *
12541009 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGAACCGAGGGTTACGAAAGTAGGATCGAA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCAAGGGTTGCG-CAGCAGGATCGAC
** * * * * * * * * *
12541073 AGCATGCAGGGGGGACCGGGCTGATCCCTGACTTGCGCATTCTGCCTTTTCGATCGGTTGAGCGC
64 AGCACACA-GGGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCGC
* * *
12541138 CCGCACACCCATTTCGTGGGTTGTA-TTAG
128 CTGCACGCTCATTTCGTGGGTTG-ACTTAG
* ** * * *
12541167 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCAAGGGTTGTGGCAGCGGGATCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCAAGGGTTG-CGCAGCAGGATCGAC
* * * * * * *
12541231 AGCACGCAGAGGGAGATCGGGTCGATCCCCGGCTTGCACATTATGCCTCTCCGACTGGCTCAACA
64 AGCACACAG-GGG-GATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCG
*
12541296 CCTGAACGCTCATTTCGTGGGTTGACTTAG
127 CCTGCACGCTCATTTCGTGGGTTGACTTAG
* * *
12541326 GCATACGGAGTTAATTCTCA-GTCTAAGATCAGACCGGACTAAGGATTGCAGCAGCAGGATCGAC
1 GCATACGGAGTTCATTC-CATGTCTAAGATCAGACCGGACCAAGGGTTGC-GCAGCAGGATCGAC
* *
12541390 AGCACATAGGAGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGACTGAGCGC
64 AGCACACAGG-GGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCGC
* *
12541455 TTGCACGCTCATTTCGTGGGTTGGCTTAG
128 CTGCACGCTCATTTCGTGGGTTGACTTAG
*
12541484 GCATACGGAATTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
12541510 ACCCTAGCCA
Statistics
Matches: 277, Mismatches: 55, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
157 6 0.02
158 149 0.54
159 120 0.43
160 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCAAGGGTTGCGCAGCAGGATCGACAG
CACACAGGGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCCTG
CACGCTCATTTCGTGGGTTGACTTAG
Found at i:12541697 original size:26 final size:26
Alignment explanation
Indices: 12541668--12541746 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
12541658 GTTGACTTAG
*
12541668 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12541694 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12541720 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12541746 G
1 G
12541747 ATCAGATCGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12542221 original size:158 final size:156
Alignment explanation
Indices: 12541720--12542212 Score: 499
Period size: 158 Copynumber: 3.1 Consensus size: 156
12541710 CCCAGTCTAA
* *
12541720 GCATACGGAGTTCATTCCTAGTCTAAGATCAGA-TCGGACCGAGGGTTACGATAGTAGGATCGAC
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACT-GGACCGAGGGTTGCGATAGTAGGATCGGC
* * * * *
12541784 AGCACGTAGGGGGGACCGGGCCAATCCCCGACTTGTGCATTCTGTCTCTTCGGTCGACTGAGCAC
65 AGCACGCAGGGGGGACC-GGCCGATCCTCGATTTGTGCATTCTGCCTCTTCGGTCG-CTGAGCAC
* * ** *
12541849 CCGTACACCCGTTTCATCGGTTGGCTTAG
128 CCGCACGCTTGTTTCATGGGTTGGCTTAG
* ** * * * * * ** * *
12541878 GCAT-TGGTAGTTCATTCC-ATGTCTAAGCCCCAGTC-AGACCAAGGGTTGTGGTAGCGGGACCA
1 GCATACGG-AGTTCATTCCTA-GTCTAAG-ATCAGACTGGACCGAGGGTTGCGATAGTAGGATCG
** * * *
12541940 GCAGCACGCAGAGGGGGATTGGTCCGATCCTCGATTTGTGCATTATGCCTCTTCGATCGGCTTAG
63 GCAGCACGCAG-GGGGGACCGG-CCGATCCTCGATTTGTGCATTCTGCCTCTTCGGTC-GCTGAG
* * * * ** *
12542005 CATCGGCACGCTTGTTCCGTGGGTTAACTTAT
125 CACCCGCACGCTTGTTTCATGGGTTGGCTTAG
*
12542037 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCGATAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCGATAGTAGGATCGGCA
* * *
12542102 GCACGCAGGGGGGACCGAGCTGATCCTCGATTTGTGCATTCTGCCTCTTCGGCCAGCTGAGCGCC
66 GCACGCAGGGGGGACCG-GCCGATCCTCGATTTGTGCATTCTGCCTCTTCGGTC-GCTGAGCACC
12542167 CGCACGCTTGTTTCATGGGTTGGCTTAG
129 CGCACGCTTGTTTCATGGGTTGGCTTAG
12542195 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
12542213 ATTACTAAGC
Statistics
Matches: 259, Mismatches: 65, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
157 3 0.01
158 139 0.54
159 113 0.44
160 4 0.02
ACGTcount: A:0.19, C:0.25, G:0.29, T:0.26
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCGATAGTAGGATCGGCA
GCACGCAGGGGGGACCGGCCGATCCTCGATTTGTGCATTCTGCCTCTTCGGTCGCTGAGCACCCG
CACGCTTGTTTCATGGGTTGGCTTAG
Found at i:12542420 original size:26 final size:26
Alignment explanation
Indices: 12542382--12542434 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12542372 GTTGACTTAG
12542382 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
12542408 GCATATGGGGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
12542434 G
1 G
12542435 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:12542918 original size:26 final size:26
Alignment explanation
Indices: 12542882--12542934 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12542872 GTTGGCTTAG
*
12542882 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCAT-TCTAA
12542908 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCATTCTAA
12542934 G
1 G
12542935 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCATTCTAA
Found at i:12543300 original size:26 final size:26
Alignment explanation
Indices: 12543247--12543301 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
12543237 TGGGTTGACT
*
12543247 TAAGCATACGAGGTTCATCCCCAGTC
1 TAAGCATACGAGGTTCATCCCCAATC
* *
12543273 TAAGCATACG-GAGTTCATTCTCAATC
1 TAAGCATACGAG-GTTCATCCCCAATC
12543299 TAA
1 TAA
12543302 AATCGGACTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAGGTTCATCCCCAATC
Found at i:12543623 original size:26 final size:26
Alignment explanation
Indices: 12543594--12543646 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12543584 GTTGGCTTAG
* *
12543594 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
12543620 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
12543646 G
1 G
12543647 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:12544025 original size:26 final size:26
Alignment explanation
Indices: 12543979--12544028 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
12543969 GTTGACTTAG
*
12543979 GCATACGGAGTTTATCTCCAGTCTAA
1 GCATACGGAGTTCATCTCCAGTCTAA
*
12544005 GCATGCGGAGTTCAT-TCCCAGTCT
1 GCATACGGAGTTCATCT-CCAGTCT
12544029 TAGATCAGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 20 0.95
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAGTCTAA
Found at i:12544350 original size:26 final size:26
Alignment explanation
Indices: 12544321--12544373 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12544311 GTTGGCTGAG
*
12544321 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
12544347 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
12544373 G
1 G
12544374 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:12544644 original size:13 final size:13
Alignment explanation
Indices: 12544626--12544652 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
12544616 TGCACATTAT
12544626 GCCTGTCCGATCG
1 GCCTGTCCGATCG
12544639 GCCTGTCCGATCG
1 GCCTGTCCGATCG
12544652 G
1 G
12544653 TTGAGCGCCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.37, G:0.33, T:0.22
Consensus pattern (13 bp):
GCCTGTCCGATCG
Found at i:12544740 original size:368 final size:355
Alignment explanation
Indices: 12544275--12544983 Score: 803
Period size: 354 Copynumber: 2.0 Consensus size: 355
12544265 ATTCTACCTT
* * * *
12544275 TCCGATCAGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTGAGGCATACGGAGTTCATTCCA
1 TCCGATCAGTTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTGAGGCAAACGGAGTTCATCCCA
* * * ** *
12544340 TGTCTAAGCATATAGAGTTCATTCCTAGTCTAAGATCGGATTGGGGCCGAGGGTTGTGATAGCAG
66 TGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGA-CCGGACCGA-GG--GT--T-GC--
* * * * * *
12544405 GACCAGTAGCAGGATCGATAGCATGTAGGAGGGATCGAACCGATCCTCGACTTGCGCATTCTGCG
122 G----GTAGCAGGATCGACAGCACGCAGGAGGGACCGAACCGATCCTCGACTTGCACATTCTGCC
* * * * *
12544470 TCTCTGACCTA-CTGAGTGCCCGCACGCTTGTTTCATCGGTTGGCTTAGGCATACTGAGTTCATT
183 TCT-TCACCTAGCTGAGAGCCCGCACAC-CGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * *
12544534 CCATGTCTAAGCCCCAGCCAAACCGAGTGTTGTGGCAGCAGGATCGGCAACATGCAAAAGGGGAC
246 CCATGTCTAAGCCCCAGCCAAACCGAGGGTTATGGCAGCAGGACCGACAACACGCAAAAGGGGAC
* * *
12544599 CGGGCTAATCCCCTGCTTGCACATTATGCCTGTCCGATCGGCCTG
311 CAGGCAAATCCCCGGCTTGCACATTATGCCTGTCCGATCGGCCTG
* ** * *
12544644 TCCGATCGGTTGAGCG-CCGTGTGCTCATTTCGTGGGTTGACTTAGGCAAATGGAGTTCATCCC-
1 TCCGATCAGTTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTGAGGCAAACGGAGTTCATCCCA
*
12544707 TAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTCGCAG
66 T-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAG
* * *
12544772 GATCGACAGCACGCAGGTGGGACCGAGCCGATCCTCGACTTGCACATTCTGCCTCTTCAGCTAGC
130 GATCGACAGCACGCAGGAGGGACCGAACCGATCCTCGACTTGCACATTCTGCCTCTTCACCTAGC
* * * * *
12544837 TGAGAGCCTGTATACCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
195 TGAGAGCCCGCACACCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
* * * * * *
12544902 CAGTCAGACCGAGGGTTATGGCAGCGGGACCGACAACACGGAAAGGGGGATCAGGCAAATCCCCG
260 CAGCCAAACCGAGGGTTATGGCAGCAGGACCGACAACACGCAAAAGGGGACCAGGCAAATCCCCG
*
12544967 GCTTGCGCATTATGCCT
325 GCTTGCACATTATGCCT
12544984 CTTCGATCAG
Statistics
Matches: 288, Mismatches: 50, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
354 118 0.41
355 65 0.23
359 1 0.00
361 2 0.01
362 1 0.00
364 2 0.01
366 2 0.01
367 7 0.02
368 75 0.26
369 15 0.05
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (355 bp):
TCCGATCAGTTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTGAGGCAAACGGAGTTCATCCCA
TGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGG
ATCGACAGCACGCAGGAGGGACCGAACCGATCCTCGACTTGCACATTCTGCCTCTTCACCTAGCT
GAGAGCCCGCACACCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
AGCCAAACCGAGGGTTATGGCAGCAGGACCGACAACACGCAAAAGGGGACCAGGCAAATCCCCGG
CTTGCACATTATGCCTGTCCGATCGGCCTG
Found at i:12550456 original size:26 final size:26
Alignment explanation
Indices: 12550426--12550476 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12550416 GTTGACTTAG
12550426 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12550452 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
12550477 TGATTAGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12550660 original size:26 final size:26
Alignment explanation
Indices: 12550610--12550662 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12550600 GTTGGCTTAG
* *
12550610 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACCGAGTTCATTCCATATCTAA
12550636 GCATACCGAGTTCATTCCCA-ATCTAA
1 GCATACCGAGTTCATT-CCATATCTAA
12550662 G
1 G
12550663 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCATATCTAA
Found at i:12551882 original size:26 final size:26
Alignment explanation
Indices: 12551846--12551898 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12551836 GTTGGCTTAG
12551846 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
12551872 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
12551898 G
1 G
12551899 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:12552257 original size:26 final size:26
Alignment explanation
Indices: 12552227--12552279 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12552217 GTTGACTTAG
*
12552227 GCATACGGAGTTCATCTCC-AGTCTAA
1 GCATACGAAGTTCAT-TCCTAGTCTAA
12552253 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
12552279 G
1 G
12552280 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:12552549 original size:159 final size:159
Alignment explanation
Indices: 12552253--12553079 Score: 699
Period size: 159 Copynumber: 5.2 Consensus size: 159
12552243 TCCAGTCTAA
* * * * * *
12552253 GCATACGAAGTTCATTCC-TAGTCTAAG-ATCGGACT-GGACCGAGGGTTGCGACAGCAAGATCG
1 GCATACGGAGTTCATTCCAT-GTCTAAGCATCAG-CTCGGACAGAGGGTTGTGGCAGCAGGATCG
* * * * * * * * * * * **
12552315 GTAGCACGTAAGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTACCTCTCCGACCTGTTGAAT
64 ATAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGC
* *
12552380 GCCCGCACGCTCGTTTCGTGGGTGGGCTTAG
129 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * ** * * *
12552411 GCATAGGGAGTTTATTCCATGTCTAAGCCCCAGCT-AGACAGAGGGTTGTGGCAGCGGGATCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCATCAGCTCGGACAGAGGGTTGTGGCAGCAGGATCGAT
* * *
12552475 AGCACGCAGAGGGGGGCCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCG
66 AGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCG
* * *
12552540 CCCGAACGCTCATTTTGTGGGTTGACTTAG
130 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * *
12552570 GCATACAGAGCTCATTCCCA-GTCTAAGATCGGATCAGACT-GGATC-GATGGTTATGGCAGTAG
1 GCATACGGAGTTCATT-CCATGTCTAAG--C--ATCAG-CTCGGA-CAGAGGGTTGTGGCAGCAG
* * * * * * * * * * *
12552632 GATCGATAGCACGCAGGGAGGATCGGGCTGATCCCTGGCTTACGTATTCTGGCTCTCCCACCGAC
59 GATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGC
* *
12552697 TGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
124 TCAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * * *
12552733 GCATACAGTGTTCATTCCATGTCTAAGCCA-CAG-TCGGACCGAGGGGTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCATGTCTAAG-CATCAGCTCGGACAGAGGGTTGTGGCAGCAGGATCGA
* * ** * * *
12552796 TAGCACGTAGAGGGGGACTGGATCGATCCCCGGCTTGCACATTATGCCTCTCCGATCAGCTCAGT
65 TAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGC
* * *
12552861 GCCCGCACGCTCGTTTTGTGGGTTGACTTAG
129 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * *
12552892 GCATACGGAGTTCATTTCCA-GTCTAAG-ATCGGATCGGA-ACGAGGGTTGTAGCAGCAGGATCG
1 GCATACGGAGTTCA-TTCCATGTCTAAGCATCAGCTCGGACA-GAGGGTTGTGGCAGCAGGATCG
* * * * * * * *
12552954 ATAGCACGCAGGGTGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTTTCCCG-TCTGTTGAG
64 ATAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCT-CCGATCGGCTCAG
*
12553018 CGCCCGCACGCTCATTTCGGGGGTTGGCTTAG
128 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
12553050 GCATACGGAGTTCATTCCATGTCTAAGCAT
1 GCATACGGAGTTCATTCCATGTCTAAGCAT
12553080 ACGGAGTTCA
Statistics
Matches: 529, Mismatches: 119, Indels: 41
0.77 0.17 0.06
Matches are distributed among these distances:
157 8 0.02
158 169 0.32
159 213 0.40
160 9 0.02
161 1 0.00
162 4 0.01
163 92 0.17
164 32 0.06
165 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCATCAGCTCGGACAGAGGGTTGTGGCAGCAGGATCGAT
AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCGC
CCGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:12552880 original size:322 final size:317
Alignment explanation
Indices: 12552264--12553077 Score: 940
Period size: 322 Copynumber: 2.6 Consensus size: 317
12552254 CATACGAAGT
* * ** * * *
12552264 TCATTCCTAGTCTAAGATCGGA-CTGGACCGAGGGTT-GCGACAGCAAGATCGGTAGCACGTAAG
1 TCATTCCCAGTCTAAGATCGGATC-GGAACGAGGGTTATAG-CAGCAGGATCGATAGCACG-CAG
* * * * * *
12552327 GG-GGACCGAGCCGATCCCCGACTTGCGCATTCTACCTCT-CCGACCTGTTGAATGCCCGCACGC
63 GGAGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCCGACC-GCTGAGTGCCCGCACGC
* * * * *
12552390 TCGTTTCGTGGGTGGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAGCTAGACAGAGG
127 TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCACAGCTAGACAGAGG
* * * * * *
12552455 GTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGGCCGGGCCGATCCCTGGCTTGCGCATTATG
192 GGTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGACCGATCCCCGGCTTGCACATTATG
* *
12552520 CCTCTTCGATCGGCTCAGCGCCCGAACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGC
257 CCTCTCCGATCAGCTCAGCGCCCGAACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGC
* * * *
12552581 TCATTCCCAGTCTAAGATCGGATCAGACTGGATCGATGGTTATGGCAGTAGGATCGATAGCACGC
1 TCATTCCCAGTCTAAGATCGGAT----C-GGAACGAGGGTTATAGCAGCAGGATCGATAGCACGC
* * * * *
12552646 AGGGAGGATCGGG-CTGATCCCTGGCTTACGTATTCTGGCTCTCCC-ACCGACTGAGTGCCCGCA
61 AGGGAGGACCGGGTC-GATCCCCGACTTACGCATTCTGCCTCTCCCGACCG-CTGAGTGCCCGCA
* * * *
12552709 CGCTCATTTCGTGGGTTGGCTTAGGCATACAGTGTTCATTCCATGTCTAAGCCACAG-TCGGACC
124 CGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCACAGCT-AGACA
** * * *
12552773 GAGGGGTGTGGCAGCGGGACCGGTAGCACGTAGAGGGGGACTGGATCGATCCCCGGCTTGCACAT
188 GAGGGGTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGACCGATCCCCGGCTTGCACAT
* * * * *
12552838 TATGCCTCTCCGATCAGCTCAGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGT
253 TATGCCTCTCCGATCAGCTCAGCGCCCGAACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGC
* * *
12552903 TCATTTCCAGTCTAAGATCGGATCGGAACGAGGGTTGTAGCAGCAGGATCGATAGCACGCAGGGT
1 TCATTCCCAGTCTAAGATCGGATCGGAACGAGGGTTATAGCAGCAGGATCGATAGCACGCAGGGA
* * * * * *
12552968 GGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTTTCCCGTCTGTTGAGCGCCCGCACGCTCAT
66 GGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCCGACCGCTGAGTGCCCGCACGCTCAT
*
12553033 TTCGGGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
131 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12553078 ATACGGAGTT
Statistics
Matches: 417, Mismatches: 67, Indels: 26
0.82 0.13 0.05
Matches are distributed among these distances:
317 147 0.35
318 4 0.01
321 7 0.02
322 256 0.61
323 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (317 bp):
TCATTCCCAGTCTAAGATCGGATCGGAACGAGGGTTATAGCAGCAGGATCGATAGCACGCAGGGA
GGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCCGACCGCTGAGTGCCCGCACGCTCAT
TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCACAGCTAGACAGAGGGGTG
TGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGACCGATCCCCGGCTTGCACATTATGCCTC
TCCGATCAGCTCAGCGCCCGAACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGC
Found at i:12553086 original size:26 final size:26
Alignment explanation
Indices: 12553050--12553102 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12553040 GTTGGCTTAG
12553050 GCATACGGAGTTCATTCCAT-GTCTAA
1 GCATACGGAGTTCATT-CATAGTCTAA
12553076 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATTCATAGTCTAA
12553102 G
1 G
12553103 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCATAGTCTAA
Found at i:12553204 original size:184 final size:184
Alignment explanation
Indices: 12552892--12554799 Score: 1518
Period size: 184 Copynumber: 10.0 Consensus size: 184
12552882 GTTGACTTAG
* * * * ** *
12552892 GCATACGGAGTTCATTTCCAGTCTAAGATCGGATCGGAACGAGGGTTGTAGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
12552957 GCACGCAGGGTGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTTTCCCG-TCTGTTGAGCGC
66 GCACGCAGGGTGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCT-CCGATCGGCTGAGCGC
* *
12553021 CCGCACGCTCATTTCGGGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
** * * * * *
12553076 GCATACGGAGTTCATTCATAGTCTAAGATCAGACCAGATCGAAGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * *
12553141 GCATGCAGGGTGGACCGTGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCC
66 GCACGCAGGGTGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
* *
12553206 CGCATGCTCGTTTCGTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * * *
12553260 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAAGGTTGCGGTAGCAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC-G-A
* * * * * * * *
12553325 GCAGGATCGGCAGCATGTAAAAAGGGATCGGGCCGATCCCTGGTTTGCGTATTTTGCCTCTCCGG
64 -CAGCA-C-GCAG--GGT------GGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA
* * *
12553390 TCGGCCTTTTCGGCCAGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGT
118 TCGG-C---T--G--AGC---GC-CC-GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
*
12553455 TCATCCCCA-GTCTAA
170 TCAT-TCCATGTCTAA
* * * * * *
12553470 GCATGCGGAGTTCATTCCTAGTCTAAGATCAGACTGGATCGAGGGTTGTGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * *
12553535 GCACGTAGGGGGGATCGGGTC-AGTCCCCGACTTGCGCATTCTACCTCTCCGATCGACTGAGCCC
66 GCACGCAGGGTGGACCGGGCCGA-TCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
* * * *
12553599 CCGCACGCTCCTTTCGCGGGTTGGCTTAGGCATATGGATTTCATTCCATGTCTAA
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * ** * *
12553654 GCCTACGGAGTTCATTCCTAGTCTAAGATCATATTGGACCGAAGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * ** * * * *
12553719 GCACGCAGGGTTGACTGGGTCGATCCTAGGCTTGCGCATTCTAGCTTTTCCG-TCGGTTGAGTGC
66 GCACGCAGGGTGGACCGGGCCGATCCCCGGCTTGCGCATTCT-GCCTCTCCGATCGGCTGAGCGC
* * * * * *
12553783 CCACATGCTTGTTTCGGGGGTTGGCGTAGGCATACGGAGTTCATTCAATGTCTAA
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * *
12553838 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
12553903 GCACGTAGGGTGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCC
66 GCACGCAGGGTGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
* * * * * *
12553968 CGCATGCTAGTTTCGTGGGTTTGCTTAGGCACACAGAGTTCATTCCAGGTCTAA
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
12554022 GCATACAGAGTTCATTCCTAGTCTAAGATC-GCACCAGACCGAGGGTTACGGCAGTAGGACCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTT---GC----GG--CAGC
* * * * * * *
12554086 AGCAAGATCGATAGCACACAAGGGGGGACCAGGCCGATCCCTGGCTTACGTATTCTGCCTCTCCG
56 AG---GATCGACAGCACGC-AGGGTGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
* * *
12554151 ATCGGCCTCTCCGACTGTTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
117 ATC-G-------G-C---TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
*
12554216 TCATCCCCA-GTCTAA
170 TCAT-TCCATGTCTAA
* * * *
12554231 CCATATGGAGTTCATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTTGCGACAGCATGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * ** * * * * ** * *
12554295 AGAACGCAGAGG-GGATCAGATCGGTCCCCGACTTACGCATTCTGCCTCTCCGACCAACTGAACT
65 AGCACGCAG-GGTGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
* * *
12554359 TCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* *
12554415 GCCTATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGACCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA-GG--GT--T-GC--G---G-CA
* * * * * * ** *
12554480 GCAAGATTGACAGCACGTAGGGGGGACTGGGTCGATCCCCGGCTTTTGCATTCTACCTCTCCGAT
54 GCAGGATCGACAGCACGCAGGGTGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAT
* * * * * * *
12554545 CCCCGGCTGAGCACCCGCACACTTGTTTCGTGGGTTGACCTAGGCATACGGAGTTCATCCCCA-A
119 ---CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATG
12554609 TCTAA
180 TCTAA
* *
12554614 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGACTGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * * * *
12554678 AGCCCACAAGGG-GGATCGGGCCAATCCTCAGG-TTACGCATTCTGCCTCTCCGACCGACTTAGT
65 AGCACGC-AGGGTGGACCGGGCCGATCC-CCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
* * * *
12554741 ACCCGCACGCCCGTTTCGTGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
12554798 GC
1 GC
12554800 CCCAGTTGGA
Statistics
Matches: 1386, Mismatches: 254, Indels: 168
0.77 0.14 0.09
Matches are distributed among these distances:
183 20 0.01
184 723 0.52
185 13 0.01
186 2 0.00
187 53 0.04
188 7 0.01
189 8 0.01
190 2 0.00
191 6 0.00
192 1 0.00
193 8 0.01
194 1 0.00
195 2 0.00
196 102 0.07
197 125 0.09
198 5 0.00
199 86 0.06
200 8 0.01
201 1 0.00
202 1 0.00
203 2 0.00
205 6 0.00
206 4 0.00
207 4 0.00
208 3 0.00
209 93 0.07
210 97 0.07
211 3 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGTGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:12553263 original size:26 final size:26
Alignment explanation
Indices: 12553234--12553286 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12553224 GTTTGCTTAG
12553234 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
12553260 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
12553286 G
1 G
12553287 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:12554048 original size:578 final size:572
Alignment explanation
Indices: 12552892--12553965 Score: 1289
Period size: 578 Copynumber: 1.9 Consensus size: 572
12552882 GTTGACTTAG
* *
12552892 GCATACGGAGTTCATTTCCAGTCTAAGATCGGATCGGAACGAGGGTTGTAGCAGCAGGATCGATA
1 GCATACGGAGTTCATTTCCAGTCTAAGATCAGATCGGAACGAGGGTTGTAGCAGCAGGATCGACA
* * * * *
12552957 GCACGCAGGGTGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTTTCCCGTCTGTTGAGCGCC
66 GCACGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCCGTCTGCTGAGCCCC
*
12553022 CGCACGCTCATTTCGGGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGT
131 CGCACGCTCATTTCGCGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGT
* ** * *
12553087 TCATTCATAGTCTAAGATCAGACCAGATCGAAGGTTGTGGTAGCAGGATCGACAGCATGCAGGGT
196 TCATTCATAGTCTAAGATCAGACCAGACCGAAGGTTGCAGCAGCAGGATCGACAGCACGCAGGGT
* * *
12553152 GGACCGTGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCATGCTCGT
261 GGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCACATGCTCGT
* * * * *
12553217 TTCGTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGT
326 TTCGGGGGTTGGCGTAGGCATACGGAGTTCATTCAATGTCTAAGCATACGGAGTTCATTCCCAGT
* *
12553282 CTAAGATCGGACCAGACCGAAGGTTGCGGTAGCAGGACCAGCAGCAGGATCGGCAGCATGTAAAA
391 CTAAGATCGGACCAGACCGAAGGTTGCGGTAGCAGGACCAGCAGCAGCATCGGCAG-AGGT----
** * * * * ***
12553347 AGGGATCGGGCCGATCCCTGGTTTGCGTATTTTGCCTCTCCGGTCGGCCTTTTCGGCCAGCTGAG
451 A-GGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGACTGAGCGGCCAGCTGAG
* * * **** * **
12553412 CGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAA
515 CGCCTGCACACTAGGTTCATGCCAGGACTTAAGCATACAGAGTTCATCCCCAGTCTAA
* *
12553470 GCATGCGGAGTTCA-TTCCTAGTCTAAGATCAGA-CTGGATCGAGGGTTGT-GACAGCAGGATCG
1 GCATACGGAGTTCATTTCC-AGTCTAAGATCAGATC-GGAACGAGGGTTGTAG-CAGCAGGATCG
* *
12553532 ACAGCACGTAGGGGGGATCGGGTC-AGTCCCCGACTTGCGCATTCTACCTCT-CCGATC-GACTG
63 ACAGCACGCAGGGGGGACCGGGTCGA-TCCCCGACTTGCGCATTCTACCTCTCCCG-TCTG-CTG
* * * *
12553594 AGCCCCCGCACGCTCCTTTCGCGGGTTGGCTTAGGCATATGGATTTCATTCCATGTCTAAGCCTA
125 AGCCCCCGCACGCTCATTTCGCGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
* * ***
12553659 CGGAGTTCATTCCTAGTCTAAGATCATATTGGACCGAAGGTTGCAGCAGCAGGATCGACAGCACG
190 CGGAGTTCATTCATAGTCTAAGATCAGACCAGACCGAAGGTTGCAGCAGCAGGATCGACAGCACG
* * * * * * *
12553724 CAGGGTTGACTGGGTCGAT-CCTAGGCTTGCGCATTCTAGCTTTTCCG-TCGGTTGAGTGCCCAC
255 CAGGGTGGACCGGGCCGATCCCT-GGCTTGCGCATTCT-GCCTCTCCGATCGGCTGAGCGCCCAC
*
12553787 ATGCTTGTTTCGGGGGTTGGCGTAGGCATACGGAGTTCATTCAATGTCTAAGCATACGGAGTTCA
318 ATGCTCGTTTCGGGGGTTGGCGTAGGCATACGGAGTTCATTCAATGTCTAAGCATACGGAGTTCA
* * * * * *
12553852 TTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGATC-G-A-CAGCA-C-GTAG-
383 TTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGGTAGCAGGACCAGCAGCAGCATCGGCAGA
12553911 GGT-GGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTC-GACTGAGCG
448 GGTAGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGACTGAGCG
12553966 CCCGCATGCT
Statistics
Matches: 429, Mismatches: 59, Indels: 30
0.83 0.11 0.06
Matches are distributed among these distances:
564 5 0.01
565 38 0.09
571 2 0.00
573 3 0.01
574 1 0.00
575 4 0.01
576 1 0.00
577 15 0.03
578 353 0.82
579 7 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (572 bp):
GCATACGGAGTTCATTTCCAGTCTAAGATCAGATCGGAACGAGGGTTGTAGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCCGTCTGCTGAGCCCC
CGCACGCTCATTTCGCGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGT
TCATTCATAGTCTAAGATCAGACCAGACCGAAGGTTGCAGCAGCAGGATCGACAGCACGCAGGGT
GGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCACATGCTCGT
TTCGGGGGTTGGCGTAGGCATACGGAGTTCATTCAATGTCTAAGCATACGGAGTTCATTCCCAGT
CTAAGATCGGACCAGACCGAAGGTTGCGGTAGCAGGACCAGCAGCAGCATCGGCAGAGGTAGGAT
CGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGACTGAGCGGCCAGCTGAGCGCCTG
CACACTAGGTTCATGCCAGGACTTAAGCATACAGAGTTCATCCCCAGTCTAA
Found at i:12554240 original size:26 final size:26
Alignment explanation
Indices: 12554206--12554256 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12554196 TTGACTTAGG
12554206 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCCAGTCTAAC
* *
12554232 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
12554257 GATCGAACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAC
Found at i:12554624 original size:26 final size:26
Alignment explanation
Indices: 12554588--12554640 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12554578 GTTGACCTAG
12554588 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
12554614 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
12554640 G
1 G
12554641 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:12554936 original size:26 final size:26
Alignment explanation
Indices: 12554907--12554959 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12554897 GTTGGCTTAG
*
12554907 GCATACGGAGTTC-ATTCCATGTCTAA
1 GCATACGGAGTTCAATCCCA-GTCTAA
12554933 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
12554959 G
1 G
12554960 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:12555584 original size:26 final size:26
Alignment explanation
Indices: 12555548--12555598 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12555538 TTGACTTAGG
12555548 CATACGGAGTTCA-TCACCAGTCTAAA
1 CATACGGAGTTCATTC-CCAGTCTAAA
12555574 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
12555599 GATCGGATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:12556075 original size:159 final size:156
Alignment explanation
Indices: 12555576--12556075 Score: 526
Period size: 159 Copynumber: 3.2 Consensus size: 156
12555566 AGTCTAAACA
* * *
12555576 TACGGAGTTCATTCCCA-GTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGTTA-GATCGACAA
1 TACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG-CAGGATCG--AA
* * **
12555639 CACGCATGAGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCC
62 CACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCC
* *
12555704 GCACGC-CTTTTTTGTGGGTTGGCTTAGG-T
127 GCACGCTC-GTTTCGTGGGTTGGCTTAGGCT
* *** * *
12555733 ATAGGGAGTTCATTCCATGTCTAACCCCCA-ACCAGACCGAGGGTTGTGGCAGCAGGACTGGCAA
1 -TACGGAGTTCATTCCATGTCTAA-GATCAGACCAGACCGAGGGTTGCGGCAGCAGGA-TCG-AA
* * * * * *
12555797 CACGCAGAGGGGGATCGGGCCGATCCTCGACTTGTGCATTATACCTCTCCGACCGGCTCAGCACC
62 CACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACC
* * * * *
12555862 TGTACGCTCGTTTCATGGGTTGACTTAGGCA
126 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCT
* * * *
12555893 TACGAAGTTCATTTC-TAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGATAGC
1 TACGGAGTTCATTCCAT-GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGA-A-C
* * * *
12555957 ACGCAGGGTGGGATCGAGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCCC
63 ACGCAGGG-GGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCC
12556022 GCACGCTCGTTTCGTGGGTTGGCTTAGGCT
127 GCACGCTCGTTTCGTGGGTTGGCTTAGGCT
12556052 TACGGAGTTCATTCCATGTCTAAG
1 TACGGAGTTCATTCCATGTCTAAG
12556076 CATACAGAGT
Statistics
Matches: 276, Mismatches: 53, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
157 5 0.02
158 57 0.21
159 212 0.77
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
TACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGAACACG
CAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCAC
GCTCGTTTCGTGGGTTGGCTTAGGCT
Found at i:12556643 original size:26 final size:26
Alignment explanation
Indices: 12556600--12556651 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12556590 GTTGGCTTAG
12556600 GCATACAGAGTTAGTT-CCATGTCTAA
1 GCATACAGAGTTAGTTCCCA-GTCTAA
12556626 GCATACAGAGTTCA-TTCCCAGTCTAA
1 GCATACAGAGTT-AGTTCCCAGTCTAA
12556652 AAGTTTGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTAGTTCCCAGTCTAA
Found at i:12557321 original size:26 final size:26
Alignment explanation
Indices: 12557285--12557334 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
12557275 TGACTTAGGT
* *
12557285 ATACGGAGTTCATCCCCAGTCTAACC
1 ATACAGAGTTCATCCCAAGTCTAACC
*
12557311 ATACAGAGTTCATTCCAAGTCTAA
1 ATACAGAGTTCATCCCAAGTCTAA
12557335 GATCAGACCG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (26 bp):
ATACAGAGTTCATCCCAAGTCTAACC
Found at i:12557960 original size:159 final size:157
Alignment explanation
Indices: 12557628--12558151 Score: 421
Period size: 158 Copynumber: 3.3 Consensus size: 157
12557618 GCGAATGCAT
* * * * * * * * **
12557628 GCTCATTTCGTGGGTTGACTTAAGTATACGGAGTTCATTCCCAGTCTAAGA-TCAGACTGGATTG
1 GCTCGTTTCATGGGTTGGCTTAGGCATA-GGAGTTCATTCCCAGTCTAAGACCCA-ACCGAACAG
* * * * ** * *
12557692 AGGGTTGTGGCAGTAAGATCGGTAGCACGCA-AGGGGGACCGGGCTGATCCTAGGCTTGCGCATT
64 ACGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGAGC-GATCCTCGGCTTGCGCATT
* * *
12557756 CTACCTCTTCGGAT-GGCTCAGCACCCGCAC
128 ATACCTCTCCGG-TCGGCTCAGCGCCCGCAC
* ** * *
12557786 GATCGTTTGGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACCGAACCG
1 GCTCGTTTCATGGGTTGGCTTAGGCATA-GGAGTTCATTCCCA-GTCTAAGACCCAACCGAACAG
* * * *
12557850 AGGGTTGTGGCAGCGGGA-CTGACAGCACGCAGAGGGGGACCAGAGCGATCCTCGACTTGCGCAT
64 ACGGTTGCGGCAGCAGGATC-GACAGCACGCAGAGGGGGACC-GAGCGATCCTCGGCTTGCGCAT
* * * *
12557914 TATGCCTCTCCGGTCTGCTCAGTGCCCGAAC
127 TATACCTCTCCGGTCGGCTCAGCGCCCGCAC
* * * * ** * *
12557945 GCTCGTTTCATGGGTTGACTTCGGCATAGGAGTTCATTCCCAGTTTAAGATCGGATCGGACAGAC
1 GCTCGTTTCATGGGTTGGCTTAGGCATAGGAGTTCATTCCCAGTCTAAGACCCAACCGAACAGAC
* ** * * * *
12558010 GGTTGCGGCAGCAGGATCGACAACACATAG-GGGGGACTGAGTCGGTCCCCGGCTTGCGCATTTT
66 GGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGAG-CGATCCTCGGCTTGCGCATTAT
* * *
12558074 ACCTCTCAGGGCGGCTGAGCGCCCGCAC
130 ACCTCTCCGGTCGGCTCAGCGCCCGCAC
* **
12558102 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGCTCAACCCCAGTCTAAG
1 GCTCGTTTCATGGGTTGGCTTAGGCATA-GGAGTTCATTCCCAGTCTAAG
12558152 CATACAGAGT
Statistics
Matches: 291, Mismatches: 65, Indels: 20
0.77 0.17 0.05
Matches are distributed among these distances:
156 3 0.01
157 76 0.26
158 133 0.46
159 76 0.26
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (157 bp):
GCTCGTTTCATGGGTTGGCTTAGGCATAGGAGTTCATTCCCAGTCTAAGACCCAACCGAACAGAC
GGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGAGCGATCCTCGGCTTGCGCATTATA
CCTCTCCGGTCGGCTCAGCGCCCGCAC
Found at i:12558628 original size:26 final size:26
Alignment explanation
Indices: 12558578--12558630 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12558568 GTTGGCTTAG
*
12558578 GCATAAGGAGTTCATTCCATTTCTAA
1 GCATAAGGAGTTCATTCCATGTCTAA
*
12558604 GCATAGGGAGTTCATTCCCA-GTCTAA
1 GCATAAGGAGTTCATT-CCATGTCTAA
12558630 G
1 G
12558631 ATCACCGGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCATGTCTAA
Found at i:12559509 original size:26 final size:26
Alignment explanation
Indices: 12559459--12559511 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12559449 GTTGGCTTAG
* *
12559459 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
12559485 GCATACAGAGTTCATTCC-TAATCTAA
1 GCATACAGAGTTCATTCCAT-ATCTAA
12559511 G
1 G
12559512 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:12560041 original size:26 final size:25
Alignment explanation
Indices: 12560011--12560062 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
12560001 GTTGGCTTAG
*
12560011 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATCCCA-GTCTAA
12560037 GCATACGGAGTTCATCCCAGTCTAA
1 GCATACGGAGTTCATCCCAGTCTAA
12560062 G
1 G
12560063 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:12560857 original size:159 final size:158
Alignment explanation
Indices: 12560557--12560843 Score: 344
Period size: 159 Copynumber: 1.8 Consensus size: 158
12560547 AAGATTAGAC
* *
12560557 CGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAATGGGGATCGGGCCGATTCCTGACTTG
1 CGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGTAATGGGGATCGGGCCGATCCCTGACTTG
* ** * * * *
12560622 AGCATTCTGCCTCTCCGATTTGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
66 AGCATTATGCCTCTCCGACCTGCTGAACACCCACACGCCCATTTCATGGGTTGACTTAGGCATAG
12560687 GGAATTCATTCCATGTCAAAGCCCTAGT
131 GGAATTCATTCCATGTCAAAGCCCTAGT
* * * *
12560715 CGGATCGAGGGTTGTGGCAGCGGGACCGACAGCACGTAGA-GAGGGA-CAGGGCCGATCCCTGGC
1 CGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGTA-ATG-GGGATC-GGGCCGATCCCTGAC
* * * * * * * *
12560778 TTGCGCATTATGCCTTTCCGGCCTGTTTAACGCCCACACGCTCATTTCGTGGGTTGACTTAGGCA
63 TTGAGCATTATGCCTCTCCGACCTGCTGAACACCCACACGCCCATTTCATGGGTTGACTTAGGCA
12560843 T
128 T
12560844 GCGGGGTTCA
Statistics
Matches: 105, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
158 36 0.34
159 69 0.66
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
CGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGTAATGGGGATCGGGCCGATCCCTGACTTG
AGCATTATGCCTCTCCGACCTGCTGAACACCCACACGCCCATTTCATGGGTTGACTTAGGCATAG
GGAATTCATTCCATGTCAAAGCCCTAGT
Found at i:12561035 original size:26 final size:26
Alignment explanation
Indices: 12560999--12561051 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12560989 GTTGGCTTAG
12560999 GCATACAGAGTTCATTCCAT-GTCTAA
1 GCATACAGAGTTCATT-CATAGTCTAA
*
12561025 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACAGAGTTCATTCATAGTCTAA
12561051 G
1 G
12561052 ATCAAACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCATAGTCTAA
Found at i:12561418 original size:26 final size:26
Alignment explanation
Indices: 12561382--12561432 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12561372 TGACTTAGGT
12561382 ATACCGAGTTCATCCCCAGTCTAAGC
1 ATACCGAGTTCATCCCCAGTCTAAGC
* * *
12561408 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACCGAGTTCATCCCCAGTCTAAG
12561433 ATAGGACCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACCGAGTTCATCCCCAGTCTAAGC
Found at i:12561783 original size:159 final size:159
Alignment explanation
Indices: 12561406--12561897 Score: 485
Period size: 158 Copynumber: 3.1 Consensus size: 159
12561396 CCCAGTCTAA
* * * * *
12561406 GCATACGGAGTTCATTCCTAGTCTAAGATAGGACCATACCGAGGGTTACGGTAGCAGGATCGACA
1 GCATACAGAGTTCATTCCTAGTCTAAGATCGGATCAGATCGAGGGTTACGGTAGCAGGATCGACA
* * * * * **
12561471 GCACGTA-AGGGGGACCCGACCGATCCTCGACTTGCACATTCTGCCTCTCCGGCCGACTGAACGC
66 GCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGTGC
* * * * * *
12561535 CTGCATGCCCGTTTCATGGGTTGGCTTAG
131 CCGAACGCTCATTTCGTGGGTTGGCTTAG
* * ** * * ** * * *
12561564 GCATAGAGAGTTCATTCC-ATGTCTAAG-CCCCAGTCGGATCGATGGTTGTGGCAGCGGGATCGG
1 GCATACAGAGTTCATTCCTA-GTCTAAGATCGGA-TCAGATCGAGGGTTACGGTAGCAGGATCGA
* * * * * * *
12561627 CAACACGCAGAGTGGGACCGGGCCGATCCCCGTCTTGCGCATTATGCCTCTCCGATCGACTCAGT
64 CAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGT
* * * *
12561692 GCCCGAACACTCATTTCGTGGATTGACTTAC
129 GCCCGAACGCTCATTTCGTGGGTTGGCTTAG
*
12561723 GCATACAGAGTTCATTCCTAGTCTAAGATCGGATCAGATCGAGGGTTACGGTAGTAGGATCGACA
1 GCATACAGAGTTCATTCCTAGTCTAAGATCGGATCAGATCGAGGGTTACGGTAGCAGGATCGACA
* * *
12561788 GCACGTAG-GGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCC-AGCCGACTGAGCT
66 GCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGA-CCGACTGAG-T
12561851 -CCC-ACACGCTCATTTCGTGGGTTGGCTTAG
129 GCCCGA-ACGCTCATTTCGTGGGTTGGCTTAG
*
12561881 GCATACGGAGTTCATTC
1 GCATACAGAGTTCATTC
12561898 AATGTGTAAG
Statistics
Matches: 260, Mismatches: 66, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
157 4 0.02
158 134 0.52
159 119 0.46
160 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (159 bp):
GCATACAGAGTTCATTCCTAGTCTAAGATCGGATCAGATCGAGGGTTACGGTAGCAGGATCGACA
GCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGTGC
CCGAACGCTCATTTCGTGGGTTGGCTTAG
Found at i:12562290 original size:710 final size:708
Alignment explanation
Indices: 12561344--12563009 Score: 1915
Period size: 710 Copynumber: 2.4 Consensus size: 708
12561334 TCCGGCTGGA
* * * *
12561344 TGAGCCCCCGCATGCTTGTTTCGTGGGTTGACTTAGGTATACCGAGTTCATCCCCAGTCTAAGCA
1 TGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCA
* * * ** * *
12561409 TACGGAGTTCATTCCTAGTCTAAGATAGGACCATACCGAGGGTTACGGTAGCAGGATCGACAGCA
66 TACAGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTATGGCAGCAGGATCGACAGCA
* * * * *
12561474 CGTAAGGGGGACCCGACCGAT-CCTCGACTTGCACATTCTGCCTCTCCGGCCGACTGAACGCCTG
130 CGCAAGGGGGACCGGGCCGATCCCTCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAACGCCCG
* *
12561538 CATGCCCGTTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGTCGGA-
195 CACGCCCGTTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC
* * * ** *
12561602 TCGATGGTTGTGGCAGCGGGATCGGCAACACGCAGAGTGGGACCGGGCCGATCCCCGTCTTGCGC
260 T-GAGGGTTGTGGCAGCGGGACCGGCAACACGCAGAGGGGGACCGAACCGATCCCCGGCTTGCGC
** * **
12561667 ATTATGCCTCTCCGATC-GACTCAGTGCCCGAACACTCATTTCGTGGATTGACTTACGCATACAG
324 ATTATAACTCTCCGACCAG-CTCAACGCCCGAACACTCATTTCGTGGATTGACTTACGCATACAG
* * * ** * *
12561731 AGTTCATTCCTAGTCTAAGATCGGATCAGATCGAGGGTTACGGTAGTAGGATCGACAGCACGTAG
388 AGTTCATTCCCAATCTAAGATCGGATCAGATCGAGGGTTACGGCAACAGGATCGACAGAACGAAG
* * *
12561796 GGGGGATCG-GGCTGATCCCCGGCTTGCGCATTCTGCCTCTCC-AGCCGACTGAGCT-CCCACAC
453 GGGGGACCGAGTC-GATCCCCAGCTTGCGCATTCTGCCTCTCCGA-CCGACTGAG-TGCCC-CAC
* * * *
12561858 GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTGTAAGCATACAAAGTTCA-T
514 GCTCATTTCGTGGATTGGCTTAGGCATACAGAGCTCATTCAATGTCTAAGCATACAAAGTTCATT
* ** * * **
12561922 CCCAGTCTAAGATCAGATTAGACCGAGGGTTGTGGTAACAGGACCAACAGCAAGATCGGTAGCAC
579 CCCAGTCTAAGATCAGATCAGACCGAGGGTTGAAGCAACAAGACCAACAGCAAGATCGACAGCAC
* * *
12561987 GTA-AGGGGGGACCGAGG-GGATCCTC-GACTTAT-AGATTCTACCTCTCCGACCGACCTCTCCG
644 --ACAGGGGGGACCG-GGTCGAGCCCCAG-CTTATGA-ATT-TACCTCTCCGACCGACCTCTCCG
*
12562048 ATCGAC
703 ACCGAC
* * * *
12562054 TGAG-AGCCCGTACGCTTGTTTCATGGGTTGACTTGGGCATACGGAGTTCATCCCCAGTCTAAGC
1 TGAGCA-CCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
* * * *
12562118 ATACAGAGTTCATTCCCACTCCAAGATCGGATCGGACCAAGGGTTATGGCAGTAGGATCGACAGC
65 ATACAGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTATGGCAGCAGGATCGACAGC
* * * * ** *
12562183 ACGCAAGGGGGATCGGGCCGATCCCTAG-CTTGTGCATTCTGCCTCTTCGGCCGGTTGAGCGCCC
129 ACGCAAGGGGGACCGGGCCGATCCCTCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAACGCCC
* * *
12562247 GCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA
194 GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGTCGGA
* ** * *
12562312 CTGAGGGTTGTGGCAGCGGGACCGGTAGTACGTAGAGGGGGATCGAACCGATCCCCGGCTTGCGC
259 CTGAGGGTTGTGGCAGCGGGACCGGCAACACGCAGAGGGGGACCGAACCGATCCCCGGCTTGCGC
* * * * * * * * * *
12562377 ATTATAACTTTTCGACCAGGTCAACGCCTGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
324 ATTATAACTCTCCGACCAGCTCAACGCCCGAACACTCATTTCGTGGATTGACTTACGCATACAGA
* *
12562442 GTTCATTCCCAATCTAAGATCGGATCAGATCGAGGGTTGCGGCAACAGGATCGACAGAATGAAGG
389 GTTCATTCCCAATCTAAGATCGGATCAGATCGAGGGTTACGGCAACAGGATCGACAGAACGAAGG
* * * * *
12562507 GGGGACCGAGTCGGTCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCCCACGTTCG
454 GGGGACCGAGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGTGCCCCACGCTCA
* *
12562572 TTTCGTGGATTGGCTTAGGCATACAGAGCTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAG
519 TTTCGTGGATTGGCTTAGGCATACAGAGCTCATTCAATGTCTAAGCATACAAAGTTCATTCCCAG
* * * * *
12562637 TCTAAGATCGGATCGGACCGAGGGTTGAAGCAGCAAGACCAGCAGCAGGATCGACAGCACACAGG
584 TCTAAGATCAGATCAGACCGAGGGTTGAAGCAACAAGACCAACAGCAAGATCGACAGCACACAGG
* * * * * * * *
12562702 GGGGATCGGGTCGAGCCCCAGCTTGTGCAATTTGCCTCTTCGGCCGGCCTCTTCGACCGGC
649 GGGGACCGGGTCGAGCCCCAGCTTATG-AATTTACCTCTCCGACCGACCTCTCCGACCGAC
* * *
12562763 TGAGCACCCGCACG-TTCGATTCGTGGGTTGACTTAGGCATACAGAGTCCATCCCCACTCTAAGC
1 TGAGCACCCGCACGCTT-GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
* * * * * **
12562827 ATACA-ACTTCATTCCCAGTCTAAGATCAGACAGGACTGAGGGTTGTGGCAGCAAGATCCCCAGC
65 ATACAGAGTTCATTCCCAGTCTAAGATCGGAC-GGACCGAGGGTTATGGCAGCAGGATCGACAGC
* * * * * *
12562891 ACGCAAGGGAGACCGGGCCGATCCC-CGACTTACGCATTCTGCCTCTCCGACTGACTGAATGTCC
129 ACGCAAGGGGGACCGGGCCGATCCCTCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAACGCCC
* *
12562955 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
194 GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGC
12563010 ATACAAAGTT
Statistics
Matches: 794, Mismatches: 145, Indels: 36
0.81 0.15 0.04
Matches are distributed among these distances:
707 2 0.00
708 150 0.19
709 157 0.20
710 475 0.60
711 10 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (708 bp):
TGAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCA
TACAGAGTTCATTCCCAGTCTAAGATCGGACGGACCGAGGGTTATGGCAGCAGGATCGACAGCAC
GCAAGGGGGACCGGGCCGATCCCTCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAACGCCCGC
ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACT
GAGGGTTGTGGCAGCGGGACCGGCAACACGCAGAGGGGGACCGAACCGATCCCCGGCTTGCGCAT
TATAACTCTCCGACCAGCTCAACGCCCGAACACTCATTTCGTGGATTGACTTACGCATACAGAGT
TCATTCCCAATCTAAGATCGGATCAGATCGAGGGTTACGGCAACAGGATCGACAGAACGAAGGGG
GGACCGAGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGTGCCCCACGCTCATT
TCGTGGATTGGCTTAGGCATACAGAGCTCATTCAATGTCTAAGCATACAAAGTTCATTCCCAGTC
TAAGATCAGATCAGACCGAGGGTTGAAGCAACAAGACCAACAGCAAGATCGACAGCACACAGGGG
GGACCGGGTCGAGCCCCAGCTTATGAATTTACCTCTCCGACCGACCTCTCCGACCGAC
Found at i:12563019 original size:26 final size:26
Alignment explanation
Indices: 12562982--12563034 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12562972 GTTGGCTTAG
*
12562982 GCATACAGAGTTCA-TTCCATGTCTAA
1 GCATACAAAGTTCATTTCCA-GTCTAA
12563008 GCATACAAAGTTCATTTCCAGTCTAA
1 GCATACAAAGTTCATTTCCAGTCTAA
12563034 G
1 G
12563035 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTTCCAGTCTAA
Found at i:12563386 original size:26 final size:26
Alignment explanation
Indices: 12563350--12563401 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12563340 TTGACTTAGT
12563350 CATACGGAGTTCA-TCCCTAGTCTAAG
1 CATACGGAGTTCATTCCC-AGTCTAAG
12563376 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
12563402 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:12563682 original size:158 final size:158
Alignment explanation
Indices: 12563487--12563960 Score: 440
Period size: 158 Copynumber: 3.0 Consensus size: 158
12563477 ATTCTACCTC
** ** * *
12563487 TCCGACCGATTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCT
1 TCCGACCGGCTGAGCACATGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
* *
12563552 TGTCTAAGCCCCAGCTGAACCGAGGGCTGTGGCAGCAGGACCAGCAGCACGCAGAGGGGGATCGG
66 TGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCAGGACCAGCAGCAC-CAGAGGGGGATCGG
* * * *
12563617 GCCAATCCTTGGCTTGCGCATTATGCCTT
130 GCCAATCCTCGGCTTACACATTATGCCTG
* * * * * * * * *
12563646 TTCGACCGGCTTAGCGCAT-TAGGCTCC-TTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC
1 TCCGACCGGCTGAGCACATGCACGC-CCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-C
** * * ** * * *
12563709 CA-GTCTAAG-ATCAGACTGGACTGAGGGTTGCGGCAGCAGGTTC-GAAAGCATCCA-CGGAGGA
64 CATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGCAGGACCAG-CAGCA-CCAGAGGGGGA
* * *
12563770 TCGGGCCGATCCCCGGCTTACACATTCTGCCTG
126 TCGGGCCAATCCTCGGCTTACACATTATGCCTG
* *
12563803 TCCGGCCGGCTGAGCACCTGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
1 TCCGACCGGCTGAGCACATGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
* * * * *
12563868 TGTCTAAGCCCCAG-TCGGACCGAAGGTTGTGGTAGCGGGACCAACAGCACACAGAGGGGGACCG
66 TGTCTAAGCCCCAGCT-GGACCGAGGGTTGTGGCAGCAGGACCAGCAGCAC-CAGAGGGGGATCG
* **
12563932 AGCCAATCCTCGATTTACACATTATGCCT
129 GGCCAATCCTCGGCTTACACATTATGCCT
12563961 CTTCGATTGG
Statistics
Matches: 239, Mismatches: 63, Indels: 26
0.73 0.19 0.08
Matches are distributed among these distances:
157 56 0.23
158 133 0.56
159 50 0.21
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
TCCGACCGGCTGAGCACATGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
TGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCAGGACCAGCAGCACCAGAGGGGGATCGGG
CCAATCCTCGGCTTACACATTATGCCTG
Found at i:12564168 original size:317 final size:314
Alignment explanation
Indices: 12563375--12564191 Score: 900
Period size: 316 Copynumber: 2.6 Consensus size: 314
12563365 CCTAGTCTAA
* ** * *
12563375 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGACAGCAGGATCGACA
* * * * * *
12563440 GCATGCAGGAGGGATCGAGCCGGTCCTTGGCGTGTGCATTCTACCTCTCCGACCGATTGAGCACC
66 GCACGCAGGGGGGATCG-GCCGGTCC-CGGCTTGCGCATTCTACCTCTCCGACCGGTTGAGCACC
* *
12563505 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAGCTGA
129 TGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGA
* * * * * * * * *
12563570 ACCGAGGGCTGTGGCAGCAGGACCAGCAGCACGCAGAGGGGGATCGGGCCAATCCTTGGCTTGCG
194 ACCGAAGGCTGTGGCAGCAGGACCAACAGCACACAGAGGGGGACCGAGCCAATCCTCGACTTACA
* * * * * * * *
12563635 CATTATGCCTTTTCGACCGGCTTAGCGCATTAGGCTCCTTTCGTGGGTTGACTTAT
259 CATTATGCCTCTTCGACCGGCTCAACGCAGTACGCTCATTTCATGGGTTGACTTAG
* * * *
12563691 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGTTCGAAA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGACAGCAGGATCGACA
* * * * * * * * *
12563756 GCATC-CACGGAGGATCGGGCCGATCCCCGGCTTACACATTCTGCCTGTCCGGCCGGCTGAGCAC
66 GCA-CGCAGGGGGGATC-GGCCGGT-CCCGGCTTGCGCATTCTACCTCTCCGACCGGTTGAGCAC
*
12563820 CTGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TC
128 CTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-
* * * * *
12563884 GGACCGAAGGTTGTGGTAGCGGGACCAACAGCACACAGAGGGGGACCGAGCCAATCCTCGATTTA
192 GAACCGAAGGCTGTGGCAGCAGGACCAACAGCACACAGAGGGGGACCGAGCCAATCCTCGACTTA
** * *
12563949 CACATTATGCCTCTTCGATTGGCTCAACGCCCGTACGCTTATTTCATGGGTTGACTTAG
257 CACATTATGCCTCTTCGACCGGCTCAACG-CAGTACGCTCATTTCATGGGTTGACTTAG
* * * *
12564008 GCATATAGAGTTCATTCCCAGTCTAAAATCATATTGGACTGAGGGTTGCGACAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGACAGCAGGATCGACA
* ** * * * ** *
12564073 GCACGCAGGGGGGACTTGGTTGGTGCCCAGCTTGCGTATTCTACCTCTCTGATTGGTTGAGCGCC
66 GCACGCAGGGGGGA-TCGGCCGGT-CCCGGCTTGCGCATTCTACCTCTCCGACCGGTTGAGCACC
* ** * *
12564138 TGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
129 TGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
12564192 ACATATGGAG
Statistics
Matches: 410, Mismatches: 84, Indels: 13
0.81 0.17 0.03
Matches are distributed among these distances:
315 1 0.00
316 236 0.58
317 172 0.42
318 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (314 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGGGGGGATCGGCCGGTCCCGGCTTGCGCATTCTACCTCTCCGACCGGTTGAGCACCTG
CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGAAC
CGAAGGCTGTGGCAGCAGGACCAACAGCACACAGAGGGGGACCGAGCCAATCCTCGACTTACACA
TTATGCCTCTTCGACCGGCTCAACGCAGTACGCTCATTTCATGGGTTGACTTAG
Found at i:12572362 original size:26 final size:26
Alignment explanation
Indices: 12572326--12572378 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12572316 GTTGACTTAG
12572326 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
12572352 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12572378 G
1 G
12572379 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12572836 original size:26 final size:26
Alignment explanation
Indices: 12572787--12572838 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12572777 TTGGCATAGA
*
12572787 CATACGGAGTTCATTCCATTTCTAAG
1 CATACGGAGTTCATTCCATGTCTAAG
*
12572813 CATATGGAGTTCATTCCCA-GTCTAAG
1 CATACGGAGTTCATT-CCATGTCTAAG
12572839 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATGTCTAAG
Found at i:12573496 original size:158 final size:157
Alignment explanation
Indices: 12573304--12573665 Score: 376
Period size: 157 Copynumber: 2.3 Consensus size: 157
12573294 CTGCACGTCT
* * * *
12573304 ATTTCGTGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGT
1 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAACCGAACCGAGGGT
* * *
12573369 TGTGGCAGCGA-GATCGG-CAGCACGCAGAGGGGGACCGAACCGATCCCCGAC-AGTGCATTATG
66 TGTGACAG-GAGGAT-GGACAACACGC--AGGGGGACCGAACCAATCCCCGACTAGTGCATTATG
* * *
12573431 CCT-TTCTGGCCGGCTTAGCGCCCGT-ACGGTC
127 CCTCTTC-GGCCGACTGAGCGCCC-TCACGCTC
* * * ** * *
12573462 ATTTCGTGGGTTGACTTAGGCATACGGAGATCATTCCCA-GCCTAAGATCAAACCGGACCTAGGG
1 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAAACCGAACCGAGGG
* ** * * *
12573526 TTGTGACAGTAGGATGGACAACACGCAGGGGGACCGGGCCAATCCCCGGCTTGTGCATTCTGCCT
65 TTGTGACAGGAGGATGGACAACACGCAGGGGGACCGAACCAATCCCCGACTAGTGCATTATGCCT
12573591 CTTCGGCCGACTGAGCGCCCTCACGCTC
130 CTTCGGCCGACTGAGCGCCCTCACGCTC
* * * *
12573619 ATTTTGTAGGTTGGCTTAGGCATACTGAGTTCATTCCCTGTCTAAGC
1 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12573666 ATATGGAGTT
Statistics
Matches: 166, Mismatches: 31, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
156 23 0.14
157 70 0.42
158 70 0.42
159 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAACCGAACCGAGGGT
TGTGACAGGAGGATGGACAACACGCAGGGGGACCGAACCAATCCCCGACTAGTGCATTATGCCTC
TTCGGCCGACTGAGCGCCCTCACGCTC
Found at i:12573664 original size:157 final size:155
Alignment explanation
Indices: 12573165--12573664 Score: 422
Period size: 158 Copynumber: 3.2 Consensus size: 155
12573155 CCTAATCTAA
* * ** * **
12573165 GCATACGAAGTTCATT-CCAGTCTAAGATCAGACCGGA-CTGAGGGTTACGCCAGCAGGATCAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCT-AGGGTTGTGACAG-AGGATGGAC
* * * * * * * * *
12573228 AGCACGCAGGGGGGATCGGATCGATCCTCGGCTTATGCATTTTGCCTCTCCGGTCAGA-TGGGCA
64 AGCACGCA-GGGGGACCGGACCGATCCCCGGCTTGTGCATTATGCCTCTTCGG-CCGACTGAGCG
12573292 CCCTGCACGTCTATTTCGTGGGTTGGCTTAG
127 CCCT-CACGTC-ATTTCGTGGGTTGGCTTAG
* * ** * * * * * *
12573323 GCGTAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCGAGATCGG-
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCGGACCTAGGGTTGTGACAGAG-GAT-GGA
* * * * *
12573386 CAGCACGCAGAGGGGGACCGAACCGATCCCCGAC-AGTGCATTATGCCT-TTCTGGCCGGCTTAG
63 CAGCACGC--AGGGGGACCGGACCGATCCCCGGCTTGTGCATTATGCCTCTTC-GGCCGACTGAG
*
12573449 CGCCCGT-ACGGTCATTTCGTGGGTTGACTTAG
125 CGCCC-TCAC-GTCATTTCGTGGGTTGGCTTAG
* *
12573481 GCATACGGAGATCATTCCCAGCCTAAGATCAAACCGGACCTAGGGTTGTGACAGTAGGATGGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCTAGGGTTGTGACAG-AGGATGGACA
* * * *
12573546 ACACGCAGGGGGACCGGGCCAATCCCCGGCTTGTGCATTCTGCCTCTTCGGCCGACTGAGCGCCC
65 GCACGCAGGGGGACCGGACCGATCCCCGGCTTGTGCATTATGCCTCTTCGGCCGACTGAGCGCCC
* *
12573611 TCACGCTCATTTTGTAGGTTGGCTTAG
130 TCACG-TCATTTCGTGGGTTGGCTTAG
* *
12573638 GCATACTGAGTTCATTCCCTGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
12573665 CATATGGAGT
Statistics
Matches: 266, Mismatches: 59, Indels: 35
0.74 0.16 0.10
Matches are distributed among these distances:
156 22 0.08
157 71 0.27
158 93 0.35
159 59 0.22
160 20 0.08
161 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCTAGGGTTGTGACAGAGGATGGACAG
CACGCAGGGGGACCGGACCGATCCCCGGCTTGTGCATTATGCCTCTTCGGCCGACTGAGCGCCCT
CACGTCATTTCGTGGGTTGGCTTAG
Found at i:12574023 original size:26 final size:26
Alignment explanation
Indices: 12573993--12574045 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12573983 GTTGACTTAG
12573993 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
12574019 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12574045 G
1 G
12574046 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12574547 original size:159 final size:159
Alignment explanation
Indices: 12574138--12574549 Score: 402
Period size: 159 Copynumber: 2.6 Consensus size: 159
12574128 TCTCCGGTCG
* **
12574138 GCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
* * * * * * *
12574203 CCCCAGTCGGATCGAGGGTTGTGGCAGCGGGACTGGCACCACGTAGAGGGGGACCGGGCTGATCT
66 CCCCAGTCGGATCAAGGGTTGTGGTAGCAGGACTGGCACCACGAAGAGGGGGACCAGACCGATCT
* * * *
12574268 CCGGTTTGTGCATTATGCCTCTTCGGTCG
131 CCGGCTTGCGCATTATGCCTCTTCGGCCA
* * *** * * *
12574297 GCTCAGTGATTGCACGCTCGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCA-ATCTAA
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAA
**** * ** * * *
12574361 G-ATGGGACCGGATCAAAAGTTGCGGTAGCAGGATTGGCAGCACGCAAG-GGGGGACCAGACCGA
65 GCCCCAG-TCGGATCAAGGGTTGTGGTAGCAGGACTGGCACCACG-AAGAGGGGGACCAGACCGA
* *
12574424 TC-CTTGGCTTGCGCATTCTGCCTC-TCTGGCCA
128 TCTC-CGGCTTGCGCATTATGCCTCTTC-GGCCA
* *
12574456 GTTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
* *
12574521 CCCCAGTCGAACCAAGGGTTGTGGTAGCA
66 CCCCAGTCGGATCAAGGGTTGTGGTAGCA
12574550 AGACCGACAG
Statistics
Matches: 192, Mismatches: 54, Indels: 14
0.74 0.21 0.05
Matches are distributed among these distances:
158 7 0.04
159 179 0.93
160 6 0.03
ACGTcount: A:0.18, C:0.25, G:0.32, T:0.25
Consensus pattern (159 bp):
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
CCCCAGTCGGATCAAGGGTTGTGGTAGCAGGACTGGCACCACGAAGAGGGGGACCAGACCGATCT
CCGGCTTGCGCATTATGCCTCTTCGGCCA
Found at i:12574985 original size:159 final size:158
Alignment explanation
Indices: 12574691--12575193 Score: 473
Period size: 159 Copynumber: 3.2 Consensus size: 158
12574681 CCTAGTCTAA
* * * * * ** * * **
12574691 GCATAC-GAAGTTCATTCTCAGTCTAAGATCAGATCGAAACAAGGGTTACGGCAGCAAGATCGGT
1 GCATACAG-AGTTCATTCCCAGTCTAAGACCAGACCGGACCAAGGGTTGTGGCAGCAGGACCGAC
* * *
12574755 AGCACGCAGAGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCCATCGACTGAGTGC
65 AGCACGCAGAGGGGACCGAGCCGATCCTCGGCTTGCACATTATGCCTCTCCCATCGACTCAGTGC
* *
12574820 CCGTACGCCCGTTTCATGGGTTGGCTTAG
130 CCGTACGCCCATTTCATGGGTTGACTTAG
** * * *
12574849 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCAAGGGTTGTGGTAGCGGGACCGA
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ACCAGACCGGACCAAGGGTTGTGGCAGCAGGACCGA
* * *
12574912 CAGCACGCAGAGGTGGACCGAGCCGAT-CTCCGGCTTGCACATTATGCCTCTTCGATCGGCTCAG
64 CAGCACGCAGAGG-GGACCGAGCCGATCCT-CGGCTTGCACATTATGCCTCTCCCATCGACTCAG
* *
12574976 TGCCCGTACGCTCATTTCATGGGTTGACTTAT
127 TGCCCGTACGCCCATTTCATGGGTTGACTTAG
* * * *
12575008 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGACCAGACCGGACCAAGGGTTGTGGCAGCAGGACCGACA
* * * * * * *
12575073 GCACGCAGTGGGGGACCGGGCTGATCCTCGGCTTGCACATTCTACCTCTCTGGCCA--G-CTGAA
66 GCACGCAG-AGGGGACCGAGCCGATCCTCGGCTTGCACATTATGCCTCTC---CCATCGACTCAG
* * * * * *
12575135 CGCTCGCACGTCCGTTTCGTGGGTTGACTTAG
127 TGCCCGTACGCCCATTTCATGGGTTGACTTAG
12575167 GCATACAGAGTTCA-TCCCTAGTCTAAG
1 GCATACAGAGTTCATTCCC-AGTCTAAG
12575194 CATACGGAGT
Statistics
Matches: 281, Mismatches: 51, Indels: 25
0.79 0.14 0.07
Matches are distributed among these distances:
157 2 0.01
158 61 0.22
159 208 0.74
160 8 0.03
162 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGACCAGACCGGACCAAGGGTTGTGGCAGCAGGACCGACA
GCACGCAGAGGGGACCGAGCCGATCCTCGGCTTGCACATTATGCCTCTCCCATCGACTCAGTGCC
CGTACGCCCATTTCATGGGTTGACTTAG
Found at i:12575079 original size:673 final size:671
Alignment explanation
Indices: 12573671--12575194 Score: 1912
Period size: 673 Copynumber: 2.3 Consensus size: 671
12573661 TAAGCATATG
* * * *
12573671 GAGTTCATTCCCAGTTTAAGATCGGATCGAACCGAGGGTTGCGGCAGTAGGATCGGTAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCA
* * * * * * * * * *
12573736 GGGGGGATCGGGTCGATCCCCAGTTTGCGCATTCTACCTCTCCGACC-GACTGAGCACTGGCACA
66 GGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTCTGGCCAG-CTGAGCGCTCGCACG
* * * *
12573800 CTCATTTCATGGGTTGGTTTAGGCATAC-GAAATTCATTCCATGTCTAAGCCCCAGTCGAACCGA
130 CTCGTTTCGTGGGTTGGCTTAGGCATACAG-AGTTCATTCCATGTCTAAGCCCCAGTCGAACCGA
* * * *
12573864 AGGTTATGGCAGCAGGACCGGCAGCGAGATCGGCAGCACGCAGAGTGGGACCGTGCTGATCCCCG
194 AGGTTATGGCAGCAAGACCGACAGCGAGATCGGCAGCACGCAGAGTGGGACCGGGCTGATACCCG
* * * *
12573929 ACTTATGTATTATGCCTTTCCGATCGGCTGAACACCTGCACGCTCGTTTCATGGGTTGACTTAGG
259 ACTTATGCATTATGCCTCTCCAATCGGCTGAACACCCGCACGCTCGTTTCATGGGTTGACTTAGG
** * *
12573994 CATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGGACC
324 CATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGAAAC
* * * * * * * *
12574059 GAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGCGATCGGGCAGGTCCCCGGCTTATGCATTC
389 AAGGGTTACGGCAGCAAGATCGACAGCACGCAGGGCGACCGAGCAGATCCCCGGCTTACGCATTC
* ** * * *
12574124 TATCTCTCCGGTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTC
454 TACCTCTCCCATCGACTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTC
* * * * * *
12574189 ATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCGGGACTGGCACCACGTAGAGGGG
519 ATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCGGGACCGACACCACGCAGAGGGG
* * * ** * ** *
12574254 GACCGGGCTGATCTCCGGTTTGTGCATTATGCCTCTTCGGTCGGCTCAGTGATTGCACGCTCGTT
584 GACCGAGCCGATCTCCGGCTTGCACATTATGCCTCTTCGATCGGCTCAGTGACCGCACGCTCATT
*
12574319 TCGTGGGTTGACTTATGCATACA
649 TCATGGGTTGACTTATGCATACA
* * * * ** * * *
12574342 GAGTTCATTCCCAATCTAAGATGGGACCGGATCAAAAGTTGCGGTAGCAGGATTGGCAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGC-
* * * * * *
12574407 AGGGGGGACCAGACCGATCCTTGGCTTGCGCATTCTGCCTCTCTGGCCAGTTGAGCGCCCGCACG
65 AGGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTCTGGCCAGCTGAGCGCTCGCACG
*
12574472 CTCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGAACC-AA
130 CTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAA
* * * * *
12574536 GGGTTGTGGTAGCAAGACCGACAGTGGGATCGGTAGCACGCAGAG-GGGAACCGGGCTGATACCC
195 -GGTTATGGCAGCAAGACCGACAGCGAGATCGGCAGCACGCAGAGTGGG-ACCGGGCTGATACCC
* * * * *
12574600 -ATCTTGTGCATTATGCCTCTCTAATCGGTTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTC
258 GA-CTTATGCATTATGCCTCTCCAATCGGCTGAACACCCGCACGCTCGTTTCATGGGTTGACTTA
* *
12574664 GGCATACAGAGTTCATCCCTAGTCTAAGCATAC-GAAGTTCATTCTCAGTCTAAGATCAGATCGA
322 GGCATACAGAGTTCATCCCCAGTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATCAGATCGA
** * * * *
12574728 AACAAGGGTTACGGCAGCAAGATCGGTAGCACGCAGAGGGGACCGAGCCGATCCTCGGCTTGCGC
386 AACAAGGGTTACGGCAGCAAGATCGACAGCACGCAG-GGCGACCGAGCAGATCCCCGGCTTACGC
* *
12574793 ATTCTGCCTCTCCCATCGACTGAGTGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGA
450 ATTCTACCTCTCCCATCGACTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGA
* *
12574858 GTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGTAGCGGGACCGACAGCACGCAGA
515 GTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCGGGACCGACACCACGCAGA
* * *
12574923 GGTGGACCGAGCCGATCTCCGGCTTGCACATTATGCCTCTTCGATCGGCTCAGTGCCCGTACGCT
580 GGGGGACCGAGCCGATCTCCGGCTTGCACATTATGCCTCTTCGATCGGCTCAGTGACCGCACGCT
12574988 CATTTCATGGGTTGACTTATGCATACA
645 CATTTCATGGGTTGACTTATGCATACA
* * *
12575015 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCA
* * *
12575080 GTGGGGGACCGGGCTGATCCTCGGCTTGCACATTCTACCTCTCTGGCCAGCTGAACGCTCGCACG
66 G-GGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTCTGGCCAGCTGAGCGCTCGCACG
* *
12575145 -TCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA-TCCCTAGTCTAAGC
130 CT-CGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCAT-GTCTAAGC
12575195 ATACGGAGTT
Statistics
Matches: 717, Mismatches: 125, Indels: 20
0.83 0.15 0.02
Matches are distributed among these distances:
671 58 0.08
672 298 0.42
673 361 0.50
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (671 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCA
GGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTACCTCTCTGGCCAGCTGAGCGCTCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAAG
GTTATGGCAGCAAGACCGACAGCGAGATCGGCAGCACGCAGAGTGGGACCGGGCTGATACCCGAC
TTATGCATTATGCCTCTCCAATCGGCTGAACACCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
TACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGAAACAA
GGGTTACGGCAGCAAGATCGACAGCACGCAGGGCGACCGAGCAGATCCCCGGCTTACGCATTCTA
CCTCTCCCATCGACTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
TCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCGGGACCGACACCACGCAGAGGGGGA
CCGAGCCGATCTCCGGCTTGCACATTATGCCTCTTCGATCGGCTCAGTGACCGCACGCTCATTTC
ATGGGTTGACTTATGCATACA
Found at i:12575203 original size:26 final size:26
Alignment explanation
Indices: 12575167--12575219 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12575157 GTTGACTTAG
12575167 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
* *
12575193 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
12575219 G
1 G
12575220 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:12575524 original size:501 final size:501
Alignment explanation
Indices: 12574629--12575694 Score: 1315
Period size: 501 Copynumber: 2.1 Consensus size: 501
12574619 TCTAATCGGT
*
12574629 TGAACGCCCGCACGCTCGTTTCATGGGTTGACTTCGGCATACAGAGTTCATCCCTAGTCTAAGCA
1 TGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGCA
* **
12574694 TACGAAGTTCATTCTCAGTCTAAGATCAGATCGAAACAAGGGTTACGGCAGCAAGATCGGTAGCA
66 TACGAAGTTCATTCTCAGTCTAAGATCAGATCCAAACAAGGGTTACGGCAGCAAGATCGACAGCA
* * * * * **
12574759 CGCAGAGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCCATCGACTGAGTGCCCGT
131 CGCAGAGGGGACAGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCCAACCACTGAGCACCCGT
* * *
12574824 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
196 ACACCCGTTTCATGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACC
12574889 AAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGTGGACCGAGCCGATCTCCGGCTTGCACAT
261 AAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGTGGACCGAGCCGATCTCCGGCTTGCACAT
* * * **
12574954 TATGCCTCTTCGATCGGCTCAGTGCCCGTACGCTCATTTCATGGGTTGACTTATGCATACAGAGT
326 TATACCTCTTCGACCGGCTCAATGCCCAAACGCTCATTTCATGGGTTGACTTATGCATACAGAGT
* * * *
12575019 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGTGG
391 TCATTACCAGTCTAAAATCAGACCGGACCGAGGGTTATGGCAGTAGGATCGACAGCACGAAG-GG
* * *
12575084 GGGACCGGGCTGATCCTCGGCTTGCACATTCTACCTCTCTGGCCAGC
455 GGGACCAGACTGATCCTCAGCTTGCACATTCTACCTCTCTGGCCAGC
* *
12575131 TGAACGCTCGCACG-TCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGC
1 TGAACGCCCGCACGCT-CGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGC
* * * * * *
12575195 ATACGGAGTTCATTC-CTAGTCTAAGATCAGA-CCAGACTGAGGGTTACGTCAGTAGGATCGACA
65 ATACGAAGTTCATTCTC-AGTCTAAGATCAGATCCAAAC-AAGGGTTACGGCAGCAAGATCGACA
* *
12575258 GCACGCAGA-GGGACAGAGCCGATCCCCGACTTGTGCATTCTGCC-CTTCCAACCAGCTGAGCAC
128 GCACGCAGAGGGGACAGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCCAACCA-CTGAGCAC
* * *
12575321 CCGTACACCCGTTTCGTGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAATCG
192 CCGTACACCCGTTTCATGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCG
* * * * * * * *
12575386 GACCGAGGGTTGTGGTAGTGGGATCGGCAGTACGTAGAAGG-GGATCCG-GTCGATCTTCGGCTT
257 GACCAAGGGTTGTGGTAGCGGGACCGACAGCACGCAG-AGGTGGA-CCGAGCCGATCTCCGGCTT
** * * * *
12575449 GCGTATTATACCTTTTC-AGCCGGCTCAATGCTCAAACGCTCGTTTCGTGGGTTGACTTATGCAT
320 GCACATTATACCTCTTCGA-CCGGCTCAATGCCCAAACGCTCATTTCATGGGTTGACTTATGCAT
* * * * *
12575513 ACGGAGTTCATTACCAGTCTAAAATCAGACTGGATCGAGGGTTATGGTAGTAGGATCTACAGCAC
384 ACAGAGTTCATTACCAGTCTAAAATCAGACCGGACCGAGGGTTATGGCAGTAGGATCGACAGCAC
* * * * ** *
12575578 GAAGGGGGGATCAGACTGATCCTCAGTTTTCACATTCTGCCTCTC-CACCTGAC
449 GAAGGGGGGACCAGACTGATCCTCAGCTTGCACATTCTACCTCTCTGGCCAG-C
** * * * ** *
12575631 TGAGTGCCCGTACGCTCGTTTCTTGGGTTGGCTTAGGCATATGGAGTTCATTCC-ATGTCTAAGC
1 TGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCTA-GTCTAAGC
12575695 CCCGGCCGAA
Statistics
Matches: 480, Mismatches: 74, Indels: 22
0.83 0.13 0.04
Matches are distributed among these distances:
499 4 0.01
500 94 0.20
501 261 0.54
502 121 0.25
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.25
Consensus pattern (501 bp):
TGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGCA
TACGAAGTTCATTCTCAGTCTAAGATCAGATCCAAACAAGGGTTACGGCAGCAAGATCGACAGCA
CGCAGAGGGGACAGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCCAACCACTGAGCACCCGT
ACACCCGTTTCATGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACC
AAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGTGGACCGAGCCGATCTCCGGCTTGCACAT
TATACCTCTTCGACCGGCTCAATGCCCAAACGCTCATTTCATGGGTTGACTTATGCATACAGAGT
TCATTACCAGTCTAAAATCAGACCGGACCGAGGGTTATGGCAGTAGGATCGACAGCACGAAGGGG
GGACCAGACTGATCCTCAGCTTGCACATTCTACCTCTCTGGCCAGC
Found at i:12575711 original size:158 final size:157
Alignment explanation
Indices: 12575484--12576008 Score: 454
Period size: 158 Copynumber: 3.3 Consensus size: 157
12575474 CAATGCTCAA
* * * * * *** *
12575484 ACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTACCA-GTCTAAAATCAGA-CTGGA
1 ACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATT-CCATGTCTAAGCCCAGAGC-AGA
* * * * * * * *
12575547 TCGAGGGTTATGGTAGTAGGATCTACAGCACGAAGGGGGGATCAGACTGATCCTCAGTTTTCACA
64 ACGAGGGTTGTGGCAGCAGGATCGACAGCACGAAGGGGGGATC-GGCTGATCCTCAGCTTTCGCA
* *
12575612 TTCTGCCTCTCC-ACCTGACTGAGTGCCCGT
128 TTCTGCCTCTCCGA-CTGGCTGAGTGCCCGC
* * * * * *
12575642 ACGCTCGTTTCTTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCG-GCCGAAC
1 ACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCAGAGCAGAAC
* * * * *
12575706 TGAGGGTTGTGGCAGCGGGACCGACAGCACGGAGAGGGGGATCGGGCTGATCC-CTGGC-TTGGC
66 -GAGGGTTGTGGCAGCAGGATCGACAGCACGAAG-GGGGGATC-GGCTGATCCTC-AGCTTTCGC
* * *
12575769 ATTATGCCTCTCCGACTGGCTCAGTGCCTGC
127 ATTCTGCCTCTCCGACTGGCTGAGTGCCCGC
* * * ** * *
12575800 ACGCTCTTTTCATGGGTTGACTTAGGCATACGAAGTTTATTCCA-GTCTAAGGTCAGATCAGATC
1 ACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCAGAGCAGAAC
* * * * * * *
12575864 AAGGGTTGCGGCAACAGGATCGACAGCACAAAAGAGGGGATCGGGTCGATCCTCAGCTTGCGCAT
66 GAGGGTTGTGGCAGCAGGATCGACAGCAC-GAAGGGGGGATCGGCT-GATCCTCAGCTTTCGCAT
*
12575929 TCTGCCTCTCCGA-TCGGCTGAGCGCCCGC
129 TCTGCCTCTCCGACT-GGCTGAGTGCCCGC
*
12575958 ACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
1 ACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
12576009 ACATACGGAG
Statistics
Matches: 294, Mismatches: 60, Indels: 25
0.78 0.16 0.07
Matches are distributed among these distances:
156 3 0.01
157 54 0.18
158 213 0.72
159 24 0.08
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.26
Consensus pattern (157 bp):
ACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCAGAGCAGAAC
GAGGGTTGTGGCAGCAGGATCGACAGCACGAAGGGGGGATCGGCTGATCCTCAGCTTTCGCATTC
TGCCTCTCCGACTGGCTGAGTGCCCGC
Found at i:12575831 original size:316 final size:313
Alignment explanation
Indices: 12575193--12576008 Score: 776
Period size: 316 Copynumber: 2.6 Consensus size: 313
12575183 CCTAGTCTAA
* *
12575193 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGA-CTGAGGGTTACGTCAGTAGGATCGAC
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACTAGATC-GAGGGTTAGGT-AGTAGGATCGAC
* * * * * *
12575257 AGCACGCA-GAGGGA-CAGAGCCGATCCCCGACTTGT-GCATTCTGCC-CTTCCAACCAGCTGAG
63 AGCACGAAGGGGGGATCAGA-CTGATCCTC-AGTTTTCGCATTCTGCCTC-TCCAACC-GCTGAG
* * * * * *
12575318 CACCCGTACACCCGTTTCGTGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAA
124 CGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAA
* * * * * * * * *
12575383 TCGGACCGAGGGTTGTGGTAGTGGGATCGGCAGTACGTAGAAGGGGATCCGGTCGATCTTCGGCT
189 CCGAACCGAGGGTTGTGGCAGCGGGACCGACAGCACGGAGAAGGGGATCCGGTCGATCCTCGGCT
* * * * *
12575448 TGCGTATTATACCTTTTCAGCCGGCTCAATGCTCAAACGCTCGTTTCGTGGGTTGACTTAT
254 TGCGCATTATACCTCTCCAGCCGGCTCAATGCTC-AACGCTCGTTTCATGGGTTGACTTAG
* * *
12575509 GCATACGGAGTTCATTACCAGTCTAAAATCAGACTGGATCGAGGGTTATGGTAGTAGGATCTACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACTAGATCGAGGGTTA-GGTAGTAGGATCGACA
* *
12575574 GCACGAAGGGGGGATCAGACTGATCCTCAGTTTTCACATTCTGCCTCTCC-ACCTGACTGAGTGC
64 GCACGAAGGGGGGATCAGACTGATCCTCAGTTTTCGCATTCTGCCTCTCCAACC-G-CTGAGCGC
* * **
12575638 CCGTACGCTCGTTTCTTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCGGCCG
127 CCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCG
* * *
12575703 AACTGAGGGTTGTGGCAGCGGGACCGACAGCACGGAGAGGGGGAT-CGGGCTGATCC-CTGGCTT
192 AACCGAGGGTTGTGGCAGCGGGACCGACAGCACGGAGAAGGGGATCCGGTC-GATCCTC-GGCTT
* * * *
12575766 G-GCATTATGCCTCTCC-GACTGGCTCAGTGCCTGC-ACGCTCTTTTCATGGGTTGACTTAG
255 GCGCATTATACCTCTCCAG-CCGGCTCAATG-CT-CAACGCTCGTTTCATGGGTTGACTTAG
* * * * * * **
12575825 GCATACGAAGTTTATTCCAGTCTAAGGTCAGA-TCAGATCAAGGGTTGCGGCAACAGGATCGACA
1 GCATACGGAGTTCATTCCAGTCTAAGATCAGACT-AGATCGAGGGTT-AGGTAGTAGGATCGACA
* * ** * * * *
12575889 GCACAAAAGAGGGGATC-GGGTCGATCCTCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
64 GCAC-GAAGGGGGGATCAGACT-GATCCTCAGTTTTCGCATTCTGCCTCTCC-AACCGCTGAGCG
* * *
12575953 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
126 CCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
12576009 ACATACGGAG
Statistics
Matches: 411, Mismatches: 70, Indels: 38
0.79 0.13 0.07
Matches are distributed among these distances:
314 1 0.00
315 43 0.10
316 220 0.54
317 140 0.34
318 7 0.02
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.25
Consensus pattern (313 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACTAGATCGAGGGTTAGGTAGTAGGATCGACAGC
ACGAAGGGGGGATCAGACTGATCCTCAGTTTTCGCATTCTGCCTCTCCAACCGCTGAGCGCCCGT
ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACC
GAGGGTTGTGGCAGCGGGACCGACAGCACGGAGAAGGGGATCCGGTCGATCCTCGGCTTGCGCAT
TATACCTCTCCAGCCGGCTCAATGCTCAACGCTCGTTTCATGGGTTGACTTAG
Found at i:12576020 original size:26 final size:25
Alignment explanation
Indices: 12575983--12576113 Score: 163
Period size: 26 Copynumber: 5.0 Consensus size: 25
12575973 GTTGGCTTAG
*
12575983 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
* *
12576009 ACATACGGAGTTCATCCTCAGTCTAA
1 GCATACGGAGTTCATTC-CAGTCTAA
*
12576035 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATTCC-AGTCTAA
*
12576061 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATT-CCAGTCTAA
*
12576087 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTC-CAGTCTAA
12576113 G
1 G
12576114 ATCAGACCAG
Statistics
Matches: 93, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
25 2 0.02
26 87 0.94
27 4 0.04
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:12576598 original size:26 final size:26
Alignment explanation
Indices: 12576562--12576614 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12576552 GTTGGCTTAG
12576562 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12576588 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12576614 G
1 G
12576615 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12577849 original size:26 final size:26
Alignment explanation
Indices: 12577813--12577865 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12577803 GTTGACTTAG
12577813 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12577839 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12577865 G
1 G
12577866 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12578257 original size:47 final size:47
Alignment explanation
Indices: 12578188--12578282 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
12578178 TGATATCTAA
12578188 ACAAATAATCGTAAGCCATGGTTAGTCCCAAGCATTCACAATAAGAC
1 ACAAATAATCGTAAGCCATGGTTAGTCCCAAGCATTCACAATAAGAC
12578235 ACAAATAATCGTAAGCCATGGTTAGTCCCAAGCATTCACAATAAGAC
1 ACAAATAATCGTAAGCCATGGTTAGTCCCAAGCATTCACAATAAGAC
12578282 A
1 A
12578283 TAATATATCG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.41, C:0.23, G:0.15, T:0.21
Consensus pattern (47 bp):
ACAAATAATCGTAAGCCATGGTTAGTCCCAAGCATTCACAATAAGAC
Found at i:12582378 original size:26 final size:26
Alignment explanation
Indices: 12582342--12582394 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12582332 GTTGGCTTAG
12582342 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12582368 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12582394 G
1 G
12582395 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12583056 original size:158 final size:158
Alignment explanation
Indices: 12582792--12583091 Score: 356
Period size: 158 Copynumber: 1.9 Consensus size: 158
12582782 CCAGACCGAA
* * * * * *
12582792 GGTTGTGGCAGCAGGATCGACAACACGCAGGGGGTATCAGGCCGATCCTCAGCTTGCGCATTCTG
1 GGTTGTGGCAGCAGGACCGACAACACGCAGGGGGGACCAGGCCAATCCTCAGCTTACGCATTATG
* * *
12582857 CCTCTCCGGTCGACTGAGTGCCCACACGCCCATTTCATGGGTT-AGCTTAGGCATA-GGGGTTCA
66 CCTCTCCGGTCGACTCAGCGCCCACACGCCCATTTCATGGGTTGA-CTTAGGCATACGGAGTTCA
*
12582920 CTT-CGTGTCTAAGCCCCAGCCAGATTGAG
130 -TTCCATGTCTAAGCCCCAGCCAGATTGAG
* * *
12582949 GGTTGTGGCAGC-GAGACCGACAGCACGCAGAGGGGGACCGGGCCAATCCTCGGCTTACGCATTA
1 GGTTGTGGCAGCAG-GACCGACAACACGCAG-GGGGGACCAGGCCAATCCTCAGCTTACGCATTA
* * * * * * *
12583013 TGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTC
64 TGCCTCTCCGGTCGACTCAGCGCCCACACGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTC
12583078 ATTCCATGTCTAAG
129 ATTCCATGTCTAAG
12583092 ATCAGACTGG
Statistics
Matches: 118, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
156 1 0.01
157 26 0.22
158 74 0.63
159 17 0.14
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (158 bp):
GGTTGTGGCAGCAGGACCGACAACACGCAGGGGGGACCAGGCCAATCCTCAGCTTACGCATTATG
CCTCTCCGGTCGACTCAGCGCCCACACGCCCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCCCCAGCCAGATTGAG
Found at i:12583259 original size:26 final size:26
Alignment explanation
Indices: 12583220--12583273 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
12583210 TTGGTTGGCT
12583220 TAGGCATACAGAGTTCATTCCAT-GTC
1 TAGGCATACAGAGTTCATT-CATAGTC
* *
12583246 TAGGCATGCGGAGTTCATTCATAGTC
1 TAGGCATACAGAGTTCATTCATAGTC
12583272 TA
1 TA
12583274 AGATTTTGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.31
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCATAGTC
Found at i:12584321 original size:26 final size:26
Alignment explanation
Indices: 12584285--12584340 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
12584275 TGGTTTGGCT
12584285 TAAGCAGACGGAGTTCATT-CCATGTC
1 TAAGCAGACGGAGTTCATTCCCA-GTC
*
12584311 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCAGACGGAGTTCATTCCCAGTC
12584337 TAAG
1 TAAG
12584341 ATCGGACCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
TAAGCAGACGGAGTTCATTCCCAGTC
Found at i:12584706 original size:26 final size:26
Alignment explanation
Indices: 12584669--12584721 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
12584659 GTTGACTTAG
12584669 GCATACAGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
*
12584695 GCATAC-GTAGTTTATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
12584721 G
1 G
12584722 ATCAGATGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.88
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12585005 original size:159 final size:158
Alignment explanation
Indices: 12584833--12585225 Score: 416
Period size: 158 Copynumber: 2.5 Consensus size: 158
12584823 CTTGCATGCC
* * * * * *
12584833 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAGTCGGACCGAGGG
1 CATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
** * ** *
12584898 TTGTGGCAGCGGGATCGGCAGCACGCAGAGAGGGATTGGGCC-GATCCCCGGCTTGCGCATTATG
66 TTGTGGCAGCAAGATCGACAGCACGCAGA-AGGGACCGGGCCAG-TCCCCAGCTTGCGCATTATG
* *
12584962 CCTCTCCAGCAGGCTCAGCGCTCGAATGCTT
129 CCTCTCCAGCAGGATCAGCGCCCGAATG-TT
* ****
12584993 -ATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-ATTGGACCAGACCGAG
1 CATTTCATGGGTTGGCTTAGGCATACGAAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAG
* * * * * *
12585055 GGTTGCGGTAGCAAGATCGACAGCATGCAGATGGGACCGGGTCAGTCCCCAGCTTGCGCATTCTG
64 GGTTGTGGCAGCAAGATCGACAGCACGCAGAAGGGACCGGGCCAGTCCCCAGCTTGCGCATTATG
* * * *
12585120 CCTCTCCGGCTGGATGAGCGCCCGCATGTT
129 CCTCTCCAGCAGGATCAGCGCCCGAATGTT
* * **
12585150 CGTTTCATGGGTTGGCTTGGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCAGATTGAGGG
1 CATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
12585215 TTGTGGCAGCA
66 TTGTGGCAGCA
12585226 GGACCAGTAA
Statistics
Matches: 187, Mismatches: 40, Indels: 14
0.78 0.17 0.06
Matches are distributed among these distances:
157 5 0.03
158 107 0.57
159 73 0.39
160 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
CATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
TTGTGGCAGCAAGATCGACAGCACGCAGAAGGGACCGGGCCAGTCCCCAGCTTGCGCATTATGCC
TCTCCAGCAGGATCAGCGCCCGAATGTT
Found at i:12585207 original size:158 final size:158
Alignment explanation
Indices: 12584753--12585225 Score: 468
Period size: 159 Copynumber: 3.0 Consensus size: 158
12584743 TGACAGTAGT
** * * ** *
12584753 ATCGACAGCATGCAGGGGGGACCGGGCTGATCCCTGGCTTATGCATTCTGCCTCTCTAGCTGGCT
1 ATCGACAGCATGCAGAAGGGACCGGGCAGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCTGGCT
* * ** * * * *
12584818 GAGCACTTGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGCCC
66 GAGCGCTCGCATGTTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCC
* * * **
12584883 CAGTCGGACCGAGGGTTGTGGCAGCGGG
131 CAGCCAGACCGAGGGTTGCGGCAGCAAG
* * ** * * *
12584911 ATCGGCAGCACGCAGAGAGGGATTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAGCAGGC
1 ATCGACAGCATGCAGA-AGGGACCGGGCAGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCTGGC
* * *
12584976 TCAGCGCTCGAATGCTT-ATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG
65 TGAGCGCTCGCATG-TTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATT-CCATGTCTAAG
**** *
12585039 -ATTGGACCAGACCGAGGGTTGCGGTAGCAAG
128 CCCCAG-CCAGACCGAGGGTTGCGGCAGCAAG
* * * *
12585070 ATCGACAGCATGCAGATGGGACCGGGTCAG-TCCCCAGCTTGCGCATTCTGCCTCTCCGGCTGGA
1 ATCGACAGCATGCAGAAGGGACCGGG-CAGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCTGGC
* * *
12585134 TGAGCGCCCGCATGTTCGTTTCATGGGTTGGCTTGGGCATACGAAGTTCATTCCATGTCTAAGCC
65 TGAGCGCTCGCATGTTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCC
** *
12585199 CCAGCCAGATTGAGGGTTGTGGCAGCA
130 CCAGCCAGACCGAGGGTTGCGGCAGCA
12585226 GGACCAGTAA
Statistics
Matches: 248, Mismatches: 59, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
157 5 0.02
158 119 0.48
159 122 0.49
160 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
ATCGACAGCATGCAGAAGGGACCGGGCAGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCTGGCT
GAGCGCTCGCATGTTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCC
CAGCCAGACCGAGGGTTGCGGCAGCAAG
Found at i:12585594 original size:21 final size:21
Alignment explanation
Indices: 12585568--12585608 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
12585558 AAGTTCCAGC
12585568 CGGACGGAGGGTTGTGGCAGT
1 CGGACGGAGGGTTGTGGCAGT
12585589 CGGACGGAGGGTTGTGGCAG
1 CGGACGGAGGGTTGTGGCAG
12585609 CGGGACCGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.54, T:0.17
Consensus pattern (21 bp):
CGGACGGAGGGTTGTGGCAGT
Found at i:12585902 original size:26 final size:26
Alignment explanation
Indices: 12585853--12585905 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12585843 GTTGGCTTAG
*
12585853 GCATACAGAGTTCATTGCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
12585879 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
12585905 G
1 G
12585906 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:12587705 original size:158 final size:158
Alignment explanation
Indices: 12587408--12587974 Score: 495
Period size: 159 Copynumber: 3.6 Consensus size: 158
12587398 TACCACCCGT
* * * * *
12587408 TCGATCCCCGGGTTGCGCATCCTGCCTC-TCTGGTCGGCTGGGCGTCCGCACGCTCGTTTCATGG
1 TCGATCCTCGGCTTGCGCATTCTGCCTCTTC-GGTCGGCTGAGCGCCCGCACGCTCGTTTCATGG
* * * * ** * * *
12587472 GTTGACTTAGGCATATGTAGTTCATTCCCAGTCTAAGATCAGATTGGACTGAGGGTTGTAGTAGT
65 GTTGACTTAGGCATACGGAGTTCATT-CCAGGCTAAGACCAGACCGAACTGAGGGTTGTAGCAGC
12587537 AGGATCGACAGC-ACGCAG-GGGGGACCGAG
129 AGGATCGACAGCAAC-CAGAGGGGGACCGAG
* * *
12587566 TCGATCCTCGGCTTGCGCATTCTGCCCCTTCGGTCGGCTGAGCGCCCGCACGCCCGTTTCGTGGG
1 TCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
* * * *
12587631 TTGGCTTAGGCATAGGGAGTTCATTCCATGGCTAAGCCCCAG-CCGAACTGAGGGTTGTGGCAGC
66 TTGACTTAGGCATACGGAGTTCATTCCA-GGCTAAG-ACCAGACCGAACTGAGGGTTGTAGCAGC
* ** *
12587695 GGGA-CTGACAGCAACCAGAGGGGGATTGGG
129 AGGATC-GACAGCAACCAGAGGGGGACCGAG
* * * * *
12587725 TCGATCCTCGGCTTGCGCATTAC-GGCTCTTCGATCGGCTCAGAGCCCACACGCTCGTTTCATGG
1 TCGATCCTCGGCTTGCGCATT-CTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGG
* * * * **
12587789 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAA-TCGAGGGTTCCAGCAG
65 GTTGACTTAGGCATACGGAGTTCATT-CCAGGCTAAGACCAGACCGAACT-GAGGGTTGTAGCAG
** * *
12587853 CAGGATCGACAGCATGCAG-GGGCGGATCGGG
128 CAGGATCGACAGCAACCAGAGGG-GGACCGAG
* * * * ** * * * * * *
12587884 TCGGTCCCCGGCTTGTGCATTCTACCTC-TCTGACCGGCTCAGTGCCCGTAAGCTCATTTCGTGG
1 TCGATCCTCGGCTTGCGCATTCTGCCTCTTC-GGTCGGCTGAGCGCCCGCACGCTCGTTTCATGG
*
12587948 GTTGGCTTAGGCATACGGAGTTCATTC
65 GTTGACTTAGGCATACGGAGTTCATTC
12587975 ATGTCTAAGC
Statistics
Matches: 336, Mismatches: 59, Indels: 28
0.79 0.14 0.07
Matches are distributed among these distances:
157 4 0.01
158 120 0.36
159 207 0.62
160 5 0.01
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
TCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
TTGACTTAGGCATACGGAGTTCATTCCAGGCTAAGACCAGACCGAACTGAGGGTTGTAGCAGCAG
GATCGACAGCAACCAGAGGGGGACCGAG
Found at i:12588659 original size:159 final size:158
Alignment explanation
Indices: 12588294--12588779 Score: 360
Period size: 158 Copynumber: 3.1 Consensus size: 158
12588284 CAGCTAAGTG
* * **
12588294 CCCAGTCTAAGATCGAACCGGATCGAGGGTTACGGCAGCAGGATCGACAGCATGCAGAGGGGACA
1 CCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACACAGAGGGGACA
* * * * * * * * **
12588359 GGACCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACACCTGTTTTGT
66 GGACCGATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTCAACGCCCGCAAACCTATTTCAT
* *
12588424 GGGTTGGCTTAGGCATAGGGAGTTCATT
131 GGGTTGACTTAGGCATACGGAGTTCATT
*** * ** * ** * *
12588452 -CCATGTCTAATCCCCAGGCAGACTGAGGGTTGTGGCAAC-GGGTCCGACAGCACACAGAGGGGG
1 CCCA-GTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAGGAT-CGACAGCACACAGA-GGGG
* * *
12588515 ACCAGG-CCGATCCCCGACTTACGTATTATTCCTCTCCGACCGGCTCAACG-CC-CAAATGCTCA
63 A-CAGGACCGATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTCAACGCCCGCAAA-CCT-A
12588577 TTTCATGGGTTGACTTAGGCATACGGAGTTCATT
125 TTTCATGGGTTGACTTAGGCATACGGAGTTCATT
* * * ** *
12588611 CCCAGTCTAAGATCGGATCAGACCGAGGGTTACAGCAGCAGGATCGACAGCACGTAAAGGGGATC
1 CCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACACAGAGGGGA-C
* * * * * ** * * * ** *
12588676 -GGATCGGTCCCCGGCTTGCGCATTCTGCCTCTCC-AGCCGATTGAGCCCCCGC-ATGCTCGTTT
65 AGGACCGATCCCCGACTTACGCATTATGCCTCTCCGA-CCGGCTCAACGCCCGCAAACCT-ATTT
* *
12588738 CGTGGGTTGGCTTAGGCATACGGAGTTCATT
128 CATGGGTTGACTTAGGCATACGGAGTTCATT
12588769 -CCATGTCTAAG
1 CCCA-GTCTAAG
12588780 CGTACGAAGT
Statistics
Matches: 252, Mismatches: 63, Indels: 26
0.74 0.18 0.08
Matches are distributed among these distances:
157 15 0.06
158 118 0.47
159 108 0.43
160 11 0.04
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.22
Consensus pattern (158 bp):
CCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACACAGAGGGGACA
GGACCGATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTCAACGCCCGCAAACCTATTTCAT
GGGTTGACTTAGGCATACGGAGTTCATT
Found at i:12588792 original size:26 final size:26
Alignment explanation
Indices: 12588756--12588805 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
12588746 GGCTTAGGCA
*
12588756 TACGGAGTTCATT-CCATGTCTAAGCG
1 TACGAAGTTCATTCCCAT-TCTAAGCG
12588782 TACGAAGTTCATTCCCATTCTAAG
1 TACGAAGTTCATTCCCATTCTAAG
12588806 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (26 bp):
TACGAAGTTCATTCCCATTCTAAGCG
Found at i:12590241 original size:159 final size:157
Alignment explanation
Indices: 12589992--12590384 Score: 450
Period size: 157 Copynumber: 2.5 Consensus size: 157
12589982 CAGCTGAGCG
* * * * * *
12589992 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCT
1 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACCAGAT
* * * * * *
12590057 GGACCGAGGGTTGTGGCAGTGGGATCGGCAGCATGTAGAGGGGGACCGGGCCGATCC-CTGGCTT
66 GGACCGAGGGTTGCGACAGTAGGATCGACAGCACG--CAGGGGGACCGGGCCGATCCTC-GGCTT
* *
12590121 GCGCATTATGCCTCTTCGACCGGCTCAGCA
128 GCACATTATGCCTCTCCGACCGGCTCAGCA
*
12590151 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGAT
1 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACCAGAT
* *
12590215 CGGACCGAGGGTTGCGACAGTAGGATCGATAGCACGCAGGGGGATCGGGCCGATCCTCGGCTTGC
66 -GGACCGAGGGTTGCGACAGTAGGATCGACAGCACGCAGGGGGACCGGGCCGATCCTCGGCTTGC
* ** * * *
12590280 ACATTCTGCCTCTCCGGTCGGTTGAGCG
130 ACATTATGCCTCTCCGACCGGCTCAGCA
* * * * * *
12590308 CCTGCACGCTCATTTCATGGGTTGGCTTAGGCATATGAAGTTCATT-CCATGTCTAAGCCCCAGC
1 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCACCAGA
*
12590372 CGGACCGAGGGTT
65 TGGACCGAGGGTT
12590385 ATGTCAGCAA
Statistics
Matches: 199, Mismatches: 31, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
156 3 0.02
157 106 0.53
158 8 0.04
159 82 0.41
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACCAGAT
GGACCGAGGGTTGCGACAGTAGGATCGACAGCACGCAGGGGGACCGGGCCGATCCTCGGCTTGCA
CATTATGCCTCTCCGACCGGCTCAGCA
Found at i:12590337 original size:157 final size:157
Alignment explanation
Indices: 12589949--12590384 Score: 500
Period size: 159 Copynumber: 2.8 Consensus size: 157
12589939 ATCACCCGTT
* * * * *
12589949 CGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
1 CGAT-CCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGT
* * * * * * *
12590014 TGACTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGTGG
65 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACCAGATGGACCGAGGGTTGCGACAGTAG
* * *
12590079 GATCGGCAGCATGTAGAGGGGGACCGGGC
130 GATCGACAGCACG-ACAGGGGGACCGGGC
* * ** * *
12590108 CGATCCCTGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCATTTCATGGGT
1 CGATCCC-GGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGT
*
12590173 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGATCGGACCGAGGGTTGCGACAGTA
65 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACCAGAT-GGACCGAGGGTTGCGACAGTA
* *
12590237 GGATCGATAGCACG-CAGGGGGATCGGGC
129 GGATCGACAGCACGACAGGGGGACCGGGC
* * *
12590265 CGATCCTCGGCTTGCACATTCTGCCTCTCCGGTCGGTTGAGCGCCTGCACGCTCATTTCATGGGT
1 CGATCC-CGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGT
* * * * **
12590330 TGGCTTAGGCATATGAAGTTCATT-CCATGTCTAAGCCCCAGCCGGACCGAGGGTT
65 TGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCACCAGATGGACCGAGGGTT
12590385 ATGTCAGCAA
Statistics
Matches: 232, Mismatches: 40, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
156 3 0.01
157 106 0.46
158 11 0.05
159 112 0.48
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.23
Consensus pattern (157 bp):
CGATCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACCAGATGGACCGAGGGTTGCGACAGTAGG
ATCGACAGCACGACAGGGGGACCGGGC
Found at i:12591354 original size:159 final size:159
Alignment explanation
Indices: 12590867--12591388 Score: 472
Period size: 159 Copynumber: 3.3 Consensus size: 159
12590857 TGTATGCCCA
* * **
12590867 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAAAGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTT
* * * * * * *
12590932 GTGACAGCGAGACTGGCAATGCGC-AA-AGGGGGATCAGGCCGATCCCCGGCTTGCGTATTATGA
66 GTGGCAGTGGGACTGGC-A-GCACGAAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGC
* * *
12590995 CTCTTCGGTCGGCTCAGCGCCTGCACGCTCG
129 CTCTCCGGCCGGCTCAGCGCCTGCATGCTCG
* * * * **
12591026 TTTCGTGGGTTGACTTATGCATACGGAATTCATTCCCA-ATCTAAG-ATCAGATCAGACCGAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-TCAGACCGAGGG
* * * * *** *
12591089 TTGTGGCAGTCGGA-TCGACAGCATGAAG-GGGGGATCGGATCC-ATCCCTAACTTGCGCATTGT
64 TTGTGGCAGTGGGACT-GGCAGCACGAAGAGGGGGATCGG-GCCGATCCCCGGCTTGCGCATTAT
* *
12591151 ACCTCTCCGGCCGGCTGAGCGCC--CATACGCTCG
127 GCCTCTCCGGCCGGCTCAGCGCCTGCAT--GCTCG
* * ** *
12591184 TTTCGTAGGTTGGCCTAGGCATATAGAGTTTATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTT
* * * * *
12591249 GTGGTAGTGGGACTGGTAGCACGTAGAGGGGGA-CTGGGCCGATCCCCGGCTTACACATTATGCC
66 GTGGCAGTGGGACTGGCAGCACGAAGAGGGGGATC-GGGCCGATCCCCGGCTTGCGCATTATGCC
* *
12591313 TCTCCGACCGGCTCAGTGCCTGCATGCTCG
130 TCTCCGGCCGGCTCAGCGCCTGCATGCTCG
* * *
12591343 TTTCGTGGGTTGACTTTGGCATACGGAGTTCATCCTCA-GTCTAAGC
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGC
12591389 ATATGGAGTT
Statistics
Matches: 280, Mismatches: 66, Indels: 34
0.74 0.17 0.09
Matches are distributed among these distances:
156 2 0.01
157 5 0.02
158 121 0.43
159 144 0.51
160 5 0.02
161 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTT
GTGGCAGTGGGACTGGCAGCACGAAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCT
CTCCGGCCGGCTCAGCGCCTGCATGCTCG
Found at i:12591390 original size:26 final size:26
Alignment explanation
Indices: 12591361--12591413 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12591351 GTTGACTTTG
12591361 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
*
12591387 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12591413 G
1 G
12591414 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12593571 original size:26 final size:26
Alignment explanation
Indices: 12593535--12593587 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12593525 GGTGGACTAG
*
12593535 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
12593561 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
12593587 G
1 G
12593588 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:12593774 original size:26 final size:26
Alignment explanation
Indices: 12593745--12593797 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12593735 GTTGACTTAG
*
12593745 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
12593771 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
12593797 G
1 G
12593798 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:12594293 original size:26 final size:26
Alignment explanation
Indices: 12594257--12594309 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12594247 GTTGGCTTAG
*
12594257 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
12594283 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
12594309 G
1 G
12594310 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:12594467 original size:184 final size:185
Alignment explanation
Indices: 12594098--12594468 Score: 457
Period size: 184 Copynumber: 2.0 Consensus size: 185
12594088 GTTGACTTTG
* * * * *
12594098 GCATACGGAGTTCATTCCTAGTCTAATATCGGATCAGACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAGGATCGACA
* * * * * * *
12594163 TCACGCAGGGTGGGACTAGGTCGGTCCCTGGCTTTCGTATTCTACCTCTCCGACCGACTGAGCGC
66 GCACGCAGGGTGGAACGAGGTCGATCCCCGGCTTCCGTATTCTACCTCTCCGACCAACTGAGCGC
*
12594228 TCGCACCCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAA
131 TCGCACCCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCTAGTCTAA
* * * *
12594283 GCATACGGAGTTCATTCCTAGTCTAAGATCGAACCGGATCGAGGGTTACGGCAGCAGGATTGGCA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAGGATCGACA
* * * *
12594348 GCACGCAGGG-GGAACCGA-GTCTATCCCCGGCTTCCGCT-TTCTGCCTCTCTGGCCAACTGAGC
66 GCACGCAGGGTGGAA-CGAGGTCGATCCCCGGCTTCCG-TATTCTACCTCTCCGACCAACTGAGC
*
12594410 GAC-CGTACGCC-CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC-ATGTCTAA
129 G-CTCGCAC-CCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCTA-GTCTAA
12594467 GC
1 GC
12594469 CCCAGTCGAA
Statistics
Matches: 159, Mismatches: 22, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
183 1 0.01
184 87 0.55
185 71 0.45
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAGGATCGACA
GCACGCAGGGTGGAACGAGGTCGATCCCCGGCTTCCGTATTCTACCTCTCCGACCAACTGAGCGC
TCGCACCCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCTAGTCTAA
Found at i:12594877 original size:109 final size:109
Alignment explanation
Indices: 12594684--12594896 Score: 284
Period size: 109 Copynumber: 2.0 Consensus size: 109
12594674 GGGGACCAGA
* * *
12594684 CCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGACTAAGCGCCCGCACGCCCGTTTCATGGG
1 CCGATCCCCGGCTTATGCATTCTGCCTCTCCGATCGACTAAGCACCCACACGCCCGTTTCATGGG
* * * *
12594749 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGCATTCTCT
66 TTAGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATTCTCT
* * * * * *
12594793 CCGATCCCCGGCTTATGCATTCTGCCTCTCTGGTCGA-TCGAGCACCCATACGCTCGTTTCGTGG
1 CCGATCCCCGGCTTATGCATTCTGCCTCTCCGATCGACT-AAGCACCCACACGCCCGTTTCATGG
*
12594857 GTTAGCTTAGGCATACGGAGTTCTTTCCACGTCTAAGCAT
65 GTTAGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCAT
12594897 ACGGAGTTCA
Statistics
Matches: 89, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
108 1 0.01
109 88 0.99
ACGTcount: A:0.15, C:0.31, G:0.23, T:0.30
Consensus pattern (109 bp):
CCGATCCCCGGCTTATGCATTCTGCCTCTCCGATCGACTAAGCACCCACACGCCCGTTTCATGGG
TTAGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATTCTCT
Found at i:12594898 original size:26 final size:26
Alignment explanation
Indices: 12594867--12594919 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12594857 GTTAGCTTAG
*
12594867 GCATACGGAGTTC-TTTCCACGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12594893 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12594919 G
1 G
12594920 AGTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12596117 original size:28 final size:27
Alignment explanation
Indices: 12596077--12596130 Score: 99
Period size: 28 Copynumber: 2.0 Consensus size: 27
12596067 ATTGGCATAG
12596077 GCATACAGAGTTCATATCCCATGTCTAC
1 GCATACAGAGTTCATATCCCA-GTCTAC
12596105 GCATACAGAGTTCATATCCCAGTCTA
1 GCATACAGAGTTCATATCCCAGTCTA
12596131 AGATTTTGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
27 5 0.19
28 21 0.81
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
GCATACAGAGTTCATATCCCAGTCTAC
Found at i:12597107 original size:159 final size:159
Alignment explanation
Indices: 12596833--12597315 Score: 496
Period size: 158 Copynumber: 3.1 Consensus size: 159
12596823 TCATTTTCAA
* * * * * * * *
12596833 TCTAAG-ATCAGACCAGATCGAGGTTTGCGGCAGCAAGAACGACAGCACCTA-AGGGGGACCAAG
1 TCTAAGCACCAGACCGGACCGAGGGTTGCTGCAACAAGACCGACAGCACC-AGAGGGGGACCGAG
* * *
12596896 CCGATCCCCAGCTTATGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCGTTTCGTGGG
65 CCGATCCCCAGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * *
12596961 TCGGCTTAGCCATAGGGAGTTCATTCCATG
130 TTGGCTTAGGCATACGGAGTTCATTCCATG
* * ****
12596991 TCTAAGCCCCAG-TCGGACCGAGGGTTG-TGGCAGTGGGACCGACAGCACACAGAGGGGGACCGA
1 TCTAAGCACCAGACCGGACCGAGGGTTGCT-GCAACAAGACCGACAGCAC-CAGAGGGGGACCGA
* * * * *
12597054 GCCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGGTTCAGTGCCCGCACGCTCGTTTCGTGG
64 GCCGATCCCCAGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* *
12597119 GTTGACTTTGGCATACGGAGTTCATT-CATAG
129 GTTGGCTTAGGCATACGGAGTTCATTCCAT-G
* * * * * *
12597150 TCTAAG-ATCGGACCGGACCGAGGGTTGCTGCAACAAGATCAACAGGA-C-GTAGGAGGGACCGG
1 TCTAAGCACCAGACCGGACCGAGGGTTGCTGCAACAAGACCGACAGCACCAG-AGG-GGGACCGA
* * * *
12597212 GTCGATCCCTAGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
64 GCCGATCCCCAGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* **
12597277 GTTGGTTTAGGCATACAAAGTTCATTCCATG
129 GTTGGCTTAGGCATACGGAGTTCATTCCATG
12597308 TCTAAGCA
1 TCTAAGCA
12597316 TATGGAGTTC
Statistics
Matches: 263, Mismatches: 51, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
156 1 0.00
157 4 0.02
158 129 0.49
159 128 0.49
160 1 0.00
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.21
Consensus pattern (159 bp):
TCTAAGCACCAGACCGGACCGAGGGTTGCTGCAACAAGACCGACAGCACCAGAGGGGGACCGAGC
CGATCCCCAGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGGCTTAGGCATACGGAGTTCATTCCATG
Found at i:12597267 original size:158 final size:158
Alignment explanation
Indices: 12596887--12597314 Score: 459
Period size: 159 Copynumber: 2.7 Consensus size: 158
12596877 GCACCTAAGG
* * * *
12596887 GGGACCAAGCCGATCCCCAGCTTATGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCCCG
1 GGGACCGAGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCG
* * * * *
12596952 TTTCGTGGGTCGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTT
66 TTTCGTGGGT-TGCTTTGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
**** * *
12597017 GTGGCAGTGGGACCGACAGCACACAGAGG
130 GTGGCAACAAGACCAACAGCACACAGAGA
* * * * *
12597046 GGGACCGAGCCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGGTTCAGTGCCCGCACGCTCG
1 GGGACCGAGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCG
** *
12597111 TTTCGTGGGTTGACTTTGGCATACGGAGTTCATT-CATAGTCTAAG-ATCGGACCGGACCGAGGG
66 TTTCGTGGGTTG-CTTTGGCATACGGAGTTCATTCCAT-GTCTAAGCCCCAG-CCGGACCGAGGG
* * **
12597174 TTGCT-GCAACAAGATCAACAGGACGTAG-GA
128 TTG-TGGCAACAAGACCAACAGCACACAGAGA
* * * * *
12597204 GGGACCGGGTCGATCCCTAGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCG
1 GGGACCGAGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCG
* **
12597269 TTTCGTGGGTTGGTTTAGGCATACAAAGTTCATTCCATGTCTAAGC
66 TTTCGTGGGTTGCTTT-GGCATACGGAGTTCATTCCATGTCTAAGC
12597315 ATATGGAGTT
Statistics
Matches: 222, Mismatches: 40, Indels: 14
0.80 0.14 0.05
Matches are distributed among these distances:
157 3 0.01
158 96 0.43
159 122 0.55
160 1 0.00
ACGTcount: A:0.18, C:0.30, G:0.29, T:0.22
Consensus pattern (158 bp):
GGGACCGAGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCG
TTTCGTGGGTTGCTTTGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTG
TGGCAACAAGACCAACAGCACACAGAGA
Found at i:12597983 original size:158 final size:157
Alignment explanation
Indices: 12597719--12598215 Score: 547
Period size: 158 Copynumber: 3.1 Consensus size: 157
12597709 ATCGGATTGG
* * * * *
12597719 ACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGA-CCGAGCCGATCCCTGGCTTGCG
1 ACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGGGATCAG-GCCGATCCCCGGCTTGCG
* * *
12597783 CATTCTGCCTCTCCAA-CTGGCTGAGCGCCCGCATGC-CTGTTTCGTGGGTTGGCTTAGGCATAG
65 CATTCTGCCTCTTCAATC-GGCTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATAC
12597846 GGAGTTCATTCCATGTCTAAGCCCCAGTCGA
128 GGAGTTCATTCCATGTCTAAGCCCCAG-CGA
* * * *
12597877 ATCGAGGGTTGTGGCAGCGGGACCAACAGCACGCAGAGGGGGATCAGGCCGATCCCCGGCTTACG
1 ACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAG-GGGGGATCAGGCCGATCCCCGGCTTGCG
* * * * * *
12597942 CATTATGCCTCTTCGATCGGCTCAGCTCCCG-ACGCTCGTTTCGTGGGTTGACTTATGCATACGG
65 CATTCTGCCTCTTCAATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* **
12598006 AGTGCATTCC-TAGTCTAAG-ATCAGACCGA
130 AGTTCATTCCAT-GTCTAAGCCCCAG--CGA
* ** * * * * * *
12598035 ACCAAGGGTTGTGGCAGCAAAATCGATAGCACGTAGGGGGGATCGGGCCAATCCCCGGCTTGCAC
1 ACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGGGATCAGGCCGATCCCCGGCTTGCGC
* * * *
12598100 ATTCTACCTTTTCAATCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGGCATAGGCATACGGA
66 ATTCTGCCTCTTCAATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
*
12598165 GTTCATTCCATGTCTAAGCCCCAGCCA
131 GTTCATTCCATGTCTAAGCCCCAGCGA
*
12598192 GACCGAGGGTTGTGGTAGCAGGAC
1 -ACCGAGGGTTGTGGCAGCAGGAC
12598216 TGGCAGTGGG
Statistics
Matches: 275, Mismatches: 54, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
157 54 0.20
158 167 0.61
159 51 0.19
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
ACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGGGATCAGGCCGATCCCCGGCTTGCGC
ATTCTGCCTCTTCAATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCCCCAGCGA
Found at i:12598736 original size:159 final size:158
Alignment explanation
Indices: 12598352--12598747 Score: 360
Period size: 159 Copynumber: 2.5 Consensus size: 158
12598342 CCTAGTCTAA
* * * * *
12598352 GCATACGAAGTTCATTTCCAGTCTAAGATTGGATCGGACCGAGGGATGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCA-TTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAAGATCGACA
* * *
12598417 GCACGCA-AGGGGGATCGAGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGACCGATAGAGCGC
65 GCACGCAGAGGGGGATCGAGCCGATCCTCGGCTTATGCATTATGCCTCTCAGACCGATAGAGCGC
* * *
12598481 TCGCACGCCCTTTTCATGGATTGGCTTAT
130 TCGAACGCCCATTTCATGGATTGGCTTAG
* *** ** * * * ** *
12598510 GCATAGGGAGTTCATTCCAGGTCTAACCCCCAACCGGATCGAGGGTTGTGGCAGTGAGA-CCAGC
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAAGATCGA-C
* *
12598574 AGCACGCAGAGGGGGATC-AGGCTGATCC-CTGGCTTATGCATTATGCCTCTCTAG-CCAGCTCA
64 AGCACGCAGAGGGGGATCGA-GCCGATCCTC-GGCTTATGCATTATGCCTCTC-AGACC-GAT-A
* * * *
12598636 GTGC-C-CGAATGCTCATTTCATGGGTTGAG-TTAG
124 GAGCGCTCGAACGCCCATTTCATGGATTG-GCTTAG
* *
12598669 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCAGTAGCAAGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAAGATCGACA
12598734 GCACGCAG-GGGGGA
65 GCACGCAGAGGGGGA
12598748 CCGGTCCGGT
Statistics
Matches: 184, Mismatches: 43, Indels: 22
0.74 0.17 0.09
Matches are distributed among these distances:
157 7 0.04
158 54 0.29
159 109 0.59
160 10 0.05
161 4 0.02
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAAGATCGACAG
CACGCAGAGGGGGATCGAGCCGATCCTCGGCTTATGCATTATGCCTCTCAGACCGATAGAGCGCT
CGAACGCCCATTTCATGGATTGGCTTAG
Found at i:12599124 original size:26 final size:26
Alignment explanation
Indices: 12599077--12599129 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12599067 GTTGACTTAG
*
12599077 GCATACGGAGTTAATCCCCAGTCTAA
1 GCATACGGAGTTAATCCACAGTCTAA
* **
12599103 GCATACGGAGTTCATTTACAGTCTAA
1 GCATACGGAGTTAATCCACAGTCTAA
12599129 G
1 G
12599130 ATTAGATCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATCCACAGTCTAA
Found at i:12599595 original size:751 final size:750
Alignment explanation
Indices: 12598155--12599633 Score: 2162
Period size: 751 Copynumber: 2.0 Consensus size: 750
12598145 GGTTGGCATA
12598155 GGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACTGGC
1 GGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACTGGC
* * *
12598220 AGTGGGTTTGACAGCACGCAAAGGGGGACGGGGCTGATCCCTGGCTTACGCATTATGCTCTCCGG
66 AGCGGGTTCGACAGCACGCAAAGGGGGACAGGGCTGATCCCTGGCTTACGCATTATGCTCTCCGG
*
12598285 CCGGCTGACCGCCCGCACGCTCATTTCATAGGTTGACTTAAGCATACGGAGTTAATCCCTAGTCT
131 CCGGCTGACCGCCCGCACGCTCATTTCATAGGTTGACTTAAGCATACGGAGTTAATCCCCAGTCT
* * * * *
12598350 AAGCATACGAAGTTCATTTCCAGTCTAAGATTGGATCGGACCGAGGGATGCGGTAGCAGGATCGA
196 AAGCATACGAAGTTCATTTACAGTCTAAGATTAGATCGAACCAAGGGATGCGATAGCAGGATCGA
* * * * * * * *
12598415 CAGCACGCAAGGGGGATCGAGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGACCGATAGAGCG
261 CAGCACGCAAGGGGGACCGAGCCAATCCCCGACTTGCGCATTCTACCACTCCGACCGACAGAGCG
*
12598480 CTCGCACGCCCTTTTCATGGATTGGCTTATGCATAGGGAGTTCATTCCAGGTCTAACCCCCAACC
326 CTCGCACGCCCGTTTCATGGATTGGCTTATGCATAGGGAGTTCATTCCAGGTCTAACCCCCAACC
* *
12598545 GGATCGAGGGTTGTGGCAGTGAGACCAGCAGCACGCAGAGGGGGATCAGGCTGATCCCTGGCTTA
391 GGACCGAGGGTTGTGGCAGAGAGACCAGCAGCACGCAGAGGGGGATCAGGCTGATCCCTGGCTTA
* * * * *
12598610 TGCATTATGCCTCTCTAGCCAGCTCAGTGCCCGAATGCTCATTTCATGGGTTGAGTTAGGCATAC
456 CGCATTATGCCTCTCCAGCCAGCTCAGTGCCCGAACGCTCATTTCATGGGTTAAATTAGGCATAC
* * * *
12598675 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCAGTAGCAAGATCGACAGCACGC
521 AGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACAGTAGCAAGATCAACAGCACGC
* * * * * * *
12598740 AGGGGGGACCGGTCCGGTCCCCAGCTTGTGCATTCTACCTCTTCTACTGGCTAAGCGTCCGCACG
586 AGGAGGGACAGGTCCGGTCCCCAACTTGCGCATTCTACCTCTCCGACTGGCTAAGCGCCCGCACG
* * **
12598805 CTTGTTTTATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTC
651 CTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTC
12598870 CCAGTCTAAGATCAGACCGGATTGAGGGTTGCTTT
716 CCAGTCTAAGATCAGACCGGATTGAGGGTTGCTTT
* * *
12598905 GGCATACGGAGTTTATTCCATGTCTAAGCCCCAGCC-GAACCGAGGGTTGTGGTAGTAGGATTGG
1 GGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAG-ACCGAGGGTTGTGGTAGCAGGACTGG
* * * *
12598969 CAGCGGGTTCGACAGCATGCAAAGGGGGACAGGGCTGATCCCTGGCTTGCGCATTATGCCTTTTC
65 CAGCGGGTTCGACAGCACGCAAAGGGGGACAGGGCTGATCCCTGGCTTACGCATTATG-CTCTCC
* *
12599034 GGCCGGCTGACCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTAATCCCCAGT
129 GGCCGGCTGACCGCCCGCACGCTCATTTCATAGGTTGACTTAAGCATACGGAGTTAATCCCCAGT
*
12599099 CTAAGCATACGGAGTTCATTTACAGTCTAAGATTAGATCGAACCAAGGGATGCGATAGCAGGATC
194 CTAAGCATACGAAGTTCATTTACAGTCTAAGATTAGATCGAACCAAGGGATGCGATAGCAGGATC
* *
12599164 GACAGCACGCAGGGGGGACCGAGCTAATCCCCGACTTGCGCATTCTACCACTCCGACCGACAGAG
259 GACAGCACGCAAGGGGGACCGAGCCAATCCCCGACTTGCGCATTCTACCACTCCGACCGACAGAG
* * * * * *
12599229 CGCTCGTATGCCCGTTTCGTGGGTTGGCTTATGCATAGGGAGTTCATTCCATGTCTAAGCCCCAA
324 CGCTCGCACGCCCGTTTCATGGATTGGCTTATGCATAGGGAGTTCATTCCAGGTCTAACCCCCAA
* *
12599294 CCGGACCGAGGGTTGTGGCAGCAG-GACCAGCAGCACGTAGAGGGGGA-CGGGGCTGATCCCTGG
389 CCGGACCGAGGGTTGTGGCAG-AGAGACCAGCAGCACGCAGAGGGGGATC-AGGCTGATCCCTGG
* * * *
12599357 CTTGCGCATTATGCCTCTCCAGTCGGTTCAGTGCCCGAACGCTCATTTCATGGGTTAAATTAGGC
452 CTTACGCATTATGCCTCTCCAGCCAGCTCAGTGCCCGAACGCTCATTTCATGGGTTAAATTAGGC
* * * * *
12599422 ATACAGAGTTCATTCTCAGTCTAAGATCAGACCGGACGAAGGGTTAC-GATGGTAGGATCAACAG
517 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACAG-TAGCAAGATCAACAG
* *
12599486 CACGTAGGAGGGATCAGGT-CGGTCCCCAACTTGCGCATTCTAGCTCTCCGA-TCGGCTGAA-CG
581 CACGCAGGAGGGA-CAGGTCCGGTCCCCAACTTGCGCATTCTACCTCTCCGACT-GGCT-AAGCG
* * *
12599548 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCGTACAGAGTTCATTCCATGTCTAAGCATACGGA
643 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGA
*
12599613 GTTCATTCCTAGTCTAAGATC
708 GTTCATTCCCAGTCTAAGATC
12599634 GGATCAGACC
Statistics
Matches: 646, Mismatches: 75, Indels: 15
0.88 0.10 0.02
Matches are distributed among these distances:
749 1 0.00
750 115 0.18
751 523 0.81
752 7 0.01
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (750 bp):
GGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACTGGC
AGCGGGTTCGACAGCACGCAAAGGGGGACAGGGCTGATCCCTGGCTTACGCATTATGCTCTCCGG
CCGGCTGACCGCCCGCACGCTCATTTCATAGGTTGACTTAAGCATACGGAGTTAATCCCCAGTCT
AAGCATACGAAGTTCATTTACAGTCTAAGATTAGATCGAACCAAGGGATGCGATAGCAGGATCGA
CAGCACGCAAGGGGGACCGAGCCAATCCCCGACTTGCGCATTCTACCACTCCGACCGACAGAGCG
CTCGCACGCCCGTTTCATGGATTGGCTTATGCATAGGGAGTTCATTCCAGGTCTAACCCCCAACC
GGACCGAGGGTTGTGGCAGAGAGACCAGCAGCACGCAGAGGGGGATCAGGCTGATCCCTGGCTTA
CGCATTATGCCTCTCCAGCCAGCTCAGTGCCCGAACGCTCATTTCATGGGTTAAATTAGGCATAC
AGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACAGTAGCAAGATCAACAGCACGC
AGGAGGGACAGGTCCGGTCCCCAACTTGCGCATTCTACCTCTCCGACTGGCTAAGCGCCCGCACG
CTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTC
CCAGTCTAAGATCAGACCGGATTGAGGGTTGCTTT
Found at i:12600169 original size:26 final size:27
Alignment explanation
Indices: 12600129--12600181 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
12600119 GTTGGCTTAG
12600129 GCATACGAAAGTTCATT-CCATGTCTAA
1 GCATACGAAAGTTCATTCCCA-GTCTAA
*
12600156 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGAAAGTTCATTCCCAGTCTAA
12600182 CAGTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 15 0.62
27 9 0.38
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (27 bp):
GCATACGAAAGTTCATTCCCAGTCTAA
Found at i:12601804 original size:26 final size:26
Alignment explanation
Indices: 12601756--12601808 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12601746 GTTGACTTAG
* *
12601756 GCATATGGAGTTCATCCATAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
12601782 GCATACGGAGTTCATTCC-CAGTCTAA
1 GCATACGGAGTTCA-TCCACAGTCTAA
12601808 G
1 G
12601809 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:12602427 original size:184 final size:184
Alignment explanation
Indices: 12602104--12602464 Score: 463
Period size: 184 Copynumber: 2.0 Consensus size: 184
12602094 TAGGCATACG
* * * ** * *
12602104 GAGTTCATTCCTAGTCTAAGATCGAATTGAACCAAGGGTTGTGGCAGCAGGATCGATAGCACACA
1 GAGTTCATTCCCAGTCTAAGATCAAATCGAACCAAGGGTTACGGCAGCAGGATCGACAGAACACA
* * ** * ** *
12602169 GGGGGGATCGTGTTGATCCTTGGCTTACGCATTCTGCCTCTTCGGCCAGCTGAGCGCCCGCACGC
66 GGGGGGATCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTTCGACCAGCTGAGCGCCAACACAC
** * *
12602234 TTGTTTCGTGTGTTGGCTTAGGCATATGAAGTTCATTCCATGTCTAACCATATA
131 TCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAACCATATA
* * *
12602288 GAGTTCATTCCCAGTCTATGATCAAATCGGATCAAGGGTTACGGCAGCAGGATCGACAGAACACA
1 GAGTTCATTCCCAGTCTAAGATCAAATCGAACCAAGGGTTACGGCAGCAGGATCGACAGAACACA
* * * *
12602353 GGGGGGATCGGGCTGATCCCCGGCTTGA-GCATTCTGCCTCTTCGATCGGCTGATCGCCAATACA
66 GGGGGGATCGGGCTGATCCCCGGCTT-ACGCATTCTGCCTCTTCGACCAGCTGAGCGCCAACACA
*
12602417 CTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 CTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
12602465 GCCTCAGCCG
Statistics
Matches: 149, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
184 148 0.99
185 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (184 bp):
GAGTTCATTCCCAGTCTAAGATCAAATCGAACCAAGGGTTACGGCAGCAGGATCGACAGAACACA
GGGGGGATCGGGCTGATCCCCGGCTTACGCATTCTGCCTCTTCGACCAGCTGAGCGCCAACACAC
TCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAACCATATA
Found at i:12602984 original size:26 final size:27
Alignment explanation
Indices: 12602944--12602997 Score: 85
Period size: 26 Copynumber: 2.0 Consensus size: 27
12602934 GTTGGCTTAG
12602944 GCATATCGGAGTTCATT-CCATGTCTAA
1 GCATATCGGAGTTCATTCCCAT-TCTAA
12602971 GCATA-CGGAGTTCATTCCCATTCTAA
1 GCATATCGGAGTTCATTCCCATTCTAA
12602997 G
1 G
12602998 GTTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (27 bp):
GCATATCGGAGTTCATTCCCATTCTAA
Found at i:12604073 original size:159 final size:159
Alignment explanation
Indices: 12603688--12604189 Score: 466
Period size: 158 Copynumber: 3.2 Consensus size: 159
12603678 CCCAGTCTAA
* * * * * * *
12603688 GCATACGGAGTTCATTCCCA-GTCCAAGATTAGACTGGACCAAGGGCTGCAGCATCAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGAT
** * * *
12603752 AGCACGCAGA-GGGGACCGAGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCG
65 AGCACAAAGAGGGGGACCAAGCCGATCCTCGGCTTACGAATTCTGCCTCTCCGGTCGGCTGAGCG
* * *
12603816 CCCCCACGC-CTGTTTCATGAGTTGGCTTAG
130 CCCACACGCTC-GTTTCGTGGGTTGGCTTAG
* ** * * **
12603846 GCATA-GCGAGTTCATTCCATGTCTGAGCCCCAG-CTGGACCGACGGTTGTGGCAGTGGGA-CTG
1 GCATACG-GAGTTCATTCCATGTCTAAG-ATCAGACTGGACCGAGGGTTGCGGCAGCAGGATC-G
* ** * * * *
12603908 ACAGCACTTAGAGGGGGACCAAGCCGATCC-CTGGCTTACGTATTATGCCTCTCCGG-CTGGTTC
63 ATAGCACAAAGAGGGGGACCAAGCCGATCCTC-GGCTTACGAATTCTGCCTCTCCGGTC-GGCTG
* * *
12603971 AGTGCCCACTCGCTCGTTTCGTGGGTTGACTTAG
126 AGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAG
** *
12604005 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACTGGATTGAGGGTTGCGGTAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGAT
* * * * * *
12604069 AGCACAAAG-GGGGGACCAGGCCGATCCTCGGTTTGCGAATTCTACCTCTCCGATCGACTGAGCG
65 AGCACAAAGAGGGGGACCAAGCCGATCCTCGGCTTACGAATTCTGCCTCTCCGGTCGGCTGAGCG
*
12604133 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCCACACGCTCGTTTCGTGGGTTGGCTTAG
* *
12604163 GGATACGAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
12604190 CATGAGGAGT
Statistics
Matches: 271, Mismatches: 58, Indels: 30
0.75 0.16 0.08
Matches are distributed among these distances:
157 8 0.03
158 139 0.51
159 118 0.44
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGATA
GCACAAAGAGGGGGACCAAGCCGATCCTCGGCTTACGAATTCTGCCTCTCCGGTCGGCTGAGCGC
CCACACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12610785 original size:26 final size:26
Alignment explanation
Indices: 12610756--12610808 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12610746 GTTAACTTAG
12610756 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
12610782 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12610808 G
1 G
12610809 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12612202 original size:26 final size:26
Alignment explanation
Indices: 12612166--12612218 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12612156 GTTGACTTAG
*
12612166 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
12612192 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
12612218 G
1 G
12612219 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:12612480 original size:159 final size:158
Alignment explanation
Indices: 12612246--12612694 Score: 452
Period size: 159 Copynumber: 2.8 Consensus size: 158
12612236 GTTGTGGCAG
* * * * * *
12612246 CAGGATCGACATCACGCAGGGGGGA-CGAGGCCGTTCCCCGGCTTGCGCATTCTGCCTCTCCGAC
1 CAGGACCGACAGCACGCAGGAGGGATCG-GACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAT
* * *
12612310 CGGCTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
65 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* *
12612375 AGCCCCAACCGGAATAAAGGTTGTGGTAA
130 AGCCCCAACCAGAATAAAGGTTGCGGTAA
* * * * * * *
12612404 CGGGACCGGCAGCACGCAGAGGGGGATCGGACTGATCCCCGGCTTGCGCATTATCCCTCTCCAAT
1 CAGGACCGACAGCACGCAG-GAGGGATCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAT
* ** * * * * *
12612469 CGGCTCAGCGCCTACTCGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCA
65 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCT
**** * * * *
12612533 AAGATTGAACCAGACTGAGGGTTGCGGTAG
129 AAGCCCCAACCAGAATAAAGGTTGCGGTAA
* * * * * * * *
12612563 TAGGATCGATAGCACGTAGGAGGGATCGGGCCGATCCCCGGCTTGCACATCCTGCCTCTCCGGTC
1 CAGGACCGACAGCACGCAGGAGGGATCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATC
** *
12612628 GGCTGAGCGTACGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
66 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
12612693 GC
131 GC
12612695 ATAAGGACTT
Statistics
Matches: 228, Mismatches: 59, Indels: 8
0.77 0.20 0.03
Matches are distributed among these distances:
157 3 0.01
158 103 0.45
159 117 0.51
160 5 0.02
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
CAGGACCGACAGCACGCAGGAGGGATCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATC
GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCCCCAACCAGAATAAAGGTTGCGGTAA
Found at i:12612658 original size:158 final size:158
Alignment explanation
Indices: 12612192--12612693 Score: 503
Period size: 158 Copynumber: 3.2 Consensus size: 158
12612182 CCCAATCTAA
* * * *
12612192 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGAAC-GAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGG-ACTGAGGGTTGTGGTAGCAGGATCGAC
* * *
12612256 ATCACGCAGGGGGGA-CGAGGCCGTTCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
65 AGCACGCAGGGGGGATCG-GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
** * *
12612320 CCCGCACACCCGTTTCGTGGGTTGGCTTAG
129 TACGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * * * * *
12612350 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACCGGAATAAAGGTTGTGGTAACGGGACCGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCGGACTGAGGGTTGTGGTAGCAGGATCGAC
* * * * * *
12612414 AGCACGCAGAGGGGGATCGGACTGATCCCCGGCTTGCGCATTATCCCTCTCCAATCGGCTCAGCG
65 AGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
* * * *
12612479 CCTA--CTCGCTCGTTCCATGGGTTGACTTAG
129 --TACGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
12612509 GCATACGGAGTTCATTCCCAGTCAAAGATTGAACCAGACTGAGGGTTGCGGTAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGTGGTAGCAGGATCGACA
* * * * *
12612574 GCACGTAGGAGGGATCGGGCCGATCCCCGGCTTGCACATCCTGCCTCTCCGGTCGGCTGAGCGTA
66 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGTA
*
12612639 CGCACGCTTGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
12612667 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
12612694 CATAAGGACT
Statistics
Matches: 268, Mismatches: 66, Indels: 20
0.76 0.19 0.06
Matches are distributed among these distances:
156 2 0.01
157 7 0.03
158 139 0.52
159 115 0.43
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGTGGTAGCAGGATCGACA
GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGTA
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12612719 original size:26 final size:26
Alignment explanation
Indices: 12612667--12612719 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
12612657 GTTGGCTTAG
* * *
12612667 GCATACGGAGTTCATTCCATGTCTAA
1 GCATAAGGACTTCATTCCATGTATAA
12612693 GCATAAGGACTTCATTCCCA-GTATAA
1 GCATAAGGACTTCATT-CCATGTATAA
12612719 G
1 G
12612720 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATAAGGACTTCATTCCATGTATAA
Found at i:12613372 original size:159 final size:158
Alignment explanation
Indices: 12613072--12613574 Score: 570
Period size: 159 Copynumber: 3.2 Consensus size: 158
12613062 CCCAGTCTAA
* * * * * *
12613072 GCATACGGAGTTCATTCCCA-GTCTATGATCAGACTGGACCGAGGGTTGTGACAGCAGGATCAAT
1 GCATAGGGAGTTCATT-CCATGTCTAAGAACAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAT
* * * *
12613136 AGCACGCAGGAGGGACCGGG-TCGATCCCCGGCTTACGCATTATGCCTCTTCGGTCTGCTGAGCG
65 AGCACGCAGGAGGGACCGGGCT-GATCCCCGACTTGCGCATTATGCCTCTTCGGCCAGCTGAGCG
12613200 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
12613230 GCATAGGGAGTTCATTCCATGTCTAA-AACCCAG-CCGGACCGAGGGTTGTGGCAGCGGGATCGA
1 GCATAGGGAGTTCATTCCATGTCTAAGAA--CAGACCGGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * * *
12613293 CAGCACGTAGAAAGGGACCGGGCTAATCCCCGACTTGCGCGTTATGCCTCTTCGGCCAGCTCAGC
64 TAGCACGCAG-GAGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTTCGGCCAGCTGAGC
* * *
12613358 GCCAGCACGCTCGTTTCATGGGTTGACTTAT
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
** * **
12613389 GCATATAGAGTTCATTCTCA-GTCTAAGAACAGATCGGACCGAGGGTTGCAGCAGCAGGATCGAT
1 GCATAGGGAGTTCATTC-CATGTCTAAGAACAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAT
* * * * *
12613453 AGCACGCAGGGGGGGACCGGGCCGATCCCC-AGCTTGCGCATTTTGCCTCGTCGACCAGCTGAGC
65 AGCACGCA-GGAGGGACCGGGCTGATCCCCGA-CTTGCGCATTATGCCTCTTCGGCCAGCTGAGC
**
12613517 GCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
12613548 GCAT-GCGGAATTCATTTCATGTCTAAG
1 GCATAG-GGAGTTCATTCCATGTCTAAG
12613575 CATACGGTGT
Statistics
Matches: 287, Mismatches: 46, Indels: 23
0.81 0.13 0.06
Matches are distributed among these distances:
157 4 0.01
158 60 0.21
159 217 0.76
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATAGGGAGTTCATTCCATGTCTAAGAACAGACCGGACCGAGGGTTGTGGCAGCAGGATCGATA
GCACGCAGGAGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTTCGGCCAGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:12614307 original size:26 final size:26
Alignment explanation
Indices: 12614271--12614322 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
12614261 GTTGACTTAG
12614271 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
12614297 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12614323 TATCAGACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12614799 original size:26 final size:26
Alignment explanation
Indices: 12614770--12614822 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12614760 GTTGGCCTAG
*
12614770 GCATACGGAGTTTATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
12614796 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
12614822 G
1 G
12614823 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Done.