Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 86 of 402
Found at i:12615150 original size:512 final size:511
Alignment explanation
Indices: 12614347--12615337 Score: 1213
Period size: 512 Copynumber: 1.9 Consensus size: 511
12614337 GAGGGTTGTA
* * * * * *
12614347 GTAGCAGGATCGATAGCATGTAAGGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCT
1 GTAGCAAGATCGACAGCATGCAAGGGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCC
* * * *
12614412 ACCGACTGAGATCCCGTACACCCGTTTCGTGGGTTGGCTTAGGCATAGCGAGTTGATTCCATGTC
66 ACCGACTGAGATCCCGTACACCCATTTCGTGGGATGGCTTAGGCATAGAGAGTTCATTCCATGTC
** *
12614477 TAAGCCCTGGCCAAACTGAGGGTTGGGGCAATGGAACTGGCAGCACGCAGAGGGGGTCCGGGCCA
131 TAAGCCCCAGCCAAACCGAGGGTTGGGGCAATGGAACTGGCAGCACGCAGAGGGGGTCCGGGCCA
*
12614542 ATCCCCGGCTTGTGCATTATGCCTCTCCGGCCAGCTCAGCACCCGCACGCTCATTTCATGGGTTG
196 ATCCCCGGCTTGTGCATTATGCCTCTCCGACCAGCTCAGCACCCGCACGCTCATTTCATGGGTTG
* ** *
12614607 ACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTT-GTGCAGTAGGA
261 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTAGT-CAGCAGGA
* * * ** * * * *
12614671 TTGAGAGCATGTAGGGGGGACTAG-GTTGATCCCCGGCTTGCACATTCTGCCTCTCTGCCCGGTT
325 TCGAGAGCACGCAGGGGGGA-TAGAGCCGATCCCCGGCTTACACATTCTGCCTCTCCGACCGGCT
* * * * *
12614735 GAGC-GCCGGTACGCTCGTTTCATGGGTTGGCCTAGGCATACGGAGTTTATTCCATGTCTAAGCA
389 GA-CTGCCCGCACGCTCGTTTCATGGGTTGGCCTAGGCATACGAAGTTCATTCCATGTCTAAGAA
* *
12614799 TACGGAGTTCATTCCTAGTCTAAGATCGGATCGGATTGAAGGTTGCGACAGCAGGACCC
453 TACAGAGTTCATTCCCAGTCTAAGATCGGATCGGATTGAAGGTTGCGACAGCAGGACCC
* * * * *
12614858 GTAGCAAGATCGACAGCATGCAGGGGGGACCGAGCTGATCCTCGGCTTGCGCATTCTGCCTCTCC
1 GTAGCAAGATCGACAGCATGCAAGGGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCC
* * *
12614923 AGTCGGCTGAGCA-CCCGTACGCCCATTTCGTGGGATGGCTTAGGCATAGAGAGTTCATTCCATG
66 A-CCGACTGAG-ATCCCGTACACCCATTTCGTGGGATGGCTTAGGCATAGAGAGTTCATTCCATG
* ** * * *
12614987 TCTAAGCCCCAGTCGGACCGAGGGTTGTGG-TA-GCGAGACTGGCAGCACGTAGAGGGGGAT-CG
129 TCTAAGCCCCAGCCAAACCGAGGGTTGGGGCAATG-GA-ACTGGCAGCACGCAGAGGGGG-TCCG
* * * * * * ** * * *
12615049 GGTCGATCCCTGGCTTGTGCATTATGCCTCTTCGATCGGCTCAGCGTCTGCACGCTCTTTTCGTG
191 GGCCAATCCCCGGCTTGTGCATTATGCCTCTCCGACCAGCTCAGCACCCGCACGCTCATTTCATG
* * * * *
12615114 GGTTGACTTATGCATACGTAGTTCATTTCCAGTCTAAGATCGGACCAGACTGAGGGTTACGTTAG
256 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTA-GTCAG
* * * * *
12615179 CAGGATCGATAGCACGCAGGGGGGATTGAGCCGATCCCCGGCTTACGCATTCTGCCTGTCCGATC
320 CAGGATCGAGAGCACGCAGGGGGGATAGAGCCGATCCCCGGCTTACACATTCTGCCTCTCCGACC
* *
12615244 GGCTGACTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
385 GGCTGACTGCCCGCACGCTCGTTTCATGGGTTGGCCTAGGCATACGAAGTTCATTCCATGTCTAA
12615309 GAATACAGAGTTCATTCCCAGTCTAAGAT
450 GAATACAGAGTTCATTCCCAGTCTAAGAT
12615338 TTTGAGCGAC
Statistics
Matches: 400, Mismatches: 71, Indels: 16
0.82 0.15 0.03
Matches are distributed among these distances:
510 1 0.00
511 58 0.14
512 205 0.51
513 134 0.34
514 2 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (511 bp):
GTAGCAAGATCGACAGCATGCAAGGGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCC
ACCGACTGAGATCCCGTACACCCATTTCGTGGGATGGCTTAGGCATAGAGAGTTCATTCCATGTC
TAAGCCCCAGCCAAACCGAGGGTTGGGGCAATGGAACTGGCAGCACGCAGAGGGGGTCCGGGCCA
ATCCCCGGCTTGTGCATTATGCCTCTCCGACCAGCTCAGCACCCGCACGCTCATTTCATGGGTTG
ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTAGTCAGCAGGAT
CGAGAGCACGCAGGGGGGATAGAGCCGATCCCCGGCTTACACATTCTGCCTCTCCGACCGGCTGA
CTGCCCGCACGCTCGTTTCATGGGTTGGCCTAGGCATACGAAGTTCATTCCATGTCTAAGAATAC
AGAGTTCATTCCCAGTCTAAGATCGGATCGGATTGAAGGTTGCGACAGCAGGACCC
Found at i:12615170 original size:159 final size:158
Alignment explanation
Indices: 12614858--12615310 Score: 391
Period size: 159 Copynumber: 2.9 Consensus size: 158
12614848 AGCAGGACCC
* * * * * * *
12614858 GTAGCAAGATCGACAGCATGCAGGGGGGACCGAGCTGATCCTCGGCTTGCGCATTCTGCCTCTCC
1 GTAGCAGGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCC
* * * * * * *
12614923 -AGTCGGCTGAGC-ACCCGTACGCCCATTTCGTGGGATGGCTTAGGCATA-GAGAGTTCATTCCA
66 GA-TCGGCTCA-CTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCA
* ** * * * **
12614985 TGTCTAAG-CCCCAGTCGGACCGAGGGTTGTG
128 TGTCTAAGATCGGA-CCAGACTGAGGGTTACG
* * * * * **
12615016 GTAGC-GAGA-CTGGCAGCACGTAGAGGGGGATCGGGTCGATCCCTGGCTTGTGCATTATGCCTC
1 GTAGCAG-GATC-GACAGCACGCAG-GGGGGATCGAGCCGATCCCCGGCTTACGCATTATGCCTC
* * * * * *
12615079 TTCGATCGGCTCAGC-GTCTGCACGCTCTTTTCGTGGGTTGACTTATGCATACGTAGTTCATTTC
63 TCCGATCGGCTCA-CTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCA-TTC
12615143 CA-GTCTAAGATCGGACCAGACTGAGGGTTACG
126 CATGTCTAAGATCGGACCAGACTGAGGGTTACG
* * * * *
12615175 TTAGCAGGATCGATAGCACGCAGGGGGGATTGAGCCGATCCCCGGCTTACGCATTCTGCCTGTCC
1 GTAGCAGGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCC
* *
12615240 GATCGGCTGACTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGT
66 GATCGGCTCACTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGT
12615305 CTAAGA
131 CTAAGA
12615311 ATACAGAGTT
Statistics
Matches: 232, Mismatches: 52, Indels: 22
0.76 0.17 0.07
Matches are distributed among these distances:
157 7 0.03
158 105 0.45
159 109 0.47
160 11 0.05
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
GTAGCAGGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCC
GATCGGCTCACTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGT
CTAAGATCGGACCAGACTGAGGGTTACG
Found at i:12616047 original size:26 final size:26
Alignment explanation
Indices: 12616007--12616059 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12615997 TTTGACTTAG
*
12616007 GCATATGGAGATCATCCCCAGTCTAA
1 GCATACGGAGATCATCCCCAGTCTAA
* *
12616033 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATCCCCAGTCTAA
12616059 G
1 G
12616060 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATCCCCAGTCTAA
Found at i:12616366 original size:159 final size:157
Alignment explanation
Indices: 12616033--12616534 Score: 494
Period size: 158 Copynumber: 3.2 Consensus size: 157
12616023 CCCAGTCTAA
* * *
12616033 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGA-CCGATCGGACTGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * *
12616098 GCACGTA-AGAGGCACCGAGTCAATCCCCGGCTTACGCATTCTGCCTCTTCGGCCGACTGAGCAC
65 GCACGTAGAGAGGGACCG-GGCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGC
* * * * *
12616162 CCGCACGCCCATTTCGTAGATTGGCTTAG
129 TCGCACACTCATTTCATGGATTGGCTTAG
* * * *
12616191 GTATAGGGAGTTCATT-CCATGTCTAAG-CCGCAGTCGGACTGAGGGTTGTGGCAGCAGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGACCG-A-TCGGACTGAGGGTTGCGGCAGCAGGATCGA
* * * * * *
12616254 CAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCATGCGCATTATGCCTCTCCGACTGGCTCAGC
63 CAGCACGTAGAGAGGGACCGGG-CAATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGC
* * *
12616319 GCTCACACACTCATTTCATGGGTTGACTTAG
127 GCTCGCACACTCATTTCATGGATTGGCTTAG
* * * *
12616350 GCATACGGAGTTCATTCCCAGTCTAAGATCTGATCGGACTGCA-GGTTGCGGCTGCATGATTGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGA-CCGATCGGACTG-AGGGTTGCGGCAGCAGGATCGAC
* * * * * *
12616414 AGCACGCAG-GAGGGATCGGGCTAGTCCTCGGCTTGCGTATTCTGCCTCTCCGGCTAGCTGAGCG
64 AGCACGTAGAGAGGGACCGGGC-AATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCG
* * *
12616478 CTTGCACACTCGTTTCATGGTTTGGCTTAG
128 CTCGCACACTCATTTCATGGATTGGCTTAG
*
12616508 GCATACAGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
12616535 CGTACGGAGT
Statistics
Matches: 279, Mismatches: 54, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
156 2 0.01
157 8 0.03
158 146 0.52
159 116 0.42
160 5 0.02
161 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCGATCGGACTGAGGGTTGCGGCAGCAGGATCGACAG
CACGTAGAGAGGGACCGGGCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCTC
GCACACTCATTTCATGGATTGGCTTAG
Found at i:12616899 original size:158 final size:158
Alignment explanation
Indices: 12616609--12617050 Score: 446
Period size: 158 Copynumber: 2.8 Consensus size: 158
12616599 CCAAGATCGA
* * * * **
12616609 CAGCACGCAGGGGGGATCGGGTCGATCACCGGTTTGTGCATTCTCGCTCTCCGACCGGCTGAGTG
1 CAGCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTAACTCTCCGACCGGCTGAGTG
* * * *
12616674 CCCACAGGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGAAC
66 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCGAAC
* * * *
12616738 CAGACCGAGGGTTGCGATC-GCAGGATCGG
130 CAGACCAAGGATTGCG-GCAGCAGGACCGG
* * * *
12616767 TAGTACGTAGGGGGGATCGGGTCGATCCCCGGCTTACGCATTTTAACTCTCCGACCGGCTGAGTG
1 CAGCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTAACTCTCCGACCGGCTGAGTG
* * * *
12616832 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA-A-CGCTAG
66 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCG--AA
* **
12616895 CCAGACCAAGGATTGTGGCAGTGGGACCGG
129 CCAGACCAAGGATTGCGGCAGCAGGACCGG
* * * ** * *
12616925 CAGCACGTAGAGGGGGACCGGGGCCGATCCTTCGGCTTGGCGCATTCTGCCT-TCTCGACTGACT
1 CAGCACGTAG-GGGGGATC-GGGTCGATCC-CCGGCTT-GCGCATTCTAACTCTC-CGACCGGCT
* * *
12616989 GAGCGCCCGCACGTTCATTTCGT-GGTTGGCTTAGGCATACGGAATTCATTCCATGTCTAAGA
61 GAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGA
12617051 ATAATGGAGT
Statistics
Matches: 232, Mismatches: 42, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
156 2 0.01
157 5 0.02
158 130 0.56
159 7 0.03
160 9 0.04
161 43 0.19
162 36 0.16
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
CAGCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTAACTCTCCGACCGGCTGAGTG
CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATCGAACC
AGACCAAGGATTGCGGCAGCAGGACCGG
Found at i:12617794 original size:26 final size:26
Alignment explanation
Indices: 12617744--12617796 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12617734 GTTAACTTAG
* *
12617744 GCATACGGAGTTCATCCCTATTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
12617770 GCATACGAAGTTCATTCCC-AGTCTAA
1 GCATACGAAGTTCA-TCCCTAGTCTAA
12617796 G
1 G
12617797 ATAGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:12618122 original size:26 final size:26
Alignment explanation
Indices: 12618086--12618138 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12618076 GTTGACTTAG
*
12618086 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12618112 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12618138 G
1 G
12618139 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12618362 original size:343 final size:342
Alignment explanation
Indices: 12617672--12618456 Score: 903
Period size: 343 Copynumber: 2.3 Consensus size: 342
12617662 GCACCCGTTT
* * ** * * * ** *
12617672 GATCCCCGGCTTGCGCATCCTACCTCTCTGGTCGGCTGAGCGTCCGCACGCTCATTTCGTGGGTT
1 GATCCCCGACTTACGCATTATACCTCTCCGATCGGTTGAGCACCCACACGCTCATTTCGTGGGTT
* * *
12617737 AACTTAGGCATACGGAGTTCATCCCTATTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATAGG
66 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATAGG
* ** * * * *
12617802 ACCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCATGTAGGGGGACCGGGCCGATCCCTGACTT
131 ACCGAACCAAGGGTTGCGAAAGCAGGATCGACAACATGCAGGGGGACCAGGCCGATCCCTGACTT
* * * * *
12617867 GCGCATTCTACCTCTCCGGCCGGCTTAGTGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATA
196 GCGCATTCTACCTCTCCGACAGGCTGAGTGCCCACACACCCGTTTCATGGGTTGGCTTAGGCATA
* * * * * ** *
12617932 GGGAGTTCATTCCATGTCTAAGCCCCATCTGGATCGACGGTTGTGGCAGTGGGATCGGCACCACG
261 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAACGGTTGTAGCAGCAGGACCGGCACCACG
*
12617997 TAGAGGGGGACCAGATC
326 TAGAGGGGGACCAGACC
*
12618014 GATCCCCGACTTACGCATTATGCCTCTCCGATCGGCTT-AGCACCCACACGCTCATTTCGTGGGT
1 GATCCCCGACTTACGCATTATACCTCTCCGATCGG-TTGAGCACCCACACGCTCATTTCGTGGGT
* * *
12618078 TGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCA
65 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT-A
* * * **
12618143 -GATCGGATCAAGGGTTGCGAAAGCAGGATCGACAACACT-CAGAGGGGACCAGGTTGAT-CCTC
129 GGACCGAACCAAGGGTTGCGAAAGCAGGATCGACAACA-TGCAG-GGGGACCAGGCCGATCCCT-
* * * * * * *
12618205 GGCTTGCGCATTCTGCCTCTCCTATATGCTGGGTGCCCACACGCCCGTTTCATGGGTTGGCTTAG
191 GACTTGCGCATTCTACCTCTCCGACAGGCTGAGTGCCCACACACCCGTTTCATGGGTTGGCTTAG
* **
12618270 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTAGTGGCAGGACCGGCA
256 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAACGGTTGTAGCAGCAGGACCGGCA
* * *
12618335 GCACGTAGAGGGGGACCGGGCC
321 CCACGTAGAGGGGGACCAGACC
* * * * * *
12618357 GATCCCCGACTTGCGCATTCTACCTCTTCGATCGGTTGAGCGCCCGCACGCTTATTTCGTGGGTT
1 GATCCCCGACTTACGCATTATACCTCTCCGATCGGTTGAGCACCCACACGCTCATTTCGTGGGTT
* * * *
12618422 GGCTTAGGCATACAGAGTTCTTTCCCAGTCTAAGC
66 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
12618457 TTTTGAGCCA
Statistics
Matches: 369, Mismatches: 68, Indels: 11
0.82 0.15 0.02
Matches are distributed among these distances:
342 144 0.39
343 225 0.61
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.24
Consensus pattern (342 bp):
GATCCCCGACTTACGCATTATACCTCTCCGATCGGTTGAGCACCCACACGCTCATTTCGTGGGTT
GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATAGG
ACCGAACCAAGGGTTGCGAAAGCAGGATCGACAACATGCAGGGGGACCAGGCCGATCCCTGACTT
GCGCATTCTACCTCTCCGACAGGCTGAGTGCCCACACACCCGTTTCATGGGTTGGCTTAGGCATA
GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAACGGTTGTAGCAGCAGGACCGGCACCACG
TAGAGGGGGACCAGACC
Found at i:12621541 original size:159 final size:158
Alignment explanation
Indices: 12621239--12621880 Score: 552
Period size: 159 Copynumber: 4.1 Consensus size: 158
12621229 TAAGCATATG
* * * * * * *
12621239 GAGTTCATTCCTAGTCAAAGATCAGACCGAACTGAGGATTGTGGCAGTAGGATCGGTAGCACA-C
1 GAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTTTGGCAGCAGGATCGG-AACA-AGC
** * * * * * * * * * * **
12621303 AAAGG-GGA-CCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCAGTCGGTTGAGTGCCCGC-
64 AGGGGAGGATCAG-GTCGATCCCTGGCTTGCGTATTATGCCTCTCCGGTCAGCTCAACGCCCGCA
* * **
12621365 TCGCCCGTTTCATGGGTTGGCTTAGGCATAGG
128 T-GCTCGTTTCATGGGTTGACTTAGGCATACA
** * * * * *
12621397 GAGTTCATTCC-ATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCGGGACCGGCAACACG
1 GAGTTCATTCCTA-GTCTAAG-ATCAGACCGGACCGAGGGTTTTGGCAGCAGGATCGG-AACAAG
* *
12621460 CAGAGGAGGATCAGGTCGATCCCTGGCTTGCGTATTATGCCTCTCCGGTCAGCTCAACGCCTGCA
63 CAGGGGAGGATCAGGTCGATCCCTGGCTTGCGTATTATGCCTCTCCGGTCAGCTCAACGCCCGCA
* **
12621525 CGCTCGTTTCATGGGTTGACTTAGGTGTACA
128 TGCTCGTTTCATGGGTTGACTTAGGCATACA
* * *
12621556 GAGTTCATTCCTAGTCTAAGATCAGACTGGATCGAGGGTTTTGGCAGCAGGATC-G-ACATGCAG
1 GAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTTTGGCAGCAGGATCGGAACAAGCAG
* * *
12621619 GGGGGGATC-GAGTCAATACCTGGCTTGCGTATTATGCCTCTCCGGTCAGCTCAACGCCCGCATG
66 GGGAGGATCAG-GTCGATCCCTGGCTTGCGTATTATGCCTCTCCGGTCAGCTCAACGCCCGCATG
* * *
12621683 CTCGTTTCGTAGGTTGACTTAGGTATACA
130 CTCGTTTCATGGGTTGACTTAGGCATACA
* *
12621712 GAGTTCATTCCTAGTCTAAGATTAGACCGGACCTAGGGTTTTGGCAGCAGGATC-GATAGCAAGC
1 GAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTTTGGCAGCAGGATCGGA-A-CAAGC
* * * * * * * ** *
12621776 AGGGGTGGATCAGGCCGGTCCTTGGCTTGCGCATTCTGCCTTTCCGACCGGCT-AAGCGCCCGCA
64 AGGGGAGGATCAGGTCGATCCCTGGCTTGCGTATTATGCCTCTCCGGTCAGCTCAA-CGCCCGCA
* *
12621840 TGCTCGTTTCATGAGTTGGCTTAGGCATAC-
128 TGCTCGTTTCATGGGTTGACTTAGGCATACA
12621870 GAAGTTCATTC
1 G-AGTTCATTC
12621881 GATGTCTAAG
Statistics
Matches: 395, Mismatches: 74, Indels: 29
0.79 0.15 0.06
Matches are distributed among these distances:
155 1 0.00
156 140 0.35
157 1 0.00
158 56 0.14
159 193 0.49
160 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
GAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTTTGGCAGCAGGATCGGAACAAGCAG
GGGAGGATCAGGTCGATCCCTGGCTTGCGTATTATGCCTCTCCGGTCAGCTCAACGCCCGCATGC
TCGTTTCATGGGTTGACTTAGGCATACA
Found at i:12622098 original size:195 final size:195
Alignment explanation
Indices: 12621854--12622281 Score: 538
Period size: 195 Copynumber: 2.2 Consensus size: 195
12621844 CGTTTCATGA
* * *
12621854 GTTGGCTTAGGCATACGAAGTTCATTCGATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
1 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGAT
* * * * * *
12621919 CAGA-TCGGACCGGGGGTTGCGACAGCAGGACCAGTAGCAAGATTGAGAGCACGCAGGGGGGATC
66 CAGACT-GGACCGAGGGTTGCGACAGCAGGACCAATAACAAGATCGACAGCACGCAGGGGGGACC
* * **
12621983 GGGCTAGTTGCCAG-CTTACGCATTCTGCCTCTCTGGCCGAATGAGTGCCCGTACACTCATTTCG
130 GGGC-AGATCCCAGACTTACGCATTCTGCCTCTCT-GCCGAATGAGCACCCGTACACTCATTTCG
12622047 T-G
193 TGG
** *
12622049 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAATCTAATAT
1 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGAT
* * * *
12622114 CGGACTGGACCGAGGGTTGCGGCAGCAGGACCAATAACAGGATCGACAGCACGTAGGGGGGACCG
66 CAGACTGGACCGAGGGTTGCGACAGCAGGACCAATAACAAGATCGACAGCACGCAGGGGGGACCG
* * ** * ** * *
12622179 GGCCGATCCCTGACTTGTGCATTCTGTCTCTCTGCCGGTTGAGCACCCGTACGCTCGTTTCGTGG
131 GGCAGATCCCAGACTTACGCATTCTGCCTCTCTGCCGAATGAGCACCCGTACACTCATTTCGTGG
*
12622244 GTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12622282 CCCAGTCGAA
Statistics
Matches: 200, Mismatches: 30, Indels: 6
0.85 0.13 0.03
Matches are distributed among these distances:
194 29 0.14
195 170 0.85
196 1 0.00
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (195 bp):
GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGAT
CAGACTGGACCGAGGGTTGCGACAGCAGGACCAATAACAAGATCGACAGCACGCAGGGGGGACCG
GGCAGATCCCAGACTTACGCATTCTGCCTCTCTGCCGAATGAGCACCCGTACACTCATTTCGTGG
Found at i:12622109 original size:26 final size:26
Alignment explanation
Indices: 12622059--12622110 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12622049 GTTGGCTTAG
*
12622059 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
12622085 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
12622111 TATCGGACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:12622916 original size:26 final size:26
Alignment explanation
Indices: 12622887--12622939 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12622877 GTTGGCTTAG
*
12622887 GCATACGGAGTTCAAT-CCATGTCTAA
1 GCATACAGAGTTCAATCCCA-GTCTAA
*
12622913 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
12622939 G
1 G
12622940 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:12623286 original size:158 final size:159
Alignment explanation
Indices: 12623124--12623428 Score: 409
Period size: 159 Copynumber: 1.9 Consensus size: 159
12623114 GGATCAAACT
* * * *
12623124 GAGGGTTGCGGCAGCAGGATCGGCAGCATGCAG-GGGGGACCGGG-TCGATCCTCGGCTTGCACA
1 GAGGGTTGCGGCAGCAGGACCGGCAGCACGCAGAGAGGGACCGGGCT-GATCCCCGGCTTGCACA
* * * * *
12623187 TTCTACCTCTCCGATTGGCTGAGCACTC-GCACGCCCGTTTCGTGGGTTTGCTTAGGCATAGGGA
65 TTCTACCTCTCCGACTGGATGAGC-CTCGGCACGCCCGTTTCGTGGGTTGGCTTAGGAATACGGA
*
12623251 GTTCATTCCATGTTTAAGCCCTAGCCAGACC
129 GTTCATTCCATGTCTAAGCCCTAGCCAGACC
* * * * *
12623282 GAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGAGGGATCGGGCTGATCCCCGGCTTGCGCAT
1 GAGGGTTGCGGCAGCAGGACCGGCAGCACGCAGAGAGGGACCGGGCTGATCCCCGGCTTGCACAT
* * *
12623347 TCTGCCTCTCCGACTGGATGAGCGTCGGCACGCTCGTTTCGTGGGTTGGCTTAGGAATACGGAGT
66 TCTACCTCTCCGACTGGATGAGCCTCGGCACGCCCGTTTCGTGGGTTGGCTTAGGAATACGGAGT
12623412 TCATTCCATGTCTAAGC
131 TCATTCCATGTCTAAGC
12623429 ATACGGAGTT
Statistics
Matches: 126, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
158 30 0.24
159 95 0.75
160 1 0.01
ACGTcount: A:0.17, C:0.27, G:0.33, T:0.23
Consensus pattern (159 bp):
GAGGGTTGCGGCAGCAGGACCGGCAGCACGCAGAGAGGGACCGGGCTGATCCCCGGCTTGCACAT
TCTACCTCTCCGACTGGATGAGCCTCGGCACGCCCGTTTCGTGGGTTGGCTTAGGAATACGGAGT
TCATTCCATGTCTAAGCCCTAGCCAGACC
Found at i:12623439 original size:26 final size:26
Alignment explanation
Indices: 12623403--12623453 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12623393 TGGCTTAGGA
12623403 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
12623429 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
12623454 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:12624173 original size:26 final size:26
Alignment explanation
Indices: 12624123--12624173 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
12624113 GTTGGCTTAG
* *
12624123 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAATCTAA
12624149 GCATACAGAGTTCATTCCC-AATCTA
1 GCATACAGAGTTCA-TCCCTAATCTA
12624174 GGATCAGACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAATCTAA
Found at i:12624503 original size:159 final size:156
Alignment explanation
Indices: 12624149--12624555 Score: 365
Period size: 159 Copynumber: 2.6 Consensus size: 156
12624139 CCTAGTCTAA
* * *
12624149 GCATACAGAGTTCATTCCCAATCTAGGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTA-GATCAGACCAGACCGAGGATTGCGACAGCAGGATCGACA
* * * *
12624214 GCACACAGGGGGACCAGGTCGATCCCTGGCTTACGCATTCAACCTTTCTGGCCGGCTGAGCACCC
65 GCACACAGGGGGACCAGGTCGATCCCCGACTTACGCATTCAACCTTTCTGACCGGCTCAGCACCC
** * ** *
12624279 GCACGCCCGTTTCGTGGGTTGGCTTAG
130 AAACGCCCGTTACACGGGTTGACTTAG
* * ** * *
12624306 GCATAGGGAGTTCATT-CCATGTCGAAGCCCCAG-TCAGACCGAGGATTGTGACAGCAGGATCGA
1 GCATACGGAGTTCATTCCCA-GTC-TAG-ATCAGACCAGACCGAGGATTGCGACAGCAGGATCGA
* ** * * *
12624369 CAGCAAGCAGAGGGGGACTGGGTCGATCCCCGACTTGCGCATT-ATGCCTTT-TCGATCGGCTCA
63 CAGC-A-CACAGGGGGACCAGGTCGATCCCCGACTTACGCATTCA-ACCTTTCT-GACCGGCTCA
** *
12624432 GTGCCCAAACGCTCGTTACACGGGTTGACTTAG
124 GCACCCAAACGCCCGTTACACGGGTTGACTTAG
* * * *
12624465 GCATACGGAGTTCATTCCCAGTCTTAGATCAGACCAGACTGAAGG-TTGCTACAGTAAGATCGAC
1 GCATACGGAGTTCATTCCCAGTC-TAGATCAGACCAGACCG-AGGATTGCGACAGCAGGATCGAC
* * *
12624529 ACCACATAGGGGGGATCAGGTCGATCC
64 AGCACACA-GGGGGACCAGGTCGATCC
12624556 TCGGTTTACT
Statistics
Matches: 195, Mismatches: 44, Indels: 21
0.75 0.17 0.08
Matches are distributed among these distances:
156 3 0.02
157 51 0.26
158 26 0.13
159 109 0.56
160 6 0.03
ACGTcount: A:0.24, C:0.27, G:0.29, T:0.21
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAGATCAGACCAGACCGAGGATTGCGACAGCAGGATCGACAG
CACACAGGGGGACCAGGTCGATCCCCGACTTACGCATTCAACCTTTCTGACCGGCTCAGCACCCA
AACGCCCGTTACACGGGTTGACTTAG
Found at i:12624855 original size:26 final size:26
Alignment explanation
Indices: 12624819--12624871 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12624809 GTTGGCTTAG
*
12624819 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
12624845 GCATACAGAGTTGATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
12624871 G
1 G
12624872 ATTTTAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:12624870 original size:196 final size:196
Alignment explanation
Indices: 12624522--12624874 Score: 539
Period size: 196 Copynumber: 1.8 Consensus size: 196
12624512 GCTACAGTAA
* * * *
12624522 GATCGACACCACATAGGGGGGATCAGGTCGATCCTCGGTTTACTCATTCTGCCTCTCCGATCGGC
1 GATCGACACCACATAGGGGGGATCAGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGATCGGC
*
12624587 TGAGCGCTCGCACGCTCGTTTCAGGGGTTAGCTTAGGCATACGGAGTTCATTACATGTCTAAGCA
66 TGAGCGCCCGCACGCTCGTTTCAGGGGTTAGCTTAGGCATACGGAGTTCATTACATGTCTAAGCA
*
12624652 TACGGAGTTCATTCCCAGTCTAAGATTAGACTAGATCGAGGGTTGCGGTAGCAGGACCAGCAGCA
131 TACAGAGTTCATTCCCAGTCTAAGATTAGACTAGATCGAGGGTTGCGGTAGCAGGACCAGCAGCA
12624717 G
196 G
* * * * *
12624718 GATCGACAGCACGTAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCTGA-CTGG
1 GATCGACACCACATAGGGGGGATCAGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGATC-GG
* *
12624782 CTGAGCGCCCGCACGCTCGTTTC-GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
65 CTGAGCGCCCGCACGCTCGTTTCAG-GGGTTAGCTTAGGCATACGGAGTTCATTACATGTCTAAG
* *
12624846 CATACAGAGTTGATTCCTAGTCTAAGATT
129 CATACAGAGTTCATTCCCAGTCTAAGATT
12624875 TTAAGCCACC
Statistics
Matches: 140, Mismatches: 15, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
195 2 0.01
196 138 0.99
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.25
Consensus pattern (196 bp):
GATCGACACCACATAGGGGGGATCAGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGATCGGC
TGAGCGCCCGCACGCTCGTTTCAGGGGTTAGCTTAGGCATACGGAGTTCATTACATGTCTAAGCA
TACAGAGTTCATTCCCAGTCTAAGATTAGACTAGATCGAGGGTTGCGGTAGCAGGACCAGCAGCA
G
Found at i:12626079 original size:26 final size:26
Alignment explanation
Indices: 12626042--12626094 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12626032 GTTGGCTTAG
*
12626042 GCATACGTAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCGA-GTCTAA
12626068 GCATACGGAGTTCATTCCGAGTCTAA
1 GCATACGGAGTTCATTCCGAGTCTAA
12626094 G
1 G
12626095 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCGAGTCTAA
Found at i:12626629 original size:26 final size:26
Alignment explanation
Indices: 12626593--12626645 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12626583 GTTGGCTTAG
12626593 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12626619 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12626645 G
1 G
12626646 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12628584 original size:26 final size:26
Alignment explanation
Indices: 12628550--12628601 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12628540 GTTGACATAG
12628550 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12628576 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12628602 AATCGGATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12629712 original size:26 final size:26
Alignment explanation
Indices: 12629683--12629735 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12629673 GTTGACTTAG
*
12629683 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
12629709 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
12629735 G
1 G
12629736 ATCAAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:12630003 original size:159 final size:157
Alignment explanation
Indices: 12629782--12630215 Score: 471
Period size: 159 Copynumber: 2.7 Consensus size: 157
12629772 CAGCCTGCAG
* * **
12629782 GGGGGATCGAGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCCCCCGCACGCC
1 GGGGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGTC-GCTGAGTGCCCGCACGCC
* * * *
12629847 CGTTTCATGAGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACTGAGG
65 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACTGAGG
* *
12629911 GTTGTGGCAGCGGGA-CTAACAGCACGTA
130 GTTGTGACAGCAGGATC-AACAGCACGTA
* * * *
12629939 GAAGGGGATCGGGCCAATCCTCGACTTGCACATTATGCCTCTCCGGTCTGCTCAGTGCCCGCACG
1 G--GGGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGTC-GCTGAGTGCCCGCACG
* * * *
12630004 CTCGTTTCATGGGTTGACTTGGGCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTG
63 CCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACTG
* * * *
12630067 AGGGTTGTGACAGTAGGATCGATAGCATGTA
127 AGGGTTGTGACAGCAGGATCAACAGCACGTA
* * * * * *
12630098 GGGGGACCAGGTCGATCCTCGGCTTGTGCATTCTGCCTCTCCAGTCGACTGAGTGCCCGCACGCA
1 GGGGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGTCG-CTGAGTGCCCGCACGC-
* *
12630163 TGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
64 --C-CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
12630216 TACGAGTTCA
Statistics
Matches: 227, Mismatches: 38, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
156 1 0.00
157 52 0.23
158 3 0.01
159 124 0.55
160 7 0.03
161 39 0.17
162 1 0.00
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.24
Consensus pattern (157 bp):
GGGGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGTCGCTGAGTGCCCGCACGCCC
GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACTGAGGG
TTGTGACAGCAGGATCAACAGCACGTA
Found at i:12630225 original size:25 final size:26
Alignment explanation
Indices: 12630187--12630238 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
12630177 GTTGGCTTAG
12630187 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12630213 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12630238 G
1 G
12630239 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12630572 original size:26 final size:26
Alignment explanation
Indices: 12630542--12630594 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12630532 GTTGACTTAG
*
12630542 GCATATAGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
*
12630568 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12630594 G
1 G
12630595 ATCTGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12630961 original size:159 final size:159
Alignment explanation
Indices: 12630762--12631055 Score: 349
Period size: 159 Copynumber: 1.8 Consensus size: 159
12630752 CCAGTCGGAA
* * * ** * **
12630762 CGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGACCGGACTGATCCCCGGCTTGCGTA
1 CGAGGGTTGTGACAGCAAGACCGACAACACGCAGAGGGGGACCGGACCAATCCCCGACTTGCACA
* ** * * * * *
12630827 TTATGCCTCTTTGG-CTGGCTAAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGA
66 TTATACCTCTCCGGTC-AGCTAACCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
12630891 GTTCATTTGTAGTCTAAGATCGAACCAGAT
130 GTTCATTTGTAGTCTAAGATCGAACCAGAT
* * * * *
12630921 CGAGGGTTGTGACAGCAAGATCGACAATACGTAG-GAGGGGATCGGGCCAATCCCCGACTTGCAC
1 CGAGGGTTGTGACAGCAAGACCGACAACACGCAGAG-GGGGACCGGACCAATCCCCGACTTGCAC
* *
12630985 ATTCTACCTCTCCGGTCAGCTGACCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
65 ATTATACCTCTCCGGTCAGCTAACCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
12631050 GTTCAT
130 GTTCAT
12631056 CCCCAGTCTA
Statistics
Matches: 110, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
158 1 0.01
159 108 0.98
160 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (159 bp):
CGAGGGTTGTGACAGCAAGACCGACAACACGCAGAGGGGGACCGGACCAATCCCCGACTTGCACA
TTATACCTCTCCGGTCAGCTAACCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAG
TTCATTTGTAGTCTAAGATCGAACCAGAT
Found at i:12631077 original size:26 final size:26
Alignment explanation
Indices: 12631041--12631093 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12631031 GTTGACTTAG
*
12631041 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
12631067 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
12631093 G
1 G
12631094 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:12631388 original size:159 final size:160
Alignment explanation
Indices: 12631205--12631571 Score: 411
Period size: 159 Copynumber: 2.3 Consensus size: 160
12631195 CCAGCTTGCC
* * * *
12631205 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACTGAA-
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGAC-CAAG
* * * * * * * * *
12631268 GGTTGTGGCAGTGGGACTGACAGCATGTAGAGGGGGA-CTGGGTTGATCCTCGGCTTGCGCATTA
65 GGTTGCGGCAATAGGACTGACAGCACGTAGAGGGGGATC-GAGTTAAACCTCGACTTACGCATTA
* * * *
12631332 TGCCTCTTCGATCGGCTCAGTGCCCGTACGCT
129 TGCATCTCCGATCGGCTCAGTGCCCGCACACT
* * * * *
12631364 CGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCA-GTCTATG-ATCAGACCAGACCAAG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCAAG
* * *
12631427 GGTTGCGGCAATAGGATTGACAGCACGTAGAGGGGGATCGAGTTAAACCTCGATTTACGCATTTT
65 GGTTGCGGCAATAGGACTGACAGCACGTAGAGGGGGATCGAGTTAAACCTCGACTTACGCATTAT
* * *
12631492 GCATCTCCGGTCGGTTGAGTGCCCGCACACT
130 GCATCTCCGATCGGCTCAGTGCCCGCACACT
*
12631523 CGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
12631572 TATGGAGTTC
Statistics
Matches: 169, Mismatches: 33, Indels: 11
0.79 0.15 0.05
Matches are distributed among these distances:
158 8 0.05
159 156 0.92
160 5 0.03
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.27
Consensus pattern (160 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGG
GTTGCGGCAATAGGACTGACAGCACGTAGAGGGGGATCGAGTTAAACCTCGACTTACGCATTATG
CATCTCCGATCGGCTCAGTGCCCGCACACT
Found at i:12631398 original size:502 final size:500
Alignment explanation
Indices: 12630515--12631800 Score: 1388
Period size: 502 Copynumber: 2.5 Consensus size: 500
12630505 TTGAGCGTCT
* ** *
12630515 GCACGCTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATCCTCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
* * * ** * * *
12630580 CATTCCCAGTCTAAGATCTGATCGAACCAAGGGTTGCGGCAGTAGGATCGACAGCACGTAGGGAG
66 CATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAACAATAGGATCGACAGCACGCAGGGGG
* * * ** *
12630645 ATCAAGCTGAT-CCCG-CTTGAGCATTCTACCTCT-TTGGTC-AGTTGAGCGCCCGCACGCCCGT
131 ATCGAGC-GATCCCCGACTTGCGCATTCTGCCTCTCTT-ACCGA-TTGAGCGCCAGCACGCCCGT
* * *
12630706 TTCATGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAAC-GAGGGTT
193 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG-ACTGAGGGTT
*
12630770 GTGGCAGCGAGACCGACAGCACGCAGAGGGGGACCGGACTGATCCCCGGCTTGCGTATTATGCCT
257 GTGGCAGCGAGACCGACAGCACGCAGAGGGGGACCGGACTGATCCCCGGCTTGCGCATTATGCCT
* * * **
12630835 CTTTGGCTGGCTAAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTTG
322 CTTCGGCTGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCC
* * * * * *
12630900 TAGTCTAAGATC-GAACCAGATCGAGGGTTGTGACAGCAAGATCGACAATACGTAG-GAGGGGAT
387 CAGTCTAAGATCAG-ACCAGACCAAGGGTTGCGACAACAAGATCGACAACACGTAGAG-GGGGAT
* * * *
12630963 CGGGCCAATCCCCGACTTGCACATTCTACCTCTCCGGTCAGCTGACCGCCC
450 CGAGCCAAACCCCGACTTACACATTCTACATCTCCGGTCAGCTGACCGCCC
*
12631014 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
* *
12631079 CATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGCAACAATAGCATCGACAGCACGCAGGAGG
66 CATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAACAATAGGATCGACAGCACGCAGG-GG
* * **
12631144 GATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCTTACCGACTGAGCGCCAGCTTGCCCGTT
130 GATCGAG-CGATCCCCGACTTGCGCATTCTGCCTCTCTTACCGATTGAGCGCCAGCACGCCCGTT
*
12631209 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAAGGTTGT
194 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGT
* * * * * * ** *
12631274 GGCAGTGGGACTGACAGCATGTAGAGGGGGACTGGGTTGATCCTCGGCTTGCGCATTATGCCTCT
259 GGCAGCGAGACCGACAGCACGCAGAGGGGGACCGGACTGATCCCCGGCTTGCGCATTATGCCTCT
* * * *
12631339 TC-GATCGGCTCAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCC
324 TCGGCT-GGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCC
* * * * * *
12631403 AGTCTATGATCAGACCAGACCAAGGGTTGCGGCAATAGGATTGACAGCACGTAGAGGGGGATCGA
388 AGTCTAAGATCAGACCAGACCAAGGGTTGCGACAACAAGATCGACAACACGTAGAGGGGGATCGA
** * * * * * * * **
12631468 GTTAAACCTCGATTTACGCATTTTGCATCTCCGGTCGGTTGAGTGCCC
453 GCCAAACCCCGACTTACACATTCTACATCTCCGGTCAGCTGACCGCCC
* * * * *
12631516 GCACACTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATATGGAGT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGT
* * *
12631580 TCATT-CCATGTCTAAGATCGGATGGGACCGAGGGTTGTGGCAGCAGGACCAGCTGCAGGATCGA
65 TCATTCCCA-GTCTAAGATCAGATCGGACCGAGGG-T-T----GCA--A-CA-AT--AGGATCGA
* * * **
12631644 CAGCATGCAGGGGGGACCGAGCCGATCCCC-AGCATGCGCATTCTGCCTCTCCGACCGATTGAGC
117 CAGCACGCA-GGGGGATCGAG-CGATCCCCGA-CTTGCGCATTCTGCCTCTCTTACCGATTGAGC
* * * ** *
12631708 GCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACAGAGTTCATTCCATGTCTAAGCCTCAGC
179 GCCAGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* * *
12631773 TGGGCTGAGGGTTGTGGCAGCAAGACCG
244 CGGACTGAGGGTTGTGGCAGCGAGACCG
12631801 GCAGTGAGAT
Statistics
Matches: 652, Mismatches: 109, Indels: 37
0.82 0.14 0.05
Matches are distributed among these distances:
499 113 0.17
500 9 0.01
501 15 0.02
502 362 0.56
503 6 0.01
504 1 0.00
508 3 0.00
510 1 0.00
511 2 0.00
512 1 0.00
513 1 0.00
514 136 0.21
515 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (500 bp):
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAACAATAGGATCGACAGCACGCAGGGGG
ATCGAGCGATCCCCGACTTGCGCATTCTGCCTCTCTTACCGATTGAGCGCCAGCACGCCCGTTTC
GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGG
CAGCGAGACCGACAGCACGCAGAGGGGGACCGGACTGATCCCCGGCTTGCGCATTATGCCTCTTC
GGCTGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCAGT
CTAAGATCAGACCAGACCAAGGGTTGCGACAACAAGATCGACAACACGTAGAGGGGGATCGAGCC
AAACCCCGACTTACACATTCTACATCTCCGGTCAGCTGACCGCCC
Found at i:12631579 original size:26 final size:26
Alignment explanation
Indices: 12631543--12631595 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12631533 GTTGGCTTAG
12631543 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
12631569 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
12631595 G
1 G
12631596 ATCGGATGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:12631959 original size:26 final size:26
Alignment explanation
Indices: 12631923--12631975 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12631913 GTTGACTTAG
12631923 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
12631949 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12631975 G
1 G
12631976 ATCGGGTCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12632293 original size:26 final size:26
Alignment explanation
Indices: 12632263--12632315 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12632253 GTTGGCTTAG
12632263 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
12632289 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12632315 G
1 G
12632316 AATTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12639217 original size:151 final size:151
Alignment explanation
Indices: 12638863--12639381 Score: 470
Period size: 151 Copynumber: 3.3 Consensus size: 151
12638853 CCCAGTCTAA
* * *
12638863 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGAAC-GAGGGTTGCGGCAGCGGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACTGAGGGTTGTGGCAGCGGGATCGAC
* * * ** *
12638927 AGCACGCAGGAGAGATCGGGTCGATCCCCGA-ATTGCACATTCTGCCTCTCTGGCCGGCTGAGTG
65 AGCA--C--G-TAG--CGGGTCGATCCCCGACA-TGCGCATTCTGCCTCTCCGATCGGCTGAGCG
* *
12638991 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
122 CCCACACGCTCGTTTCATGGGTTGGCTTAG
* ** * ** * * *
12639021 GCATAAGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGGCCGAGGGTTGTGGCAACGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACTGAGGGTTGTGGCAGCGGGATCGA
* * * *
12639084 CAGTACGTAGCGGGTCGATCCTCGACATACGCATTCTGCCTCTCCGATCGGCTCAGCGCCCACAC
64 CAGCACGTAGCGGGTCGATCCCCGACATGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCACAC
* *
12639149 ACTCGTTTCATGGGTTGACTTAG
129 GCTCGTTTCATGGGTTGGCTTAG
* * * *
12639172 GCATACGTAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGTGGCAGCGGGATCGACA
* * * * *
12639237 GCACGTAGGGGGGACCTGACGGGTCCCCGACATGCGCATTCTGACTCTTCGATCGGTTGAGCGCC
66 GCACGTA-GCGGG---T--C-GATCCCCGACATGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
* *
12639302 CGTATGCACGCTCATTTCGTGGGTTGGCTTAG
124 C--A--CACGCTCGTTTCATGGGTTGGCTTAG
*
12639334 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAAGGTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTG
12639382 CAGGAGTAGG
Statistics
Matches: 292, Mismatches: 52, Indels: 30
0.78 0.14 0.08
Matches are distributed among these distances:
150 3 0.01
151 116 0.40
152 8 0.03
153 2 0.01
154 1 0.00
155 1 0.00
156 1 0.00
157 5 0.02
158 84 0.29
159 3 0.01
160 1 0.00
162 67 0.23
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (151 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGTGGCAGCGGGATCGACA
GCACGTAGCGGGTCGATCCCCGACATGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCACACGC
TCGTTTCATGGGTTGGCTTAG
Found at i:12639722 original size:26 final size:26
Alignment explanation
Indices: 12639686--12639735 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
12639676 GTTGACTTAG
*
12639686 GCATACAGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12639712 GCATACGGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATTCCCAGTCT
12639736 CAGATCGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12640366 original size:13 final size:13
Alignment explanation
Indices: 12640333--12640369 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
12640323 TGCGCATTCT
*
12640333 GCCTCTCCGATCA
1 GCCTCTCTGATCA
*
12640346 GCCTCTCTGATCG
1 GCCTCTCTGATCA
12640359 GCCTCTCTGAT
1 GCCTCTCTGAT
12640370 TGGTTGAGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.11, C:0.41, G:0.19, T:0.30
Consensus pattern (13 bp):
GCCTCTCTGATCA
Found at i:12640788 original size:26 final size:26
Alignment explanation
Indices: 12640752--12640804 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12640742 GTTGGCTTAG
12640752 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12640778 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12640804 G
1 G
12640805 AGCTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12641506 original size:25 final size:26
Alignment explanation
Indices: 12641476--12641527 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
12641466 GTTGACTTAG
12641476 GCATACAGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12641501 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12641527 G
1 G
12641528 ATCGGATCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12641688 original size:26 final size:26
Alignment explanation
Indices: 12641659--12641711 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12641649 GTTGGCTTAG
12641659 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12641685 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12641711 G
1 G
12641712 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12641892 original size:26 final size:26
Alignment explanation
Indices: 12641856--12641908 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12641846 GTTGACTTAG
12641856 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12641882 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12641908 G
1 G
12641909 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12641907 original size:197 final size:196
Alignment explanation
Indices: 12641550--12641911 Score: 494
Period size: 197 Copynumber: 1.8 Consensus size: 196
12641540 CGAGGGTTGC
** * *
12641550 AGCAGTAAGATCAGCAGCTTGCAGGGGGGATCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTC
1 AGCAGTAAGATCAGCAGCACGCAGGGGGGACCAGGTCGATCCTCGGCTTACGCATTCTGCCTCTC
** ** * * *
12641615 CGACCGGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
66 CGACCGGCTGAGCACCCACACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATG
*
12641680 TCTAAGCATACGGAGTTCCTTCCCAGTCTAAGATCAGACTGGACCTAGGGTTACGGCAGCAGGAC
131 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCTAGGGTTACGGCAGCAGGAC
12641745 T
196 T
* * **
12641746 AGCAGTAGGATCGGCAGCACGCAAGGGGGGACCAGGTCGATCC-CTGGCTTGTGCATTCTGCCTC
1 AGCAGTAAGATCAGCAGCACGC-AGGGGGGACCAGGTCGATCCTC-GGCTTACGCATTCTGCCTC
* * * *
12641810 TCCGATCGGTTGAGCACCCACACACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCC
64 TCCGACCGGCTGAGCACCCACACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCC
*
12641875 A-GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
128 ATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
12641912 GAATCGGATC
Statistics
Matches: 142, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
196 19 0.13
197 120 0.85
198 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (196 bp):
AGCAGTAAGATCAGCAGCACGCAGGGGGGACCAGGTCGATCCTCGGCTTACGCATTCTGCCTCTC
CGACCGGCTGAGCACCCACACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATG
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCTAGGGTTACGGCAGCAGGAC
T
Found at i:12649121 original size:26 final size:26
Alignment explanation
Indices: 12649091--12649168 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
12649081 GTTGGCTTAG
* *
12649091 GCATACGAAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
12649117 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
12649143 GCATACGGAGTTCATTCCA-GTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
12649168 G
1 G
12649169 ATCAGACCGA
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
25 7 0.14
26 43 0.86
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:12649531 original size:26 final size:26
Alignment explanation
Indices: 12649494--12649546 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12649484 GTTAATTTAG
* *
12649494 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
12649520 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
12649546 G
1 G
12649547 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:12653135 original size:18 final size:18
Alignment explanation
Indices: 12653094--12653136 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
12653084 GGATGGGGTA
*
12653094 CTTGTCCTTGATGGTCAG
1 CTTGTTCTTGATGGTCAG
12653112 CTTGTTCTTGATGGTCAG
1 CTTGTTCTTGATGGTCAG
12653130 CTTGTTC
1 CTTGTTC
12653137 AAAGCCCGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.09, C:0.21, G:0.26, T:0.44
Consensus pattern (18 bp):
CTTGTTCTTGATGGTCAG
Found at i:12655568 original size:26 final size:26
Alignment explanation
Indices: 12655532--12655584 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12655522 GTTGACTTAG
12655532 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12655558 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12655584 G
1 G
12655585 ACCGGACAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12656406 original size:26 final size:26
Alignment explanation
Indices: 12656370--12656422 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12656360 GTTAACTTAG
*
12656370 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
12656396 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12656422 G
1 G
12656423 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12656891 original size:159 final size:155
Alignment explanation
Indices: 12656396--12656900 Score: 494
Period size: 160 Copynumber: 3.2 Consensus size: 155
12656386 CCTAGTCTAA
* ** **
12656396 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTAAGG-AG-AGGATCGACA
* * * ** * * * *
12656461 GCATGTA-GGGGGATCGAGCTGATCCCCGACTTATGCATTCTGCCTCTCTGGCCGGCTGAGCGCC
64 GCACGCAGGGGGGATCGGGCTGATCCCCG-CTTGCGCATTCTGCCTCTCCGACCGGTTGAGCACC
* * *
12656525 CGCACACCCGTTTCGTGGGTTGGCTTAG
128 CGCACACTCATTTCATGGGTTGGCTTAG
* ** * *** * * *
12656553 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTTAGACCGAGGGTTGTA-GAGGGGTACCGAC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCAGACCGAGGGTT-AAGGAGAGG-ATCGAC
* * * *
12656616 AGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGACCCGGTCTCAG
63 AGCACGCAG-GGGGGATCGGGCTGATCCCC-GCTTGCGCATTCTGCCTCTCCGA-CCGGT-TGAG
* * * *
12656681 CACCCGCACATTCTTTTCATGGGTTGACTTAT
124 CACCCGCACACTCATTTCATGGGTTGGCTTAG
* * *
12656713 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTAAGGCAGTAGGATTGAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTAAGG-AG-AGGATCGACA
12656778 GCACGCAAGGGGGGATCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCAC
64 GCACGC-AGGGGGGATCGGGCTGATCCCC-GCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCAC
* * *
12656843 CCGCACGCTCATTTCATGGATTGGCGTAG
127 CCGCACACTCATTTCATGGGTTGGCTTAG
12656872 GCATACGGAGTTCATTCCCAGTCTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
12656901 TTTGAGTCAC
Statistics
Matches: 278, Mismatches: 57, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
155 2 0.01
156 16 0.06
157 35 0.13
158 34 0.12
159 63 0.23
160 69 0.25
161 55 0.20
162 4 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTAAGGAGAGGATCGACAGC
ACGCAGGGGGGATCGGGCTGATCCCCGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCACCCGC
ACACTCATTTCATGGGTTGGCTTAG
Found at i:12657596 original size:26 final size:26
Alignment explanation
Indices: 12657566--12657644 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
12657556 GTTGACTTAG
12657566 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12657592 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12657618 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12657644 G
1 G
12657645 ATCGGACCGA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12659061 original size:26 final size:26
Alignment explanation
Indices: 12659025--12659077 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12659015 GTTGGCTTAG
*
12659025 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12659051 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12659077 G
1 G
12659078 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12659192 original size:11 final size:11
Alignment explanation
Indices: 12659147--12659195 Score: 71
Period size: 11 Copynumber: 4.5 Consensus size: 11
12659137 CCTGGGGCAC
* *
12659147 CATCGTCGGAC
1 CATCGTCGAAG
12659158 CATCGTCGAAG
1 CATCGTCGAAG
*
12659169 CATCGTCGGAG
1 CATCGTCGAAG
12659180 CATCGTCGAAG
1 CATCGTCGAAG
12659191 CATCG
1 CATCG
12659196 CTGGAGAGCC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 34 1.00
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (11 bp):
CATCGTCGAAG
Found at i:12659201 original size:22 final size:22
Alignment explanation
Indices: 12659147--12659195 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
12659137 CCTGGGGCAC
*
12659147 CATCGTCGGACCATCGTCGAAG
1 CATCGTCGGAGCATCGTCGAAG
12659169 CATCGTCGGAGCATCGTCGAAG
1 CATCGTCGGAGCATCGTCGAAG
12659191 CATCG
1 CATCG
12659196 CTGGAGAGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (22 bp):
CATCGTCGGAGCATCGTCGAAG
Found at i:12659811 original size:26 final size:26
Alignment explanation
Indices: 12659781--12659833 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12659771 GTTGACTTTG
12659781 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
12659807 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12659833 G
1 G
12659834 TTCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12660331 original size:26 final size:26
Alignment explanation
Indices: 12660282--12660334 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12660272 GTTGGCTTAG
* *
12660282 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTAATTCCATGTCTAA
12660308 GCATACGGAGTTAATTCCCA-GTCTAA
1 GCATACGGAGTTAATT-CCATGTCTAA
12660334 G
1 G
12660335 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCATGTCTAA
Found at i:12660692 original size:26 final size:26
Alignment explanation
Indices: 12660662--12660714 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12660652 GTTGACTTAG
12660662 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12660688 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12660714 G
1 G
12660715 ATTTGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12660989 original size:159 final size:158
Alignment explanation
Indices: 12660688--12661191 Score: 502
Period size: 158 Copynumber: 3.2 Consensus size: 158
12660678 CCCAGTCTAA
*** * * *
12660688 GCATACGGAGTTCATTCCCA-GTCTAAG-ATTTGATCGGA-TCGAGGGTTGCGTCTGCAGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACT-GAGGGTTGCGGCAGCAGGATCG
* ** * * *
12660750 ACAGCACGCAGGATGGATCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGCCGGTTGAGC
64 CCAGCATACAGGAGGGATCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTTCGGCC-GCTGAGC
*
12660815 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 ACTCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * ** *
12660846 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TTGGATTGAGGGTTGCGGCAGTGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACTGAGGGTTGCGGCAGCAGGATC-GC
* * * * * *
12660909 CAGCACGTAGAGG-GGGATCGAGTCGATCCCC-GACTTGCGTATTATGCCTCTTCGGCCAGCTCA
65 CAGCA--TACAGGAGGGATCGGGTCGATCCCCAG-CTTGTGCATTCTGCCTCTTCGGCC-GCTGA
* * * *
12660972 GCTCTCGCACGCTCGTTTCATGGGTTGACTTAT
126 GCACTCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
12661005 GCATACGAAGTTCATTCCATGTCTAAG-ATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGCC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGCC
* * ** *
12661069 AGTATACAGGAGGGATCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTTCGATCGACTGAGCGC
66 AGCATACAGGAGGGATCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTTCGGCCG-CTGAGCAC
12661134 TCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 TCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
12661163 GCATATGGAATTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
12661192 TACGAAGTTC
Statistics
Matches: 277, Mismatches: 56, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
157 10 0.04
158 142 0.51
159 121 0.44
160 4 0.01
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.26
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGCC
AGCATACAGGAGGGATCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTTCGGCCGCTGAGCACT
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12662541 original size:26 final size:26
Alignment explanation
Indices: 12662512--12662564 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12662502 GTTGACTTAG
*
12662512 GCATACGGAGTTCATCCCCAGCCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
* *
12662538 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
12662564 G
1 G
12662565 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGCCTAA
Found at i:12662867 original size:159 final size:158
Alignment explanation
Indices: 12662538--12662970 Score: 383
Period size: 159 Copynumber: 2.7 Consensus size: 158
12662528 CCCAGCCTAA
* * * * * * *
12662538 GCATACGAAGTTCATTCCCAGTCTAAGA-TCAGACCGGACCGAGGGTTACGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAATCTAAGACCCA-ATCGGACCGAGGGTTATGGCAACAGGACCGAC
* * * * * * * * * * * *
12662602 AGCACGTAAGGGGGATCGGGCCGATCCTCC-ACTTGTGCATTCTGCCTCTCTGACT-GGCTGAGC
65 AGCAAGCAACGGGGACCGGGTCAATCC-CCGACTTGCGCATTATGCCTCTCCG-GTAAGCTCAGC
* * *
12662665 AG-CCGCACAGC-CGTTTCGTGGGTTGGCTTAC
128 -GCCCGTAC-GCTCGTTTCATGGGTTGACTTAC
* * * *
12662696 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAATCGGACTGAGGGTTATGGCAACAGGACCGAC
1 GCATACGGAGTTCATTCCCA-ATCTAAGACCCAATCGGACCGAGGGTTATGGCAACAGGACCGAC
*
12662760 AGCAAGCAAACGGGGACCGGGTCAATCCCCGGCTTGCGCATTATGCCTCTCCGGTAAGCTCAGCG
65 AGCAAGC-AACGGGGACCGGGTCAATCCCCGACTTGCGCATTATGCCTCTCCGGTAAGCTCAGCG
*
12662825 CCCGTACGCTCGTTTCATGGGTTGACTTAG
129 CCCGTACGCTCGTTTCATGGGTTGACTTAC
* ** * * ** *
12662855 GCATACGGAGTTCATTCCCAATCTAAGATCTGATCGGACCGAGGGTTGTGGCAGCAGGATTGATA
1 GCATACGGAGTTCATTCCCAATCTAAGACCCAATCGGACCGAGGGTTATGGCAACAGGACCGACA
* ** ** *
12662920 GCACGCAGGGGGGACCGGGTCGGTCCCCGACTTGCGCATTCTGCCTCTCCG
66 GCAAGCAACGGGGACCGGGTCAATCCCCGACTTGCGCATTATGCCTCTCCG
12662971 ACCGGCTGAG
Statistics
Matches: 222, Mismatches: 45, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.01
158 98 0.44
159 118 0.53
160 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAATCTAAGACCCAATCGGACCGAGGGTTATGGCAACAGGACCGACA
GCAAGCAACGGGGACCGGGTCAATCCCCGACTTGCGCATTATGCCTCTCCGGTAAGCTCAGCGCC
CGTACGCTCGTTTCATGGGTTGACTTAC
Found at i:12663017 original size:158 final size:157
Alignment explanation
Indices: 12662535--12663039 Score: 482
Period size: 158 Copynumber: 3.2 Consensus size: 157
12662525 ATCCCCAGCC
* * *
12662535 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTATGGCAGCAGGATCG
* * * * * *
12662600 ACAGCACGTAAGGGGGATCGGGCCGATCCTCC-ACTTGTGCATTCTGCCTCTCTGACTGGCTGAG
66 ACAGCACGCAAGGGGGACCGGGTCGATCC-CCGACTTGCGCATTCTGCCTCTCCGACAGGCTGAG
* **
12662664 CAGCCGCACAGC-CGTTTCGTGGGTTGGCT
130 CA-CCGCACA-CTCGTTTTGCAGGTTGGCT
* * ** * * *
12662693 TACGCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ATCGGACTGAGGGTTATGGCAACAGGAC
1 TAAGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTATGGCAGCAGGAT
* * * * * ** * *
12662756 CGACAGCAAGCAAACGGGGACCGGGTCAATCCCCGGCTTGCGCATTATGCCTCTCCGGTAAGCTC
64 CGACAGCACGC-AAGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACAGGCTG
* * * *
12662821 AGCGCCCGTACGCTCG-TTT-CATGGGTTGACT
128 AGC-ACCGCACACTCGTTTTGCA--GGTTGGCT
* * * * *
12662852 TAGGCATACGGAGTTCATTCCCAATCTAAGATCTGATCGGACCGAGGGTTGTGGCAGCAGGATTG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTATGGCAGCAGGATCG
* * * *
12662917 ATAGCACGCAGGGGGGACCGGGTCGGTCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
66 ACAGCACGCAAGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACAGGCTGAGC
*
12662982 ACTTGCACACTCGTTTTGCAGGTTGGCT
131 AC-CGCACACTCGTTTTGCAGGTTGGCT
**
12663010 TAAGCATACGGAGTTCATTCCGTGTCTAAG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAG
12663040 CATACGAAGC
Statistics
Matches: 269, Mismatches: 65, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
157 4 0.01
158 146 0.54
159 114 0.42
160 5 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTATGGCAGCAGGATCG
ACAGCACGCAAGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACAGGCTGAGC
ACCGCACACTCGTTTTGCAGGTTGGCT
Found at i:12663053 original size:26 final size:26
Alignment explanation
Indices: 12663010--12663065 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
12663000 CAGGTTGGCT
* *
12663010 TAAGCATACGGAGTTCATTCCGT-GTC
1 TAAGCATACGAAGCTCATTCC-TAGTC
12663036 TAAGCATACGAAGCTCATTCCTAGTC
1 TAAGCATACGAAGCTCATTCCTAGTC
12663062 TAAG
1 TAAG
12663066 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 1 0.04
26 26 0.96
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGAAGCTCATTCCTAGTC
Found at i:12663247 original size:26 final size:26
Alignment explanation
Indices: 12663210--12663262 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12663200 GTTGACTTAG
*
12663210 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGAAGTTCACT-CCCAGTCTAA
12663236 GCATACGAAGTTCACTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
12663262 G
1 G
12663263 ATCGGTCTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGTCTAA
Found at i:12663475 original size:698 final size:695
Alignment explanation
Indices: 12662120--12663765 Score: 2149
Period size: 698 Copynumber: 2.4 Consensus size: 695
12662110 CTGATCCCCG
* * *
12662120 GCTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAG
1 GCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * *
12662185 ATCGGATTGGATCGAGGGTTGCGGCAGCAGGATCGGTAGCACGTAGGAAGGACCGGG-CTGGTCC
66 ATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAGGGAGGACCGGGTC-GGTCC
* * * * ** *
12662249 TCGGCTTGCACATTCTGCCACTCCGATCGACTGAGCGCCCGCATGCTCGTTCTGTGGGTTGGCTT
130 CCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACACTCGTTCTG-CGGTTGGCTT
* * * *
12662314 AGGCATACAGAGTTCATTCCATGTATAAGCATACGAAGGTCATTCCCAGTCTAAGATCGGACCGG
194 AGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGCTCATTCCCAGTCTAAGATCGGACCAG
* * * **
12662379 ACCGAGGGTAGTGACAGCGGGTCCAGTAGCAGGATCGATAGCACGTAGGGGGGATCGGGCCGATC
259 ACCAAGGGTA-TGACAGAGGGACCAGTAGCAGGATCGATAGCACACAGGGGGGATCGGGCCGATC
** * *
12662444 CCCGACTTGCGCATTCTGCCTCTCCGACCGGTTGAGCACCCGTACGCTCGTTTTGTGGGTTGACT
323 CCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGATCGTTTTGTGGGTTGACT
*
12662509 TAGGCATACGGAGTTCATCCCCAGCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCG
388 TAGGCATACGGAGTTCATCCCCAGCCTAAGCATACGAAGTTCACTCCCAGTCTAAGATCAGACCG
* **
12662574 GACCGAGGGTTACGGCAGCAGGATCGACAGCACGTAAGGGGGATCGGGCCGATCCTCCACTTGTG
453 GACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAAGGGGGATCGGGCCGATCCTCCACTTGCA
* * *
12662639 CATTCTGCCTCTCTGACTGGCTGAGCAGCCGCACAGCCGTTTCGTGGGTTGGCTTACGCATAGGG
518 CATTCTGCCTCTCCGACCGGCTGAGCAGCCGCACAGCCATTTCGTGGGTTGGCTTACGCATAGGG
* *
12662704 AGTTCATTCCATGTCTAAGCCCCAATCGGACTGAGGGTTATGGCAACAGGACCGACAGCAAGCAA
583 AGTTCATTCCATGTCTAAGCCCCAACCGAACTGAGGGTTATGGCAACAGGACCGACAGCAAGCAA
*
12662769 ACGGGGACCGGG-TCAATCCCCGGCTTGCGCATTATGCCTCTCCGGTAA
648 ACGGGGACCGGGCT-AATCCCCGGCTTGCGCATTATGCCTCTCCGGCAA
* *
12662817 GCTCAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
1 GCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
12662882 ATCTGATCGGACCGAGGGTTGTGGCAGCAGGATTGATAGCACGCAGGGGGGACCGGGTCGGTCCC
66 ATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAGGGAGGACCGGGTCGGTCCC
* * * ** *
12662947 CGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACTTGCACACTCGTTTTGCAGGTTGGCTTA
131 CGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACACTCGTTCTGC-GGTTGGCTTA
* * * *
12663012 AGCATACGGAGTTCATTCCGTGTCTAAGCATACGAAGCTCATTCCTAGTCTAAGATCGGATCAGA
195 GGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGCTCATTCCCAGTCTAAGATCGGACCAGA
* * *
12663077 TCAAGGGT-TG-CAGTAGTAGGACCAGTAGCAGGATCGGTAGCACACAGAGGGGGATCGGGTCGA
260 CCAAGGGTATGACAG-AG--GGACCAGTAGCAGGATCGATAGCACACAG-GGGGGATCGGGCCGA
* *
12663140 TCCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGATCGTTTTGTGGGTTGA
321 TCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGATCGTTTTGTGGGTTGA
* * *
12663205 CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCACTCCCAGTCTAAGATCGGTC
386 CTTAGGCATACGGAGTTCATCCCCAGCCTAAGCATACGAAGTTCACTCCCAGTCTAAGATCAGAC
* * ** * * *
12663270 TGGACCGATGGTTGGGGCAGCAGGATCGATAGCACGCAGGGGGGATCGGGCCGATCC-CCGGCTT
451 CGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAAGGGGGATCGGGCCGATCCTCC-ACTT
* * * *
12663334 GCACATTCTGCCTCTCCGGCCGGCTGAG-TGACTGCAC-GCCCATTTCGTGGGTTGGCTTAGGCA
515 GCACATTCTGCCTCTCCGACCGGCTGAGCAG-CCGCACAG-CCATTTCGTGGGTTGGCTTACGCA
* * * * * *
12663397 TAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAA-TCGAGGGTTGTGGCAGCGGGACTGGCAGC
578 TAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACT-GAGGGTTATGGCAACAGGACCGACAGC
* * * * * * * *
12663461 ATGCAGAGGGGGACCGGGCTGATCGCTGGCTTGCGCATTATGCCTCTTCGGCCA
642 AAGCAAACGGGGACCGGGCTAATCCCCGGCTTGCGCATTATGCCTCTCCGGCAA
* * * * *
12663515 GCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTAGG
1 GCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
12663580 ATCGGACCAGACTGAGGGTTGTGGCAGCAGGATCGATAGCACGCAGGAGTGGACCGGGTCGATCC
66 ATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAGG-GAGGACCGGGTCGGTCC
* * * *
12663645 CCGGCTTGTGCATTCTACCTTTCTGACCGACTGAGCGCCCGCACACTCGTTCGTGC-GTTGGCTT
130 CCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACACTCGTTC-TGCGGTTGGCTT
* * * *
12663709 TGGCATACGGTGTTCATTCCATGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGAT
194 AGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGCTCATTCCCAGTCTAAGAT
12663766 TTTGAGCCAT
Statistics
Matches: 818, Mismatches: 118, Indels: 25
0.85 0.12 0.03
Matches are distributed among these distances:
694 3 0.00
695 3 0.00
697 258 0.32
698 493 0.60
699 58 0.07
700 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (695 bp):
GCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
ATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAGGGAGGACCGGGTCGGTCCC
CGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACACTCGTTCTGCGGTTGGCTTAG
GCATACGGAGTTCATTCCATGTCTAAGCATACGAAGCTCATTCCCAGTCTAAGATCGGACCAGAC
CAAGGGTATGACAGAGGGACCAGTAGCAGGATCGATAGCACACAGGGGGGATCGGGCCGATCCCC
GACTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGATCGTTTTGTGGGTTGACTTAG
GCATACGGAGTTCATCCCCAGCCTAAGCATACGAAGTTCACTCCCAGTCTAAGATCAGACCGGAC
CGAGGGTTACGGCAGCAGGATCGACAGCACGCAAGGGGGATCGGGCCGATCCTCCACTTGCACAT
TCTGCCTCTCCGACCGGCTGAGCAGCCGCACAGCCATTTCGTGGGTTGGCTTACGCATAGGGAGT
TCATTCCATGTCTAAGCCCCAACCGAACTGAGGGTTATGGCAACAGGACCGACAGCAAGCAAACG
GGGACCGGGCTAATCCCCGGCTTGCGCATTATGCCTCTCCGGCAA
Found at i:12663685 original size:159 final size:156
Alignment explanation
Indices: 12663236--12663737 Score: 437
Period size: 159 Copynumber: 3.2 Consensus size: 156
12663226 CCCAGTCTAA
* * * * * * *
12663236 GCATACGAAGTTCACTCCCAGTCTAAGATCGGTCTGGACCGATGGTTGGGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-CGACTGAGGGTTGTGGCAGCAGGATCGATA
* * * * *
12663301 GCACGCAGG-GGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGCCGGCTGAGTGA
65 GCACGCAGGAGGGGACCGGG-CGATCCCCGGCTTGCGCATTCTGCCT-TTCGGCCGACTGAGTGC
* * * *
12663365 CTGCACGCCCATTTCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAT
* * ** * *
12663394 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCGAATCGAGGGTTGTGGCAGCGGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGACT-GAGGGTTGTGGCAGCAGGATC-G
** * * * * *
12663456 GCAGCATGCA-GAGGGGGACCGGGCTGATCGCTGGCTTGCGCATTATGCCTCTTCGGCC-AGCTC
62 ATAGCACGCAGGA-GGGGACCGGGC-GATCCCCGGCTTGCGCATTCTGCCT-TTCGGCCGA-CTG
*
12663519 AGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
123 AGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAT
* *
12663553 GCATACAGAGTTCATTCCCAGTCTAGGATCGGACCAGACTGAGGGTTGTGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACTGAGGGTTGTGGCAGCAGGATCGATA
* * * * *
12663618 GCACGCAGGAGTGGACCGGGTCGATCCCCGGCTTGTGCATTCTACCTTTCTGACCGACTGAGCGC
65 GCACGCAGGAGGGGACCGGG-CGATCCCCGGCTTGCGCATTCTGCCTTTC-GGCCGACTGAGTGC
* *
12663683 CCGCACACTCG-TTCGTGCGTTGGCTT-T
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAT
*
12663710 GGCATACGGTGTTCATT-CCATGTCTAAG
1 -GCATACGGAGTTCATTCCCA-GTCTAAG
12663738 CATATGAAGT
Statistics
Matches: 270, Mismatches: 56, Indels: 36
0.75 0.15 0.10
Matches are distributed among these distances:
157 12 0.04
158 82 0.30
159 163 0.60
160 13 0.05
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGACTGAGGGTTGTGGCAGCAGGATCGATAG
CACGCAGGAGGGGACCGGGCGATCCCCGGCTTGCGCATTCTGCCTTTCGGCCGACTGAGTGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAT
Found at i:12663740 original size:26 final size:26
Alignment explanation
Indices: 12663711--12663763 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
12663701 GTTGGCTTTG
**
12663711 GCATACGGTGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
12663737 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12663763 G
1 G
12663764 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12664464 original size:26 final size:26
Alignment explanation
Indices: 12664434--12664486 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12664424 GTTGACTTAG
12664434 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
12664460 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12664486 G
1 G
12664487 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12665217 original size:26 final size:26
Alignment explanation
Indices: 12665188--12665240 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12665178 GTTAGCTTAG
*
12665188 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12665214 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12665240 G
1 G
12665241 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12665939 original size:26 final size:26
Alignment explanation
Indices: 12665909--12665961 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12665899 GTTAACTTAT
12665909 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12665935 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12665961 G
1 G
12665962 ATCAGATGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12672130 original size:26 final size:26
Alignment explanation
Indices: 12672082--12672132 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
12672072 TGGCTTGGGG
* *
12672082 ATACGTAGTTCATTCCATGTCTAAGC
1 ATACGGAGTTCATTCCATATCTAAGC
12672108 ATACGGAGTTCATTCCCA-ATCTAAG
1 ATACGGAGTTCATT-CCATATCTAAG
12672133 ATCGGACCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATATCTAAGC
Found at i:12672814 original size:26 final size:26
Alignment explanation
Indices: 12672778--12672830 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12672768 GTTGGCTTAG
12672778 GCATACAGAGTTCATT-CCACGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12672804 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12672830 G
1 G
12672831 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12673548 original size:26 final size:26
Alignment explanation
Indices: 12673512--12673564 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12673502 GTTGACTTAG
12673512 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12673538 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12673564 G
1 G
12673565 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12674378 original size:170 final size:171
Alignment explanation
Indices: 12674182--12674576 Score: 483
Period size: 171 Copynumber: 2.3 Consensus size: 171
12674172 TGAGCGCCTG
* * ** *
12674182 CACGCTCGTTTTATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCCAGCC-GAC
1 CACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGAC
* * * *
12674246 CGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATC-GACAGTATACAGAGGGGGGTCGGGCTGATC
66 CGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCAG-CAGCACACAGAGGGGGATCGGGCTAATC
* *
12674310 CTCAACTCGT-GCATTCTACCTCTCCGATCGGTTGAGCACCCA
130 CTCAACT-GTCGCAATATACCTCTCCGATCGGTTGAGCACCCA
* * * * *
12674352 CATGCTTGTTTCGTGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTTAGCCCCAACCGGAC
1 CACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGAC
* ** *
12674417 CGAGGGTTGTGGCAGTAGGATTGGTAGCGGGATCAGCAGCACACAGAGGGGGATCGGGCTAATCC
66 CGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCAGCAGCACACAGAGGGGGATCGGGCTAATCC
** * * * *
12674482 TCGGCTTTCGCAATATGCCTCTCCGGTCGGTTGAGCACCCG
131 TCAACTGTCGCAATATACCTCTCCGATCGGTTGAGCACCCA
* *
12674523 CACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
1 CACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGC
12674577 ATACAGAGTT
Statistics
Matches: 188, Mismatches: 33, Indels: 7
0.82 0.14 0.03
Matches are distributed among these distances:
170 52 0.28
171 132 0.70
172 4 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (171 bp):
CACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGAC
CGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCAGCAGCACACAGAGGGGGATCGGGCTAATCC
TCAACTGTCGCAATATACCTCTCCGATCGGTTGAGCACCCA
Found at i:12674579 original size:26 final size:26
Alignment explanation
Indices: 12674549--12674601 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12674539 GTTGACTTAG
*
12674549 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
12674575 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12674601 G
1 G
12674602 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12674763 original size:26 final size:26
Alignment explanation
Indices: 12674733--12674785 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12674723 GTTGGCTTAG
12674733 GCATACGAAATTCATT-CCATGTCTAA
1 GCATACGAAATTCATTCCCA-GTCTAA
* *
12674759 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
12674785 G
1 G
12674786 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:12675500 original size:26 final size:26
Alignment explanation
Indices: 12675461--12675516 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
12675451 TGGGTTGACT
12675461 TAAGCATACAGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
* *
12675487 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
12675513 TAAG
1 TAAG
12675517 ATTGGACTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:12675836 original size:26 final size:26
Alignment explanation
Indices: 12675805--12675857 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12675795 GTTGGCTTAG
12675805 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12675831 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12675857 G
1 G
12675858 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12676029 original size:26 final size:26
Alignment explanation
Indices: 12676000--12676052 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12675990 GTTGGCTTAG
12676000 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
12676026 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12676052 G
1 G
12676053 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12676225 original size:26 final size:26
Alignment explanation
Indices: 12676195--12676247 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12676185 GTAGGCTTGG
*
12676195 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12676221 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12676247 G
1 G
12676248 ATCGGCTCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12676416 original size:197 final size:197
Alignment explanation
Indices: 12675697--12676613 Score: 1017
Period size: 195 Copynumber: 4.7 Consensus size: 197
12675687 GAGGGTTGTG
* * * * * * * *
12675697 ACAGCGGGATCGGCAGCACGCAGAGGGGGATCGAGCCGATCCCCTGCTTGCACATTATGCCTC-T
1 ACAGCAGGATCGACAGCACACAG-GGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTT
* * * * * *
12675761 CCGATCGGCTCAGCACTCGAACACTC-GTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
65 CCGATCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCAT
* * * *
12675825 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGCTTGA-GGTTGTGGTAGCAGGA
130 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGA
12675889 CCA
195 CCA
* * * * * * *
12675892 ACAGTAGGATCGACAGCACGCAGGGGGGACCGGGTCGGTCCTCGACTTACGCATTCTGCCTCTTC
1 ACAGCAGGATCGACAGCACACAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTC
* * * * * * *
12675957 GGCT-AGCTGAGCACCCGTACGCTCGTTGCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATG
66 CGATCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATG
* * * * *
12676021 TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATC-AAGGTTGTGGCAGCAGGAC
131 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGAC
12676085 CA
196 CA
* ** * * * * * * *
12676087 GCAGCAGGATCGGTAGCACACAGGGGGGACCAGGTCGATCACCGACTTACGCGTTCTACCTCTT-
1 ACAGCAGGATCGACAGCACACAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTC
* * * * * *
12676151 CGATCGG-TCGAGCGCCCGTATGCTCATTTCATGGGTAGGCTTGGGCATACGGAGTTCATTCCAT
66 CGATCGGCT-GAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCAT
* * * *
12676215 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGCTCGGATCGAGGGTTACGGTAGCAAGA
130 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGA
12676280 CCA
195 CCA
* * * **
12676283 GCAGCAGGATTGACAGCACACAGGGGGGGATCGGGCCGGTCCCCGGCTTGTGCATTCTGCCT-TT
1 ACAGCAGGATCGACAGCACACA-GGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTT
*
12676347 CCGATCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCAT
65 CCGATCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCAT
* * * * * *
12676412 GTCTAAGCATACGGAGTTCATACCTAATCTATGATCGGATCGGA-CTGAGGGTTGCAGTAGTAGG
130 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATC-GAGGGTTGCGGTAGCAGG
12676476 ACCA
194 ACCA
* * * * * *
12676480 ACAGCAGGATCGACAGCACATAAGAGGGATCAGGCCAATCCCCGGCTTACGCATTCTACCTCTT-
1 ACAGCAGGATCGACAGCACACAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTC
* * * *
12676544 TGGTCGGCTGAGCGCCCGCACGCTCATTTCATGAGTTGGCTTAGGCATACGAAGTTCATTCCATG
66 CGATCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATG
12676609 TCTAA
131 TCTAA
12676614 ACCCCAGTTG
Statistics
Matches: 604, Mismatches: 107, Indels: 21
0.83 0.15 0.03
Matches are distributed among these distances:
194 48 0.08
195 260 0.43
196 134 0.22
197 161 0.27
198 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.23
Consensus pattern (197 bp):
ACAGCAGGATCGACAGCACACAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTC
CGATCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATG
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGAC
CA
Found at i:12677190 original size:155 final size:158
Alignment explanation
Indices: 12676799--12677327 Score: 393
Period size: 155 Copynumber: 3.4 Consensus size: 158
12676789 CAGTCTAAGT
* ** *
12676799 ATACAGAGTTCATTCCAAGTCTAAGATCAGACCAGACCGAGGGTTACAACAGCAGGATCGGTAGC
1 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGACAGCAGGATCGATAGC
* ** * * * * * ***
12676864 ACGCAGGGA-GGACCGGGCCGA-TCC-CTGGCTTGTGCATTCTGCCTATCCGGCCGGTTGAACAC
66 ACGCAGGGAGGGACC-GGCCGAGTCCTC-GACTTGCACATTATGCCTCTCCGACCGGCTCAGTGC
* * * *
12676926 CTGC-AA-GCTTGTTTCATGGGTTGGCTTAGAC
129 C--CAAACGCTCGTTTCGTGGGTTGAC-TAGGC
*** ** * * * * * * *
12676957 ATTGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGT-AGTAGCGGGACCGGT
1 ATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTATGA-CAGCAGGATCGAT
** * * * *
12677019 AGCACAAAGAGG-GGGACTGGACCGA-TCCTCGACTTGCATATTATGCCTCTCTGGCCGGCTCAG
63 AGCACGCAG-GGAGGGACCGG-CCGAGTCCTCGACTTGCACATTATGCCTCTCCGACCGGCTCAG
*
12677082 TGCCCAAACGCTCGTTTTGTGGGTTGAC-AGGC
126 TGCCCAAACGCTCGTTTCGTGGGTTGACTAGGC
* * *
12677114 ATA-AGAGTTCATT-CTAGTCTAAGATC-GAACCAGACCGAGGGTTGTGACTGCAGGATCGATAG
1 ATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTATGACAGCAGGATCGATAG
* * * * *
12677176 CACGCAGGGAGGGACCGGGCTAGTCCTCGACTTGCACATTTTGCCTCTCCGATCGGCTGAGTGCC
65 CACGCAGGGAGGGACCGGCCGAGTCCTCGACTTGCACATTATGCCTCTCCGACCGGCTCAGTGCC
** *
12677241 CGCACGCTCGTTTCGTGGGTTGGCTTAGGC
130 CAAACGCTCGTTTCGTGGGTTGAC-TAGGC
* *
12677271 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTATGACAGCAGGA
1 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGACAGCAGGA
12677328 CTAGCAGCAG
Statistics
Matches: 287, Mismatches: 65, Indels: 37
0.74 0.17 0.10
Matches are distributed among these distances:
153 1 0.00
154 5 0.02
155 99 0.34
156 12 0.04
157 16 0.06
158 60 0.21
159 92 0.32
160 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (158 bp):
ATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGACAGCAGGATCGATAGC
ACGCAGGGAGGGACCGGCCGAGTCCTCGACTTGCACATTATGCCTCTCCGACCGGCTCAGTGCCC
AAACGCTCGTTTCGTGGGTTGACTAGGC
Found at i:12677512 original size:170 final size:170
Alignment explanation
Indices: 12677203--12677624 Score: 442
Period size: 170 Copynumber: 2.5 Consensus size: 170
12677193 GGCTAGTCCT
** * * *
12677203 CGACTTGCACATTTTGCCTCTCCGATCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTA
1 CGACTTGTGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT-GCTTA
* *
12677268 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTATGACAGCAGGACTAGC
65 GGCATACGGAGTTCATTCCCAGTCTAAGACCAGATCAGACCGAGCGTTATGACAGCAGGACTAGC
* * *
12677333 AGCAGGATCGATAGCACGTAG-GAGAGATCAAGTC-GATCCC
130 AGCAGGATCGACAACACGTAGAGAGAGA-CAAGGCTGATCCC
* * * * *
12677373 CGGCTTGTGCATTCTGCCTCTCCGGTAGGTTGAGCGCCCGCACGCTCGTTTTGTGGGTTAGCTTA
1 CGACTTGTGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT-GCTTA
* * * * ** *
12677438 GGCATACGGAGTTCATT-CCATGTCTAAGGCCCAG-TCGGATCGAGCGTTGTGGTAGTAGGACT-
65 GGCATACGGAGTTCATTCCCA-GTCTAA-GACCAGATCAGACCGAGCGTTATGACAGCAGGACTA
* * * *
12677500 GACAGTAGGATCGACAACACGTAGAGGGGGACCAGGCTGATCCC
128 G-CAGCAGGATCGACAACACGTAGAGAGAGACAAGGCTGATCCC
* * * * * *
12677544 CGATTTGTGCATTATGCCTC-ACGTGCCGGCTGAGCGCCCGTACGTTCGTTTCGTTGGTTGACTT
1 CGACTTGTGCATTATGCCTCTCCG-GTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG-CTT
12677608 AGGCATACGGAGTTCAT
64 AGGCATACGGAGTTCAT
12677625 CACCAATCTA
Statistics
Matches: 208, Mismatches: 37, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
169 4 0.02
170 125 0.60
171 79 0.38
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (170 bp):
CGACTTGTGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGACCAGATCAGACCGAGCGTTATGACAGCAGGACTAGCA
GCAGGATCGACAACACGTAGAGAGAGACAAGGCTGATCCC
Found at i:12678120 original size:158 final size:157
Alignment explanation
Indices: 12677642--12678137 Score: 491
Period size: 158 Copynumber: 3.1 Consensus size: 157
12677632 CTAAGTATAT
* * * * *
12677642 GGAGTTCATTCCCAT-TCTAAGATCTGACCGGACTGAAGGTTACGACAGTAGGATCGGTAGCACG
1 GGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGATAGCACG
* * * * * * * * * *
12677706 CAGGGAGGA-CCAGGCTGATCCCCGACTTGTG-CATTCTACCTATCCGGTCGGCTGAGCGCCCGC
65 CAGGGGGGATCGAGCCAG-TCCTCGACTTG-GACATTCTGCCTCTCCGATCGGCTGAGTG-CCGA
* * *
12677769 ACGCCCGTTTCGTGGGTTGGCTTACGCATAG
127 ACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
** * * *
12677800 GGAGTTCATTCCATGTCTAAGCCCTAG-CCGGACCGAGGGTTGTGGCAGTGGGATCGATAGCACG
1 GGAGTTCATTCCATGTCTAAGATC-AGACCGGACCGAGGGTTGCGACAGTAGGATCGATAGCACG
* * * * * * * *
12677864 TAGAGAGGGATCGAGCCAATCCTTGACTT-GAGTATTATGCCTCTCCGACCGGCTCAGTGCCTGA
65 CAG-GGGGGATCGAGCCAGTCCTCGACTTGGA-CATTCTGCCTCTCCGATCGGCTGAGTGCC-GA
* *
12677928 ACGCTCGTTTCGTGGGTTGACTTAGGCATGC
127 ACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* *
12677959 GGAGTTCATTCC-TAGTCTAAGATCAGACCGGACCGAGGGTTGCGACTGTAGGATCGACAGCACG
1 GGAGTTCATTCCAT-GTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGATAGCACG
* * * * *
12678023 CAGGGGGGATCGAGCCAGTCCTCGGCTTGGACATTCTGCTTCTCCGATCGGTTGAGTGCTCGTAT
65 CAGGGGGGATCGAGCCAGTCCTCGACTTGGACATTCTGCCTCTCCGATCGGCTGAGTGC-CGAAC
*
12678088 GCTCATTTCGTGGGTTGGCTTAGGCATAC
129 GCTCGTTTCGTGGGTTGGCTTAGGCATAC
12678117 GGAGTTCATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
12678138 CATATGGAGT
Statistics
Matches: 270, Mismatches: 56, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
157 5 0.02
158 144 0.53
159 117 0.43
160 4 0.01
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.25
Consensus pattern (157 bp):
GGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGATAGCACGC
AGGGGGGATCGAGCCAGTCCTCGACTTGGACATTCTGCCTCTCCGATCGGCTGAGTGCCGAACGC
TCGTTTCGTGGGTTGGCTTAGGCATAC
Found at i:12678147 original size:26 final size:26
Alignment explanation
Indices: 12678111--12678163 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12678101 GTTGGCTTAG
12678111 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12678137 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12678163 G
1 G
12678164 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12678336 original size:26 final size:26
Alignment explanation
Indices: 12678307--12678359 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12678297 GTTGACTTAG
*
12678307 GCATACGGAGTTC-TTCCCCAGTCTAA
1 GCATACGGAGTTCATT-CCCAGCCTAA
12678333 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
12678359 G
1 G
12678360 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:12685436 original size:159 final size:156
Alignment explanation
Indices: 12685126--12685629 Score: 485
Period size: 159 Copynumber: 3.2 Consensus size: 156
12685116 CCCAGTCTAA
** * ** * *
12685126 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAAGATCGGC
1 GCATACAGAGTTCATT-CCATGTCTAAGCCCA-ACCGGACCGAGGGTTACGGTAGCAGGAT-GGC
* * * * * **
12685190 AGCACGCAGGGGGGACCGGGCTGATCCCCAGCTTGCGCACTCTACCTCTCCGGCCGGCTGAGTGC
63 ATCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGATCGGCTGAGTGC
* * *
12685255 CCGTACGCCCGTTTCATAGGTTGGCTTAG
128 CCGAACGCTCGTTTCATGGGTTGGCTTAG
** * * ** *
12685284 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGATCGAGGGTTGTGGTAG-TGGTACTGGC
1 GCATACAGAGTTCATTCCATGTCTAAGCCC-AACCGGACCGAGGGTTACGGTAGCAGG-A-TGGC
* * * * *
12685348 ATCACGCAGAGGGGGATCGAGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGATCGGCTCAGTG
63 ATCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGATCGGCTGAGTG
* *
12685413 CCCGAACGCTCGTTTCGTGGGTTGACTTAG
127 CCCGAACGCTCGTTTCATGGGTTGGCTTAG
* * *
12685443 GCATACAGAGTTCATTCCCA-ATCTAAGATCCAACCGGACCGAGGGTTACGGTAGCAGGATCG-A
1 GCATACAGAGTTCATT-CCATGTCTAAG-CCCAACCGGACCGAGGGTTACGGTAGCAGGATGGCA
** * * * *
12685506 TAGCACATAGTGGGGGATCGGGCCGGTCCTCGGCTTGCGCATTCTACCTCTCCGATCGACTGAGC
64 T--CACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGATCGGCTGAGT
* * *
12685571 GCCCGCATGCTCGTTTTATGGGTTGGCTTAG
126 GCCCGAACGCTCGTTTCATGGGTTGGCTTAG
12685602 GCATACAGAGTTCATTCCATGTCTAAGC
1 GCATACAGAGTTCATTCCATGTCTAAGC
12685630 ATACGGAGTT
Statistics
Matches: 279, Mismatches: 56, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
157 6 0.02
158 57 0.20
159 209 0.75
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCATGTCTAAGCCCAACCGGACCGAGGGTTACGGTAGCAGGATGGCATC
ACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGATCGGCTGAGTGCCCG
AACGCTCGTTTCATGGGTTGGCTTAG
Found at i:12685631 original size:26 final size:26
Alignment explanation
Indices: 12685602--12685654 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12685592 GTTGGCTTAG
12685602 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
12685628 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
12685654 G
1 G
12685655 ATTGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:12686129 original size:159 final size:158
Alignment explanation
Indices: 12685863--12686172 Score: 410
Period size: 159 Copynumber: 2.0 Consensus size: 158
12685853 AGATTGAACT
* * *
12685863 AGACTGAGGGTTGTGGCAGCAGGATCGATAGCACGCAGGGGAGACCGGGTCGATCCTCAGCTTGT
1 AGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGAGACCGGGCCGATCCTCAGCTTGT
* * * * *
12685928 GCATTCTACCTCTCCGACCGGCTCAGCGCCTGCACGCCCGTTTCATGGGTTGGCTTAGGCGTAGG
66 ACATTCTACCTCTCCGACCGGCTCAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATACG
*
12685993 GAGTTCATTCCATTTCTAAGCCCCAGCC
131 GAGTTCATTCCATATCTAAGCCCCAGCC
* * *
12686021 AGACCGAGGGTTGTGGTAGCGGGA-CTGACAGCACGCAGAGGGAGACCGGGCCGATCC-CTGGCT
1 AGACCGAGGGTTGTGGCAGCAGGATC-GACAGCACGCAG-GGGAGACCGGGCCGATCCTC-AGCT
* * * * *
12686084 T-TCACATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCA
63 TGT-ACATTCTACCTCTCCGACCGGCTCAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCA
12686148 TACGGAGTTCATTCCATATCTAAGC
127 TACGGAGTTCATTCCATATCTAAGC
12686173 ATATGAAGTT
Statistics
Matches: 131, Mismatches: 17, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
157 1 0.01
158 34 0.26
159 96 0.73
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.23
Consensus pattern (158 bp):
AGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGAGACCGGGCCGATCCTCAGCTTGT
ACATTCTACCTCTCCGACCGGCTCAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATACG
GAGTTCATTCCATATCTAAGCCCCAGCC
Found at i:12686289 original size:11 final size:11
Alignment explanation
Indices: 12686275--12686300 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
12686265 CACCATCGTT
12686275 GGAGCATCACC
1 GGAGCATCACC
12686286 GGAGCATCACC
1 GGAGCATCACC
12686297 GGAG
1 GGAG
12686301 AGCCTAACCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.31, G:0.35, T:0.08
Consensus pattern (11 bp):
GGAGCATCACC
Found at i:12686916 original size:26 final size:26
Alignment explanation
Indices: 12686880--12686932 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12686870 GTTGGCTTAG
12686880 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
12686906 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12686932 G
1 G
12686933 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12687410 original size:26 final size:25
Alignment explanation
Indices: 12687374--12687425 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
12687364 GTTGGCTTAG
*
12687374 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
12687400 GCATACAGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
12687425 G
1 G
12687426 ATCTGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:12687560 original size:184 final size:185
Alignment explanation
Indices: 12687215--12687585 Score: 451
Period size: 184 Copynumber: 2.0 Consensus size: 185
12687205 GTTGACTTAG
* ** * *
12687215 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGGACTGAGGGTTTTGGCAGCAGGATCGATA
1 GCATACAGAGTTCATTCTCAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCAGGATCGACA
* * * * *
12687280 GCACACAGGGGGGGATCAGACCGGTCCCTGACTTGCGCATTCTACCTCTCCGACCGGCTGAGCAC
66 ACACACAGGAGGGGACCAGACCGATCCCTGACTTGCGCATTCTACCTCTCCGACCGGATGAGCAC
* * **
12687345 TCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CCACACGCTCATTTCGTGGGTTGAATTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
12687400 GCATACAGAGTTCATTC-CAGTCTAAGATCTGACTGGACTGAGGGTTACGACAGCAGGATCGGCA
1 GCATACAGAGTTCATTCTCAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCAGGATCGACA
* * * * * * *
12687464 ACACGCAGGAGGGGACCTGGCCGAT-CCTCGGCTTGTGCATTCTGCCTCTCC-AGTCGGATGAGC
66 ACACACAGGAGGGGACCAGACCGATCCCT-GACTTGCGCATTCTACCTCTCCGA-CCGGATGAGC
** * *
12687527 ACCCGTACGCTCATTTTGTTGGTTGAATTAGGCATACGGAGTTCATTCCATGTCTAA
129 ACCCACACGCTCATTTCGTGGGTTGAATTAGGCATACGGAGTTCATTCCATGTCTAA
12687584 GC
1 GC
12687586 CCCAGCTGGA
Statistics
Matches: 156, Mismatches: 28, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
183 4 0.03
184 136 0.87
185 16 0.10
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (185 bp):
GCATACAGAGTTCATTCTCAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCAGGATCGACA
ACACACAGGAGGGGACCAGACCGATCCCTGACTTGCGCATTCTACCTCTCCGACCGGATGAGCAC
CCACACGCTCATTTCGTGGGTTGAATTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:12688574 original size:159 final size:158
Alignment explanation
Indices: 12688313--12688623 Score: 401
Period size: 159 Copynumber: 2.0 Consensus size: 158
12688303 AAGATCAAAC
* * * **
12688313 CAGACCGAGGGTTACGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCTTGACTTG
1 CAGACCGAGGGTTACGGCAGTAGGATCAACAGCACGCAGGGAGGACCAGGCCGATCCCAGACTTG
* * * *
12688378 CGCATTCTACCTCTCCGATCGACTGAGCGCTCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
66 CACATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTGAGGCATAC
12688443 GGAGTTCATTCCATGTCTAAGCCCCAGT
131 GGAGTTCATTCCATGTCTAAGCCCCAGT
** * * *
12688471 CAGACCGAGGGTTGTGGCAGTGGGATTAACAGCATGCAGAGGAGGACCAGGCCGATCCCCAG-CT
1 CAGACCGAGGGTTACGGCAGTAGGATCAACAGCACGCAG-GGAGGACCAGGCCGAT-CCCAGACT
* * * * *
12688535 TGCACATTCTGCCTCTCCG-GCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTGAGGCA
64 TGCACATTCTACCTCTCCGATC-GACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTGAGGCA
*
12688599 TACGGAGTTTATTCCATGTCTAAGC
128 TACGGAGTTCATTCCATGTCTAAGC
12688624 ATATGGAGTT
Statistics
Matches: 130, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
158 34 0.26
159 93 0.72
160 3 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
CAGACCGAGGGTTACGGCAGTAGGATCAACAGCACGCAGGGAGGACCAGGCCGATCCCAGACTTG
CACATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTGAGGCATAC
GGAGTTCATTCCATGTCTAAGCCCCAGT
Found at i:12689367 original size:26 final size:26
Alignment explanation
Indices: 12689330--12689382 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12689320 GTTGACTTAG
12689330 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
* *
12689356 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
12689382 G
1 G
12689383 ATTGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAGTCTAA
Found at i:12689819 original size:26 final size:26
Alignment explanation
Indices: 12689788--12689840 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12689778 GTTGGCTTAG
12689788 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12689814 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12689840 G
1 G
12689841 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12690575 original size:26 final size:26
Alignment explanation
Indices: 12690545--12690597 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12690535 GTTAACTTAG
12690545 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12690571 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12690597 G
1 G
12690598 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12690927 original size:26 final size:26
Alignment explanation
Indices: 12690888--12690940 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12690878 GTTGGCTGAG
12690888 GCATACGGACTTCATT-CCATGTCTAA
1 GCATACGGACTTCATTCCCA-GTCTAA
*
12690914 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
12690940 G
1 G
12690941 AGTTTTCAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:12691659 original size:26 final size:26
Alignment explanation
Indices: 12691622--12691674 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
12691612 GTTGACTTAG
12691622 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
12691648 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
12691674 G
1 G
12691675 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.80
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12692149 original size:26 final size:26
Alignment explanation
Indices: 12692119--12692174 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
12692109 TGGGTTGGCT
12692119 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
*
12692145 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
12692171 TAAG
1 TAAG
12692175 ATCGGACTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:12692646 original size:526 final size:508
Alignment explanation
Indices: 12691585--12692751 Score: 1258
Period size: 526 Copynumber: 2.3 Consensus size: 508
12691575 CTCTGGTCGG
** * * *
12691585 CTGAGCGTTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCA-TCCCTAGTCTAAG
1 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAG
* * * * *
12691649 CATACAGAGTTCATTCCCAGTCTAAGATCAGAC-CAGACCGAGGGTTGCGCAGTAGGATC-G--G
65 CATACGGAGTTCATTCCCAGTCTAAGATCGGACTGA-AACGAGGGTTGCGCAGTAGGACCAGCAG
*
12691710 CA-G--C-AC-GTAAGGGGGACCGAATCAATCCTCGACTTGCACATTCTACCTCTCCGACCGTTT
129 CAGGATCGACAGTAAGGGGGACCGAATCAATCCTCGACTTGCACATTCTACCTCTCCGACCGTCT
*
12691770 GAACGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCTC
194 GAACGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCC
* *
12691835 CAGCCGGATCGAGGGTTGTGGCAGCCAGACCGACAACATGCAGAGGGGGATCGGGTCGATCCTCG
259 CAGCCGGACCGAGGGTTGTGGCAGCCAGACCGACAACATGCAGAGGGGGATCGGGTCGATCCCCG
* * * *
12691900 GCTTACGCATTATGCCTCTCCGGTTGGCTCAATGCCCGCACACTCATTTCGTGGGTTGACTTAGG
324 GCTTACGCATTATGCCTCTCCGGTTGACTCAATGCCCGAACACTCATTTCATGGGTTGACTCAGG
* * * * * *
12691965 CATACGGAGTTCATTCCCAGTCTAAGATCGAATCAAACCGAGGGTTGTGGTAGCAGGATCGATAG
389 CATACGGAGTTCATTCCCAGTCTAAGATCGAATCAAACCGAAGGTTGCGGCAACAAGATCGACAG
* * * * * * *
12692030 CACGTAGGGGGGAATCGGGCTAGTTCCTAGCTTGCGCATCTGCCTTTCCAGCCGG
454 CACCTAGGGGGGAACCGGGCCAGTCCCTAGCTTACGCATCTGCCTCTCCAGCCGA
* * * * *
12692085 TTGAGCGTCGGCACGCTCATTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGC
1 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * *
12692150 ATATGGAGTTCATTCCCAGTCTAAGATCGGACTGAATCGAGGGTTGCGACAGTAGGACCAGCAAC
66 ATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAAACGAGGGTTGCG-CAGTAGGACCAGCAGC
* ** * *
12692215 AGGATCGACAGTATGCAAGGGGGGATCGGGTCAATCCTCGGCTTGCGCATTCTACCTCTCC-AGC
130 AGGATCGACAG--T--AA-GGGGGACCGAATCAATCCTCGACTTGCACATTCTACCTCTCCGA-C
** * * *
12692279 C-TGCTGAGGGCTCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGG-AGTTCATTCCATGTC
189 CGT-CTGAACGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATA-GGAAGTTCATTCCATGTC
*
12692342 TAAGCCCCAGTCGGACCGAGGGTTGTGGCAG-CAGGACCGATAGTGGGATCGATAGCATGCAGAG
252 TAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCCA-GACC--------GA-C-A-A-CATGCAGAG
* ** * * *
12692406 GGGGATCGGG-CTTATCCCCGGCTTGGGCATTATGCCTCTCTGGTTGACTCAGTGCCCGAACGCT
304 GGGGATCGGGTC-GATCCCCGGCTTACGCATTATGCCTCTCCGGTTGACTCAATGCCCGAACACT
** * * ** *
12692470 TGTTTCATGGGTTGACTCA-GCATACGGTGTTCATTCCCAGTCTAAGATCGGA-CTGGATCGAAG
368 CATTTCATGGGTTGACTCAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAATC-AAACCGAAG
* * *
12692533 GTTGCGGCAACAAGATCGACAGCACACT-GGAGGGG-ACCGGGCCGGTCCCTGGCTTATGCATTC
432 GTTGCGGCAACAAGATCGACAGCAC-CTAGG-GGGGAACCGGGCCAGTCCCTAGCTTACGCA-TC
12692596 TGCCTCTCC-GACCGA
494 TGCCTCTCCAG-CCGA
* *
12692611 CTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * * **
12692676 ATACGGAGTTCATTCCTAGTCTAAGATCGGACTGAAACGAGGGTTACGGTAACAGGACCAGCAGC
66 ATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAAACGAGGGTTGC-GCAGTAGGACCAGCAGC
12692741 AGGATCGACAG
130 AGGATCGACAG
12692752 CACGTAGTTG
Statistics
Matches: 550, Mismatches: 78, Indels: 52
0.81 0.11 0.08
Matches are distributed among these distances:
500 93 0.17
501 14 0.03
502 1 0.00
504 2 0.00
505 1 0.00
507 1 0.00
508 2 0.00
509 1 0.00
511 1 0.00
513 6 0.01
514 122 0.22
515 2 0.00
522 2 0.00
523 1 0.00
524 2 0.00
525 79 0.14
526 219 0.40
527 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (508 bp):
CTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAAACGAGGGTTGCGCAGTAGGACCAGCAGCA
GGATCGACAGTAAGGGGGACCGAATCAATCCTCGACTTGCACATTCTACCTCTCCGACCGTCTGA
ACGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCA
GCCGGACCGAGGGTTGTGGCAGCCAGACCGACAACATGCAGAGGGGGATCGGGTCGATCCCCGGC
TTACGCATTATGCCTCTCCGGTTGACTCAATGCCCGAACACTCATTTCATGGGTTGACTCAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCGAATCAAACCGAAGGTTGCGGCAACAAGATCGACAGCA
CCTAGGGGGGAACCGGGCCAGTCCCTAGCTTACGCATCTGCCTCTCCAGCCGA
Found at i:12692684 original size:26 final size:26
Alignment explanation
Indices: 12692648--12692700 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12692638 GTTGGCTTAG
12692648 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
12692674 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
12692700 G
1 G
12692701 ATCGGACTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:12692887 original size:26 final size:26
Alignment explanation
Indices: 12692856--12692908 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12692846 GTTGACTTAG
*
12692856 GCATACGGTGTACATCCCCAGTCTAA
1 GCATACGGAGTACATCCCCAGTCTAA
* *
12692882 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTACATCCCCAGTCTAA
12692908 G
1 G
12692909 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTACATCCCCAGTCTAA
Found at i:12693231 original size:26 final size:26
Alignment explanation
Indices: 12693201--12693251 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12693191 TGGCTTAGGC
12693201 ATACGGAGTTCATT-CCATGTCTAAGG
1 ATACGGAGTTCATTCCCA-GTCTAAGG
*
12693227 ATACGTAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
12693252 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGG
Found at i:12693960 original size:25 final size:26
Alignment explanation
Indices: 12693925--12693976 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
12693915 GTTGACTTAG
*
12693925 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12693950 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12693976 G
1 G
12693977 ATCAGAATGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12694331 original size:158 final size:159
Alignment explanation
Indices: 12694090--12694451 Score: 361
Period size: 159 Copynumber: 2.3 Consensus size: 159
12694080 TGTACGCCAA
* * * ** **
12694090 TTTCATGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAACTGGATTGAGGGTT
1 TTTCATGGGTTGGCTTAGGTATACGGAGTTCATTCCAGGTCTAAGACCCAACCAGACCGAGGGTT
* * * * * * * * * *
12694155 GTGGCAGCGGGACCGACAGCATGTAGAGGG-GGATAAGCT-GATTCTCGGCTTGCGCATTATGCC
66 GCGGCAACAGGACCGACAGCACGCAG-GGGTGGACAAGCTCGATCCCCGACTTGCGCATTATACC
12694218 TCACCAACCGGCTAAGCGCCCGCACGCTCG
130 TCACCAACCGGCTAAGCGCCCGCACGCTCG
* * **
12694248 TTTCATGGGTTGACTTAGGTATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAGGGT
1 TTTCATGGGTTGGCTTAGGTATACGGAGTTCATT-CCAGGTCTAAGACCCAACCAGACCGAGGGT
** * * * *
12694312 TGCGGCAACAGGATTGACAGCACGCAGGGGTGGACCAGGTCGGTCCCCGACTTGCGCATTCTACC
65 TGCGGCAACAGGACCGACAGCACGCAGGGGTGGACAAGCTCGATCCCCGACTTGCGCATTATACC
* ** * *
12694377 TCTCCGGCCGGCTAAGTGCCCGCACGCTTG
130 TCACCAACCGGCTAAGCGCCCGCACGCTCG
** * *
12694407 TTTTGTGGGTTGGCTTAGGCATATGGAGTTCATTCCAGGTCTAAG
1 TTTCATGGGTTGGCTTAGGTATACGGAGTTCATTCCAGGTCTAAG
12694452 CATACGGAGT
Statistics
Matches: 164, Mismatches: 36, Indels: 7
0.79 0.17 0.03
Matches are distributed among these distances:
157 3 0.02
158 79 0.48
159 82 0.50
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.25
Consensus pattern (159 bp):
TTTCATGGGTTGGCTTAGGTATACGGAGTTCATTCCAGGTCTAAGACCCAACCAGACCGAGGGTT
GCGGCAACAGGACCGACAGCACGCAGGGGTGGACAAGCTCGATCCCCGACTTGCGCATTATACCT
CACCAACCGGCTAAGCGCCCGCACGCTCG
Found at i:12694461 original size:26 final size:26
Alignment explanation
Indices: 12694425--12694477 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12694415 GTTGGCTTAG
*
12694425 GCATATGGAGTTCATT-CCAGGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12694451 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12694477 G
1 G
12694478 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12694854 original size:26 final size:26
Alignment explanation
Indices: 12694809--12694859 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12694799 TGACTTAGGC
*
12694809 ATACGGAGTTCATCTTCAGTCTAAGT
1 ATACGGAGTTCATCTCCAGTCTAAGT
12694835 ATACGGAGTTCAT-TCCCAGTCTAAG
1 ATACGGAGTTCATCT-CCAGTCTAAG
12694860 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATCTCCAGTCTAAGT
Found at i:12695326 original size:26 final size:26
Alignment explanation
Indices: 12695296--12695348 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12695286 GTTGGCTTGG
*
12695296 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12695322 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12695348 G
1 G
12695349 ATTAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12695527 original size:26 final size:26
Alignment explanation
Indices: 12695491--12695543 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12695481 GTTGACTTAG
12695491 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12695517 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12695543 G
1 G
12695544 ATTGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12696062 original size:26 final size:26
Alignment explanation
Indices: 12696032--12696084 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12696022 GTTGACTTAG
* *
12696032 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
12696058 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
12696084 G
1 G
12696085 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:12696927 original size:526 final size:527
Alignment explanation
Indices: 12696006--12696959 Score: 1173
Period size: 526 Copynumber: 1.8 Consensus size: 527
12695996 TGAGCACCCG
*
12696006 CACGCTCGTTTCATGGGTTGACTTAGGCATATGAAGTTCATCCCCAGTCTAAGCATACGAAGTTC
1 CACGCTCATTTCATGGGTTGACTTAGGCATATGAAGTTCATCCCCAGTCTAAGCATACGAAGTTC
*
12696071 ATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGCGACAACAGGATCGGAAGCATACAAGGGGG
66 ATTCCCAATCTAAGATCAGATCGGAACGAGGGTTGCGACAACAGGATCGGAAGCATACAAGGGGG
* *** * *
12696136 ACCAGACCGATCCTCGGCTTGCACATTCTACCTCTCCGGTTGGCTGAGCGCCCGTACACCCGTTT
131 ACCAGACCGATCCTCGGCTTACACATTCTACCTCTCCGACCGACTGAGCGCCCGCACACCCGTTT
* * * *
12696201 CGCGGGTTGGCATAGGCGTAGGGAGTTCATTCAATGTCTAAGCCCCAGCGGAACTGAGGGTTATG
196 CACGGGTTGGCATAGGCATAGGGAGTTCATTCAATGTCTAAGCCCCAGCAGAACCGAGGGTTATG
** * *
12696266 GCAGCGAGACCGACAGCACGTAGAGGGGGATCGAGCCGATCCCCAGCTTGCACATTATGCCTCTT
261 GCAGCGAGACCGACAGCACACAGAGGAGGACCGAGCCGATCCCCAGCTTGCACATTATGCCTCTT
*** * * * *
12696331 CGGTTGGCTCAGTGCCCGAACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTACACG
326 CGGACAGCTCAGCGCCCGAACACTCATTTCATGGGTTGACTGAAGCATACGGAGTTCATTACACG
* ** *
12696396 TCTAAGCCCCAGTCG-ACTGAGGGTTGTGGTAGCAGGACTGGCACCAGGATTGGCAGCACGTAGA
391 TCTAAGACCCAACCGAACCGAGGGTTGTGGTAGCAGGACTGGCACCAGGATTGGCAGCACGTAGA
12696460 GGGGGACTGGGCTGATCCTCAGCTTGTGTATTATGCCTCTTCGATCGGCCTCTTCGGTCGGCTGA
456 GGGGGACTGGGCTGATCCTCAGCTTGTGTATTATGCCTCTTCGATCGGCCTCTTCGGTCGGCTGA
12696525 GCGCCTA
521 GCGCCTA
* * * *
12696532 CACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGTATATGGAGTTC
1 CACGCTCATTTCATGGGTTGACTTAGGCATATGAAGTTCATCCCCAGTCTAAGCATACGAAGTTC
* * * * * * * * * * *
12696597 ATTCCTAGTTTAAGATCAGA-CTGAACTGATGGTTGCGGCAGCAGGATC-TACAGTATGCAGGGG
66 ATTCCCAATCTAAGATCAGATCGGAAC-GAGGGTTGCGACAACAGGATCGGA-AGCATACAAGGG
* * * * * * * *
12696660 GGACCAGGCTGATCCTCGGCTTACGCATTTTGCCTCTCCGACCGACTGAGTGCTCGCACGCCCGT
129 GGACCAGACCGATCCTCGGCTTACACATTCTACCTCTCCGACCGACTGAGCGCCCGCACACCCGT
* * * * * *
12696725 TTCATGGGTTGGCTTAGGCATAGGGATTTCATTCCATGTCTAAGCCCCTGTTAG-ACCGAGGGTT
194 TTCACGGGTTGGCATAGGCATAGGGAGTTCATTCAATGTCTAAGCCCCAG-CAGAACCGAGGGTT
* * * * * * * *
12696789 GTGGCAGCGGGACCGACAGCACACAGAGTAGGACC-AGGCTGGTCCTCGGCTTGCGCATTATGCC
258 ATGGCAGCGAGACCGACAGCACACAGAGGAGGACCGA-GCCGATCCCCAGCTTGCACATTATGCC
* * ** * *
12696853 TCTTCGGACAGTTCAGCGCCCGAACGCTCATTTTGTGGGTTGACTGAAGCATATGGAGTTCATTC
322 TCTTCGGACAGCTCAGCGCCCGAACACTCATTTCATGGGTTGACTGAAGCATACGGAGTTCATTA
* *
12696918 CGA-GTCTAAGATCGAACCGAACCGAGGGTTGTGGTAGCAGGA
387 C-ACGTCTAAGACCCAACCGAACCGAGGGTTGTGGTAGCAGGA
12696960 TCGATAGCAC
Statistics
Matches: 350, Mismatches: 72, Indels: 11
0.81 0.17 0.03
Matches are distributed among these distances:
525 6 0.02
526 321 0.92
527 23 0.07
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (527 bp):
CACGCTCATTTCATGGGTTGACTTAGGCATATGAAGTTCATCCCCAGTCTAAGCATACGAAGTTC
ATTCCCAATCTAAGATCAGATCGGAACGAGGGTTGCGACAACAGGATCGGAAGCATACAAGGGGG
ACCAGACCGATCCTCGGCTTACACATTCTACCTCTCCGACCGACTGAGCGCCCGCACACCCGTTT
CACGGGTTGGCATAGGCATAGGGAGTTCATTCAATGTCTAAGCCCCAGCAGAACCGAGGGTTATG
GCAGCGAGACCGACAGCACACAGAGGAGGACCGAGCCGATCCCCAGCTTGCACATTATGCCTCTT
CGGACAGCTCAGCGCCCGAACACTCATTTCATGGGTTGACTGAAGCATACGGAGTTCATTACACG
TCTAAGACCCAACCGAACCGAGGGTTGTGGTAGCAGGACTGGCACCAGGATTGGCAGCACGTAGA
GGGGGACTGGGCTGATCCTCAGCTTGTGTATTATGCCTCTTCGATCGGCCTCTTCGGTCGGCTGA
GCGCCTA
Found at i:12696949 original size:159 final size:158
Alignment explanation
Indices: 12696779--12697085 Score: 350
Period size: 158 Copynumber: 1.9 Consensus size: 158
12696769 CCCCTGTTAG
* * * * **
12696779 ACCGAGGGTTGTGGCAGCGGGACCGACAGCACACAGAGTAGGACCAG-GCTGGTCCTCGGCTTGC
1 ACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAG-GGAGGACC-GTGCCGGTCCCCAACTTGC
* * * *
12696843 GCATTATGCCTCTTCGG-ACAGTTCAGCGCCCGAACGCTCATTTTGTGGGTTGACTGAAGCATAT
64 ACATTATGCCTCTTCGGTA-AGTTCAGCACCCGAACGCTCATTTCGTGGGTTGACTGAAGCATAC
12696907 GGAGTTCATTCCGA-GTCTAAGATCGAACCGA
128 GGAGTTCATTCC-ATGTCTAAGATCGAACCGA
* * * * *
12696938 ACCGAGGGTTGTGGTAGCAGGATCGATAGCACGCAGGGGGGACCGTGCCGGTCCCCAACTTGCAC
1 ACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAGGGAGGACCGTGCCGGTCCCCAACTTGCAC
* * * * * * * *
12697003 ATTCTGCCTCTTCGGTAGGTTGAGCACCCGTACGCTCGTTTCGTGGGTTGTCTTAGGCATACGGA
66 ATTATGCCTCTTCGGTAAGTTCAGCACCCGAACGCTCATTTCGTGGGTTGACTGAAGCATACGGA
12697068 GTTCATTCCATGTCTAAG
131 GTTCATTCCATGTCTAAG
12697086 CATACGGAGT
Statistics
Matches: 122, Mismatches: 23, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
157 2 0.02
158 88 0.72
159 32 0.26
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
ACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAGGGAGGACCGTGCCGGTCCCCAACTTGCAC
ATTATGCCTCTTCGGTAAGTTCAGCACCCGAACGCTCATTTCGTGGGTTGACTGAAGCATACGGA
GTTCATTCCATGTCTAAGATCGAACCGA
Found at i:12697089 original size:26 final size:26
Alignment explanation
Indices: 12697059--12697111 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12697049 GTTGTCTTAG
12697059 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCGCA-GTCTAA
12697085 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCGCAGTCTAA
12697111 G
1 G
12697112 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCGCAGTCTAA
Found at i:12697287 original size:26 final size:26
Alignment explanation
Indices: 12697256--12697308 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12697246 TTTGACTTAG
12697256 GCATAC-AGAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
* *
12697282 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12697308 G
1 G
12697309 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12697630 original size:25 final size:25
Alignment explanation
Indices: 12697602--12697649 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
12697592 GCTTAGGCAT
*
12697602 ACGGATTTCATTC-CACGTCTAAGCA
1 ACGGAGTTCATTCGCA-GTCTAAGCA
12697627 ACGGAGTTCATTCGCAGTCTAAG
1 ACGGAGTTCATTCGCAGTCTAAG
12697650 AGTTTGAGCC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 19 0.90
26 2 0.10
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
ACGGAGTTCATTCGCAGTCTAAGCA
Found at i:12698854 original size:26 final size:26
Alignment explanation
Indices: 12698803--12698855 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12698793 GTAGGCTTAG
*
12698803 GCATACGGAGTTCATTCCATGCCTAA
1 GCATACGGAGTTCATTCCAAGCCTAA
*
12698829 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGCCTAA
12698855 G
1 G
12698856 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGCCTAA
Found at i:12699733 original size:26 final size:26
Alignment explanation
Indices: 12699683--12699735 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12699673 GTTCGCTTAG
*
12699683 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
12699709 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
12699735 G
1 G
12699736 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:12699842 original size:184 final size:182
Alignment explanation
Indices: 12699525--12700076 Score: 648
Period size: 184 Copynumber: 3.0 Consensus size: 182
12699515 GTTGACTTAG
* *
12699525 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTG-TGGTAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCT-G-CGTAGGATCGAC
* ** ** * * * *
12699589 AGCACGCAGGGGCCACCGGGTCGATCCCCAGCTTGCGCATTCTACCTC-TCCAGTCGACTGAGTG
64 AGCACGTAGGGGGGACTAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCGA-TCGGCTGAGCG
12699653 CCCGCACGCTCGTTTCATGGGTTCGCTTAGGCATACGGAGTTCATTCCATGTCTAA
128 CCCGCACGCTCGTTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAA
* *
12699709 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTGCTGCGTAGGATCGACAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCTGCGTAGGATCGACAG
*
12699774 CACGTAAGGGGGGACTAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTTTGATCGGCTGAGCGCC
66 CACGT-AGGGGGGACTAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCC
* * *
12699839 CGCACGCTTGTTTCATGGGTTGACTTAGGCATATGGAGTTCATACCCA-G-CTAA
130 CGCACGCTCGTTTCATGGGTTG-CTTAGGCATACGGAGTTCAT-TCCATGTCTAA
* * * * * * *
12699892 GCATATGCAGTTCATTCCCAGTCTAAGATTGGATCAGATCGAGGGTTACGGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCTGC-GTAGGATCGACA
* ** * * * * **
12699957 GCACGTAGGGGGGA-TCGACCCAATCCCCGGATTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
65 GCACGTAGGGGGGACTAG-GTCGATCCCCAGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGC
* *
12700021 CCGCACGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
129 CCGCACGCTC-GTTTCATGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAA
12700076 G
1 G
12700077 ACCCATTCGG
Statistics
Matches: 317, Mismatches: 40, Indels: 22
0.84 0.11 0.06
Matches are distributed among these distances:
182 5 0.02
183 150 0.47
184 156 0.49
185 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (182 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCTGCGTAGGATCGACAG
CACGTAGGGGGGACTAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:12699896 original size:25 final size:26
Alignment explanation
Indices: 12699867--12699918 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
12699857 GTTGACTTAG
*
12699867 GCATATGGAGTTCATACCCAG-CTAA
1 GCATATGCAGTTCATACCCAGTCTAA
*
12699892 GCATATGCAGTTCATTCCCAGTCTAA
1 GCATATGCAGTTCATACCCAGTCTAA
12699918 G
1 G
12699919 ATTGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATATGCAGTTCATACCCAGTCTAA
Found at i:12700314 original size:683 final size:688
Alignment explanation
Indices: 12699133--12700841 Score: 2021
Period size: 683 Copynumber: 2.5 Consensus size: 688
12699123 CTCCGACTGG
* * * *
12699133 CCTCTCCGACCAGCTGAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCTGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * * * *
12699198 CCCCAGTCTAAGCATATAGAGTTTATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGCGGTAG
66 -CCCAGTCTAAGCATAT-GAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTT-CGGCAG
* * * * * * * * *
12699263 CAGGATTGGTAGCATGCAGGGGGGACCGGGCCGATCTTCGGCTTGCACATTCTACTTCTTCGGCT
128 -AGGA-TGGCAGCACGCAGGGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCC
* *
12699328 GGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
191 GGCTGAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * * *
12699393 GCCCCAGTCGGATCGATGGTTATGGCAGCGGGACTGGCAGCACGTAGAGTGGGG-CTGGACCGAT
256 G-CCCAGTCGGATCGAGGGTTATGGCAGCGGGACTGGCAGCACGTAGAG-GGGGACCGGGCTGAT
** * ** *
12699457 CCTCGGCTTATGCGTTATGCCTCTCTGACTGACTCAGCACCCGAACGCTCATTTCAGGGTTGACT
319 CCTCGGCTTACACATTATGCCTCTCCAACTGACTCAGCACCCGAACACTCATTTCAGGGTTGACT
*
12699522 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGTAGTAGGATCG
384 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGTAGGATCG
* * *
12699587 ACAGCACGCAGGGGCCACCGGGTCGATCCCCAGCTTGCGCATTCTACCTCTCCAGTCGACTGAGT
449 ACAGCACGCAGGGGCCACCGGGTCGATCCCCAGCTTGCGCATTCTACCTCTCCAGCCGACTAAGC
*
12699652 GCCCGCACGCTCGTTTCATGGGTTCGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGG
514 GCCCGCACGCTCGTTTCATGGGTTCGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCATACGG
** * * *
12699717 AGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGG-T-T-GC-TG-C-GTAG-GATCGACAGC
579 AGTTCATTCCCAATCTAAGATCAAATCAGACCGAGGGTTGTAGCAGGACAGCAGAGATCGACAGC
* *
12699775 ACGTAAGGGGG-GACTAGGTCGATCCCC-AGCTTGCGCATTCTGCCT
644 ACGT-AGGGGGAGACCAGGTCAATCCCCGA-CTTGCGCATTCTGCCT
* * *
12699820 -CT-T-TGATCGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATATGGAGTTCAT
1 CCTCTCTGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
*
12699882 ACCCAG-CTAAGCATATGCAGTTCATTCCCAGTCTAAGATTGGATCAGATCGAGGGTTACGGCAG
66 -CCCAGTCTAAGCATATG-AGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTT-CGGCAG
* * * * * *
12699946 TAGGATCGGCAGCACGTAGGGGGGATCGACCCAATCCCCGGATTGCGCATTCTGCCTCTCCGGCC
128 -AGGAT-GGCAGCACGCAGGGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCC
*
12700011 GGCTGAGCGCCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
191 GGCTGAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* *
12700076 GACCCATTCGGATCGAGGGTTATGGCAGCGGGACTGGCAGCACGCAGAGGGGGACCGGGCTGATC
256 G-CCCAGTCGGATCGAGGGTTATGGCAGCGGGACTGGCAGCACGTAGAGGGGGACCGGGCTGATC
* * *
12700141 CTTGGCTTGCACATTATGCCTCTCCAACTGACTCAGTACCCGAACACTCATTTCATGGGTTGACT
320 CTCGGCTTACACATTATGCCTCTCCAACTGACTCAGCACCCGAACACTCATTTCA-GGGTTGACT
* * * *
12700206 TAGGCATACGGAGTTTATTCCCAGTCTAAGATCGGATCGGCCCGAGGGTTGCGGTAGTAGGATCG
384 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGTAGGATCG
* *** * ** *
12700271 ACAGCACGCAGGAGG-CATCGGG-CGATCCTTGGCTTGTGCATTCTACCTCTCTGGCCGGCTAAG
449 ACAGCACGCAGG-GGCCACCGGGTCGATCCCCAGCTTGCGCATTCTACCTCTCCAGCCGACTAAG
* * * *
12700334 CGCTCGTACGCTCGTTTCGTGGGTTCGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCATATG
513 CGCCCGCACGCTCGTTTCATGGGTTCGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCATACG
* *
12700399 GAGTTCATTCCCAATCTAAGATCAAATTAGACTGAGGGTTACGGTAGCAGGACCAGCAGCAAGAT
578 GAGTTCATTCCCAATCTAAGATCAAATCAGACCGAGGGTT---GTAGCAGGA-CAGCAG--AGAT
* * *
12700464 CGGCAGCATGTAGGGGGAGACCGGGTCAATCCCCGACTTGCGCATTCTGCCT
637 CGACAGCACGTAGGGGGAGACCAGGTCAATCCCCGACTTGCGCATTCTGCCT
* * * * *
12700516 CACCGACCGGCCTCTCTGACCGGCTGAGCACCCACACACTCATTTCATGGGTTGACTCAGGCATA
1 ----------CCTCTCTGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
* * *
12700581 CGGAGTTCATCCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGG
56 CGGAGTTCATCCC-AGTCTAAGCATAT-GAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGG
*
12700646 GTTC--C----GA---CAGCACGCAGGGGGGACCGAGCCGATCCTCAGCTTGCGCATTCTGCCTC
119 GTTCGGCAGAGGATGGCAGCACGCAGGGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTC
*
12700702 TCCGGTCGGCTGAG-ACCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
184 TCCGGCCGGCTGAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
* * * ** * * * *
12700766 TGTCTAAGCCCTAGTCAGACCGAGGGTTGTGGCAATGGGACCGGTAGCACATAGAGGGGGATCGG
249 TGTCTAAGCCC-AGTCGGATCGAGGGTTATGGCAGCGGGACTGGCAGCACGTAGAGGGGGACCGG
*
12700831 GCTAATCCTCG
313 GCTGATCCTCG
12700842 ACTTGTGCAT
Statistics
Matches: 868, Mismatches: 117, Indels: 64
0.83 0.11 0.06
Matches are distributed among these distances:
682 6 0.01
683 381 0.44
684 145 0.17
685 3 0.00
686 2 0.00
688 1 0.00
689 2 0.00
690 1 0.00
692 1 0.00
693 3 0.00
695 6 0.01
696 44 0.05
697 109 0.13
698 55 0.06
702 2 0.00
707 3 0.00
708 4 0.00
709 54 0.06
710 45 0.05
711 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (688 bp):
CCTCTCTGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
CCCAGTCTAAGCATATGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTCGGCAGAGG
ATGGCAGCACGCAGGGGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTG
AGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCA
GTCGGATCGAGGGTTATGGCAGCGGGACTGGCAGCACGTAGAGGGGGACCGGGCTGATCCTCGGC
TTACACATTATGCCTCTCCAACTGACTCAGCACCCGAACACTCATTTCAGGGTTGACTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGTAGGATCGACAGCAC
GCAGGGGCCACCGGGTCGATCCCCAGCTTGCGCATTCTACCTCTCCAGCCGACTAAGCGCCCGCA
CGCTCGTTTCATGGGTTCGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCATACGGAGTTCAT
TCCCAATCTAAGATCAAATCAGACCGAGGGTTGTAGCAGGACAGCAGAGATCGACAGCACGTAGG
GGGAGACCAGGTCAATCCCCGACTTGCGCATTCTGCCT
Found at i:12700606 original size:26 final size:26
Alignment explanation
Indices: 12700576--12700628 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12700566 GTTGACTCAG
12700576 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
12700602 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12700628 G
1 G
12700629 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12700943 original size:26 final size:26
Alignment explanation
Indices: 12700906--12700958 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12700896 GTTGGCTTAG
*
12700906 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
12700932 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
12700958 G
1 G
12700959 AGTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:12701743 original size:26 final size:26
Alignment explanation
Indices: 12701713--12701791 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
12701703 GTTGGCTTAG
12701713 GCATACGGAGTTCATTCCACGTCTAA
1 GCATACGGAGTTCATTCCACGTCTAA
*
12701739 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCACGTCTAA
*
12701765 GCATACAGAGTTCATTCC-CAGTCTAA
1 GCATACGGAGTTCATTCCAC-GTCTAA
12701791 G
1 G
12701792 ATCGAACTAG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCACGTCTAA
Found at i:12702516 original size:26 final size:27
Alignment explanation
Indices: 12702481--12702535 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
12702471 CGTGGGTTGA
*
12702481 CTTAGGCATACGAAGTTTCTCCCCAGT
1 CTTAGGCATACGAAGTTTATCCCCAGT
*
12702508 CTTA-GCATACGAAGTTTATTCCCAGT
1 CTTAGGCATACGAAGTTTATCCCCAGT
12702534 CT
1 CT
12702536 GAGATCGGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.24, C:0.27, G:0.16, T:0.33
Consensus pattern (27 bp):
CTTAGGCATACGAAGTTTATCCCCAGT
Done.