Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 87 of 402
Found at i:12702800 original size:159 final size:159
Alignment explanation
Indices: 12702592--12703643 Score: 717
Period size: 159 Copynumber: 6.7 Consensus size: 159
12702582 AATGGAGGAT
* * *
12702592 CGGGCTGATCCCTGGA-TTGCGCATTCTACCTCTCCGACTGGCTGAGCGCCCGCACG-TCCGTTT
1 CGGGCCGATCCCT-GACTTGCGCATTCTGCCTCTCCGACTAGCTGAGCGCCCGCACGCT-CGTTT
* *
12702655 CATGGGTTGGCTTAGGCATAGGGGGTTCATTCCATGTCTAAGCTCCAACCGGACCGAGGGTTGTG
64 CATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTCCAACCGGACCGAGGGTTGTG
* * * *
12702720 GTAGCAGGACCAACAGCATGCAGAGGGGGAC
129 GCAGCAGGACCGATAGCACGCAGAGGGGGAC
* * ** * *
12702751 CGGGCCGATCCCTGACTTACGCATTATGCCTCTCCGACTTTCTCAGCGCCCGTACGCTCGTTTCA
1 CGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACTAGCTGAGCGCCCGCACGCTCGTTTCA
* * * * * *
12702816 TGGGTTGACTTGGGCATACAGAGTTCATTCCCA-GTCTAAGAT-CAGACCAGACCGAGGATTGTG
66 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCTCCA-ACCGGACCGAGGGTTGTG
* *
12702879 ACAGCAGGATCGATAGCACGCA-AGGGGGAC
129 GCAGCAGGACCGATAGCACGCAGAGGGGGAC
** ** * * * * * ** **
12702909 CGGATC-AGTCCCCAACTTACACATTCTACCTCTCCG-GTCAGCTTAG-G--CATACG-AAG-TT
1 CGGGCCGA-TCCCTGACTTGCGCATTCTGCCTCTCCGACT-AGCTGAGCGCCCGCACGCTCGTTT
**** * * * * * *
12702967 CATTCCAT-GCCTAAGCATACAGAGTTCATTCCCA-GTCTAAGAT-CAGACTGGACTGAGGGTTG
64 CATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCTCCA-ACCGGACCGAGGGTTG
** * * * * *
12703029 CAGTAGCAGGATCGGTAGCACGTAG-GGGGGAT
127 TGGCAGCAGGACCGATAGCACGCAGAGGGGGAC
** * * * * * **
12703061 CGGGTTGAT-CCTCGGCTTGCACATTCCGCCTCTCCAACT-GGTCGAATGCCCGCACGCTCGTTT
1 CGGGCCGATCCCT-GACTTGCGCATTCTGCCTCTCCGACTAGCT-GAGCGCCCGCACGCTCGTTT
* * * *
12703124 CATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTG
64 CATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTCCAACCGGACCGAGGGTTGTG
* * *
12703189 GCAGCAGGACCGATAGCACACAGAGGGAGAT
129 GCAGCAGGACCGATAGCACGCAGAGGGGGAC
* * * * * * * * **
12703220 CGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGTGCCCGCATGCTCGTTTTG
1 CGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACTAGCTGAGCGCCCGCACGCTCGTTTCA
* * * * * ** * *
12703285 TGGGTTGACTTAGGCATACGGTGTTCATTCCCA-ATCTAAGATCAAACCAAACTGAGGGTTGCGG
66 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCTCCAACCGGACCGAGGGTTGTGG
* * * * **
12703349 TAGCAGGATCGATAGCATGTAGAGGTAGAC
130 CAGCAGGACCGATAGCACGCAGAGGGGGAC
* * * * * * * * * * *
12703379 CGGGCCAATCCCCGACTTACGCATTCTGTCTCTCCGACCAACTGAGCACCCGCATGCCCATTTCG
1 CGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACTAGCTGAGCGCCCGCACGCTCGTTTCA
* * * *
12703444 TGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCTCCAGCCGGACCGAGGGTTATGGC
66 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTCCAACCGGACCGAGGGTTGTGGC
* *
12703509 AGCGGGACC-AGCAGCACGCAGAGGGGGAC
131 AGCAGGACCGA-TAGCACGCAGAGGGGGAC
* * * * * * * * *
12703538 CGAGCCAAT-CCTCGACTTGTGCATTATGCCTCTCC-AGCCAGCTTAACGCCCTCAGGCTCGTTT
1 CGGGCCGATCCCT-GACTTGCGCATTCTGCCTCTCCGA-CTAGCTGAGCGCCCGCACGCTCGTTT
* * *
12703601 CATAGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGC
64 CATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12703644 ATACGGAGTT
Statistics
Matches: 682, Mismatches: 184, Indels: 54
0.74 0.20 0.06
Matches are distributed among these distances:
151 4 0.01
152 93 0.14
153 9 0.01
154 1 0.00
155 9 0.01
156 1 0.00
157 12 0.02
158 105 0.15
159 437 0.64
160 11 0.02
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (159 bp):
CGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACTAGCTGAGCGCCCGCACGCTCGTTTCA
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTCCAACCGGACCGAGGGTTGTGGC
AGCAGGACCGATAGCACGCAGAGGGGGAC
Found at i:12703359 original size:469 final size:469
Alignment explanation
Indices: 12702481--12703365 Score: 1154
Period size: 469 Copynumber: 1.9 Consensus size: 469
12702471 CGTGGGTTGA
* * * * * *
12702481 CTTAGGCATACGAAGTTTCTCCCCAGTCTTAGCATACGAAGTTTATTCCCAGTCTGAGATCGGAT
1 CTTAGGCATACGAAGTTTCTCCCCAGCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGAC
* *
12702546 TGGACCGAAGGTTGCGATAGTAGGATCGACAGCACGAATGGAGGATCGGGCTGATCCCTGGATTG
66 TGGACCGAAGGTTGCGATAGCAGGATCGACAGCACGAAGGGAGGATCGGGCTGATCCCTGGATTG
* * * *
12702611 CGCATTCTACCTCTCCGACTGGCTGAGCGCCCGCACGTCCGTTTCATGGGTTGGCTTAGGCATAG
131 CACATTCCACCTCTCCAACTGGCTGAACGCCCGCACGTCCGTTTCATGGGTTGGCTTAGGCATAG
* * * * **
12702676 GGGGTTCATTCCATGTCTAAGCTCCAACCGGACCGAGGGTTGTGGTAGCAGGACCAACAGCATGC
196 GGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAGCAGGACCAACAGCACAC
* * ** *
12702741 AGAGGGGGACCGGGCCGATCCCTGACTTACGCATTATGCCTCTCCGACTTTCTCAGCGCCCGTAC
261 AGAGGGAGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACTGGCTCAGCGCCCGCAC
* * * *
12702806 GCTCGTTTCATGGGTTGACTTGGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
326 GCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAAACCAAACCGA
*
12702871 GGATTGTGACAGCAGGATCGATAGCACGCAAGGGGGACCGGATCAGTCCCCAACTTACACATTCT
391 GGATTGCGACAGCAGGATCGATAGCACGCAAGGGGGACCGGATCAGTCCCCAACTTACACATTCT
12702936 ACCTCTCCGGTCAG
456 ACCTCTCCGGTCAG
*
12702950 CTTAGGCATACGAAG-TTCAT-TCCATGCCTAAGCATAC-AGAGTTCATTCCCAGTCTAAGATCA
1 CTTAGGCATACGAAGTTTC-TCCCCA-GCCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCA
* * ** * * *
12703012 GACTGGACTGAGGGTTGC-AGTAGCAGGATCGGTAGCACGTAGGGGGGATCGGGTTGAT-CCTCG
63 GACTGGACCGAAGGTTGCGA-TAGCAGGATCGACAGCACGAAGGGAGGATCGGGCTGATCCCT-G
* * * *
12703075 GCTTGCACATTCCGCCTCTCCAACTGG-TCGAATGCCCGCACG-CTCGTTTCATGGGTTGGCTTG
126 GATTGCACATTCCACCTCTCCAACTGGCT-GAACGCCCGCACGTC-CGTTTCATGGGTTGGCTTA
* *
12703138 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAGCAGGACCGAT
189 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAGCAGGACCAAC
* * * * *
12703203 AGCACACAGAGGGAGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGTG
254 AGCACACAGAGGGAGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACTGGCTCAGCG
* ** * *
12703268 CCCGCATGCTCGTTTTGTGGGTTGACTTAGGCATACGGTGTTCATTCCCAATCTAAGATCAAACC
319 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAAACC
* * **
12703333 AAACTGAGGGTTGCGGTAGCAGGATCGATAGCA
384 AAACCGAGGATTGCGACAGCAGGATCGATAGCA
12703366 TGTAGAGGTA
Statistics
Matches: 353, Mismatches: 56, Indels: 14
0.83 0.13 0.03
Matches are distributed among these distances:
468 13 0.04
469 340 0.96
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (469 bp):
CTTAGGCATACGAAGTTTCTCCCCAGCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGAC
TGGACCGAAGGTTGCGATAGCAGGATCGACAGCACGAAGGGAGGATCGGGCTGATCCCTGGATTG
CACATTCCACCTCTCCAACTGGCTGAACGCCCGCACGTCCGTTTCATGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAGCAGGACCAACAGCACAC
AGAGGGAGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGACTGGCTCAGCGCCCGCAC
GCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAAACCAAACCGA
GGATTGCGACAGCAGGATCGATAGCACGCAAGGGGGACCGGATCAGTCCCCAACTTACACATTCT
ACCTCTCCGGTCAG
Found at i:12703666 original size:26 final size:26
Alignment explanation
Indices: 12703616--12703668 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12703606 GTTGACTTAG
**
12703616 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCACATCTAA
* *
12703642 GCATACGGAGTTCATTCCCCATCTAA
1 GCATACGAAGTTCATTCCACATCTAA
12703668 G
1 G
12703669 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCACATCTAA
Found at i:12704389 original size:195 final size:196
Alignment explanation
Indices: 12703946--12704415 Score: 615
Period size: 196 Copynumber: 2.4 Consensus size: 196
12703936 TCTCCGACCG
* * *
12703946 GCCTCTCTGATCGGCTGAGCGCTCGCACACTCGTTTCATGGGTTGGCTTAGGTATACGGAGTTCA
1 GCCTCTCTGATCGGTTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
* * *
12704011 TTCCATGCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCCACA
66 TTCCATGTCTAAGCATACGAAGTTCACTCCCAATCTAAGATCAGACCGAACTGAGGGTTGCCACA
** * *
12704076 GTAAGACCAACAGCAGGATCGGTAGCACGTAGGGAGGATCAAGCCGATCCTCAGCTTGCACATTC
131 GTAAGACCAACAGCAGGATCGACAGCACGTAGGGAGGATCAAGCCAATCCGCAGCTTGCACATTC
12704141 T
196 T
* * * * * *
12704142 GCCTCTCCGGTCGGTTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
1 GCCTCTCTGATCGGTTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
* * **
12704207 TTCCATGTCTAAGCATATGGAGTTCACTCCCAATCTAAGATC-GAACC-AGACTGAGGGTTGCGG
66 TTCCATGTCTAAGCATACGAAGTTCACTCCCAATCTAAGATCAG-ACCGA-ACTGAGGGTTGCCA
* * ** * *
12704270 CAGTAGGACCAGCA-CAGGATCGACAGCACGTAAGGG-GGATCGGGCCAATCCGCGGCTTGCGCA
129 CAGTAAGACCAACAGCAGGATCGACAGCACGT-AGGGAGGATCAAGCCAATCCGCAGCTTGCACA
12704333 TTCT
193 TTCT
* * * *
12704337 GCCTCTCTGATCGGTTGAGGGCCCACACACTCGTTTCATGGGTTGGCTTAGGCATACGAAGCTCA
1 GCCTCTCTGATCGGTTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
12704402 TTCCATGTCTAAGC
66 TTCCATGTCTAAGC
12704416 CCCAGCCGGA
Statistics
Matches: 235, Mismatches: 36, Indels: 7
0.85 0.13 0.03
Matches are distributed among these distances:
195 111 0.47
196 124 0.53
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.23
Consensus pattern (196 bp):
GCCTCTCTGATCGGTTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
TTCCATGTCTAAGCATACGAAGTTCACTCCCAATCTAAGATCAGACCGAACTGAGGGTTGCCACA
GTAAGACCAACAGCAGGATCGACAGCACGTAGGGAGGATCAAGCCAATCCGCAGCTTGCACATTC
T
Found at i:12705068 original size:26 final size:26
Alignment explanation
Indices: 12705019--12705069 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12705009 TGGCTTAGAT
*
12705019 ATACGGAGTTCATTCCATGTCTAAGC
1 ATACGGAGTTCATTCCATGCCTAAGC
12705045 ATACGGAGTTCATTCCCA-GCCTAAG
1 ATACGGAGTTCATT-CCATGCCTAAG
12705070 ATTTTGAACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATGCCTAAGC
Found at i:12710924 original size:158 final size:157
Alignment explanation
Indices: 12710471--12710956 Score: 482
Period size: 158 Copynumber: 3.1 Consensus size: 157
12710461 TAAGCACACA
*
12710471 GAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACAG-
1 GAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTT-CGGCAGCAGGATCGGCAGCAC-GC
* * * * * * *
12710535 AGAAGGGACCGGGCCAATCCCAGGCTTGCACATTCTGCCT-GTCTGACCAGCCAAGCGCCCGCAT
64 AGGAGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTC-GACCGGTCAAGCGCCCGCAT
* * * *
12710599 GCCCATTTCGTGGGTTGGCTTAGGCATAAG
128 GCTCGTTTCATGGGTTGGCTTAGGCATACG
* * ** * * *
12710629 GAGTTCATT-CGATGTCTAAGCCCCAG-CCAGACCAAGGGTTCTGGCAGCGGGA-CTGGCAGCAC
1 GAGTTCATTCCCA-ATCTAAG-ATCAGACCGGACCGAGGGTTC-GGCAGCAGGATC-GGCAGCAC
* * * * * * * *
12710691 ACAGAGGGGGACCAGGCCGAT-CCTCGACTTGCGCATTATACCTCTTCTACCGGCTC-ATCGCCC
62 GCAG-GAGGGACCGGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTTCGACCGG-TCAAGCGCCC
* *
12710754 GTATGCTCGTTTCATGGGTTGACTTAGGCATACG
124 GCATGCTCGTTTCATGGGTTGGCTTAGGCATACG
** ** * *
12710788 GAGTTCATTCCCAATCTAAGATTGGACCGGACCGAGCATTGCGACAGCAGGATCGACAGCACGCA
1 GAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTT-CGGCAGCAGGATCGGCAGCACGCA
* * *
12710853 GGAGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGGTCAAGCACCCGCACGC
65 GGAGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGGTCAAGCGCCCGCATGC
12710918 TCGTTTCATGGGTTGGCTTAGGCATACG
130 TCGTTTCATGGGTTGGCTTAGGCATACG
12710946 GAGTTCATTCC
1 GAGTTCATTCC
12710957 TTTTCTAAGC
Statistics
Matches: 258, Mismatches: 55, Indels: 30
0.75 0.16 0.09
Matches are distributed among these distances:
157 6 0.02
158 132 0.51
159 113 0.44
160 7 0.03
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.21
Consensus pattern (157 bp):
GAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTCGGCAGCAGGATCGGCAGCACGCAG
GAGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGGTCAAGCGCCCGCATGCT
CGTTTCATGGGTTGGCTTAGGCATACG
Found at i:12710989 original size:26 final size:26
Alignment explanation
Indices: 12710939--12710991 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12710929 GTTGGCTTAG
***
12710939 GCATACGGAGTTCATTCCTTTTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
12710965 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12710991 G
1 G
12710992 AATGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12711171 original size:26 final size:26
Alignment explanation
Indices: 12711135--12711187 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12711125 GTTGGCTTAG
*
12711135 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
12711161 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
12711187 G
1 G
12711188 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:12711185 original size:196 final size:195
Alignment explanation
Indices: 12710836--12711357 Score: 685
Period size: 196 Copynumber: 2.7 Consensus size: 195
12710826 TTGCGACAGC
* * *
12710836 AGGATCGACAGCACGCAGGAGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCG
1 AGGATCGACAGCACGCAGG-GGGGTCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCG
* * * *
12710901 G-TCAAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTTTTCTAA
65 GCT-GAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
12710965 GCATACGGAGTTTATTCCCAGTCTAAGAAT-GGA-CTGGACCGAGGGTTGCGA-CAGCAGGACCA
129 GCATACAGAGTTCATTCCCAGTCTAAG-ATCGGATC-GGACCGAGGGTTG-GAGCAACAGGACCA
* *
12711027 GTAGT
191 GCAAT
* * *
12711032 AGGATCGACAGCACGCAAGGGGGGTCAGGCCGATCCCCGGATTGCGCATTCTGCCTCTCCGGCCG
1 AGGATCGACAGCACGC-AGGGGGGTCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCG
*
12711097 GCTGAGCACCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
65 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * *
12711162 CATACAGAGTTCATTCTCAGTCTAAGATCGGATCGGATCGAGGGTTGTAGCAACAGGACCAGCAA
130 CATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGGAGCAACAGGACCAGCAA
12711227 T
195 T
* * * * * *
12711228 AGGATCAATAGCACGCAGGGGGGACCGGGCCGATCCTCGGCTTACACATTCTGCCTCTCCGACCG
1 AGGATCGACAGCACGCAGGGGGG-TCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCG
* * * *
12711293 ACTGAGCACCCGCACGCTCG-TTCGTCGGTTAGCTTAGGCATACGAAGTTCATTCCATGTCTAAG
65 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
12711357 C
130 C
12711358 CCCAGTCGGA
Statistics
Matches: 287, Mismatches: 33, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
195 51 0.18
196 231 0.80
197 5 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (195 bp):
AGGATCGACAGCACGCAGGGGGGTCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGG
CTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGGAGCAACAGGACCAGCAAT
Found at i:12711871 original size:159 final size:158
Alignment explanation
Indices: 12711609--12712175 Score: 550
Period size: 159 Copynumber: 3.6 Consensus size: 158
12711599 CCGATCCCTA
* *
12711609 GCTTGCGCATTCTGCGTCTCCAGCCGGCTGAGTGCCCTGCACGCCCGTTTCGTGGGTTGGCTTAG
1 GCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCC-GCACGCCCGTTTCGTGGGTTGGCTTAG
* * * ** * *
12711674 TCATAGGGAGTTCATTCCATGTCTAAGCCACAGTCAGACCGAAGGTTGTGGCAGCGGGATTGGCA
65 GCATACGGAGTTCATTCCACGTCTAAGCCACAACCAGACCGAGGGTTGTGGCAGCGGGATCGGCA
*
12711739 GCACGCCGGGGGGAATCGGGCTGATCCTCG
130 GCACGCCGGGGGG-ATCGGGCTGATCCCCG
* * * *
12711769 GCTTGCGCATTCTGCCTTTCCAGCCGTCTGAGTGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGG
1 GCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGG
* * * * * * * *
12711834 CATAGGGAGTTTATTCCACGCCTAAGCCCCAACCAGACCGAGGGTTATGGCAGTGGGACCAGCAG
66 CATACGGAGTTCATTCCACGTCTAAGCCACAACCAGACCGAGGGTTGTGGCAGCGGGATCGGCAG
* * * *
12711899 CACGCAGAGGGGGACCAGGCCGATCCCCG
131 CACGCCG-GGGGGATCGGGCTGATCCCCG
* * * * * * * * * *
12711928 GCTTGCGCATTATGCCTCTTCGGCTGGCTCAGCGCCTGCACGCTCGTTTTGTGGGTTGACTTATG
1 GCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGG
* * ** ** *
12711993 CATACGGAGTTCATTCTCA-GTCTAAG--ATCAGACCGGACTGAGGGTTGCAGCAGCAAGATCGA
66 CATACGGAGTTCATTC-CACGTCTAAGCCA-CA-ACCAGACCGAGGGTTGTGGCAGCGGGATCGG
* *
12712055 CAGCAC-AC-AGGGGATCGGGCTGATCCCCG
128 CAGCACGCCGGGGGGATCGGGCTGATCCCCG
* ** * * * * * * *
12712084 GCTTGCACATTCTGCCTCTCTGGCTGGCTGAGCACCCGTACGCTCGTTTTGTAGGTTGGCTTCGG
1 GCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGG
12712149 CATACGGAGTTCATTCCACGTCTAAGC
66 CATACGGAGTTCATTCCACGTCTAAGC
12712176 ATACGAAGTT
Statistics
Matches: 332, Mismatches: 69, Indels: 15
0.80 0.17 0.04
Matches are distributed among these distances:
155 2 0.01
156 93 0.28
158 2 0.01
159 194 0.58
160 41 0.12
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.24
Consensus pattern (158 bp):
GCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGG
CATACGGAGTTCATTCCACGTCTAAGCCACAACCAGACCGAGGGTTGTGGCAGCGGGATCGGCAG
CACGCCGGGGGGATCGGGCTGATCCCCG
Found at i:12712167 original size:315 final size:317
Alignment explanation
Indices: 12711578--12712175 Score: 715
Period size: 315 Copynumber: 1.9 Consensus size: 317
12711568 AGGGTTACGA
* * * * * *
12711578 CAGCATGCAAGGGGGACCAGGCCGATCCCTAGCTTGCGCATTCTGCGTCTCCAGCCGGCTGAGTG
1 CAGCACGCAAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCAGCCGGCTCAGCG
* * *
12711643 CCCTGCACGCCCGTTTCGTGGGTTGGCTTAGTCATAGGGAGTTCATTCCATGTCTAAGCCACAGT
66 CCCTGCACGCCCGTTTCGTGGGTTGACTTAGTCATACGGAGTTCATTCCATGTCTAAG-CACAGC
** ** * * * * *
12711708 CAGACCGAAGGTTGTGGCAGCGGGATTGGCAGCACGCCGGGGGGAATCGGGCTGATCCTCGGCTT
130 CAGACCGAAGGTTGCAGCAGCAAGATCGACAGCACGACGAGGGGAATCGGGCTGATCCCCGGCTT
* * * ** *
12711773 GCGCATTCTGCCTTTCCAGCCGTCTGAGTGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATA
195 GCACATTCTGCCTCTCCAGCCGGCTGAGCACCCGTACGCCCGTTTCGTAGGTTGGCTTAGGCATA
* *
12711838 GGGAGTTTATTCCACGCCTAAGCCCCAACCAGACCGAGGGTTATGGCAGTGGGACCAG
260 CGGAGTTCATTCCACGCCTAAGCCCCAACCAGACCGAGGGTTATGGCAGTGGGACCAG
* * * *
12711896 CAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCTGGCTCAGC
1 CAGCACGCA-AGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCAGCCGGCTCAGC
* *
12711961 G-CCTGCACGCTCGTTTTGTGGGTTGACTTA-TGCATACGGAGTTCATTCTCA-GTCTAAG-ATC
65 GCCCTGCACGCCCGTTTCGTGGGTTGACTTAGT-CATACGGAGTTCATTC-CATGTCTAAGCA-C
* * *
12712022 AGACCGGACTGAGGGTTGCAGCAGCAAGATCGACAGCAC-AC-AGGGG-ATCGGGCTGATCCCCG
127 AG-CCAGACCGAAGGTTGCAGCAGCAAGATCGACAGCACGACGAGGGGAATCGGGCTGATCCCCG
** * * * *
12712084 GCTTGCACATTCTGCCTCTCTGGCTGGCTGAGCACCCGTACGCTCGTTTTGTAGGTTGGCTTCGG
191 GCTTGCACATTCTGCCTCTCCAGCCGGCTGAGCACCCGTACGCCCGTTTCGTAGGTTGGCTTAGG
*
12712149 CATACGGAGTTCATTCCACGTCTAAGC
256 CATACGGAGTTCATTCCACGCCTAAGC
12712176 ATACGAAGTT
Statistics
Matches: 233, Mismatches: 42, Indels: 13
0.81 0.15 0.05
Matches are distributed among these distances:
315 92 0.39
316 5 0.02
317 5 0.02
318 82 0.35
319 49 0.21
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.23
Consensus pattern (317 bp):
CAGCACGCAAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCAGCCGGCTCAGCG
CCCTGCACGCCCGTTTCGTGGGTTGACTTAGTCATACGGAGTTCATTCCATGTCTAAGCACAGCC
AGACCGAAGGTTGCAGCAGCAAGATCGACAGCACGACGAGGGGAATCGGGCTGATCCCCGGCTTG
CACATTCTGCCTCTCCAGCCGGCTGAGCACCCGTACGCCCGTTTCGTAGGTTGGCTTAGGCATAC
GGAGTTCATTCCACGCCTAAGCCCCAACCAGACCGAGGGTTATGGCAGTGGGACCAG
Found at i:12712177 original size:26 final size:26
Alignment explanation
Indices: 12712148--12712200 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12712138 GTTGGCTTCG
*
12712148 GCATACGGAGTTCATT-CCACGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
12712174 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12712200 G
1 G
12712201 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12713368 original size:157 final size:155
Alignment explanation
Indices: 12712903--12713395 Score: 492
Period size: 159 Copynumber: 3.1 Consensus size: 155
12712893 AAGCATATGA
* * * *
12712903 AGTTCATTCC-CAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCA
1 AGTTCATTCCAC-GTCTAAGATCAGACCGGA-CGAGGGTTGTGGTAGTAGGATCGACAGCACGCA
* * * *
12712967 GGGGGGACCGGGCCTATCCCCAGCTTGCGTATTCTGCCTTTTTGG-TCGGTTGAGCGCCTGCACG
64 GGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTATTCGGCT-GGTTGAGCGCC-GCACG
* * *
12713031 CCCATTTCGTTGGTTGGCTTAGGCGTAGGG
127 CTCATTTCG-TGGTTGGCTTAGGCATACGG
* * ** * * * * *
12713061 AGTCCATTCCATGTCTAAGCCCTAG-TCAGACTGAGGGTTGTGGCAGTGGGACCGACAGCACGCA
1 AGTTCATTCCACGTCTAAGATC-AGACCGGAC-GAGGGTTGTGGTAGTAGGATCGACAGCACGCA
* * * ** * *
12713125 GAGGGGGACCGGGCCGATCCCCCGCTTGCGCATTATGCCTATCCAACTGGCTCAGCGCCCGCACG
64 G-GGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTATTCGGCTGGTTGAGCG-CCGCACG
* *
12713190 CTCATTTCGTGTGTTGACTTAGTCATACGG
127 CTCATTTCGTG-GTTGGCTTAGGCATACGG
* * *
12713220 AGTTCATTCCTA-GTCTAAGATCAGACCGGATCGATGGTTGTGATAGTAGGATCGACAGAACGCA
1 AGTTCATTCC-ACGTCTAAGATCAGACCGGA-CGAGGGTTGTGGTAGTAGGATCGACAGCACGCA
* * *
12713284 GGGGGGACCGGGCC-ATCCTCGGCTTGCGCATTCTGCCTCTTCGGCTGGTTGAGCGCTCGCACGC
64 GGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTATTCGGCTGGTTGAGCGC-CGCACGC
*
12713348 TCGTTTCGTAGGTTGGCTTAGGCATACGG
128 TCATTTCGT-GGTTGGCTTAGGCATACGG
*
12713377 AGTTCGTTCCACGTCTAAG
1 AGTTCATTCCACGTCTAAG
12713396 CATACGGAGT
Statistics
Matches: 269, Mismatches: 53, Indels: 27
0.77 0.15 0.08
Matches are distributed among these distances:
156 2 0.01
157 80 0.30
158 64 0.24
159 118 0.44
160 5 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (155 bp):
AGTTCATTCCACGTCTAAGATCAGACCGGACGAGGGTTGTGGTAGTAGGATCGACAGCACGCAGG
GGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTATTCGGCTGGTTGAGCGCCGCACGCTCA
TTTCGTGGTTGGCTTAGGCATACGG
Found at i:12713399 original size:26 final size:26
Alignment explanation
Indices: 12713369--12713421 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12713359 GTTGGCTTAG
*
12713369 GCATACGGAGTTCGTT-CCACGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12713395 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12713421 G
1 G
12713422 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12714789 original size:26 final size:26
Alignment explanation
Indices: 12714759--12714811 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12714749 GCTGGCTTAG
*
12714759 GCATATAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12714785 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12714811 G
1 G
12714812 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12715533 original size:26 final size:26
Alignment explanation
Indices: 12715482--12715534 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12715472 GTTGACTTAG
* *
12715482 GCATACAGAGTTCATCCCCGGTCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
* *
12715508 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
12715534 G
1 G
12715535 ACCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGCCTAA
Found at i:12715891 original size:159 final size:156
Alignment explanation
Indices: 12715508--12716007 Score: 535
Period size: 159 Copynumber: 3.2 Consensus size: 156
12715498 CCCGGTCTAA
* * * *
12715508 GCATACGGAGTTCATTCCCAGCCTAAGACCAGACCGGACTGAGGGTTGCGACAACAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGATCGGACTGAGGGTTGCGACAGCAGGATCGATA
* * * *
12715573 GCACGCAGGGGGGTCGGGTCAGTCCCGACTTGTGCATTTTGCCTCTCCGGCC-AGCTGAGCGCCC
66 GCACGCAGGGGGGACCGGTCAGTCCCGACTTGTGCATTATGCCTCTCCGACCGA-CTGAGCGCCC
*
12715637 GCACGCCCGTTTCGTGGGTTGGCTTAG
130 GCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * *
12715664 GCATAGGGAGTTCATTCAAAGTCTAAGCCCTAG-TCGGACCGAGGGTTGTC-ACAGCGGGACCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGACC-AGATCGGACTGAGGGTTG-CGACAGCAGGATCGA
* * * *
12715727 CAGCACGCAGAGGGGGACCAGGTC-GATCCTCGGCTTGTGCATTATGCCTCTTCGACCGACTCAG
64 TAGCACGCAG-GGGGGACC-GGTCAG-TCC-CGACTTGTGCATTATGCCTCTCCGACCGACTGAG
* **
12715791 CGCCCGCACGCTCGTTTTGTGGGTTAACTTAG
125 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** *
12715823 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGACGGTTGCGGTAGCAGGATCAATA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGATCGGACTGAGGGTTGCGACAGCAGGATCGATA
* * * * * * * *
12715888 GCACGTAGGGGGGACCGGGCCAGTCCCTGACTTGCGCATTCTACCTCTCCAACTGACTGAGCACC
66 GCACGCAGGGGGGACC-GGTCAGTCCC-GACTTGTGCATTATGCCTCTCCGACCGACTGAGCGCC
12715953 CGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
12715981 GCATA-GAGAGTTCATT-CCATGTCTAAG
1 GCATACG-GAGTTCATTCCCA-GTCTAAG
12716008 TATACAGAGT
Statistics
Matches: 280, Mismatches: 51, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
156 56 0.20
157 15 0.05
158 98 0.35
159 110 0.39
160 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCAGATCGGACTGAGGGTTGCGACAGCAGGATCGATA
GCACGCAGGGGGGACCGGTCAGTCCCGACTTGTGCATTATGCCTCTCCGACCGACTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12717465 original size:17 final size:17
Alignment explanation
Indices: 12717443--12717483 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
12717433 GAGAAGAGTT
12717443 CATGACTTGGCTAAAGC
1 CATGACTTGGCTAAAGC
12717460 CATGACTTGGCTAAAGC
1 CATGACTTGGCTAAAGC
12717477 CATGACT
1 CATGACT
12717484 ACTGCCAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (17 bp):
CATGACTTGGCTAAAGC
Found at i:12719113 original size:26 final size:26
Alignment explanation
Indices: 12719084--12719136 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12719074 GTTGACTTAG
12719084 GCATAC-AGAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
*
12719110 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12719136 G
1 G
12719137 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12719298 original size:26 final size:26
Alignment explanation
Indices: 12719268--12719320 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12719258 GTTGGCTTAG
12719268 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATAGGGAGTTCATTCCCA-GTCTAA
*
12719294 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATTCCCAGTCTAA
12719320 G
1 G
12719321 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCCAGTCTAA
Found at i:12719661 original size:170 final size:170
Alignment explanation
Indices: 12719328--12719650 Score: 411
Period size: 170 Copynumber: 1.9 Consensus size: 170
12719318 AAGATCGGAC
* *
12719328 CGGACCGAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGGCAGCATACAGGGGGGATCGGGTTG
1 CGGACCGAGGGTTACGGCAGCAGGACCAGCAGCAGGATCGGCAGCACACAGGGGGGATCGGGTTG
* * * ** *
12719393 ATCCCTGACTTGCGCATTCTGTCTCTCTGGTAGACTGAGTGCCCCCACACTCATTTCGTGGGTTG
66 ATCCCTGACTTGAGCATTATGCCTCTCTGGTAGACTGAGCACCCCCACACTCATTTCATGGGTTG
*
12719458 GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGT
131 ACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGT
* * ** * *
12719498 CGGACCGAGGGTTATGGTAGCAGGACTGGTAGCAGGATC-GCAGCACGCAGAGGGGGATCGGGTT
1 CGGACCGAGGGTTACGGCAGCAGGACCAGCAGCAGGATCGGCAGCACACAG-GGGGGATCGGGTT
* ** * *
12719562 GATCCCTGACTTGAGCATTATGCCTCT-TCGGTCGGTTGAGCACCCGCA-AGCTCGTTTCATGGG
65 GATCCCTGACTTGAGCATTATGCCTCTCT-GGTAGACTGAGCACCCCCACA-CTCATTTCATGGG
12719625 TTGACTTAGGCATACAGAGTTC-TTCC
128 TTGACTTAGGCATACAGAGTTCATTCC
12719651 CCAGTCTAAG
Statistics
Matches: 130, Mismatches: 20, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
169 15 0.12
170 115 0.88
ACGTcount: A:0.20, C:0.25, G:0.32, T:0.24
Consensus pattern (170 bp):
CGGACCGAGGGTTACGGCAGCAGGACCAGCAGCAGGATCGGCAGCACACAGGGGGGATCGGGTTG
ATCCCTGACTTGAGCATTATGCCTCTCTGGTAGACTGAGCACCCCCACACTCATTTCATGGGTTG
ACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGT
Found at i:12719679 original size:26 final size:26
Alignment explanation
Indices: 12719634--12719692 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
12719624 GTTGACTTAG
*
12719634 GCATACAGAGTTCTTCCCCAGTCTAA
1 GCATACAGAGTTCTTCCCCAATCTAA
*
12719660 GCATACGGAGTTCATT-CCCAATCTAA
1 GCATACAGAGTTC-TTCCCCAATCTAA
12719686 -CAT-CAGA
1 GCATACAGA
12719693 CCGGACTGAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 21 0.72
27 2 0.07
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCTTCCCCAATCTAA
Found at i:12720171 original size:26 final size:26
Alignment explanation
Indices: 12720135--12720187 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12720125 GTTGGCTTAG
12720135 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
* *
12720161 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12720187 G
1 G
12720188 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12720383 original size:26 final size:26
Alignment explanation
Indices: 12720344--12720396 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12720334 GTTGATTTAG
12720344 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * * *
12720370 GCATACGGATTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12720396 G
1 G
12720397 ATTTAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12721040 original size:26 final size:26
Alignment explanation
Indices: 12721010--12721062 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12721000 GTTGACTTAG
*
12721010 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
12721036 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
12721062 G
1 G
12721063 ATTAAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:12721363 original size:158 final size:158
Alignment explanation
Indices: 12721088--12721378 Score: 363
Period size: 159 Copynumber: 1.8 Consensus size: 158
12721078 GGGTTACGGT
* * *
12721088 AGCAGCATCAGTAGCACGCAGGGGGGACCAGGCCGATCCCTGGCTTGTGCATTCTACCTCTTCGG
1 AGCAGCATCAGTAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATACCTCTTCGG
* * * * * * *
12721153 ATGGCTGAGTGCCCGCACGTTTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTC
66 ACGGCTCAGAGCCCGCACGCTTGTTTCATGGGTTGACCTAGGCATACGGAGTTCATTCCCA-GTC
12721217 TAAGCCCCAGTCGGACCTAGGGTTGTGGC
130 TAAGCCCCAGTCGGACCTAGGGTTGTGGC
* * * * * *
12721246 AGCAGGATCGGTAGCACGCTGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTC-TCT
1 AGCAGCATCAGTAGCACGCAG-GGGGGACCAGGCCGATCCCCGGCTTGCGCATTATACCTCTTC-
* * *
12721310 GGCCGGTTCAGAGCCCGCACGCTTGTTTCGTGGG-TGACCTAGGCATACGGAGTTCATTCCCAGT
64 GGACGGCTCAGAGCCCGCACGCTTGTTTCATGGGTTGACCTAGGCATACGGAGTTCATTCCCAGT
12721374 CTAAG
129 CTAAG
12721379 ATCGGACCAG
Statistics
Matches: 111, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
158 48 0.43
159 63 0.57
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.24
Consensus pattern (158 bp):
AGCAGCATCAGTAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATACCTCTTCGG
ACGGCTCAGAGCCCGCACGCTTGTTTCATGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCT
AAGCCCCAGTCGGACCTAGGGTTGTGGC
Found at i:12722411 original size:26 final size:26
Alignment explanation
Indices: 12722361--12722413 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12722351 GTTGGCTTAG
*
12722361 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
12722387 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
12722413 G
1 G
12722414 ATTGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:12722600 original size:26 final size:26
Alignment explanation
Indices: 12722570--12722622 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12722560 GTTGACTTAG
12722570 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATATGGAGTTCATCCCTAGTCTAA
*
12722596 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATCCCTAGTCTAA
12722622 G
1 G
12722623 ATTGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCTAGTCTAA
Found at i:12722922 original size:159 final size:158
Alignment explanation
Indices: 12722648--12723098 Score: 394
Period size: 159 Copynumber: 2.9 Consensus size: 158
12722638 GGTTTGCGGT
* * * * **
12722648 AGCAGGATCGACAGCACGC-AGGGGGGACCA-GACTGAT-CCCAGCTTGCACATTCTGCCTCTTC
1 AGCAGGATCGACAGCACGCAAGCGAGGACCAGGGC-GATCCCCAGCTTGCACATTATGCCTCCCC
* * * * * * * * * *
12722710 GGTCGGCTAAGTGCCCGCACACCCGTTCCGTGGGTT-AGCTTAGGCATAGGGAGTTCATTCCATG
65 GATCGACTCAGCGCCCGAACGCTCATTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCATG
* * *
12722774 TCTAAGCCCCAGCCGAATCGAGGGTTATGGC
129 TCTAAGCCCCAGCAG-ACCGAGGGTTACGGC
* * * * **
12722805 AGCGGGATCGACAGCACTCAGAG-GAGGACCAGGGCGATCCCCGGCTTGCGCATTATGCCTCTTC
1 AGCAGGATCGACAGCACGCA-AGCGAGGACCAGGGCGATCCCCAGCTTGCACATTATGCCTCCCC
* *
12722869 GA-CAGGCTCAGCGCCCGAACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TA
65 GATC-GACTCAGCGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAT-
* ** * *
12722932 GTCTAAGATCGGATCAGACCGAGGGTTACGGT
128 GTCTAAG-CCCCAGCAGACCGAGGGTTACGGC
* * * * *
12722964 AGTAGGATCGACAGCACGCAAGCGAGGACCAGGTCGGTCCTCAGCTTGCACATTCTGCCTCCCCG
1 AGCAGGATCGACAGCACGCAAGCGAGGACCAGGGCGATCCCCAGCTTGCACATTATGCCTCCCCG
* * * * * * *
12723029 ATCGACTGAGCGCTCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTACATGTC
66 ATCGACTCAGCGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTC
12723094 TAAGC
131 TAAGC
12723099 ATATGGAGTT
Statistics
Matches: 237, Mismatches: 46, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
157 17 0.07
158 14 0.06
159 199 0.84
160 7 0.03
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
AGCAGGATCGACAGCACGCAAGCGAGGACCAGGGCGATCCCCAGCTTGCACATTATGCCTCCCCG
ATCGACTCAGCGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTC
TAAGCCCCAGCAGACCGAGGGTTACGGC
Found at i:12723661 original size:26 final size:26
Alignment explanation
Indices: 12723624--12723676 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12723614 GTTGGCTTAG
*
12723624 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
12723650 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12723676 G
1 G
12723677 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12724383 original size:26 final size:26
Alignment explanation
Indices: 12724347--12724399 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12724337 GTTGACTTAG
*
12724347 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
12724373 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12724399 G
1 G
12724400 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12724877 original size:26 final size:26
Alignment explanation
Indices: 12724848--12724900 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12724838 GTTGGCTTAG
12724848 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
12724874 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
12724900 G
1 G
12724901 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:12725599 original size:159 final size:158
Alignment explanation
Indices: 12725105--12725716 Score: 499
Period size: 158 Copynumber: 3.9 Consensus size: 158
12725095 CCGCAGGACT
* * * * * * *
12725105 GGCAGCGGGATCGGCAGCATGCACAAGGGGACTGGGCTGACCCCCGACTTGTGCATTATGCCTCT
1 GGCAGCAGGATCGACAGCACGCAGAAGGGGACT-GGCCGATCCCCGACTTGCGCATTATGCCTCT
** * * *
12725170 CC-AGCCGGTTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCC
65 CCGA-CCGACTGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * *
12725234 AGTCTAAGATCGGACCGAACAAAGGGTTAC
129 AGTCTAAGATCGAACCGAACAGAGGGTTGC
* * * * * * * *
12725264 GGCAGCAAGATCGACAGCATGCA-AGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTACCTCT
1 GGCAGCAGGATCGACAGCACGCAGAAGGGGA-CTGGCCGATCCCCGACTTGCGCATTATGCCTCT
* * * *
12725328 CCGACCGACTGAGCGCCC-ACATGC-CTATTTCATGGGTT-AGCTTAGGCATAGGGAGTTCATT-
65 CCGACCGACTGAGCGCCCGA-ACGCTC-GTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTC
** * * * * * *
12725389 CCATGTCTAAGCCCTAGCTGGACCGAGGGTTGT
127 CCA-GTCTAAGATCGAACCGAACAGAGGGTTGC
* * * * * *
12725422 GGCAGC-GGCA-CAAGCAGCACGCAGAAGGGGACTGGCTGATCCCCGGCTTGCACATTATGTCTT
1 GGCAGCAGG-ATCGA-CAGCACGCAGAAGGGGACTGGCCGATCCCCGACTTGCGCATTATGCCTC
* * * *
12725485 TCCGACCAACTCAGCACCCGAACGCTCGTTTTGTGGGTTGACTTAGGCCATACGGAGTTCATTCC
64 TCCGACCGACTGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGG-CATACGGAGTTCATTCC
* *
12725550 CAGTTTAAGATCGAACCGAACTGAGGGTTGC
128 CAGTCTAAGATCGAACCGAACAGAGGGTTGC
* * * *
12725581 GGCAGCAGGATCGACAGCACGCATG--GGGGACCGAGCCAATCCCCGACTTGCGCATTCTGTCTC
1 GGCAGCAGGATCGACAGCACGCA-GAAGGGGACTG-GCCGATCCCCGACTTGCGCATTATGCCTC
* * * * * * * *
12725644 TTCGGCCGGCTAAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGACATACGGAGTTCATT-CC
64 TCCGACCGACTGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
12725708 ATGTCTAAG
129 A-GTCTAAG
12725717 CATATGGAGT
Statistics
Matches: 356, Mismatches: 78, Indels: 39
0.75 0.16 0.08
Matches are distributed among these distances:
157 11 0.03
158 197 0.55
159 140 0.39
160 8 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
GGCAGCAGGATCGACAGCACGCAGAAGGGGACTGGCCGATCCCCGACTTGCGCATTATGCCTCTC
CGACCGACTGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCGAACCGAACAGAGGGTTGC
Found at i:12725635 original size:317 final size:325
Alignment explanation
Indices: 12724973--12725717 Score: 884
Period size: 317 Copynumber: 2.3 Consensus size: 325
12724963 GACTGGACCG
* * *
12724973 ATCCCCGGCTTGTGCATTCTACCTCTCC-AGCCGGCTGAGCGCCCGTAAGCTCATTTCGTGGGTT
1 ATCCCCGGCTTGCGCATTCTACCTCTCCGA-CCGGCTGAGCGCCCGCATGCTCATTTCGTGGGTT
** *
12725037 GGCTTAGGCATATAGAGTTCATTCCATGTCTAATCCCTAGCCGGACCGAGGGTTGTGGCCGCAGG
65 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGG-CGCAGG
* * **
12725102 ACTGGCAGCGGGATCGGCAGCATGCACAAGGGGACTGGGCTGACCCCCGACTTGTGCATTATGCC
129 ACTGGCAGC--GA-CAGCAGCACGCACAAGGGGACTGGGCTGACCCCCGACTTGCACATTATGCC
*** * * * *
12725167 TCTCCAGCCGGTTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTC
191 TCTCCAGCCAACTCAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * *
12725232 CCAGTCTAAGATCGGACCGAACAAAGGGTTACGGCAGCAAGATCGACAGCATGCAAGGGGGATCG
256 CCAGTCTAAGATCGAACCGAACAAAGGGTTACGGCAGCAAGATCGACAGCACGCAAGGGGGACCG
* *
12725297 GGCCG
321 AGCCA
* * * *
12725302 ATCCCTGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGCCCACATGC-CTATTTCATGGGTT
1 ATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCATGCTC-ATTTCGTGGGTT
* * *
12725366 AGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTGGACCGAGGGTTGT-G-GCA-G-
65 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCGCAGGA
* * * * *
12725427 C-GGCA-C-A-AGCAGCACGCAGAAGGGGACT-GGCTGATCCCCGGCTTGCACATTATGTCTTTC
130 CTGGCAGCGACAGCAGCACGCACAAGGGGACTGGGCTGACCCCCGACTTGCACATTATGCCTCTC
* *
12725487 C-GACCAACTCAGCACCCGAACGCTCGTTTTGTGGGTTGACTTAGGCCATACGGAGTTCATTCCC
195 CAG-CCAACTCAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGG-CATACGGAGTTCATTCCC
* ** * * *
12725551 AGTTTAAGATCGAACCGAACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCATGGGGGACCGAG
258 AGTCTAAGATCGAACCGAACAAAGGGTTACGGCAGCAAGATCGACAGCACGCAAGGGGGACCGAG
12725616 CCA
323 CCA
* ** * * * *
12725619 ATCCCCGACTTGCGCATTCTGTCTCTTCGGCCGGCTAAGCGCCCGCATGCTCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTG
*
12725684 GCTTAGACATACGGAGTTCATTCCATGTCTAAGC
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12725718 ATATGGAGTT
Statistics
Matches: 356, Mismatches: 55, Indels: 22
0.82 0.13 0.05
Matches are distributed among these distances:
315 1 0.00
316 61 0.17
317 175 0.49
318 1 0.00
319 1 0.00
322 1 0.00
323 4 0.01
324 1 0.00
325 1 0.00
326 3 0.01
328 2 0.01
329 104 0.29
330 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (325 bp):
ATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCGCAGGAC
TGGCAGCGACAGCAGCACGCACAAGGGGACTGGGCTGACCCCCGACTTGCACATTATGCCTCTCC
AGCCAACTCAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
CTAAGATCGAACCGAACAAAGGGTTACGGCAGCAAGATCGACAGCACGCAAGGGGGACCGAGCCA
Found at i:12725727 original size:26 final size:26
Alignment explanation
Indices: 12725691--12725742 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12725681 TTGGCTTAGA
12725691 CATACGGAGTTCATTCC-ATGTCTAAG
1 CATACGGAGTTCATTCCTA-GTCTAAG
*
12725717 CATATGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCTAGTCTAAG
12725743 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCCTAGTCTAAG
Found at i:12725937 original size:26 final size:26
Alignment explanation
Indices: 12725900--12725952 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12725890 GTTGACTTAC
*
12725900 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
12725926 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12725952 G
1 G
12725953 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12727003 original size:26 final size:26
Alignment explanation
Indices: 12726967--12727017 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12726957 TTGACTTAGG
12726967 CATACAGAGTTCA-TCCCTAGTCTAAT
1 CATACAGAGTTCATTCCC-AGTCTAAT
*
12726993 CATACGGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
12727018 GATCGAATTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAT
Found at i:12727301 original size:159 final size:156
Alignment explanation
Indices: 12727116--12727492 Score: 389
Period size: 157 Copynumber: 2.4 Consensus size: 156
12727106 CGGTCGGTTG
* * * * * * *
12727116 AGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCTACGTCTATGCCCC
1 AGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTA-GTCTAAG-ACC
* ** * * *
12727181 AGCCA-GACCGAGGGTTGTGGCAGCGGGATCGACAGCAC-TCAGAGAGGGATCGGGCCGATCCTT
64 AGACAGGACCGAGGGTTGCCGCAG-GAGATCGACAACACGT-AG-GAGGGATCGGGCCGATCCTC
*
12727244 GGCTTGCGCATTATGCCTCTCCGACCAGCTC
126 GGCTTGCGCATTATACCTCTCCGACCAGCTC
* * * *
12727275 AGTGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCG
1 AGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CTAGTCTAAGACCA
* * * * * *
12727340 GACAGGACCGAGGGTTGCCGCAGTAGATTGACAACACGTAGGGGGGATCGGGCTGGTCGTCGGCT
65 GACAGGACCGAGGGTTGCCGCAGGAGATCGACAACACGTAGGAGGGATCGGGCCGATCCTCGGCT
* * * * *
12727405 TGCGCATTCTACCTCTCTGATCGGCTG
130 TGCGCATTATACCTCTCCGACCAGCTC
* * *
12727432 AGCGCTCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 AGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTA-GTCTAAG
12727493 CATACGAAGT
Statistics
Matches: 180, Mismatches: 34, Indels: 10
0.80 0.15 0.04
Matches are distributed among these distances:
156 2 0.01
157 93 0.52
158 16 0.09
159 66 0.37
160 3 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (156 bp):
AGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTAGTCTAAGACCAG
ACAGGACCGAGGGTTGCCGCAGGAGATCGACAACACGTAGGAGGGATCGGGCCGATCCTCGGCTT
GCGCATTATACCTCTCCGACCAGCTC
Found at i:12727503 original size:26 final size:26
Alignment explanation
Indices: 12727466--12727518 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12727456 GTTGGCTTAG
*
12727466 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
12727492 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12727518 G
1 G
12727519 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12727802 original size:13 final size:13
Alignment explanation
Indices: 12727784--12727808 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12727774 GCGCATTATG
12727784 CCTCTCCGATCGA
1 CCTCTCCGATCGA
12727797 CCTCTCCGATCG
1 CCTCTCCGATCG
12727809 GTTGACTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.48, G:0.16, T:0.24
Consensus pattern (13 bp):
CCTCTCCGATCGA
Found at i:12727856 original size:26 final size:26
Alignment explanation
Indices: 12727819--12727890 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 26
12727809 GTTGACTTAG
* *
12727819 GCATACGAAGTTCAT-CTTCACTCTAA
1 GCATACGGAGTTCATCCCT-ACTCTAA
* *
12727845 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTACTCTAA
*
12727871 GCATACGGAGTTCATTCCTA
1 GCATACGGAGTTCATCCCTA
12727891 GTCAAAGATT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
26 37 0.95
27 2 0.05
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTACTCTAA
Found at i:12727891 original size:26 final size:26
Alignment explanation
Indices: 12727840--12727893 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
12727830 TCATCTTCAC
*
12727840 TCTAAGCATATGGAGTTCATCCCTAG
1 TCTAAGCATACGGAGTTCATCCCTAG
*
12727866 TCTAAGCATACGGAGTTCATTCCTAG
1 TCTAAGCATACGGAGTTCATCCCTAG
12727892 TC
1 TC
12727894 AAAGATTGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (26 bp):
TCTAAGCATACGGAGTTCATCCCTAG
Found at i:12728390 original size:159 final size:157
Alignment explanation
Indices: 12727871--12728401 Score: 441
Period size: 159 Copynumber: 3.4 Consensus size: 157
12727861 CCTAGTCTAA
* * * * * *
12727871 GCATACGGAGTTCATTCCTAGTCAAAGATTGGACCAGACCGAGGGTTGCGGCCGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGAGGCAGCAGGATCGACA
* * * *
12727936 ACACGCAGGGGGGACCGAG-CTGATCCCCGACTTGCGCATTCTGCCTCTC-GACCTGCTGAGTGC
66 GCACGCAGGGGGGACCGAGTC-GATCCCTGACTTGCGCATTCTGCCTCTCGGA-CGGCTGAGTAC
* * * *
12727999 GCACACACCCATTTCGTGGGTTGGCTTAG
129 CCACACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * * * * *
12728028 GTATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCGGACCAAGGGTT-ATGCA--TGTACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCAGACCAAGGGTTGAGGCAGCAGGATCGA
* * * * *
12728088 CAGCACGCAGAGGGGGACC-ATGTCAATCCCTGGCTTGCGCATTATGCCTCTCCGACTGGCTCAG
64 CAGCACGCAG-GGGGGACCGA-GTCGATCCCTGACTTGCGCATTCTGCCTCTCGGAC-GGCTGAG
* ** **
12728152 TACCCGA-ACGCTTGTTTTTTGGGTTAACTTAG
126 TACCC-ACACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** ** ** *
12728184 GCATATGAAGTTCATTCCCAGTCTATGATTAGACTGGACTGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGAGGCAGCAGGATCGACA
* * * * *
12728249 GCACGCAGGGAGGGACCGAGTCGATCCCTGACTTTCACATTCTACCTCTCTGGTCGGCTGAGCAC
66 GCACGCAGGG-GGGACCGAGTCGATCCCTGACTTGCGCATTCTGCCTCTC-GGACGGCTGAGTAC
12728314 CCACACGCTCGTTTCGTGGGTTGGCTTAG
129 CCACACGCTCGTTTCGTGGGTTGGCTTAG
* *
12728343 GCATACTGAGTTTATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGAGGCAGCAGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGAGGCAGCAGGA
12728402 CCAGCAGCAG
Statistics
Matches: 279, Mismatches: 78, Indels: 32
0.72 0.20 0.08
Matches are distributed among these distances:
154 14 0.05
155 34 0.12
156 63 0.23
157 40 0.14
158 3 0.01
159 122 0.44
160 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGAGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGAGTCGATCCCTGACTTGCGCATTCTGCCTCTCGGACGGCTGAGTACCC
ACACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12729386 original size:26 final size:26
Alignment explanation
Indices: 12729350--12729400 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12729340 TTGACTTAGG
12729350 CATACGGAGTTCATCCCTAGTCTAAA
1 CATACGGAGTTCATCCCTAGTCTAAA
* *
12729376 CATATGGAGTTCATTCCTAGTCTAA
1 CATACGGAGTTCATCCCTAGTCTAA
12729401 GATCGGACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATCCCTAGTCTAAA
Found at i:12729820 original size:159 final size:157
Alignment explanation
Indices: 12729376--12729876 Score: 449
Period size: 159 Copynumber: 3.2 Consensus size: 157
12729366 CTAGTCTAAA
* * * * * *
12729376 CATATGGAGTTCATTCCTA-GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAAGATTGATA
1 CATACGGAGTTCATTCC-ACGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAAGATCGACA
* * * * * * *
12729440 GCACGCAGAGGGGA-CTGGGCCGTTCCTCAGCTTGCGCATTCTGCGTCTCAGACCGGTTGAGCG-
65 GCACGCAGGGGGGATC-GGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGC
* *
12729503 CCGCACGCCCGTTTCATGGGTTGGCTTAGG
129 CCGCACGCTCGTTT-TTGGGTTGGCTTAGG
* * * * ** * * * *
12729533 CATAGGGAGATCATTCCATGTATAAGCCCCA-ACCGAACAGAGGGTTGTGGTAGCGAGACCGACA
1 CATACGGAGTTCATTCCACGTCTAAG-ATCAGACCGAACCGAGGGTTGTGGCAGCAAGATCGACA
* * * * * *
12729597 GCACGCAGAGAGGGATCGGGTTGATCCCCGACTTGCACATTATGCCTCTCCGATCGGCTT-AGCG
65 GCACGCAG-GGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGG-TTGAGCG
* * * *
12729661 CCCGAATGCTCATTTTGTGGGTTGACTTAGG
128 CCCGCACGCTCGTTTT-TGGGTTGGCTTAGG
* *
12729692 CATACGGAGTTCATTCC-CAGTCTAAGATCAGACCAAACCGAGGGTTGTGGCAG-TAGTATCGAC
1 CATACGGAGTTCATTCCAC-GTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAAG-ATCGAC
* * * *
12729755 AGCACGCAGTGGGGGATCGGGTCGATCCTTGGCTTGTGCATTCTCCCTCTCCGGTCGGTTGAGCG
64 AGCACGCAG-GGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCG
**
12729820 CTTGCACGCTCGTTTCTTGGGTTGGCTTAGG
128 CCCGCACGCTCGTTT-TTGGGTTGGCTTAGG
* *
12729851 CATACAGAGTTTATTCCACGTCTAAG
1 CATACGGAGTTCATTCCACGTCTAAG
12729877 CATACGGAGT
Statistics
Matches: 268, Mismatches: 63, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
156 1 0.00
157 54 0.20
158 44 0.16
159 167 0.62
160 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (157 bp):
CATACGGAGTTCATTCCACGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAAGATCGACAG
CACGCAGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCC
GCACGCTCGTTTTTGGGTTGGCTTAGG
Found at i:12729879 original size:26 final size:26
Alignment explanation
Indices: 12729850--12729902 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12729840 GTTGGCTTAG
*
12729850 GCATACAGAGTTTATT-CCACGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
12729876 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12729902 G
1 G
12729903 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12730232 original size:514 final size:511
Alignment explanation
Indices: 12729314--12730417 Score: 1261
Period size: 514 Copynumber: 2.2 Consensus size: 511
12729304 CCGGTAAACT
* * * * * * * *
12729314 GAGCGTCCACACGCTTGCTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTA-GTCTAAACA
1 GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCC-ACGTCTAAGCA
* * * **
12729378 TATGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTT------GC-GG--CAGCA--A
65 TACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATTGAGGGTTACGACAGCAGGACCAGCAGTA
* * * * * *
12729432 -GATTGATAGCACGCAGAGGGGACTGGGCCGTTCCTCAGCTTGCGCATTCTGCGTCTCAGACCGG
130 GGATCGACAGCACGCAGAGGGGACTGGGCCGATCCTCAGCTTGCCCATTCTGCCTCTCAGACCGA
*
12729496 TTGAGCGCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGATCATTCCATGTATAAGCC
195 CTGAGCGCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGATCATTCCATGTATAAGCC
* * * * * *
12729561 CCAACCGAACAGAGGGTTGTGGTAGCGAGACCGACAGCACGCAGAGAGGGATCGGGTTGATCCCC
260 CCAACCGAACAGAGGATTGTAGCAGCGAGACCGACAACACGCAGAGAGGGACCGGGTCGATCCCC
* *
12729626 GACTTGCACATTATGCCTCTCCGATCGGCTTAGCGCCCGAATGCTCATTTTGTGGGTTGACTTAG
325 GACTTGCACATTATGCCTCTCCGATAGGCTTAGCGCCCGAATGCTCATTTCGTGGGTTGACTTAG
* * * *
12729691 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGTGGCAGTAGTATCGACA
390 GCATACGAAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGGTTGTGGCAGCAGGATCGACA
* * * *** ** *** * *
12729756 GCACGCAGTGGGGGATCGGGTC-GATCCTTGGCTTGTGCATTCTCCCTCTCCGGTCGGTT
455 GCACGCA--GGGGGACCAGGCCAG-TCCCCAGCTTACGCATTCTCCCTCTCCAACCGATC
** * *
12729815 GAGCGCTTGCACGCTCGTTTCTTGGGTTGGCTTAGGCATACAGAGTTTATTCCACGTCTAAGCAT
1 GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCACGTCTAAGCAT
12729880 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATTGAGGGTTACGACAGCAGGACCAGCAGTAG
66 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATTGAGGGTTACGACAGCAGGACCAGCAGTAG
* * * *
12729945 GATCGACAGCACGCAGGGGGGACTGGGTCGATCC-CAGGCTTGCCCATTCTGCCTCTCTGGCCGA
131 GATCGACAGCACGCAGAGGGGACTGGGCCGATCCTCA-GCTTGCCCATTCTGCCTCTCAGACCGA
* * * *
12730009 CTGAGCGCCCGCACGCCCGTTTTATGGGTTGGCTTAGGCATAGTGAGTTCATTCCATGTCTAAGC
195 CTGAGCG-CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGATCATTCCATGTATAAGC
** * * * * * *
12730074 CCCAGTCGGACTGAGGATTGTAGCAGTGGGACCGGCAACACGTAGA-AGGGGACCGGGTCGATCC
259 CCCAACCGAACAGAGGATTGTAGCAGCGAGACCGACAACACGCAGAGA-GGGACCGGGTCGATCC
* * * * * **
12730138 CTGGCTTGCCCGTTATGCCTCTCCGGTAGGCTCT-GCGCCCGAATGCTTGTTTCGTGGGTTGACT
323 CCGACTTGCACATTATGCCTCTCCGATAGGCT-TAGCGCCCGAATGCTCATTTCGTGGGTTGACT
* ** * *
12730202 TAGGCATACGAAGTTCATTCCCAATCTAAGATCAGATCGGACTGAGGGTTGTGGTAGCAGGATCG
387 TAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGGTTGTGGCAGCAGGATCG
* * *
12730267 ACAGCACGTAGGGGGACCAGGCCAGTCCCCAGCTTACGCATTCTGCCTGTCCAACCGATC
452 ACAGCACGCAGGGGGACCAGGCCAGTCCCCAGCTTACGCATTCTCCCTCTCCAACCGATC
* * *
12730327 GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGGATACGGAGTTCATTCCATGTCTAAGCAT
1 GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCACGTCTAAGCAT
*
12730392 ATGGAGTTCATTCCCAGTCTAAGATC
66 ACGGAGTTCATTCCCAGTCTAAGATC
12730418 AGACCGCACC
Statistics
Matches: 497, Mismatches: 88, Indels: 25
0.81 0.14 0.04
Matches are distributed among these distances:
500 1 0.00
501 89 0.18
507 2 0.00
508 2 0.00
510 5 0.01
512 119 0.24
513 59 0.12
514 219 0.44
515 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (511 bp):
GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCACGTCTAAGCAT
ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATTGAGGGTTACGACAGCAGGACCAGCAGTAG
GATCGACAGCACGCAGAGGGGACTGGGCCGATCCTCAGCTTGCCCATTCTGCCTCTCAGACCGAC
TGAGCGCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGATCATTCCATGTATAAGCCC
CAACCGAACAGAGGATTGTAGCAGCGAGACCGACAACACGCAGAGAGGGACCGGGTCGATCCCCG
ACTTGCACATTATGCCTCTCCGATAGGCTTAGCGCCCGAATGCTCATTTCGTGGGTTGACTTAGG
CATACGAAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGGTTGTGGCAGCAGGATCGACAG
CACGCAGGGGGACCAGGCCAGTCCCCAGCTTACGCATTCTCCCTCTCCAACCGATC
Found at i:12730275 original size:159 final size:157
Alignment explanation
Indices: 12729937--12730390 Score: 346
Period size: 159 Copynumber: 2.9 Consensus size: 157
12729927 CAGCAGGACC
* * * *
12729937 AGCAGTAGGATCGACAGCACGCAGGGGGGACTGGGTCGATCCCAGGCTTGCCCATTCTGCCTCTC
1 AGCAGCAGGATCGACAGCACGTA-GGGGGACCGGGTCGATCCCAGGCTTGCCCATTATGCCTCTC
* * * * * * * *
12730002 TGGCCGACTGAGCGCCCGCACGCCCGTTTTATGGGTTGGCTTAGGCATAGTGAGTTCATTCCATG
65 CGGCAGACTCAGCGCCCGAACGCCCGTTTCATGGGTTGACTTAGGCATAGTAAGTTCATTCCATA
*
12730067 TCTAAGCCCCAGTCGGACTGAGGATTGT
130 TCTAAGCACCAGTCGGACTGAGGATTGT
** * * * * *
12730095 AGCAGTGGGACCGGCAACACGTAGAAGGGGACCGGGTCGATCCCTGGCTTGCCCGTTATGCCTCT
1 AGCAGCAGGATCGACAGCACGTAG--GGGGACCGGGTCGATCCCAGGCTTGCCCATTATGCCTCT
* * * * ** *
12730160 CCGGTAGGCTCTGCGCCCGAATGCTTGTTTCGTGGGTTGACTTAGGCATACG-AAGTTCATTCCC
64 CCGGCAGACTCAGCGCCCGAACGCCCGTTTCATGGGTTGACTTAGGCATA-GTAAGTTCATT-CC
* *
12730224 A-ATCTAAG-ATCAGATCGGACTGAGGGTTGT
127 ATATCTAAGCACCAG-TCGGACTGAGGATTGT
* * * * * * * *
12730254 GGTAGCAGGATCGACAGCACGTAGGGGGACCAGG-CCAGTCCCCA-GCTTACGCATTCTGCCTGT
1 AGCAGCAGGATCGACAGCACGTAGGGGGACCGGGTCGA-T-CCCAGGCTTGCCCATTATGCCTCT
** * * * * * * *
12730317 CCAACCGA-TCGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGGATACG-GAGTTCATTCC
64 CCGGCAGACTC-AGCGCCCGAACGCCCGTTTCATGGGTTGACTTAGGCATA-GTAAGTTCATTCC
*
12730380 ATGTCTAAGCA
127 ATATCTAAGCA
12730391 TATGGAGTTC
Statistics
Matches: 231, Mismatches: 55, Indels: 20
0.75 0.18 0.07
Matches are distributed among these distances:
156 7 0.03
157 77 0.33
158 25 0.11
159 118 0.51
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
AGCAGCAGGATCGACAGCACGTAGGGGGACCGGGTCGATCCCAGGCTTGCCCATTATGCCTCTCC
GGCAGACTCAGCGCCCGAACGCCCGTTTCATGGGTTGACTTAGGCATAGTAAGTTCATTCCATAT
CTAAGCACCAGTCGGACTGAGGATTGT
Found at i:12730915 original size:26 final size:26
Alignment explanation
Indices: 12730885--12730963 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
12730875 ATTGACTTAG
**
12730885 GCATACGAAGTTCATCTTCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12730911 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
12730937 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12730963 G
1 G
12730964 ATTGGACCAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12731451 original size:26 final size:26
Alignment explanation
Indices: 12731415--12731464 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
12731405 GGCTTAGGCA
12731415 TACGGAGTTCATT-CCATGTCTAAGCC
1 TACGGAGTTCATTCCCA-GTCTAAGCC
12731441 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
12731465 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCC
Found at i:12731660 original size:26 final size:26
Alignment explanation
Indices: 12731624--12731673 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
12731614 GACTTACGCA
12731624 TACGAAGTTCATCCCCAATCTAAGCG
1 TACGAAGTTCATCCCCAATCTAAGCG
* * *
12731650 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATCCCCAATCTAAG
12731674 ATCGAATCGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (26 bp):
TACGAAGTTCATCCCCAATCTAAGCG
Found at i:12738533 original size:26 final size:26
Alignment explanation
Indices: 12738494--12738546 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12738484 GTTGACTTAG
12738494 GCATACGGACTTCATGCCCAGTCTAA
1 GCATACGGACTTCATGCCCAGTCTAA
* * *
12738520 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGACTTCATGCCCAGTCTAA
12738546 G
1 G
12738547 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATGCCCAGTCTAA
Found at i:12738822 original size:159 final size:158
Alignment explanation
Indices: 12738607--12739023 Score: 432
Period size: 159 Copynumber: 2.6 Consensus size: 158
12738597 GACCGGGCTA
*
12738607 ATCCCCGGCTTGCGCATTCTGCCTCTT-CGACCGGCTGAGCGCCCGCACGC-CGGTTTCATGGGT
1 ATCCCCGGCTTGCGCATTCTGCCT-TTCCGACTGGCTGAGCG-CCGCACGCTC-GTTTCATGGGT
* * * * * *
12738670 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-TCGGACCGAGGGTTGTGGCAGCC
63 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGACCAGACCAAGGGTTGCGGCAGCA
* *
12738734 TGACCGACAGCAAGTAGAGGA-GGACCGAGCCG
127 GGACCGACAGCAAGCAG-GGAGGGACCGAGCCG
* * * * *
12738766 ATCCCTGGCTTGCGCATTATGCCTTTCCGACTGGCTTAGCGTCCGCACACTCGTTTCATTGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTTTCCGACTGGCTGAGCG-CCGCACGCTCGTTTCATGGGTTG
* * * * ** *
12738831 ACTTAGGCGTACAGAGTTCATTCCCA-GTCTAGGATCAGACCAGACCAAGGGTTGCGGCAGTAGG
65 GCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAGACCAGACCAAGGGTTGCGGCAGCAGG
* * *
12738895 ATCGACAGCATGCAGGGAGGGACCGGGCCG
129 ACCGACAGCAAGCAGGGAGGGACCGAGCCG
* ** * * * *
12738925 ATCCCCGACTTATGCATTCTGCCTCTCC-AGCTAGCTGAGTGCCTGCACGCTTGTTTCATGGGTT
1 ATCCCCGGCTTGCGCATTCTGCCTTTCCGA-CTGGCTGAGCGCC-GCACGCTCGTTTCATGGGTT
12738989 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
64 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12739024 ATACGGAGTT
Statistics
Matches: 208, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
158 13 0.06
159 191 0.92
160 4 0.02
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
ATCCCCGGCTTGCGCATTCTGCCTTTCCGACTGGCTGAGCGCCGCACGCTCGTTTCATGGGTTGG
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGACCAGACCAAGGGTTGCGGCAGCAGGAC
CGACAGCAAGCAGGGAGGGACCGAGCCG
Found at i:12739026 original size:26 final size:26
Alignment explanation
Indices: 12738996--12739048 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12738986 GTTGGCTTAG
12738996 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
12739022 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
12739048 G
1 G
12739049 ATCTGATCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:12739168 original size:185 final size:184
Alignment explanation
Indices: 12738844--12739207 Score: 462
Period size: 185 Copynumber: 2.0 Consensus size: 184
12738834 TAGGCGTACA
* * * * *
12738844 GAGTTCATTCCCAGTCTAGGATCAGACCAGACCAAGGGTTGCGGCAGTAGGATCGACAGCATGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCAGCAGCAGGATCGACAGCAGGCA
* * * ** *
12738909 GGGAGGGACCGGGCCGATCCCCGACTTATGCATTCTGCCTCTCCAGCTAGCTGAGTGCCTGCACG
66 AGGAGGGACCGGGCCGATCCCCGACTTATGCATTCTACCTCTCCAGCTAGCTAAGCACCCGCACG
*
12738974 CTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
131 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC-AAGCATACG
* * * * * *
12739029 GAGTTCATTCTCAGTCTAAGATCTGATCAAATCGAA-GGTTGCAGCAGCAGGATGGGCAGCAGGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAAA-CCAAGGGTTGCAGCAGCAGGATCGACAGCAGGC
* * * * * * *
12739093 AAGGAGGGACCGGGCTGATCCCCGACTTGTGCATTCTACCTCT-CTGATCGGTTAAGCACCCGTA
65 AAGGAGGGACCGGGCCGATCCCCGACTTATGCATTCTACCTCTCCAGCT-AGCTAAGCACCCGCA
12739157 CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAGC
129 CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAGC
12739208 CCCAGTCAGA
Statistics
Matches: 152, Mismatches: 25, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
184 7 0.05
185 142 0.93
186 3 0.02
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (184 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCAGCAGCAGGATCGACAGCAGGCA
AGGAGGGACCGGGCCGATCCCCGACTTATGCATTCTACCTCTCCAGCTAGCTAAGCACCCGCACG
CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAGCATACG
Found at i:12739870 original size:26 final size:26
Alignment explanation
Indices: 12739834--12739886 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12739824 GTTGGCTTAG
12739834 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12739860 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12739886 G
1 G
12739887 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12740177 original size:838 final size:839
Alignment explanation
Indices: 12738582--12740703 Score: 2172
Period size: 841 Copynumber: 2.5 Consensus size: 839
12738572 AGCAGGATTG
* * * * * * *
12738582 GCAGCACGTAGGGGGGACCGGGCTAATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGC
1 GCAGCACGCAGGGGGGACCGAGCCAATCCCCGACTTGCGCATTCTACCTCTCCAACCGGCTGAGC
* * * * **
12738647 GCCCGCACGCCGGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGT
66 ACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCACC
* ** ***
12738712 CGGACCGAGGGTTGTGGCAGCCTGACCGACAGCAAGTAGAGGAGGACCGAGCCGATCCCTGGCTT
131 CGAACCGAGGGTTGTGGCAGCAGGACCGACAGCAAGTAGAGGAGGACCGAGCCGATCCCCAACTT
* * * *
12738777 GCGCATTATGCCTTTCCGACTGGCTTAGCGTCCGCACACTCGTTTCATTGGTTGACTTAGGCGTA
196 GCGCATTATGCCTTTCCGACTGGCTTAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATA
* ** * *
12738842 CAGAGTTCATTCCCAGTCTAGGATCAGACCAGACCAAGGGTTGCGGCAGTAGGATCGACAGCATG
261 CAGAGATCATTCCCAACCTAAGATCAGACCAGACCAAGGGTTGCGGCAGTAGGATCGACAGCACG
* * * * ** **
12738907 CAGGGAGGGACCGGGCCGATCCCCGACTTATGCATTCTGCCTCTCCAGCTAGCTGAGTGCCTGCA
326 CAGGGAGGGACCGGGCCAATCCCCGACTTACGCATTCTGCCTCTCCACCGAGCTGAGCACCCACA
* *
12738972 CGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
391 CGCTCGATTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
* * * *
12739037 TCTCAGTCTAAGATCTGATCAAATCGAAGGTTGCAGCAGCAGGATGGGCAGCAGGCAAGGAGGGA
456 TCCCAGTCTAAGATCTGACCAAATCGAAGGTTGCAGCAGCAGGATCGGCAGCACGCAAGGAGGGA
* * * ** * * * *
12739102 CCGGGCTGATCCCCGACTTGTGCATTCTACCTCTCTGATCGGTTAAGCACCCGTACGCTCGTTTC
521 CCAGGCAGATACCCGACTTGCACATTCTACCTCTCTGACCGATTAAGCACCAGCACGCTCGTTTC
*
12739167 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAGCCCCAGTCAGATCAAGGGTTGTGGC
586 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAGCCCCAGTCAGATCAAGGGTTATGGC
*
12739232 AGCAGGATCGGTAACGGGATCAACAGCACACAGAGGGGGACCGAGCTGATCCCCGACTTACGCAT
651 AGCAGGATCGGCAACGGGATCAACAGCACACAGAGGGGGACCGAGCTGATCCCCGACTTACGCAT
* * * *
12739297 TATGCCTCTCCGACCGGCTGAACGCCCGCACGTTCGTTTTGTGGGTTGACGTAGGCATATGAAGT
716 TATGCCTCTCCGACCGGCTGAACGCCCACACGCTCATTTTGTGGGTTGACGTAGGCATACGAAGT
12739362 TCATCC-CTAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGCA
781 TCATCCTC-AATCTAAGCATACAGAGTTCATT-CCAGTCTAAGATCGGACCAGACTGAGCA
* * * ** *
12739422 GCAGCACGCAGGGGGGATCGAGCCGATCCCCGACTTTCGCATTCTACCTCTCCAATTGGTTGAGC
1 GCAGCACGCAGGGGGGACCGAGCCAATCCCCGACTTGCGCATTCTACCTCTCCAACCGGCTGAGC
** * *
12739487 ACCCTGCACGCCCGTTTTGTGGGTTTGCTTAGGCATAGGGAGCTCATTGCATGTCTAAGCCCCAC
66 ACCC-GCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAC
* * *
12739552 CCGAACC-ATGGGTTGTGGCAGCAGGACCGACAGCATGTAGAGGGGGATCGAGCCGATCCCCAAC
130 CCGAACCGA-GGGTTGTGGCAGCAGGACCGACAGCAAGTAGAGGAGGACCGAGCCGATCCCCAAC
** *
12739616 TTGCGCATTATGCCTTTTTGA-TCGG-TTCAGTGCCCGCACACTCATTTCATGGGTTGACTTAGG
194 TTGCGCATTATGCCTTTCCGACT-GGCTT-AGCGCCCGCACACTCATTTCATGGGTTGACTTAGG
* * * * *
12739679 CATAC-GAAGATCATTCCCAACCTAAGATCGGATCGGACCTAGGGTTGCGGTAGTAGGATCGACA
257 CATACAG-AGATCATTCCCAACCTAAGATCAGACCAGACCAAGGGTTGCGGCAGTAGGATCGACA
* ** *
12739743 GCACGTA-GG-GGGACCGGGCCAATCCTTGGCTTACGCATTCTGCCTCTCCGACCGA-CTG-GCA
321 GCACGCAGGGAGGGACCGGGCCAATCCCCGACTTACGCATTCTGCCTCTCC-ACCGAGCTGAGCA
* *
12739804 CCCACACGCTCGATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGA
385 CCCACACGCTCGATTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
** * * *
12739869 GTTCATTCCCAGTCTAAGATC-GAACCGGA-CTGAGGGTTGCGGCAGCAGGATCGGTAGCACGC-
450 GTTCATTCCCAGTCTAAGATCTG-ACCAAATC-GAAGGTTGCAGCAGCAGGATCGGCAGCACGCA
* ** *
12739931 A-GAGGGGATCAGGCAGATACCCGACTTGCACATTCTGTCTCTC-GAGCCGATTGAGCACCAGCA
513 AGGA-GGGACCAGGCAGATACCCGACTTGCACATTCTACCTCTCTGA-CCGATTAAGCACCAGCA
* * * ** *
12739994 CGTTCGTTTCATGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTATAAGCCCCAGTTGGATCG
576 CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT-CAAGCCCCAGTCAGATCA
* ** * * *
12740059 AGGGTTATGGCAGCAGGA-CTGGCAGCGGGATCGGCAGCACGCAGAGGGGGACCGTGCTGATCCT
640 AGGGTTATGGCAGCAGGATC-GGCAACGGGATCAACAGCACACAGAGGGGGACCGAGCTGATCCC
* * *
12740123 CGGCTTACGCATTATGCCTCTCCGACCGGCTGAGCGCCCACACGCTCATTTTGTGGGTTGACTTA
704 CGACTTACGCATTATGCCTCTCCGACCGGCTGAACGCCCACACGCTCATTTTGTGGGTTGACGTA
*
12740188 GGCATACGAAGTTCATCCTCAGTCTAAGCATACAGAGTTCATTCCAGTCTAAGATCGGACCGAAC
769 GGCATACGAAGTTCATCCTCAATCTAAGCATACAGAGTTCATTCCAGTCTAAGATCGGACC--A-
*
12740253 CGAGGGTTGCGACAGCA
831 -GA---CT--G--AGCA
** * * ** *
12740270 GGATCGGTAGCACGCA-GGGGGACCG-GGTAGGTCCCCGGCTTGCGCATTCTACCTCTCTGACCA
1 -G--C---AGCACGCAGGGGGGACCGAGCCA-ATCCCCGACTTGCGCATTCTACCTCTCCAACCG
* * * * *
12740333 ACTGAGCGCCCGCATGCCCGTTTCAT--G--GG--T----A-AGGGAGTTGATTCCATGTCTAAG
59 GCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAG
* * * * * * ** *
12740387 CCCCAGCCGGACCGAGGGTTGTGGCAGCGGGA-CTAGCAGCACGTAGAGGGGGAGTGGGCCGATC
124 CCCCACCCGAACCGAGGGTTGTGGCAGCAGGACCGA-CAGCAAGTAGAGGAGGACCGAGCCGATC
***** * * * * *** * *
12740451 TTTGGCTTGCGCATTATGCCTTTCTGGCTGGCTCAGTGATAGCACGCTCGTTTCATGGGTTGACT
188 CCCAACTTGCGCATTATGCCTTTCCGACTGGCTTAGCGCCCGCACACTCATTTCATGGGTTGACT
* * * ** * * *
12740516 TATGCGTACAGAGTTCATTCCCAGTCTAAGATC-GAACC-GAACCGAGGGTT-CGGCAGCAAGAT
253 TAGGCATACAGAGATCATTCCCAACCTAAGATCAG-ACCAG-ACCAAGGGTTGCGGCAGTAGGAT
* * * * * * *
12740578 CGACAGCACGTAGGG-GGGACTGGGCCGATCCTCGACTTGCACATTCTGCCTCTCCGGCC-AGCT
316 CGACAGCACGCAGGGAGGGACCGGGCCAATCCCCGACTTACGCATTCTGCCTCTCC-ACCGAGCT
** * * * *
12740641 GAGTGCTCC-CATGCTTGTTTCATGGATTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
380 GAGCAC-CCACACGCTCGATTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12740704 CCCAGCCGGA
Statistics
Matches: 1063, Mismatches: 177, Indels: 82
0.80 0.13 0.06
Matches are distributed among these distances:
836 4 0.00
837 109 0.10
838 275 0.26
839 40 0.04
840 91 0.09
841 413 0.39
842 56 0.05
843 2 0.00
844 1 0.00
846 2 0.00
848 5 0.00
849 1 0.00
850 1 0.00
851 1 0.00
852 13 0.01
853 41 0.04
854 8 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (839 bp):
GCAGCACGCAGGGGGGACCGAGCCAATCCCCGACTTGCGCATTCTACCTCTCCAACCGGCTGAGC
ACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCACC
CGAACCGAGGGTTGTGGCAGCAGGACCGACAGCAAGTAGAGGAGGACCGAGCCGATCCCCAACTT
GCGCATTATGCCTTTCCGACTGGCTTAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGCATA
CAGAGATCATTCCCAACCTAAGATCAGACCAGACCAAGGGTTGCGGCAGTAGGATCGACAGCACG
CAGGGAGGGACCGGGCCAATCCCCGACTTACGCATTCTGCCTCTCCACCGAGCTGAGCACCCACA
CGCTCGATTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATCTGACCAAATCGAAGGTTGCAGCAGCAGGATCGGCAGCACGCAAGGAGGGA
CCAGGCAGATACCCGACTTGCACATTCTACCTCTCTGACCGATTAAGCACCAGCACGCTCGTTTC
ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAGCCCCAGTCAGATCAAGGGTTATGGC
AGCAGGATCGGCAACGGGATCAACAGCACACAGAGGGGGACCGAGCTGATCCCCGACTTACGCAT
TATGCCTCTCCGACCGGCTGAACGCCCACACGCTCATTTTGTGGGTTGACGTAGGCATACGAAGT
TCATCCTCAATCTAAGCATACAGAGTTCATTCCAGTCTAAGATCGGACCAGACTGAGCA
Found at i:12740226 original size:26 final size:25
Alignment explanation
Indices: 12740189--12740240 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
12740179 GTTGACTTAG
12740189 GCATACGAAGTTCATCCTCAGTCTAA
1 GCATACGAAGTTCATCC-CAGTCTAA
*
12740215 GCATAC-AGAGTTCATTCCAGTCTAA
1 GCATACGA-AGTTCATCCCAGTCTAA
12740240 G
1 G
12740241 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (25 bp):
GCATACGAAGTTCATCCCAGTCTAA
Found at i:12740720 original size:157 final size:159
Alignment explanation
Indices: 12740366--12740731 Score: 398
Period size: 157 Copynumber: 2.3 Consensus size: 159
12740356 CATGGGTAAG
* ** *
12740366 GGAGTTGATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACTAGCAGCACGT
1 GGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAAGACGAGCAGCACGT
* * * * * * * ** *
12740431 AGAGGGGGAGTGGGCCGATCTTTGGCTTGCGCATTATGCCTTTCTGGCTGGCTCAGTGATAGCAC
66 AGAGGGGGACTGGGCCGATCCTCGACTTGCACATTATGCCTCTCCGGCCAGCTCAGTGATACCAC
* * *
12740496 GCTCGTTTCATGGGTTGACTTATGCGTAC
131 GCTCGTTTCATGGATTGACTTAGGCATAC
* ** * * * *
12740525 AGAGTTCATTCCCA-GTCTAAGATCGAACCGAACCGAGGGTT-CGGCAGCAAGATCGA-CAGCAC
1 GGAGTTCATT-CCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAAGA-CGAGCAGCAC
* * * *
12740587 GTAG-GGGGGACTGGGCCGATCCTCGACTTGCACATTCTGCCTCTCCGGCCAGCTGAGTGCTCCC
64 GTAGAGGGGGACTGGGCCGATCCTCGACTTGCACATTATGCCTCTCCGGCCAGCTCAGTGATACC
* * *
12740651 ATGCTTGTTTCATGGATTGGCTTAGGCATAC
129 ACGCTCGTTTCATGGATTGACTTAGGCATAC
*
12740682 GGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCA
1 GGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCA
12740732 GGACCGGCAG
Statistics
Matches: 164, Mismatches: 39, Indels: 9
0.77 0.18 0.04
Matches are distributed among these distances:
156 3 0.02
157 101 0.62
158 25 0.15
159 32 0.20
160 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
GGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAAGACGAGCAGCACGT
AGAGGGGGACTGGGCCGATCCTCGACTTGCACATTATGCCTCTCCGGCCAGCTCAGTGATACCAC
GCTCGTTTCATGGATTGACTTAGGCATAC
Found at i:12740873 original size:171 final size:170
Alignment explanation
Indices: 12740566--12740874 Score: 356
Period size: 171 Copynumber: 1.8 Consensus size: 170
12740556 ACCGAGGGTT
* *
12740566 CGGCAGCAAGATCGACAGCACGTAGGGGGGACTGGGCCGATCCTCGACTTGCACATTCTGCCTCT
1 CGGCAGCAAGATCGACAGCACGTAGGGGGGACTGGGCCGATCCTCGACTTACACATTATGCCTCT
** * * * * * *
12740631 CCGGCCAGCTGAGTGCTCCCATGCTTGTTTCATGGATTGGCTTAGGCATACGGAGTTCATTCCAT
66 CCGGCCAGCTGAGCACTCCCACGCTCGTTTCATGGATTGACTTAGACATACGAAGTTCATCCCAT
12740696 GTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCAGGAC
131 GTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCAGGAC
** * * *
12740736 CGGCAGCGGGATCGGCAGCACGTAGAGGGGGA-TCGGGCTGATCCTC-AGCTTACGCATTATGCC
1 CGGCAGCAAGATCGACAGCACGTAG-GGGGGACT-GGGCCGATCCTCGA-CTTACACATTATGCC
* * * * * *
12740799 TCTTCGGCCGGTTGAGCAC-CCGCACGCTCGTTTCATGGGTTGACTTCGACATACGAAGTTTATC
63 TCTCCGGCCAGCTGAGCACTCC-CACGCTCGTTTCATGGATTGACTTAGACATACGAAGTTCATC
12740863 CC-TAGTCTAAGC
127 CCAT-GTCTAAGC
12740875 ATACGAAGTT
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
170 27 0.24
171 86 0.76
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (170 bp):
CGGCAGCAAGATCGACAGCACGTAGGGGGGACTGGGCCGATCCTCGACTTACACATTATGCCTCT
CCGGCCAGCTGAGCACTCCCACGCTCGTTTCATGGATTGACTTAGACATACGAAGTTCATCCCAT
GTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCAGGAC
Found at i:12741205 original size:159 final size:159
Alignment explanation
Indices: 12740994--12741534 Score: 403
Period size: 159 Copynumber: 3.3 Consensus size: 159
12740984 CTCCGACCGA
* * * *
12740994 CTGAGCGCCAGCACGCCCGTTTCGTGGGTTGGCTTAGGCAT-CGGGAGTTCATTCCATGTCTAAT
1 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC-GGAGTTCATTCCATGTCTAAT
* * * * *
12741058 CCCTAGCCGGACCGAGGGTTGCGACTGTGAGATCGACAGCACGCA-GAGTGGGATCGGGCCGATC
65 CCCCAGCCGGACCGAGGGTTGCGACAGTAAGATCGACAGCACACAGGAG-GGGACCGGGCCGATC
* * * *
12741122 CCCAGCTTACGCATTATACCTCTTCGGTTGG
129 CCCAGCTTACACATTATACCTCTCCGGCTAG
* * *
12741153 C-GCAGTGCCCGTACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAA
1 CTG-AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCT-A
** * * * * * *
12741216 GAT-CGGA-TCGGACCGAGGGTTACGACAGTAAGATCGATAGCACATAGGAGGGGACCGGTCTGA
63 -ATCCCCAGCCGGACCGAGGGTTGCGACAGTAAGATCGACAGCACACAGGAGGGGACCGGGCCGA
* ** * *
12741279 TCCCCGGCTTGTACATTCTGCCTCTCCGGCTAG
127 TCCCCAGCTTACACATTATACCTCTCCGGCTAG
* * *
12741312 CTGAGCGCCCGCACGCTCATTTCGTGGGTT-AGCTTAGGTATACAGAGTTCATTCCATGTCTAAG
1 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATTCCATGTCTAAT
* * * * * *
12741376 CCCCAGCCGGACTGAAGGTTGTGGCAGTAGGACCGGCAGCGAGATCGACAGCACGCAGAGGGGGA
65 CCCCAGCCGGACCGAGGGTTGCGACAGTAAGATC-G-A-C-AG--C-ACA-CA-G--GA-GGGGA
* * ** * * * **
12741441 CTGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGG
118 CCGGGCCGATCCCCAGCTTACACATTATACCTCTCCGGCTAG
* * * *
12741483 CTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTCGGCATACGGAGTTCAT
1 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
12741535 CCCTAGTCTA
Statistics
Matches: 298, Mismatches: 60, Indels: 36
0.76 0.15 0.09
Matches are distributed among these distances:
157 1 0.00
158 8 0.03
159 180 0.60
160 12 0.04
161 3 0.01
163 2 0.01
165 1 0.00
166 3 0.01
167 1 0.00
168 1 0.00
170 2 0.01
171 83 0.28
172 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAATC
CCCAGCCGGACCGAGGGTTGCGACAGTAAGATCGACAGCACACAGGAGGGGACCGGGCCGATCCC
CAGCTTACACATTATACCTCTCCGGCTAG
Found at i:12741449 original size:673 final size:670
Alignment explanation
Indices: 12739860--12743365 Score: 3575
Period size: 671 Copynumber: 5.3 Consensus size: 670
12739850 CCATGTCTAA
* * * **
12739860 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCGGCAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCAGGATCGACA
* * * * * * *
12739925 GCACGCAGAGGGGATCAGG-CAGATACCCGACTTGCACATTCTGTCTCT-CGAGCC-GATTGAGC
66 GCACGTAGGGGGGA-CCGGTCTGATCCCCGACTTGCACATTCTGCCTCTCCG-GCCAG-CTGAGC
* * * * * * *
12739987 ACCAGCACGTTCGTTTCATGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTATAAGCCCCAGT
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * * *
12740052 TGGA-TCGAGGGTTATGGCAGCAGGACTGGCAGCGGGATCGGCAGCACGCAGAGGGGGACCGTGC
193 CGGACT-GAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGACTGGGC
* * * **
12740116 TGATCCTCGGCTTACGCATTATGCCTCTCCGACCGGCTGAGCGCCCACACGCTCATTTTGTGGGT
257 TGATCCTCGGCTTACGCATTATGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
12740181 TGACTTAGGCATACGAAGTTCAT-CCTCAGTCTAAGCATAC-AGAGTTCATTCCAGTCTAAGATC
322 TGACTTAGGCATACGAAGTTCATCCCT-AGTCTAAGCATACGA-AGTTCATTCCAGTCTAAGATC
* * * * * * * *
12740244 GGACCGAACCGAGGGTTGCGACAGCAGGATCGGTAGCACGCAGGGGGACCGGGTAGGTCCCCGGC
385 AGACCGGACCGAGGGTTACGGCAGCAAGATCGGTAGCACGCAGGGGGACCGGGTCGATCCCCGAC
* * * **
12740309 TTGCGCATTCTACCTCTCTGACCAACTGAGCGCCCGCATGCCCGTTTCAT--G--GG--TA---A
450 TTGCGCATTCTACCTCTCCGACCGACTGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGGCA
* * *
12740365 --GGGAGTTGATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGA-CTAGCAGC
515 TCGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGAGATCGA-CAGC
* ** **** * **
12740427 ACGTAGAGGGGGAGTGGGCCGATCTTTGGCTTGCGCATTATGCCT-TTCTGGCTGGCTCAGTGAT
579 ACGCAGAGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTTC-GGCTGGCTCAGTGCC
* * *
12740491 AGCACGCTCGTTTCATGGGTTGACTTAT
643 CGCACACTCATTTCATGGGTTGACTTAT
* * * *
12740519 GCGTACAGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTT-CGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCAGGATCGACA
* * * * *
12740583 GCACGTAGGGGGGACTGGGCCGATCCTCGACTTGCACATTCTGCCTCTCCGGCCAGCTGAGTGCT
66 GCACGTAGGGGGGACCGGTCTGATCCCCGACTTGCACATTCTGCCTCTCCGGCCAGCTGAGCGC-
* * * *
12740648 CC-CATGCTTGTTTCATGGATTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* *
12740712 GACTGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGGCAGCACGTAGAGGGGGA-TCGGGCTG
195 GACTGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGACT-GGGCTG
* * * *
12740776 ATCCTCAGCTTACGCATTATGCCTCTTCGGCCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTG
259 ATCCTCGGCTTACGCATTATGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * * *
12740841 ACTTCGACATACGAAGTTTATCCCTAGTCTAAGCATACGAAGTTCATTCTCAGTCTAAGATAAGA
324 ACTTAGGCATACGAAGTTCATCCCTAGTCTAAGCATACGAAGTTCATTC-CAGTCTAAGATCAGA
* * * * * *
12740906 CCGGACCGAGGGTTATGGTAGCAAGATCGGTAGCACGTAAGGGGGACCGAGTCGATTCCCGGCTT
388 CCGGACCGAGGGTTACGGCAGCAAGATCGGTAGCACG-CAGGGGGACCGGGTCGATCCCCGACTT
* * * * *
12740971 GCGCATTCTGCCTCTCCGACCGACTGAGCGCCAGCACGCCCGTTTCGTGGGTTGGCTTAGGCATC
452 GCGCATTCTACCTCTCCGACCGACTGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATC
* * * * * *
12741036 GGGAGTTCATTCCATGTCTAATCCCTAGCCGGACCGAGGGTTGCGACTGTGAGATCGACAGCACG
517 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGAGATCGACAGCACG
* * * * * *
12741101 CAGAGTGGGATCGGGCCGATCCCCAGCTTACGCATTATACCTCTTCGGTTGGCGCAGTGCCCGTA
582 CAGAGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTTCGGCTGGCTCAGTGCCCGCA
* *
12741166 CGCTCATTTCGTGGGTTGACTTAT
647 CACTCATTTCATGGGTTGACTTAT
* * * * * *
12741190 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGTAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCAGGATCGACA
* * * *
12741255 GCACATAGGAGGGGACCGGTCTGATCCCCGGCTTGTACATTCTGCCTCTCCGGCTAGCTGAGCGC
66 GCACGTAGG-GGGGACCGGTCTGATCCCCGACTTGCACATTCTGCCTCTCCGGCCAGCTGAGCGC
* * * *
12741320 CCGCACGCTCATTTCGTGGGTTAGCTTAGGTATACAGAGTTCATTCCATGTCTAAGCCCCAGCCG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * *
12741385 GACTGAAGGTTGTGGCAGTAGGACCGGCAGCGAGATCGACAGCACGCAGAGGGGGACTGGGCTGA
195 GACTGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGACTGGGCTGA
* * * *
12741450 TCC-CTGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTG
260 TCCTC-GGCTTACGCATTATGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* *
12741514 ACTTCGGCATACGGAGTTCATCCCTAGTCTAAGCATACGAAGTTCATTCTCAGTCTAAGATCAGA
324 ACTTAGGCATACGAAGTTCATCCCTAGTCTAAGCATACGAAGTTCATTC-CAGTCTAAGATCAGA
* * *
12741579 CCGGATCGAGGGTTACGGCAGCAAGATCGGTAGCACGCAGGGCAGACCGGGTCAATCCCCGACTT
388 CCGGACCGAGGGTTACGGCAGCAAGATCGGTAGCACGCAGGG-GGACCGGGTCGATCCCCGACTT
* * * * *
12741644 GCACATTCTGCCTCTCCGACGGTCTGAGCACCCGCACACCCGTTTCATGGGTTGGCCTAGGCATC
452 GCGCATTCTACCTCTCCGACCGACTGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATC
* * * *
12741709 GGGAGTTCATTCCATGTCTAAGCCCTAGCCAGG-CTGAGGGTTGTGGCAGCGAGACCGGCAGCAC
517 GGGAGTTCATTCCATGTCTAAGCCCCAGCC-GGACCGAGGGTTGTGGCAGCGAGATCGACAGCAC
12741773 GCAGAGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTTCGG-TCGGCTCAGTGCCCG
581 GCAGAGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTTCGGCT-GGCTCAGTGCCCG
12741837 CACACTCATTTCATGGGTTGACTTAT
645 CACACTCATTTCATGGGTTGACTTAT
* * ** * * * * * *** *
12741863 GTATACAGAGTTCATTCGTACTCTAAGATTGAACCGAACTGAGGGTTGCAATAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCAGGATCGACA
* * * * *
12741928 GTACGTAGGGGGGACCGATCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCT
66 GCACGTAGGGGGGACCGGTCTGATCCCCGACTTGCACATTCTGCCTCTCCGGCCAGCTGAGCGCC
** ** * *
12741993 CGTGCGCTCAATTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCTATGTCTAAGCCCCAGCCGG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
* * * * * *
12742058 ACCGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCGACAGCATGCAGATGGGGACCGGGTTGAT
196 ACTGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGACTGGGCTGAT
* * * * *
12742123 CCTCGACTTGCGCATTATGCCTCTTCGATCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGAC
261 CCTCGGCTTACGCATTATGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC
* * *
12742188 TTAGGCATACGGAGTTAATCCCTAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACC
326 TTAGGCATACGAAGTTCATCCCTAGTCTAAGCATACGAAGTTCATTCC-AGTCTAAGATCAGACC
* * ** * * ** *
12742253 AGACCGAGGGTTGCATCAGTAGGATCGACAGCACGCAGGGGGACCGGG-CTGATCCCCAACTTGC
390 GGACCGAGGGTTACGGCAGCAAGATCGGTAGCACGCAGGGGGACCGGGTC-GATCCCCGACTTGC
* * ** * * * * * *
12742317 GCATTCTACCCCTTCGGTCGGCTAAGCACCCGCACACCCGTTTCGTGCGTTGGCTTAGGGATAGG
454 GCATTCTACCTCTCCGACCGACTGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATCGG
* * * ** *
12742382 GAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCGGGATCGGTAGTACGCA
519 GAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGAGATCGACAGCACGCA
* * * * * **** **
12742447 GAAGGGGACCAGGCTGATCCCCGGCTTGCGCATTATGCCTCTGT-GGCTGGCTCAACATCCAAAC
584 GAGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCT-TCGGCTGGCTCAGTGCCCGCAC
* *
12742511 ACTCATTTTATGGCTTGACTTAT
648 ACTCATTTCATGGGTTGACTTAT
* * * * * *
12742534 GCATACGGAGTTCATTGCCAGTCTAAGATC-AGATCGGATCAAGGGTTACGGTAGCAGGATCTAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTACGGCAGCAGGATCGAC
* * * * * * * *
12742598 AACACGCAGGGGGGACCGGGTC-GATCCCTGACTTGCGCATTTTGCCTCTCCAGTCGGCTGAGCG
65 AGCACGTAGGGGGGACC-GGTCTGATCCCCGACTTGCACATTCTGCCTCTCCGGCCAGCTGAGCG
12742662 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCAGGC
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA-GC
* * * * * *
12742726 TGGA-TCGAGGGTTGTGGTAGCAAGACCGACAGCGGGATC-AGCAACACGCAGAGGGAGACTGGG
193 CGGACT-GAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGA-CAGCACGCAGAGGGGGACTGGG
* * * *
12742789 CTGATCCTCGGCTTACGCATTATGCCTTTTCGA-C--C-GA-----C-CTCTCT-G-CTCA---G
256 CTGATCCTCGGCTTACGCATTATGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
** * * *
12742839 TTG----A-GCACCCGCA---C-TCTC-AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
321 TTGACTTAGGCATACGAAGTTCATCCCTAGTCTAAGCATACGAAGTTCATT-CCAGTCTAAGATC
* * * * * * * ** * * * *
12742894 AAACCAGACCAAGGGTTGCGGCAGCAGGATCAGCAGCACGCAGGGGGGACTAGGCCGATCTCTGG
385 AGACCGGACCGAGGGTTACGGCAGCAAGATCGGTAGCACGCA-GGGGGACCGGGTCGATCCCCGA
* * ** * * *
12742959 CTTGCGCATTCTTCCTCTTCGACCGGTTGAGCACCCGTACGCCCGTTTCGT-GGTTGGCTTAGGC
449 CTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGGC
* ** ** * * *
12743023 ATAGGGAGTTCATTCCATGTCTAAGCCCCAATCAAACTGAGGGTTGTGGCAGCGGGACCGACAGC
514 ATCGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGAGATCGACAGC
* * * * * * ** * * *
12743088 ATGCAGAGGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGTTTCTTCGGCCGGCTCAGCGCCT
579 ACGCAGAGGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTTCGGCTGGCTCAGTGCCC
* *
12743153 GCACGCTCGTTTCATGGGTTGACTTAT
644 GCACACTCATTTCATGGGTTGACTTAT
* * * * * * *
12743180 GCATGCGAAGTTCATTCCTAGTCTAAGATC-AGACCAGACCGAGGGTTATGGCAGTAGGATTGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTACGGCAGCAGGATCGAC
* * * * * * ** * * *
12743244 AGCACGTAGGAGGGATCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCAGCCGGCTGAGTGC
65 AGCACGTAGGGGGGACCGGTCTGATCCCCGACTTGCACATTCTGCCTCTCCGGCCAGCTGAGCGC
*
12743309 CCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12743366 ATACAAAGTT
Statistics
Matches: 2409, Mismatches: 390, Indels: 108
0.83 0.13 0.04
Matches are distributed among these distances:
645 4 0.00
646 363 0.15
647 62 0.03
648 1 0.00
651 6 0.00
652 1 0.00
656 4 0.00
657 3 0.00
658 265 0.11
659 97 0.04
660 65 0.03
661 4 0.00
662 2 0.00
664 2 0.00
666 2 0.00
667 2 0.00
668 1 0.00
669 1 0.00
670 10 0.00
671 584 0.24
672 351 0.15
673 576 0.24
674 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (670 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCAGGATCGACA
GCACGTAGGGGGGACCGGTCTGATCCCCGACTTGCACATTCTGCCTCTCCGGCCAGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
ACTGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGACTGGGCTGAT
CCTCGGCTTACGCATTATGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC
TTAGGCATACGAAGTTCATCCCTAGTCTAAGCATACGAAGTTCATTCCAGTCTAAGATCAGACCG
GACCGAGGGTTACGGCAGCAAGATCGGTAGCACGCAGGGGGACCGGGTCGATCCCCGACTTGCGC
ATTCTACCTCTCCGACCGACTGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATCGGGA
GTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGAGATCGACAGCACGCAGA
GGGGGACCGGGCCGATCCCCAGCTTACGCATTATGCCTCTTCGGCTGGCTCAGTGCCCGCACACT
CATTTCATGGGTTGACTTAT
Found at i:12742228 original size:26 final size:26
Alignment explanation
Indices: 12742192--12742244 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12742182 GTTGACTTAG
12742192 GCATACGGAGTTAATCCCTAGTCTAA
1 GCATACGGAGTTAATCCCTAGTCTAA
* *
12742218 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTAATCCCTAGTCTAA
12742244 G
1 G
12742245 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCTAGTCTAA
Found at i:12742731 original size:158 final size:157
Alignment explanation
Indices: 12742273--12743365 Score: 447
Period size: 158 Copynumber: 6.8 Consensus size: 157
12742263 TTGCATCAGT
* * * * *
12742273 AGGATCGACAGCACGCA-GGGGGACCGGGCTGATCCCCAACTTGCGCATTCTACCCCTTCGGTCG
1 AGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTC-TCAGTCG
* * * *
12742337 GCTAAGCACCCGCACACCCGTTTCGTGCGTTGGCTTAGGGATAGGGAGTTCATTCCATGTCTAAG
65 GCTAAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* *
12742402 CCCCAGTC-GGATCGAGGGTTGTGGCAGC
130 -CCCAGGCTGGATCGAGGGTTGTGGTAGC
* ** * * * * ** *
12742430 GGGATCGGTAGTACGCAGAAGGGGACCAGGCTGATCCCCGGCTTGCGCATTATGCCTCTGTGGCT
1 AGGATCGACAGCACGCAG-GGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCAGTC-
* ** * ** * * *
12742495 GGCTCAA-CATCCAAACACTCATTTTATGGCTTGACTTATGCATACGGAGTTCATTGCCA-GTCT
64 GGCT-AAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCT
** * * **
12742558 AAGATCA-GATCGGATCAAGGGTTACGGTAGC
127 AAGCCCAGGCT-GGATCGAGGGTTGTGGTAGC
* * * *
12742589 AGGATCTACAACACGCAGGGGGGACCGGG-TCGATCCCTGACTTGCGCATTTTGCCTCTCCAGTC
1 AGGATCGACAGCACGCAGGGGGGACCGGGCT-GATCCCCGACTTGCGCATTATGCCTCT-CAGTC
* * *
12742653 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
64 GGCTAAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
12742718 GCCCAGGCTGGATCGAGGGTTGTGGTAGC
129 GCCCAGGCTGGATCGAGGGTTGTGGTAGC
* * * * * *
12742747 AAGACCGACAGCGGGATCAGCAACACGCAGAGGGAGACTGGGCTGATCCTCGGCTTACGCATTAT
1 -AG---G--ATC--GA-CAG---CACGCAG-GGGGGACCGGGCTGATCCCCGACTTGCGCATTAT
* * * *
12742812 GCCTTTTCGACCGACCTCTCTGCTCAGTTGAGCACCCG--CACTC---TC---AG-T--C-TAAG
53 GCC-TCTC-A--G-----TCGGCT-A----AGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGG
** ** ** * * * *
12742865 CATACGGAGTTCATTCCCA-GTCTAAGATCAAACCAGACCAAGGGTTGCGGCAGC
104 CATACGGAGTTCATT-CCATGTCTAAGCCCAGGCTGGATCGAGGGTTGTGGTAGC
** * * * * * * *
12742919 AGGATC-AGCAGCACGCAGGGGGGACTAGGCCGATCTCTGGCTTGCGCATTCTTCCTCTTC-GAC
1 AGGATCGA-CAGCACGCAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTC-TCAG-T
* * * * * *
12742982 CGGTTGAGCACCCGTACGCCCGTTTCGT-GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
63 CGGCTAAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* ** * *
12743046 AGCCCCA--ATCAAACTGAGGGTTGTGGCAGC
128 AG-CCCAGGCTGGATC-GAGGGTTGTGGTAGC
* * * * * * ** * *
12743076 GGGACCGACAGCATGCAGAGGGGGATCGGG-TCGATCCTCGGCTTGCGCATTATGTTTCTTCGGC
1 AGGATCGACAGCACGCAG-GGGGGACCGGGCT-GATCCCCGACTTGCGCATTATGCCTC-TCAGT
* * * * * * * * *
12743140 CGGCTCAGCGCCTGCACGCTCGTTTCATGGGTTGACTTATGCATGCGAAGTTCATTCC-TAGTCT
63 CGGCTAAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCT
** * ** * * * *
12743204 AAGATCAGACCAGACCGAGGGTTATGGCAGT
127 AAGCCCAGGCTGGATCGAGGGTTGTGGTAGC
* * * * * * * * * *
12743235 AGGATTGACAGCACGTAGGAGGGATCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCAGCCG
1 AGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCT-CAGTCG
* ** * *
12743300 GCTGAGTGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
65 GCTAAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
12743365 C
130 C
12743366 ATACAAAGTT
Statistics
Matches: 685, Mismatches: 184, Indels: 133
0.68 0.18 0.13
Matches are distributed among these distances:
146 8 0.01
148 3 0.00
151 5 0.01
153 1 0.00
154 1 0.00
155 1 0.00
156 6 0.01
157 69 0.10
158 253 0.37
159 201 0.29
160 14 0.02
162 1 0.00
163 4 0.01
164 2 0.00
166 3 0.00
167 2 0.00
168 1 0.00
170 7 0.01
171 31 0.05
172 47 0.07
173 4 0.01
174 1 0.00
175 1 0.00
176 1 0.00
179 7 0.01
182 4 0.01
184 7 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
AGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCAGTCGG
CTAAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
CCAGGCTGGATCGAGGGTTGTGGTAGC
Found at i:12744601 original size:26 final size:26
Alignment explanation
Indices: 12744571--12744623 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
12744561 GTTGGCTTAG
12744571 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
12744597 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
12744623 G
1 G
12744624 ATAAGACTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:12746887 original size:26 final size:26
Alignment explanation
Indices: 12746857--12746909 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12746847 GTTGACTTAG
12746857 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
12746883 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12746909 G
1 G
12746910 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12747237 original size:26 final size:26
Alignment explanation
Indices: 12747200--12747252 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12747190 GTTGGCTTAG
*
12747200 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
12747226 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
12747252 G
1 G
12747253 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:12748487 original size:26 final size:26
Alignment explanation
Indices: 12748438--12748490 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12748428 ATTGGCTTAG
* ***
12748438 GCATACGGAGTTCATTCTGTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12748464 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12748490 G
1 G
12748491 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12749318 original size:26 final size:26
Alignment explanation
Indices: 12749289--12749343 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
12749279 GGGTTGGCTC
* *
12749289 AAGCATACGGAGTTTATTCCATGTCT
1 AAGCATACGGAGTTCATTCCAAGTCT
12749315 AAGCATACGGAGTTCATTCCAAGTCT
1 AAGCATACGGAGTTCATTCCAAGTCT
12749341 AAG
1 AAG
12749344 ATCGAACCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (26 bp):
AAGCATACGGAGTTCATTCCAAGTCT
Found at i:12749705 original size:26 final size:26
Alignment explanation
Indices: 12749669--12749721 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12749659 GTTGACTTAG
*
12749669 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTAATTCCC-AGTCTAA
12749695 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
12749721 G
1 G
12749722 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:12750161 original size:158 final size:157
Alignment explanation
Indices: 12749695--12750511 Score: 656
Period size: 158 Copynumber: 5.2 Consensus size: 157
12749685 CCTAGTCTAA
* * * *
12749695 GCATACGGAGTTAATTCCCAGTCTAAGATCAGACCGGA-TCGAGGGTTGCGACAGTAAGATC-AG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAGGATCGA-
* * * * * * ** * *
12749758 TAGCACGCA-GAGGGGACCGAGCCAATCCCTGGCTTGCCCATTCTGCCTCTCCGGCCGGCTGAGC
63 CAGCACGCAGGA-GGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGATCGGCTCAAC
* * * *
12749822 ACCCGCACGCCCGTTTCTTGGGTTGGCTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** * * ** *
12749853 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTATGGCAGCAGGA-CTGG
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGCGGCAGCAGGATC-GA
* * * * *
12749916 CAGCACGCAGAGAGGGATCGGGCCGGTCCCCGGCTTGCACATTATGCCTCTTCGATCGGCTCAAT
63 CAGCACGCAG-GAGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGATCGGCTCAAC
*
12749981 GCCCGCACGCTCGTTTCGTGGGTTGACTTCTG
127 GCCCGCACGCTCGTTTCGTGGGTTGACTT-AG
* ** *
12750013 G-ATACGGAGTTCATTCTCAGTCTAAGATCAGATCGGACTGAGGGTTGCAACAGCAAGATCGACA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
12750077 GCACGCAGGAGGGACCGGGCCGATCCCTAGCTTGCGCATTCTGCCTATTCGGTCGGCTGAACGCC
65 GCACGCAGGAGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGATCGGCTCAACGCC
*
12750142 CGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGACTTAG
* ** * * * ** *
12750170 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGAACCGAGGGTTG-TGCAGTGGGACCGAC
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * *
12750233 AGCACGCAGAGGGGGAACAGGCCGATCCCTGACTTACGCATTATGCCTC-TCTGATCAGCTCAGC
64 AGCACGCAG-GAGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTC-GATCGGCTCAAC
* *
12750297 GCCCGCACGCTCGTTTTGTCGGTTGACTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
12750328 TCATAC-GAGTTCATTCCCAGTCTAAGATCAGACCAGA-TCGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAGGATCGAC
* * * * ** * * * *
12750391 AGCACGCAGGGGGGATCGGGTC-AGT-CCTCGACTCACGCATTCTACCTCTCCGACCGGCT-AAG
64 AGCACGCAGGAGGGACCGGGCCGA-TCCCT-GGCTTGCGCATTATGCCTCTTCGATCGGCTCAA-
* * *
12750453 CACCCGTC-TGCTCGTTTCGTGGGTTGGCTTAG
126 CGCCCG-CACGCTCGTTTCGTGGGTTGACTTAG
12750485 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
12750512 CATACGGAGT
Statistics
Matches: 524, Mismatches: 108, Indels: 54
0.76 0.16 0.08
Matches are distributed among these distances:
156 8 0.02
157 121 0.23
158 266 0.51
159 122 0.23
160 7 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAGGAGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGATCGGCTCAACGCCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:12750521 original size:26 final size:26
Alignment explanation
Indices: 12750485--12750535 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12750475 GTTGGCTTAG
12750485 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
12750511 GCATACGGAGTTCATTTCCAGTCTA
1 GCATACGGAGTTCATTTCCAGTCTA
12750536 GGATCGAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:12750869 original size:26 final size:26
Alignment explanation
Indices: 12750839--12750891 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12750829 TTTGACTTAG
12750839 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
12750865 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12750891 G
1 G
12750892 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12751343 original size:157 final size:155
Alignment explanation
Indices: 12750865--12751363 Score: 427
Period size: 159 Copynumber: 3.2 Consensus size: 155
12750855 CCTAGTCTAA
* * * * * *
12750865 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTTCCAGTCTAGGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
* * * * * *
12750930 ACATATAGAGGGGATCGGGCCGATCCCCGGCTTGTGCTTTCTGCCTCTCGAGCTGGCTAAGTGCC
66 GCATACAG-GGGGA-CCGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCGA-CCGGCTAAGTGCC
*
12750995 CGCACG-TTCGTTTCATGGGTTGGCTTAG
128 CGCACGCTT-GTTTCGTGGGTTGGCTTAG
* * * * *
12751023 GCATAGGGAGTTCA-TTCCATGTCTAAGCCAT-AG-CCGGACCAAGGGTTGTGGCAGC-GAGACC
1 GCATACGGAGTTCATTTCCA-GTCT-AG-GATCAGACCGGACCGAGGGTTGCGGCAGCAG-GATC
* * * * ** * *
12751084 GGCT-GCACATAGAGGGGGACCGAGTCGATCCTCGGCCAGCGCATTATGCCTCTTCGACCGGCTC
62 -GATAG--CATACAGGGGGACCG-GCCGATCCCCGGCTTGCGCATTCTGCCTC-TCGACCGGCTA
* * * * *
12751148 AGCGCCCGCACGCTCGTTTCGTGGGTTGACATAT
122 AGTGCCCGCACGCTTGTTTCGTGGGTTGGCTTAG
* * * *
12751182 GCATACGGAGTTCATTTCCAGTGTAGGATCGGATCGGACCGAGGGTTGCGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTTCCAGTCTAGGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
* * * *
12751247 GCATACAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACGGGCTGAGTGCCC
66 GCATACAGGGGGACC-GGCCGATCCCCGGCTTGCGCATTCTGCCTCT-CGACCGGCTAAGTGCCC
*
12751312 ACACGCTTGTTTCGTGGGTTGGCTTAG
129 GCACGCTTGTTTCGTGGGTTGGCTTAG
* *
12751339 GCATACAGATTTCA-TTCCATGTCTA
1 GCATACGGAGTTCATTTCCA-GTCTA
12751364 AGCATACGGA
Statistics
Matches: 265, Mismatches: 58, Indels: 37
0.74 0.16 0.10
Matches are distributed among these distances:
156 6 0.02
157 94 0.35
158 46 0.17
159 100 0.38
160 19 0.07
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTTCCAGTCTAGGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
GCATACAGGGGGACCGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCGACCGGCTAAGTGCCCGC
ACGCTTGTTTCGTGGGTTGGCTTAG
Found at i:12752102 original size:26 final size:25
Alignment explanation
Indices: 12752055--12752104 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
12752045 GTTGACTTAG
*
12752055 GCATACGGAGTCATCCCTAGTCTAT
1 GCATACGAAGTCATCCCTAGTCTAT
12752080 GCATACGAAGTTCATTCCC-AGTCTA
1 GCATACGAAG-TCA-TCCCTAGTCTA
12752105 AAATCAGACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 9 0.41
26 9 0.41
27 4 0.18
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (25 bp):
GCATACGAAGTCATCCCTAGTCTAT
Found at i:12752389 original size:159 final size:157
Alignment explanation
Indices: 12752115--12752581 Score: 465
Period size: 159 Copynumber: 3.0 Consensus size: 157
12752105 AAATCAGACT
* * * * ** * * * *
12752115 GGACCGAGGGTTGCGGTAGTAGGATCGGTAGCACGC-AGCAGGGATCGGGTCGATCCCCGGCTTG
1 GGACCAAGGGTTGCAGCAGCAGGATCGACAGCACGCAAG-AGGGACCGAGCCGATCCCTGGCTTG
* * * * * * * *
12752179 CGCATTCTACCTCTCCGACCGGTTAAGTGCCTGCTCACCCATTTTATGGGTTGGCTTAGGGATAG
65 CGCATTCTGCCTCTCCGACCGGCTAAGTGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATAG
*
12752244 GTAGTTCATTCCATGTCTAAGCCCCAGTC
130 G-AGTTCATTCCATGTCTAAGCCCCAATC
** *
12752273 GGACCAAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGAGCCGATCCCTGGCTTG
1 GGACCAAGGGTTGCAGCAGCAGGATCGACAGCACGCA-AGAGGGACCGAGCCGATCCCTGGCTTG
* * * *
12752338 TGCATTATGCCTCTCCGACCGGCTCAGTGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATAC
65 CGCATTCTGCCTCTCCGACCGGCTAAGTGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATA-
* ** *
12752403 GAAGTTCATTCCCA-GTCTAAGATCGAATC
129 GGAGTTCATT-CCATGTCTAAGCCCCAATC
* * * * *
12752432 TGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGTAAGAGGGACCGGGCCGATCCCCT-GCTTG
1 GGACCAAGGGTTGCAGCAGCAGGATCGACAGCACGCAAGAGGGACCGAGCCGAT-CCCTGGCTTG
* * ** * * *
12752496 CACATTCTGCCTCTCTGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTT-GCTTAGGCATAC
65 CGCATTCTGCCTCTCCGACCGGCTAAGTGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATA-
12752560 GGAGTTCATTCCATGTCTAAGC
129 GGAGTTCATTCCATGTCTAAGC
12752582 ATACAGAGTT
Statistics
Matches: 255, Mismatches: 48, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
156 3 0.01
157 27 0.11
158 93 0.36
159 126 0.49
160 6 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (157 bp):
GGACCAAGGGTTGCAGCAGCAGGATCGACAGCACGCAAGAGGGACCGAGCCGATCCCTGGCTTGC
GCATTCTGCCTCTCCGACCGGCTAAGTGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATAGG
AGTTCATTCCATGTCTAAGCCCCAATC
Found at i:12752590 original size:26 final size:26
Alignment explanation
Indices: 12752554--12752606 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12752544 GGTTGCTTAG
*
12752554 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
12752580 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12752606 G
1 G
12752607 ATTGGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12752952 original size:26 final size:26
Alignment explanation
Indices: 12752922--12752974 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12752912 GTTGACTTAG
12752922 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12752948 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12752974 G
1 G
12752975 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12753154 original size:355 final size:359
Alignment explanation
Indices: 12752453--12753157 Score: 827
Period size: 355 Copynumber: 2.0 Consensus size: 359
12752443 TGCAGTAGCA
* * *
12752453 GGATCGACAGCACGTAAGAGGGACCGGGCCGATCCCCTGCTTGCACATTCTGCCTCTCTGGTCGG
1 GGATCGACAGCACGCAAGAGGGACCGGGCCGATCCCCTGCTTGCACATTATGCCTCTCCGGTCGG
* * *
12752518 CTGAGTGCCCGCACGCTCGTTTCGTGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGCTTAGGCATACGGAGTTCATCCCATGTCTAAGCA
** *
12752583 TACAGAGTTCATTCCCAGTCTAAGATTGGACCAAATTGAGGGTTGCAGCAGCAAGTCCAGCAACA
131 TACAGAGTTCATTCCCAGTCTAAGATCAGACCAAATCGAGGGTT--AGCAG--AGT-CAG--ACA
* * ** * * **
12752648 GGATCGACAGCACGTAGGGGAGGATCGGGCCGATCCTTAGCTTGCGTATTCTGCCTCTTTGGCTG
189 GGATCGACAGCACGCAGGGGAGGACCAAGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCGGCTG
** * * * *
12752713 GTTGAGCACCCATACGCTCATTTCGTGAGTTGGCTTAGGCATACAGAGTTCATTCCATGCCTAAG
254 ACTGAGCACCCACACGCCCATTTCATGAGTTGGCTTAGGCATACAGAGTTCATTCCATGCCTAAA
12752778 CCCCAGCCAGACCAAGGGTTGTGGCAGCAAGACCGACAGCG
319 CCCCAGCCAGACCAAGGGTTGTGGCAGCAAGACCGACAGCG
* *** * *
12752819 GGATCGACAGCACGCAGAGGGGGACCGGTTTGAT-CCCTGGCTTGCGCATTATGCCTCTCCGGTT
1 GGATCGACAGCACGCA-AGAGGGACCGGGCCGATCCCCT-GCTTGCACATTATGCCTCTCCGGTC
* *
12752883 GGTTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTA
64 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG-CTTAGGCATACGGAGTTCAT-CCCATGTCTA
* **
12752947 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTT-GC-G-GT-AG-CAGGA
127 AGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAATCGAGGGTTAGCAGAGTCAGACAGGA
* *
12753007 TCGACAGCACGCAGGGG-GGACCAAGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGG-TCGAC
192 TCGACAGCACGCAGGGGAGGACCAAGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCGGCT-GAC
* * ** *
12753070 TGAGC-CCACGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAAC
256 TGAGCACC-CACACGCCCATTTCATGAGTTGGCTTAGGCATACAGAGTTCATTCCATGCCTAAAC
* **
12753134 CCCAGCCGGACTGAGGGTTGTGGC
320 CCCAGCCAGACCAAGGGTTGTGGC
12753158 TGTGGGACTG
Statistics
Matches: 289, Mismatches: 44, Indels: 23
0.81 0.12 0.06
Matches are distributed among these distances:
354 3 0.01
355 106 0.37
356 21 0.07
359 2 0.01
361 2 0.01
364 1 0.00
365 2 0.01
366 19 0.07
367 63 0.22
368 67 0.23
369 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (359 bp):
GGATCGACAGCACGCAAGAGGGACCGGGCCGATCCCCTGCTTGCACATTATGCCTCTCCGGTCGG
CTGAGCGCCCGCACGCTCGTTTCATGGGTTGCTTAGGCATACGGAGTTCATCCCATGTCTAAGCA
TACAGAGTTCATTCCCAGTCTAAGATCAGACCAAATCGAGGGTTAGCAGAGTCAGACAGGATCGA
CAGCACGCAGGGGAGGACCAAGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCGGCTGACTGAGC
ACCCACACGCCCATTTCATGAGTTGGCTTAGGCATACAGAGTTCATTCCATGCCTAAACCCCAGC
CAGACCAAGGGTTGTGGCAGCAAGACCGACAGCG
Found at i:12753427 original size:159 final size:157
Alignment explanation
Indices: 12752948--12753449 Score: 509
Period size: 158 Copynumber: 3.2 Consensus size: 157
12752938 CCCAGTCTAA
* * *
12752948 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* *** * * * *
12753012 AGCACGC-AGGGGGGACCAAGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGC-
65 AGCATGCTAGGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGG-CGGCTGAGCG
*
12753075 CCACGCACGCCCATTTCATGGGTTGGCTTAG
129 CC-CGCACG-CTATTTCATGGGTTGGCTTAG
* * * * **
12753106 GCATAGGGAGTTCATTCCATGTCTAA-ACCCCAG-CCGGACTGAGGGTTGTGGCTGTGGGA-CTG
1 GCATACGGAGTTCATTCCATGTCTAAGA--TCAGACCGGACCGAGGGTTGTGGCAGCAGGATC-G
* ** * * * * * *
12753168 GCAGCATG-TAAAGGGGA-TCGGGTCGATCCCCAGCTTACGCATTATGCCTTTTCGGCTGGCTCA
63 ACAGCATGCTAGGGGGGACT-GGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGC-GGCTGA
* * * *
12753231 GTGCTCGCACGCTCATTTCATGGGTTGACTTAT
126 GCGCCCGCACGCT-ATTTCATGGGTTGGCTTAG
*
12753264 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* *
12753328 AGCATGCTGGGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCAGCAGGCTGAGCG
65 AGCATGCTAGGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGC-GGCTGAGCG
*
12753393 CCCGCACGCTAGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCTA-TTTCATGGGTTGGCTTAG
12753423 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
12753450 TATACGGAGT
Statistics
Matches: 272, Mismatches: 55, Indels: 33
0.76 0.15 0.09
Matches are distributed among these distances:
157 10 0.04
158 161 0.59
159 100 0.37
160 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCATGCTAGGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCGGCTGAGCGCC
CGCACGCTATTTCATGGGTTGGCTTAG
Found at i:12753473 original size:26 final size:26
Alignment explanation
Indices: 12753425--12753475 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12753415 TGGCTTAGGC
*
12753425 ATACGGAGTTCATTCCATGTCTAAGT
1 ATACGGAGTTCATTCCATCTCTAAGT
12753451 ATACGGAGTTCATTCCCA-CTCTAAG
1 ATACGGAGTTCATT-CCATCTCTAAG
12753476 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATCTCTAAGT
Found at i:12754167 original size:26 final size:26
Alignment explanation
Indices: 12754131--12754183 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12754121 GTTGACTTAG
12754131 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
12754157 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12754183 G
1 G
12754184 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12760874 original size:158 final size:157
Alignment explanation
Indices: 12760641--12761193 Score: 592
Period size: 158 Copynumber: 3.5 Consensus size: 157
12760631 TCTTCGGCCC
* * * * * *
12760641 GCCTCTTCGGTCGGCTGAGCGCCCACACGTTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCA
1 GCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * *
12760706 TCCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCAGGATCGACAGCAAGCAGGGGGGA
66 TTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAGGATCGATAGC-AGCAGGGGGGA
* *
12760771 CCGGGCCGATCCTCGGCTTGCGCATTCT
130 TCGGGCCGATCCTCGGCTTGTGCATTCT
** * * *
12760799 GCCTCTCCGGTCAACTGAGCGCCCGCACGCCCATTTCGTGGGTTAACTTAGGCATAGGGAGTTCA
1 GCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* ** ** ** *
12760864 TTTCGTGTCTAAGCCCTAG-CCGGACTGAGGGTTGTGGCAGCGGGATCGATAGCATGCAGAGGGG
66 TTCCCAGTCTAAGATC-AGACCGGACTGAGGGTTACGGCAGCAGGATCGATAGCA-GCAG-GGGG
* * *
12760928 GATCGGGTCGATCCTCGGCTTATGCATTAT
128 GATCGGGCCGATCCTCGGCTTGTGCATTCT
* * * * * ** * * * *
12760958 GCCTCTTCGGCCGGCTTAACGCCTGCACTTTCGTTTCGTGGGCTGACTAATGCATACGGAGTTCA
1 GCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
12761023 TTCCCAGTCTAAGATCATACCGGACTGAGGGTTACGGCAGTAGGATCGATAGC-GCATAGGGGGG
66 TTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAGGATCGATAGCAGC--AGGGGGG
* *
12761087 ATCGAGCCGATCCCCGGCTTGTGCATTCT
129 ATCGGGCCGATCCTCGGCTTGTGCATTCT
* * * *
12761116 GCCTCTCC-GACTGGCTGAGCGCCCGCACGCTCATTTCGTTGGTTGGCTTAGGCATACGAAGTTC
1 GCCTCTCCGGTC-GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
12761180 ATT-CCATGTCTAAG
65 ATTCCCA-GTCTAAG
12761194 CATATGGAGT
Statistics
Matches: 316, Mismatches: 71, Indels: 16
0.78 0.18 0.04
Matches are distributed among these distances:
157 8 0.03
158 185 0.59
159 123 0.39
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAGGATCGATAGCAGCAGGGGGGAT
CGGGCCGATCCTCGGCTTGTGCATTCT
Found at i:12762187 original size:158 final size:158
Alignment explanation
Indices: 12761899--12762399 Score: 487
Period size: 158 Copynumber: 3.2 Consensus size: 158
12761889 CCCTGTCTAA
** ** *
12761899 GCATACGGAGTTCATTCC-TAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCCCACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * ** ** *
12761963 AGCATGCAAGGGGGA-CCGAGCCGATCTTTGGCTTGCGCATTCTGCCTCTTTGGTCAACTGAGCA
65 AGCAAGCAGGGGGGATCAG-GCCGATCCTCGGCTTGCGCATTATGGCTCTCCGACCGACTGAGCA
12762027 CCCGCACGCTCGTTTCAG-GGGTTGGCTTAG
129 CCCGCACGCTCGTTTC-GTGGGTTGGCTTAG
* * * ** *
12762057 GCATAGGGAGTTCATTCCATGTCTAAG-TCCCAGCCGGACCGAGGGTTGTGGCAGTGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAGATCCCA-CCAGACCGAGGGTTGCGGCAGCAGGATC-GA
* * * *
12762120 CAGCAAGCAGAGGGGGA-CCGGGCGATCC-CTGGCTTGCGCATTATGGCTCTCCGACCGGCTTAG
64 CAGCAAGCAG-GGGGGATCAGGCCGATCCTC-GGCTTGCGCATTATGGCTCTCCGACCGACTGAG
* * *
12762183 CACCCGCACGCTCATTTGGTGGGTTGACTTAG
127 CACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** *
12762215 GCATACGAAGTTAATTCCCA-GCCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCCCACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * *
12762279 AGCACGTAGGGGGGATCAGGCCGATCCTCGGCTTGCGCATTCTGTCTCTCTGATCGACTGAGCGC
65 AGCAAGCAGGGGGGATCAGGCCGATCCTCGGCTTGCGCATTATGGCTCTCCGACCGACTGAGCAC
12762344 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
12762373 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
12762400 CATATAGAGT
Statistics
Matches: 276, Mismatches: 55, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
157 14 0.05
158 244 0.88
159 18 0.07
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCCCACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCAAGCAGGGGGGATCAGGCCGATCCTCGGCTTGCGCATTATGGCTCTCCGACCGACTGAGCACC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12762780 original size:26 final size:26
Alignment explanation
Indices: 12762740--12762792 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12762730 GTTGACTCAG
* *
12762740 GCATACTGAGTTCATCCCCAGTCTAA
1 GCATACAGAGGTCATCCCCAGTCTAA
*
12762766 GCATACAGAGGTCATTCCCAGTCTAA
1 GCATACAGAGGTCATCCCCAGTCTAA
12762792 G
1 G
12762793 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGGTCATCCCCAGTCTAA
Found at i:12763291 original size:26 final size:26
Alignment explanation
Indices: 12763241--12763293 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12763231 GTTGGCTTAG
**
12763241 GCATACAAAGTTCATTCCCTGTCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
*
12763267 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
12763293 G
1 G
12763294 ATTTTGATCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAATCTAA
Found at i:12764287 original size:158 final size:159
Alignment explanation
Indices: 12764020--12764521 Score: 367
Period size: 158 Copynumber: 3.1 Consensus size: 159
12764010 CAGACCGGAT
* * * ** * * * *
12764020 CGAGGGTTGTGGTAGCA--GGATCGACAGTACGTAGTGGGGATTGGGTCGATCCCCGGCTTGCGC
1 CGAGGGTTGTGGCAGCAGCGGATCGACAGCACGCAG-GGGGACCGAGCCGATCCCTGGCTCGCGC
* ** * * * * * * *
12764083 ATTCTGCCTCTCC-GACTGGTTGAGCACCAGCAAGCCCGTTTTGTGGGTTGGCTTAGGCATAGGG
65 ATTCTGCCTCTCCAG-CCGACTCAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
12764147 AGTTCATTCCATGTCTAAGCCCCAGTCGAAC
129 AGTTCATTCCATGTCTAAGCCCCAGTCGAAC
* *
12764178 CGAGGGTTGTGGCAGC-G-GGATCGACAGC-CTGCAGAGGGGGATCGGGCCGATCCCTGGCTCGC
1 CGAGGGTTGTGGCAGCAGCGGATCGACAGCAC-GC--AGGGGGACCGAGCCGATCCCTGGCTCGC
* * * ** * **
12764240 GTATT-TGCCTCTCCGGCCGGCTCAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATA
63 GCATTCTGCCTCTCCAGCCGACTCAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
* ** *
12764304 TAGTTCATT-CATAGTCTAAG-ATCGGATC-AGAC
128 GAGTTCATTCCAT-GTCTAAGCCCCAG-TCGA-AC
* * *
12764336 TGAGGGTTACGATAACAGGACCAGCAGCCGGATCGGCAGCACGCAGGGGGACCGAGCGGATCCCT
1 CGAGGGTT--G-T----GG--CAGCAG-CGGATCGACAGCACGCAGGGGGACCGAGCCGATCCCT
* * * * * ** *
12764401 GGCTTGCGCATTCTGCCTCTCCAGCCGATTGAGCACCTGCACTCTTGTTTCATGGGTTGGCTTAG
56 GGCTCGCGCATTCTGCCTCTCCAGCCGACTCAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAG
*
12764466 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC
121 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGAAC
12764505 CGAGGGTTGTGGCAGCA
1 CGAGGGTTGTGGCAGCA
12764522 AGACCGGCAA
Statistics
Matches: 267, Mismatches: 52, Indels: 48
0.73 0.14 0.13
Matches are distributed among these distances:
157 7 0.03
158 96 0.36
159 27 0.10
160 8 0.03
161 1 0.00
162 2 0.01
165 2 0.01
166 1 0.00
167 5 0.02
168 29 0.11
169 71 0.27
170 17 0.06
171 1 0.00
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (159 bp):
CGAGGGTTGTGGCAGCAGCGGATCGACAGCACGCAGGGGGACCGAGCCGATCCCTGGCTCGCGCA
TTCTGCCTCTCCAGCCGACTCAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGCCCCAGTCGAAC
Found at i:12764546 original size:169 final size:164
Alignment explanation
Indices: 12764066--12764547 Score: 399
Period size: 169 Copynumber: 2.9 Consensus size: 164
12764056 GGGATTGGGT
* * * * *
12764066 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGTTGAGCACCAGCAAGCCCGTTTTGTGGGT
1 CGATCCCTGGCTTGCGCATTCTGCCTCTCCG-CCGGTTGAGCACCAGCACGCTCGTTTCGTGGGT
* *
12764131 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTTGTGGCAGC-G
65 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAG
* * * *
12764195 ---GG-ATCGA-CAGCCTGCA-GAGGGGGATCGGGC
130 ACCGGCAACGATCAG-CAGCACGAGGGGGACCGAGC
* * * * ** * *
12764225 CGATCCCTGGCTCGCGTATT-TGCCTCTCCGGCCGGCTCAGTGCCCGCACGCTCATTTCGTGGGT
1 CGATCCCTGGCTTGCGCATTCTGCCTCTCC-GCCGGTTGAGCACCAGCACGCTCGTTTCGTGGGT
* *** ** * * * ** ** *
12764289 TGACTTAGGCATATATAGTTCATT-CATAGTCTAAG-ATCGGATCAGACTGAGGGTTACGATAAC
65 TGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGC
* * *
12764352 AGGACCAGCAGCCGGATCGGCAGCACGCAGGGGGACCGAGC
128 A-GACCGGCA-AC-GATCAGCAGCACG-AGGGGGACCGAGC
* * * * * *
12764393 GGATCCCTGGCTTGCGCATTCTGCCTCTCCAGCCGATTGAGCACCTGCACTCTTGTTTCATGGGT
1 CGATCCCTGGCTTGCGCATTCTGCCTCTCC-GCCGGTTGAGCACCAGCACGCTCGTTTCGTGGGT
12764458 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAA
65 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGC-A
12764523 GACCGGCAACAAGATCAGCAGCACG
129 GACCGGCAAC--GATCAGCAGCACG
12764548 TAGAGGGGGA
Statistics
Matches: 238, Mismatches: 66, Indels: 28
0.72 0.20 0.08
Matches are distributed among these distances:
157 5 0.02
158 73 0.31
159 18 0.08
160 1 0.00
163 1 0.00
164 1 0.00
165 1 0.00
166 6 0.03
167 3 0.01
168 29 0.12
169 94 0.39
170 6 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (164 bp):
CGATCCCTGGCTTGCGCATTCTGCCTCTCCGCCGGTTGAGCACCAGCACGCTCGTTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGA
CCGGCAACGATCAGCAGCACGAGGGGGACCGAGC
Found at i:12764679 original size:26 final size:26
Alignment explanation
Indices: 12764650--12764700 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12764640 GTTGACTTAG
*
12764650 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12764676 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
12764701 TGATCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12765263 original size:26 final size:26
Alignment explanation
Indices: 12765227--12765280 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
12765217 GTTGACTTAG
12765227 GCATACGGAGTTCAACCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
* **
12765253 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
12765279 GC
1 GC
12765281 TTGAATCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCCAGTCTAA
Found at i:12766767 original size:26 final size:25
Alignment explanation
Indices: 12766731--12766782 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
12766721 GTTGGCTTAG
12766731 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGT-TAA
* *
12766757 GCATATGGAGTTCATTCCCAGTTAA
1 GCATACGGAGTTCATCCCCAGTTAA
12766782 G
1 G
12766783 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCCAGTTAA
Found at i:12767137 original size:159 final size:158
Alignment explanation
Indices: 12766757--12767138 Score: 389
Period size: 159 Copynumber: 2.4 Consensus size: 158
12766747 CCCAGTCTAA
* * * *
12766757 GCATATGGAGTTCATTCCCAGT-TAAGATCGAACCGGACCGAGGGTTGCGACAGCAAGATCGATA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTGCGACAGCAGGATCGACA
* * * * * * * *
12766821 GCACGCAGGGTAGATCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTTCGGTCGGCTGAGCACC
66 GCACGCAGGGGAGATCGAGCCAATCCCCAGCTTACGCATTATGACTCTTCGGTCGGCTCAACACC
** *
12766886 CGTACGCCCATTTCGTGGGTTGGCTTAG
131 CACACGCCCATTTCGTGGGTTGACTTAG
** * * * * *
12766914 GCATA-GGTAGTTCATT-CCATGTCTAAGCCCCAGTCGGA-TCGAGGGTTG-TAGCAGCGGGACC
1 GCATATGG-AGTTCATTCCCA-GTCTAAGATCGAATCGGACT-GAGGGTTGCGA-CAGCAGGATC
* * * *
12766975 GACAGCATGCAGAGGGGGATCGAGCCAATCCCTAGCTTGCGCATTATGACTC-TCTGGTCGGCTC
62 GACAGCACGCAG-GGGAGATCGAGCCAATCCCCAGCTTACGCATTATGACTCTTC-GGTCGGCTC
* * *
12767039 AACGCCCACACGCTCGTTTCGTGGGTTGACTTAG
125 AACACCCACACGCCCATTTCGTGGGTTGACTTAG
* *
12767073 GCATATGGAGTTCATTCCCAGTCTAAGATCGAATCAGACTGAGGGTTGCGATAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTGCGACAGCAGGATCGACA
12767138 G
66 G
12767139 TACACGGGGG
Statistics
Matches: 176, Mismatches: 38, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
156 5 0.03
157 16 0.09
158 37 0.21
159 111 0.63
160 7 0.04
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGGGGAGATCGAGCCAATCCCCAGCTTACGCATTATGACTCTTCGGTCGGCTCAACACC
CACACGCCCATTTCGTGGGTTGACTTAG
Found at i:12767744 original size:26 final size:26
Alignment explanation
Indices: 12767715--12767767 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12767705 GTTGACTTAG
12767715 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
12767741 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12767767 G
1 G
12767768 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12768198 original size:158 final size:157
Alignment explanation
Indices: 12767741--12768239 Score: 528
Period size: 159 Copynumber: 3.2 Consensus size: 157
12767731 CCCAGTCTAA
**
12767741 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGGTG
1 GCATACGGAGTTCATTCATAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGG-TC--TG
* * * * * *
12767806 GCA-CACG-GGGTGGATCGGGTTGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCA
63 ACAGCACGAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCG
* *
12767869 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * * *
12767899 GCATAGGGAGTTCATTCCAT-GTCTAAG-CCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATT-CATAGTCTAAGATCGGA-TCGGACCGAGGGTTGCGGCAGCAGGTCTGA
* * * * * *
12767962 CAGCACGCAGAGGGGGACCGGGCCAATCCCCGGGTTGCGCATTATGCCTTTCCGGCCGGCTT-AG
64 CAGCACG-AG-GGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGG-TTGAG
* * *
12768026 CGCCCGCACACTCGTTTCGTGGGTTGACTTAT
126 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
12768058 GCATACGAAGTTCATTCATAGTGTAAGATCGGATCAGACCAAGGGTTGCGGCAGTC-GGTTTGAC
1 GCATACGGAGTTCATTCATAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAG-CAGGTCTGAC
*
12768122 AGCACGTAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGC
65 AGCACG-AGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGC
*
12768187 CCACACGCTCG-TTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
12768215 GCATACGGAGTTCATTCCAT-GTCTA
1 GCATACGGAGTTCATT-CATAGTCTA
12768240 CGCATACGGA
Statistics
Matches: 274, Mismatches: 55, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
155 3 0.01
156 4 0.01
157 39 0.14
158 106 0.39
159 117 0.43
160 5 0.02
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCATAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGTCTGACA
GCACGAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12769669 original size:26 final size:26
Alignment explanation
Indices: 12769633--12769682 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
12769623 GGCTTAGGCA
12769633 TACGGAGTTCATT-CCACGTCTAAGCG
1 TACGGAGTTCATTCCCA-GTCTAAGCG
12769659 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
12769683 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:12769832 original size:196 final size:196
Alignment explanation
Indices: 12769374--12769895 Score: 667
Period size: 197 Copynumber: 2.7 Consensus size: 196
12769364 CTTCAGCTTC
* **
12769374 CGCATTCTGCCTCTCCGGTTGGTTGAGCGCCCA-CACGCTCGTTTCGTGGGTTGGCTTAGGCATA
1 CGCATTCTGCCTCTCC-GATGACTGAGCG-CCAGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
* * * * * *
12769438 CAGAGTTTATTACATGTCTAAGCATACAGAGTTCATTCTCAGTCTAAGATCGGACTAGACTGAGG
64 CGGAGTTCATTCCACGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGG
* * * * * * *
12769503 GTTGCAGTAGTAGGACCAGCAGTAGGATCGATAGCACGCAAGGGGTGACCGAGCTGATCCCCGAC
129 ATTGCAGCAGCAGGACCAGCAGCAGGATCGACAGCACGCAAGGGGGGACCGAGCCGATCCCCGAC
12769568 TTA
194 TTA
* * *
12769571 CGTATTCTACCTCTCCGATCGACTGAGTGCCCAG-ACGCTCGTTTCGTGGGTTGGCTTAGGCATA
1 CGCATTCTGCCTCTCCGAT-GACTGAGCG-CCAGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
* * **
12769635 CGGAGTTCATTCCACGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGTTCGAG
64 CGGAGTTCATTCCACGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACT-GAG
* *
12769699 GATTGCAGCAGCAGGACCAGCAGCATGATCGACAGCACGC-AGGGGGGATCGAGCCGATCCCCGA
128 GATTGCAGCAGCAGGACCAGCAGCAGGATCGACAGCACGCAAGGGGGGACCGAGCCGATCCCCGA
12769763 CTTA
193 CTTA
* *
12769767 CGCATTCTGCCTCTCCGACTGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
1 CGCATTCTGCCTCTCCGA-TGACTGAGCGCCAGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * *
12769832 GGAGTTCA-TCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTATGATCAGACCAGCCTGAGG
65 GGAGTTCATTCCAC-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGG
12769896 GTTGTGGAAG
Statistics
Matches: 281, Mismatches: 37, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
195 7 0.02
196 132 0.47
197 142 0.51
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (196 bp):
CGCATTCTGCCTCTCCGATGACTGAGCGCCAGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCACGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGAT
TGCAGCAGCAGGACCAGCAGCAGGATCGACAGCACGCAAGGGGGGACCGAGCCGATCCCCGACTT
A
Found at i:12769862 original size:26 final size:26
Alignment explanation
Indices: 12769826--12769876 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12769816 GTTGACTTAG
*
12769826 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
12769852 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
12769877 TGATCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12770883 original size:26 final size:26
Alignment explanation
Indices: 12770847--12770897 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12770837 GTTGACCTAA
12770847 GCATACAGAGTTCATCCCCAGTCTAG
1 GCATACAGAGTTCATCCCCAGTCTAG
* *
12770873 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
12770898 AAATCAGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAG
Found at i:12771448 original size:317 final size:316
Alignment explanation
Indices: 12770870--12771669 Score: 978
Period size: 317 Copynumber: 2.5 Consensus size: 316
12770860 ATCCCCAGTC
* * *
12770870 TAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAGGATC-
* * * * *
12770935 GTGGCACGCAGGGTGGATCGGGTTGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
65 GTAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGT
* * * *
12771000 ACCTGTACGCTCGTTTCATGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
130 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * *
12771065 CGGACCGAGGGTTGTGGCAACGGGACTGGCAACATGCAGAGGGGGACTGAATCGATCCCCGGCTT
195 CGGACCGAGGGTTGTGGCAACGGGACTGACAACACGCAGAGGGGGACTGAACCAATCCACGGCTT
* * * * ** *
12771130 GTGCATTATGCCTCTCCGGTTGGCTTAACGCCCGCATGCTCGTTTCATGGCTAGACT
260 GTGCATTACGCCTCTCCGATCGGCTCAACGCCCGCACACTCATTTCATGGCTAGACT
* * * * *
12771187 TAGGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGA-CTGAGGGTTGTGACAGTAGGATC
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATC-GAGGGTTGTGGCAGCAGGATC
* * * *
12771251 AGCAGCACGCAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGTTAAG
65 -GTAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAG
* *
12771316 TGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
129 TGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
* ** * * *
12771381 TCGGACCGAGGGTTGTGGCAGTGGGA-TCGACAGCACGCAGAGGGGGA-TCGAGCCAATCCATGG
194 CCGGACCGAGGGTTGTGGCAACGGGACT-GACAACACGCAGAGGGGGACT-GAACCAATCCACGG
* * * * * * * *
12771444 CTTGTGCATTACGCTTCTTCGATCGGCTCAGCGCCTGCACACTCATTTCGTGGGTTGATT
257 CTTGTGCATTACGCCTCTCCGATCGGCTCAACGCCCGCACACTCATTTCATGGCTAGACT
* * *
12771504 TATGCATACGGAGTTGATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAAGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAGGATCG
* *** *
12771569 ATAGCACGCAGTGGGGGATCGAG-CTGATCCTTGGCTTGCGCATTCTACCTCTCCGATCGGCTGA
66 -TAGCACGCAG-GGGGGATCGGGTC-GATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGA
*
12771633 GTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
128 GTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
12771670 GCAGAGTTCA
Statistics
Matches: 406, Mismatches: 70, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
316 4 0.01
317 325 0.80
318 77 0.19
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (316 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAGGATCG
TAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGTG
CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
GGACCGAGGGTTGTGGCAACGGGACTGACAACACGCAGAGGGGGACTGAACCAATCCACGGCTTG
TGCATTACGCCTCTCCGATCGGCTCAACGCCCGCACACTCATTTCATGGCTAGACT
Found at i:12771677 original size:159 final size:158
Alignment explanation
Indices: 12770870--12771693 Score: 705
Period size: 159 Copynumber: 5.2 Consensus size: 158
12770860 ATCCCCAGTC
* * * *
12770870 TAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGATCGGACCGAGGGTTGTGGCAGCAGGATCG
*** * * * * *
12770935 GTGGCACGCAGGGTGGATCGGGTTGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
66 ACAGCACGCAGGGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
* * * * *
12771000 ACCTGTACGCTCGTTTCATGGATTGGCT
131 GCCCGCACGCTCGTTTCATGGGTTGACT
* * * * * *
12771028 TAGGCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCGGACCGAGGGTTGTGGCAACGGGA-
1 TAGGCATACGGAGTTCATTCCCA-GTCTAAGATCCGA-TCGGACCGAGGGTTGTGGCAGCAGGAT
* * * * * * * *
12771090 CTGGCAACATGCAGAGGGGGA-CTGA-ATCGATCCCCGGCTTGTGCATTATGCCTCTCCGGTTGG
64 C-GACAGCACGCAG-GGGGGATC-GAGCT-GATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGG
* * * * *
12771153 CTTAACGCCCGCATGCTCGTTTCATGGCTAGACT
125 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
* * * * * * *
12771187 TAGGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACTGAGGGTTGTGACAGTAGGATC-
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGATCGGACCGAGGGTTGTGGCAGCAGGATCG
* * * * *
12771251 AGCAGCACGCAGGGGGGACCG-GGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGGTTAA
66 A-CAGCACGCAGGGGGGATCGAGCT-GATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGA
* * * *
12771315 GTGCCCGCACGTTCGTTTCGTGGGTTGGCT
129 GCGCCCGCACGCTCGTTTCATGGGTTGACT
* * * **
12771345 TAGGCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCGGACCGAGGGTTGTGGCAGTGGGAT
1 TAGGCATACGGAGTTCATTCCCA-GTCTAAGATCCGA-TCGGACCGAGGGTTGTGGCAGCAGGAT
** ** * * *
12771408 CGACAGCACGCAGAGGGGGATCGAGCCAATCCATGGCTTGTGCATTAC-GCTTCTTCGATCGGCT
64 CGACAGCACGCAG-GGGGGATCGAGCTGATCCCCGGCTTGCGCATT-CTGCCTCTCCGATCGGCT
* * * * * *
12771472 CAGCGCCTGCACACTCATTTCGTGGGTTGATT
127 GAGCGCCCGCACGCTCGTTTCATGGGTTGACT
* * * * *
12771504 TATGCATACGGAGTTGATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAAGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGATCGGACCGAGGGTTGTGGCAGCAGGATCG
* ** *
12771569 ATAGCACGCAGTGGGGGATCGAGCTGATCCTTGGCTTGCGCATTCTACCTCTCCGATCGGCTGAG
66 ACAGCACGCAG-GGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAG
*
12771634 TGCCCGCACGCTCGTTTCATGGGTTGACT
130 CGCCCGCACGCTCGTTTCATGGGTTGACT
* * *
12771663 TAGGCATGCAGAGTTCATCCCCCAGTCTAAG
1 TAGGCATACGGAGTTCAT-TCCCAGTCTAAG
12771694 CATGCAGAGT
Statistics
Matches: 522, Mismatches: 122, Indels: 42
0.76 0.18 0.06
Matches are distributed among these distances:
157 11 0.02
158 176 0.34
159 311 0.60
160 24 0.05
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGATCGGACCGAGGGTTGTGGCAGCAGGATCG
ACAGCACGCAGGGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
GCCCGCACGCTCGTTTCATGGGTTGACT
Found at i:12771719 original size:26 final size:27
Alignment explanation
Indices: 12771666--12771719 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
12771656 GTTGACTTAG
12771666 GCATGCAGAGTTCATCCCCCAGTCTAA
1 GCATGCAGAGTTCATCCCCCAGTCTAA
*
12771693 GCATGCAGAGTTCAT-TCCCAGTCTAA
1 GCATGCAGAGTTCATCCCCCAGTCTAA
12771719 G
1 G
12771720 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 11 0.42
27 15 0.58
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (27 bp):
GCATGCAGAGTTCATCCCCCAGTCTAA
Found at i:12771995 original size:158 final size:159
Alignment explanation
Indices: 12771833--12772196 Score: 416
Period size: 159 Copynumber: 2.3 Consensus size: 159
12771823 CGTACGATCA
* * * *
12771833 TTTCGTGGGATGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCTAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGT
** * * *
12771897 TGTGGCAGCGGGGCCGACAGCACGCAGAGGGGG-TCGGG-TCGAT-CCTGAGCTTGAGCATTATG
66 TGTGGCAGCAAGACCGACAGCACGCAG-GGGGGATCGGGCT-GATCCCCG-GCTTGAGCATTATA
* * *
12771959 CCTCTTCGGCCGGCTCAAC-ACCCACACGCTCG
128 CCTATCCGACCGGC-CAACTACCCACACGCTCG
* * * * *
12771991 TTTCGAGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAG-ATCGGACCGGACCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGT
* * * *
12772055 TGTGGCAGCAAGATCGACAGCACGTAGGGGGGAATCGGGCTGATCCCCGGCTTGCGCATTCTACC
66 TGTGGCAGCAAGACCGACAGCACGCAGGGGGG-ATCGGGCTGATCCCCGGCTTGAGCATTATACC
* * * *
12772120 TATCCGATCGGCCGACTGCCCGCACGCTCG
130 TATCCGACCGGCCAACTACCCACACGCTCG
12772150 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
12772197 TACAGAGTTC
Statistics
Matches: 171, Mismatches: 28, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
157 7 0.04
158 77 0.45
159 82 0.48
160 5 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGT
TGTGGCAGCAAGACCGACAGCACGCAGGGGGGATCGGGCTGATCCCCGGCTTGAGCATTATACCT
ATCCGACCGGCCAACTACCCACACGCTCG
Found at i:12772174 original size:159 final size:157
Alignment explanation
Indices: 12771700--12772194 Score: 487
Period size: 158 Copynumber: 3.1 Consensus size: 157
12771690 TAAGCATGCA
* * * * ** *
12771700 GAGTTCATTCCCA-GTCTAAGATCGGATCGGACCGAGGGTGGTGGAAACAAGATCGGTAACACGC
1 GAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGC
* * * * * * * * *
12771764 AGGGGGGACCGGACCGATCCCCAGCTTGCGCATTCTGCCTTTCTGGCCAGCTGAGCACCCGTACG
65 AGGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTATCCGGCCGGCCGA-CACCCGCACG
* * * *
12771829 ATCATTTCGTGGGATGGCTTAGGCATAAG
129 CTCGTTTCGTGGGTTGGCTTAGGCATACG
* ** * ** **
12771858 GAGTTCATTCCATGTCTAAG-CCCCAGCCGGACCTAGGGTTGTGGCAGCGGGGCCGACAGCACGC
1 GAGTTCATTCCATGTCTAAGATCGGA-CCGGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGC
* * * * * * *
12771922 AGAGGGGG-TCGGG-TCGAT-CCTGAGCTTGAGCATTATGCCTCTTCGGCCGGCTCAACACCCAC
65 AG-GGGGGATCGGGCT-GATCCCCG-GCTTGCGCATTCTGCCTATCCGGCCGGC-CGACACCCGC
* *
12771984 ACGCTCGTTTCGAGGGTTGACTTAGGCATACG
126 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* *
12772016 GAGTTCATTCCCTGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGTA
1 GAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCA
* ** *
12772081 GGGGGGAATCGGGCTGATCCCCGGCTTGCGCATTCTACCTATCCGATCGGCCGACTGCCCGCACG
66 GGGGGG-ATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTATCCGGCCGGCCGAC-ACCCGCACG
12772146 CTCGTTTCGTGGGTTGGCTTAGGCATACG
129 CTCGTTTCGTGGGTTGGCTTAGGCATACG
12772175 GAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
12772195 CATACAGAGT
Statistics
Matches: 265, Mismatches: 60, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
157 12 0.05
158 159 0.60
159 90 0.34
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (157 bp):
GAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGCA
GGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTATCCGGCCGGCCGACACCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACG
Found at i:12772244 original size:26 final size:26
Alignment explanation
Indices: 12772168--12772237 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
12772158 GTTGGCTTAG
12772168 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
12772194 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
12772220 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
12772238 TAGTCTATGA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:12772380 original size:210 final size:211
Alignment explanation
Indices: 12772009--12772405 Score: 496
Period size: 210 Copynumber: 1.9 Consensus size: 211
12771999 GTTGACTTAG
* **
12772009 GCATACGGAGTTCATTCCCTGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAAGATCGACA
* * * * *
12772074 GCACGTAGGGGGGAATCGGGCTGATCCCCGGCTTGCGCATTCTACCTATCCGATCGGCCGACTGC
66 GCACGCAGGGGGGAACCGAGCCGATCCCCGGCTAGCGCATTCTACCTATCCGATCGGCCGACTGC
* ** *
12772139 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAG
131 CCACACGCTCGTTTCGTGCATTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAG
12772204 TTCATTCCATGTCTAA
196 TTCATTCCATGTCTAA
* * * * * * **
12772220 GCATACGGAGTTCATT-CCTAGTCTATGATTAGACCGGACTGAGTGTTGCAGTAGCAGGATCGGT
1 GCATACGGAGTTCATTCCCT-GTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAAGATCGAC
* * * **
12772284 AGCACGCAGGGGGG-ACCGAGCCGATCCCCGG-TAAGCGCATTCTGCCTCTCCGGTCGGCTTAGC
65 AGCACGCAGGGGGGAACCGAGCCGATCCCCGGCT-AGCGCATTCTACCTATCCGATCGGCCGA-C
* *
12772347 -GCCCACACGCTCGTTTTGTGCATTGGATTAGGCATTCGGAGTTCATTCCATGTCTAAGC
128 TGCCCACACGCTCGTTTCGTGCATTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGC
12772406 CCCCACCAGA
Statistics
Matches: 156, Mismatches: 27, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
209 1 0.01
210 92 0.59
211 63 0.40
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (211 bp):
GCATACGGAGTTCATTCCCTGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAAGATCGACA
GCACGCAGGGGGGAACCGAGCCGATCCCCGGCTAGCGCATTCTACCTATCCGATCGGCCGACTGC
CCACACGCTCGTTTCGTGCATTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAG
TTCATTCCATGTCTAA
Found at i:12772579 original size:26 final size:26
Alignment explanation
Indices: 12772549--12772601 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12772539 ATTGACTTAG
12772549 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
12772575 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12772601 G
1 G
12772602 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12772936 original size:341 final size:349
Alignment explanation
Indices: 12772194--12772955 Score: 861
Period size: 341 Copynumber: 2.2 Consensus size: 349
12772184 CCATGTCTAA
* * *
12772194 GCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTATGATTAGACCGGAC
1 GCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* * * **
12772259 TGAGTGTTGCAGTAGCAGGATCGGTAGCACGCAGGGGGGACCGAGCCGATCCCCGGTAAGCGCAT
66 CGAGGGCTGCAGTAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGGTAAGCGCAT
* * * *
12772324 TCTGCCTCTCCGGTCGGCTTAGCGCCCACACGCTCGTTTTGTGCATTGGATTAGGCATTCGGAGT
131 TCTGCCTCTCCGGACGGCTGAGCGCCCACACGCCCGTTTTGTGCATTGGATTAGGCATACGGAGT
*
12772389 TCATTCCATGTCTAAGCCCCCACCAGACTGAGGGTTGTGGTAGCAGGACCGATAGCGGGATCGGC
196 TCATTCCATGTCTAAGCCCCCACCAGACTGAGGGTTGTGGTAGCAGG--CGA-AGC--G-TCGAC
** * * * *
12772454 AGCACGCAGAGAGGGACTTGGCTGATCCTCAGCTTACGCATTATGCCTCTCCGACTGTCTGAGTG
255 AGCACGCAGAGAGGGACCAGGCCGATCCTCAGCTTACGCATTATGCCACTCCGACTGGCTCAGTG
*
12772519 ATCGCACGCTCGTTCAGTGGATTGACTTAG
320 ACCGCACGCTCGTTCAGTGGATTGACTTAG
* *
12772549 GCATACAGAGTTCATCCCCA-GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
1 GCATACAGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * * *
12772613 CCGAGGGCTGCGGTAGGAGGATCGACAGCACGTA-GGGGGATCGAGCCGATCCCCGGCT-TGCGC
65 CCGAGGGCTGCAGTAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGG-TAAGCGC
* * * ** * *
12772676 ATTCTGCCTCT-CTGACAGGCTGAGCG-CCGCACGCCCTTTTTGTGGGTTGGCTTAGGCATAGGG
129 ATTCTGCCTCTCCGGAC-GGCTGAGCGCCCACACGCCCGTTTTGTGCATTGGATTAGGCATACGG
* ** *
12772739 AGTTCATTCCATGTCTATGCCCCTGCCGGACTGAGGGTTGTGGCT-GC-GG-G-A-C-T-GACAG
193 AGTTCATTCCATGTCTAAGCCCCCACCAGACTGAGGGTTGTGG-TAGCAGGCGAAGCGTCGACAG
* * * * *
12772797 CACGCGGAGGGGGACCAGGCCGATCC-CTGGCTTGCGCATTATGCCACTCCGGCTGGCTCAGT-A
257 CACGCAGAGAGGGACCAGGCCGATCCTC-AGCTTACGCATTATGCCACTCCGACTGGCTCAGTGA
*
12772860 CCCGCACGCTCGTTTC-GTGGGTTGACTTAG
321 -CCGCACGCTCG-TTCAGTGGATTGACTTAG
* * * * *
12772890 GCGTACGGAGTTCATTCCATGTCTAAGCATACGGAGTTGATTCCCAGTCTAAAATCAGACTGGAC
1 GCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
12772955 C
66 C
12772956 AAGGTTGCCA
Statistics
Matches: 348, Mismatches: 51, Indels: 30
0.81 0.12 0.07
Matches are distributed among these distances:
340 5 0.01
341 131 0.38
342 4 0.01
346 1 0.00
347 1 0.00
349 1 0.00
352 2 0.01
353 73 0.21
354 45 0.13
355 82 0.24
356 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (349 bp):
GCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
CGAGGGCTGCAGTAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGGTAAGCGCAT
TCTGCCTCTCCGGACGGCTGAGCGCCCACACGCCCGTTTTGTGCATTGGATTAGGCATACGGAGT
TCATTCCATGTCTAAGCCCCCACCAGACTGAGGGTTGTGGTAGCAGGCGAAGCGTCGACAGCACG
CAGAGAGGGACCAGGCCGATCCTCAGCTTACGCATTATGCCACTCCGACTGGCTCAGTGACCGCA
CGCTCGTTCAGTGGATTGACTTAG
Found at i:12773127 original size:26 final size:26
Alignment explanation
Indices: 12773098--12773150 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12773088 GTTGACTTAG
*
12773098 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGCTCATCCCCAATCTAA
* *
12773124 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAATCTAA
12773150 G
1 G
12773151 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCCAATCTAA
Found at i:12773812 original size:159 final size:160
Alignment explanation
Indices: 12773556--12773931 Score: 404
Period size: 159 Copynumber: 2.4 Consensus size: 160
12773546 CGATTGAGCA
* * *
12773556 CCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCCAAGCCCCAGCC
1 CCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
** ** * *
12773621 AGACCGAGGGTTGTGGCAATGGGATCGGCAGCACGCA-GAAGGGGACCGAGCCGAT-CTCTGGCT
66 AGACCGAGGGTTGCAGCAACAGGATCGACAGCACACATG-AGGGGACCGAGCCGATCCT-TGGCT
* * * *
12773684 TGCGCATTATGCCTCTCCGATCGGCTCAATG-
129 TACGCATTATGCCTATCCGATAGGCTCAACGC
* * * * ** *
12773715 CCTGCATGCTCGTTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGA
1 CCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-
* * * *
12773778 CCAGACCGAGGGTTGCAGCAACAGGATTGACAGCACACATGGGGGGACCGGGCCGGTCCTTGGCT
64 CCAGACCGAGGGTTGCAGCAACAGGATCGACAGCACACATGAGGGGACCGAGCCGATCCTTGGCT
* * * * *
12773843 TACGCATTCTGCCTATCCGGTAGGTTGAGCGC
129 TACGCATTATGCCTATCCGATAGGCTCAACGC
*
12773875 CCT-CACGCTCGTTTCACGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12773932 ATACAGAGTT
Statistics
Matches: 176, Mismatches: 34, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
158 5 0.03
159 162 0.92
160 9 0.05
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (160 bp):
CCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC
AGACCGAGGGTTGCAGCAACAGGATCGACAGCACACATGAGGGGACCGAGCCGATCCTTGGCTTA
CGCATTATGCCTATCCGATAGGCTCAACGC
Found at i:12773933 original size:26 final size:26
Alignment explanation
Indices: 12773904--12773956 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12773894 GTTGGCTTAG
*
12773904 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTGCCA-GTCTAA
12773930 GCATACAGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTGCCAGTCTAA
12773956 G
1 G
12773957 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTGCCAGTCTAA
Found at i:12774136 original size:26 final size:26
Alignment explanation
Indices: 12774100--12774150 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12774090 TTGACTTAGG
*
12774100 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACAGAGTTCATCCCCAGTCTAAC
* *
12774126 CATACAGAGTTCATTCCTAGTCTAA
1 CATACAGAGTTCATCCCCAGTCTAA
12774151 GATTGGACCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAC
Found at i:12774452 original size:159 final size:158
Alignment explanation
Indices: 12774126--12774628 Score: 486
Period size: 158 Copynumber: 3.2 Consensus size: 158
12774116 CCAGTCTAAC
* *** *
12774126 CATACAGAGTTCATTCC-TAGTCTAAG-ATTGGACCAGACCGAGGGTTACT-GTAGCAAGATCGA
1 CATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCAGACCGAGGGTTA-TGGTAGCAGGATCGA
* * * * *
12774188 CAGCACGCAGTGGGGACCTGACTGATCC-CTGG-TTTGCGCATTTTGCCTCT-TCGGTCGACTGA
64 CAGCACGCAGGGGGGACCTGGCCGATCCTC-GGCTTT-CGCATTATGCCTCTCT-GGTCGGCTGA
* *
12774250 GCGCCCGCAAGCCCGTTTTGTGGGTTGGCTTAGG
126 GCGCCCG-AAGCTCGTTTCGTGGGTTGGCTTAGG
* *
12774284 CATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTATGGTAGCAGGATCGACA
1 CATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTATGGTAGCAGGATCGACA
* * *
12774348 GCACGCAGAGGGGGACCAGGCCGATCCTCGGCTTTCGCATTATGCCTCTCTGGTCGGCTCAGTGC
66 GCACGCAG-GGGGGACCTGGCCGATCCTCGGCTTTCGCATTATGCCTCTCTGGTCGGCTGAGCGC
* * *
12774413 CCGAACGCTCATTTCATGGGTTGACTTAGG
130 CCGAA-GCTCGTTTCGTGGGTTGGCTTAGG
* * ** ** * *
12774443 CATACGGAGTTCATTCCCA-GTATAAG-ATCAGACTGGACCGAGGGTTGCGATAGCAGAATCGAC
1 CATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTATGGTAGCAGGATCGAC
* * * * * * * ** *
12774506 AGCACGCAGGGAGGACCTGGTCGGT-CTACGACTTACGCATTCTGCCTCTCCGACCAGCTGAGCG
65 AGCACGCAGGGGGGACCTGGCCGATCCT-CGGCTTTCGCATTATGCCTCTCTGGTCGGCTGAGCG
*
12774570 CCCGCATGCTCGTTTCGTGGGTTGGCTTAGG
129 CCCG-AAGCTCGTTTCGTGGGTTGGCTTAGG
12774601 CATACGGAGTTCATTCCATGTCTAAGCA
1 CATACGGAGTTCATTCCATGTCTAAGCA
12774629 TACGGAGTTC
Statistics
Matches: 283, Mismatches: 48, Indels: 27
0.79 0.13 0.08
Matches are distributed among these distances:
157 6 0.02
158 149 0.53
159 120 0.42
160 8 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
CATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTATGGTAGCAGGATCGACA
GCACGCAGGGGGGACCTGGCCGATCCTCGGCTTTCGCATTATGCCTCTCTGGTCGGCTGAGCGCC
CGAAGCTCGTTTCGTGGGTTGGCTTAGG
Found at i:12774650 original size:26 final size:26
Alignment explanation
Indices: 12774600--12774652 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12774590 GTTGGCTTAG
*
12774600 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
12774626 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
12774652 G
1 G
12774653 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:12774839 original size:26 final size:26
Alignment explanation
Indices: 12774809--12774863 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
12774799 GTTGACTTAG
*
12774809 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
*
12774835 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
12774861 GCA
1 GCA
12774864 GCGCACAGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCACTCTAA
Found at i:12775176 original size:159 final size:159
Alignment explanation
Indices: 12774862--12775293 Score: 492
Period size: 159 Copynumber: 2.7 Consensus size: 159
12774852 CCACTCTAAG
* * * * * * *
12774862 CAGCGCACAGAGGGGGATCGAGCTGATCCCC-AGCTTGTGCATTATGCCTTTCCGATCGGTTCAG
1 CAGCACACAGGGGGGGACCGAGCCGATCCCCGA-CTTGCGCATTATGCCTCTCCGATCGGCTCAG
* *
12774926 CACCCGAACGCTCGTTTCGTAGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGA
65 CACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
* * ** *
12774991 CTGGACTGAGGGTTGCAGTAGCAGGATCGA
130 CCGAACCAAGGGTTGCAGTAGCAGGATCAA
* * * * *
12775021 CAGCA-AGCAGGGTGGGACCGAGCCGATCCCTGACTTGCGCATTATGCCTCTCTGACCGACTCAG
1 CAGCACA-CAGGGGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCAG
* *
12775085 CACCCGAACGCTCGTTTCATGGGTTGATTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
65 CACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
** * *
12775150 CCGAACCAAGGGTTGTGGCT-GTAGGATTAA
130 CCGAACCAAGGGTTGCAG-TAGCAGGATCAA
* * * * * * *
12775180 CAGCACATAGGGGGGGACCGAGCCGGTCCCCGGCTTGCTCATTCTACCTCTCCGATCGGCTGAGC
1 CAGCACACAGGGGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGC
* * * *
12775245 GCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
66 ACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
12775294 ATGTCTCAGC
Statistics
Matches: 226, Mismatches: 43, Indels: 8
0.82 0.16 0.03
Matches are distributed among these distances:
158 1 0.00
159 222 0.98
160 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (159 bp):
CAGCACACAGGGGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGC
ACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGAC
CGAACCAAGGGTTGCAGTAGCAGGATCAA
Found at i:12775514 original size:26 final size:26
Alignment explanation
Indices: 12775484--12775536 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12775474 GTTGACTTAG
*
12775484 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
12775510 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12775536 G
1 G
12775537 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12775684 original size:26 final size:26
Alignment explanation
Indices: 12775648--12775700 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12775638 GTTGGCTTAG
*
12775648 GCATGCGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCAT-TCTAA
12775674 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
12775700 G
1 G
12775701 AGTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:12776496 original size:26 final size:26
Alignment explanation
Indices: 12776462--12776513 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
12776452 GTTGACTTAG
*
12776462 GCATGCGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12776488 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12776514 TATCGGATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12777303 original size:159 final size:159
Alignment explanation
Indices: 12776488--12777305 Score: 704
Period size: 159 Copynumber: 5.2 Consensus size: 159
12776478 CCCAGTCTAA
* * * ** **
12776488 GCATACGGAGTTCATTCCCAGTCTAATATCGGATCGGACTGAGGGTTGTGATAGCAGGATCGATG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * ** *
12776553 GCACGCA-AGGTGGATCGAGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGC
66 GCACGCAGAGGGGGATCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* * * *
12776617 CTGCACGCCCGTTTCCTGGGTTGGCTTAG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** * * *
12776646 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGG--CAGACCGAGGGTTGTGGCAGCGGGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATC-GGACCGGACCGAGGGTTGTGGCAGCAGGATCG
* * * * * * * * * *
12776708 ACAACACACAGAGGGGGATCGGGCCGATCCTCGGCTTGTGCATTATGCCTCTCCGGTTGGCTTAA
63 ACAGCACGCAGAGGGGGATCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAG
* **
12776773 CGCCCGTACGCTCGTTTTATGGGTTGACTTAG
128 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * ** * *
12776805 CCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGTAGTAGGATC-AGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGA-C
* * * * * *
12776869 AGCACGCAGA-GGGG-TCG-GGCTGATCCCCGGTTTGTGCATTCTACCTCTCCGGTCGGTTGAGT
65 AGCACGCAGAGGGGGATCGAGTC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
* *
12776931 GCCCGCACGCTCGTTTCGTGGGTTGGCTTGG
129 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * ** * ** *
12776962 GCGTAAGGAGTTCATT-CCATGTCTAAG-CCCCAGTCGGACCGAGGGTTGTGGCAGTGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * ** * * * * *
12777025 CAGCATGCAGAGGGGGACCGGGACGA-CCATGGCTTGCACATTATGCTTCTTCGGTCGGCTCAGC
64 CAGCACGCAGAGGGGGATCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
* * * *
12777089 ACCCGCACACTCATTTCGTGGGTTGACTTAT
129 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
12777120 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * ** * * *
12777185 GTACGCAGTGGGGGATCGAGTCGATCCTTGGCTTGCGCATTCTACCTCTCCGATCGGCTGAGTGC
66 GCACGCAGAGGGGGATCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* *
12777250 CTGCACGCTCGTTTCGTGGGTTAACTTAG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
12777279 GCATACAGAGTTCATCCCCGGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
12777306 CATATGGAGT
Statistics
Matches: 509, Mismatches: 133, Indels: 35
0.75 0.20 0.05
Matches are distributed among these distances:
156 7 0.01
157 116 0.23
158 177 0.35
159 202 0.40
160 7 0.01
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGAGGGGGATCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:12777476 original size:184 final size:185
Alignment explanation
Indices: 12777120--12777477 Score: 461
Period size: 184 Copynumber: 1.9 Consensus size: 185
12777110 GTTGACTTAT
* * * * *
12777120 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAACAAGATCGACA
* * * * * * * * *
12777185 GTACGCAGTGGGGGATCGAGTCGATCCTTGGCTTGCGCATTCTACCTCTCCGATCGGCTGAGTGC
66 GCACGCAGTGGGGGATCCAGCCAATCCTCGGCTTACGCATTCTACCTCTCCGACCAGCTGAATGC
* * *
12777250 CTGCACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATCCCCGGTCTAA
131 CCGCACGATCGTTTCGTGGGATAACTTAGGCATACAGAGTTCATCCCCGGTCTAA
* *
12777305 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAACAAGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAACAAGATCGACA
* * *
12777370 GCACGCAG-GGGGGA-CCATGCCAATCCTCGGGTTACGCATTCTCCCTCTCCGACCAGTTGAATG
66 GCACGCAGTGGGGGATCCA-GCCAATCCTCGGCTTACGCATTCTACCTCTCCGACCAGCTGAATG
**
12777433 CCCGCACGATCGTTTCGTGGGATGGCTTAGGCATA-AGGAGTTCAT
130 CCCGCACGATCGTTTCGTGGGATAACTTAGGCATACA-GAGTTCAT
12777478 TCCATGTATA
Statistics
Matches: 147, Mismatches: 24, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
183 3 0.02
184 79 0.54
185 65 0.44
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAACAAGATCGACA
GCACGCAGTGGGGGATCCAGCCAATCCTCGGCTTACGCATTCTACCTCTCCGACCAGCTGAATGC
CCGCACGATCGTTTCGTGGGATAACTTAGGCATACAGAGTTCATCCCCGGTCTAA
Done.