Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 88 of 402
Found at i:12777856 original size:26 final size:26
Alignment explanation
Indices: 12777780--12777849 Score: 122
Period size: 26 Copynumber: 2.7 Consensus size: 26
12777770 GTTGGCTTAG
12777780 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
12777806 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
12777832 GCATACGGTGTTCATTCC
1 GCATACGGAGTTCATTCC
12777850 CAGTCTATGA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:12777868 original size:501 final size:499
Alignment explanation
Indices: 12776904--12777832 Score: 1211
Period size: 501 Copynumber: 1.9 Consensus size: 499
12776894 CCCGGTTTGT
** * * * * * *
12776904 GCATTCTACCTCTCCGGTCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTGGGCGTAAG
1 GCATTCTACCTCTCCGACCAGTTGAATGCCCGCACGATCGTTTCGTGGGATGGCTTAGGCATAAG
* * *
12776969 GAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTGGGACCGACAGCATGCA
66 GAGTTCATTCCATGTATAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCATGCA
* ** * ** *
12777034 GAGGGGGACCGGGACGACCATGGCTTGCACATTATGCTTCTTCGGTCGGCTCAGCACCCGCACAC
131 GAGGGGGACCGGGACAACCACAGCTTGCACATTATGCTTCTCCGACCGGCTCAGCACCCACACAC
* * *
12777099 TCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAGG
196 TCATTTCGAGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
* ** * * **
12777164 GTTGTGGCAGCAGGATCGATAGTACGCAGTGGGGGATCGAGTCGATCCTTGGCTTGCGCATTCTA
261 GTTGTGGCAGCAGGATCGACAAAACGCAGTGGGGGAACCAGTCGATCCCCGGCTTGCGCATTCTA
* *
12777229 CCTCTCCGATCGGCTGAGTGCCTGCACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCAT
326 CCTATCCGATCGGCTGACTGCCTGCACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCAT
* ** * * *
12777294 CCCCGGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAA
391 CCCAGGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCCA-GGTTGAGG-AA
12777359 CAAGATCGGCAGCACGCAGGGGGGACCATGCCAATCCTCGGGTTAC
454 CAAGATCGGCAGCACGCAGGGGGGACCATGCCAATCCTCGGGTTAC
*
12777405 GCATTCTCCCTCTCCGACCAGTTGAATGCCCGCACGATCGTTTCGTGGGATGGCTTAGGCATAAG
1 GCATTCTACCTCTCCGACCAGTTGAATGCCCGCACGATCGTTTCGTGGGATGGCTTAGGCATAAG
* ** *
12777470 GAGTTCATTCCATGTATAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGGGGTCGGCAGCATGCA
66 GAGTTCATTCCATGTATAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCATGCA
* * * ** *
12777535 GAGGGGG-CCGGGCCAATCCCCAGCTTGCATATTATGCCTT-TCCGACCGGCTCAGTGCCTACAC
131 GAGGGGGACCGGGACAA-CCACAGCTTGCACATTATG-CTTCTCCGACCGGCTCAGCACCCACAC
* * *
12777598 GCTCATTTCGAGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGATTGGACCGGACCGA
194 ACTCATTTCGAGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
* * *
12777663 GGGTTGTGGCAGCAGGATCGACAAAACGTAG-GGGGGAACCAGGTCGATCCCCGGTTTGTGCATT
259 GGGTTGTGGCAGCAGGATCGACAAAACGCAGTGGGGGAACCA-GTCGATCCCCGGCTTGCGCATT
* * * ** *
12777727 CTGCCTATTCGATCGG-TCGACTGCTTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
323 CTACCTATCCGATCGGCT-GACTGCCTGCACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGT
* *
12777791 TCATTCCATGTCTAAGCATACAGAGTTCATT-CCATGTCTAAG
387 TCATCCCAGGTCTAAGCATACAGAGTTCATTCCCA-GTCTAAG
12777833 CATACGGTGT
Statistics
Matches: 365, Mismatches: 58, Indels: 10
0.84 0.13 0.02
Matches are distributed among these distances:
500 19 0.05
501 343 0.94
502 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (499 bp):
GCATTCTACCTCTCCGACCAGTTGAATGCCCGCACGATCGTTTCGTGGGATGGCTTAGGCATAAG
GAGTTCATTCCATGTATAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCATGCA
GAGGGGGACCGGGACAACCACAGCTTGCACATTATGCTTCTCCGACCGGCTCAGCACCCACACAC
TCATTTCGAGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
GTTGTGGCAGCAGGATCGACAAAACGCAGTGGGGGAACCAGTCGATCCCCGGCTTGCGCATTCTA
CCTATCCGATCGGCTGACTGCCTGCACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCAT
CCCAGGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCCAGGTTGAGGAACA
AGATCGGCAGCACGCAGGGGGGACCATGCCAATCCTCGGGTTAC
Found at i:12778191 original size:26 final size:26
Alignment explanation
Indices: 12778162--12778212 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12778152 TTGACTTAGG
12778162 CATACAGAGTTCATCCCCAGTCTAAA
1 CATACAGAGTTCATCCCCAGTCTAAA
* *
12778188 CATACGGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATCCCCAGTCTAA
12778213 GATCAGATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAA
Found at i:12778538 original size:26 final size:26
Alignment explanation
Indices: 12778502--12778554 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12778492 GTTGACTTAG
12778502 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12778528 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12778554 G
1 G
12778555 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12778548 original size:341 final size:348
Alignment explanation
Indices: 12777806--12778557 Score: 897
Period size: 341 Copynumber: 2.2 Consensus size: 348
12777796 CCATGTCTAA
* * * *
12777806 GCATACAGAGTTCATTCCATGTCTAAGCATACGGTGTTCATTCCCAGTCTATGATTAGATCGGAC
1 GCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGAC
* * * * * * * *
12777871 CGAGTGTTGCGGTAGTAGGATCGGTAGCACGTAGGAGGGATCGAGCCGATCTCCGGCAAGCGCAT
66 CGAGGGCTACGGTAGTAAGATCGGCAGCACGCA-GAGGGACCGAGCCGATCCCCGGCAAGCGCAT
*
12777936 TCTGCCTCTCCGATCGGCTGAGCGCCCGTACACTCGTTTCGTGGGTTGGCTTAGGCATTCGGAGT
130 TCTGCCTCTCCGATCGGCTGAGCGCCCG-ACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
*
12778001 TCATTCCATGTCTAAGCCCCCGCCAGACTGAGGGTTGTGGCAGTAGGATCGACAGTGGGATCGAC
194 TCATTCCATGTCTAAGCCCCCGCCAGACTAAGGGTTGTGGCAGTAGGA--GACA-T-GGATCGAC
* * * * *
12778066 AGCATGTAGAGGGGGACTGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCAACCGTCTGAGCG
255 AGCACG-AGAGGGGGACAGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCAACCGGCTCAACG
* *
12778131 ATCGCACGCTCGTTCGGTGGGTTGACTTAG
319 ACCGCACACTCGTTCGGTGGGTTGACTTAG
* *
12778161 GCATACAGAGTTCATCCCCA-GTCTAAACATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGA
1 GCATACAGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGA
**
12778225 CCGAGGGCTACGGCT-GTAAGATCGGCAGCACGCA-AGGCGACCGAGCCGATCCCCGGCTTGCGC
65 CCGAGGGCTACGG-TAGTAAGATCGGCAGCACGCAGAGG-GACCGAGCCGATCCCCGGCAAGCGC
* *
12778288 ATTCTGCCTCTCTGA-CAGGCTGAGCG-CCG-CACGTCCGTTTCGTGGGTTGGCTTAGGCATAGG
128 ATTCTGCCTCTCCGATC-GGCTGAGCGCCCGACAC-T-CGTTTCGTGGGTTGGCTTAGGCATACG
* * * * *
12778350 GAGTTCATTCCATGTCTATGCCCCTGCCGGACTAAGGGTTGTGGCTG-CGG-GAC-T-GA-C-AG
190 GAGTTCATTCCATGTCTAAGCCCCCGCCAGACTAAGGGTTGTGGCAGTAGGAGACATGGATCGA-
* * ** *
12778409 CA-CACG-GAGGGGGACCAGGTC-GATCCCTGGCTTGCGCATTATGCCTCTCCGGCTGGCTCAAC
254 CAGCACGAGAGGGGGA-CAGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCAACCGGCTCAAC
*
12778471 GCCCGCACACTCGTTTC-GTGGGTTGACTTAG
318 GACCGCACACTCG-TTCGGTGGGTTGACTTAG
*
12778502 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
1 GCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
12778558 GGACTGGACC
Statistics
Matches: 346, Mismatches: 41, Indels: 34
0.82 0.10 0.08
Matches are distributed among these distances:
340 3 0.01
341 115 0.33
342 7 0.02
343 4 0.01
344 3 0.01
345 2 0.01
347 1 0.00
349 3 0.01
351 3 0.01
352 3 0.01
353 74 0.21
354 44 0.13
355 80 0.23
356 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (348 bp):
GCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGAC
CGAGGGCTACGGTAGTAAGATCGGCAGCACGCAGAGGGACCGAGCCGATCCCCGGCAAGCGCATT
CTGCCTCTCCGATCGGCTGAGCGCCCGACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCCCCCGCCAGACTAAGGGTTGTGGCAGTAGGAGACATGGATCGACAGCACG
AGAGGGGGACAGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCAACCGGCTCAACGACCGCAC
ACTCGTTCGGTGGGTTGACTTAG
Found at i:12778740 original size:26 final size:26
Alignment explanation
Indices: 12778710--12778762 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12778700 GTTGACTTAG
*
12778710 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGCTCATCCCCAATCTAA
* *
12778736 GCATACGAAGCTCATTCCCAGTCTAA
1 GCATACGAAGCTCATCCCCAATCTAA
12778762 G
1 G
12778763 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.23
Consensus pattern (26 bp):
GCATACGAAGCTCATCCCCAATCTAA
Found at i:12779540 original size:158 final size:159
Alignment explanation
Indices: 12779172--12779544 Score: 403
Period size: 158 Copynumber: 2.4 Consensus size: 159
12779162 TTGAGCACCT
* * * * *
12779172 GCACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCCAAGCCCCAGCCGGA
1 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGAA
* ** * * *
12779237 CCGAGGGTTATGGCAGCGGGATCGACAGCACGCAGAAGGGGACCGAGCCAATCTCCGACTTGCGC
66 CCGAGAGTTACAGCAGCAGGATCGACAGCACACAGAAGGGGACCGAGCCAATCTCAGACTTGCGC
* * * * *
12779302 ATTATGCCTCTTCGGTCGGCTCAGCGCCT
131 ATTATGCCTATCCGGCCGGCTCAACGCCC
* * *
12779331 GCACGCTCGTTTCATGGTTTGACTTAGGCATACGGAGTTCATTCTCA-GTCTAAG-ATCAGACCG
1 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCACCAG-CCG
* * * * * ** *
12779394 AACCGAGAGTTGCAGCAGCAGGATCGACAGCACACAG-GGGGGATCGGGTCGGTCCTTAG-CTTG
64 AACCGAGAGTTACAGCAGCAGGATCGACAGCACACAGAAGGGGACCGAGCCAAT-CTCAGACTTG
* * *
12779457 CGCATTCTGCCTATCCGGCCGGTTGAACGCCC
128 CGCATTATGCCTATCCGGCCGGCTCAACGCCC
* *
12779489 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTGCATGTCTAAGCA
1 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
12779545 TACAGAGTTC
Statistics
Matches: 175, Mismatches: 34, Indels: 10
0.80 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 88 0.50
159 83 0.47
160 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGAA
CCGAGAGTTACAGCAGCAGGATCGACAGCACACAGAAGGGGACCGAGCCAATCTCAGACTTGCGC
ATTATGCCTATCCGGCCGGCTCAACGCCC
Found at i:12779565 original size:26 final size:26
Alignment explanation
Indices: 12779516--12779568 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12779506 GTTGGCTTAG
* *
12779516 GCATACGGAGTTCATTGCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
12779542 GCATACAGAGTTCATTCC-TAGTCTAA
1 GCATACAGAGTTCATTCCAT-GTCTAA
12779568 G
1 G
12779569 ATCAGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:12779684 original size:184 final size:184
Alignment explanation
Indices: 12779358--12779911 Score: 621
Period size: 184 Copynumber: 3.0 Consensus size: 184
12779348 TTTGACTTAG
* * * *
12779358 GCATACGGAGTTCATT-CTCAGTCTAAGATCAGACCGAACCGAGAGTTGCAGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCT-AGTCTAAGATCAGACCGGATCGAGGGTTGCAGTAGCAGGATCGAC
* * * ** * * * * * *
12779422 AGCACACAGGGGGGATCGGGTCGGTCCTTAGCTTGCGCATTCTGCCTATCCGGCCGGTTGAACGC
65 AGCACGCAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTTTGCCTCTTCGGTCGGCTGAGCGC
* *
12779487 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTGCATGTCTAA
130 CCGCACCCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* ** * *
12779542 GCATACAGAGTTCATTCCTAGTCTAAGATCAGATTGGATCGAGGGTTGCAGTAACAGGATCGGCA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCAGTAGCAGGATCGACA
* * * * * *
12779607 GCACGCAGGGGGGATCGAGCCAATCCTCGGCTTACGCATTTTGCCTCTTCGATCGACTGAGTGCC
66 GCACGCAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTTTGCCTCTTCGGTCGGCTGAGCGCC
* * * ** * *
12779672 TGCACCCTCGTTTCGTAGGTTGACTTAGGCATACAAAGTTCATCCCCA-ATCTAA
131 CGCACCCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAA
* * * * *
12779726 CCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCAGTAGCAGGATCGACA
* * * * * *
12779791 GCATGCAGTGGGGATCGGGCTGATCC-CTGGTTTGCGCATTTTACCTCTTGGGTCGGCTGAGCGC
66 GCACGCAGGGGGGATCGGGCCGATCCTC-GGCTTGCGCATTTTGCCTCTTCGGTCGGCTGAGCGC
*
12779855 CCGCACGCC-CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
130 CCGCAC-CCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
12779910 GC
1 GC
12779912 CCCAGCCAGA
Statistics
Matches: 299, Mismatches: 66, Indels: 10
0.80 0.18 0.03
Matches are distributed among these distances:
183 4 0.01
184 289 0.97
185 6 0.02
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCAGTAGCAGGATCGACA
GCACGCAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTTTGCCTCTTCGGTCGGCTGAGCGCC
CGCACCCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:12780043 original size:158 final size:159
Alignment explanation
Indices: 12779727--12780228 Score: 409
Period size: 158 Copynumber: 3.2 Consensus size: 159
12779717 CCAATCTAAC
* * * *
12779727 CATATGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGATCGAGGGTTGCGGTAGCAGGATCGAC
1 CATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * ** * * * ** ** * *
12779790 AGCATGCAGTGG-GGATCGGGCTGA-TCCCTGGTTTGCGCATTTTACCTCTTGGGTCGGCTGAGC
65 AGCACGCAG-GGAGGACCAGGC-CACTCCATGACTTACGCATTATGCCTCTCCGACCAGCTCAGC
* * *
12779853 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGG
128 GCCCGAACGCTCATTTCGTGGGTTGGCTTAGG
* * * *
12779885 CATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCAGG-GCTGAC
1 CATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGCAGGATC-GAC
* * * *
12779948 AGCACGCAGAAGG-GGACCGGGCCGA-TCC-TCGGCTTACGCATTATGCCTCTCTGGCC-GACTC
65 AGCACGCAG--GGAGGACCAGGCC-ACTCCAT-GACTTACGCATTATGCCTCTCCGACCAG-CTC
* *
12780009 AGTGCCCGAACGCTCATTTCGTGGGTTGAC-TAGG
125 AGCGCCCGAACGCTCATTTCGTGGGTTGGCTTAGG
* * * *
12780043 CATACGAAGTTCATTTCCA-GTATAAG-ATCAGACCAGACCGAGGGTTGCGGCATCAGGATCGAC
1 CATACGGAGTTCA-TTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * *
12780106 AGCACGCAGGGAGGACCAGGTCACTCCATGACTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGC
65 AGCACGCAGGGAGGACCAGGCCACTCCATGACTTACGCATTATGCCTCTCCGACCAGCTCAGCGC
* * ** *
12780171 CCGCATGCTTGTTTTGTGGGTTGGCTTAGG
130 CCGAACGCTCATTTCGTGGGTTGGCTTAGG
12780201 CATACGGAGTTCATTCCATGTCTAAGCA
1 CATACGGAGTTCATTCCATGTCTAAGCA
12780229 TACAGAGTTC
Statistics
Matches: 278, Mismatches: 49, Indels: 33
0.77 0.14 0.09
Matches are distributed among these distances:
156 3 0.01
157 69 0.25
158 136 0.49
159 70 0.25
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
CATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGAGGACCAGGCCACTCCATGACTTACGCATTATGCCTCTCCGACCAGCTCAGCGCC
CGAACGCTCATTTCGTGGGTTGGCTTAGG
Found at i:12780250 original size:26 final size:26
Alignment explanation
Indices: 12780200--12780252 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12780190 GTTGGCTTAG
* *
12780200 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
12780226 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
12780252 G
1 G
12780253 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:12780439 original size:26 final size:26
Alignment explanation
Indices: 12780409--12780463 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
12780399 GTTGACTTAG
12780409 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12780435 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12780461 GCA
1 GCA
12780464 GTGCGCAGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12780901 original size:158 final size:156
Alignment explanation
Indices: 12780472--12780892 Score: 493
Period size: 159 Copynumber: 2.7 Consensus size: 156
12780462 CAGTGCGCAG
* * *
12780472 AGGGGGACCGAGCCGATCCCCGGCTTG-TGCATTATGCCTTTCTGATCGGTTCAGCACCCGAACG
1 AGGGGGACCGAGCCGATCCCC-GCTTGCT-CATTATGCCTCTCTGACCGGCTCAGCACCCGAACG
* * * * *
12780536 CTCATTTCATGGGTTGACTTAGGAATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAG
64 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCAAG
12780601 GGTTGCGGCAGCAGGATCGACAGCACGC
129 GGTTGCGGCAGCAGGATCGACAGCACGC
* * * * * *
12780629 AGGGTGGGACCGAGCCGATCCCCGACTTGCACATTATGCCTCTCCGGCTGACTCAGCGCCCGAAC
1 A-GG-GGGACCGAGCCGATCCCCG-CTTGCTCATTATGCCTCTCTGACCGGCTCAGCACCCGAAC
* *
12780694 GCTCGTTTCGTGGGTTGATTTAGGCGTACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCAA
63 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCAA
* * * * * *
12780759 GGGTTGTGGCAGTAGGATTGATAGCATGT
128 GGGTTGCGGCAGCAGGATCGACAGCACGC
* * * * * *
12780788 AGGGCGGACTGAGCCGATCCCCAGCTTGCTTATTCTACCTCTCTGACCGGCTGAGCACCCGCACG
1 AGGG-GGACCGAGCCGATCCCC-GCTTGCTCATTATGCCTCTCTGACCGGCTCAGCACCCGAACG
* * *
12780853 CTCGTTTCGTGTGTTGGCTTAGGCATACGGAGCTCATTCC
64 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
12780893 ATGTCTAAGC
Statistics
Matches: 219, Mismatches: 39, Indels: 11
0.81 0.14 0.04
Matches are distributed among these distances:
157 2 0.01
158 86 0.39
159 131 0.60
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (156 bp):
AGGGGGACCGAGCCGATCCCCGCTTGCTCATTATGCCTCTCTGACCGGCTCAGCACCCGAACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCAAGGG
TTGCGGCAGCAGGATCGACAGCACGC
Found at i:12780915 original size:26 final size:26
Alignment explanation
Indices: 12780875--12780927 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12780865 GTTGGCTTAG
12780875 GCATACGGAGCTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
*
12780901 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
12780927 G
1 G
12780928 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:12780944 original size:675 final size:673
Alignment explanation
Indices: 12779920--12781135 Score: 1667
Period size: 674 Copynumber: 1.8 Consensus size: 673
12779910 GCCCCAGCCA
* * * *
12779920 GACCGAGGGTTGTGGCAGCAGGGCTGACAGCACGCAGAAGGGGACCGGGCCGATCCTCGGCTTAC
1 GACCGAGGGTTGCGGCAGCAGGGCTGACAGCACGCAGAAGGGGACCGAGCCGATCCCCGACTTAC
* * *
12779985 GCATTATGCCTCTCTGGCCGACTCAGTGCCCGAACGCTCATTTCGTGGGTTGACTAGGCATACGA
66 ACATTATGCCTCTCCGGCCGACTCAGCGCCCGAACGCTCATTTCGTGGGTTGACTAGGCATACGA
* * *
12780050 AGTTCATTTCCAGTATAAGATCAGACCAGACCGAGGGTTGCGGCATCAGGATCGACAGCACGCAG
131 AGTTCATTCCCAATATAAGATCAGACCAGACCAAGGGTTGCGGCATCAGGATCGACAGCACGCAG
* * *
12780115 GGAGGACCAGGTCACTCCATGACTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCCCGCATGCT
196 GGAGGACCAGGTCACTCCATGACTTGCGCATTCTACCTCTCCGACCAGCTGAGCACCCGCACGCT
* * *
12780180 TGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCC
261 CGTTTCGTGGGTTGGCTTAGGCATACGGAGCTCATTCCATGTCTAAGCATACAGAGTTCATTCCC
*
12780245 AATCTAAGATCGGATCGAACCGAGGGTTG-GGCAACAGGACCAGCAGCAGGATCGATAGCACGCA
326 AATCTAAGATCGGATCGAACCGAGGGTTGCGGCAACAGGACCAACAGCAGGATCGATAGCACG-A
* * * * *
12780309 AGAGGGAATCGGGCTGACCCCCGGCTTGCACATTATGCCTCTCC-AGTTGGCCTGTCCAGTCGGT
390 AG-GGGAACCGGGCTGACCCCCAGCTTGCACATTATGCCTCTCCGA-CTGGCCTCTCCAGTCGGC
** * *
12780373 TGAGCACCTGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
453 TGAGCACCCACACGCTCGTTTCATGGGTTGACATAGGCATACGGAGTTCATCCCCAGTCTAAGCA
*
12780438 TACGGAGTTCATTCCCAGTCTAAGCAGTGCGCAGAGGGGGACCGAGCCGATCCCCGGCTTGTGCA
518 TACGAAGTTCATTCCCAGTCTAAGCAGTGCGCAGAGGGGGACCGAGCCGATCCCCGGCTTGTGCA
12780503 TTATGCCTTTCTGATCGGTTCAGCACCCGAACGCTCATTTCATGGGTTGACTTAGGAATACGGAG
583 TTATGCCTTTCTGATCGGTTCAGCACCCGAACGCTCATTTCATGGGTTGACTTAGGAATACGGAG
12780568 TTCATTCCCAATCTAAGATCAGACTG
648 TTCATTCCCAATCTAAGATCAGACTG
* *
12780594 GACCGAGGGTTGCGGCAGCA-GGATCGACAGCACGCAG-GGTGGGACCGAGCCGATCCCCGACTT
1 GACCGAGGGTTGCGGCAGCAGGGCT-GACAGCACGCAGAAG-GGGACCGAGCCGATCCCCGACTT
* * * * *
12780657 GCACATTATGCCTCTCCGGCTGACTCAGCGCCCGAACGCTCGTTTCGTGGGTTGATTTAGGCGTA
64 ACACATTATGCCTCTCCGGCCGACTCAGCGCCCGAACGCTCATTTCGTGGGTTGA-CTAGGCATA
* * * * * * *
12780722 CGGAGTTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTGTGGCAGT-AGGATTGATAGCAT
128 CGAAGTTCATTCCCAATATAAGATCAGACCAGACCAAGGGTTGCGGCA-TCAGGATCGACAGCAC
* * * ** * *
12780786 GTAGGGCGGACTGAGCCGATC-C-CCA-G-CTTGCTTATTCTACCTCTCTGACCGGCTGAGCACC
192 GCAGGGAGGAC-CAG--G-TCACTCCATGACTTGCGCATTCTACCTCTCCGACCAGCTGAGCACC
* *
12780847 CGCACGCTCGTTTCGTGTGTTGGCTTAGGCATACGGAGCTCATTCCATGTCTAAGCATACGGAGT
253 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGCTCATTCCATGTCTAAGCATACAGAGT
* * * * * *
12780912 TCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCAGGACCAACAGTAGGATCGGT
318 TCATTCCCAATCTAAGATCGGATCGAACCGAGGGTTGCGGCAACAGGACCAACAGCAGGATCGAT
* * * * * *
12780977 AGCACGTAGGGGGACCGGGCTGATCCCCAGCTTGCACATTCTGCCTCTTCGACTGGCCTCTCCGG
383 AGCACGAAGGGGAACCGGGCTGACCCCCAGCTTGCACATTATGCCTCTCCGACTGGCCTCTCCAG
** * * *
12781042 TCGGCTGAGTGCCCACCCGCTTGTTTCGTGGGTTGACATAGGCATACGGAGTTCATCCCCAGTCT
448 TCGGCTGAGCACCCACACGCTCGTTTCATGGGTTGACATAGGCATACGGAGTTCATCCCCAGTCT
12781107 AAGCATACGAAGTTCATTCCCAGTCTAAG
513 AAGCATACGAAGTTCATTCCCAGTCTAAG
12781136 ATCGGACTGG
Statistics
Matches: 465, Mismatches: 67, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
673 4 0.01
674 228 0.49
675 193 0.42
676 33 0.07
677 3 0.01
678 2 0.00
679 2 0.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (673 bp):
GACCGAGGGTTGCGGCAGCAGGGCTGACAGCACGCAGAAGGGGACCGAGCCGATCCCCGACTTAC
ACATTATGCCTCTCCGGCCGACTCAGCGCCCGAACGCTCATTTCGTGGGTTGACTAGGCATACGA
AGTTCATTCCCAATATAAGATCAGACCAGACCAAGGGTTGCGGCATCAGGATCGACAGCACGCAG
GGAGGACCAGGTCACTCCATGACTTGCGCATTCTACCTCTCCGACCAGCTGAGCACCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACGGAGCTCATTCCATGTCTAAGCATACAGAGTTCATTCCC
AATCTAAGATCGGATCGAACCGAGGGTTGCGGCAACAGGACCAACAGCAGGATCGATAGCACGAA
GGGGAACCGGGCTGACCCCCAGCTTGCACATTATGCCTCTCCGACTGGCCTCTCCAGTCGGCTGA
GCACCCACACGCTCGTTTCATGGGTTGACATAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
GAAGTTCATTCCCAGTCTAAGCAGTGCGCAGAGGGGGACCGAGCCGATCCCCGGCTTGTGCATTA
TGCCTTTCTGATCGGTTCAGCACCCGAACGCTCATTTCATGGGTTGACTTAGGAATACGGAGTTC
ATTCCCAATCTAAGATCAGACTG
Found at i:12781120 original size:26 final size:26
Alignment explanation
Indices: 12781083--12781135 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12781073 GTTGACATAG
*
12781083 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
12781109 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12781135 G
1 G
12781136 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12781285 original size:26 final size:26
Alignment explanation
Indices: 12781249--12781299 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12781239 TGGCTTAGGC
*
12781249 ATACGGAGTTCATT-CCATGTCTAAGG
1 ATACAGAGTTCATTCCCAT-TCTAAGG
12781275 ATACAGAGTTCATTCCCATTCTAAG
1 ATACAGAGTTCATTCCCATTCTAAG
12781300 AGTTTAAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCATTCTAAGG
Found at i:12782223 original size:157 final size:156
Alignment explanation
Indices: 12782038--12782448 Score: 364
Period size: 159 Copynumber: 2.6 Consensus size: 156
12782028 CGCACGTTCG
* * *
12782038 TTTCATGGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAAGGTT
1 TTTCGTGGGTTGACTTAGGCAAG-GGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAAGGTT
* * ** * * *
12782103 GTGGCAGCAGGATCGACAGCACGCAGGGGGATTGGGCCGA-TCCCCGACTTGTACATTTTGCCTC
65 GTGGCAGCAGGATCGACAGCACGCAGGGGGATCGAGCC-ATTCCCCGACTTACACATTATGACAC
**
12782167 TCTGGTTGGC-CGAGCGCCCACATACCT-A
129 TCTGACTGGCTC-AGCGCCCACA-ACCTCA
* ** *
12782195 TTTCGTGGGTTGACTTAGGCACAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCGGACCGAAGG
1 TTTCGTGGGTTGACTTAGGCA-AGGGAGTTCATTCCCA-GTCTAAGATCGGA-CTGGACCGAAGG
* * * * * * *
12782258 TTGTGGCAGCGGGACCGACTGTACGTAGAGGAGGATCGAGCCATTCCTCGACTTACGCATTATGA
63 TTGTGGCAGCAGGATCGACAGCACGCAG-GG-GGATCGAGCCATTCCCCGACTTACACATTATGA
* *** *
12782323 CACTCTGACTGGCTCAGTGCCTTTAAGCTCA
126 CACTCTGACTGGCTCAGCGCCCACAACCTCA
* * * * * *
12782354 TTTTGTGGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTGTAAGATCGGACTAGACCGAGGGTT
1 TTTCGTGGGTTGACTTAGGCA-AGGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAAGGTT
* * *
12782419 GGGGTAGCAGGATCGACAGCATGCAGGGGG
65 GTGGCAGCAGGATCGACAGCACGCAGGGGG
12782449 TGACCGGGTT
Statistics
Matches: 197, Mismatches: 47, Indels: 20
0.75 0.18 0.08
Matches are distributed among these distances:
156 5 0.03
157 72 0.37
158 9 0.05
159 105 0.53
160 6 0.03
ACGTcount: A:0.21, C:0.23, G:0.31, T:0.25
Consensus pattern (156 bp):
TTTCGTGGGTTGACTTAGGCAAGGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAAGGTTG
TGGCAGCAGGATCGACAGCACGCAGGGGGATCGAGCCATTCCCCGACTTACACATTATGACACTC
TGACTGGCTCAGCGCCCACAACCTCA
Found at i:12783805 original size:26 final size:26
Alignment explanation
Indices: 12783775--12783827 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12783765 GTTGACTTAG
*
12783775 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
* *
12783801 GCATATGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
12783827 G
1 G
12783828 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:12784514 original size:195 final size:196
Alignment explanation
Indices: 12784178--12784692 Score: 558
Period size: 195 Copynumber: 2.6 Consensus size: 196
12784168 ACAAGTTTGA
* * * * * * * * *
12784178 CAGCACGC-AGGGGGGACCGGGTCGGTCCCTGGCTTGTGCATTCTACCTCTACAG-TCGGTTGAG
1 CAGCACGCAAAGGGGGACCGGCTCGATCCCAGACTTGTGCATTCTAACTCTCCGGCT-GGCTGAG
* * * * *
12784241 CGCCCACACGCTCTATTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATAAG
65 CACCTACACG-TCGATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAG
* * * *
12784306 GAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTATGACAGCAAGACCAGCAGCAGGAT
129 GAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTACGACAACAAGACCAGCAGCAGGAT
12784371 TGG
194 TGG
* * * * * *
12784374 CATCACGC-AGGGGGGATCGAGCT-GATCCCCAG-CTTGTGGATTCTATCTCTCCGGCTGGTTGA
1 CAGCACGCAAAGGGGGACCG-GCTCGAT-CCCAGACTTGTGCATTCTAACTCTCCGGCTGGCTGA
12784436 GCACTCGTACAC-TC-ATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
64 GCAC-C-TACACGTCGATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
* * * * **
12784499 TGGAGTTCATTCCCAGTCTGATATCAGACCGGACTAAGGGTTGCGGTAACAAGACCAGCAGCAGG
127 AGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTACGACAACAAGACCAGCAGCAGG
12784564 ATTGG
192 ATTGG
* * * * *
12784569 TAGCATGCAAAGGGGGACCGGGTCGATCCCTGACTTGTGCATTCTAACTCTTCGGCTGGCTGAGC
1 CAGCACGCAAAGGGGGACCGGCTCGATCCCAGACTTGTGCATTCTAACTCTCCGGCTGGCTGAGC
* * * * *
12784634 GCCTGCACGTTCGTTTCGTGCGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
66 ACCTACACG-TCGATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12784693 CCCAGCCAGA
Statistics
Matches: 269, Mismatches: 39, Indels: 21
0.82 0.12 0.06
Matches are distributed among these distances:
194 4 0.01
195 119 0.44
196 91 0.34
197 51 0.19
198 4 0.01
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.25
Consensus pattern (196 bp):
CAGCACGCAAAGGGGGACCGGCTCGATCCCAGACTTGTGCATTCTAACTCTCCGGCTGGCTGAGC
ACCTACACGTCGATTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAGGA
GTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTACGACAACAAGACCAGCAGCAGGATTG
G
Found at i:12784864 original size:26 final size:26
Alignment explanation
Indices: 12784828--12784880 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12784818 GTTGACTTAG
12784828 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
12784854 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12784880 G
1 G
12784881 ATTGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12785388 original size:26 final size:26
Alignment explanation
Indices: 12785352--12785404 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12785342 GTTGACTTAC
*
12785352 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
12785378 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12785404 G
1 G
12785405 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12786077 original size:159 final size:156
Alignment explanation
Indices: 12785884--12786557 Score: 482
Period size: 158 Copynumber: 4.3 Consensus size: 156
12785874 CCCACACATC
* * * * *
12785884 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGTCGGACCGAAGG
1 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATATCTAAG-ACCAGTCGGACCGAGGG
* * * *
12785949 TTGTGGCAGCGGGACTGGCAGCACGTAGAGAGGGACCGGGCTGATCCCCAGCTTGTTCATTATGC
65 TTGTGGCAGCGGGACTGGCAGCACGTA-AGGGGGATCGGGCTGATCCCCGGCTTGTACATTATGC
12786014 CTCTTCGGTCGGCTCAACGCCTGAACGCT
129 CTCTTCGGTCGGCTCAACGCCTG-ACGCT
* * * * *
12786043 CATTTCGTGGATTGACTTAGGCATACGAAGTTCATTACCA-ATGTAAGATCAGATCGGACCGAGG
1 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATATCTAAGACCAG-TCGGACCGAGG
** * * * * * * *
12786107 GTTACGACAGCAGGA-TCGACAGCACATAAGGGGGATCGGGCTGATCCACGGCTTGCACATTCTG
64 GTTGTGGCAGCGGGACT-GGCAGCACGTAAGGGGGATCGGGCTGATCCCCGGCTTGTACATTATG
* * * * * * *
12786171 CCTCTCCGGTCTGTTGAGCGCCCGCACGCC
128 CCTCTTCGGTCGGCTCAACGCCTG-ACGCT
* * * * * * * *
12786201 CGTTTCATGGGCTGGCTTAGGCATAGGGAGTTCATTCCGTGTCTAAGTGCTAGTCGGACCGAGGG
1 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATATCTAAG-ACCAGTCGGACCGAGGG
* * * * * * *
12786266 TTGTGGTAGCGAGACAGGCAGTATGCAAAGGGGGATCGGG-TCGATCCCCGGCTTGTGCATTATG
65 TTGTGGCAGCGGGACTGGCAGCACG-TAAGGGGGATCGGGCT-GATCCCCGGCTTGTACATTATG
* * * *
12786330 CCTCTTCGATCGACTCAACACCCATG-TGCT
128 CCTCTTCGGTCGGCTCAAC-GCC-TGACGCT
* * * * *
12786360 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGAACCGAGG
1 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATATCTAAGACCAG-TCGGACCGAGG
* * * * * * * *
12786424 GTTGTGGTAGCAGGA-TCGACAGCACG-CAGGGAGGA-CAGGGCTGATCCCCGACTTATGCATTC
64 GTTGTGGCAGCGGGACT-GGCAGCACGTAAGGG-GGATC-GGGCTGATCCCCGGCTTGTACATTA
* * * ** * *
12786486 TGCTTCTTCGGCCGGCTGAGTGCCCGCATGCT
126 TGCCTCTTCGGTCGGCTCAACGCCTG-ACGCT
* * *
12786518 CATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
1 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAT
12786558 GCCTAAGCAT
Statistics
Matches: 392, Mismatches: 104, Indels: 39
0.73 0.19 0.07
Matches are distributed among these distances:
156 1 0.00
157 12 0.03
158 190 0.48
159 181 0.46
160 7 0.02
161 1 0.00
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (156 bp):
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATATCTAAGACCAGTCGGACCGAGGGT
TGTGGCAGCGGGACTGGCAGCACGTAAGGGGGATCGGGCTGATCCCCGGCTTGTACATTATGCCT
CTTCGGTCGGCTCAACGCCTGACGCT
Found at i:12786222 original size:158 final size:157
Alignment explanation
Indices: 12785746--12786238 Score: 452
Period size: 158 Copynumber: 3.1 Consensus size: 157
12785736 CCCGGTCTAA
* * * * *
12785746 GCATACAAAGTTCATTTCCAGTCTAAGATCAGATCAGACCGAAGGTTGC-AGTAGTAGGATCGGC
1 GCATACGAAGTTCA-TTCCAATCTAAGATCAGATCGGACCGAAGGTTGCGA-CAGCAGGATCGGC
* * * * * * *
12785810 AGCACGTAGGGGGGACCGGGCTGATCCCCAACTTGCGCATTCTGTCTCTCTGGCCAGTTGACCGC
64 AGCACGTAAGGGGGACCGGGCTGATCCCCAGCTTGCACATTCTGCCTCTCCGGTCAGTTGAACGC
* **
12785875 CCACACATCCGTTTCATGGGTTGGCTTAG
129 CCGCACGCCCGTTTCATGGGTTGGCTTAG
* * ** * * *
12785904 GCATAGGGAGTTCATTCCATATCTAAGCCCCAG-TCGGACCGAAGGTTGTGGCAGCGGGA-CTGG
1 GCATACGAAGTTCATTCCA-ATCTAAG-ATCAGATCGGACCGAAGGTTGCGACAGCAGGATC-GG
* ** * * * * *
12785967 CAGCACGTAGAGAGGGACCGGGCTGATCCCCAGCTTGTTCATTATGCCTCTTCGGTCGGCTCAAC
63 CAGCACGTA-AGGGGGACCGGGCTGATCCCCAGCTTGCACATTCTGCCTCTCCGGTCAGTTGAAC
* * * * * * *
12786032 GCCTGAACGCTCATTTCGTGGATTGACTTAG
127 GCCCGCACGCCCGTTTCATGGGTTGGCTTAG
* * * *
12786063 GCATACGAAGTTCATTACCAATGTAAGATCAGATCGGACCGAGGGTTACGACAGCAGGATCGACA
1 GCATACGAAGTTCATT-CCAATCTAAGATCAGATCGGACCGAAGGTTGCGACAGCAGGATCGGCA
* * * * * *
12786128 GCACATAAGGGGGATCGGGCTGATCCACGGCTTGCACATTCTGCCTCTCCGGTCTGTTGAGCGCC
65 GCACGTAAGGGGGACCGGGCTGATCCCCAGCTTGCACATTCTGCCTCTCCGGTCAGTTGAACGCC
*
12786193 CGCACGCCCGTTTCATGGGCTGGCTTAG
130 CGCACGCCCGTTTCATGGGTTGGCTTAG
* *
12786221 GCATAGGGAGTTCATTCC
1 GCATACGAAGTTCATTCC
12786239 GTGTCTAAGT
Statistics
Matches: 257, Mismatches: 70, Indels: 17
0.75 0.20 0.05
Matches are distributed among these distances:
157 8 0.03
158 130 0.51
159 115 0.45
160 4 0.02
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCAATCTAAGATCAGATCGGACCGAAGGTTGCGACAGCAGGATCGGCAG
CACGTAAGGGGGACCGGGCTGATCCCCAGCTTGCACATTCTGCCTCTCCGGTCAGTTGAACGCCC
GCACGCCCGTTTCATGGGTTGGCTTAG
Found at i:12786329 original size:317 final size:315
Alignment explanation
Indices: 12785746--12786565 Score: 892
Period size: 317 Copynumber: 2.6 Consensus size: 315
12785736 CCCGGTCTAA
* * * * * *
12785746 GCATACAAAGTTCATTTCCAGTCTAAGATCAGATCAGACCGAAGGTTGC-AGTAGTAGGATCGGC
1 GCATACGAAGTTCATTACCAGTCTAAGATCAGATCGGACCGAGGGTTGCGA-TAGCAGGATCGAC
* * * * *
12785810 AGCACGTAGGGGGGACCGGGCTGATCCCCAACTTGCGCATTCTGTCTCTCTGGCCAGTTGACCGC
65 AGCAC-TAAGGGGGA-CGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCAGTTGAGCGC
* ** *
12785875 CCACACATCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGTCG
128 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
* * * *
12785940 GACCGAAGGTTGTGGCAGCGGGACTGGCAGCACGTAGAGAGGGACCGGGCTGATCCCCAGCTTGT
193 GACCGAAGGTTGTGGCAGCGAGACAGGCAGCACGCAAAGAGGGACCGGGCTGATCCCCAGCTTGT
* * * *
12786005 TCATTATGCCTCTTCGGTCGGCTCAAC-GCC-TGAACGCTCATTTCGTGGATTGACTTAG
258 GCATTATGCCTCTTCGATCGACTCAACACCCATG--CGCTCATTTCGTGGATTGACTTAG
* * * *
12786063 GCATACGAAGTTCATTACCAATGTAAGATCAGATCGGACCGAGGGTTACGACAGCAGGATCGACA
1 GCATACGAAGTTCATTACCAGTCTAAGATCAGATCGGACCGAGGGTTGCGATAGCAGGATCGACA
* * * * *
12786128 GCACATAAGGGGGATCGGGCTGATCCACGGCTTGCACATTCTGCCTCTCCGGTCTGTTGAGCGCC
66 GCAC-TAAGGGGGA-CGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCAGTTGAGCGCC
* * ** *
12786193 CGCACGCCCGTTTCATGGGCTGGCTTAGGCATAGGGAGTTCATTCCGTGTCTAAGTGCTAGTCGG
129 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
* * * * * * *
12786258 ACCGAGGGTTGTGGTAGCGAGACAGGCAGTATGCAAAGGGGGATCGGG-TCGATCCCCGGCTTGT
194 ACCGAAGGTTGTGGCAGCGAGACAGGCAGCACGCAAAGAGGGACCGGGCT-GATCCCCAGCTTGT
* * *
12786322 GCATTATGCCTCTTCGATCGACTCAACACCCATGTGCTCGTTTCGTGGGTTGACTTAG
258 GCATTATGCCTCTTCGATCGACTCAACACCCATGCGCTCATTTCGTGGATTGACTTAG
* * * * * * *
12786380 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGAAGTTCATTACCAGTCTAAGATCAGATCGGACCGAGGGTTGCGATAGCAGGATCGACA
** ** * * * * *
12786445 GCACGCAGGGAGGACAGGGCTGATCCCCGACTTATGCATTCTGCTTCTTCGGCCGGCTGAGTGCC
66 GCACTAAGGG-GGAC-GGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCAGTTGAGCGCC
* * * ** * *
12786510 CGCATGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGC
129 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
12786566 ATACGAAGTT
Statistics
Matches: 414, Mismatches: 83, Indels: 12
0.81 0.16 0.02
Matches are distributed among these distances:
316 6 0.01
317 403 0.97
318 3 0.01
319 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (315 bp):
GCATACGAAGTTCATTACCAGTCTAAGATCAGATCGGACCGAGGGTTGCGATAGCAGGATCGACA
GCACTAAGGGGGACGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCAGTTGAGCGCCCG
CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC
CGAAGGTTGTGGCAGCGAGACAGGCAGCACGCAAAGAGGGACCGGGCTGATCCCCAGCTTGTGCA
TTATGCCTCTTCGATCGACTCAACACCCATGCGCTCATTTCGTGGATTGACTTAG
Found at i:12786951 original size:26 final size:26
Alignment explanation
Indices: 12786920--12786970 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
12786910 TAACTTAGGC
12786920 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAGTCTAAGT
*
12786946 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
12786971 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGT
Found at i:12793185 original size:26 final size:26
Alignment explanation
Indices: 12793155--12793207 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12793145 GTTGACTTAG
*
12793155 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTATAA
* *
12793181 GCATACGGAGTTCATTCCTAGTATAA
1 GCATACAGAGTTCATTCCCAGTATAA
12793207 G
1 G
12793208 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTATAA
Found at i:12793734 original size:14 final size:14
Alignment explanation
Indices: 12793715--12793743 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
12793705 GATCGGATCG
12793715 GACTGAGGGATGCA
1 GACTGAGGGATGCA
12793729 GACTGAGGGATGCA
1 GACTGAGGGATGCA
12793743 G
1 G
12793744 CAGCATTGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.14, G:0.45, T:0.14
Consensus pattern (14 bp):
GACTGAGGGATGCA
Found at i:12793878 original size:26 final size:26
Alignment explanation
Indices: 12793848--12793899 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12793838 GTTGGCTTAG
12793848 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
12793874 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
12793900 AATTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:12794383 original size:26 final size:26
Alignment explanation
Indices: 12794347--12794399 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12794337 GTTAGCTTAG
12794347 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
12794373 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
12794399 G
1 G
12794400 AGTTCGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:12795102 original size:26 final size:26
Alignment explanation
Indices: 12795066--12795118 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12795056 GTTGACTTAG
12795066 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
12795092 GCATGCAGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12795118 G
1 G
12795119 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12795433 original size:26 final size:26
Alignment explanation
Indices: 12795397--12795449 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12795387 GTTGGCTTAG
12795397 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
12795423 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
12795449 G
1 G
12795450 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:12796528 original size:26 final size:26
Alignment explanation
Indices: 12796492--12796541 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
12796482 GACTTAGGTA
12796492 TACGGAGTTCATCCCCAGTCTAAGTG
1 TACGGAGTTCATCCCCAGTCTAAGTG
*
12796518 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
12796542 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGTG
Found at i:12797118 original size:353 final size:356
Alignment explanation
Indices: 12796449--12797148 Score: 865
Period size: 353 Copynumber: 2.0 Consensus size: 356
12796439 CCTCTCTGGT
* * * * *
12796449 CGGCTGAGCGCTCGCACTCTCTTTTCGTGGGTTGACTTAGGTATACGGAGTTCATCCCCAGTCTA
1 CGGCTGAGCGCCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
*
12796514 AGTGTACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGTAGGATCGAC
66 AGTGTACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGTAGGATCGAC
* * * * * ** * *
12796579 AACACGCAGGGTGGACCGGGCAGGTCCCCGGCTTGCGCATTTTGCCTCTCCGGTCTGCTGAGCGC
131 AACACGCAGGGTGGACCAGGCAGGTCCCCGACTTGCACATTCTACCTCTCCGACCGGCTGAGCAC
* * *
12796644 CCACACACTCATTTCGTGGGTTTGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCCG
196 CCACACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAACCG
* * * * *
12796709 GACCGAGACTTGTGGCAGCGGGATCGGCGGCACGTAGAGGGGGATCGGGTCGATCCCCAACTTAT
261 GACCGAGACTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGATCGGGCCGATCCCCAACTTAC
* *
12796774 GCATTATGCCTCTTTGGCCGGCCTCTCCGAC
326 GCATTATGCCTCTCTGACCGGCCTCTCCGAC
* *
12796805 CGGCTGAGTGCCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTA
1 CGGCTGAGCGCCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* *
12796870 AG-GATACGAAG-TCATTCCCAGTCTAAGATCGGACC-AGACCGAGGGTTGCGGCAGTAGGATCG
66 AGTG-TACGAAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGACAGTAGGATCG
* * * * *
12796932 ACAACATGCAGGG-GG-TCAGGCTGGTCCCTGACTTGCACATTCTACCTTTCCGACCGGCTGAGC
129 ACAACACGCAGGGTGGACCAGGCAGGTCCCCGACTTGCACATTCTACCTCTCCGACCGGCTGAGC
* * * * * * *
12796995 ACCCGCACGCCCGTTTTGTGGGTTGGCTTTGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAAC
194 ACCCACACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAAC
* ** * * * * **
12797060 CGGATCGAGGGTTGTGGTAGTATGA-CAGGCAGCATGCAGAGGGGGA-CTGGGCCGATCCCCGGC
259 CGGACCGAGACTTGTGGCAGCAGGATC-GGCAGCACGCAGAGGGGGATC-GGGCCGATCCCCAAC
12797123 TTACGCATTATGCCTCTCTGACCGGC
322 TTACGCATTATGCCTCTCTGACCGGC
12797149 TCAGCGCCCG
Statistics
Matches: 290, Mismatches: 50, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
352 2 0.01
353 159 0.55
354 3 0.01
355 60 0.21
356 66 0.23
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (356 bp):
CGGCTGAGCGCCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
AGTGTACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGTAGGATCGAC
AACACGCAGGGTGGACCAGGCAGGTCCCCGACTTGCACATTCTACCTCTCCGACCGGCTGAGCAC
CCACACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAACCG
GACCGAGACTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGATCGGGCCGATCCCCAACTTAC
GCATTATGCCTCTCTGACCGGCCTCTCCGAC
Found at i:12797724 original size:159 final size:159
Alignment explanation
Indices: 12797432--12797727 Score: 357
Period size: 159 Copynumber: 1.9 Consensus size: 159
12797422 AACAGGACCA
* * * * *
12797432 GCAGCAGGATCGGCAGCACGTAGGGGGGGACCGAGTTGATCCCCGCCTTGCATATTCTGCCTCTC
1 GCAGCAGGACCGGCAGCACGTAGAGAGGGACCGAGCTGATCCCCGCCTTGCATATTATGCCTCTC
** * * * *
12797497 CAGCCAACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACCGAGTTCATTCCATG
66 CAGCCAACTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACCGAGTTCATCCCATG
12797562 TCTAAGCCCCAGCCAGATCGAGGGTTGTG
131 TCTAAGCCCCAGCCAGATCGAGGGTTGTG
* * * *
12797591 GCAGCAGGACCGGCAGCATGTAGAGAGGGATCGGGCTGATCCCCGGCTTGC-TCATTATGCCTCT
1 GCAGCAGGACCGGCAGCACGTAGAGAGGGACCGAGCTGATCCCCGCCTTGCAT-ATTATGCCTCT
* * * *
12797655 CCGGCCAGCTGAGCACCCACATGCTCA-TTCTGTGGGTTGACTTAGGCAT-CTGCAGTTCATCCC
65 CCAGCCAACTGAGCACCCACACGCTCATTTC-GTGGGTTGACTTAGGCATACCG-AGTTCATCCC
12797718 -TAGTCTAAGC
128 AT-GTCTAAGC
12797728 ATACGGAGTT
Statistics
Matches: 114, Mismatches: 19, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
158 7 0.06
159 107 0.94
ACGTcount: A:0.18, C:0.30, G:0.29, T:0.23
Consensus pattern (159 bp):
GCAGCAGGACCGGCAGCACGTAGAGAGGGACCGAGCTGATCCCCGCCTTGCATATTATGCCTCTC
CAGCCAACTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACCGAGTTCATCCCATG
TCTAAGCCCCAGCCAGATCGAGGGTTGTG
Found at i:12798069 original size:343 final size:346
Alignment explanation
Indices: 12797314--12798069 Score: 812
Period size: 343 Copynumber: 2.2 Consensus size: 346
12797304 CGACTGTGCG
* *
12797314 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CGATGTCTAAGCATACGG
1 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCG--GTCTAAGCATACGG
*
12797378 AGTTCATTCCTAGTCTAAGATCGGATCAGATCGAGGGTTGCAGCAACAGGACCAGCAGCAGGATC
64 AGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTT--AG--ACA-G---AGCAGCAGGATC
* * * * * *
12797443 GGCAGCACGTAGGGGGGGACCGAGTTGATCCCCGCCTTGCATATTCTGCCTCTCCAGCCAACTGA
121 GACAGCACGCAGGGAGGGACCAAGTTGATCCCCGCCTTGCA-ACTCTACCTCTCCAGCCAACTGA
* * * * *
12797508 GTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACCGAGTTCATTCCATGTCTAAGCCCCA
185 GCGCCCGCACACCCGTTTCATGGGTTGGATTAGGCATACCGAGTTCATTCCATGTCTAAGCCCCA
* * * * *
12797573 GCCAGATCGAGGGTTGTGGCAGCAGGACCGGCAGCATGTAGAGAGGGATCGGGCTGATCCCCGGC
250 GCCAGACCGAGGGTTATGGCAACAGGACCGGCAGCATGCAAAGAGGGATCGGGCTGATCCCCGGC
* *
12797638 TTGCTCATTATGCCTCTCCGGCCAGCTGAGCA
315 TTGCTCATTATGCCTCTCCGACCAGCTCAGCA
* * * * * * *
12797670 CCCACATGCTCA-TTCTGTGGGTTGACTTAGGCATCTGCAGTTCATCCCTAGTCTAAGCATACGG
1 CCCGCACGCTCATTTC-ATGGGTTGACTTAGGCATATGGAGTTCATTCC-GGTCTAAGCATACGG
* * *
12797734 AGTTCATTCCCAGTCTAAGATCGGATCAGATCGATGGTT-G-C-G-GCAGTAGGATCGACAGCAT
64 AGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTAGACAGAGCAGCAGGATCGACAGCAC
* * * **
12797795 GCA-GGAGGGACCAAGTTGATCCTCGGCTTATGC-ACTCTACCTTTCC-GACCGGCTGAGCGCCC
129 GCAGGGAGGGACCAAGTTGATCC-CCGCCT-TGCAACTCTACCTCTCCAG-CCAACTGAGCGCCC
* ** *
12797857 GTACACCCGTTTCATGGGTTGGATTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGA
191 GCACACCCGTTTCATGGGTTGGATTAGGCATACCGAGTTCATTCCATGTCTAAGCCCCAGCCAGA
* * * * * * *
12797922 CCGAGGGTTATGGTAACGGGATCGGTAGCATGCAAAGAGGGATCGGGTTGATGCTCGGCTTG-TG
256 CCGAGGGTTATGGCAACAGGACCGGCAGCATGCAAAGAGGGATCGGGCTGATCCCCGGCTTGCT-
* * * *
12797986 CATTATTCCTCTCCGATCGGCTCAGCT
320 CATTATGCCTCTCCGACCAGCTCAGCA
*
12798013 CCCGTACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATTACCGGTCTAAG
1 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATT-CCGGTCTAAG
12798070 ATCGAATCGG
Statistics
Matches: 332, Mismatches: 59, Indels: 31
0.79 0.14 0.07
Matches are distributed among these distances:
342 2 0.01
343 208 0.63
344 27 0.08
345 3 0.01
348 1 0.00
350 1 0.00
353 1 0.00
355 3 0.01
356 85 0.26
357 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (346 bp):
CCCGCACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCGGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTAGACAGAGCAGCAGGATCGACAGCACGC
AGGGAGGGACCAAGTTGATCCCCGCCTTGCAACTCTACCTCTCCAGCCAACTGAGCGCCCGCACA
CCCGTTTCATGGGTTGGATTAGGCATACCGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAG
GGTTATGGCAACAGGACCGGCAGCATGCAAAGAGGGATCGGGCTGATCCCCGGCTTGCTCATTAT
GCCTCTCCGACCAGCTCAGCA
Found at i:12798089 original size:858 final size:846
Alignment explanation
Indices: 12796428--12798500 Score: 2214
Period size: 858 Copynumber: 2.4 Consensus size: 846
12796418 ATCCCCGACT
* * * * * * * * * *
12796428 TACGCATCCTGCCTCTCTGGTCGGCTGAGCGCTCGCACTCTCTTTTCGTGGGTTGACTTAGGTAT
1 TACGCATTCTGCCTCCCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCAT
* ** * * *
12796493 ACGGAGTTCATCCCCA-GTCTAAGTGTACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGA
66 ACGGAGTTCATTCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCGGACAGAACCGA
* * * * * * * * * * * * * *
12796557 GGGTTGCGACAGTAGGATCGACAACACGCAGGGTGGACCGGGCAGGTCCCCGGCTTGCGCATTTT
131 GGGTTCCAACAGCAAGATCGACAGCACGCAGGGGGGACCGAGCTGATTCCCAGCCTGTGCATTCT
* * * * * *
12796622 GCCTCTCCGGTCTG-CTGAGCGCCCACACACTCATTTCGTGGGTTTGCTTAGGCATAGGGAGTTC
196 GCCTCTCC-GACAGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTC
* ** * *
12796686 ATTCCAAGTCTAAGCCCCAGCCGGACCGAGACTTGTGGCAGCGGGATCGGCGGCACGTAGAGGGG
260 ATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGGGG
** * *
12796751 GATCGGG-TCGATCCCCAACTT-ATGCATTATGCCTCTTTGGCCGGCCTCTCCGACCGGCTGAGT
325 GATCGGGCT-GATCCCCGGCTTGCT-CATTATGCCTC--T-GCCGG---C-CCGA-C-GCTGAGC
* * * *
12796814 GCCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGGATACGA
379 ACCCACACGCTCATTCCGTGGGTTGACTTAGGCATACGCAGTTCATCTCCAGTCTAAGCATACGA
12796879 AGTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGACAACATGCAGG
444 AGTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGACAACATGCAGG
* * * *
12796944 GGGTCAGGCTGGTCCCTGACTTGCACATTCTACCTTTCCGACCGGCTGAGCACCCGCACGCCCGT
509 GGGCCAAGCTGATCCCTGACTTGCACA-TCTACCTTTCCGACCGGCTGAGCACCCGCACACCCGT
** * * * * *
12797009 TTTGTGGGTTGGCTTTGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAACCGGATCGAGGGTTG
573 TTCATGGGTTGGATTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAACCAGACCGAGGGTTA
** * * *
12797074 TGGTAGTATGACAGGCAGCATGCAGAGGGGGACTGGGCCGATCCCCGGCTTACGCATTATGCCTC
638 TGGTAACAGGACAGGCAGCATGCAAAGAGGGACTGGGCCGATCCCCGGCTTACGCATTATGCCTC
* * * *
12797139 TCTGACCGGCTCAGCGCCCGCACGCTCGTTTCGTAGATTGACTTAGGCATACAGAGTTCATTCCC
703 TCCGACCGGCTCAGCGCCCGCACGCTCATTTCATAGATTGACTTAGGCATACAGAGTTCATTACC
* * * * * *
12797204 AGTCTAAGATCAGACTGCACTGAGGGTTGCGACAGCAAGGATCGACGGCACGCAG-GGGGGACTG
768 AGTCTAAGATCAGAATGCACAGAGGGTTGCGACAGC-AGAATCGACAGCACGCAGTGGGGCACCG
**
12797268 GGCTGATCCCTGGCA
832 GGCCAATCCCTGGCA
* * * *
12797283 TGCGCATTCTGCCT-CTTCGGTCGACTGTGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCA
1 TACGCATTCTGCCTCCCT-GGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCA
* * * *
12797347 TACGGAGTTCATT-CGATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCAG-ATC
65 TACGGAGTTCATTCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCGGA-CAGAACC
* * *
12797410 GAGGGTTGCAGCAACAGGACCAGCAGCAGGATCGGCAGCACGTAGGGGGGGACCGAGTTGA-TCC
129 GAGGGTT----C--CA--A-CAGCA--A-GATCGACAGCACGCA-GGGGGGACCGAGCTGATTCC
* * *
12797474 CCGCCT-TGCATATTCTGCCTCTCCAGCCA-ACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGC
181 CAGCCTGTGC--ATTCTGCCTCTCC-GACAGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGC
** * * *
12797537 TTAGGCATACCGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCAGGACC
243 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACC
* *
12797602 GGCAGCATGTAGAGAGGGATCGGGCTGATCCCCGGCTTGCTCATTATGCCTCT-CCGG-CC-A-G
308 GGCAGCACGTAGAGGGGGATCGGGCTGATCCCCGGCTTGCTCATTATGCCTCTGCCGGCCCGACG
* *
12797663 CTGAGCACCCACATGCTCATTCTGTGGGTTGACTTAGGCAT-CTGCAGTTCATC-CCTAGTCTAA
373 CTGAGCACCCACACGCTCATTCCGTGGGTTGACTTAGGCATAC-GCAGTTCATCTCC-AGTCTAA
* * * *
12797726 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGATGGTTGCGGCAGTAGGATCGACA
436 GCATACGAAG-TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGACA
* * * *
12797791 GCATGCAGGAGGGACCAAGTTGAT-CCTCGGCTTATGCAC-TCTACCTTTCCGACCGGCTGAGCG
500 ACATGCAGG-GGG-CCAAGCTGATCCCT-GAC-T-TGCACATCTACCTTTCCGACCGGCTGAGCA
* *
12797854 CCCGTACACCCGTTTCATGGGTTGGATTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCC
560 CCCGCACACCCGTTTCATGGGTTGGATTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAACC
* * ** * *
12797919 AGACCGAGGGTTATGGTAACGGGATC-GGTAGCATGCAAAGAGGGA-TCGGGTTGATGCTCGGCT
625 AGACCGAGGGTTATGGTAACAGGA-CAGGCAGCATGCAAAGAGGGACT-GGGCCGATCCCCGGCT
** * * * * * *
12797982 TGTGCATTATTCCTCTCCGATCGGCTCAGCTCCCGTACGCTCATTTCATGGGTTGACTTAGGCAT
688 TACGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCATAGATTGACTTAGGCAT
** * * * *
12798047 ATGGAGTTCATTACCGGTCTAAGATC-GAATCGGACAGAGGGTTGCGACAGCCGAATCGATAGCA
753 ACAGAGTTCATTACCAGTCTAAGATCAGAAT-GCACAGAGGGTTGCGACAGCAGAATCGACAGCA
*
12798111 CGCAGTGGGGCACCGGGCCAATCCCTGGCT
817 CGCAGTGGGGCACCGGGCCAATCCCTGGCA
* * * *
12798141 TACGCATTCTGCCTCCCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTATGCAT
1 TACGCATTCTGCCTCCCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCAT
* *
12798206 ACGGAGTTTATTCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCGGACCGAACCGA
66 ACGGAGTTCATTCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCGGACAGAACCGA
* * *
12798271 GGGTTCCAACAGCAAGATCGATAGCACGCAGGGGGGACCGGGCTGATTCCCAGCTTGTGCATTCT
131 GGGTTCCAACAGCAAGATCGACAGCACGCAGGGGGGACCGAGCTGATTCCCAGCCTGTGCATTCT
** ** * * *
12798336 GTGTCTCCGACAGGTTGAGCGCCCGCACGCCCGTTTCATGGGTTGGTTTAGGCATAGGGAGTTCA
196 GCCTCTCCGACAGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
* *
12798401 TTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCATAGGGGG
261 TTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGGGGG
* *
12798466 A-CTAGGCCGATCCCCGGCTTGCGT-ATTATGCCTCT
326 ATC-GGGCTGATCCCCGGCTTGC-TCATTATGCCTCT
12798501 TCGGTCAGTT
Statistics
Matches: 1010, Mismatches: 167, Indels: 91
0.80 0.13 0.07
Matches are distributed among these distances:
845 4 0.00
846 156 0.15
847 20 0.02
848 4 0.00
850 5 0.00
851 1 0.00
853 2 0.00
854 6 0.01
855 168 0.17
856 61 0.06
857 24 0.02
858 315 0.31
859 55 0.05
860 5 0.00
861 1 0.00
863 1 0.00
864 8 0.01
866 3 0.00
867 18 0.02
868 151 0.15
869 2 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (846 bp):
TACGCATTCTGCCTCCCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCGGACAGAACCGA
GGGTTCCAACAGCAAGATCGACAGCACGCAGGGGGGACCGAGCTGATTCCCAGCCTGTGCATTCT
GCCTCTCCGACAGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
TTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGGGGG
ATCGGGCTGATCCCCGGCTTGCTCATTATGCCTCTGCCGGCCCGACGCTGAGCACCCACACGCTC
ATTCCGTGGGTTGACTTAGGCATACGCAGTTCATCTCCAGTCTAAGCATACGAAGTCATTCCCAG
TCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGACAACATGCAGGGGGCCAAGCTGA
TCCCTGACTTGCACATCTACCTTTCCGACCGGCTGAGCACCCGCACACCCGTTTCATGGGTTGGA
TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAACCAGACCGAGGGTTATGGTAACAGGACA
GGCAGCATGCAAAGAGGGACTGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTCA
GCGCCCGCACGCTCATTTCATAGATTGACTTAGGCATACAGAGTTCATTACCAGTCTAAGATCAG
AATGCACAGAGGGTTGCGACAGCAGAATCGACAGCACGCAGTGGGGCACCGGGCCAATCCCTGGC
A
Found at i:12798399 original size:503 final size:502
Alignment explanation
Indices: 12797720--12798759 Score: 1223
Period size: 503 Copynumber: 2.1 Consensus size: 502
12797710 TTCATCCCTA
* * * * ** * *
12797720 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGATGGTTGCGGCAGTAGGA
1 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTCCAACAGCAAGA
* * * * *
12797785 TCGACAGCATGCAGGAGGGACCAAGTTGATCCTCGGCTTATGCACTCTACCTTTCCGACCGGCTG
66 TCGACAGCACGCAGGAGGGACCAAGCTGATCCTCAGCTTATGCACTCTACCTCTCCGACAGGCTG
* *
12797850 AGCGCCCGTACACCCGTTTCATGGGTTGGATTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCT
131 AGCGCCCGCACACCCGTTTCATGGGTTGGATTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
* * * * * ** * *
12797915 AGCCAGACCGAGGGTTATGGTAACGGGATCGGTAGCATGCAAAGAGGGA-TCGGGTTGATGCTCG
196 AGCCAGACCGAGGGTTATGGCAACGGGACCGGCAGCACGCAAAGAGGGACT-AGGCCGATCCCCG
* * * *
12797979 GCTTGTGCATTATTCCTCTCCGATCGGCTCAGCTCCCGTACGCTCATTTCATGGGTTGACTTAGG
260 GCTTGCGCATTATGCCTCTCCGATCAGCTCAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGG
* * * *
12798044 CATATGGAGTTCATTACCGGTCTAAGATCGA-ATCGGACAGAGGGTTGC-GACAGCCGAATCGAT
325 CATACGGAGTTCATTACCAGTCTAAGAT-GAGATCGGACAGAGGGTTGCAG-CAGCAGAATCGAC
* * ** *
12798107 AGCACGCAGTGGGGCACCGGGCCAATCC-CTGGCTTACGCATTCTGCCTCC-CTGGCC-GGCTGA
388 AGCACGCAG-GGGGCACCGGGCCAATCCTC-GACTTACGCATTCTGCCTCCTC-AGCCAAACTAA
* * * *
12798169 GTGCCCGCACGCTCGTTTCATGGGTTGGCTTATGCATACGGAGTTTATTCCCAT
450 GCGCCAGCACGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATT-CCAT
*
12798223 GTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCGGACC-GAACCGAGGGTTCCAACAGCAAG
1 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTCCAACAGCAAG
* * ** * * *** *
12798287 ATCGATAGCACGCAGGGGGGACCGGGCTGATTCC-CAGCTTGTGCATTCTGTGTCTCCGACAGGT
65 ATCGACAGCACGCAGGAGGGACCAAGCTGA-TCCTCAGCTTATGCACTCTACCTCTCCGACAGGC
* *
12798351 TGAGCGCCCGCACGCCCGTTTCATGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
129 TGAGCGCCCGCACACCCGTTTCATGGGTTGGATTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * * * *
12798416 CCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCATAGGGGGACTAGGCCGATCCCC
194 CCAGCCAGACCGAGGGTTATGGCAACGGGACCGGCAGCACGCAAAGAGGGACTAGGCCGATCCCC
* * * * * * *
12798481 GGCTTGCGTATTATGCCTCTTCGGTCAGTTCAGCGCCCGTACGCTCGTTTCATGGGTTGAGTTAT
259 GGCTTGCGCATTATGCCTCTCCGATCAGCTCAGCGCCCGTACGCTCATTTCATGGGTTGACTTAG
* * * *
12798546 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACAGAGGGTTGCAGCAGCAGGATTGACA
324 GCATACGGAGTTCATTACCAGTCTAAGATGAGATCGGACAGAGGGTTGCAGCAGCAGAATCGACA
* * * * *
12798611 GCACGCAGGGGGGATCGGGCCAATCCTCGATTTGCGCATTCTGCCTCTTCAGCCAAACTAAGCGC
389 GCACGCAGGGGGCACCGGGCCAATCCTCGACTTACGCATTCTGCCTCCTCAGCCAAACTAAGCGC
* * *
12798676 CAGCACGCTCGTTTCGTGGGTTGGCTTAAGTATATGGAGTTCATTCCAT
454 CAGCACGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCAT
* *
12798725 GTCTAAGCATACGGAGTTAATTCTCAGTCTAAGAT
1 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
12798760 TTTGAGCCAC
Statistics
Matches: 448, Mismatches: 81, Indels: 17
0.82 0.15 0.03
Matches are distributed among these distances:
502 73 0.16
503 370 0.83
504 5 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (502 bp):
GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTCCAACAGCAAGA
TCGACAGCACGCAGGAGGGACCAAGCTGATCCTCAGCTTATGCACTCTACCTCTCCGACAGGCTG
AGCGCCCGCACACCCGTTTCATGGGTTGGATTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
AGCCAGACCGAGGGTTATGGCAACGGGACCGGCAGCACGCAAAGAGGGACTAGGCCGATCCCCGG
CTTGCGCATTATGCCTCTCCGATCAGCTCAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGC
ATACGGAGTTCATTACCAGTCTAAGATGAGATCGGACAGAGGGTTGCAGCAGCAGAATCGACAGC
ACGCAGGGGGCACCGGGCCAATCCTCGACTTACGCATTCTGCCTCCTCAGCCAAACTAAGCGCCA
GCACGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCAT
Found at i:12798613 original size:159 final size:158
Alignment explanation
Indices: 12798229--12798731 Score: 388
Period size: 159 Copynumber: 3.2 Consensus size: 158
12798219 CCATGTCTAA
* * * * * * *
12798229 GCATACGGAGTTCATTCCCAGTCAAAGATCGGACCGAACCGAGGGTTCCAACAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACA
* * * * * * ** *
12798294 GCACGCAGGGGGGACCGGGCTGATTCCCAGCTTGTGCATTCTGTGTCTCCGACAGGTTGAGCGCC
66 GCACGCAAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACAGGTTCAGCGCC
12798359 CGCACGCCCGTTTCATGGGTTGGTTTAG
131 CGCACGCCCGTTTCATGGGTTGGTTTAG
* ** ** * * *
12798387 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGA
* * * * *
12798450 CAGCACGCATAGGGGGACTAGGCCGATCCCCGGCTTGCGTATTATGCCTCTTCGGTCA-GTTCAG
64 CAGCACGCA-AGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTC-TCCGACAGGTTCAG
* * *
12798514 CGCCCGTACGCTCGTTTCATGGGTTGAG-TTAT
127 CGCCCGCACGCCCGTTTCATGGGTTG-GTTTAG
* * * *
12798546 GCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACAGAGGGTTGCAGCAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACA
* * * * * * * * * *** *
12798611 GCACGCAGGGGGGATCGGGCCAATCCTC-GATTTGCGCATTCTGCCTCTTCAGCCAAACTAAGCG
66 GCACGCAAGGGGGACCAGGCCGATCCCCAG-CTTGCGCATTATGCCTC-TCCGACAGGTTCAGCG
* * * * *
12798675 CCAGCACGCTCGTTTCGTGGGTTGGCTTAA
129 CCCGCACGCCCGTTTCATGGGTTGGTTTAG
* *
12798705 GTATATGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
12798732 CATACGGAGT
Statistics
Matches: 270, Mismatches: 64, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
157 4 0.01
158 91 0.34
159 166 0.61
160 9 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACA
GCACGCAAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACAGGTTCAGCGCC
CGCACGCCCGTTTCATGGGTTGGTTTAG
Found at i:12798740 original size:26 final size:26
Alignment explanation
Indices: 12798702--12798757 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
12798692 TGGGTTGGCT
* * *
12798702 TAAGTATATGGAGTTCATTC-CATGTC
1 TAAGCATACGGAGTTAATTCTCA-GTC
12798728 TAAGCATACGGAGTTAATTCTCAGTC
1 TAAGCATACGGAGTTAATTCTCAGTC
12798754 TAAG
1 TAAG
12798758 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (26 bp):
TAAGCATACGGAGTTAATTCTCAGTC
Found at i:12798845 original size:11 final size:11
Alignment explanation
Indices: 12798827--12798859 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
12798817 CCCGGGGCAC
12798827 CATCGTCGGAG
1 CATCGTCGGAG
*
12798838 CGTCGTCGGAG
1 CATCGTCGGAG
12798849 CATCGTCGGAG
1 CATCGTCGGAG
12798860 AGCCTAACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.15, C:0.27, G:0.39, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:12799472 original size:26 final size:26
Alignment explanation
Indices: 12799436--12799488 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12799426 GTTGACTTAG
12799436 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
12799462 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12799488 G
1 G
12799489 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12799964 original size:26 final size:26
Alignment explanation
Indices: 12799935--12799987 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12799925 GTTGGCTTAG
12799935 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12799961 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12799987 G
1 G
12799988 ATCAGATCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12800298 original size:25 final size:26
Alignment explanation
Indices: 12800263--12800314 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
12800253 GTTGACTTAG
*
12800263 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12800288 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12800314 G
1 G
12800315 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12800774 original size:158 final size:158
Alignment explanation
Indices: 12800384--12800801 Score: 444
Period size: 159 Copynumber: 2.6 Consensus size: 158
12800374 AATCCCCGGT
* * * * * * * *
12800384 CGATCCCCGGCTTGTGCATTCTACCTCTCCGATCGACTGAGTGCCCGTACGCCCGTTTCGTGTGT
1 CGATCCCTGACTTGCGCATTCTACCTCTCCGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGT
* * * * *
12800449 TGGCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTACGGTAGCAG
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCAGCCAGATCGAGGGTTACGGCAGCAG
* *
12800514 GACCGGCAGTACGCAGAGGGGGACCGGCC
130 GACCGACAGCACGCAGAGGGGGACCGGCC
* * * * ** * * * ** * * *
12800543 CGATCCCTGGCCTGCGTATTATGTCTCTCCGGCCAGCTCAGCACCCGCATGCTTGTTTCATGGGT
1 CGATCCCTGACTTGCGCATTCTACCTCTCCGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGT
* * * * *
12800608 TGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGATTGAGGGTTGCGGCAGTA
66 TGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAG-CCAGATCGAGGGTTACGGCAGCA
* * *
12800672 GGATCGACAGCACGCAG-GGGGGACTGGGC
129 GGACCGACAGCACGCAGAGGGGGACCGGCC
* *
12800701 CGATCCTTGACTTGCGCATTCTACCTCTCCGGTCGGCTGAGTGCTCGCACGCTCGTTTCGTGGGT
1 CGATCCCTGACTTGCGCATTCTACCTCTCCGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGT
12800766 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGA
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGA
12800802 ATACGGAGTT
Statistics
Matches: 204, Mismatches: 52, Indels: 7
0.78 0.20 0.03
Matches are distributed among these distances:
157 3 0.01
158 93 0.46
159 105 0.51
160 3 0.01
ACGTcount: A:0.17, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
CGATCCCTGACTTGCGCATTCTACCTCTCCGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGCCAGATCGAGGGTTACGGCAGCAGG
ACCGACAGCACGCAGAGGGGGACCGGCC
Found at i:12800812 original size:26 final size:26
Alignment explanation
Indices: 12800776--12800827 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12800766 TGGCTTAGGC
12800776 ATACGGAGTTCATTCC-ATGTCTAAGA
1 ATACGGAGTTCATTCCTA-GTCTAAGA
12800802 ATACGGAGTTCATTCCTAGTCTAAGA
1 ATACGGAGTTCATTCCTAGTCTAAGA
12800828 TCGGACCGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCTAGTCTAAGA
Found at i:12801190 original size:26 final size:26
Alignment explanation
Indices: 12801154--12801206 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12801144 GTTAACTTAG
*
12801154 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12801180 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12801206 G
1 G
12801207 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12801521 original size:159 final size:158
Alignment explanation
Indices: 12801180--12801534 Score: 344
Period size: 159 Copynumber: 2.2 Consensus size: 158
12801170 CCCAGTCTAA
* * * * *
12801180 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTGTGATAGCAGGATCGGTA
1 GCATACGGAGTTTATTCCCAGTCTAAGACCAGACCGGACCGAAGGTTGTGACAGCAGGACCGGTA
* * * *
12801245 GCACACAGAGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCC
66 GCACACAGAGGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGATCGGCTCAGCGCC
*
12801310 CGCACACCTATTTAATGGGTTGGCTTAG
131 CGCACACCTATTTAATGGGTTGACTTAG
* * * * * *
12801338 CCATAGGGAGTTCT-TT-CTATGTCTAA-ACCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGACC
1 GCATACGGAGTT-TATTCCCA-GTCTAAGA--CCAGACCGGACCGAAGGTTGTGACAGCAGGACC
** ** * *
12801399 GGTAGCATGCAGAGGGGGACTGGGTCGATCCTCGGCTTACGCATTATGCCTCTTCGATCGGCTCA
62 GGTAGCACACAGA-GGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGATCGGCTCA
* * * **
12801464 GTG-CC-TACGCGCTCATTTCGTGGGTTGACTTAG
126 GCGCCCGCACAC-CT-ATTTAATGGGTTGACTTAG
* *
12801497 GCATACGGAGTTTATTCCCAGTCTAAGATCAGATCGGA
1 GCATACGGAGTTTATTCCCAGTCTAAGACCAGACCGGA
12801535 TCAAGGGTTG
Statistics
Matches: 154, Mismatches: 32, Indels: 21
0.74 0.15 0.10
Matches are distributed among these distances:
157 6 0.04
158 59 0.38
159 86 0.56
160 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTTATTCCCAGTCTAAGACCAGACCGGACCGAAGGTTGTGACAGCAGGACCGGTA
GCACACAGAGGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGATCGGCTCAGCGCC
CGCACACCTATTTAATGGGTTGACTTAG
Found at i:12801543 original size:159 final size:157
Alignment explanation
Indices: 12801180--12801681 Score: 478
Period size: 158 Copynumber: 3.2 Consensus size: 157
12801170 CCCAGTCTAA
*
12801180 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAA-GGTTGTGATAGCAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGATC-AAGGGTTGTGGTAGCAGGATCGG
* * * * *
12801243 TAGCACACAGA-GGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGC
64 TAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGT
* * **
12801307 GCCCGCACACCTATTTAATGGGTTGGCTTAG
129 GCCCGCGC-TC-ATTTCGTGGGTTGGCTTAG
* * * * * * * * * *
12801338 CCATAGGGAGTTCTTTCTATGTCTAA-ACCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCATGTCTAAGA--TCAGACCGGATCAAGGGTTGTGGTAGCAGGATCGG
* * * * * *
12801401 TAGCATGCAGAGGGGGACTGGGTCGATCCTCGGCTTACGCATTATGCCTCTTCGATCGGCTCAGT
64 TAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGT
*
12801466 GCCTACGCGCTCATTTCGTGGGTTGACTTAG
129 GCC--CGCGCTCATTTCGTGGGTTGGCTTAG
* * * * **
12801497 GCATACGGAGTTTATTCCCA-GTCTAAGATCAGATCGGATCAAGGGTTGCGGTAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGATCAAGGGTTGTGGTAGCAGGATCGGT
* * * * * * *
12801561 AGCACGCAG-GTGGGACCGGATCGATCCCCAGCTTGCGCATTCTACCTCTCCAACCGGCTGAGTG
65 AGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGTG
*
12801625 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCCG--CGCTCATTTCGTGGGTTGGCTTAG
*
12801655 GCATAGGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
12801682 CATACGGAGT
Statistics
Matches: 271, Mismatches: 60, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
156 2 0.01
157 7 0.03
158 141 0.52
159 113 0.42
160 4 0.01
161 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGATCAAGGGTTGTGGTAGCAGGATCGGTA
GCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGTGC
CCGCGCTCATTTCGTGGGTTGGCTTAG
Found at i:12802235 original size:355 final size:344
Alignment explanation
Indices: 12801742--12802391 Score: 808
Period size: 343 Copynumber: 1.9 Consensus size: 344
12801732 AGCCGGACCA
* * * *
12801742 GTAGCAGGATCGGTAGCATGAAGGGGGGGAACGAGCCGATCCCCGACGTGCGTATTCTACCTCTC
1 GTAGCAGGATCGGCAACATGAAGGGGGGGAACGAGCCGATCCCCGACCTACGTATTCTACCTCTC
**
12801807 CAATCGACTGAGCGCTTGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
66 CAATCGACTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * *
12801872 TCTAAGCCCTAG-TCGGACCGATGGTTGTGGTAGTAGGACCGACAGCGAAATTGGCAGCATGCAG
131 TCTAAGCCCCAGCT-GGACCGA-GG--GT--T-GT--G---G-CAGCGAAATCGACAGCATGCAG
* * * * * *
12801936 AGAGGGACCGGGTTGATCCCCGGCTTACGCGTTATGCCTCTTCGACT-GGCTGAGTG-CTCGCAC
183 AGAGGGACCGGGTCGATCCCCGACTTACACATTATGCCTCTTCG-CTCGACTCAGTGCCT-GCAC
*
12801999 ACTCGTTTCGTGCGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATT
246 ACTCGTTCCGTGCGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATT
12802064 CCTAGTGTAAGACCGGATCAGACTGAGGGTTACG
311 CCTAGTGTAAGACCGGATCAGACTGAGGGTTACG
* * * *
12802098 GTAGCAGGATCGGCAACATGCA-GGGGGGATA-GGGCCGATCCCTGACCTACGTATTCTGCCTCT
1 GTAGCAGGATCGGCAACATGAAGGGGGGGA-ACGAGCCGATCCCCGACCTACGTATTCTACCTCT
* ** * *
12802161 CCGATCGGTTGAGCGCCCGCAC-GTCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
65 CCAATCGACTGAGCGCCCGCACACT-CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
** *
12802225 TGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGATCGACAGCATGCAGAGGGGGACCGG
129 TGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGAAATCGACAGCATGCAGAGAGGGACCGG
* * * *
12802290 GTCGATCCCCGACTTGCACATTATGCCTCTTCGGTCGACTCAGTGCCTGCACGCTCGTTCCGTGG
194 GTCGATCCCCGACTTACACATTATGCCTCTTCGCTCGACTCAGTGCCTGCACACTCGTTCCGTGC
*
12802355 GTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
259 GTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAG
12802392 ATCAGATCAG
Statistics
Matches: 256, Mismatches: 33, Indels: 23
0.82 0.11 0.07
Matches are distributed among these distances:
342 1 0.00
343 113 0.44
344 3 0.01
347 1 0.00
349 2 0.01
350 1 0.00
352 2 0.01
354 3 0.01
355 109 0.43
356 21 0.08
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (344 bp):
GTAGCAGGATCGGCAACATGAAGGGGGGGAACGAGCCGATCCCCGACCTACGTATTCTACCTCTC
CAATCGACTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
TCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGAAATCGACAGCATGCAGAGAGGGACCGGGT
CGATCCCCGACTTACACATTATGCCTCTTCGCTCGACTCAGTGCCTGCACACTCGTTCCGTGCGT
TGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCTAGTGTAAGACCG
GATCAGACTGAGGGTTACG
Found at i:12802364 original size:159 final size:160
Alignment explanation
Indices: 12802048--12802551 Score: 429
Period size: 159 Copynumber: 3.2 Consensus size: 160
12802038 CCCAATCTAA
* * * * * * *
12802048 GCATACGGAGTTCATTCC-TAGTGTAAG-ACCGGATCAGACTGAGGGTTACGGTAGCAGGATCGG
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGATCAGACCGAGGGTTGCAGCAGCAGGATCGA
* ** * * * ** * * * ** *
12802111 CAACATGCAG-GGGGGATAGGGCCGATCCCTGACCTACGTATTCTGCCTCTC-CGATCGGTTGAG
65 CAGCATGCAGAGGGGGACCGGGCCGATCCCCGACTTGCACATTATGCCTCTCTGGCT-GACTCAG
*
12802174 CGCCCGCACG-TCCGTTTCATGGGTTGGCTTAG
129 CGCCCGCACGCT-CGTTTCCTGGGTTGGCTTAG
* * * * ** *
12802206 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-GGACCGAGGGTTGTGGCAGCGGGATCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAGACCGAGGGTTGCAGCAGCAGGATCGAC
*
12802270 AGCATGCAGAGGGGGACCGGGTCGATCCCCGACTTGCACATTATGCCTCT-TCGG-TCGACTCAG
66 AGCATGCAGAGGGGGACCGGGCCGATCCCCGACTTGCACATTATGCCTCTCT-GGCT-GACTCAG
* * *
12802333 TGCCTGCACGCTCG-TTCCGTGGGTTGACTTAG
129 CGCCCGCACGCTCGTTTCC-TGGGTTGGCTTAG
* * * * *
12802365 GCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGATCAGATCGCGGGTTGCAGCAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCAGACCGAGGGTTGCAGCAGCAGGATCGA
* * * * * * * * *
12802428 CAGCATGCCGGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCTGGCTGAGC
65 CAGCATGCAGAGGGGGACCGGGCCGATCCCCGACTTGCACATTATGCCTCTCTGGCTGACTCAGC
*
12802493 GCCCGCATGCTCGTTTCCT-GGTTGGCTTAG
130 GCCCGCACGCTCGTTTCCTGGGTTGGCTTAG
12802523 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
12802552 TACGGAGTTC
Statistics
Matches: 275, Mismatches: 57, Indels: 27
0.77 0.16 0.08
Matches are distributed among these distances:
157 3 0.01
158 92 0.33
159 169 0.61
160 11 0.04
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAGACCGAGGGTTGCAGCAGCAGGATCGAC
AGCATGCAGAGGGGGACCGGGCCGATCCCCGACTTGCACATTATGCCTCTCTGGCTGACTCAGCG
CCCGCACGCTCGTTTCCTGGGTTGGCTTAG
Found at i:12802392 original size:868 final size:867
Alignment explanation
Indices: 12800049--12802746 Score: 3134
Period size: 868 Copynumber: 3.1 Consensus size: 867
12800039 CACGCAGGGG
* * ** * *
12800049 GCCCGTACGCTCGTTTTGTGGGTTGGCTTAGGCATACGAATTTCATTCCATGTCTAAGCCCCAG-
1 GCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCAGT
*
12800113 CGGATCGATGGTTGTGGTAGCAGGACC-AGCAGCTGGATTGGTAGCACGCAGAGGGGGACCAGGC
65 CGGATCGATGGTTGTGGTAGCAGGACCGA-CAGC-GGATTGGTAGCACGCAGAGGGGGACCGGGC
* ** * *
12800177 TGATCCCTGGCTTACGCATTATGCCTCTCCGATCGACCTCTCTGACCAACTGAGCACCCACACCC
128 TGATCCCCGGCTTACGCATTATGCCTCT-C--TCGA-CTGGCTG----AC-GAGCTCGCACA--C
* *
12800242 TCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATACAGAGTTCATTCC
182 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCC
* * * ** * *
12800306 CAGTCTAAGATTAGACCAGATCGAGGGTTACGGCAGCAAGATCAACAGCACGCAGGGGGGATCGA
247 CAGTCTAAGATCAGACCAGATCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGGGGGGATAGG
* * * * * * *
12800371 GCCAATCCCCGGTCGATCCCCGGCTTGTGCATTCTACCTCTCCGATCGACTGAGTGCCCGTACGC
312 GCCGAT-CCC--T-GA---CCTGC--GT--ATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGA
* * * *
12800436 CCGTTTCGTGTGTTGGCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGG
366 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG
** * * * * ** * * *
12800501 GTTACGGTAGCAGGACCGGCAGTACGCAGAGGGGGACCGGCCCGATCCCTGGCCTGCGTATTATG
431 GTTGTGGCAGCGGGACCGGCAGCATGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATG
* * * ** * * * *
12800566 TCTCTCCGG-CCAGCTCAGCACCCGCATGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
496 CCTCTTCGGTCGA-CTCAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
12800630 TTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGGGGGA
560 TTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGGGGGA
* * * *
12800695 CTGGGCCGAT-CCTTGACTTGCGCATTCTACCTCTCCGGTCGGCTGAGTGCTCGCACGCTCGTTT
625 CCGGGCCGATCCCTAG-CTTGCGCATTCTACCTCTCCGGCCGGCTGAGTGCCCGCACGCTCGTTT
*
12800759 CGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGAATACGGAGTTCATTCCTAGTCT
689 CGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCT
* * * *
12800824 AAGATCGGACCGGATCGAGGGTTGCGAAAGCAGGACCAGTAGCAGGATCGACAGCACGCAGGGGG
754 AAGATCGGACCGGATCAAGGGTTGCG-TAGCAGGACCAGTAGCAGGATCGGCAGCACGAAGGGGG
* * * * * *
12800889 GACCGAGTTGATCCTCGGCTTGCGCATTCTGTCTCTCCATTCGGTTGAGC
818 GAACGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCAATCGGCTGAGC
* *
12800939 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGTCCCAAT
1 GCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCAGT
* * * * * * * *
12801004 CGGATCAAGGGTTATGGCAGCAGGACCGGCAGTGGGATCGGTAGCACGCAGAGGGGGACTGGGCT
65 CGGATCGATGGTTGTGGTAGCAGGACCGACAG-CGGATTGGTAGCACGCAGAGGGGGACCGGGCT
* * *
12801069 GATCCCCGGCTTGCGCATTATGCCTCTCTGGCCGGCCTCTCCGGCTGACTGAGCATCCGCACGCT
129 GATCCCCGGCTTACGCATTATGCCTCTCT---C-G--ACT--GGCTGAC-GAGC-T-CGCACACT
* * *
12801134 CATTTCGTGGGTTAACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
183 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
* * ** * * * * *
12801199 AGTCTAAGATCAGACCGGATCGAAGGTTGTGATAGCAGGATCGGTAGCACACAGAGGGGACCA-G
248 AGTCTAAGATCAGACCAGATCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGGGGGGA-TAGG
* * * * * * * *
12801263 GCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCAC-ACCTATTTAATG
312 GCCGATCCCTGACCTGCGTATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGACC-GTTTCATG
* * * *
12801327 GGTTGGCTTAGCCATAGGGAGTTCTTTCTATGTCTAAACCCCAGCCGGACCGAGGGTTGTGGCAG
376 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAG
* * * * *
12801392 CGGGACCGGTAGCATGCAGAGGGGGACTGGGTCGATCCTCGGCTTACGCATTATGCCTCTTCGAT
441 CGGGACCGGCAGCATGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGT
* * * * *
12801457 CGGCTCAGTGCCTACGCGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTA
506 CGACTCAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * **
12801522 AGATCAGATCGGATCAAGGGTTGCGGTAGTAGGATCGACAGCACGCAGGTGGGACCGGATCGATC
571 AGATCAGATCAGATCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGCCGATC
* **
12801587 CCCAGCTTGCGCATTCTACCTCTCCAACCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCT
636 CCTAGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCT
* * *
12801652 TAGGCATAGGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA-TCTAAGATCAGACCG
701 TAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCG
* * * *
12801716 GATCAAGGGTTGCAGTAGCCGGACCAGTAGCAGGATCGGTAGCATGAAGGGGGGGAACGAGCCGA
766 GATCAAGGGTTGC-GTAGCAGGACCAGTAGCAGGATCGGCAGCACGAA-GGGGGGAACGAGCTGA
* * * * *
12801781 TCCCCGACGTGCGTATTCTACCTCTCCAATCGACTGAGC
829 TCCCCGGCTTGCGCATTCTGCCTCTCCAATCGGCTGAGC
**
12801820 GCTTGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGT
1 GCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGT
* * * * * * *
12801885 CGGACCGATGGTTGTGGTAGTAGGACCGACAGCGAAATTGGCAGCATGCAGAGAGGGACCGGGTT
65 CGGATCGATGGTTGTGGTAGCAGGACCGACAGCG-GATTGGTAGCACGCAGAGGGGGACCGGGCT
* * *
12801950 GATCCCCGGCTTACGCGTTATGCCTCT-TCGACTGGCTGA-GTGCTCGCACACTCGTTTCGTGCG
129 GATCCCCGGCTTACGCATTATGCCTCTCTCGACTGGCTGACGAGCTCGCACACTCGTTTCGTGGG
* * * *
12802013 TTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCTAGTGTAAGACC
194 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
12802078 GGATCAGA-CTGAGGGTTACGGTAGCAGGATCGGCAACATGCAGGGGGGATAGGGCCGATCCCTG
259 AGACCAGATC-GAGGGTTACGGTAGCAGGATCGGCAGCACGCAGGGGGGATAGGGCCGATCCCTG
* * *
12802142 ACCTACGTATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACGTCCGTTTCATGGGTTGGCTTAGG
323 ACCTGCGTATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGACCGTTTCATGGGTTGGCTTAGG
* * *
12802207 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGATCGACAG
388 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCAG
* *
12802272 CATGCAGAGGGGGACCGGGTCGATCCCCGACTTGCACATTATGCCTCTTCGGTCGACTCAGTGCC
453 CATGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGACTCAGTGCC
* *
12802337 TGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCAG
518 TGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAG
* * * * * *
12802402 ATCGCGGGTTGCAGCAGTAGGATCGACAGCATGCCGGGGGGGATCGGGCCGATCCCTGGCTTGCG
583 ATCGAGGGTTGCGGCAGTAGGATCGACAGCACG-CAGGGGGGACCGGGCCGATCCCTAGCTTGCG
* * * * * *
12802467 CATTCTGCCTCTCTGGCTGGCTGAGCGCCCGCATGCTCGTTTCCT-GGTTGGCTTAGGCATACGG
647 CATTCTACCTCTCCGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
*
12802531 AGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGATCAAGGGTT
712 AGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGATCAAGGGTT
* * * * * *
12802596 ACGGTAGCAGGACCAGTAGCAGGATTGGCAGCACGAAGGGGGGATCGGGCTGATCCCCGGTTTGT
777 GC-GTAGCAGGACCAGTAGCAGGATCGGCAGCACGAAGGGGGGAACGAGCTGATCCCCGGCTTGC
* * *
12802661 GCATTCTGCCTCTCCGACCGGCTGAGG
841 GCATTCTGCCTCTCCAATCGGCTGAGC
* * *
12802688 GCCCGTACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTACATGTCTAAGC
1 GCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12802747 ATACGGAGTT
Statistics
Matches: 1519, Mismatches: 262, Indels: 76
0.82 0.14 0.04
Matches are distributed among these distances:
867 2 0.00
868 525 0.35
869 119 0.08
870 3 0.00
872 6 0.00
874 2 0.00
876 1 0.00
877 1 0.00
880 60 0.04
881 519 0.34
882 4 0.00
883 1 0.00
885 3 0.00
888 2 0.00
890 58 0.04
891 123 0.08
892 81 0.05
893 6 0.00
895 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (867 bp):
GCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGTC
GGATCGATGGTTGTGGTAGCAGGACCGACAGCGGATTGGTAGCACGCAGAGGGGGACCGGGCTGA
TCCCCGGCTTACGCATTATGCCTCTCTCGACTGGCTGACGAGCTCGCACACTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ACCAGATCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGGGGGGATAGGGCCGATCCCTGACC
TGCGTATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGACCGTTTCATGGGTTGGCTTAGGCAT
AGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCAT
GCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCGACTCAGTGCCTGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATC
GAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCTAGCTTGCGCATT
CTACCTCTCCGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGATCAAGGGTTGCGT
AGCAGGACCAGTAGCAGGATCGGCAGCACGAAGGGGGGAACGAGCTGATCCCCGGCTTGCGCATT
CTGCCTCTCCAATCGGCTGAGC
Found at i:12802559 original size:26 final size:26
Alignment explanation
Indices: 12802523--12802575 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
12802513 GTTGGCTTAG
12802523 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
12802549 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
12802575 G
1 G
12802576 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:12804091 original size:158 final size:156
Alignment explanation
Indices: 12803617--12804118 Score: 483
Period size: 158 Copynumber: 3.2 Consensus size: 156
12803607 CCCAATCTAA
* * * *
12803617 GCATACGGAGTTCATTCC-TAGTGTAAGACCGGATC-AGACTGAGGGTTACGGTAGTAGGATCGG
1 GCATACGGAGTTCATTCCAT-GTCTAAGACCGGACCGA-ACCGAGGGTTACGGTAGTAGGATCGA
* * * * * * * *
12803680 CAACACGTAGGGGGGACAGGGCCGATCCCCGACCTGCGCATTCTACCTCTCCGA-TCGGTTGAAT
64 CAGCATGTAGGGGGGAC-CGGTCGATCCCCG-CTTGCGCATTCTGCCTCTCCGACT-GGCTGAGT
* *
12803744 GCCAGCACTCCCGTTTCATGGGTTGGCTTAG
126 GCCAGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * * ** * *
12803775 GCATAGGGAGTTCATTCCATGTATAAG-CCCCAGCTGGACCGAGGGTTGTGGCAGTGGGATCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGACCGGA-CCGAACCGAGGGTTACGGTAGTAGGATCGAC
* * * * * * * *
12803839 AGCATGCAGAGGGGGACCGAGTCAATCCCCGGCTTGCGCATTATGCCTCTTCGACCGACTCAGCG
65 AGCATGTAG-GGGGGACCG-GTCGATCCCC-GCTTGCGCATTCTGCCTCTCCGACTGGCTGAGTG
* *
12803904 CCTGCACGCTCGTTTCATGGGTTGACTTAG
127 CCAGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
12803934 GCATACGGAGTTCATTCTCA-GTCTAAGATCGGACCGAACCGATGGTTACGGTAGTAGGATCGAT
1 GCATACGGAGTTCATTC-CATGTCTAAGACCGGACCGAACCGAGGGTTACGGTAGTAGGATCGAC
* **
12803998 AGCATGTAGGGGGGACCTGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCGACTGGGAGAGTGC
65 AGCATGTAGGGGGGACC-GGTCGATCCCC-GCTTGCGCATTCTGCCTCTCCGACTGGCTGAGTGC
* *
12804063 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CAGCACGCTCGTTTCATGGGTTGGCTTAG
12804092 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
12804119 CCCCAGTCGG
Statistics
Matches: 272, Mismatches: 61, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
157 5 0.02
158 144 0.53
159 118 0.43
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCGGACCGAACCGAGGGTTACGGTAGTAGGATCGACA
GCATGTAGGGGGGACCGGTCGATCCCCGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGTGCCAG
CACGCTCGTTTCATGGGTTGGCTTAG
Found at i:12804302 original size:25 final size:26
Alignment explanation
Indices: 12804263--12804314 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
12804253 TTTGATTTAG
*
12804263 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
**
12804289 GCATAAGGA-TTCATTTCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
12804314 G
1 G
12804315 ATCAGATTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:12804555 original size:671 final size:672
Alignment explanation
Indices: 12803385--12804790 Score: 1970
Period size: 671 Copynumber: 2.1 Consensus size: 672
12803375 CAGGCCGACT
* * * *
12803385 GAGTGCTCGCATGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
1 GAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
* * * ** * ** **
12803450 TAGTCGGACCGATGGTTGTGGTAGTAGGACCGACAGCGAAATTGGCAGCATGCAGAGAGGGACCG
66 CAGTCGGACCGAGGGTTGTGGTAGCAGGACCGACAGCGAAACCGACAGCACACAGAGAGGGACAA
* * * * * *
12803515 GGTTGATCCCCGGCTTACGCGTTATGCCTCTTCGACTGGCTGAGTGCTCGCACACTCGTTTCGTG
131 GGCTGATCCCCGACTTACACATTATGCCTCTTCGACTGGCTGAGCGCTCGCACACTCATTTCGTG
* *
12803580 CGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCTAGTGTAAGA
196 CGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATAAGGAGTTCATTCCTAGTCTAAGA
* * * **
12803645 CCGGATCAGACTGAGGGTTACGGTAGTAGGATCGGCAACACGTAGGGGGGACAGGGCCGATCCCC
261 CCAGATCAGACTGAGGGTTACGGCAGTAGGATCGGCAACACGCAAAGGGGACAGGGCCGATCCCC
* * *** * *
12803710 GACCTGCGCATTCTACCTCTCCGATCGGTTGAATGCCAGCACTCCCGTTTCATGGGTTGGCTTAG
326 GACCTGCACATTCTACCTCTCCGACCAACTGAACGCCAGCACACCCGTTTCATGGGTTGGCTTAG
** * *
12803775 GCATAGGGAGTTCATTCCATGTATAAGCCCCAGCTGGACCGAGGGTTGTGGCAGTGGGATCGACA
391 GCATAGGGAGTTCATTCCATGTATAAGCCCCAGCCAGACCGAGGGTTGTGGCAATGGAATCGACA
* *
12803840 GCATGCAGAGGGGGACCGAGTCAATCCCCGGCTTGCGCATTATGCCTCTTC-GACCGACTCAGCG
456 GCACGCAGAGGGGGACCGAGTCAATCCCCGGCTTGCGCATTATGCCTCTCCAGACCG-CTCAGCG
12803904 CCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCGGACC
520 CCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCGGACC
12803969 GAACCGATGGTTACGGTAGTAGGATCGATAGCATGTAGGGGGGACCTGGTCGATCCCCAGCTTGT
585 GAACCGATGGTTACGGTAGTAGGATCGATAGCATGTAGGGGGGACCTGGTCGATCCCCAGCTTGT
12804034 GCATTCTGCCTCTCCGACTGGGA
650 GCATTCTGCCTCTCCGACTGGGA
12804057 GAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
1 GAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
* * * *
12804122 CAGTCGGACCGAGGGTTGTGGCT-GCAGGACCGGCAGC-AGGACCGACAGCACACAGAGGGGGAT
66 CAGTCGGACCGAGGGTTGTGG-TAGCAGGACCGACAGCGA-AACCGACAGCACACAGAGAGGGAC
* * * *
12804185 AAGGCTGATCCCTGACTTATACATTATGCCTC-TCTGA-TCGGCTGAGCGCTTGGACACTCATTT
129 AAGGCTGATCCCCGACTTACACATTATGCCTCTTC-GACT-GGCTGAGCGCTCGCACACTCATTT
* * *
12804248 TGTG-GTTTGATTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAGGA-TTCATTTCC-AGT
192 CGTGCG-TTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATAAGGAGTTCA-TTCCTAGT
* ** ** *
12804310 CTAAGATCAGATTGGA-TCGAGGGTTTTGGCAGTAGGATCGGTAACACGCAAAGGGGATCA-GGC
255 CTAAGACCAGATCAGACT-GAGGGTTACGGCAGTAGGATCGGCAACACGCAAAGGGGA-CAGGGC
* * * * * *
12804373 CGATCCTCGACTTTCACATTCTGCCTCTCCTG-CCAACTGAGCGCCCGCACACCCGTTTCATGGG
318 CGATCCCCGACCTGCACATTCTACCTCTCC-GACCAACTGAACGCCAGCACACCCGTTTCATGGG
* * * *
12804437 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGATCGAGGGTTGTTGCAATG
382 TTGGCTTAGGCATAGGGAGTTCATTCCATGTATAAGCCCCAGCCAGACCGAGGGTTGTGGCAATG
* ** * * *
12804502 GAATTGGTAGCACGCAGAGGGGGACCGAGTCGATCCCCGGCTTGCGCATTATGCCTCTCCAGTCT
447 GAATCGACAGCACGCAGAGGGGGACCGAGTCAATCCCCGGCTTGCGCATTATGCCTCTCCAGACC
12804567 GCTCAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAG
512 GCTCAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAG
*
12804632 ATCGGACCGAACCGATGGTTGCGGTAGTAGGATCGATAGCATGTAGGGGGGACCTGGTCGATCCC
577 ATCGGACCGAACCGATGGTTACGGTAGTAGGATCGATAGCATGTAGGGGGGACCTGGTCGATCCC
12804697 CAGCTTGTGCATTCTGCCTCTCCGACTGGGA
642 CAGCTTGTGCATTCTGCCTCTCCGACTGGGA
*
12804728 GAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 GAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12804791 ATACAGAGTT
Statistics
Matches: 649, Mismatches: 75, Indels: 21
0.87 0.10 0.03
Matches are distributed among these distances:
670 1 0.00
671 439 0.68
672 208 0.32
673 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (672 bp):
GAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
CAGTCGGACCGAGGGTTGTGGTAGCAGGACCGACAGCGAAACCGACAGCACACAGAGAGGGACAA
GGCTGATCCCCGACTTACACATTATGCCTCTTCGACTGGCTGAGCGCTCGCACACTCATTTCGTG
CGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATAAGGAGTTCATTCCTAGTCTAAGA
CCAGATCAGACTGAGGGTTACGGCAGTAGGATCGGCAACACGCAAAGGGGACAGGGCCGATCCCC
GACCTGCACATTCTACCTCTCCGACCAACTGAACGCCAGCACACCCGTTTCATGGGTTGGCTTAG
GCATAGGGAGTTCATTCCATGTATAAGCCCCAGCCAGACCGAGGGTTGTGGCAATGGAATCGACA
GCACGCAGAGGGGGACCGAGTCAATCCCCGGCTTGCGCATTATGCCTCTCCAGACCGCTCAGCGC
CTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCGGACCG
AACCGATGGTTACGGTAGTAGGATCGATAGCATGTAGGGGGGACCTGGTCGATCCCCAGCTTGTG
CATTCTGCCTCTCCGACTGGGA
Found at i:12804593 original size:159 final size:158
Alignment explanation
Indices: 12804412--12804790 Score: 401
Period size: 158 Copynumber: 2.4 Consensus size: 158
12804402 CTGCCAACTG
* * *
12804412 AGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCT
1 AGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-
* ** * *
12804477 AG-CC-AGATCGAGGGTTGTTGCAAT-GGAATTGGTAGCACGCAGAGGGGGACC-GAGTCGATCC
65 AGACCGA-ACCGAGGGTTGCGGCAATAGG-ATCGATAGCACGCAG-GGGGGACCTG-GTCGATCC
* * *
12804538 CCGGCTTGCGCATTATGCCTCTCCAGTCT-GCTC
126 CCAGCTTGCGCATTATGCCTCTCC-GACTGGCAC
* * **
12804571 AGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCTCA-GTCTAAGATC
1 AGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCCC
* * * * * *
12804635 GGACCGAACCGATGGTTGCGGTAGTAGGATCGATAGCATGTAGGGGGGACCTGGTCGATCCCCAG
65 AGACCGAACCGAGGGTTGCGGCAATAGGATCGATAGCACGCAGGGGGGACCTGGTCGATCCCCAG
* * * *
12804700 CTTGTGCATTCTGCCTCTCCGACTGGGAG
130 CTTGCGCATTATGCCTCTCCGACTGGCAC
* * *
12804729 AGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 AGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12804791 ATACAGAGTT
Statistics
Matches: 182, Mismatches: 31, Indels: 15
0.80 0.14 0.07
Matches are distributed among these distances:
157 5 0.03
158 92 0.51
159 80 0.44
160 5 0.03
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
AGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCA
GACCGAACCGAGGGTTGCGGCAATAGGATCGATAGCACGCAGGGGGGACCTGGTCGATCCCCAGC
TTGCGCATTATGCCTCTCCGACTGGCAC
Found at i:12804993 original size:26 final size:26
Alignment explanation
Indices: 12804957--12805006 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
12804947 TGGGTTGACT
12804957 TAGGCATACGGAGTTCATTCCATGTC
1 TAGGCATACGGAGTTCATTCCATGTC
12804983 TAGGCATACGGAGTTCATTCCATG
1 TAGGCATACGGAGTTCATTCCATG
12805007 ACTTAGCTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCATGTC
Found at i:12805373 original size:26 final size:26
Alignment explanation
Indices: 12805344--12805396 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12805334 GTTGACTTAG
*
12805344 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
12805370 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12805396 G
1 G
12805397 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12805856 original size:158 final size:157
Alignment explanation
Indices: 12805370--12805871 Score: 472
Period size: 158 Copynumber: 3.2 Consensus size: 157
12805360 TCCAGTCTAA
* **
12805370 GCATACAGAGTTCATTCCCA-GTCTAAGATCGAACCAGACTGAGGGTTACGGTAGCAGGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCGAACCAGACCGAGGGTTGTGGTAGCAGGATCGAC
* * * * * * * *
12805434 AGCATGCAGGAGGGA-TCGGGCTGATCCCCGGCTTACGAATTCTACCTCTTCGATCGGCTGAGCG
65 AGCACGCAGGGGGGACCCGGTC-GATCCTCGGCTTACGCATTCTAGCTCTTCGA-CCGCTGAGCG
* * * * *
12805498 TCGACATGCCCGTTTCGTTGGTTGGCTTAG
128 CCCACACGCTCGTTTCGTGGGTTGGCTTAG
** * ** * * * * *** *
12805528 GCATAGGGAGTTTATTCCATGTCTAAGCCCCAGCCAGACCGAAGGTTGTGGCAATGGGACCGACA
1 GCATACAGAGTTCATTCCATGTCTAAGATCGAACCAGACCGAGGGTTGTGGTAGCAGGATCGACA
* * ** * * * * * *
12805593 GCACACAGAGGGGGACCGGGTCGATCCTCGGCTTGTGCATTAT-GCCTCTCCGTTCTGCTCAGCT
66 GCACGCAG-GGGGGACCCGGTCGATCCTCGGCTTACGCATTCTAG-CTCTTCG-ACCGCTGAGCG
* *
12805657 CCCACACGCTCGTTTTGTGGGTTGACTTAG
128 CCCACACGCTCGTTTCGTGGGTTGGCTTAG
*
12805687 GCATACAGAGTTCATTCCCA-GTCTAAGATCGAACCGGACCGAGGGTTGTGGTAGCAGGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCGAACCAGACCGAGGGTTGTGGTAGCAGGATCGAC
* * * *
12805751 AGCACGCAGGGGGGACCCGATCGGTCATCGGCTTACGCATTCTAGCTCTTTGACCGACTGAGCGC
65 AGCACGCAGGGGGGACCCGGTCGATCCTCGGCTTACGCATTCTAGCTCTTCGACCG-CTGAGCGC
12805816 CCACACGCTCGTTTCGTGGGTTGGCTTAG
129 CCACACGCTCGTTTCGTGGGTTGGCTTAG
* *
12805845 GAATACGGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
12805872 CATATGGAGT
Statistics
Matches: 263, Mismatches: 72, Indels: 18
0.75 0.20 0.05
Matches are distributed among these distances:
157 8 0.03
158 137 0.52
159 112 0.43
160 6 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCGAACCAGACCGAGGGTTGTGGTAGCAGGATCGACA
GCACGCAGGGGGGACCCGGTCGATCCTCGGCTTACGCATTCTAGCTCTTCGACCGCTGAGCGCCC
ACACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:12806429 original size:158 final size:159
Alignment explanation
Indices: 12806017--12806429 Score: 366
Period size: 158 Copynumber: 2.6 Consensus size: 159
12806007 GAACACCCTT
* * * * * * * *
12806017 ACGCCCATTTCGTGGGTTGGCTTAGGCATAGGCAGTTCACTCCATGCCTAAACCCTAGCCAGACT
1 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
* * * * ** * * **
12806082 GAGGGTTGTGGCAGCGGGATCGACAACACATAGAGAGGGATCGGGCTGATCCCCGGCTTGTGCAT
66 AAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGAGGGATCGGGCCGATCCCCGACTTGCACAT
* * * * *
12806147 TATGCCTCTTCGATCGGCTCAGCACTCGC
131 TATACCTCTCCGATCGACTCAGCACCCAC
* * * * * * * ** * * *
12806176 ACGCTCGTTGCGTGTGTTGACTTATGCATACGGAGTTCATTCCCA-ATCTAAG-ATCGGATCGTA
1 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGA
* * ** * *
12806239 CCAAGGGTTGCGACAGTAGGATCC-GTAGCACGCA-AGAGGGATCGGGCCGATGCCCGACTTGCA
64 CCAAGGGTTGTGGCAGCGGGA-CCGGCAGCACGCAGAGAGGGATCGGGCCGATCCCCGACTTGCA
* * *
12806302 CATTCTACCTCTCCGATCGACTGAGCGCCCAC
128 CATTATACCTCTCCGATCGACTCAGCACCCAC
*
12806334 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAGCCCCAGCCGGACC
1 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
12806399 AAGGGTTGTGGCAGCGGGACCGGCAGCACGC
66 AAGGGTTGTGGCAGCGGGACCGGCAGCACGC
12806430 CCGTTTCATG
Statistics
Matches: 186, Mismatches: 62, Indels: 13
0.71 0.24 0.05
Matches are distributed among these distances:
157 4 0.02
158 118 0.63
159 60 0.32
160 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (159 bp):
ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC
AAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGAGGGATCGGGCCGATCCCCGACTTGCACAT
TATACCTCTCCGATCGACTCAGCACCCAC
Found at i:12806481 original size:26 final size:26
Alignment explanation
Indices: 12806451--12806503 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
12806441 GTTGGCTTAG
12806451 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
** *
12806477 GCATATGGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12806503 G
1 G
12806504 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12807376 original size:26 final size:26
Alignment explanation
Indices: 12807327--12807379 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12807317 GTTAGCTTAG
*
12807327 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
12807353 GCATACGGAGTTCTTTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
12807379 G
1 G
12807380 ATCAAACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:12807495 original size:184 final size:184
Alignment explanation
Indices: 12807169--12807527 Score: 443
Period size: 184 Copynumber: 2.0 Consensus size: 184
12807159 GTTGACTTAG
* * * * * *
12807169 GCATACGACGTTCATTCCCAGTCTAAGATCAGATCGGACCGAAGGTTGTGGCAGTAGGATCGACA
1 GCATACGACGTTCATTCCCAGTCTAAGATCAGAACCGAACGAAGGTTGCGGCAGCAGGATCAACA
* * * ***
12807234 GCACGTAGGGGGGACCGAGTCGATCTCCGGCTTGCGCATTTTGCCTTTCCGACCGGTTGAGCACC
66 GCACGTAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAACTGAGCACC
* *
12807299 CGTAAACTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCTATGTCTAA
131 CGCAAACTCGTTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCTATGTCTAA
* * *
12807353 GCATACGGA-GTTCTTTCCCAGTCTAAGATCA-AACCGAACTAAGGGTTGCGGTAGCAGGATCAA
1 GCATAC-GACGTTCATTCCCAGTCTAAGATCAGAACCGAACGAA-GGTTGCGGCAGCAGGATCAA
* * * **
12807416 CAGCACGTAGGGGGGACCGAGTCGATCCCCTGCTTGCGCATTCTGCCTCTCCGGCTAACTGAGTG
64 CAGCACGTAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAACTGAGCA
* ** * *
12807481 CTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTC
129 CCCGCAAACTCGTTTCATGGGTTAGCTTAGGCATACAGAGTTCATTC
12807528 CAAGTCTGAG
Statistics
Matches: 146, Mismatches: 27, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
183 7 0.05
184 137 0.94
185 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (184 bp):
GCATACGACGTTCATTCCCAGTCTAAGATCAGAACCGAACGAAGGTTGCGGCAGCAGGATCAACA
GCACGTAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAACTGAGCACC
CGCAAACTCGTTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCTATGTCTAA
Found at i:12807712 original size:26 final size:26
Alignment explanation
Indices: 12807682--12807740 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
12807672 GTTGACTTAG
*
12807682 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
12807708 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12807734 -CAT-CAGA
1 GCATACAGA
12807741 CCGAACCGAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 24 0.77
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.24
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12807755 original size:355 final size:343
Alignment explanation
Indices: 12807046--12808417 Score: 950
Period size: 355 Copynumber: 3.9 Consensus size: 343
12807036 GCCCCAACCA
* * * * * * * * * *
12807046 AACCGAGGGTTACGATAGCGGGATCAGCAGCATGCAGAGGCGGACCGGGCCAAT-CCCTGACTTG
1 AACCGAGGGTTGCGACAGCAGGATCAACAGCACGCAG-GGGGGACCGAGCCGATCCCCAG-CTTA
* * *** * * * * *
12807110 CGCATTATGCCTCTCCGACCGGTTCAACGCCCACACGCTCGTTTCATGGGTTGACTTAGGCAT-A
64 CGCATTCTGCCTCTACGACCAACTGAGCGCCCCCACGCCCATTTCATGGGTTGACTTAGGCATAA
* * ** * * **
12807174 CGACGTTCATTCCCAGTCTAAG-ATCAGATCGGACCGAAGGTTGTGGCAGTAGG-ATCGACAGCA
129 GGA-GTTCATTCCAAGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGAATC-ACAGCA
* * * * * * * * * * * **
12807237 CGTAG-GGGGGACCGAGTCGATCTCCGGCTTGCGCATTTTGCCTTTCCGACCGGTTGAGCACCCG
191 CGCAGAGAGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGATCGGCTGAGTGCCCG
* * *
12807301 TA-AACTCGTTTCATGGGTT-AGCTTAGGCATACGGAGTTCATTCTATGTCTAAGCATACGGAGT
256 CACGA-TCGTTTCATGGGTTGA-CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGT
* *
12807364 TCTTTCCCAGTCTAAGATCAAACCG
319 TCATTCCCAGTCTAAGATCAGACCG
** ** * * * *
12807389 AACTAAGGGTTGCGGTAGCAGGATCAACAGCACGTAGGGGGGACCGAGTCGATCCCCTGCTTGCG
1 AACCGAGGGTTGCGACAGCAGGATCAACAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTACG
* * * * * * * * * *
12807454 CATTCTGCCTCTCCGGCTAACTGAGTGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACA-
66 CATTCTGCCTCTACGACCAACTGAGCGCCCCCACGCCCATTTCATGGGTTGACTTAGGCATA-AG
* *
12807518 GAGTTCATTCCAAGTCTGAGCCCCAGTCGGACCGAGGGTTGTGGCAGTAGGACCGGTAGCAGGAT
130 GAGTTCATTCCAAGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGC---A-G--CGG--G-A--AT
** * ** * *
12807583 CGACAGCACGCAGAGAGGGACCGGGTTGATCCCTGGTTTGCGCATTATGCCTCTCCGGTCGGCTG
184 C-ACAGCACGCAGAGAGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGATCGGCTG
* *
12807648 AGTGCCTGCACGATCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCAT
248 AGTGCCCGCACGATCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCAT
* *
12807712 ACAGAGTTCATTCCCAGTCTAACATCAGACCG
312 ACGGAGTTCATTCCCAGTCTAAGATCAGACCG
*** * * *
12807744 AACCGAGGGTTGCGACAGCAGGATTGGCAGCACGCAGGGGGGATCGGGCCGATCCTCAGCTTACG
1 AACCGAGGGTTGCGACAGCAGGATCAACAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTACG
** *
12807809 CATTCTGCCTCTACGACCGGCTGAGCGCCCCCATGCCCATTTCATGGGTTGACTTAGGCATAAGG
66 CATTCTGCCTCTACGACCAACTGAGCGCCCCCACGCCCATTTCATGGGTTGACTTAGGCATAAGG
* * *
12807874 AGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCGGGACTCACAGCACGCAG
131 AGTTCATTCCAAGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGAATCACAGCACGCAG
* * * * * *
12807939 AGGGGGATCGGGCCGATCCCCGACTTATGCATTCTGCCTCTCCGATCGGTTGAGTGCCCGCACGC
196 AGAGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGATCGGCTGAGTGCCCGCACGA
* ** * *
12808004 TCATTTTGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCC
261 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCC
**
12808069 CAGTCTAAGATTGGACCG
326 CAGTCTAAGATCAGACCG
* *
12808087 GACCGAGGGTTGCGACAGCAGGACCAGCAGTAGGATCAACAGCAGGATCGATAGCATACAGGGGG
1 AACCGAGGGTT------GC--GA-CAGC---AGGATCAACAGC---A-C----GC--A-GGGGGG
* * ** * * ** * ** *
12808152 ATCGGGCCGATCCCTGGCTTACGTATTCTGCCTCT-CCAGCCGGCTGAGCACCGGCACGCTCATT
43 ACCGAGCCGATCCCCAGCTTACGCATTCTGCCTCTACGA-CCAACTGAGCGCCCCCACGCCCATT
* * * * *
12808216 TCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCGCCAGCCGGACCGAGGGTTGT
107 TCATGGGTTGACTTAGGCATAAGGAGTTCATTCCAAGTCTAAGCCCCAGCCGGACCGAGGGTTGT
* * ** * * * * * * *
12808281 GGCATC-GAAACTGGCAGCATGCAGAGGGGGATCGGGTCGATCCCCGTCTTGCGCATTATTCCTC
172 GGCAGCGGGAA-TCACAGCACGCAGAGAGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTC
* ** * ** ** * * *
12808345 TTCGGCCGACTCTGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCC
236 TCCGATCGGCTGAGTGCCCGCACGATCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CC
12808410 A-GTCTAAG
300 ATGTCTAAG
12808418 ATCGGATCGA
Statistics
Matches: 825, Mismatches: 156, Indels: 73
0.78 0.15 0.07
Matches are distributed among these distances:
342 103 0.12
343 180 0.22
344 3 0.00
345 1 0.00
346 2 0.00
347 1 0.00
348 1 0.00
349 5 0.01
350 1 0.00
351 3 0.00
352 5 0.01
354 15 0.02
355 268 0.32
356 4 0.00
358 1 0.00
359 1 0.00
363 2 0.00
365 5 0.01
366 221 0.27
367 3 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (343 bp):
AACCGAGGGTTGCGACAGCAGGATCAACAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTTACG
CATTCTGCCTCTACGACCAACTGAGCGCCCCCACGCCCATTTCATGGGTTGACTTAGGCATAAGG
AGTTCATTCCAAGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGAATCACAGCACGCAG
AGAGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGATCGGCTGAGTGCCCGCACGA
TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCC
CAGTCTAAGATCAGACCG
Found at i:12808061 original size:26 final size:26
Alignment explanation
Indices: 12808025--12808077 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12808015 GTTGGCTTAG
12808025 GCATAAGGAGTTCATT-CCATGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
*
12808051 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
12808077 G
1 G
12808078 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:12808435 original size:159 final size:158
Alignment explanation
Indices: 12808147--12808576 Score: 427
Period size: 159 Copynumber: 2.7 Consensus size: 158
12808137 ATAGCATACA
* * * * * * * * *
12808147 GGGGGATCGGGCCGATCCCTGGCTTACGTATTCTGCCTCTCCAGCCGGCTGAGCACCGGCACGCT
1 GGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCAGCCGACTCAGCACCCGCACGCT
* *
12808212 CATTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCGCCAGCCGGACCGAGGG
66 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCGCCAGCCGAACCGAGGG
* * * *
12808277 TTGTGGCA-TCGAAACTGGCAGCATGCAG
131 TTGCGGCAGTAGAAAC-GACAGCACGCAG
* * * * *
12808305 AGGGGGATCGGGTCGATCCCCGTCTTGCGCATTATTCCTCTTCGGCCGACTCTGCACCCGCACGC
1 -GGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCAGCCGACTCAGCACCCGCACGC
* * * * *
12808370 TCATTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCCA-GTCTAAGATCG-GA-TCGAACTG
65 TCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG--CGCCAGCCGAACCG
* * *
12808432 AGGGTTGCGGCAGTAGGATCGATAGCACGCAG
127 AGGGTTGCGGCAGTAGAAACGACAGCACGCAG
* * * * * * ** *
12808464 GGGGGATCGGGTTGATCCTCGACTTGCGCATTCTGCCTCTCCAGCTGGCTGAGTGCTCGCACGCT
1 GGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCAGCCGACTCAGCACCCGCACGCT
* **
12808529 CCTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12808577 ATATGTAGTT
Statistics
Matches: 220, Mismatches: 46, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
156 1 0.00
157 3 0.01
158 89 0.40
159 117 0.53
160 8 0.04
161 2 0.01
ACGTcount: A:0.17, C:0.27, G:0.30, T:0.25
Consensus pattern (158 bp):
GGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCAGCCGACTCAGCACCCGCACGCT
CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCGCCAGCCGAACCGAGGG
TTGCGGCAGTAGAAACGACAGCACGCAG
Found at i:12810180 original size:26 final size:26
Alignment explanation
Indices: 12810151--12810203 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12810141 GTTGACTTAG
12810151 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
12810177 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
12810203 G
1 G
12810204 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:12810539 original size:159 final size:157
Alignment explanation
Indices: 12810177--12810677 Score: 500
Period size: 158 Copynumber: 3.2 Consensus size: 157
12810167 CCCAGTCTAA
* * *
12810177 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGA-CTGGACCGAGGGTTGTGGCAGTAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATC-AGACCGAGGGTTGTGGTAGTAGGATCGG
* * * * * *
12810240 TAGCGCACAG-GGGGGATCGGACCGATCCCCAGCTTACGCATTCTTCCTCTCCTGCCGGTTGAGC
64 TAGCACGCAGAGGGGGATCGGGCCGAT-CCCGGCTTACGCATTCTGCCTCTCCAGCCGGTTGAGC
* *
12810304 -TCCCGTATGCCCGTTTCATGGGTTGCTTAG
128 GT-CCGTACGCTCGTTTCATGGGTTGCTTAG
* * ** * * * *
12810334 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCAGACCGAGGGTTATGGTAGTGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-TCAGACCGAGGGTTGTGGTAGTAGGATCGGT
* * * *
12810398 AGCACGCAGAAGGGGA-CTGGGCCGATCCTCGGCTTTCGCATTATGCCTCTCCAGCCAGCTT-AG
65 AGCACGCAGAGGGGGATC-GGGCCGATCC-CGGCTTACGCATTCTGCCTCTCCAGCC-GGTTGAG
* *
12810461 CGTCCGTACGCTCATTTCGTGGGTTGACTTAG
127 CGTCCGTACGCTCGTTTCATGGGTTG-CTTAG
* * * *
12810493 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCAGACCGAGGGTTGCGATAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATCAGACCGAGGGTTGTGGTAGTAGGATCGGT
* * * * *
12810557 AGCACGTA-AGGGGGATCGGGTCGATCACCGGCTTACCCATTCTGCCTCTTCGGCCGGTTGAGCG
65 AGCACGCAGAGGGGGATCGGGCCGATC-CCGGCTTACGCATTCTGCCTCTCCAGCCGGTTGAGCG
*
12810621 -CCTGCACGCTCGTTTCATGGGTTGGCTTAG
129 TCC-GTACGCTCGTTTCATGGGTT-GCTTAG
12810651 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
12810678 CATATGGAGT
Statistics
Matches: 279, Mismatches: 48, Indels: 33
0.77 0.13 0.09
Matches are distributed among these distances:
156 5 0.02
157 63 0.23
158 142 0.51
159 64 0.23
160 5 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGATCAGACCGAGGGTTGTGGTAGTAGGATCGGTA
GCACGCAGAGGGGGATCGGGCCGATCCCGGCTTACGCATTCTGCCTCTCCAGCCGGTTGAGCGTC
CGTACGCTCGTTTCATGGGTTGCTTAG
Found at i:12810681 original size:26 final size:26
Alignment explanation
Indices: 12810651--12810703 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12810641 GTTGGCTTAG
12810651 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12810677 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12810703 G
1 G
12810704 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12811071 original size:26 final size:26
Alignment explanation
Indices: 12811035--12811084 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
12811025 ACTTAGGCAG
12811035 ATGGAGTTCATCCCCAGTCTAAGAAT
1 ATGGAGTTCATCCCCAGTCTAAGAAT
*
12811061 ATGGAGTTCATTCCCAGTCTAAGA
1 ATGGAGTTCATCCCCAGTCTAAGA
12811085 TCAGACTAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (26 bp):
ATGGAGTTCATCCCCAGTCTAAGAAT
Found at i:12811549 original size:158 final size:156
Alignment explanation
Indices: 12811063--12811549 Score: 437
Period size: 158 Copynumber: 3.1 Consensus size: 156
12811053 CTAAGAATAT
* * * * **
12811063 GGAGTTCATTCCCAGTCTAAGATCAGACTAGAAC-GAGGGTTGCGACAGTAGGGTCGGTAGCACG
1 GGAGTTCATTCCCAGTCTAAGATCAGACCA-AACTGAGGGTTGCGGCAGCAGGATCGACAGCACG
* *
12811127 CAGGGGGGACCGAGCTGATCCCCGGCTTGCACATTCTGCCTCTCC-AGTCGGCTGAG-TGCCCGC
65 CAGGAGGGACCG-GCTGAT-CCCGACTTGCACATTCTGCCTCTCCGAGT-GGCTGAGCT-CCCGC
* * *
12811190 ACGCCCATTTTGTGGGTTGGCTTAGGCATAG
126 ACGCTCATTTCGTGGGTTGGCTTAGGCATAC
* ** * ** * *
12811221 GGAGTTCATT-CAATGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGGCAGCAGGA-CCAGCAGCA
1 GGAGTTCATTCCCA-GTCTAAG-ATCAGACCAAACTGAGGGTTGCGGCAGCAGGATCGA-CAGCA
* ** * * * * * ** * *
12811283 TGCAGAGAGGGATTGGGCCGATCCCCACCCTGCACATTATGCCTCTTCGACCGGCTCAGCACCCG
63 CGCAG-GAGGGA-CCGGCTGATCCCGA-CTTGCACATTCTGCCTCTCCGAGTGGCTGAGCTCCCG
* * * ** *
12811348 CACGCTCGTTTCATTGGTTAACTTATGCATAC
125 CACGCTCATTTCGTGGGTTGGCTTAGGCATAC
*
12811380 GGAGTTTATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGGCAGCAGGATCGACAGCACGC
1 GGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * * *
12811445 AGGAGGGACCAGGCTGATCCCTGACTTGCGCATTCTGACTCTCCGGGTGGCTGAGCTCCCGCACA
66 AGGAGGGACC-GGCTGATCCC-GACTTGCACATTCTGCCTCTCCGAGTGGCTGAGCTCCCGCACG
12811510 CTCATTTCGTGGGTTGGCTTAGGCATAC
129 CTCATTTCGTGGGTTGGCTTAGGCATAC
12811538 GGAGTTCATTCC
1 GGAGTTCATTCC
12811550 ATTTGTAAGC
Statistics
Matches: 246, Mismatches: 69, Indels: 28
0.72 0.20 0.08
Matches are distributed among these distances:
157 5 0.02
158 124 0.50
159 111 0.45
160 6 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (156 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGGCAGCAGGATCGACAGCACGC
AGGAGGGACCGGCTGATCCCGACTTGCACATTCTGCCTCTCCGAGTGGCTGAGCTCCCGCACGCT
CATTTCGTGGGTTGGCTTAGGCATAC
Found at i:12816691 original size:26 final size:26
Alignment explanation
Indices: 12816661--12816713 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12816651 GTTGACTTAG
* *
12816661 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTCCATCCCCAATCTAA
*
12816687 GCATACGGAGTCCATTCCCAATCTAA
1 GCATACGGAGTCCATCCCCAATCTAA
12816713 G
1 G
12816714 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTCCATCCCCAATCTAA
Found at i:12817864 original size:158 final size:157
Alignment explanation
Indices: 12817385--12817885 Score: 567
Period size: 158 Copynumber: 3.2 Consensus size: 157
12817375 CCTAGTTTAA
* * * * *
12817385 GCATATGGAGTTCATTCCCAGTCTAAGATCCGACCGGATCGAGGGTTGCGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCAACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * *
12817450 GCACGTAAGGGGGACCGAGCAGATCCTCGGCTTGCGCATTCTACCTCTCCGGTCGACTGAGCGCC
66 GCACGTAGGGGGGACCGAGCAGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
* * *
12817515 CGCACGCCCATTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCATGGGTT-GCTTAG
* ** * * * * *
12817543 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCAGGACTGAGGGTTGTGACAGCGGGATCGAC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCCAACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * ** * * *
12817607 AGCACGTAGAGGGGGATCGGGCTGATCCCCGG-TGTGTGCATTTTGCCTCTTTGGCTGGCTCAGT
65 AGCACGTAG-GGGGGACCGAGCAGATCCTCGGCT-TGCGCATTCTGCCTCTCCGGCCGGCTGAGC
*
12817671 GCCCGCACGCTCGTTTCATGGGTTGACTTAT
128 GCCCGCACGCTCGTTTCATGGGTTG-CTTAG
* *
12817702 GCATACGGAGTTCATTCCCAGTCCAAGATCCAACCGGACCGAGGGTTGTGGCAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCCAACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * *
12817767 GCACGTAGGGGGGACCAAGCCGATCCTCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCACC
66 GCACGTAGGGGGGACCGAGCAGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
12817832 CGCACGCTCGTTTCATGGGTTCGCTTAG
131 CGCACGCTCGTTTCATGGGTT-GCTTAG
12817860 GCATACGGAGTTCATT-CCACGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
12817886 ACATACAGAG
Statistics
Matches: 277, Mismatches: 58, Indels: 16
0.79 0.17 0.05
Matches are distributed among these distances:
157 6 0.02
158 144 0.52
159 124 0.45
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCCAACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGTAGGGGGGACCGAGCAGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGCTTAG
Found at i:12817891 original size:26 final size:26
Alignment explanation
Indices: 12817861--12817911 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12817851 TTCGCTTAGG
*
12817861 CATACGGAGTTCATT-CCACGTCTAAA
1 CATACAGAGTTCATTCCCA-GTCTAAA
12817887 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
12817912 GATTTTGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAA
Found at i:12819216 original size:26 final size:26
Alignment explanation
Indices: 12819180--12819232 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12819170 GTTGGCTTAG
12819180 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12819206 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12819232 G
1 G
12819233 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12819947 original size:26 final size:26
Alignment explanation
Indices: 12819911--12819963 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12819901 TTTGACTTAG
*
12819911 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12819937 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12819963 G
1 G
12819964 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12820271 original size:159 final size:157
Alignment explanation
Indices: 12819976--12820503 Score: 445
Period size: 159 Copynumber: 3.3 Consensus size: 157
12819966 CGGACCGGAC
* * * * * * * *
12819976 CGAGGGTTGCGGCAGTAGGACCTACAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCA
1 CGAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGATCGGGCCGATCCTCAGCTTACGCA
* * * * ** * * * * * *
12820040 TTCTGCCTCTCCGATC-GACTGAGCGCCCGCACGCCCATATCATGGGTTGGCTTAGGCATAGAGA
66 ATATACCCCTCCGGCCAG-CTCAACGCCCACAAGCCCGT-TCCTGGGTTGGCTTAGGCATAGAGA
* *
12820104 GTTCATTCCATGTCTAAGCCGCAGTCGTAT
129 GTTCATTCCATGTCTAAGCCCCAGCCG-AT
*
12820134 CGAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGATCGGGTCGATCCTCAGCTTACGCA
1 CGAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGATCGGGCCGATCCTCAGCTTACGCA
* * * ** * * *
12820199 ATATGCCCCTCCTGCCAGCTCAACGCCCACATGTTCGTTTCGTGGGTTGACTTAGGCATACAGAG
66 ATATACCCCTCCGGCCAGCTCAACGCCCACAAGCCCG-TTCCTGGGTTGGCTTAGGCATAGAGAG
* ** *
12820264 TTTATTCCCA-GTCTAAG-ATCAGACCAGAC
130 TTCATT-CCATGTCTAAGCCCCAG-CC-GAT
* * ** * * * * * * *
12820293 CGAGGGTTGCGGCAGTAGGATTGACAGCATGTAG-GGGGGACCAGGCCGGTCCCCAGCTTGCGTA
1 CGAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGATCGGGCCGATCCTCAGCTTACGCA
* * * * * ** *
12820357 TTCTACCTCTCCGGCCAGCTGAGCGCCCGTAAGCCCGTTCCTGGGTTGGCTTAGGCATAGGGAGT
66 ATATACCCCTCCGGCCAGCTCAACGCCCACAAGCCCGTTCCTGGGTTGGCTTAGGCATAGAGAGT
*
12820422 TCATTCCATGTCTAAGCCCCAACCGGAT
131 TCATTCCATGTCTAAGCCCCAGCC-GAT
*
12820450 CGAGGGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGATCGGGCCGATCCT
1 CGAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGATCGGGCCGATCCT
12820504 TGGCTTGCAG
Statistics
Matches: 287, Mismatches: 74, Indels: 18
0.76 0.20 0.05
Matches are distributed among these distances:
156 3 0.01
157 67 0.23
158 98 0.34
159 113 0.39
160 6 0.02
ACGTcount: A:0.20, C:0.28, G:0.32, T:0.20
Consensus pattern (157 bp):
CGAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGATCGGGCCGATCCTCAGCTTACGCA
ATATACCCCTCCGGCCAGCTCAACGCCCACAAGCCCGTTCCTGGGTTGGCTTAGGCATAGAGAGT
TCATTCCATGTCTAAGCCCCAGCCGAT
Found at i:12820555 original size:316 final size:312
Alignment explanation
Indices: 12819937--12820751 Score: 999
Period size: 316 Copynumber: 2.6 Consensus size: 312
12819927 CCCAGTCTAA
*
12819937 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGTAGGACCT-AC
1 GCATAC-GAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGGCAGTAGGA-TTGAC
* * * **
12820001 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGC
63 AGCACGCAGGGGGGACCAGGCCGGTCCCCAGCTTGCGCATTCTGCCTCTCCGGCCG-CTGAGCGC
* * * * **
12820066 CCGCACGCCCATATCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCGCAGTCG
127 CCGTACGCCCGT-TCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCG
* *
12820131 TATCGAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGATCGGGTCGATCCTCAGCTTAC
191 GATCGAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGATCGGGCCGATCCTCAGCTTA-
* * *
12820196 GCAATATGCCCCTCCTGCCAGCTCAACGCCCACATGTTCGTTTCGTGGGTTGACTTAG
255 GCAATATGCCCCTCCTGCCAGCTCAACACCCACACGCTCGTTTCGTGGGTTGACTTAG
* *
12820254 GCATACAGAGTTTATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATTGACA
1 GCATAC-GAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGGCAGTAGGATTGACA
* * * *
12820319 GCATGTAGGGGGGACCAGGCCGGTCCCCAGCTTGCGTATTCTACCTCTCCGGCCAGCTGAGCGCC
64 GCACGCAGGGGGGACCAGGCCGGTCCCCAGCTTGCGCATTCTGCCTCTCCGGCC-GCTGAGCGCC
* *
12820384 CGTAAGCCCGTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGA
128 CGTACGCCCGTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGA
* **
12820449 TCGAGGGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGATCGGGCCGATCCTTGGCTT-GCA
193 TCGAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGATCGGGCCGATCCTCAGCTTAGCA
* * * * * * *
12820513 GATTATGCCTCTTC-GATCGGCTTAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
258 -A-TATGCCCCTCCTG-CCAGCTCAACACCCACACGCTCGTTTCGTGGGTTGACTTAG
** * * * *
12820570 GCATACGAAGTTCATTCCCAGTCTAAGATCGAATTGGACTGAGGGTTACGGTAGTAGGATCGACA
1 GCATACG-AGTTCATTCCCAGTCTAAGATCG-ACCGGACCGAGGGTTGCGGCAGTAGGATTGACA
** ** * * *
12820635 GCACGCAGGGGGGA-TTGAGCCGGTCCCCAGCTTGTACATTCTGCCTTTTCGGCCTGCTGAGTGC
64 GCACGCAGGGGGGACCAG-GCCGGTCCCCAGCTTGCGCATTCTGCCTCTCCGGCC-GCTGAGCGC
* *
12820699 CCGTACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCT
127 CCGTACGCCCG-TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
12820752 GAGCATATGG
Statistics
Matches: 428, Mismatches: 61, Indels: 18
0.84 0.12 0.04
Matches are distributed among these distances:
314 3 0.01
315 5 0.01
316 260 0.61
317 159 0.37
318 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (312 bp):
GCATACGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGCGGCAGTAGGATTGACAGC
ACGCAGGGGGGACCAGGCCGGTCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGCTGAGCGCCCGT
ACGCCCGTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCG
AGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGATCGGGCCGATCCTCAGCTTAGCAATA
TGCCCCTCCTGCCAGCTCAACACCCACACGCTCGTTTCGTGGGTTGACTTAG
Found at i:12820585 original size:159 final size:158
Alignment explanation
Indices: 12819937--12820745 Score: 610
Period size: 158 Copynumber: 5.1 Consensus size: 158
12819927 CCCAGTCTAA
* ** ** * *
12819937 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGTAGGACCTACA
1 GCATACGAAGTTCATTCCCAGTCTAAGCCCCAACCGGACCGAGGGTTGCGGCAGCAGGACCGACA
* * * *
12820002 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATC-GACTGAGCGC
66 GCACGTAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCAG-CTGAGCGC
* * * *
12820066 CCGCACGCCCATATCATGGGTTGGCTTAG
130 CCGCACGCCCGTTTCGTGGGTTGACTTAG
* ** * * *
12820095 GCATA-GAGAGTTCATT-CCATGTCTAAGCCGCAGTCGTATCGAGGGTTGTGGCAGCAGGACCGA
1 GCATACGA-AGTTCATTCCCA-GTCTAAGCCCCAACCGGACCGAGGGTTGCGGCAGCAGGACCGA
* * * * * * * *
12820158 CAGCACGTAGAGGGGGATCGGGTCGATCCTCAGCTTACGCAATATGCCCCTCCTG-CCAGCTCAA
64 CAGCACGTAG-GGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCC-GACCAGCTGAG
* * **
12820222 CGCCCACATGTTCGTTTCGTGGGTTGACTTAG
127 CGCCCGCACGCCCGTTTCGTGGGTTGACTTAG
* ** * * **
12820254 GCATAC-AGAGTTTATTCCCAGTCTAAG-ATCAGACCAGACCGAGGGTTGCGGCAGTAGGATTGA
1 GCATACGA-AGTTCATTCCCAGTCTAAGCCCCA-ACCGGACCGAGGGTTGCGGCAGCAGGACCGA
* * * * * * *
12820317 CAGCATGTAGGGGGGACCAGGCCGGTCCCCAGCTTGCGTATTCTACCTCTCCGGCCAGCTGAGCG
64 CAGCACGTAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCAGCTGAGCG
* * * *
12820382 CCCGTAAGCCCG-TTCCTGGGTTGGCTTAG
129 CCCGCACGCCCGTTTCGTGGGTTGACTTAG
* * * * *
12820411 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACCGGATCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGAAGTTCATTCCCA-GTCTAAGCCCCAACCGGACCGAGGGTTGCGGCAGCAGGACCGAC
* *** * * * *
12820475 AGCACGTAGAGGGGGATCGGGCCGATCCTTGGCTTGCAG-ATTATGCCTCTTCGATCGGCTTAGC
65 AGCACGTAG-GGGGGACCGGGCCGATCCCCAGCTTGC-GCATTATGCCTCTCCGACCAGCTGAGC
* *
12820539 ACCCGCACGCTCGTTTCGTGGGTTGACTTAG
128 GCCCGCACGCCCGTTTCGTGGGTTGACTTAG
** * ** * * * * *
12820570 GCATACGAAGTTCATTCCCAGTCTAAGATCGAATTGGACTGAGGGTTACGGTAGTAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGCCCCAACCGGACCGAGGGTTGCGGCAGCAGGACCGACA
* ** * * ** * * * * * *
12820635 GCACGCAGGGGGGATTGAGCCGGTCCCCAGCTTGTACATTCTGCCTTTTCGGCCTGCTGAGTGCC
66 GCACGTAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCAGCTGAGCGCC
* * * *
12820700 CGTACGCTCGTTTCATGGGTTGGCTTAG
131 CGCACGCCCGTTTCGTGGGTTGACTTAG
* *
12820728 GCATATGGAGTTCATTCC
1 GCATACGAAGTTCATTCC
12820746 ATGTCTGAGC
Statistics
Matches: 499, Mismatches: 135, Indels: 34
0.75 0.20 0.05
Matches are distributed among these distances:
156 3 0.01
157 72 0.14
158 233 0.47
159 183 0.37
160 8 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGCCCCAACCGGACCGAGGGTTGCGGCAGCAGGACCGACA
GCACGTAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCAGCTGAGCGCC
CGCACGCCCGTTTCGTGGGTTGACTTAG
Found at i:12821145 original size:26 final size:26
Alignment explanation
Indices: 12821095--12821147 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12821085 GTTGACTTAG
*
12821095 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
*
12821121 GCATATGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCTAATCTAA
12821147 G
1 G
12821148 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:12821596 original size:156 final size:154
Alignment explanation
Indices: 12821121--12821611 Score: 414
Period size: 159 Copynumber: 3.1 Consensus size: 154
12821111 CCTAGTCTAA
* * * **
12821121 GCATATGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTGTGACAGCAGGATAGGTA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGTGACAGCAGGATCGACA
* ** * * * * * * *
12821186 GCATGCAAGGGGGACCGAACGGATCCCCGGCTTGCGCTTTCTGCCACTCTGATCAGCTGAGCACC
66 GCACGC-AGGGGGACCGGTCGG-T-CCCAGCTTGCGCATTCTACCTCTC-CAGCAGCTGAGC-GC
*
12821251 CGCATGC-CT-GTTTCATGGGTTGGCTTAG
126 C-CATACGCTCGTTTCATGGGTTGGCTTAG
* * * ** ** ** *
12821279 GCATAGGGAGTTCATT-TCATCTCTAAGCCCCAG-TCGGACCGAAAGTTGTGGTAGCAGGACCGA
1 GCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGATCGGACCGAGGGTTGTGACAGCAGGATCGA
* * * * * * * *
12821342 CAGCACGTAGAGGGGGATCGGGTCGATCCCCGACTTGCGTATTCTACCTCTCCGACCTGTTGAGC
64 CAGCACG--CAGGGGGA-CCGGTCGGTCCCAG-CTTGCGCATTCTACCTCTCC-AGCAGCTGAGC
** * *
12821407 GCCCGCATGCTCGTTTCATGGGTTGACTTAG
124 GCCCATACGCTCGTTTCATGGGTTGGCTTAG
* * * *
12821438 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGTGACAGCAGGATCGACA
* *
12821503 GCACGCAGGGGGACCTGGTCGGTCCCAGCTTGTGCATTCTACCTCTCCAGCGGGCTGAGCGCCCA
66 GCACGCAGGGGGACC-GGTCGGTCCCAGCTTGCGCATTCTACCTCTCCAGC-AGCTGAGCGCCCA
12821568 TACGCTCGTTTCATGGGTTGGCTTAG
129 TACGCTCGTTTCATGGGTTGGCTTAG
*
12821594 GCATACGGAGTTTATTCC
1 GCATACGGAGTTCATTCC
12821612 ATGTCCAAGC
Statistics
Matches: 257, Mismatches: 63, Indels: 28
0.74 0.18 0.08
Matches are distributed among these distances:
155 2 0.01
156 68 0.26
157 20 0.08
158 60 0.23
159 101 0.39
160 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGTGACAGCAGGATCGACA
GCACGCAGGGGGACCGGTCGGTCCCAGCTTGCGCATTCTACCTCTCCAGCAGCTGAGCGCCCATA
CGCTCGTTTCATGGGTTGGCTTAG
Found at i:12821783 original size:184 final size:182
Alignment explanation
Indices: 12821446--12821800 Score: 507
Period size: 184 Copynumber: 1.9 Consensus size: 182
12821436 AGGCATACGA
* *
12821446 AGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGACAGCAGGATCGACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAG
* * * * * *
12821511 GGGGACCTGGTCGGTCCCAGCTTGTGCATTCTACCTCTCCAGCGGGCTGAGCGCCCATACGCTCG
66 GGGGACCAGGTCGATCCCAGCTTGGGCATTCTACCTCTCCAGCCGACTGAGCGCCCACACGCTCG
*
12821576 TTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCCAAGCATATAG
131 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGCATATAG
* ** * *
12821628 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAGCAGGATCGACAGCATGTAG
1 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAG
* * *
12821693 AGGGGACCAGGTCGAT-CCATGGCTTGGGCATTCTGCCTCTCC-GACCGACTGAGCGCTCGCACG
66 -GGGGACCAGGTCGATCCCA--GCTTGGGCATTCTACCTCTCCAG-CCGACTGAGCGCCCACACG
12821756 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
127 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
12821801 TAAACCCCAG
Statistics
Matches: 152, Mismatches: 17, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
182 61 0.40
183 14 0.09
184 77 0.51
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (182 bp):
AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGACAGCAGGATCGACAGCACGCAG
GGGGACCAGGTCGATCCCAGCTTGGGCATTCTACCTCTCCAGCCGACTGAGCGCCCACACGCTCG
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCCAAGCATATAG
Found at i:12822075 original size:26 final size:26
Alignment explanation
Indices: 12822046--12822098 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12822036 GTTGACTTAG
*
12822046 GCATATGGAATTCATCCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
* **
12822072 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
12822098 G
1 G
12822099 ATCGAACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAGTCTAA
Found at i:12822439 original size:26 final size:26
Alignment explanation
Indices: 12822389--12822441 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12822379 GTTGGCTTAG
*
12822389 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
12822415 GCATACGGAGTTCATTCGCA-ATCTAA
1 GCATACGGAGTTCATTC-CATATCTAA
12822441 G
1 G
12822442 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:12823146 original size:25 final size:26
Alignment explanation
Indices: 12823111--12823162 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
12823101 GTTGACTTAG
*
12823111 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
12823136 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12823162 G
1 G
12823163 ATCGAATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12823460 original size:140 final size:140
Alignment explanation
Indices: 12823208--12823460 Score: 355
Period size: 140 Copynumber: 1.8 Consensus size: 140
12823198 ATAGCACACA
* * * *
12823208 AGGGGGACCGGGCCGATCCCCGACTTGCACATTTTGCCTCTCCGACCGGCTGAGCACCCGCACGC
1 AGGGGGACCGGGCCGATCCCCGACTTACACATTATGCCTCTCCGACCGGCTCAACACCCGCACGC
* * * *
12823273 CCGTTTCGTGGGATGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCGAGG
66 CCGTTTCGTGGGATGACTTAAGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTTGGACCGAGG
12823338 GTTATGCTAG
131 GTTATGCTAG
* * * * *
12823348 AGGGGGACCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCGACTGGCTCAACGCTCGCACGC
1 AGGGGGACCGGGCCGATCCCCGACTTACACATTATGCCTCTCCGACCGGCTCAACACCCGCACGC
* *
12823413 TCGTTTCGTGGGCTGACTTAAGCATACGAAGTTCATTCCCA-GTCTAAG
66 CCGTTTCGTGGGATGACTTAAGCATACGAAGTTCATT-CCATGTCTAAG
12823461 ATCGGATCAG
Statistics
Matches: 97, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
140 94 0.97
141 3 0.03
ACGTcount: A:0.18, C:0.30, G:0.28, T:0.23
Consensus pattern (140 bp):
AGGGGGACCGGGCCGATCCCCGACTTACACATTATGCCTCTCCGACCGGCTCAACACCCGCACGC
CCGTTTCGTGGGATGACTTAAGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTTGGACCGAGG
GTTATGCTAG
Found at i:12823622 original size:26 final size:26
Alignment explanation
Indices: 12823593--12823644 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12823583 TTGGCTTAGC
12823593 CATACGAAGTTCATT-CCATGTCTAAG
1 CATACGAAGTTCATTCCCA-GTCTAAG
12823619 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
12823645 ATCGAATAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:12824478 original size:26 final size:26
Alignment explanation
Indices: 12824442--12824493 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12824432 TTGGCTTAGC
12824442 CATACAAAGTTCATT-CCATGTCTAAG
1 CATACAAAGTTCATTCCCA-GTCTAAG
*
12824468 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACAAAGTTCATTCCCAGTCTAAG
12824494 ATCGGATAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (26 bp):
CATACAAAGTTCATTCCCAGTCTAAG
Found at i:12824769 original size:849 final size:848
Alignment explanation
Indices: 12823082--12825363 Score: 2957
Period size: 849 Copynumber: 2.7 Consensus size: 848
12823072 GGCTGAGCGT
*
12823082 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATACAGAG
1 CCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAG
* * *
12823146 TTTATTCCCAGTCTAAGATCGAATTGGATCGAGGGTTGCGGTAGCAGGATCGATAGCACACAAGG
66 TTCATTCCCAGTCTAAGATCGAA-TGGACCGAGGGTTGCGGTAGCAGGATCGATAGCACGC-AGG
* * * *
12823211 GGGACCGGGCCGATCCCCGACTTGCACATTTTGCCTCTCCGACCGGCTGAGCACCCGCACGCCCG
129 GGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTAAGCACCCGCACGCCCG
*
12823276 TTTCGTGGGATGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCGAGGGTT
194 TTTCGTGGGATGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTT
* * * * *
12823341 AT-GCTAGAGGGGGACCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCGACTGGCTCAACGC
259 ATGGC-AAAGGGGGACCGGGTCGATCCCCGACTTACACATTATGACTCTCCGACCGGCTCAACAC
12823405 TCGCACGCTCGTTTCGTGGGCTGACTTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCA
323 TCGCACGCTCGTTTCGTGGGCTGACTTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCA
* *
12823470 GATAGAGGGTTGCGACAACAGAATCGACAGCACGCAGGGGGGATCGGGTCGATCCTCGACTTGCA
388 GACAGAGGGTTGCGACAACAGAATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCA
* * * *
12823535 TATTCTGCCTCTCCGGCTAGCGGAGTGCCCGTACGCTCGTTTTGTGGGTTGGCTTAGCCATACGA
453 CATTCTGCCTCTCCGGCTAGCGGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGCCATACAA
* *
12823600 AGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAATAGGATCGAGGGTT
518 AGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAATAGGACCGAGAGTT
*
12823665 ACGGAAGTAGGACCAGCAGCAAGATCGGTAGCATGTAGGGGGGACCGGGCCGATCCCCAACTTAC
583 ACGGAAGTAGGACCAGCAGCAAGATCGGTAGCATGCAGGGGGGACCGGGCCGATCCCCAACTTAC
* * * *
12823730 GCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACACTTGTTTCGTGGTTTGGCTTAGGCATACG
648 GCATTCTACCTCTCCGATCGGCTGAGCACCCGCACACTTGTTTCATGGTTTAGCTTAGGCATACG
* *
12823795 AAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGCAGCAGGATTGACAGGAGGCA
713 AAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCAGGATCGACAGGAGGCA
* *
12823860 GAGGGGGACCAGGTTGATCCCCGATTTACGCATTATGCCTCTTCGACTGGCCTCTCCGACCAGTT
778 GAGGGGGACCAGGTTGATCCCCGATTTACGCATTATGCCTCTCCGACTGGCCTCTCCGACCAGCT
*
12823925 GAGTGC
843 AAGTGC
* * *
12823931 CCGCACACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTTTAAGCATATAGAG
1 CCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAG
* * * *
12823996 TTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTACGATAGCAGGATCGGTAGCACGCAGGG
66 TTCATTCCCAGTCTAAGATCGAA-TGGACCGAGGGTTGCGGTAGCAGGATCGATAGCACGCA-GG
* * * *
12824061 GGGACCGAGCCGATCCTCGACTTGTGCATTCTGCCTCTCCGACCGGTTTAGCACCCGCACGCCCG
129 GGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTAAGCACCCGCACGCCCG
12824126 TTTCGTGGGATGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTT
194 TTTCGTGGGATGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTT
* **
12824191 ATGGCAAAGGGGGATCGGGTCGATCCCCGACTTACACATTATGACTCAT-TTACCGGCTCAACAC
259 ATGGCAAAGGGGGACCGGGTCGATCCCCGACTTACACATTATGACTC-TCCGACCGGCTCAACAC
* * *
12824255 TCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCA
323 TCGCACGCTCGTTTCGTGGGCTGACTTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCA
* * * *
12824320 GACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCG
388 GACAGAGGGTTGCGACAACAGAATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCA
* * *
12824385 CATTCTGCCTCTCCGGCTGGCTGAGCG-TCGCT-CGCTCGTTTCGTGGGTTGGCTTAGCCATACA
453 CATTCTGCCTCTCCGGCTAGCGGAGCGCCCG-TACGCTCGTTTCGTGGGTTGGCTTAGCCATACA
*
12824448 AAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATAGGACCGAGAGT
517 AAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAATAGGACCGAGAGT
** * *
12824513 TAC-GATAGTAGGACCAGCAGCAAGATCGGTAGCATGCAGGGGGGATTGGGCCGATCCCTAGCTT
582 TACGGA-AGTAGGACCAGCAGCAAGATCGGTAGCATGCAGGGGGGACCGGGCCGATCCCCAACTT
* * **
12824577 GCGCATTCTACCTCTCCGATCGGCTGAGCACCTGCACGTTTGTTTCATGGTTTAGCTTAGGCATA
646 ACGCATTCTACCTCTCCGATCGGCTGAGCACCCGCACACTTGTTTCATGGTTTAGCTTAGGCATA
*
12824642 C-AGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCTAGGGTTGTGGCAGCAGGATCGACAGGAG
711 CGA-AGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCAGGATCGACAGGAG
* * * *
12824706 GTAGAGGGGGACCAGGTTGATCCCCGGTTTACGCATTATGCCTCTCCGACTGGCCTTTCCGACCG
775 GCAGAGGGGGACCAGGTTGATCCCCGATTTACGCATTATGCCTCTCCGACTGGCCTCTCCGACCA
12824771 GCTAAGTGC
840 GCTAAGTGC
* * * *
12824780 CCACACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAAAG
1 CCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAG
* * * *
12824845 GTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGCGGTAGTAGGATCGATAACACGTAGGG
66 TTCATTCCCAGTCTAAGATCGAAT-GGACCGAGGGTTGCGGTAGCAGGATCGATAGCACGCAGGG
* * * * * * * *
12824910 GGACCGAGTCGATCCCCGGCTTGCGTATTCTACCTCTTC-AGTCAGCTAAGCGCCCGCACGCCCG
130 GGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGA-CCGGCTAAGCACCCGCACGCCCG
* * * *
12824974 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
194 TTTCGTGGGATGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGG-T
* * * * *
12825039 GTGGCAGTGGGACCAGTAGCATGCAGAGGCAGACTGGGCCGATCTCC-AGCTTGCACATTATGTC
258 -T---A-T-GG--CA--A--A-G--G-GG--GACCGGGTCGATCCCCGA-CTTACACATTATGAC
* * * * * * * * * *
12825103 TCTTCGATCGGGTCAGCGCCCGCACTCTCATTTCGTGGGTTGACTTATGCATACGAAGTTCATTC
304 TCTCCGACCGGCTCAACACTCGCACGCTCGTTTCGTGGGCTGACTTAAGCATACGAAGTTCATTC
* * * * * * * * * *
12825168 CCAGTCTAAGATCGGA-CCGAACCGAGGGTTGAGGCAGCAGGATCGATAGCTCGCAGGGGGAACC
369 CCAGTCTAAGATCGGATCAG-ACAGAGGGTTGCGACAACAGAATCGACAGCACGCAGGGGGGATC
*** ** * * ** * * * * * * *
12825232 GGGTCGATCTTTGGTTTCCACATTCTACCTCT-TTGATCGGCTGAGTGCCCGGACGTTCGTTTTG
433 GGGTCGATCCCCGACTTGCACATTCTGCCTCTCCGGCT-AGCGGAGCGCCCGTACGCTCGTTTCG
* * * ** *
12825296 TGGGTTAGCTTGGGCATACGGAGTTCATTCCATGTTTAAGCATACGAAGTTCATTCCCAGTCTAA
497 TGGGTTGGCTTAGCCATACAAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
12825361 GAT
562 GAT
12825364 TTTGAGCCAC
Statistics
Matches: 1252, Mismatches: 147, Indels: 49
0.86 0.10 0.03
Matches are distributed among these distances:
847 1 0.00
848 116 0.09
849 486 0.39
850 392 0.31
851 3 0.00
853 1 0.00
854 1 0.00
855 2 0.00
857 2 0.00
859 1 0.00
861 1 0.00
862 1 0.00
864 1 0.00
865 2 0.00
866 6 0.00
867 163 0.13
868 73 0.06
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (848 bp):
CCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAG
TTCATTCCCAGTCTAAGATCGAATGGACCGAGGGTTGCGGTAGCAGGATCGATAGCACGCAGGGG
GACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTAAGCACCCGCACGCCCGTT
TCGTGGGATGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTAT
GGCAAAGGGGGACCGGGTCGATCCCCGACTTACACATTATGACTCTCCGACCGGCTCAACACTCG
CACGCTCGTTTCGTGGGCTGACTTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGAC
AGAGGGTTGCGACAACAGAATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCACAT
TCTGCCTCTCCGGCTAGCGGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGCCATACAAAGT
TCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAATAGGACCGAGAGTTACG
GAAGTAGGACCAGCAGCAAGATCGGTAGCATGCAGGGGGGACCGGGCCGATCCCCAACTTACGCA
TTCTACCTCTCCGATCGGCTGAGCACCCGCACACTTGTTTCATGGTTTAGCTTAGGCATACGAAG
TTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCAGGATCGACAGGAGGCAGAG
GGGGACCAGGTTGATCCCCGATTTACGCATTATGCCTCTCCGACTGGCCTCTCCGACCAGCTAAG
TGC
Found at i:12824849 original size:26 final size:26
Alignment explanation
Indices: 12824809--12824861 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12824799 GTTGACTTAG
* *
12824809 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACAAAGGTCATCCCCAGTCTAA
*
12824835 GCATACAAAGGTCATTCCCAGTCTAA
1 GCATACAAAGGTCATCCCCAGTCTAA
12824861 G
1 G
12824862 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAAAGGTCATCCCCAGTCTAA
Found at i:12825361 original size:26 final size:26
Alignment explanation
Indices: 12825309--12825361 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12825299 GTTAGCTTGG
* *
12825309 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGAAGTTCATTCCATGTCTAA
12825335 GCATACGAAGTTCATTCCCA-GTCTAA
1 GCATACGAAGTTCATT-CCATGTCTAA
12825361 G
1 G
12825362 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:12832272 original size:158 final size:157
Alignment explanation
Indices: 12831949--12832442 Score: 466
Period size: 158 Copynumber: 3.2 Consensus size: 157
12831939 CCTAGTCCAA
* * * * * *
12831949 GCATACGGAGTTCATT-CATAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGA-TAGG
1 GCATACGGAGTTCATTCCAT-GTCTAAGACCAGACCAGACCAAGGGTTGTGGCAGCAGGACCA-A
* * * * * ** * *
12832012 CAGCACGTAAGGGGGATCGGGCCGAT-CC---CTGGCGCATTCTGCCTCTTCGGTCGGCTGAGCG
64 CAACACGCAGGGGGGACCGAGCCGATCCCAGACTTACGCATTCTGCCTC-TCCGCCGGCTGAGCG
*
12832073 CCCGCACGC-CTGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTC-GTTTCATGGGTTGGCTTAG
* * * * *
12832103 GCATAGGGAGTTCATTCCATGTCTAAGCCCAAGGCC-GACCGAGGGTTGTGGCAGC-GAGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAGACC-AGACCAGACCAAGGGTTGTGGCAGCAG-GACCAA
* * * * * *
12832166 CAACATGCAGAGGGGGACGGAGCCGATCCCAGGCTTTCGCATTATGCCTCTCCGCCGGCTCAGCG
64 CAACACGCAG-GGGGGACCGAGCCGATCCCAGACTTACGCATTCTGCCTCTCCGCCGGCTGAGCG
* *
12832231 CCCGCACGCTCATTTCATGGGTTGACTTAG
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * ** * *
12832261 GCATACAGAGTTCATTCCCTATCTAAGATCAGACCAGACTAATTGTTGTGGTAGCAGGATCAACA
1 GCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACCAAGGGTTGTGGCAGCAGGACCAACA
* * *
12832326 GCACGCAGGGGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCACC
66 ACACGCAGGGGGGACCGAGCCGATCCCAGACTTACGCATTCTGCCTCTCCG-CCGGCTGAGCGCC
* *
12832391 TGCACGCTGGTTTCATGGGTTGGCTTAG
130 CGCACGCTCGTTTCATGGGTTGGCTTAG
12832419 GCATACGGAGTTCATTCCATGTCT
1 GCATACGGAGTTCATTCCATGTCT
12832443 CAGCATACGA
Statistics
Matches: 272, Mismatches: 55, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
154 49 0.18
155 20 0.07
156 2 0.01
157 42 0.15
158 143 0.53
159 16 0.06
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACCAAGGGTTGTGGCAGCAGGACCAACA
ACACGCAGGGGGGACCGAGCCGATCCCAGACTTACGCATTCTGCCTCTCCGCCGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:12832823 original size:26 final size:26
Alignment explanation
Indices: 12832787--12832839 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12832777 GTTGACTTAG
12832787 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
12832813 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
12832839 G
1 G
12832840 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:12833313 original size:26 final size:26
Alignment explanation
Indices: 12833283--12833335 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12833273 GTTGACTTAG
* *
12833283 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
12833309 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
12833335 G
1 G
12833336 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:12834224 original size:26 final size:26
Alignment explanation
Indices: 12834188--12834238 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12834178 GTTGACTTAG
12834188 GCATACAGAGTTCATCCCCAATCTAC
1 GCATACAGAGTTCATCCCCAATCTAC
* * *
12834214 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAATCTA
12834239 AGATCAAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAC
Found at i:12835243 original size:26 final size:26
Alignment explanation
Indices: 12835213--12835265 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12835203 GTTGACTTAG
12835213 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
** * *
12835239 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
12835265 G
1 G
12835266 ATAGAACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:12837890 original size:26 final size:26
Alignment explanation
Indices: 12837860--12837912 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12837850 GTTGACTTAG
12837860 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* **
12837886 GCATATGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12837912 G
1 G
12837913 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12838387 original size:158 final size:158
Alignment explanation
Indices: 12837893--12838396 Score: 425
Period size: 158 Copynumber: 3.2 Consensus size: 158
12837883 TAAGCATATG
* * * * * * *
12837893 GAGTTCATTGCCAGTCTAAGATCAGATCGGACCGAAGGTTGCGGTAGTAGAAT-AGGCAGCACGT
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGAATCA-ACAGCACGC
* * * * * * *
12837957 AGGGGGGACCGGGCAGAT-CCTCGACTTGCGCATTCTACCTCTCTGGCCGACTAAG-TGCCTGCA
65 AGGGGGGACCGGGCCGATCCCT-AACTTGCGCATTCTGCCTCTCCGGACGACTGAGCGGCC-GCA
* **
12838020 CGC-CTGTTTCGTGGGTTGGCTTAGGCATAGG
128 CGCTC-GTTTCATGGGTTGGCTTAGGCATACA
* * ** ** * * * *
12838051 GAGTACATT-CCATGTCTAGGCCCCAACCGGACCGAGGGTTGTGGTAGCGGGA-CTGACAGCACG
1 GAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGAATC-AACAGCACG
* *** * *
12838114 CAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCC-GACTGAC-GCAGCGCCCG
64 CAG-GGGGGACCGGGCCGATCCCTAACTTGCGCATTCTGCCTCTCCGGAC-GACTG-AGCGGCCG
* * * *
12838177 TACGCTCATTTCCTGGGTTGACTTAGGCATACA
126 CACGCTCGTTTCATGGGTTGGCTTAGGCATACA
* * **
12838210 GAGTTCATTCCCAGCCTAAGATCGGACCGGACTGAGGGTTGCGACAGCAGAATCAACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGAATCAACAGCACGCA
* * *
12838275 GGGGGGACCGGACCGATCCCTAACCTT-CGCATTCTGCCTCTCCGGTCGACTGAGCGGCCGCATG
66 GGGGGGACCGGGCCGATCCCTAA-CTTGCGCATTCTGCCTCTCCGGACGACTGAGCGGCCGCACG
12838339 CTCGTTTCATGGGTTGGCTTAGGCATACA
130 CTCGTTTCATGGGTTGGCTTAGGCATACA
12838368 GAGTTCATT-CCATGTCTAAGCATACGGAC
1 GAGTTCATTCCCA-GTCTAAG-AT-CGGAC
12838397 TTCGTTCCCA
Statistics
Matches: 269, Mismatches: 60, Indels: 32
0.75 0.17 0.09
Matches are distributed among these distances:
157 6 0.02
158 132 0.49
159 117 0.43
160 14 0.05
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGAATCAACAGCACGCA
GGGGGGACCGGGCCGATCCCTAACTTGCGCATTCTGCCTCTCCGGACGACTGAGCGGCCGCACGC
TCGTTTCATGGGTTGGCTTAGGCATACA
Found at i:12838404 original size:26 final size:26
Alignment explanation
Indices: 12838361--12838420 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 26
12838351 GTTGGCTTAG
*
12838361 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGACTTCATTCCCA-GTCTAA
* *
12838387 GCATACGGACTTCGTTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
12838413 G-AT-CAGAC
1 GCATACAGAC
12838421 CGGACTAAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
24 4 0.14
25 2 0.07
26 20 0.69
27 3 0.10
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAGTCTAA
Found at i:12838490 original size:343 final size:343
Alignment explanation
Indices: 12838087--12838731 Score: 947
Period size: 343 Copynumber: 1.9 Consensus size: 343
12838077 CCGGACCGAG
* * *
12838087 GGTTGTGGTAGCGGGACTGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTAT
1 GGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTAT
* *
12838152 GCCTCTCCGA-CTGACGCAGCGCCCGTACGCTCATTTCCTGGGTTGACTTAGGCATACAGAGTTC
66 GCCTCTCCGATC-GACGCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTC
* * * * **
12838216 ATTCCCAGCCTAAGATCGGACCGGACTGAGGGTTGCGACAGCAGAATCAACAGCACGC-AGGGGG
130 ATT-CCAGCCTAAAATCAGACCGGACCGAGGGTTACGACAGCAGAATCAACAGCACGCAAGGAAG
* * *
12838280 GACCGGACCGATCCCTAACCTT-CGCATTCTGCCTCTCCGGTCGACTGAGCGGCC-GCATGCTCG
194 GACCGGACCAATCCC-AACCTTGCGCATTCTGCCTCTCCGGCCGACTGAGC-GCCTGCACGCTCG
12838343 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGACTTCGTTCCCAG
257 TTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGACTTCGTTCCCAG
12838408 TCTAAGATCAGACCGGACTAAA
322 TCTAAGATCAGACCGGACTAAA
12838430 GGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTAT
1 GGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTAT
* * *
12838495 GCCTCTCCGATCGACTCAGTGCCCGCACGCTCATTTTATGGGTTGACTTAGGCATACAGAGTTCA
66 GCCTCTCCGATCGACGCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCA
* * ** *
12838560 TTCCAGTCTAAAATCAGACCGGACCGAGGGTTACGACAGCAGGATTGACAGTACGCAAGGAAGGA
131 TTCCAGCCTAAAATCAGACCGGACCGAGGGTTACGACAGCAGAATCAACAGCACGCAAGGAAGGA
* * * * * * *
12838625 TCGGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCTGCACGTTCGTTTC
196 CCGGACCAATCCCAACCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCTGCACGCTCGTTTC
**
12838690 ATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
261 ATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
12838732 CCCAGCCGGA
Statistics
Matches: 267, Mismatches: 31, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
342 52 0.19
343 214 0.80
344 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (343 bp):
GGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTAT
GCCTCTCCGATCGACGCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCA
TTCCAGCCTAAAATCAGACCGGACCGAGGGTTACGACAGCAGAATCAACAGCACGCAAGGAAGGA
CCGGACCAATCCCAACCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCTGCACGCTCGTTTC
ATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGACTTCGTTCCCAGTCTA
AGATCAGACCGGACTAAA
Found at i:12838549 original size:185 final size:183
Alignment explanation
Indices: 12838203--12838570 Score: 461
Period size: 185 Copynumber: 2.0 Consensus size: 183
12838193 GTTGACTTAG
* * * * *
12838203 GCATACAGAGTTCATTCCCAGCCTAAGATCGGACCGGACTGAGGGTTGCGACAGCAGAATCAACA
1 GCATACAGACTTCATTCCCAGCCTAAGATCAGACCGGACTAAAGGTTGCGACAGCAGAACCAACA
* * * *
12838268 GCACGCAGGGGGGACCGGACCGATCCCTAACCTTCGCATTCTGCCTCTCCGGTCGACTGAGCGGC
66 GCACGCAGGGGGGACCGGACCGATCCCTAACCTTCGCATTATGCCTCTCCGATCGACTCAGCGCC
* * *
12838333 CGCATGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
131 CGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCA-GTCTAA
* * * * * *
12838387 GCATACGGACTTCGTTCCCAGTCTAAGATCAGACCGGACTAAAGGTTGTGGCAGC-GAGACCGAC
1 GCATACAGACTTCATTCCCAGCCTAAGATCAGACCGGACTAAAGGTTGCGACAGCAGA-ACCAAC
* * *** *
12838451 AGCACGCAGAGGGGGATCGGGCCGATCCC-CGGCTTGCGCATTATGCCTCTCCGATCGACTCAGT
65 AGCACGCAG-GGGGGACCGGACCGATCCCTAACCTT-CGCATTATGCCTCTCCGATCGACTCAGC
*
12838515 GCCCGCACGCTCATTTTATGGGTTGACTTAGGCATACAGAGTTCATTCCAGTCTAA
128 GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCAGTCTAA
12838571 AATCAGACCG
Statistics
Matches: 156, Mismatches: 25, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
183 2 0.01
184 68 0.44
185 86 0.55
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (183 bp):
GCATACAGACTTCATTCCCAGCCTAAGATCAGACCGGACTAAAGGTTGCGACAGCAGAACCAACA
GCACGCAGGGGGGACCGGACCGATCCCTAACCTTCGCATTATGCCTCTCCGATCGACTCAGCGCC
CGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCAGTCTAA
Found at i:12838628 original size:501 final size:496
Alignment explanation
Indices: 12837798--12839449 Score: 1577
Period size: 501 Copynumber: 3.2 Consensus size: 496
12837788 TGATCCACGA
* * * * ***
12837798 TTGCGCATTATGCCTCTCCAGCCGGCTGAGTTCCCGCATGCTCATTTCATGGGTTGACTTAGGCA
1 TTGCGCATTCTGCCTCTCCGGTCGACTGAGCGACCGCATGCTCATTTCATGGGTTGACTTAGGCA
* *
12837863 TACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTGCCAGTCTAAGATCAGATCGGACCGA
66 TACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
* * * * *
12837928 AGGTTGCGGTAGTAGAATAGGCAGCACGTAG-GGGGGACCGGGCAGATCCTCGACTTGCGCATTC
131 AGGTTGCGGCAGCAG-ATCGGCAGCACGTAGAGGGGGATCGGGCAGATCCCCGACTTGCGCATTC
* * * *
12837992 TACCTCTCTGGCCGACTAAGTGCCTGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTAC
195 TACCTCTCCGGTCGACTAAGTGCCCGCACGCCT-TTT-GTGGGTTGGCTTAGGCATAGGGAGTTC
*** * *
12838057 ATTCCATGTCTAGGCCCCA-ACCGGACCGAGGGTTGTGGTAGCGGGACTGACAGCACGCAGAGGG
258 ATTCCATGTCTA-AAACCAGACCGGACCGAGGGTTGTGGCAGC-GGATTGACAGCACGCAGAGGG
* *
12838121 GGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACTGACGCAGCGCCCGTACGCTCAT
321 GGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACTGGCGCAGCGCCCGAACGCTCAT
* * * *
12838186 TTCCTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGCCTAAGATCGGACCGGACTGAGGGTTG
386 TTCATGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
* * *
12838251 CGACAGCAGAATCAACAGCACGCAGGGGGGACCGGACCGATCCCTAACC
450 CGACAGCAGAATCGACAGCACGCAGGGGGGACCGG-CCGATCCC-CAGC
* * *
12838300 TT-CGCATTCTGCCTCTCCGGTCGACTGAGCGGCCGCATGCTCGTTTCATGGGTTGGCTTAGGCA
1 TTGCGCATTCTGCCTCTCCGGTCGACTGAGCGACCGCATGCTCATTTCATGGGTTGACTTAGGCA
* * * * * **
12838364 TACAGAGTTCAT-TCCATGTCTAAGCATACGGACTTCGTTCCCAGTCTAAGATCAGACCGGACTA
66 TACGGAGTTCATCCCCA-GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
* * * * * *
12838428 AAGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATT
130 AAGGTTGCGGCAGC-AGATCGGCAGCACGTAGAGGGGGATCGGGCAGATCCCCGACTTGCGCATT
* * * * * * **
12838493 ATGCCTCTCCGATCGACTCAGTGCCCGCACGCTCATTTTATGGGTTGACTTAGGCATACAGAGTT
194 CTACCTCTCCGGTCGACTAAGTGCCCGCACGC-C-TTTTGTGGGTTGGCTTAGGCATAGGGAGTT
* ** * *
12838558 CATTCCA-GTCTAAAATCAGACCGGACCGAGGGTTACGACAGCAGGATTGACAGTACGCA-AGGA
257 CATTCCATGTCTAAAACCAGACCGGACCGAGGGTTGTGGCAGC-GGATTGACAGCACGCAGAGG-
* * * * * * * * * *
12838621 AGGATCGGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCTGGCCGGCTG-AGCGCCTGCACGTTC
320 GGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACTGGC-GCAGCGCCCGAACGCTC
* * * **
12838685 GTTTCATGGGTTGGCTTAGGCATATGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGG
384 ATTTCATGGGTTGACTTAGGCATA-CGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGG
* * * * *
12838748 GTTGTGGCAACAGGACCCGCAGTAGAATCGACAACATGCATAGGGGGACCAGGCTGATCCCCAGC
446 G-T-T-G---C--GA----CAGCAGAATCGACAGCACGCA-GGGGGGACC-GGCCGATCCCCAGC
* * * * **
12838813 TTGTGCATTATGCCTCTTCGACCGGCCTCTCCAGCCGACTGAGC-ACTCGCAAGCTCGTTTTGTG
1 TTGCGCATTCTGCCTC-T---CCGG----T-----CGACTGAGCGAC-CGCATGCTCATTTCATG
* *
12838877 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCTTATGGAGTTCATTCCCGGTCTAAGA
52 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGA
* * * **
12838942 TCAGACCGGACCGAGGGTTACGGCAGCAGGATCGGCAGCGCGTA-A-GGGGATCGGGTTGATCCC
117 TCAGACCGGACCGAAGGTTGCGGCAGCA-GATCGGCAGCACGTAGAGGGGGATCGGGCAGATCCC
* * *
12839005 CGACTTGCGCATTCTACCCTCTTCGGTCGACTGAGCGCCCGCACGCCCGTTTTGTGGGTTGGCTT
181 CGACTTGCGCATTCTA-CCTCTCCGGTCGACTAAGTGCCCGCACG-CC-TTTTGTGGGTTGGCTT
* * ** *
12839070 AGGCATAGGGAGTTCATTCCATGTCTAAGACCTAG-CTGGATGGAGGGTTGTGGCAGTCGGATCG
243 AGGCATAGGGAGTTCATTCCATGTCTAAAACC-AGACCGGACCGAGGGTTGTGGCAG-CGGATTG
* * * * *
12839134 GCAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGACTGGCTCAG
306 ACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACTGGCGCAG
*
12839199 CGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
371 CGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAAGATCAGA
* * * * * *
12839264 CCGGACCGAAGGTTGCGACAGCGGGATCGACAGCACGTAGGGGGGATCGGGCC-AGTCCCCGGC
435 CCGGACCGAGGGTTGCGACAGCAGAATCGACAGCACGCAGGGGGGA-CCGGCCGA-TCCCCAGC
* ** * * * * *
12839327 TTGCGCATTCTGCCTCTTCGACCGGCTGAACGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCA
1 TTGCGCATTCTGCCTCTCCGGTCGACTGAGCGACCGCATGCTCATTTCATGGGTTGACTTAGGCA
* * * *
12839392 TACGGAGTTCATTCCAAGTCTAAGCATATGGATTTCATTTCCAGTCTAAGATCAGACC
66 TACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACC
12839450 AGATCGAGGG
Statistics
Matches: 917, Mismatches: 178, Indels: 111
0.76 0.15 0.09
Matches are distributed among these distances:
500 11 0.01
501 347 0.38
502 90 0.10
503 5 0.01
504 2 0.00
507 1 0.00
509 2 0.00
510 2 0.00
513 23 0.03
514 56 0.06
515 19 0.02
518 4 0.00
519 2 0.00
521 1 0.00
522 1 0.00
524 1 0.00
525 30 0.03
526 66 0.07
527 242 0.26
528 12 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (496 bp):
TTGCGCATTCTGCCTCTCCGGTCGACTGAGCGACCGCATGCTCATTTCATGGGTTGACTTAGGCA
TACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
AGGTTGCGGCAGCAGATCGGCAGCACGTAGAGGGGGATCGGGCAGATCCCCGACTTGCGCATTCT
ACCTCTCCGGTCGACTAAGTGCCCGCACGCCTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATT
CCATGTCTAAAACCAGACCGGACCGAGGGTTGTGGCAGCGGATTGACAGCACGCAGAGGGGGATC
GGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACTGGCGCAGCGCCCGAACGCTCATTTCAT
GGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAG
CAGAATCGACAGCACGCAGGGGGGACCGGCCGATCCCCAGC
Found at i:12839371 original size:158 final size:157
Alignment explanation
Indices: 12838920--12839415 Score: 586
Period size: 158 Copynumber: 3.1 Consensus size: 157
12838910 CTAAGCTTAT
* * *
12838920 GGAGTTCATTCCCGGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGGCAGCGCGT
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC-GGATCGGCAGCACGT
* ** * ** *
12838985 A-AGGGGATCGGGTTGATCCCCGACTTGCGCATTCTACCCTCTTCGGTCGACTGAGCGCCCGCAC
65 AGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCT-GCCTCTTCGACCGGCTGAGCGCCCGCAC
* * * *
12839049 GCCCGTTTTGTGGGTTGGCTTAGGCATAG
129 GCTCATTTCGTGGGTTGGCTTAGGCATAC
* * ** *
12839078 GGAGTTCATT-CCATGTCTAAGACCTAG-CTGGATGGAGGGTTGTGGCAGTCGGATCGGCAGCAC
1 GGAGTTCATTCCCA-GTCTAAGATC-AGACCGGACCGAGGGTTGCGGCAG-CGGATCGGCAGCAC
* * * * * *
12839141 GCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGACTGGCTCAGCGCCCGA
63 GTAG-GGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGC
*
12839206 ACGCTCATTTCGTGGGTTGACTTAGGCATAC
127 ACGCTCATTTCGTGGGTTGGCTTAGGCATAC
* * * *
12839237 GAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCGACAGCGGGATCGACAGCACGT
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC-GGATCGGCAGCACGT
* *
12839302 AGGGGGGATCGGGCC-AGTCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAACGCCCGCAC
65 AGGGGGGATCGGGCCGA-TCCCCGACTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCAC
*
12839366 GCTCATTTCATGGGTTGGCTTAGGCATAC
129 GCTCATTTCGTGGGTTGGCTTAGGCATAC
*
12839395 GGAGTTCATTCCAAGTCTAAG
1 GGAGTTCATTCCCAGTCTAAG
12839416 CATATGGATT
Statistics
Matches: 282, Mismatches: 47, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
157 3 0.01
158 151 0.54
159 96 0.34
160 32 0.11
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCGGATCGGCAGCACGTA
GGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGC
TCATTTCGTGGGTTGGCTTAGGCATAC
Found at i:12839419 original size:26 final size:26
Alignment explanation
Indices: 12839389--12839441 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12839379 GTTGGCTTAG
12839389 GCATACGGAGTTCA-TTCCAAGTCTAA
1 GCATACGGAGTTCATTTCC-AGTCTAA
* *
12839415 GCATATGGATTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
12839441 G
1 G
12839442 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:12839572 original size:26 final size:26
Alignment explanation
Indices: 12839542--12839593 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
12839532 GTTGACTTAG
12839542 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* * *
12839568 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
12839594 AATCAAATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:12839919 original size:26 final size:26
Alignment explanation
Indices: 12839883--12839935 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12839873 GTTGGCTTAG
12839883 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12839909 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12839935 G
1 G
12839936 ACTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12842252 original size:26 final size:26
Alignment explanation
Indices: 12842222--12842274 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12842212 GTTGACTTAG
12842222 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * **
12842248 GCATATGGAGTTCATTGCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
12842274 G
1 G
12842275 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:12842609 original size:159 final size:157
Alignment explanation
Indices: 12842248--12842658 Score: 430
Period size: 159 Copynumber: 2.6 Consensus size: 157
12842238 CCCAGTCTAA
** * * *
12842248 GCATATGGAGTTCATTGCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGTAGGATAGGCA
1 GCATATGGAGTTCATT-CCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGACAGGCA
* * * * * * *
12842313 GCACGTAAGGGGGACCGGGCGGATCCTCGGCTTGCGCATTCTACCTCTCTGGCCGACTAAGTGCC
65 ACACGCAAGGGGGACCGGGCCGATCCCCGGCTTCCGCATTATACCTCTCTGACCGACTAAGTGCC
* * * *
12842378 TGTACGCCTGTTTCGTGGGTTGGCTTAG
130 CGTACGCCTATTTCCTGGGTTGACTTAG
* * * ** * * *
12842406 GCATAGGGAGTTCATTCAATGTCTAAG-CCCTAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGC
1 GCATATGGAGTTCATTCCA-GTCTAAGATCGGA-CCAGACCGAGGGTTGTGGCAGCAGGACAGGC
* * * *
12842470 AACACGCAGAGGGGGATCGGGCCGATCCCCGGCTTCCGCATTATGCCTCTCTGATCGACTCAGTG
64 AACACGCA-AGGGGGACCGGGCCGATCCCCGGCTTCCGCATTATACCTCTCTGACCGACTAAGTG
*
12842535 CCCGTACGCTTATTTCCTGGGTTGACTTAG
128 CCCGTACGCCTATTTCCTGGGTTGACTTAG
* * * *
12842565 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCAGAATCA-AC
1 GCATATGGAGTTCATT-CCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGA-CAGGC
* * *
12842629 AGCACGCAGGGGGGACCGGACCGATCCCCG
64 AACACGCAAGGGGGACCGGGCCGATCCCCG
12842659 ACCTTTATAT
Statistics
Matches: 202, Mismatches: 45, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
157 4 0.02
158 70 0.35
159 123 0.61
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.32, T:0.22
Consensus pattern (157 bp):
GCATATGGAGTTCATTCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGACAGGCAA
CACGCAAGGGGGACCGGGCCGATCCCCGGCTTCCGCATTATACCTCTCTGACCGACTAAGTGCCC
GTACGCCTATTTCCTGGGTTGACTTAG
Found at i:12842753 original size:26 final size:26
Alignment explanation
Indices: 12842723--12842775 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
12842713 GTTGGCTTAG
12842723 GCATACGGAGCTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
* *
12842749 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
12842775 G
1 G
12842776 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:12842775 original size:343 final size:344
Alignment explanation
Indices: 12842442--12843094 Score: 898
Period size: 343 Copynumber: 1.9 Consensus size: 344
12842432 GCCCTAGCCG
* * * *
12842442 GACCGAGGGTTGTGGCAGCGGGACCGGCAACACGCAGAGGGGGATCGGGCCGATCCCCGGCTTCC
1 GACCGAAGGTTGTGGCAGCGAGACCGACAACACGCAGAGGAGGATCGGGCCGATCCCCGGCTTCC
* * * * *
12842507 GCATTATGCCTCTCTGATCGACTCAGTGCCCGTACGCTTATTTCCTGGGTTGACTTAGGCATATG
66 GCATTATGCCTCTCTGACCGACTCAGCGCCCGCACGCTCATTTCCTGGGTTGACTTAGGCATACG
* * **
12842572 GAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCAGAATCAACAGCACGC-
131 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGAATCAACAGCACGCA
** * * * *
12842636 AGGGGGGACCGGACCGATCCCCGACCTT-TATATTCTGCCTCTCCGG-TGGACTGAAAGCCCGCA
196 AGGAAGGACCGGACCAATCCCCG-CCTTGCACATTCTGCCTCTCCGGCCGG-CTGAAAGCCCGCA
*
12842699 TGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGCTCATTCCATGTCTAAGCATACGGAGTTCGT
259 TGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGCTCATTCCATGTCTAAGCATACGGAGTTCGT
*
12842764 TCCCAGTCTAAGATCAGACCA
324 TCCCAGTCTAAGACCAGACCA
* * * *
12842785 GACCGAAGGTTGTGGCAGCGAGACCGACAGCACGTAGAGGAGGATCGGGTCGATCCCCGGCTTGC
1 GACCGAAGGTTGTGGCAGCGAGACCGACAACACGCAGAGGAGGATCGGGCCGATCCCCGGCTTCC
**
12842850 GCATTATGCCTCTCTGACCGACTCAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACG
66 GCATTATGCCTCTCTGACCGACTCAGCGCCCGCACGCTCATTTCCTGGGTTGACTTAGGCATACG
* * ** *
12842915 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATTGACAGTACGCA
131 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGAATCAACAGCACGCA
* * * * * ** *
12842980 AGGAAGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCTGCATG
196 AGGAAGGACCGGACCAATCCCCGCCTTGCACATTCTGCCTCTCCGGCCGGCTGAAAGCCCGCATG
*
12843045 CTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
261 CTCGTTTCATGGGTTGGCTTAGGCATACAGAGCTCATTCCATGTCTAAGC
12843095 CCCAGCCGGA
Statistics
Matches: 267, Mismatches: 40, Indels: 5
0.86 0.13 0.02
Matches are distributed among these distances:
343 173 0.65
344 92 0.34
345 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (344 bp):
GACCGAAGGTTGTGGCAGCGAGACCGACAACACGCAGAGGAGGATCGGGCCGATCCCCGGCTTCC
GCATTATGCCTCTCTGACCGACTCAGCGCCCGCACGCTCATTTCCTGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGAATCAACAGCACGCA
AGGAAGGACCGGACCAATCCCCGCCTTGCACATTCTGCCTCTCCGGCCGGCTGAAAGCCCGCATG
CTCGTTTCATGGGTTGGCTTAGGCATACAGAGCTCATTCCATGTCTAAGCATACGGAGTTCGTTC
CCAGTCTAAGACCAGACCA
Found at i:12842948 original size:159 final size:159
Alignment explanation
Indices: 12842749--12843127 Score: 460
Period size: 159 Copynumber: 2.4 Consensus size: 159
12842739 CCATGTCTAA
* * *
12842749 GCATACGGAGTTCGTTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGGCAGC-GAGACCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAG-GACCGAC
* * *
12842813 AGCACGTAGAGG-AGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCTGACCGACTCAGC
65 AGCACGCA-AGGAAGGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCTGACCGACTCAGC
**
12842877 GCCCGCACGCTCATTTTGTGGGTTGACTTAG
129 GCCCGCACGCTCATTTCATGGGTTGACTTAG
** * **
12842908 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGACA
* * * * *
12842973 GTACGCAAGGAAGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGC
66 GCACGCAAGGAAGGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCTGACCGACTCAGCGC
* * * *
12843038 CTGCATGCTCGTTTCATGGGTTGGCTTAG
131 CCGCACGCTCATTTCATGGGTTGACTTAG
* ** *
12843067 GCATACAGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAGCAGGACC
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGACC
12843128 CGTAGCGGAA
Statistics
Matches: 185, Mismatches: 31, Indels: 8
0.83 0.14 0.04
Matches are distributed among these distances:
158 6 0.03
159 175 0.95
160 4 0.02
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGACA
GCACGCAAGGAAGGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCTGACCGACTCAGCGC
CCGCACGCTCATTTCATGGGTTGACTTAG
Found at i:12843113 original size:502 final size:501
Alignment explanation
Indices: 12842192--12843823 Score: 1203
Period size: 502 Copynumber: 3.2 Consensus size: 501
12842182 CAGCTGAGTT
* *
12842192 CCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATGGA
1 CCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGAAGCTCATCCCCAGTCTAAGCATACGGA
* * * * * * *
12842257 GTTCATTGCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGTAGGATAGGCAGCACGTAAG
66 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGGCAGGAGGACAGACAGCACGTAAG
* * * * * * *
12842322 GGGGACCGGGCGGATCCTCGGCTTGCGCATTCTACCTCTCTGGCCGACTAAGTGCCTGTACGCCT
131 GAGGACCGGGCGGATCCCCGGCTTGCGCATTATACCTCTCTGACCGACTAAGCGCCCGCACGCCT
* * *
12842387 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCAATGTCTAAGCCCTAGCCGGACCGAGGGT
196 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCAATGTCTAAGACCTAGCCGGACCGAGGGT
** * * * * *
12842452 TGTGGCAGCGGGACCGGCAACACGCAGAGGGGGATCGGGCCGATCCCCGGCTTCCGCATTATGCC
261 TACGACAGCAGGACCGACAACACGCAGAGGAGGATCGGGCCAATCCCCGGCTTCCGCATTATGCC
* * * * * **
12842517 TCTCTGATCGACTCAGTGCCCGTACGCTTATTTCCTGGGTTGACTTAGGCATATGGAGTTCATTC
326 TCTCTGACCGACTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTC
* * *
12842582 CCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCAGAATCAACAGCACGCAGGGGGGACCG
391 CCAGTCTAAGACCAGACCAGACCGAGGGTTGTGACAGCAGAATCAACAGCACGCAGGGGGGACCG
12842647 GACCGATCCCCGACCTTTATATTCTGCCTCTCCGGTGGACTGAAAG
456 GACCGATCCCCGACCTTTATATTCTGCCTCTCCGGTGGACTGAAAG
* * * *
12842693 CCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGCTCAT-TCCATGTCTAAGCATACGG
1 CCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGAAGCTCATCCCCA-GTCTAAGCATACGG
* ** *
12842757 AGTTCGTTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGGCAGCGA-GACCGACAGCACGTA
65 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGGCAG-GAGGACAGACAGCACGTA
* * *
12842821 GAGGAGGATCGGGTC-GATCCCCGGCTTGCGCATTATGCCTCTCTGACCGACTCAGCGCCCGCAC
129 -AGGAGGACCGGG-CGGATCCCCGGCTTGCGCATTATACCTCTCTGACCGACTAAGCGCCCGCAC
* *
12842885 GCTCAT-TTT-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCGGA
192 GC-C-TGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CAATGTCTAAGACCTAG-CCGGA
** ** *
12842946 CCGAGGGTTACGACAGCAGGATTGACAGTACGCA-AGGAAGGATCGGGCCAATCCCCGGCTTGCG
253 CCGAGGGTTACGACAGCAGGACCGACAACACGCAGAGG-AGGATCGGGCCAATCCCCGGCTTCCG
* * * * * * * *
12843010 CATTCTGCCTCTCTGGCCGGCTGAGCGCCTGCATGCTCGTTTCATGGGTTGGCTTAGGCATACAG
317 CATTATGCCTCTCTGACCGACTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAG
* * *
12843075 AGTTCATT-CCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAGCAGGACCCGTAGCGGAA
382 AGTTCATTCCCA-GTCTAAG-ACCAGACCAGACCGAGGGTTGT-G-A-CA-G---C--A---GAA
* * * * ** *** * ** * * **
12843138 TCGACAACATGCATAGGGGGATTGGGTTGATCCCC-A-GTTTGCGCATTATGCCTCTTCGACCGG
433 TCAACAGCACGCA-GGGGGGACCGGACCGATCCCCGACCTTT--ATATTCTGCCTCTCCG-GTGG
*
12843201 ACTCTCCAACCGGCTGAG
494 A--CT-GAA-------AG
* * ** * * * * ** *
12843219 CACCCGCACGCTCGTTTTGTGGGTTAACTTAGGCATACGGAGTTCATCCCCAATCTAAGGTTATG
1 --CCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGAAGCTCATCCCCAGTCTAAGCATACG
* * * * * **
12843284 GAGTTCATTCCAAGTCTAAGATCAGACC-GAACTGAGGGTTGCGGCAGTAGGATC-GACAGCGTG
64 GAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAAGGTTACGGCAGGAGGA-CAGACAGCACG
* ** * * * ** * * * *
12843347 TAAGG-GGATCGGGTTGATCCCCGACTTGCGCATTCTACCTCTTTGGTCGGCTGAGCACCCGTAC
127 TAAGGAGGACCGGGCGGATCCCCGGCTTGCGCATTATACCTCTCTGACCGACTAAGCGCCCGCAC
* * * * * * * *
12843411 GCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTGGACGGA
192 GCCTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCAATGTCTAAGACCTAGCCGGACCGA
** * ** * * * * * * * * * *
12843476 GGGTTGTGGCAGTTGGACTGGCAGCACACAGAGGGGGATCGAGCCGATCCCTGACTTGCGCATTA
257 GGGTTACGACAGCAGGACCGACAACACGCAGAGGAGGATCGGGCCAATCCCCGGCTTCCGCATTA
* * * * * * * *
12843541 TGCCTCTCCGGCTGGCTCAGCGTCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
322 TGCCTCTCTGACCGACTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTC
* * * * * * * *
12843606 ATTCCCAGTCTAAGATCAGATCGGACCGAAGGTTGCGACAGCAGGATCGACAGCACGTAGGGGGG
387 ATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTGTGACAGCAGAATCAACAGCACGCAGGGGGG
* * *** * ** *
12843671 ACCGGGCC-AGTCCCCG-GCTTGCGCATTCTGCCTCTTCGACCGG-CTGAACG
452 ACCGGACCGA-TCCCCGACCTT-TATATTCTGCCTCTCCG-GTGGACTGAAAG
* * * * *
12843721 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCAAGTCTAAGCATACGGA
1 CCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGAAGCTCATCCCCAGTCTAAGCATACGGA
* * * * * *
12843786 TTTCATTTCTAGTCTAAGATCAGAACAGATCGAGGGTT
66 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTT
12843824 GCTGCAGCAG
Statistics
Matches: 892, Mismatches: 183, Indels: 113
0.75 0.15 0.10
Matches are distributed among these distances:
500 86 0.10
501 114 0.13
502 222 0.25
503 10 0.01
504 2 0.00
505 2 0.00
506 1 0.00
509 3 0.00
510 2 0.00
511 1 0.00
512 1 0.00
513 37 0.04
514 28 0.03
515 27 0.03
516 3 0.00
517 1 0.00
518 2 0.00
519 3 0.00
522 1 0.00
523 2 0.00
524 1 0.00
525 11 0.01
526 216 0.24
527 13 0.01
528 99 0.11
529 4 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (501 bp):
CCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGAAGCTCATCCCCAGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGGCAGGAGGACAGACAGCACGTAAG
GAGGACCGGGCGGATCCCCGGCTTGCGCATTATACCTCTCTGACCGACTAAGCGCCCGCACGCCT
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCAATGTCTAAGACCTAGCCGGACCGAGGGT
TACGACAGCAGGACCGACAACACGCAGAGGAGGATCGGGCCAATCCCCGGCTTCCGCATTATGCC
TCTCTGACCGACTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTC
CCAGTCTAAGACCAGACCAGACCGAGGGTTGTGACAGCAGAATCAACAGCACGCAGGGGGGACCG
GACCGATCCCCGACCTTTATATTCTGCCTCTCCGGTGGACTGAAAG
Found at i:12843583 original size:159 final size:157
Alignment explanation
Indices: 12843420--12843778 Score: 382
Period size: 158 Copynumber: 2.3 Consensus size: 157
12843410 CGCCCGTTTT
* * * * *
12843420 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCT-GGACGGAGGGTTGTG
1 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGCCC-AGATCGGACCGAAGGTTGCG
* ** * * *
12843484 GCAGTTGGA-CTGGCAGCACACAGAGGGGGATCGAGCC-GATCCCTGACTTGCGCATTATGCCTC
64 ACAGCAGGATC-GACAGCACACAG-GGGGGACCGAGCCAG-TCCCCGACTTGCGCATTATGCCTC
* * * *
12843547 TCCGGCTGGCTCAGCGTCCGAACGCTCATTTC
126 TCCGACCGGCTCAACGCCCGAACGCTCATTTC
* **
12843579 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAAGGTTGCGA
1 GTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGCCCAGATCGGACCGAAGGTTGCGA
** * * * *
12843644 CAGCAGGATCGACAGCACGTAGGGGGGACCGGGCCAGTCCCCGGCTTGCGCATTCTGCCTCTTCG
65 CAGCAGGATCGACAGCACACAGGGGGGACCGAGCCAGTCCCCGACTTGCGCATTATGCCTCTCCG
* *
12843709 ACCGGCTGAACGCCCGCACGCTCATTTC
130 ACCGGCTCAACGCCCGAACGCTCATTTC
* *
12843737 ATGGGTTGGCTTAGGCATACGAAGTTCATTCCAAGTCTAAGC
1 GTGGGTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGC
12843779 ATACGGATTT
Statistics
Matches: 165, Mismatches: 30, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
157 2 0.01
158 95 0.58
159 64 0.39
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GTGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGCCCAGATCGGACCGAAGGTTGCGAC
AGCAGGATCGACAGCACACAGGGGGGACCGAGCCAGTCCCCGACTTGCGCATTATGCCTCTCCGA
CCGGCTCAACGCCCGAACGCTCATTTC
Found at i:12843750 original size:158 final size:158
Alignment explanation
Indices: 12843283--12843777 Score: 512
Period size: 159 Copynumber: 3.1 Consensus size: 158
12843273 CTAAGGTTAT
* * * **
12843283 GGAGTTCATTCCAAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGTAGGATCGACAGCGTGT
1 GGAGTTCATTCCAAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGT
* ** * * * * *
12843348 A-AGGGGATCGGGTTGATCCCCGACTTGCGCATTCTACCTCTTTGGTCGGCTGAGCACCCGTACG
66 AGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGAACG
* * * *
12843412 CCCGTTTTGTGGGTTGGCTTAGGCATAG
131 CTCATTTCGTGGGTTGGCTTAGGCATAC
* ** * * * * *
12843440 GGAGTTCATTCCATGTCTAAGCCCTAGCT-GGACGGAGGGTTGTGGCAGTTGGA-CTGGCAGCAC
1 GGAGTTCATTCCAAGTCTAAGATC-AGATCGGACCGAGGGTTGCGGCAGTAGGATC-GACAGCAC
** * * * * * * *
12843503 ACAGAGGGGGATCGAGCCGATCCCTGACTTGCGCATTATGCCTCTCCGGCTGGCTCAGCGTCCGA
64 GTAG-GGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGA
*
12843568 ACGCTCATTTCGTGGGTTGACTTAGGCATAC
128 ACGCTCATTTCGTGGGTTGGCTTAGGCATAC
* * * *
12843599 GGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAAGGTTGCGACAGCAGGATCGACAGCACGT
1 GGAGTTCATTCCAAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGT
* * * * *
12843664 AGGGGGGACCGGGCC-AGTCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAACGCCCGCAC
66 AGGGGGGATCGGGCCGA-TCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGAAC
*
12843728 GCTCATTTCATGGGTTGGCTTAGGCATAC
130 GCTCATTTCGTGGGTTGGCTTAGGCATAC
*
12843757 GAAGTTCATTCCAAGTCTAAG
1 GGAGTTCATTCCAAGTCTAAG
12843778 CATACGGATT
Statistics
Matches: 267, Mismatches: 64, Indels: 13
0.78 0.19 0.04
Matches are distributed among these distances:
156 1 0.00
157 48 0.18
158 99 0.37
159 118 0.44
160 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (158 bp):
GGAGTTCATTCCAAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGT
AGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGAACG
CTCATTTCGTGGGTTGGCTTAGGCATAC
Found at i:12843781 original size:26 final size:26
Alignment explanation
Indices: 12843751--12843803 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12843741 GTTGGCTTAG
12843751 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
* * * *
12843777 GCATACGGATTTCATTTCTAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
12843803 G
1 G
12843804 ATCAGAACAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:12843934 original size:26 final size:26
Alignment explanation
Indices: 12843904--12843955 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
12843894 GTTGACTTAG
12843904 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
12843930 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
12843956 AATCAAATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:12844282 original size:26 final size:26
Alignment explanation
Indices: 12844246--12844298 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
12844236 GTTGGCTTAG
12844246 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
12844272 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12844298 G
1 G
12844299 ACTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:12849773 original size:171 final size:170
Alignment explanation
Indices: 12849343--12849799 Score: 494
Period size: 170 Copynumber: 2.7 Consensus size: 170
12849333 GACAGCACGC
* * * *
12849343 AGAGGGGGATCGGGTTGATCCCCGGCTTGCGCATTAT-TCCTCTCCGATCGGCTCAGTGCCCGCA
1 AGAGGGGGACCGGG-TGATCCCCGGCTTGCGCATTATGT-CTCTCCGACCGGCTGAGCGCCCGCA
* * ** * *
12849407 CACTCATTTCGTGGGTTGACCTT-GGCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGGAT
64 CGCTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAGATCGGAC
*
12849470 CAAGGGTTACGGCAGCAAGACCAGCAACAGGATCGGTAACACAT
127 CAAGGGTTACGGCAGCAAGACCAGCAACAGGATCGGCAACACAT
* * * * * * * * *
12849514 AG-GGGGGACCAGGTCAAACCCCGGTTTGCGCATTCTGCCTCTTC-ACCCGGATGAGCGCCTGCA
1 AGAGGGGGACCGGGT-GATCCCCGGCTTGCGCATTATGTCTCTCCGA-CCGGCTGAGCGCCCGCA
* *
12849577 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCT-GGACC
64 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGATCGGACC
* ** * * * * **
12849641 GAGGGTTGTGGCAGCAAGACCTGCAGCAGGATTGGCAGCATGT
128 AAGGGTTACGGCAGCAAGACCAGCAACAGGATCGGCAACACAT
*
12849684 AGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGTCTCTCCGGCCGGCTGAGCGCCCGCAC
1 AGAGGGGGACCGGG-TGATCCCCGGCTTGCGCATTATGTCTCTCCGACCGGCTGAGCGCCCGCAC
* *
12849749 GCTCGTTTCGTCGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGC
65 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
12849800 ATATGGAGTT
Statistics
Matches: 233, Mismatches: 44, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
169 8 0.03
170 123 0.53
171 101 0.43
172 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (170 bp):
AGAGGGGGACCGGGTGATCCCCGGCTTGCGCATTATGTCTCTCCGACCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGATCGGACCAAG
GGTTACGGCAGCAAGACCAGCAACAGGATCGGCAACACAT
Done.